Query 003840
Match_columns 792
No_of_seqs 1205 out of 2981
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 05:49:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.3E-42 4.3E-47 389.7 42.0 283 505-792 101-408 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 8.2E-42 2.8E-46 372.8 46.7 289 499-792 42-340 (340)
3 3ow8_A WD repeat-containing pr 100.0 2.4E-41 8.2E-46 366.7 42.8 284 504-792 24-318 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 2.1E-40 7.2E-45 364.2 46.0 289 500-792 52-354 (354)
5 3iz6_a 40S ribosomal protein R 100.0 1.5E-41 5.1E-46 376.8 34.0 291 499-792 53-372 (380)
6 1nr0_A Actin interacting prote 100.0 2.4E-40 8.1E-45 390.5 44.4 349 430-792 106-608 (611)
7 1nr0_A Actin interacting prote 100.0 1.7E-40 5.9E-45 391.8 42.7 350 430-792 62-564 (611)
8 2ynn_A Coatomer subunit beta'; 100.0 1.4E-39 4.8E-44 349.4 42.3 283 502-789 3-297 (304)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.1E-39 7.2E-44 354.6 40.9 291 501-792 4-332 (345)
10 1erj_A Transcriptional repress 100.0 5.8E-39 2E-43 357.6 43.8 281 509-792 61-386 (393)
11 2ymu_A WD-40 repeat protein; u 100.0 1.3E-38 4.4E-43 370.6 48.0 342 430-792 224-577 (577)
12 4ery_A WD repeat-containing pr 100.0 1.2E-38 4E-43 342.0 43.7 287 501-792 12-309 (312)
13 3frx_A Guanine nucleotide-bind 100.0 1.1E-38 3.7E-43 345.1 43.5 285 500-792 5-314 (319)
14 4gqb_B Methylosome protein 50; 100.0 3.7E-39 1.3E-43 353.4 36.9 242 509-792 79-328 (344)
15 2xzm_R RACK1; ribosome, transl 100.0 2.4E-38 8.2E-43 345.6 41.8 286 500-792 9-337 (343)
16 2hes_X YDR267CP; beta-propelle 100.0 5.7E-38 2E-42 341.1 41.0 287 502-792 4-325 (330)
17 4g56_B MGC81050 protein; prote 100.0 1.2E-38 4.1E-43 350.8 34.5 280 508-792 38-340 (357)
18 3zwl_B Eukaryotic translation 100.0 2.3E-37 7.9E-42 336.5 43.7 283 503-792 23-343 (369)
19 2ymu_A WD-40 repeat protein; u 100.0 4E-37 1.4E-41 358.0 48.6 342 430-792 183-536 (577)
20 1gxr_A ESG1, transducin-like e 100.0 5E-37 1.7E-41 329.9 44.8 279 507-792 46-334 (337)
21 1r5m_A SIR4-interacting protei 100.0 2.1E-37 7.2E-42 343.6 40.2 325 430-792 48-422 (425)
22 4aow_A Guanine nucleotide-bind 100.0 1.4E-36 4.6E-41 327.8 45.1 286 500-792 26-334 (340)
23 1vyh_C Platelet-activating fac 100.0 1.7E-37 5.8E-42 348.0 38.7 273 430-753 111-410 (410)
24 2pm9_A Protein WEB1, protein t 100.0 8.5E-39 2.9E-43 355.4 27.0 280 510-792 65-411 (416)
25 1sq9_A Antiviral protein SKI8; 100.0 4E-37 1.4E-41 340.0 38.1 284 502-792 6-392 (397)
26 2ynn_A Coatomer subunit beta'; 100.0 1.8E-36 6.3E-41 325.1 39.5 276 430-754 16-302 (304)
27 3vl1_A 26S proteasome regulato 100.0 8E-37 2.7E-41 340.6 37.7 309 432-792 61-416 (420)
28 3ow8_A WD repeat-containing pr 100.0 2.6E-36 8.9E-41 327.1 40.3 244 505-753 73-320 (321)
29 3dm0_A Maltose-binding peripla 100.0 5.5E-36 1.9E-40 358.3 43.6 284 502-792 372-690 (694)
30 1k8k_C P40, ARP2/3 complex 41 100.0 3.1E-36 1E-40 329.2 36.7 280 508-792 4-358 (372)
31 1pgu_A Actin interacting prote 100.0 2.7E-35 9.3E-40 344.0 46.5 351 429-792 20-611 (615)
32 3k26_A Polycomb protein EED; W 100.0 2E-36 6.9E-41 329.1 32.2 290 500-792 5-363 (366)
33 3odt_A Protein DOA1; ubiquitin 100.0 4.2E-35 1.4E-39 311.9 41.6 278 501-792 7-293 (313)
34 4g56_B MGC81050 protein; prote 100.0 3.3E-36 1.1E-40 331.3 33.5 244 506-755 88-344 (357)
35 1r5m_A SIR4-interacting protei 100.0 1.5E-35 5E-40 328.7 39.0 281 504-792 37-358 (425)
36 3i2n_A WD repeat-containing pr 100.0 8E-36 2.7E-40 323.6 35.6 285 506-792 12-350 (357)
37 1got_B GT-beta; complex (GTP-b 100.0 3.9E-35 1.3E-39 319.9 40.7 270 430-751 58-340 (340)
38 3ei3_B DNA damage-binding prot 100.0 2.3E-35 7.9E-40 325.5 37.2 284 501-792 62-379 (383)
39 3frx_A Guanine nucleotide-bind 100.0 1.3E-34 4.5E-39 313.0 41.4 246 504-755 57-318 (319)
40 1erj_A Transcriptional repress 100.0 9.9E-35 3.4E-39 323.3 40.6 293 430-755 67-390 (393)
41 3gre_A Serine/threonine-protei 100.0 1.9E-35 6.4E-40 332.3 33.5 285 502-792 52-437 (437)
42 2pbi_B Guanine nucleotide-bind 100.0 2.9E-34 9.8E-39 315.3 40.8 272 430-751 67-354 (354)
43 4ery_A WD repeat-containing pr 100.0 6.1E-34 2.1E-38 305.3 41.3 273 430-753 26-311 (312)
44 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.6E-34 5.5E-39 315.9 37.3 285 430-758 19-339 (345)
45 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-35 8.1E-40 374.7 35.3 352 430-792 660-1155(1249)
46 2oaj_A Protein SNI1; WD40 repe 100.0 6.5E-35 2.2E-39 358.6 37.1 348 430-792 20-602 (902)
47 3v7d_B Cell division control p 100.0 8.5E-34 2.9E-38 321.3 43.0 280 503-792 112-418 (464)
48 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-34 6.6E-39 366.3 41.9 315 430-792 618-1031(1249)
49 3dwl_C Actin-related protein 2 100.0 4.2E-36 1.4E-40 330.1 22.8 283 507-792 6-376 (377)
50 2pm9_A Protein WEB1, protein t 100.0 1.4E-35 4.6E-40 329.6 26.8 277 513-792 13-334 (416)
51 3mmy_A MRNA export factor; mRN 100.0 1.3E-34 4.5E-39 314.6 33.9 289 500-791 27-342 (368)
52 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.2E-33 1.1E-37 315.5 45.9 271 505-792 152-439 (445)
53 2oaj_A Protein SNI1; WD40 repe 100.0 2.1E-34 7.1E-39 354.1 38.9 352 430-792 61-658 (902)
54 3mkq_A Coatomer beta'-subunit; 100.0 7E-34 2.4E-38 344.5 42.4 313 430-792 16-383 (814)
55 2xzm_R RACK1; ribosome, transl 100.0 9.6E-34 3.3E-38 309.1 39.1 247 504-755 68-341 (343)
56 3iz6_a 40S ribosomal protein R 100.0 1E-34 3.5E-39 321.8 31.2 277 430-756 69-377 (380)
57 1gxr_A ESG1, transducin-like e 100.0 3.8E-34 1.3E-38 307.4 33.6 276 511-792 8-293 (337)
58 2j04_B YDR362CP, TAU91; beta p 100.0 4.7E-35 1.6E-39 338.3 27.5 305 485-792 179-514 (524)
59 4aez_A CDC20, WD repeat-contai 100.0 1.5E-33 5E-38 314.2 38.4 279 506-792 85-377 (401)
60 3v7d_B Cell division control p 100.0 1.6E-32 5.3E-37 310.9 46.7 275 505-791 155-459 (464)
61 2pm7_B Protein transport prote 100.0 1.3E-33 4.5E-38 301.8 35.6 249 506-754 3-285 (297)
62 2hes_X YDR267CP; beta-propelle 100.0 2.3E-33 8E-38 304.7 37.5 243 510-754 56-328 (330)
63 4a11_B DNA excision repair pro 100.0 2.5E-33 8.5E-38 309.4 37.6 287 504-792 35-362 (408)
64 3dw8_B Serine/threonine-protei 100.0 6E-34 2.1E-38 319.7 32.8 276 510-791 26-442 (447)
65 3f3f_A Nucleoporin SEH1; struc 100.0 6.6E-34 2.2E-38 305.2 31.6 283 506-792 5-334 (351)
66 4gga_A P55CDC, cell division c 100.0 5E-33 1.7E-37 312.0 40.1 268 515-792 108-392 (420)
67 4e54_B DNA damage-binding prot 100.0 1.7E-34 5.8E-39 325.7 28.2 281 504-792 111-427 (435)
68 4gga_A P55CDC, cell division c 100.0 1E-32 3.5E-37 309.6 41.4 296 410-758 90-399 (420)
69 3mkq_A Coatomer beta'-subunit; 100.0 2.4E-33 8.1E-38 339.9 39.0 285 502-792 3-299 (814)
70 3bg1_A Protein SEC13 homolog; 100.0 1.9E-34 6.6E-39 311.3 26.1 250 507-792 8-290 (316)
71 1yfq_A Cell cycle arrest prote 100.0 8.4E-34 2.9E-38 306.5 31.0 275 505-787 4-315 (342)
72 4ggc_A P55CDC, cell division c 100.0 1.5E-32 5.3E-37 293.0 40.2 268 515-792 28-312 (318)
73 4h5i_A Guanine nucleotide-exch 100.0 8.1E-34 2.8E-38 313.2 30.5 278 512-792 14-340 (365)
74 3vl1_A 26S proteasome regulato 100.0 8E-34 2.7E-38 316.3 30.1 272 514-792 58-362 (420)
75 1p22_A F-BOX/WD-repeat protein 100.0 5.7E-33 2E-37 312.9 36.7 270 504-792 125-411 (435)
76 4aow_A Guanine nucleotide-bind 100.0 4.3E-32 1.5E-36 292.5 41.6 282 430-756 41-339 (340)
77 1pgu_A Actin interacting prote 100.0 1.1E-32 3.8E-37 321.9 38.9 292 489-792 39-363 (615)
78 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.8E-32 2.7E-36 304.2 42.1 273 502-792 108-388 (445)
79 3jrp_A Fusion protein of prote 100.0 1.5E-32 5.1E-37 300.0 33.1 252 504-792 3-284 (379)
80 4aez_A CDC20, WD repeat-contai 100.0 1.4E-31 4.6E-36 298.3 40.8 243 511-758 133-384 (401)
81 2pm7_B Protein transport prote 100.0 3.1E-32 1.1E-36 291.2 33.2 246 547-792 2-282 (297)
82 3dm0_A Maltose-binding peripla 100.0 1E-31 3.4E-36 321.4 41.5 246 504-754 422-693 (694)
83 3i2n_A WD repeat-containing pr 100.0 1.7E-32 5.7E-37 297.4 31.5 247 510-757 63-356 (357)
84 1sq9_A Antiviral protein SKI8; 100.0 4.1E-32 1.4E-36 299.8 35.1 248 503-756 53-397 (397)
85 3zwl_B Eukaryotic translation 100.0 3.2E-31 1.1E-35 288.0 41.5 275 430-756 35-348 (369)
86 1k8k_C P40, ARP2/3 complex 41 100.0 4.5E-32 1.5E-36 296.1 34.6 282 430-756 11-363 (372)
87 3k26_A Polycomb protein EED; W 100.0 2.2E-32 7.6E-37 297.1 31.4 241 510-754 67-366 (366)
88 4ggc_A P55CDC, cell division c 100.0 2.9E-31 9.9E-36 283.2 38.8 291 412-756 12-317 (318)
89 2aq5_A Coronin-1A; WD40 repeat 100.0 4.9E-32 1.7E-36 301.6 32.9 277 513-792 35-339 (402)
90 4gqb_B Methylosome protein 50; 100.0 1.2E-31 3.9E-36 293.8 34.3 207 507-757 122-334 (344)
91 3odt_A Protein DOA1; ubiquitin 100.0 5.4E-31 1.8E-35 280.1 36.8 242 505-759 52-301 (313)
92 3ei3_B DNA damage-binding prot 100.0 1.5E-31 5E-36 295.0 32.7 272 430-754 76-382 (383)
93 3dwl_C Actin-related protein 2 100.0 1.1E-32 3.9E-37 302.7 23.1 278 430-752 14-377 (377)
94 4a11_B DNA excision repair pro 100.0 5.3E-31 1.8E-35 290.7 35.5 323 430-792 46-402 (408)
95 3vu4_A KMHSV2; beta-propeller 100.0 1.3E-30 4.3E-35 286.3 33.7 275 504-792 11-333 (355)
96 4e54_B DNA damage-binding prot 100.0 1.5E-31 5E-36 301.7 26.1 246 506-757 158-433 (435)
97 3bws_A Protein LP49; two-domai 100.0 4.9E-30 1.7E-34 287.2 38.4 285 501-792 112-429 (433)
98 1p22_A F-BOX/WD-repeat protein 100.0 3.7E-30 1.3E-34 289.9 34.4 285 430-773 134-433 (435)
99 3dw8_B Serine/threonine-protei 100.0 7.8E-31 2.7E-35 294.3 28.4 287 429-753 30-445 (447)
100 4h5i_A Guanine nucleotide-exch 100.0 1.8E-30 6.3E-35 286.3 30.6 240 507-755 68-344 (365)
101 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1E-29 3.5E-34 287.7 36.8 270 513-791 5-387 (450)
102 2xyi_A Probable histone-bindin 100.0 5.3E-30 1.8E-34 288.7 30.5 250 505-792 121-407 (430)
103 3gre_A Serine/threonine-protei 100.0 5.2E-31 1.8E-35 296.0 21.9 260 520-792 35-356 (437)
104 3lrv_A PRE-mRNA-splicing facto 100.0 1E-30 3.4E-35 285.0 23.1 263 519-791 43-329 (343)
105 2j04_B YDR362CP, TAU91; beta p 100.0 6.2E-31 2.1E-35 303.8 21.0 254 522-780 171-459 (524)
106 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-29 4.7E-34 281.8 31.0 267 487-758 55-346 (402)
107 2j04_A TAU60, YPL007P, hypothe 100.0 1.5E-30 5.2E-35 295.9 23.2 308 429-784 17-350 (588)
108 3jro_A Fusion protein of prote 100.0 2.6E-30 9E-35 312.2 26.0 250 506-792 3-282 (753)
109 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1E-28 3.4E-33 279.6 36.0 244 507-753 97-390 (450)
110 1l0q_A Surface layer protein; 100.0 4.8E-28 1.6E-32 267.1 38.9 260 525-792 3-272 (391)
111 1yfq_A Cell cycle arrest prote 100.0 6E-29 2E-33 268.4 30.7 269 429-751 13-321 (342)
112 2j04_A TAU60, YPL007P, hypothe 100.0 9.5E-30 3.2E-34 289.3 24.8 259 510-792 13-294 (588)
113 3mmy_A MRNA export factor; mRN 100.0 5.9E-28 2E-32 262.0 35.9 277 429-758 41-353 (368)
114 3f3f_A Nucleoporin SEH1; struc 100.0 1.8E-28 6E-33 262.8 30.6 286 430-758 14-341 (351)
115 3bg1_A Protein SEC13 homolog; 100.0 2.9E-29 9.8E-34 270.7 23.7 247 430-720 16-304 (316)
116 1l0q_A Surface layer protein; 100.0 3.5E-27 1.2E-31 260.2 40.7 265 488-764 11-286 (391)
117 4gq1_A NUP37; propeller, trans 100.0 3E-29 1E-33 279.3 22.4 264 507-788 84-383 (393)
118 3jrp_A Fusion protein of prote 100.0 1.2E-27 4.2E-32 260.9 32.6 246 430-754 14-287 (379)
119 3bws_A Protein LP49; two-domai 100.0 2.7E-26 9.3E-31 256.7 36.2 240 508-754 165-432 (433)
120 1nir_A Nitrite reductase; hemo 100.0 2.6E-26 9E-31 266.6 37.2 275 515-792 181-511 (543)
121 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-26 5.1E-31 253.8 28.3 243 538-792 3-268 (355)
122 2w18_A PALB2, fancn, partner a 99.9 1E-25 3.5E-30 241.8 29.9 258 488-792 62-354 (356)
123 3lrv_A PRE-mRNA-splicing facto 99.9 4.7E-27 1.6E-31 255.9 19.3 221 561-792 43-289 (343)
124 3jro_A Fusion protein of prote 99.9 7.6E-27 2.6E-31 281.9 22.1 210 503-712 44-288 (753)
125 2xyi_A Probable histone-bindin 99.9 5E-25 1.7E-29 247.9 31.4 207 503-709 172-410 (430)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 8.9E-25 3.1E-29 245.2 31.1 278 490-777 94-410 (415)
127 4gq1_A NUP37; propeller, trans 99.9 1.5E-25 5.1E-30 249.4 19.6 204 504-708 128-388 (393)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 1E-24 3.5E-29 244.8 25.7 271 513-792 63-384 (415)
129 3vgz_A Uncharacterized protein 99.9 5E-23 1.7E-27 222.9 38.1 267 512-785 40-334 (353)
130 2w18_A PALB2, fancn, partner a 99.9 4.4E-24 1.5E-28 229.2 28.7 219 505-752 104-355 (356)
131 1nir_A Nitrite reductase; hemo 99.9 1.3E-23 4.5E-28 243.9 32.8 266 519-792 144-455 (543)
132 2ecf_A Dipeptidyl peptidase IV 99.9 1.4E-23 4.7E-28 252.1 31.9 270 513-791 109-455 (741)
133 2ecf_A Dipeptidyl peptidase IV 99.9 9.7E-24 3.3E-28 253.4 29.5 274 512-792 36-410 (741)
134 3u4y_A Uncharacterized protein 99.9 1.2E-22 4.1E-27 218.5 34.7 272 518-792 3-301 (331)
135 1ri6_A Putative isomerase YBHE 99.9 9.3E-23 3.2E-27 219.3 32.0 265 526-792 7-305 (343)
136 1k32_A Tricorn protease; prote 99.9 3.8E-23 1.3E-27 258.4 31.9 289 489-792 183-499 (1045)
137 3u4y_A Uncharacterized protein 99.9 5.8E-22 2E-26 213.1 35.7 262 510-776 38-326 (331)
138 2ojh_A Uncharacterized protein 99.9 7.6E-23 2.6E-27 214.1 25.3 255 486-786 19-293 (297)
139 1ri6_A Putative isomerase YBHE 99.9 5.8E-22 2E-26 213.1 32.4 285 489-777 15-335 (343)
140 1pby_B Quinohemoprotein amine 99.9 4E-22 1.4E-26 213.8 30.2 260 525-792 2-307 (337)
141 1k32_A Tricorn protease; prote 99.9 2.8E-22 9.7E-27 250.5 33.2 287 490-792 81-458 (1045)
142 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-22 4.2E-27 242.9 27.3 268 514-784 62-429 (723)
143 3o4h_A Acylamino-acid-releasin 99.9 2.3E-22 8E-27 234.9 28.4 267 512-792 21-312 (582)
144 2z3z_A Dipeptidyl aminopeptida 99.9 9.2E-22 3.2E-26 234.9 32.5 275 511-792 80-432 (706)
145 1xfd_A DIP, dipeptidyl aminope 99.9 4.5E-23 1.5E-27 246.7 20.7 271 514-792 18-390 (723)
146 3hfq_A Uncharacterized protein 99.9 1.6E-20 5.6E-25 203.8 33.3 264 526-791 4-313 (347)
147 3hfq_A Uncharacterized protein 99.9 3.5E-20 1.2E-24 201.2 33.5 249 509-759 36-324 (347)
148 3vgz_A Uncharacterized protein 99.9 6.3E-20 2.2E-24 198.4 34.8 224 514-745 90-335 (353)
149 2z3z_A Dipeptidyl aminopeptida 99.9 1E-20 3.5E-25 225.8 30.0 239 510-756 118-437 (706)
150 1jmx_B Amine dehydrogenase; ox 99.9 2.2E-20 7.6E-25 201.4 29.0 268 517-792 4-322 (349)
151 3pe7_A Oligogalacturonate lyas 99.9 7.6E-21 2.6E-25 209.1 25.4 285 504-791 22-378 (388)
152 3scy_A Hypothetical bacterial 99.9 2.2E-19 7.4E-24 196.2 35.3 267 502-773 41-360 (361)
153 1pby_B Quinohemoprotein amine 99.9 2.9E-20 9.9E-25 199.2 27.1 257 489-758 11-314 (337)
154 3scy_A Hypothetical bacterial 99.9 1.9E-19 6.6E-24 196.6 32.7 264 524-791 13-333 (361)
155 2oit_A Nucleoporin 214KDA; NH2 99.9 5E-20 1.7E-24 207.8 26.9 279 512-792 36-402 (434)
156 1z68_A Fibroblast activation p 99.8 2.9E-20 1E-24 222.5 22.8 269 514-792 61-440 (719)
157 1z68_A Fibroblast activation p 99.8 6.1E-21 2.1E-25 228.5 15.9 268 517-792 20-388 (719)
158 1jof_A Carboxy-CIS,CIS-muconat 99.8 2E-18 6.7E-23 189.6 29.8 265 526-792 4-338 (365)
159 3c5m_A Oligogalacturonate lyas 99.8 3.4E-19 1.2E-23 195.9 20.6 271 514-791 37-378 (396)
160 2ojh_A Uncharacterized protein 99.8 2E-18 6.8E-23 180.3 23.9 220 530-792 18-255 (297)
161 1jmx_B Amine dehydrogenase; ox 99.8 2.7E-18 9.2E-23 185.0 23.7 236 514-759 44-330 (349)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.1E-17 3.7E-22 183.7 28.9 244 511-756 38-343 (365)
163 4a5s_A Dipeptidyl peptidase 4 99.8 6.3E-18 2.1E-22 203.5 27.4 263 514-784 18-382 (740)
164 2oit_A Nucleoporin 214KDA; NH2 99.8 3.8E-17 1.3E-21 184.3 31.6 195 510-707 90-331 (434)
165 3o4h_A Acylamino-acid-releasin 99.8 1.7E-18 5.9E-23 202.1 21.2 229 553-792 20-273 (582)
166 4a5s_A Dipeptidyl peptidase 4 99.8 1.9E-17 6.3E-22 199.4 30.3 306 431-784 20-435 (740)
167 2oiz_A Aromatic amine dehydrog 99.8 1.2E-16 4.2E-21 175.5 32.3 263 504-777 43-360 (361)
168 2oiz_A Aromatic amine dehydrog 99.8 6.6E-17 2.3E-21 177.7 29.3 262 523-792 14-331 (361)
169 3pe7_A Oligogalacturonate lyas 99.8 2.7E-17 9.1E-22 180.7 23.7 239 510-754 78-384 (388)
170 3azo_A Aminopeptidase; POP fam 99.8 4.3E-17 1.5E-21 193.0 26.1 280 507-791 18-363 (662)
171 3fvz_A Peptidyl-glycine alpha- 99.8 3.4E-16 1.2E-20 169.3 30.1 239 512-754 23-322 (329)
172 2gop_A Trilobed protease; beta 99.8 4E-16 1.4E-20 168.8 30.1 251 514-791 16-327 (347)
173 2dg1_A DRP35, lactonase; beta 99.7 4.8E-16 1.6E-20 167.4 28.2 266 513-785 6-300 (333)
174 1qks_A Cytochrome CD1 nitrite 99.7 1.6E-14 5.5E-19 167.7 39.3 286 503-792 188-535 (567)
175 1q7f_A NHL, brain tumor CG1071 99.7 5.3E-15 1.8E-19 155.7 32.3 232 552-792 27-277 (286)
176 3c5m_A Oligogalacturonate lyas 99.7 2.4E-16 8.1E-21 173.1 21.7 234 517-759 85-389 (396)
177 1q7f_A NHL, brain tumor CG1071 99.7 7.1E-15 2.4E-19 154.7 32.2 236 509-755 26-281 (286)
178 3fvz_A Peptidyl-glycine alpha- 99.7 3.6E-15 1.2E-19 161.3 28.9 232 554-792 23-319 (329)
179 2z2n_A Virginiamycin B lyase; 99.7 1.5E-13 5.1E-18 144.4 39.8 272 508-789 10-290 (299)
180 2gop_A Trilobed protease; beta 99.7 5.6E-15 1.9E-19 159.7 29.0 234 513-766 59-342 (347)
181 2xdw_A Prolyl endopeptidase; a 99.7 5.1E-15 1.7E-19 177.2 28.1 243 510-756 122-416 (710)
182 3dsm_A Uncharacterized protein 99.7 2.6E-14 8.9E-19 154.6 30.7 249 532-792 15-299 (328)
183 2dg1_A DRP35, lactonase; beta 99.7 1E-13 3.5E-18 149.1 34.9 235 504-745 36-301 (333)
184 3azo_A Aminopeptidase; POP fam 99.7 2.7E-15 9.4E-20 177.4 24.5 239 517-760 81-375 (662)
185 3e5z_A Putative gluconolactona 99.7 4.1E-14 1.4E-18 149.9 29.7 238 544-790 17-282 (296)
186 2mad_H Methylamine dehydrogena 99.7 3.4E-13 1.2E-17 148.7 37.0 266 520-792 28-347 (373)
187 1qks_A Cytochrome CD1 nitrite 99.7 2.6E-13 9E-18 157.5 37.6 263 522-792 165-474 (567)
188 3e5z_A Putative gluconolactona 99.7 7.3E-14 2.5E-18 148.0 30.3 240 506-757 21-289 (296)
189 3sjl_D Methylamine dehydrogena 99.6 3.5E-14 1.2E-18 155.9 28.1 271 518-792 38-360 (386)
190 2qc5_A Streptogramin B lactona 99.6 1.7E-12 5.9E-17 136.3 37.7 272 509-791 16-296 (300)
191 1rwi_B Serine/threonine-protei 99.6 7.1E-14 2.4E-18 145.3 26.2 236 514-756 25-266 (270)
192 3dsm_A Uncharacterized protein 99.6 1.5E-13 5E-18 148.7 29.5 251 514-772 45-319 (328)
193 2bkl_A Prolyl endopeptidase; m 99.6 9.5E-15 3.2E-19 174.5 21.1 245 510-761 118-404 (695)
194 2xdw_A Prolyl endopeptidase; a 99.6 2.1E-13 7E-18 163.2 31.6 266 522-792 81-411 (710)
195 1rwi_B Serine/threonine-protei 99.6 1.7E-13 5.8E-18 142.4 25.4 231 556-792 25-261 (270)
196 3no2_A Uncharacterized protein 99.6 5.2E-13 1.8E-17 140.9 28.7 239 523-771 4-272 (276)
197 2mad_H Methylamine dehydrogena 99.6 4.4E-12 1.5E-16 139.9 37.1 244 504-760 59-356 (373)
198 3sjl_D Methylamine dehydrogena 99.6 5.8E-13 2E-17 146.2 28.2 265 500-775 67-384 (386)
199 3c75_H MADH, methylamine dehyd 99.6 5.1E-13 1.8E-17 149.0 26.7 266 522-792 82-399 (426)
200 2bkl_A Prolyl endopeptidase; m 99.6 2.1E-13 7.1E-18 162.8 25.1 265 521-792 76-394 (695)
201 2z2n_A Virginiamycin B lyase; 99.6 1.9E-11 6.5E-16 128.2 36.5 235 512-756 56-297 (299)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 4.2E-12 1.4E-16 134.8 30.8 239 509-755 14-300 (314)
203 1yr2_A Prolyl oligopeptidase; 99.5 4.7E-13 1.6E-17 161.0 25.0 243 511-760 161-447 (741)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 8.7E-12 3E-16 132.3 29.0 236 551-792 14-296 (314)
205 3no2_A Uncharacterized protein 99.5 5.4E-12 1.9E-16 133.1 26.0 207 565-782 4-230 (276)
206 1yr2_A Prolyl oligopeptidase; 99.5 1.4E-12 4.7E-17 156.9 24.2 266 521-792 115-438 (741)
207 2qe8_A Uncharacterized protein 99.5 1.5E-12 5.1E-17 141.6 21.3 265 503-787 10-313 (343)
208 3hrp_A Uncharacterized protein 99.5 3.3E-11 1.1E-15 134.5 32.7 230 513-752 131-408 (409)
209 3hrp_A Uncharacterized protein 99.5 3E-11 1E-15 134.8 31.2 228 555-791 131-406 (409)
210 3c75_H MADH, methylamine dehyd 99.5 5.4E-12 1.9E-16 140.7 24.5 251 499-760 106-408 (426)
211 3iuj_A Prolyl endopeptidase; h 99.4 3E-12 1E-16 152.8 22.7 244 510-761 126-412 (693)
212 1xip_A Nucleoporin NUP159; bet 99.4 3.9E-12 1.3E-16 140.0 21.2 173 514-698 39-232 (388)
213 2qc5_A Streptogramin B lactona 99.4 3E-10 1E-14 119.0 34.2 232 553-792 18-257 (300)
214 1mda_H Methylamine dehydrogena 99.4 2.1E-12 7E-17 141.7 17.3 260 499-774 53-366 (368)
215 3g4e_A Regucalcin; six bladed 99.4 3.8E-10 1.3E-14 119.7 34.0 229 508-744 8-262 (297)
216 3g4e_A Regucalcin; six bladed 99.4 1.9E-10 6.5E-15 122.1 31.6 227 550-784 8-261 (297)
217 2ghs_A AGR_C_1268P; regucalcin 99.4 1.1E-09 3.9E-14 117.9 34.5 220 514-745 50-293 (326)
218 2ghs_A AGR_C_1268P; regucalcin 99.3 9.5E-10 3.2E-14 118.5 32.4 219 556-784 50-291 (326)
219 3dr2_A Exported gluconolactona 99.3 1.9E-10 6.4E-15 122.6 26.0 234 546-790 36-302 (305)
220 3dr2_A Exported gluconolactona 99.3 5.4E-10 1.8E-14 119.0 28.9 232 507-751 39-303 (305)
221 1mda_H Methylamine dehydrogena 99.3 3.1E-11 1.1E-15 132.3 18.9 245 535-792 47-343 (368)
222 3q7m_A Lipoprotein YFGL, BAMB; 99.3 8.8E-10 3E-14 120.7 29.5 253 523-792 102-375 (376)
223 2hz6_A Endoplasmic reticulum t 99.3 2.5E-14 8.4E-19 157.7 -8.3 223 523-756 8-238 (369)
224 1kb0_A Quinohemoprotein alcoho 99.3 7.9E-10 2.7E-14 131.3 27.8 261 524-792 77-504 (677)
225 1yiq_A Quinohemoprotein alcoho 99.2 5.3E-10 1.8E-14 133.0 25.5 263 524-792 70-502 (689)
226 1xip_A Nucleoporin NUP159; bet 99.2 3.5E-09 1.2E-13 116.4 29.8 179 429-657 39-233 (388)
227 3q7m_A Lipoprotein YFGL, BAMB; 99.2 1.3E-09 4.4E-14 119.3 25.9 255 524-792 53-334 (376)
228 1npe_A Nidogen, entactin; glyc 99.2 2.9E-08 1E-12 103.2 33.3 245 525-777 2-263 (267)
229 3hxj_A Pyrrolo-quinoline quino 99.2 5.6E-10 1.9E-14 119.1 20.0 259 511-791 58-320 (330)
230 2ece_A 462AA long hypothetical 99.2 8.2E-09 2.8E-13 114.1 29.3 217 564-783 93-399 (462)
231 3iuj_A Prolyl endopeptidase; h 99.2 1.2E-09 4.1E-14 130.2 23.9 232 553-792 127-402 (693)
232 2ece_A 462AA long hypothetical 99.2 7.8E-09 2.7E-13 114.3 28.3 221 519-742 88-399 (462)
233 1kb0_A Quinohemoprotein alcoho 99.2 3.1E-09 1.1E-13 126.2 25.6 251 523-781 127-536 (677)
234 1yiq_A Quinohemoprotein alcoho 99.1 6.9E-09 2.4E-13 123.4 28.2 252 524-782 121-536 (689)
235 2qe8_A Uncharacterized protein 99.1 1.4E-09 4.9E-14 117.9 18.7 218 555-792 17-275 (343)
236 3hxj_A Pyrrolo-quinoline quino 99.1 9.3E-10 3.2E-14 117.4 16.5 254 518-792 25-281 (330)
237 2hz6_A Endoplasmic reticulum t 99.0 9.9E-11 3.4E-15 128.7 5.9 200 565-777 8-216 (369)
238 1fwx_A Nitrous oxide reductase 99.0 2E-09 6.8E-14 122.9 16.3 242 523-784 100-407 (595)
239 1kv9_A Type II quinohemoprotei 99.0 3.2E-08 1.1E-12 117.3 27.4 261 524-792 66-485 (668)
240 4a2l_A BT_4663, two-component 99.0 1.4E-06 4.8E-11 105.3 41.0 261 512-790 356-655 (795)
241 2iwa_A Glutamine cyclotransfer 99.0 1.1E-07 3.7E-12 98.9 26.6 203 545-755 10-238 (266)
242 3v9f_A Two-component system se 99.0 2.2E-06 7.6E-11 103.3 40.2 270 512-792 257-565 (781)
243 1npe_A Nidogen, entactin; glyc 99.0 6E-07 2E-11 93.2 30.7 220 567-792 2-235 (267)
244 4a2l_A BT_4663, two-component 99.0 1.3E-06 4.4E-11 105.6 38.0 263 512-791 262-567 (795)
245 2ad6_A Methanol dehydrogenase 98.9 2.7E-07 9.1E-12 107.3 29.7 259 524-792 62-491 (571)
246 3nol_A Glutamine cyclotransfer 98.9 1.7E-07 5.7E-12 96.7 23.2 191 546-744 33-245 (262)
247 1w6s_A Methanol dehydrogenase 98.9 3.8E-07 1.3E-11 106.2 29.0 261 524-792 62-500 (599)
248 2iwa_A Glutamine cyclotransfer 98.9 3E-07 1E-11 95.6 25.1 202 500-710 7-238 (266)
249 1fwx_A Nitrous oxide reductase 98.9 6.1E-08 2.1E-12 110.7 20.4 204 514-721 135-442 (595)
250 3v9f_A Two-component system se 98.9 9.5E-06 3.2E-10 97.8 40.9 271 513-792 66-389 (781)
251 2fp8_A Strictosidine synthase; 98.9 1E-06 3.5E-11 94.2 28.8 234 513-756 19-315 (322)
252 2p4o_A Hypothetical protein; p 98.8 1.9E-06 6.4E-11 91.6 29.7 230 546-785 24-278 (306)
253 3nok_A Glutaminyl cyclase; bet 98.8 3.4E-07 1.1E-11 94.4 22.6 181 556-744 56-255 (268)
254 2fp8_A Strictosidine synthase; 98.8 1.6E-06 5.5E-11 92.6 28.9 230 555-792 19-310 (322)
255 2p4o_A Hypothetical protein; p 98.8 7.5E-06 2.6E-10 86.9 33.2 234 502-745 22-279 (306)
256 1k3i_A Galactose oxidase precu 98.8 1.1E-07 3.7E-12 112.6 20.4 262 517-784 190-530 (656)
257 1kv9_A Type II quinohemoprotei 98.8 6.8E-07 2.3E-11 105.9 25.9 254 524-783 117-520 (668)
258 3mbr_X Glutamine cyclotransfer 98.8 1.7E-06 5.9E-11 88.3 25.2 191 545-744 10-224 (243)
259 1flg_A Protein (quinoprotein e 98.8 1.8E-06 6.1E-11 100.5 28.7 261 525-792 69-513 (582)
260 3nol_A Glutamine cyclotransfer 98.8 8E-07 2.8E-11 91.5 22.7 196 500-706 29-251 (262)
261 1ijq_A LDL receptor, low-densi 98.7 3.5E-05 1.2E-09 82.3 35.4 226 526-756 3-240 (316)
262 2ad6_A Methanol dehydrogenase 98.7 1.4E-06 4.8E-11 101.2 26.0 250 524-781 115-523 (571)
263 3v64_C Agrin; beta propeller, 98.7 1.3E-05 4.5E-10 87.0 31.8 237 511-756 32-277 (349)
264 3mbr_X Glutamine cyclotransfer 98.7 4.2E-06 1.4E-10 85.4 24.1 191 500-700 7-224 (243)
265 3v65_B Low-density lipoprotein 98.7 1.3E-05 4.6E-10 88.2 30.0 235 513-756 77-320 (386)
266 2xe4_A Oligopeptidase B; hydro 98.6 1.3E-06 4.3E-11 105.1 22.6 238 514-759 175-463 (751)
267 1flg_A Protein (quinoprotein e 98.6 3.7E-06 1.3E-10 97.8 25.8 253 524-781 117-546 (582)
268 3nok_A Glutaminyl cyclase; bet 98.6 6.1E-06 2.1E-10 85.0 23.8 176 515-700 57-255 (268)
269 1w6s_A Methanol dehydrogenase 98.6 3.8E-06 1.3E-10 97.8 25.0 248 526-781 123-533 (599)
270 3p5b_L Low density lipoprotein 98.6 7.5E-05 2.5E-09 82.6 32.9 226 526-756 85-322 (400)
271 3tc9_A Hypothetical hydrolase; 98.6 1.5E-05 5.2E-10 89.1 27.0 231 556-791 138-426 (430)
272 2xbg_A YCF48-like protein; pho 98.5 0.00012 4E-09 78.6 31.8 266 512-792 35-319 (327)
273 3qqz_A Putative uncharacterize 98.5 0.00021 7.2E-09 73.7 32.0 200 506-707 20-251 (255)
274 3v64_C Agrin; beta propeller, 98.5 0.00016 5.4E-09 78.4 32.9 226 558-791 37-271 (349)
275 3v65_B Low-density lipoprotein 98.5 9.3E-05 3.2E-09 81.4 31.4 225 559-791 81-314 (386)
276 1ijq_A LDL receptor, low-densi 98.5 0.00022 7.7E-09 75.9 33.5 217 568-791 3-234 (316)
277 3sov_A LRP-6, low-density lipo 98.5 7.6E-05 2.6E-09 79.8 29.7 219 533-756 12-240 (318)
278 3qqz_A Putative uncharacterize 98.5 3.7E-05 1.3E-09 79.4 26.1 197 592-791 21-249 (255)
279 4hw6_A Hypothetical protein, I 98.5 0.00026 8.9E-09 79.1 33.9 232 556-791 140-429 (433)
280 3tc9_A Hypothetical hydrolase; 98.5 4.8E-05 1.6E-09 85.0 27.3 234 513-753 137-429 (430)
281 4hw6_A Hypothetical protein, I 98.4 5.8E-05 2E-09 84.4 26.4 233 513-753 139-432 (433)
282 3m0c_C LDL receptor, low-densi 98.4 0.00032 1.1E-08 84.1 34.1 238 514-757 386-635 (791)
283 3p5b_L Low density lipoprotein 98.4 0.00039 1.3E-08 76.8 32.3 217 568-791 85-316 (400)
284 3sov_A LRP-6, low-density lipo 98.4 0.00026 8.8E-09 75.7 29.6 219 568-791 6-234 (318)
285 2xe4_A Oligopeptidase B; hydro 98.3 3E-05 1E-09 93.0 24.0 190 599-791 175-394 (751)
286 3amr_A 3-phytase; beta-propell 98.3 0.00014 4.8E-09 77.9 25.4 183 523-708 39-262 (355)
287 1k3i_A Galactose oxidase precu 98.2 3.3E-05 1.1E-09 91.2 20.8 226 559-785 190-476 (656)
288 3kya_A Putative phosphatase; s 98.2 0.00034 1.2E-08 78.9 27.1 239 514-758 140-479 (496)
289 3kya_A Putative phosphatase; s 98.2 0.00045 1.5E-08 77.9 28.1 230 556-791 140-471 (496)
290 3s94_A LRP-6, low-density lipo 98.1 0.0033 1.1E-07 73.4 34.7 274 513-790 84-418 (619)
291 3m0c_C LDL receptor, low-densi 98.1 0.0011 3.8E-08 79.5 30.5 201 510-713 421-636 (791)
292 2ism_A Putative oxidoreductase 98.1 0.00057 2E-08 74.0 25.0 224 512-741 30-332 (352)
293 4a0p_A LRP6, LRP-6, low-densit 98.1 0.021 7.1E-07 66.7 39.9 117 513-631 80-199 (628)
294 3ott_A Two-component system se 98.1 0.0071 2.4E-07 72.3 36.7 261 512-788 62-346 (758)
295 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0028 9.6E-08 74.1 32.2 218 568-791 8-233 (628)
296 3a9g_A Putative uncharacterize 98.0 0.002 6.9E-08 69.8 27.7 228 512-741 28-329 (354)
297 2xzh_A Clathrin heavy chain 1; 98.0 0.022 7.6E-07 60.0 35.9 247 533-789 48-326 (365)
298 2ism_A Putative oxidoreductase 98.0 0.0017 5.9E-08 70.2 26.9 227 554-786 30-337 (352)
299 2xbg_A YCF48-like protein; pho 98.0 0.0048 1.6E-07 65.9 29.9 230 512-752 79-320 (327)
300 1n7d_A LDL receptor, low-densi 98.0 1.2E-05 4.1E-10 95.6 10.2 224 532-759 384-619 (699)
301 3s94_A LRP-6, low-density lipo 98.0 0.0017 5.8E-08 75.8 28.1 221 532-757 16-246 (619)
302 1bpo_A Protein (clathrin); cla 98.0 0.038 1.3E-06 60.4 36.5 248 532-789 46-325 (494)
303 3ott_A Two-component system se 97.9 0.02 7E-07 68.3 37.2 265 512-791 145-444 (758)
304 3a9g_A Putative uncharacterize 97.9 0.0043 1.5E-07 67.1 28.4 224 554-783 28-330 (354)
305 3sre_A PON1, serum paraoxonase 97.9 0.0015 5.1E-08 70.6 24.3 193 556-752 51-296 (355)
306 2p9w_A MAL S 1 allergenic prot 97.9 0.0028 9.7E-08 67.2 25.7 200 508-708 8-264 (334)
307 3ei3_A DNA damage-binding prot 97.9 0.0051 1.7E-07 76.8 31.8 271 512-792 553-910 (1158)
308 3amr_A 3-phytase; beta-propell 97.9 0.0026 8.9E-08 68.1 25.0 179 611-792 41-260 (355)
309 2vpj_A Kelch-like protein 12; 97.9 0.0013 4.5E-08 68.9 21.8 227 523-759 14-283 (301)
310 2g8s_A Glucose/sorbosone dehyd 97.8 0.0047 1.6E-07 66.8 25.9 232 554-789 17-348 (353)
311 3sre_A PON1, serum paraoxonase 97.8 0.0097 3.3E-07 64.2 27.8 190 514-707 51-296 (355)
312 3ei3_A DNA damage-binding prot 97.8 0.052 1.8E-06 67.7 37.7 226 558-791 696-995 (1158)
313 2p9w_A MAL S 1 allergenic prot 97.8 0.0069 2.4E-07 64.3 25.4 206 551-758 9-269 (334)
314 1n7d_A LDL receptor, low-densi 97.8 9.2E-05 3.1E-09 87.9 12.3 196 513-710 406-615 (699)
315 3ii7_A Kelch-like protein 7; p 97.8 0.0037 1.3E-07 65.6 23.4 224 526-758 14-276 (306)
316 1bpo_A Protein (clathrin); cla 97.7 0.06 2.1E-06 58.8 32.4 233 518-758 71-335 (494)
317 3das_A Putative oxidoreductase 97.7 0.028 9.5E-07 60.4 29.2 232 549-783 26-326 (347)
318 2xzh_A Clathrin heavy chain 1; 97.7 0.077 2.6E-06 55.9 34.0 233 518-758 72-336 (365)
319 2g8s_A Glucose/sorbosone dehyd 97.7 0.0066 2.2E-07 65.6 24.6 225 513-740 18-339 (353)
320 3s25_A Hypothetical 7-bladed b 97.6 0.014 4.9E-07 61.6 25.7 234 521-783 22-280 (302)
321 2xn4_A Kelch-like protein 2; s 97.6 0.006 2E-07 63.8 21.4 225 524-760 16-282 (302)
322 3das_A Putative oxidoreductase 97.6 0.041 1.4E-06 59.1 28.1 236 504-741 23-325 (347)
323 3s25_A Hypothetical 7-bladed b 97.5 0.022 7.5E-07 60.1 24.5 178 517-709 57-255 (302)
324 3ii7_A Kelch-like protein 7; p 97.4 0.01 3.5E-07 62.2 20.8 208 567-785 13-257 (306)
325 2vpj_A Kelch-like protein 12; 97.4 0.0052 1.8E-07 64.2 18.4 210 565-786 14-264 (301)
326 2xn4_A Kelch-like protein 2; s 97.4 0.013 4.3E-07 61.3 20.8 212 566-786 16-262 (302)
327 1zgk_A Kelch-like ECH-associat 97.4 0.0059 2E-07 64.3 18.2 227 522-760 23-293 (308)
328 4asc_A Kelch repeat and BTB do 97.3 0.033 1.1E-06 58.5 23.9 225 526-760 7-283 (315)
329 1cru_A Protein (soluble quinop 97.3 0.12 4E-06 57.8 28.5 105 553-657 25-163 (454)
330 3pbp_A Nucleoporin NUP82; beta 97.3 0.012 4.1E-07 64.3 19.3 132 658-789 40-206 (452)
331 4b8c_D Glucose-repressible alc 97.3 6.2E-05 2.1E-09 89.8 1.4 14 761-774 706-719 (727)
332 2woz_A Kelch repeat and BTB do 97.2 0.051 1.8E-06 57.1 23.2 224 526-760 18-293 (318)
333 2uvk_A YJHT; unknown function, 97.1 0.014 5E-07 62.5 18.5 228 523-759 19-347 (357)
334 4asc_A Kelch repeat and BTB do 97.1 0.045 1.5E-06 57.5 21.7 210 568-785 7-253 (315)
335 1cru_A Protein (soluble quinop 97.1 0.41 1.4E-05 53.3 30.2 105 512-616 26-162 (454)
336 4b8c_D Glucose-repressible alc 97.1 8.4E-05 2.9E-09 88.7 -0.2 10 533-542 487-496 (727)
337 2be1_A Serine/threonine-protei 97.0 0.019 6.6E-07 61.4 17.8 190 567-759 11-236 (339)
338 3sbq_A Nitrous-oxide reductase 96.9 0.12 4E-06 58.2 23.1 256 526-784 72-454 (638)
339 2woz_A Kelch repeat and BTB do 96.8 0.1 3.4E-06 54.8 21.4 208 568-785 18-263 (318)
340 3b7f_A Glycosyl hydrolase, BNR 96.8 0.3 1E-05 53.0 25.4 254 512-773 54-391 (394)
341 1zgk_A Kelch-like ECH-associat 96.7 0.047 1.6E-06 57.2 17.6 181 523-710 70-288 (308)
342 2uvk_A YJHT; unknown function, 96.7 0.025 8.6E-07 60.5 15.7 217 565-786 19-327 (357)
343 1xi4_A Clathrin heavy chain; a 96.6 0.097 3.3E-06 65.1 21.5 217 532-758 46-293 (1630)
344 2zwa_A Leucine carboxyl methyl 96.6 0.091 3.1E-06 62.1 20.8 221 564-784 396-674 (695)
345 3b7f_A Glycosyl hydrolase, BNR 96.5 1.2 4E-05 48.2 29.1 258 525-790 23-367 (394)
346 2be1_A Serine/threonine-protei 96.5 0.061 2.1E-06 57.5 16.9 142 526-669 12-184 (339)
347 3pbp_A Nucleoporin NUP82; beta 96.4 0.19 6.6E-06 54.8 19.7 143 520-664 28-208 (452)
348 2wg3_C Hedgehog-interacting pr 96.3 2 6.9E-05 47.8 29.8 105 513-617 14-158 (463)
349 4hvt_A Ritya.17583.B, post-pro 96.3 0.21 7.2E-06 58.9 21.2 239 517-758 133-433 (711)
350 1xi4_A Clathrin heavy chain; a 96.0 0.14 4.7E-06 63.8 18.0 232 519-758 72-335 (1630)
351 1tl2_A L10, protein (tachylect 95.5 0.55 1.9E-05 46.7 16.9 143 639-789 42-204 (236)
352 3sbq_A Nitrous-oxide reductase 95.4 0.92 3.2E-05 51.1 20.4 223 568-792 72-405 (638)
353 1tl2_A L10, protein (tachylect 95.0 1.7 5.7E-05 43.3 18.8 175 565-748 3-204 (236)
354 2zwa_A Leucine carboxyl methyl 94.9 0.19 6.4E-06 59.3 13.8 149 523-672 451-639 (695)
355 2wg3_C Hedgehog-interacting pr 94.3 8 0.00027 42.9 30.3 226 555-783 14-354 (463)
356 3q6k_A 43.2 kDa salivary prote 94.3 7.1 0.00024 42.0 23.3 186 577-783 124-342 (381)
357 3kci_A Probable E3 ubiquitin-p 94.0 8 0.00027 41.6 27.4 229 556-791 54-341 (389)
358 1sqj_A OXG-RCBH, oligoxylogluc 94.0 6.6 0.00023 46.8 24.7 145 512-658 14-190 (789)
359 3uc1_A DNA gyrase subunit A; D 93.4 7.1 0.00024 41.1 21.1 260 525-786 4-321 (327)
360 3qhy_B Beta-lactamase inhibito 93.4 2.1 7.2E-05 44.2 16.7 239 515-776 26-265 (282)
361 3qhy_B Beta-lactamase inhibito 93.0 1.9 6.3E-05 44.6 15.6 215 555-791 24-242 (282)
362 3mvd_K Regulator of chromosome 92.8 13 0.00043 40.4 33.1 227 555-791 75-370 (423)
363 1sqj_A OXG-RCBH, oligoxylogluc 92.7 20 0.0007 42.5 28.2 143 554-699 14-189 (789)
364 3no0_A DNA gyrase subunit A; D 91.5 12 0.0004 38.4 19.3 206 513-754 24-246 (276)
365 2cn3_A Xyloglucanase, beta-1,4 91.3 27 0.00093 41.0 25.7 105 513-618 23-152 (737)
366 1wp5_A Topoisomerase IV; broke 89.8 22 0.00074 37.3 22.2 69 515-584 41-124 (323)
367 3uc1_A DNA gyrase subunit A; D 87.5 25 0.00084 36.9 18.4 178 611-790 4-223 (327)
368 3q6k_A 43.2 kDa salivary prote 86.7 37 0.0013 36.4 23.5 162 535-698 124-342 (381)
369 2cn3_A Xyloglucanase, beta-1,4 86.1 59 0.002 38.1 25.8 60 555-616 23-91 (737)
370 1suu_A DNA gyrase subunit A; t 84.9 39 0.0013 35.0 26.9 228 522-752 6-281 (312)
371 3l6v_A GYRA, DNA gyrase subuni 84.8 45 0.0015 35.6 24.5 230 521-753 4-315 (370)
372 1suu_A DNA gyrase subunit A; t 84.4 41 0.0014 34.9 26.8 189 563-754 5-231 (312)
373 4hvt_A Ritya.17583.B, post-pro 82.7 78 0.0027 36.9 21.4 178 605-789 137-373 (711)
374 3a0f_A Xyloglucanase; beta-pro 82.2 85 0.0029 36.9 25.7 145 553-700 19-202 (763)
375 1zi0_A DNA gyrase subunit A; b 81.7 52 0.0018 34.0 23.8 222 565-789 2-271 (307)
376 1zi0_A DNA gyrase subunit A; b 79.2 62 0.0021 33.4 25.3 229 523-754 2-277 (307)
377 3kci_A Probable E3 ubiquitin-p 78.1 75 0.0026 33.7 28.5 222 526-754 64-345 (389)
378 4gq2_M Nucleoporin NUP120; bet 77.0 78 0.0027 38.3 19.5 38 599-637 237-274 (950)
379 3no0_A DNA gyrase subunit A; D 76.3 70 0.0024 32.5 17.3 114 513-629 68-196 (276)
380 3a0f_A Xyloglucanase; beta-pro 74.3 1.4E+02 0.0048 35.0 28.8 147 511-659 19-203 (763)
381 4d9s_A UVB-resistance protein 73.7 1E+02 0.0034 33.0 35.5 266 513-791 16-353 (406)
382 3of7_A Regulator of chromosome 72.0 1.2E+02 0.0041 33.2 27.2 253 532-791 27-401 (473)
383 4gq2_M Nucleoporin NUP120; bet 71.9 31 0.001 41.9 14.1 40 512-551 235-274 (950)
384 3l6v_A GYRA, DNA gyrase subuni 68.4 1.3E+02 0.0043 32.0 25.4 225 562-789 3-310 (370)
385 3mvd_K Regulator of chromosome 65.2 1.5E+02 0.0051 31.7 31.1 229 515-754 77-374 (423)
386 1wp5_A Topoisomerase IV; broke 62.6 1.5E+02 0.0051 30.8 23.7 223 564-789 3-271 (323)
387 1a12_A RCC1, regulator of chro 54.7 2.2E+02 0.0075 30.2 32.9 225 555-791 59-361 (413)
388 3zwu_A Alkaline phosphatase PH 54.0 86 0.0029 35.7 12.4 57 641-697 479-548 (592)
389 3mez_B Mannose-specific lectin 53.0 1.1E+02 0.0036 26.4 10.4 26 683-709 59-84 (113)
390 3f7f_A Nucleoporin NUP120; nuc 51.6 3.4E+02 0.012 31.5 19.5 34 682-720 224-258 (729)
391 4fhn_B Nucleoporin NUP120; pro 50.6 4.3E+02 0.015 32.4 19.3 35 642-676 242-276 (1139)
392 1zvt_A Topoisomerase IV subuni 45.2 95 0.0032 31.1 10.0 68 723-791 83-159 (256)
393 4d9s_A UVB-resistance protein 44.7 3.1E+02 0.011 29.0 30.6 192 554-753 15-252 (406)
394 3zwu_A Alkaline phosphatase PH 44.5 57 0.002 37.1 9.0 59 514-572 477-548 (592)
395 4fhn_B Nucleoporin NUP120; pro 44.0 1.8E+02 0.0063 35.8 14.3 34 725-758 239-272 (1139)
396 4a9v_A PHOX; hydrolase, beta-p 43.8 75 0.0026 35.9 9.6 60 513-572 476-548 (592)
397 2zux_A YESW protein; beta-prop 43.5 4E+02 0.014 30.0 27.4 228 510-756 176-481 (591)
398 4h3o_A Lectin; cadmium, plant 39.2 1.7E+02 0.006 24.6 10.1 25 684-709 54-78 (105)
399 4a9v_A PHOX; hydrolase, beta-p 36.6 98 0.0033 35.0 9.1 59 724-782 476-548 (592)
400 3hx6_A Type 4 fimbrial biogene 36.5 5E+02 0.017 29.1 18.9 144 525-669 86-285 (570)
401 1zvt_A Topoisomerase IV subuni 35.8 3.4E+02 0.012 26.9 13.9 140 526-668 4-163 (256)
402 3f7f_A Nucleoporin NUP120; nuc 32.9 53 0.0018 38.2 6.3 38 513-552 222-259 (729)
403 3llp_A Fascin; beta-trefoil, a 31.6 5.6E+02 0.019 28.2 18.1 23 641-663 219-242 (493)
404 3mez_B Mannose-specific lectin 26.8 2.9E+02 0.01 23.4 9.4 25 602-629 60-84 (113)
405 1xks_A Nuclear pore complex pr 26.8 6.4E+02 0.022 27.3 20.2 97 612-710 111-238 (450)
406 3mez_A Mannose-specific lectin 24.9 1.1E+02 0.0038 26.1 5.7 24 684-707 53-76 (111)
407 2zux_A YESW protein; beta-prop 23.5 8.2E+02 0.028 27.5 22.6 48 669-719 352-407 (591)
408 3hx6_A Type 4 fimbrial biogene 20.7 9.2E+02 0.031 27.0 20.3 144 609-756 84-286 (570)
409 1a12_A RCC1, regulator of chro 20.5 7.4E+02 0.025 25.9 31.5 228 513-754 59-365 (413)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-42 Score=389.72 Aligned_cols=283 Identities=26% Similarity=0.492 Sum_probs=266.0
Q ss_pred eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003840 505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~ 584 (792)
...+.+|.+.|+|++|+|++.+||+|+.||+|+|||+.+++.+..+.+|...|++++|+|++++|++|+.|++|+|||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeE
Q 003840 585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVV 661 (792)
Q Consensus 585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I 661 (792)
+ ...+..+.+|...|.+++|+|++. +|++|+.|++|++||++++.++..+.+ .+..+.+++++..+++++.|+.|
T Consensus 181 ~-~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 181 G-FECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp S-SCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred C-CceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 7 678888999999999999999976 566999999999999999999888765 46778999999999999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCC--------------------CCEEEEEeCC-eEEEEECCCCCCcceEEEee
Q 003840 662 SILDAETQACRLSLQGHTKPIDSVCWDPS--------------------GELLASVSED-SVRVWTVGSGSEGECVHELS 720 (792)
Q Consensus 662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spd--------------------g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~ 720 (792)
++||++++++...+.+|...|.+++|+|+ +.+|++++.| .|++||++++ .++..+.
T Consensus 259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~ 335 (410)
T 1vyh_C 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLV 335 (410)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEE
T ss_pred EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEE
Confidence 99999999999999999999999999996 6789999999 9999999876 7888899
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 721 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 721 ~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+|...|.+++|+|++++|++++.|+.|+|||+.+++++ .+.+|...|++++|+|++.+|++|+.||.|+||+
T Consensus 336 ~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 99999999999999999999999999999999988766 7789999999999999999999999999999997
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.2e-42 Score=372.77 Aligned_cols=289 Identities=21% Similarity=0.422 Sum_probs=263.2
Q ss_pred CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcE
Q 003840 499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 578 (792)
Q Consensus 499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V 578 (792)
...++....+++|.+.|++++|++|+++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|
T Consensus 42 ~~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp CCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred cccchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeE
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCC---ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEE
Q 003840 579 RVWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRY 652 (792)
Q Consensus 579 ~IWdl~s~~---~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~l 652 (792)
+|||+.+.. .....+.+|...|.++.|++++. +++++.|+.|++||+++++++..+.+ .+.+++|+|++..+
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 199 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEE
Confidence 999998643 34567789999999999998753 66899999999999999998888754 57889999999999
Q ss_pred EEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec--CCCceEEE
Q 003840 653 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC--NGNKFHSC 729 (792)
Q Consensus 653 la~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~--~~~~i~si 729 (792)
++++.|+.|++||++++.++..+.+|...|++++|+|++++|++++.| .|++||++++ ..+..+.. +...|.++
T Consensus 200 ~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSV 276 (340)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEE
T ss_pred EEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEE
Confidence 999999999999999999999999999999999999999999999999 9999999875 44444432 23479999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 730 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+|+|++++|++++.|+.|++||+.+++.+ .+.+|.+.|.+++|+|++.+||+|+.||.|+|||
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999988876 7789999999999999999999999999999997
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-41 Score=366.74 Aligned_cols=284 Identities=18% Similarity=0.370 Sum_probs=260.0
Q ss_pred eeeeeecCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEECCCCce--eEEeccCCCCEEEEEECCCCCeEEEEeCCCc
Q 003840 504 EANSVRASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSFDKT 577 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspd----g~~Lasgs~Dg~I~vWdl~t~~~--~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~ 577 (792)
.++.+.+|.+.|++++|+++ +.+||+|+.|++|+|||+.+.+. ...+.+|...|.+++|++++.+|++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 34667899999999999985 67999999999999999987654 4568899999999999999999999999999
Q ss_pred EEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEE
Q 003840 578 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLA 654 (792)
Q Consensus 578 V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla 654 (792)
|+|||+.+ +..+..+..|...+.+++|+|++. +|++++.||.|++||+++++....+.. .+.+++|+|++.++++
T Consensus 104 i~lWd~~~-~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 104 IRLWDLEN-GKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEEEETTT-TEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCC-CCEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence 99999997 677888888999999999999976 566999999999999999988777654 4678999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC
Q 003840 655 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 733 (792)
Q Consensus 655 ~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp 733 (792)
++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.| .|+|||++++ .++..+.+|...|.+++|+|
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCP 258 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECT
T ss_pred EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---ceeEEEcCCCCceEEEEECC
Confidence 9999999999999999999999999999999999999999999999 9999999876 67788889999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 734 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 734 dg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
++.+|++++.|+.|+|||+.+++++ .+.+|...|++++|++++++|++++.||.|+|||
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 9999999999999999999999887 6789999999999999999999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.1e-40 Score=364.21 Aligned_cols=289 Identities=19% Similarity=0.353 Sum_probs=259.5
Q ss_pred cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEE
Q 003840 500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579 (792)
Q Consensus 500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~ 579 (792)
+.++....+.+|.+.|+|++|+||+++||+|+.||+|+|||..+++....+..|...|.+++|+|++.+|++|+.|+.|+
T Consensus 52 ~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 52 FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred cccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCC-----ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEec--CC
Q 003840 580 VWDADNPG-----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQP--HL 649 (792)
Q Consensus 580 IWdl~s~~-----~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp--~~ 649 (792)
+|++.... .....+..|...|.+++|++++. .|++++.|++|++||+++++++..+.+ .+.++.|++ ++
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g 210 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG 210 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCC
Confidence 99986421 34567778999999999999976 455999999999999999999888765 456778877 45
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec--CCCce
Q 003840 650 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC--NGNKF 726 (792)
Q Consensus 650 ~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~--~~~~i 726 (792)
..+++++.|+.|++||+++++++..+.+|...|++++|+|++.+|++++.| .|++||++.. ..+..+.. +...+
T Consensus 211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGA 287 (354)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCcccce
Confidence 789999999999999999999999999999999999999999999999999 9999999875 44444433 23468
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 727 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 727 ~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.+++|+|++.+|++++.|+.|+|||+.+++.+ .+.+|.+.|++++|+||+++|++|+.||.|+||+
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999999888876 6789999999999999999999999999999997
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-41 Score=376.76 Aligned_cols=291 Identities=17% Similarity=0.363 Sum_probs=258.2
Q ss_pred CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcE
Q 003840 499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 578 (792)
Q Consensus 499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V 578 (792)
...+...+.+.+|.+.|+|++|+|++++||+|+.||+|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|
T Consensus 53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred cceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcE
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCC------ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--------CCeeEEE
Q 003840 579 RVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQMR 644 (792)
Q Consensus 579 ~IWdl~s~~------~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--------~~~~~v~ 644 (792)
+|||+.+.. .....+.+|.+.|.++.|.|++...|++|+.|++|++||+++++++..+. ..+.++.
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence 999997521 23456789999999999999877778899999999999999999887662 3466788
Q ss_pred Eec-CCCEEEEEEcCCeEEEEECC-CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec
Q 003840 645 FQP-HLGRYLAAAAENVVSILDAE-TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 721 (792)
Q Consensus 645 ~sp-~~~~lla~s~dg~I~i~D~~-t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~ 721 (792)
|++ ++..+++++.|+.|++||++ ..+.+..+.+|...|++++|+|++.+|++++.| .|++||++++ ..+..+..
T Consensus 213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~ 289 (380)
T 3iz6_a 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNR 289 (380)
T ss_dssp ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECC
T ss_pred eecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecc
Confidence 876 67889999999999999998 457788899999999999999999999999999 9999999876 45555443
Q ss_pred CC-------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EE----cccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003840 722 NG-------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL----TAHEGLIAALAVSTETGYVASASHDKFVK 789 (792)
Q Consensus 722 ~~-------~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~----~~h~~~V~sl~fspdg~~LaSgs~DG~I~ 789 (792)
+. ..+.+++|+|++++|++|+.||.|++||+.+++.+ .+ .+|.+.|++++|+||+.+|++|+.||.|+
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~ 369 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLK 369 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEE
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEE
Confidence 32 24889999999999999999999999999988876 34 57999999999999999999999999999
Q ss_pred EeC
Q 003840 790 LWK 792 (792)
Q Consensus 790 IWd 792 (792)
||+
T Consensus 370 iW~ 372 (380)
T 3iz6_a 370 IWA 372 (380)
T ss_dssp EEE
T ss_pred EEe
Confidence 996
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.4e-40 Score=390.54 Aligned_cols=349 Identities=19% Similarity=0.287 Sum_probs=278.9
Q ss_pred cceEEEEeCCCeeeecCCC-----eeEeCCCcchhhcccccccCCCCCCceeee-ccCCCC-----CCCCCCCcceeccC
Q 003840 430 KPLMMFGTDGAGTLTSPSN-----QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDT-----DPRDAGGRGMDVSQ 498 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~-----~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~-l~~d~~-----~~~d~~~~~~d~~~ 498 (792)
...+.|+|||..+++.+.. .||.+.+++....+.. ....+.+. +.+++. ...|..+++|+...
T Consensus 106 v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~g------h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~ 179 (611)
T 1nr0_A 106 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG------QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP 179 (611)
T ss_dssp EEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC------CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT
T ss_pred eEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecC------CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC
Confidence 4468999999998876532 4544445543332221 12223333 333332 34677888888543
Q ss_pred CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-------cCCCCEEEEEECCCCCeEEE
Q 003840 499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-------EHSSLITDVRFSPSMPRLAT 571 (792)
Q Consensus 499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-------~h~~~V~~i~fspdg~~Las 571 (792)
.+....+.+|.+.|++++|+|||++||+|+.|++|+|||+.+++.+..+. +|...|++++|+|++++|++
T Consensus 180 ---~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s 256 (611)
T 1nr0_A 180 ---FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 256 (611)
T ss_dssp ---BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred ---CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEE
Confidence 46778899999999999999999999999999999999999999888884 79999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCc------------------------------------------eeEEecccCCCeEEEEEcCCC
Q 003840 572 SSFDKTVRVWDADNPGY------------------------------------------SLRTFMGHSASVMSLDFHPNK 609 (792)
Q Consensus 572 gs~Dg~V~IWdl~s~~~------------------------------------------~i~~~~~h~~~V~sl~fspd~ 609 (792)
++.|++|+|||+.+... ....+.+|...|++++|+|++
T Consensus 257 ~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg 336 (611)
T 1nr0_A 257 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG 336 (611)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC
Confidence 99999999999986221 123445799999999999997
Q ss_pred CeEEEEEeCCCcEEEEEcCCCeeEEEe-----------------------------------------------------
Q 003840 610 DDLICSCDGDGEIRYWSINNGSCTRVF----------------------------------------------------- 636 (792)
Q Consensus 610 ~~ll~sgs~Dg~I~iwdl~~~~~~~~~----------------------------------------------------- 636 (792)
. +|++++.|+.|++||+.++.+...+
T Consensus 337 ~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 415 (611)
T 1nr0_A 337 K-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL 415 (611)
T ss_dssp S-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE
T ss_pred C-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCc
Confidence 6 5569999999999999876543221
Q ss_pred --------------------------------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE--EEEecCCCCCe
Q 003840 637 --------------------------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC--RLSLQGHTKPI 682 (792)
Q Consensus 637 --------------------------------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~--~~~l~~h~~~V 682 (792)
...+.+++|+|++..+++++.|+.|++||+.++.. +.. .+|...|
T Consensus 416 ~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v 494 (611)
T 1nr0_A 416 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEI 494 (611)
T ss_dssp EEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCE
T ss_pred EEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCce
Confidence 01235688999999999999999999999987653 233 6799999
Q ss_pred EEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE--eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--E
Q 003840 683 DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE--LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--T 757 (792)
Q Consensus 683 ~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~--~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~--~ 757 (792)
++|+|+|+|++|++++.| .|++||+.+.. +++.. +..|...|.+++|+|++++|++++.|++|+|||+.++. .
T Consensus 495 ~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~ 572 (611)
T 1nr0_A 495 TSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP 572 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC
T ss_pred EEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccccc
Confidence 999999999999999999 99999997621 22222 33488999999999999999999999999999998764 2
Q ss_pred -EEEccc-CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 758 -MTLTAH-EGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 758 -~~~~~h-~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
..+.+| ...|++++|+|++. |++++.||+|+|||
T Consensus 573 ~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 573 IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred chhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence 355688 89999999999998 99999999999996
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-40 Score=391.75 Aligned_cols=350 Identities=16% Similarity=0.259 Sum_probs=277.1
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeee-ccCCCCCC------CC--CCCcceecc
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDTDP------RD--AGGRGMDVS 497 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~-l~~d~~~~------~d--~~~~~~d~~ 497 (792)
...+.|+|||.++++++.+ +|||+.+++..... .+ . .....+..+ +++++... .+ ..+.+|+.
T Consensus 62 v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~-~~-~--~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~- 136 (611)
T 1nr0_A 62 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT-TI-P--VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT- 136 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE-EE-E--CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-
T ss_pred eEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeE-ee-c--ccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC-
Confidence 4578999999999986544 89999765432111 11 1 112223333 33333211 11 23344442
Q ss_pred CCcceeeeeeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 003840 498 QGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 576 (792)
Q Consensus 498 ~~~~~~~~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg 576 (792)
+ +....+.+|...|++++|+|++. +|++|+.|++|++||..+++++..+.+|...|++++|+|++++|++|+.|+
T Consensus 137 -~---~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~ 212 (611)
T 1nr0_A 137 -G---TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 212 (611)
T ss_dssp -C---CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred -C---CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCC
Confidence 2 34567899999999999999987 699999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCceeEEec-------ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee------------
Q 003840 577 TVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------------ 637 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~~~-------~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~------------ 637 (792)
+|+|||+.+ +..+..+. +|...|.+++|+|++. +|++++.|++|++||+++++++..+.
T Consensus 213 ~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~ 290 (611)
T 1nr0_A 213 TIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 290 (611)
T ss_dssp CEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE
T ss_pred cEEEEECCC-CcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEE
Confidence 999999987 56666663 7999999999999976 56699999999999999887654332
Q ss_pred ----------------------------------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe-c------
Q 003840 638 ----------------------------------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-Q------ 676 (792)
Q Consensus 638 ----------------------------------~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l-~------ 676 (792)
..+.+++|+|++.++++++.|+.|++||+.+++....+ .
T Consensus 291 ~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v 370 (611)
T 1nr0_A 291 IWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI 370 (611)
T ss_dssp EECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred EEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceE
Confidence 24667899999999999999999999999876543321 0
Q ss_pred ---------------------------------------------------------------------------CCCCC
Q 003840 677 ---------------------------------------------------------------------------GHTKP 681 (792)
Q Consensus 677 ---------------------------------------------------------------------------~h~~~ 681 (792)
.|...
T Consensus 371 ~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~ 450 (611)
T 1nr0_A 371 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN 450 (611)
T ss_dssp EEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred EEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCC
Confidence 02345
Q ss_pred eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CcEEE
Q 003840 682 IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NKTMT 759 (792)
Q Consensus 682 V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~-~~~~~ 759 (792)
+.+++|+|+|++|++++.| .|++||+..+. ...+.. ..|...|.+++|+|++++|++++.|+.|++||+.+ ++++.
T Consensus 451 v~~va~spdg~~lasgs~D~~v~lwd~~~~~-~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~ 528 (611)
T 1nr0_A 451 SSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH 528 (611)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEEEETTE-EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred ceEEEEeCCCCEEEEeCCCCeEEEEEccCCc-eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee
Confidence 7789999999999999999 99999997642 122333 67889999999999999999999999999999987 54442
Q ss_pred ---EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 760 ---LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 760 ---~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+..|...|++++|+||+++||+|+.|++|+|||
T Consensus 529 ~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeeeeecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 234999999999999999999999999999996
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-39 Score=349.41 Aligned_cols=283 Identities=19% Similarity=0.331 Sum_probs=252.7
Q ss_pred eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
++..+++.+|.+.|++++|+|++++|++|+.||.|+|||++++..+..+..|...|.+++|++++++|++|+.|+.|+||
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEEee---CCeeEEEEec-CCCEEEEEE
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---GGTAQMRFQP-HLGRYLAAA 656 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~---~~~~~v~~sp-~~~~lla~s 656 (792)
|+.+ +..+..+.+|...|.+++|+|++. +|++|+.|++|++||++++. +...+. ..+.+++|+| ++..+++++
T Consensus 83 d~~~-~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 83 NYNT-GEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp ETTT-CCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred ECCC-CcEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9998 678888999999999999999976 56699999999999999874 444444 4578899999 567899999
Q ss_pred cCCeEEEEECCCCeEEEEec-CCCCCeEEEEEcC--CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe
Q 003840 657 AENVVSILDAETQACRLSLQ-GHTKPIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 732 (792)
Q Consensus 657 ~dg~I~i~D~~t~~~~~~l~-~h~~~V~sv~~sp--dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fs 732 (792)
.|+.|++||+++......+. +|...|..++|++ ++.+|++++.| .|++||++++ .++..+.+|...|.+++|+
T Consensus 161 ~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~ 237 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFH 237 (304)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEEC
Confidence 99999999998876655554 4668899999987 77899999999 9999999876 7889999999999999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC--EEEEEeCCCcEE
Q 003840 733 PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG--YVASASHDKFVK 789 (792)
Q Consensus 733 pdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~--~LaSgs~DG~I~ 789 (792)
|++.+|++++.||.|+|||+.+++++ .+..|...+++++|+|++. +|++|++||.+.
T Consensus 238 p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp SSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 99999999999999999999999887 6778899999999999875 688887777543
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=354.63 Aligned_cols=291 Identities=25% Similarity=0.434 Sum_probs=249.0
Q ss_pred ceeeeeeeecCCC-CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE---EeccCCCCEEEEEECCCCCeEEEEeCCC
Q 003840 501 SFKEANSVRASTS-KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT---NLEEHSSLITDVRFSPSMPRLATSSFDK 576 (792)
Q Consensus 501 ~~~~~~~l~~H~~-~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~---~l~~h~~~V~~i~fspdg~~Lasgs~Dg 576 (792)
.+..+..+.+|.+ .|++++|+|+|++||+|+.|++|+|||++++.... ...+|...|++++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 4567888999998 99999999999999999999999999998876432 2368999999999999999999999999
Q ss_pred cEEEEeCCCCC-ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---eEEEee---CCeeEEEEecCC
Q 003840 577 TVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFK---GGTAQMRFQPHL 649 (792)
Q Consensus 577 ~V~IWdl~s~~-~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~---~~~~~~---~~~~~v~~sp~~ 649 (792)
+|+|||+.... ..+..+.+|...|.+++|+|++. +|++|+.|+.|++||++.+. ++..+. ..+.+++|+|++
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence 99999998643 45778899999999999999976 66799999999999998764 334443 457889999999
Q ss_pred CEEEEEEcCCeEEEEECCCCe--EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC------------cc
Q 003840 650 GRYLAAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------------GE 714 (792)
Q Consensus 650 ~~lla~s~dg~I~i~D~~t~~--~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~------------~~ 714 (792)
..+++++.|+.|++||.+++. +...+.+|...|++++|+|++++|++++.| .|+|||+..... ..
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~ 242 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence 999999999999999998875 557889999999999999999999999999 999999743221 13
Q ss_pred eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--------EE--EEcccCCCeEEEEEeCCC-CEEEEE
Q 003840 715 CVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--------TM--TLTAHEGLIAALAVSTET-GYVASA 782 (792)
Q Consensus 715 ~i~~~~~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~--------~~--~~~~h~~~V~sl~fspdg-~~LaSg 782 (792)
++..+.. |...|.+++|++++..|++++.|+.|++|+...+. .. ...+|...|++++|+|++ .+||+|
T Consensus 243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~ 322 (345)
T 3fm0_A 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC 322 (345)
T ss_dssp EEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence 3444444 77889999999999999999999999999987642 11 235799999999999988 599999
Q ss_pred eCCCcEEEeC
Q 003840 783 SHDKFVKLWK 792 (792)
Q Consensus 783 s~DG~I~IWd 792 (792)
+.||.|+||+
T Consensus 323 s~Dg~v~~W~ 332 (345)
T 3fm0_A 323 SDDGEVAFWK 332 (345)
T ss_dssp ETTSCEEEEE
T ss_pred CCCCcEEEEE
Confidence 9999999996
No 10
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.8e-39 Score=357.57 Aligned_cols=281 Identities=27% Similarity=0.455 Sum_probs=248.2
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC------------------CEEEEEECCCCCeEE
Q 003840 509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS------------------LITDVRFSPSMPRLA 570 (792)
Q Consensus 509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~------------------~V~~i~fspdg~~La 570 (792)
.+|.+.|.|++|+|||++||+|+ ++.++||++.+++.+..+..|.. .|++++|+|++++|+
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 36999999999999999999986 78999999999998888876542 499999999999999
Q ss_pred EEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--CCeeEEEEec-
Q 003840 571 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQP- 647 (792)
Q Consensus 571 sgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp- 647 (792)
+|+.|+.|+|||+.+ +..+..+.+|...|.+++|+|++. +|++++.|++|++||++++++...+. ..+..++|+|
T Consensus 140 s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 217 (393)
T 1erj_A 140 TGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 217 (393)
T ss_dssp EEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred EEcCCCeEEEEECCC-CcEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECC
Confidence 999999999999987 677888999999999999999986 55699999999999999998877654 4678899999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEe-------cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC-------
Q 003840 648 HLGRYLAAAAENVVSILDAETQACRLSL-------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------- 712 (792)
Q Consensus 648 ~~~~lla~s~dg~I~i~D~~t~~~~~~l-------~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~------- 712 (792)
++.++++++.|+.|++||+++++.+..+ .+|...|.+++|+|++++|++++.| .|++||+++...
T Consensus 218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 297 (393)
T 1erj_A 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297 (393)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence 7888999999999999999999887776 5789999999999999999999999 999999976422
Q ss_pred --cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeC------CCCEEEEEe
Q 003840 713 --GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVST------ETGYVASAS 783 (792)
Q Consensus 713 --~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fsp------dg~~LaSgs 783 (792)
..+...+.+|...|.+++|++++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|++ ++.+||+|+
T Consensus 298 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 2456677889999999999999999999999999999999999877 6789999999999986 688999999
Q ss_pred CCCcEEEeC
Q 003840 784 HDKFVKLWK 792 (792)
Q Consensus 784 ~DG~I~IWd 792 (792)
.||.|+||+
T Consensus 378 ~Dg~i~iW~ 386 (393)
T 1erj_A 378 GDCKARIWK 386 (393)
T ss_dssp TTSEEEEEE
T ss_pred CCCcEEECc
Confidence 999999996
No 11
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-38 Score=370.55 Aligned_cols=342 Identities=26% Similarity=0.464 Sum_probs=286.0
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeee-ccCCCC----CCCCCCCcceeccCCcc
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDT----DPRDAGGRGMDVSQGFS 501 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~-l~~d~~----~~~d~~~~~~d~~~~~~ 501 (792)
...+.|++||.++++++.+ ++||.. ++.+..+.. ....+... +.++.. ...+...++|+...
T Consensus 224 v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~------~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--- 293 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG------HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--- 293 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECC------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEec------CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---
Confidence 3468899999998875444 899964 333222211 11222222 333321 23566677887532
Q ss_pred eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
+.+..+.+|...|++++|+|++++|++++.|+.|++||+.. ..+..+.+|...|++++|+|++++|++++.||.|++|
T Consensus 294 -~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 294 -QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp -CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred -cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 46678899999999999999999999999999999999765 5567788999999999999999999999999999999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcC
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE 658 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~d 658 (792)
|.. +..+..+.+|...|.+++|+|++.. |++++.|+.|++||.. ++.+..+. ..+.+++|+|++..+++++.|
T Consensus 372 ~~~--~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 372 NRN--GQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp ETT--CCEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cCC--CCEEEEecCCCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence 975 5678888999999999999999875 5589999999999964 55555554 457789999999999999999
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003840 659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~ 737 (792)
+.|++||. +++.+..+.+|...|++++|+|++++|++++.| .|++||.. + +++..+.+|...|++++|+|++++
T Consensus 448 ~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 448 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQT 522 (577)
T ss_dssp SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSC
T ss_pred CEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-C---CEEEEEeCCCCCEEEEEEcCCCCE
Confidence 99999996 567888899999999999999999999999999 99999963 3 678889999999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 738 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 738 L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
|++++.|+.|+|||........+.+|.+.|++++|+||+++|+|++.||+|+|||
T Consensus 523 l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 523 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999976554558889999999999999999999999999999998
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.2e-38 Score=342.02 Aligned_cols=287 Identities=24% Similarity=0.454 Sum_probs=257.3
Q ss_pred ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003840 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580 (792)
Q Consensus 501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I 580 (792)
.+.....+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++....+.+|...|.+++|+|++++|++++.|+.|+|
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 35667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc
Q 003840 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~ 657 (792)
||+++ +..+..+.+|...|.+++|+|++. +|++|+.|+.|++||+++++++..+. ..+.++.|++++..+++++.
T Consensus 92 wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 92 WDVSS-GKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp EETTT-CCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EECCC-CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 99997 677888999999999999999976 56699999999999999999888775 35778999999999999999
Q ss_pred CCeEEEEECCCCeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCce---EEEEEe
Q 003840 658 ENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF---HSCVFH 732 (792)
Q Consensus 658 dg~I~i~D~~t~~~~~~l~-~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i---~si~fs 732 (792)
|+.|++||+++++.+..+. .+...+.+++|+|++++|++++.| .|++||++++ +++..+..+.... ......
T Consensus 170 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEEC
T ss_pred CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEe
Confidence 9999999999998877764 466789999999999999999999 9999999876 6777777665543 222334
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEe--CCCcEEEeC
Q 003840 733 PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 792 (792)
Q Consensus 733 pdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs--~DG~I~IWd 792 (792)
+++.+|++++.||.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++ .|+.|+||+
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred CCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 67889999999999999999999877 7789999999999999999999997 699999995
No 13
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-38 Score=345.12 Aligned_cols=285 Identities=21% Similarity=0.393 Sum_probs=247.8
Q ss_pred cceeeeeeeecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCC-----CceeEEeccCCCCEEEEEECCCCCeEEEEe
Q 003840 500 FSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDT-----LKSKTNLEEHSSLITDVRFSPSMPRLATSS 573 (792)
Q Consensus 500 ~~~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t-----~~~~~~l~~h~~~V~~i~fspdg~~Lasgs 573 (792)
..+....++.+|.+.|++++|++++ ++|++|+.|++|++||+.. +..+..+.+|...|++++|++++++|++|+
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 3456778899999999999999965 8999999999999999864 345678899999999999999999999999
Q ss_pred CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCC-
Q 003840 574 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHL- 649 (792)
Q Consensus 574 ~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~- 649 (792)
.|++|+|||+.+ +..+..+.+|...|.+++|+|++. +|++|+.|++|++||++. .++..+. ..+..++|.|..
T Consensus 85 ~D~~v~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 85 WDKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp TTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC--
T ss_pred CCCEEEEEECCC-CCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC
Confidence 999999999997 778889999999999999999876 566999999999999975 4444443 356778888853
Q ss_pred -----CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC
Q 003840 650 -----GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 723 (792)
Q Consensus 650 -----~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~ 723 (792)
..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.| .|+|||+.++ +++..+.. .
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-~ 237 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA-Q 237 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-C
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC-C
Confidence 479999999999999999999999999999999999999999999999999 9999999876 56666654 4
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-E--------cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 724 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-L--------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 724 ~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-~--------~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
..+.+++|+|++.+|++++. +.|++|++.....+. + ..|...|.+++|+|||++|++|+.||.|+|||
T Consensus 238 ~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 67999999999998887765 569999998876652 2 23567899999999999999999999999996
No 14
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.7e-39 Score=353.38 Aligned_cols=242 Identities=19% Similarity=0.274 Sum_probs=211.9
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE----eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003840 509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN----LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~----l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~ 584 (792)
..|...|.+++|++|+ .|++|+.||+|+|||+++++.+.. +.+|...|++|+|+|++++|++|+.|++|+|||++
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 3466789999999996 788999999999999998876544 34899999999999999999999999999999999
Q ss_pred CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003840 585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 664 (792)
Q Consensus 585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~ 664 (792)
+ +..+..+.+|...|++++|++++..+|++|+.|++|++||+++++....+..
T Consensus 158 ~-~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------------------------- 210 (344)
T 4gqb_B 158 Q-QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-------------------------- 210 (344)
T ss_dssp T-TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---------------------------
T ss_pred C-CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec--------------------------
Confidence 7 7888999999999999999999988999999999999999988776544321
Q ss_pred ECCCCeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEE
Q 003840 665 DAETQACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVI 741 (792)
Q Consensus 665 D~~t~~~~~~l~~h~~~V~sv~~spd-g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg-~~L~sg 741 (792)
..|...+.+++|+|+ +++|++++.| .|+|||++++ +++..+.+|...|++++|+|++ ++|+++
T Consensus 211 -----------~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---~~~~~~~~h~~~v~~v~fsp~g~~~lasg 276 (344)
T 4gqb_B 211 -----------SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---SCVLSSAVHSQCVTGLVFSPHSVPFLASL 276 (344)
T ss_dssp --------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred -----------ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC---cEEEEEcCCCCCEEEEEEccCCCeEEEEE
Confidence 124456889999984 5688999988 9999999876 6778889999999999999998 578999
Q ss_pred EcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEeCCCcEEEeC
Q 003840 742 GCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASASHDKFVKLWK 792 (792)
Q Consensus 742 s~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~-~LaSgs~DG~I~IWd 792 (792)
+.|++|+|||+.+++++.+.+|.+.|++++|+|++. +|++|+.||+|++|+
T Consensus 277 s~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 277 SEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp ETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred eCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 999999999999999999999999999999999886 677999999999995
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.4e-38 Score=345.57 Aligned_cols=286 Identities=19% Similarity=0.364 Sum_probs=242.2
Q ss_pred cceeeeeeeecCCCCeEEEEE-----cC-CCCEEEEEeCCCeEEEEECCCC-------ceeEEeccCCCCEEEEEECCCC
Q 003840 500 FSFKEANSVRASTSKVICCHF-----SS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM 566 (792)
Q Consensus 500 ~~~~~~~~l~~H~~~V~~laf-----sp-dg~~Lasgs~Dg~I~vWdl~t~-------~~~~~l~~h~~~V~~i~fspdg 566 (792)
..++....+++|.+.|++++| ++ |+++||+|+.|++|+|||+.+. .....+.+|...|++++|+|++
T Consensus 9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN 88 (343)
T ss_dssp EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence 345677889999999999999 77 9999999999999999998753 4567788999999999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE-----eeCCee
Q 003840 567 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----FKGGTA 641 (792)
Q Consensus 567 ~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~-----~~~~~~ 641 (792)
.+|++|+.|++|+|||+++ +..+..+.+|...|.+++|+|++. +|++++.|+.|++||+........ ....+.
T Consensus 89 ~~l~s~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRT-GTTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVS 166 (343)
T ss_dssp TEEEEEETTSEEEEEETTS-SCEEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEE
T ss_pred CEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCceeeeecccCCCceee
Confidence 9999999999999999997 677888999999999999999976 556999999999999984433322 223577
Q ss_pred EEEEecCC----------CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003840 642 QMRFQPHL----------GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 710 (792)
Q Consensus 642 ~v~~sp~~----------~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~ 710 (792)
+++|+|++ .++++++.|+.|++|| ........+.+|...|.+++|+|+|++|++++.| .|++||+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~ 245 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 89999886 6899999999999999 4567778889999999999999999999999999 9999999543
Q ss_pred CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---EEc-----------ccCCCeEEEEEeCCC
Q 003840 711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLT-----------AHEGLIAALAVSTET 776 (792)
Q Consensus 711 ~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~---~~~-----------~h~~~V~sl~fspdg 776 (792)
.. ....+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++.. .+. +|...|.+++|+|++
T Consensus 246 ~~--~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 321 (343)
T 2xzm_R 246 TY--PQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG 321 (343)
T ss_dssp SS--CSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS
T ss_pred cc--cceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC
Confidence 22 22222 2455799999999998765 556788999999876532 222 678899999999999
Q ss_pred CEEEEEeCCCcEEEeC
Q 003840 777 GYVASASHDKFVKLWK 792 (792)
Q Consensus 777 ~~LaSgs~DG~I~IWd 792 (792)
++|++|+.||.|++|+
T Consensus 322 ~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 322 KKLFAGFTDGVIRTFS 337 (343)
T ss_dssp CCEEEEETTSEEEEEE
T ss_pred CeEEEecCCceEEEEE
Confidence 9999999999999996
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-38 Score=341.06 Aligned_cols=287 Identities=22% Similarity=0.342 Sum_probs=236.6
Q ss_pred eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEe-cc-CCCCEEEEEECCCCCeEEEEeCCCc
Q 003840 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNL-EE-HSSLITDVRFSPSMPRLATSSFDKT 577 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~--~~~~~l-~~-h~~~V~~i~fspdg~~Lasgs~Dg~ 577 (792)
++.+..+.+|.+.|++++|+++ +||+|+.|++|+|||+.++ ..+..+ .. |...|++|+|+|++++|++|+.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 4577889999999999999998 9999999999999999875 445556 44 9999999999999999999999999
Q ss_pred EEEEeCCCC------CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC----eeEEEee---CCeeEEE
Q 003840 578 VRVWDADNP------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVFK---GGTAQMR 644 (792)
Q Consensus 578 V~IWdl~s~------~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~~---~~~~~v~ 644 (792)
|+|||++.. ...+..+.+|...|.+++|+|++. +|++|+.|++|++||++.. +++..+. ..+.+++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999999632 245677889999999999999976 6679999999999999532 4555554 4578899
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCC--eEEEEecCCCCCeEEEEEcCC--CCEEEEEeCC-eEEEEECCCCCCc-----c
Q 003840 645 FQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPS--GELLASVSED-SVRVWTVGSGSEG-----E 714 (792)
Q Consensus 645 ~sp~~~~lla~s~dg~I~i~D~~t~--~~~~~l~~h~~~V~sv~~spd--g~~Las~s~d-~I~IwDl~s~~~~-----~ 714 (792)
|+|++..|++++.|+.|++||.+++ +++..+.+|...|.+++|+|+ +.+|++++.| .|++||+..+... .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 9999999999999999999999876 678889999999999999998 7799999999 9999999754221 3
Q ss_pred eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE--E-E-EcccCC-CeEEEEEeC--CCCEEEEEeCCC
Q 003840 715 CVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT--M-T-LTAHEG-LIAALAVST--ETGYVASASHDK 786 (792)
Q Consensus 715 ~i~~~~~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~--~-~-~~~h~~-~V~sl~fsp--dg~~LaSgs~DG 786 (792)
+...+.. |...|.+++|++++ +|++++.||.|+|||..+++. + . ..+|.. .|++++|+| ++.+||+|+.||
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 3444444 78899999999765 799999999999999988742 2 2 356877 899999999 789999999999
Q ss_pred cEEEeC
Q 003840 787 FVKLWK 792 (792)
Q Consensus 787 ~I~IWd 792 (792)
.|+|||
T Consensus 320 ~v~~W~ 325 (330)
T 2hes_X 320 IVNFWS 325 (330)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999996
No 17
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-38 Score=350.76 Aligned_cols=280 Identities=13% Similarity=0.177 Sum_probs=234.9
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCcee----EEeccCCCCEEEEEECCCCCeEEEEeCCCc
Q 003840 508 VRASTSKVICCHFSSDGKLLATGGH------DKKAVLWHTDTLKSK----TNLEEHSSLITDVRFSPSMPRLATSSFDKT 577 (792)
Q Consensus 508 l~~H~~~V~~lafspdg~~Lasgs~------Dg~I~vWdl~t~~~~----~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~ 577 (792)
...|...|++++|+|||++||+|+. |+.|++|+..++... .....|...|++++|+|++ .+++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-GILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-EEEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-CEEEEECCCE
Confidence 3579999999999999999999997 788999998776543 3345788999999999997 4667888999
Q ss_pred EEEEeCCCCCce---eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCC-
Q 003840 578 VRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLG- 650 (792)
Q Consensus 578 V~IWdl~s~~~~---i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~- 650 (792)
|+|||+.++... .....+|...|++++|+|++. +|++|+.|+.|++||+++++++..+.. .+.+++|++++.
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 999999874322 234457999999999999976 566999999999999999999888764 577899999875
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEe--cCCCCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCce
Q 003840 651 RYLAAAAENVVSILDAETQACRLSL--QGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 726 (792)
Q Consensus 651 ~lla~s~dg~I~i~D~~t~~~~~~l--~~h~~~V~sv~~spd-g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i 726 (792)
.+++++.|+.|++||+++++.+..+ ..|...+.+++|+|+ +.+|++++.| .|++||++++ .++..+..+...|
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v 272 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---DSAQTSAVHSQNI 272 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---GGCEEECCCSSCE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC---cEeEEEeccceeE
Confidence 6788889999999999998776554 346778999999997 4688899988 9999999876 6777888999999
Q ss_pred EEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeC-CCCEEEEEeCCCcEEEeC
Q 003840 727 HSCVFHPTY-PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK 792 (792)
Q Consensus 727 ~si~fspdg-~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fsp-dg~~LaSgs~DG~I~IWd 792 (792)
.+++|+|++ ++|++++.|++|+|||+.+++++...+|.+.|++|+|+| |+.+|++|+.||.|+||+
T Consensus 273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 273 TGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 999999987 578899999999999999999998889999999999998 899999999999999996
No 18
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-37 Score=336.48 Aligned_cols=283 Identities=18% Similarity=0.278 Sum_probs=254.2
Q ss_pred eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003840 503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd 582 (792)
.....+.+|.+.|+|++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCC-----CcEEEEEcCCCeeE-----------EEee---C--Cee
Q 003840 583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCT-----------RVFK---G--GTA 641 (792)
Q Consensus 583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D-----g~I~iwdl~~~~~~-----------~~~~---~--~~~ 641 (792)
+.+ +..+..+. +...|.+++|+|++..+ ++++.+ +.|++||+...... ..+. . .+.
T Consensus 103 ~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l-~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 103 VSN-GQCVATWK-SPVPVKRVEFSPCGNYF-LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp TTT-CCEEEEEE-CSSCEEEEEECTTSSEE-EEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred CCC-CcEEEEee-cCCCeEEEEEccCCCEE-EEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 997 56666666 88999999999998754 477777 99999999865421 1111 1 678
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 003840 642 QMRFQPHLGRYLAAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 719 (792)
Q Consensus 642 ~v~~sp~~~~lla~s~dg~I~i~D~~t-~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~ 719 (792)
+++|++++..+++++.|+.|++||+++ .+.+..+..|...|.+++|+|++++|++++.| .|++||++++ ..+..+
T Consensus 180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~ 256 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKY 256 (369)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEE
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---ceeeee
Confidence 899999999999999999999999999 78889999999999999999999999999988 9999999876 455555
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCC--------------eEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeC
Q 003840 720 SCNGNKFHSCVFHPTYPSLLVIGCYQ--------------SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASH 784 (792)
Q Consensus 720 ~~~~~~i~si~fspdg~~L~sgs~dg--------------~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~ 784 (792)
. +...+..++|+|++.++++++.++ .|++||+.+++.+ .+.+|...|++++|+|++++|++++.
T Consensus 257 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 335 (369)
T 3zwl_B 257 E-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE 335 (369)
T ss_dssp E-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred c-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC
Confidence 5 677899999999999999999988 8999999999887 67789999999999999999999999
Q ss_pred CCcEEEeC
Q 003840 785 DKFVKLWK 792 (792)
Q Consensus 785 DG~I~IWd 792 (792)
||.|+||+
T Consensus 336 dg~v~iw~ 343 (369)
T 3zwl_B 336 DGFIRLHH 343 (369)
T ss_dssp TSEEEEEE
T ss_pred CCeEEEEE
Confidence 99999996
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4e-37 Score=358.01 Aligned_cols=342 Identities=25% Similarity=0.432 Sum_probs=287.5
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeee-ccCCCC----CCCCCCCcceeccCCcc
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDT----DPRDAGGRGMDVSQGFS 501 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~-l~~d~~----~~~d~~~~~~d~~~~~~ 501 (792)
...+.|++|+.++++++.+ ++||.. ++....+.. ....+..+ +.++.. ...+..+++|+..
T Consensus 183 v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~------~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~---- 251 (577)
T 2ymu_A 183 VWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG------HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---- 251 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEEC------CSSCEEEEEECTTSSCEEEEETTSCEEEECTT----
T ss_pred eeeeeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEEec------CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC----
Confidence 3467889999998876554 889954 443332221 12223333 333332 2356677788743
Q ss_pred eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
.+.+..+.+|...|.+++|+||+++|++++.|+.|++||. +++.+..+.+|...|++++|+|++.+|++++.|+.|++|
T Consensus 252 ~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w 330 (577)
T 2ymu_A 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Confidence 3567788999999999999999999999999999999996 467788899999999999999999999999999999999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcC
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE 658 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~d 658 (792)
|+.. ..+..+.+|...|.+++|+|++. ++++++.|+.|++||.. ++++..+. ..+.+++|+|++.++++++.|
T Consensus 331 ~~~~--~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d 406 (577)
T 2ymu_A 331 NRNG--QHLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 406 (577)
T ss_dssp ETTS--CEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred eCCC--CeeEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCC
Confidence 9864 56778889999999999999976 56689999999999964 55565554 457889999999999999999
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003840 659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~ 737 (792)
+.|++||. +++.+..+.+|...|++++|+|++++|++++.| .|++||+.. ..+..+..|...|.+++|+|++++
T Consensus 407 ~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~----~~~~~~~~~~~~v~~~~~spd~~~ 481 (577)
T 2ymu_A 407 KTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQT 481 (577)
T ss_dssp SEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS----CEEEEEECCSSCEEEEEECTTSCE
T ss_pred CEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC----CEEEEEcCCCCCEEEEEEcCCCCE
Confidence 99999995 567888899999999999999999999999999 999999742 577888899999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 738 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 738 L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
|++++.|+.|+|||........+.+|...|++++|+||+++||+++.||.|+|||
T Consensus 482 las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 482 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp EEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 9999999999999976555558889999999999999999999999999999997
No 20
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5e-37 Score=329.87 Aligned_cols=279 Identities=19% Similarity=0.285 Sum_probs=249.1
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---EEec--cCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK---TNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~---~~l~--~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
...+|...|++++|+|++++|++++ ||.|+|||+.++... ..+. .|...|++++|+|++++|++++.||.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3448999999999999999999999 999999999876533 3333 789999999999999999999999999999
Q ss_pred eCCCCCc-eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc
Q 003840 582 DADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 582 dl~s~~~-~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~ 657 (792)
|+++... ....+..|...|.+++|+|++. ++++++.||.|++||+++++.+..+. ..+.+++|+|++..+++++.
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ECCCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 9987432 4567778999999999999876 56689999999999999999888765 45788999999999999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003840 658 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 736 (792)
Q Consensus 658 dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~ 736 (792)
|+.|++||+++++.+..+. +...+.+++|+|++++|++++.+ .|++||+++.. ...+..|...+.+++|+|+++
T Consensus 204 dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ 278 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGK 278 (337)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSS
T ss_pred CCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCC
Confidence 9999999999998888775 77889999999999999999988 99999998752 345677889999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 737 SLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 737 ~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+|++++.||.|++||+.+++.+....|...|.+++|++++++|++++.||.|++||
T Consensus 279 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 279 WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 99999999999999999999887778999999999999999999999999999996
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-37 Score=343.57 Aligned_cols=325 Identities=15% Similarity=0.190 Sum_probs=268.9
Q ss_pred cceEEEEeCCC-eeeecCCC---eeEeC----CCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcc
Q 003840 430 KPLMMFGTDGA-GTLTSPSN---QLWDD----KDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFS 501 (792)
Q Consensus 430 k~~l~~s~Dg~-~~~ss~s~---~lWD~----~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~ 501 (792)
...+.|+|||. ++++++.+ +|||+ .+++..-.+... ..+. ..
T Consensus 48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-----------~~~~-------------------~~ 97 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTII-----------AELR-------------------HP 97 (425)
T ss_dssp CSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEE-----------EEEE-------------------CC
T ss_pred eEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccc-----------cccc-------------------cc
Confidence 45789999999 88876553 88998 666521110000 0000 00
Q ss_pred eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
+.......+|.+.|++++|+|++++|++|+.||.|+||| .+++.+..+..|...|++++|+|++++|++++.||.|++|
T Consensus 98 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence 001122345788999999999999999999999999999 7788899999999999999999999999999999999999
Q ss_pred eCCCCCceeEEecccCCC---------------eEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEE
Q 003840 582 DADNPGYSLRTFMGHSAS---------------VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQM 643 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~---------------V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v 643 (792)
|+.+ +..+..+..+... |.+++|++++ .+++++.||.|++||+++++.+..+. ..+.++
T Consensus 177 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~ 253 (425)
T 1r5m_A 177 NVIS-GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVL 253 (425)
T ss_dssp ETTT-TEEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEE
T ss_pred ECCC-CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEE
Confidence 9987 6677777777766 9999999874 46689999999999999988777664 467889
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC
Q 003840 644 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 722 (792)
Q Consensus 644 ~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~ 722 (792)
+|++++..+++++.|+.|++||+++++.+..+..|...|.+++|+|++ +|++++.| .|++||++++ ..+..+..+
T Consensus 254 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~ 329 (425)
T 1r5m_A 254 EFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---TLLALSIVD 329 (425)
T ss_dssp EEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---EEEEEEECT
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---cEeEecccC
Confidence 999999999999999999999999999999999999999999999999 89999988 9999999876 778888888
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--------------------EE-EEcccCC--CeEEEEEeCCCCEE
Q 003840 723 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--------------------TM-TLTAHEG--LIAALAVSTETGYV 779 (792)
Q Consensus 723 ~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~--------------------~~-~~~~h~~--~V~sl~fspdg~~L 779 (792)
...+.+++|+|++++|++++.||.|++||+.+++ .+ .+..|.. .|++++|+|++++|
T Consensus 330 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 409 (425)
T 1r5m_A 330 GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKI 409 (425)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEE
T ss_pred CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceE
Confidence 9999999999999999999999999999998877 55 6778866 99999999999999
Q ss_pred EEEeCCCcEEEeC
Q 003840 780 ASASHDKFVKLWK 792 (792)
Q Consensus 780 aSgs~DG~I~IWd 792 (792)
++++.||.|+|||
T Consensus 410 ~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 410 SVAYSLQEGSVVA 422 (425)
T ss_dssp EEEESSSCCEEEE
T ss_pred EEEecCceEEEEe
Confidence 9999999999996
No 22
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.4e-36 Score=327.75 Aligned_cols=286 Identities=21% Similarity=0.376 Sum_probs=245.1
Q ss_pred cceeeeeeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc-----eeEEeccCCCCEEEEEECCCCCeEEEEe
Q 003840 500 FSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHSSLITDVRFSPSMPRLATSS 573 (792)
Q Consensus 500 ~~~~~~~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~t~~-----~~~~l~~h~~~V~~i~fspdg~~Lasgs 573 (792)
..+....+|+||.+.|+||+|+|+ +++||+|+.|++|+|||+.+.+ ....+.+|...|++++|+|++++|++++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 344566789999999999999997 6899999999999999987643 4667889999999999999999999999
Q ss_pred CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----eCCeeEEEEecCC
Q 003840 574 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHL 649 (792)
Q Consensus 574 ~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~sp~~ 649 (792)
.|+.|++|+... .........+...+..+.+++++. +|++++.|+.+++||+......... ...+..++|+++.
T Consensus 106 ~d~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 106 WDGTLRLWDLTT-GTTTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp TTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred ccccceEEeecc-cceeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 999999999987 666677777888999999999876 4569999999999999876654432 2356678887765
Q ss_pred --CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCce
Q 003840 650 --GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 726 (792)
Q Consensus 650 --~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i 726 (792)
..+++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++++.| .|++||+++. ..+..+.. ...+
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~-~~~v 259 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG-GDII 259 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-SSCE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---ceeeeecC-CceE
Confidence 456788889999999999999999999999999999999999999999999 9999999876 56666654 4579
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----------EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 727 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 727 ~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~----------~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.+++|+|++. +++++.|+.|+|||++++..+ ...+|...|++++|+||+++||+|+.||.|+|||
T Consensus 260 ~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 260 NALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 9999999876 566778999999999987655 2346889999999999999999999999999996
No 23
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-37 Score=348.00 Aligned_cols=273 Identities=22% Similarity=0.472 Sum_probs=246.6
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...+.|+|++.++++++.+ +|||+.+++. ..
T Consensus 111 V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~----------------------------------------------~~ 144 (410)
T 1vyh_C 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDF----------------------------------------------ER 144 (410)
T ss_dssp EEEEEECSSSSEEEEEESSSCEEEEETTTCCC----------------------------------------------CE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----------------------------------------------EE
Confidence 4568899999998886544 8898876542 24
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
.+.+|.+.|++++|++++++|++|+.|++|+|||+.+++++..+.+|...|++++|+|++.+|++|+.|++|++||+.+
T Consensus 145 ~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~- 223 (410)
T 1vyh_C 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT- 223 (410)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-
T ss_pred EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-
Confidence 5778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecC---------------
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPH--------------- 648 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~--------------- 648 (792)
+.++..+.+|...|.+++|++++. +|++|+.|+.|++||++++++...+.. .+.++.|+|+
T Consensus 224 ~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 1vyh_C 224 GYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302 (410)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred CcEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence 678889999999999999999976 667999999999999999988877654 5778899986
Q ss_pred -----CCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC
Q 003840 649 -----LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 722 (792)
Q Consensus 649 -----~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~ 722 (792)
+..+++++.|+.|++||++++.++..+.+|...|++++|+|++++|++++.| .|++||+.++ .++..+..|
T Consensus 303 ~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---~~~~~~~~h 379 (410)
T 1vyh_C 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAH 379 (410)
T ss_dssp -----CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECC
T ss_pred ccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCC
Confidence 5679999999999999999999999999999999999999999999999999 9999999776 677788899
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003840 723 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 753 (792)
Q Consensus 723 ~~~i~si~fspdg~~L~sgs~dg~I~IwDl~ 753 (792)
...|++++|+|++.+|++|+.|+.|+||+++
T Consensus 380 ~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 380 EHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999999999999999863
No 24
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-39 Score=355.40 Aligned_cols=280 Identities=19% Similarity=0.234 Sum_probs=246.4
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----CceeEEeccCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCC
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t----~~~~~~l~~h~~~V~~i~fspd-g~~Lasgs~Dg~V~IWdl~ 584 (792)
.|...|++++|+|++++|++|+.||.|+|||+.+ .+.+..+.+|...|++++|+|+ +.+|++++.||.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 5788899999999999999999999999999987 4588889999999999999998 8899999999999999998
Q ss_pred CCC------ce--eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---------CCeeEEEEec
Q 003840 585 NPG------YS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQMRFQP 647 (792)
Q Consensus 585 s~~------~~--i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---------~~~~~v~~sp 647 (792)
+.. .. +..+..|...|.+++|+|++..+|++++.||.|++||+++++.+..+. ..+.+++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 744 22 223467899999999999977788899999999999999999887764 3478899999
Q ss_pred CC-CEEEEEEcCC---eEEEEECCCC-eEEEEec-CCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 003840 648 HL-GRYLAAAAEN---VVSILDAETQ-ACRLSLQ-GHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHEL 719 (792)
Q Consensus 648 ~~-~~lla~s~dg---~I~i~D~~t~-~~~~~l~-~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~ 719 (792)
++ ..+++++.|+ .|++||++++ .++..+. +|...|.+++|+| ++++|++++.| .|++||++++ +++..+
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---~~~~~~ 301 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---EQLSQF 301 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---CEEEEE
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---ccceee
Confidence 97 5788888888 9999999986 6777777 8999999999999 99999999998 9999999876 778888
Q ss_pred ecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEE-EE-----------------------------------cc
Q 003840 720 SCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM-TL-----------------------------------TA 762 (792)
Q Consensus 720 ~~~~~~i~si~fspdg-~~L~sgs~dg~I~IwDl~~~~~~-~~-----------------------------------~~ 762 (792)
..|...|.+++|+|++ .+|++++.|+.|+|||+.+.... .. ..
T Consensus 302 ~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (416)
T 2pm9_A 302 PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTW 381 (416)
T ss_dssp ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCST
T ss_pred cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcc
Confidence 8999999999999999 89999999999999999876532 00 01
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 763 HEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 763 h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
|...|.+++|+|||++|++++.||.|+||+
T Consensus 382 ~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 382 YGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp TCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred ccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 667888999999999999999999999997
No 25
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4e-37 Score=340.04 Aligned_cols=284 Identities=15% Similarity=0.199 Sum_probs=252.5
Q ss_pred eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------eeEEeccCCCCEEEEEECCC----C---Ce
Q 003840 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPS----M---PR 568 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~------~~~~l~~h~~~V~~i~fspd----g---~~ 568 (792)
......+.+|.+.|+||+|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|++++|+++ + .+
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 345677889999999999999 799999999999999999988 78889999999999999999 9 99
Q ss_pred EEEEeCCCcEEEEeCCCCCce-----eEEeccc-----CCCeEEEEEc----CCCCeEEEEEeCCCcEEEEEcCC-----
Q 003840 569 LATSSFDKTVRVWDADNPGYS-----LRTFMGH-----SASVMSLDFH----PNKDDLICSCDGDGEIRYWSINN----- 629 (792)
Q Consensus 569 Lasgs~Dg~V~IWdl~s~~~~-----i~~~~~h-----~~~V~sl~fs----pd~~~ll~sgs~Dg~I~iwdl~~----- 629 (792)
|++++.||.|++||+.+ ... +..+..| ...|.+++|+ |++..+|++++.||.|++||+++
T Consensus 84 l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITR-EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 162 (397)
T ss_dssp EEEEETTSCEEEEEEEE-CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EEEEcCCCCEEEEEccC-CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence 99999999999999987 444 7778888 5999999999 98875377999999999999998
Q ss_pred -CeeEE-----Ee----------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC---C---CCCeEEEEE
Q 003840 630 -GSCTR-----VF----------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG---H---TKPIDSVCW 687 (792)
Q Consensus 630 -~~~~~-----~~----------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~---h---~~~V~sv~~ 687 (792)
++.+. .+ ...+.+++|++++ .+++++.|+.|++||+++++.+..+.. | ...|.+++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence 55554 44 4567889999999 999999999999999999999999998 8 999999999
Q ss_pred cCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeec-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003840 688 DPSGELLASVSED----SVRVWTVGSGSEGECVHELSC-------------NGNKFHSCVFHPTYPSLLVIGCYQSLELW 750 (792)
Q Consensus 688 spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~-------------~~~~i~si~fspdg~~L~sgs~dg~I~Iw 750 (792)
+|++++|++++.| .|++||++++ ..+..+.. |...|.+++|+|++++|++++.|+.|+||
T Consensus 242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 242 SPQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318 (397)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 9999999998875 8999999876 67777777 88999999999999999999999999999
Q ss_pred ECCCCcEE-EEc------cc---------------CCCeEEEEEeCCC----------CEEEEEeCCCcEEEeC
Q 003840 751 NMSENKTM-TLT------AH---------------EGLIAALAVSTET----------GYVASASHDKFVKLWK 792 (792)
Q Consensus 751 Dl~~~~~~-~~~------~h---------------~~~V~sl~fspdg----------~~LaSgs~DG~I~IWd 792 (792)
|+.+++.+ .+. .| ...|++++|+|++ ++|++++.||.|+|||
T Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 99999877 566 67 8999999999998 7999999999999996
No 26
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.8e-36 Score=325.09 Aligned_cols=276 Identities=20% Similarity=0.358 Sum_probs=240.2
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...+.|+|||.++++++.+ +|||+.+++ .+.
T Consensus 16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~----------------------------------------------~~~ 49 (304)
T 2ynn_A 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQV----------------------------------------------EVR 49 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTE----------------------------------------------EEE
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCc----------------------------------------------eeE
Confidence 4468999999998886544 788876643 334
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
.+..|...|.+++|++++++|++|+.|+.|+|||+.+++.+..+.+|...|++++|+|++.+|++|+.|++|+|||+++.
T Consensus 50 ~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 129 (304)
T 2ynn_A 50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129 (304)
T ss_dssp EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT
T ss_pred EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEec--CCCEEEEEEcCCe
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQP--HLGRYLAAAAENV 660 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp--~~~~lla~s~dg~ 660 (792)
......+.+|...|.+++|+|++..+|++|+.|++|++||++.......+. ..+..+.|.+ ++.++++++.|+.
T Consensus 130 ~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~ 209 (304)
T 2ynn_A 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209 (304)
T ss_dssp TEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE
T ss_pred cchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe
Confidence 567778899999999999999766788899999999999998877655543 3456677876 6678999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-EE
Q 003840 661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SL 738 (792)
Q Consensus 661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-~L 738 (792)
|++||+++++++..+.+|...|.+++|+|++.+|++++.| .|++||+.++ +++..+..+...+.+++|+|++. .+
T Consensus 210 i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (304)
T 2ynn_A 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNY 286 (304)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---CEEEEECCSSSSEEEEEECTTCGGGC
T ss_pred EEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC---ceeeeccCCCccEEEEEECCCCCceE
Confidence 9999999999999999999999999999999999999999 9999999876 77888888889999999999885 23
Q ss_pred EEEEcCCeEEEEECCC
Q 003840 739 LVIGCYQSLELWNMSE 754 (792)
Q Consensus 739 ~sgs~dg~I~IwDl~~ 754 (792)
++++.++.+.+|++.+
T Consensus 287 ~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 287 IASGFDNGFTVLSLGN 302 (304)
T ss_dssp EEEEETTEEEEEECC-
T ss_pred EEEecCCceEEEEecc
Confidence 4445566788888765
No 27
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8e-37 Score=340.65 Aligned_cols=309 Identities=17% Similarity=0.235 Sum_probs=259.0
Q ss_pred eEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeeee
Q 003840 432 LMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV 508 (792)
Q Consensus 432 ~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~l 508 (792)
.+.|+|||.++++++.+ ++||+.+++.... +
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~----------------------------------------------~ 94 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM----------------------------------------------L 94 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETTTT----------------------------------------------S
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccceeeE----------------------------------------------E
Confidence 46899999998886544 8899877654311 1
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc
Q 003840 509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 588 (792)
Q Consensus 509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~ 588 (792)
..| ..+.+.+|++++++||+|+.||.|+|||+.+++....+.+|...|++++|+|++++|++|+.|+.|++||+++ +.
T Consensus 95 ~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~ 172 (420)
T 3vl1_A 95 KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-GS 172 (420)
T ss_dssp CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CC
T ss_pred ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC-Cc
Confidence 122 3355567899999999999999999999999999988899999999999999999999999999999999997 66
Q ss_pred eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---------------------------Cee
Q 003840 589 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---------------------------GTA 641 (792)
Q Consensus 589 ~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---------------------------~~~ 641 (792)
.+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++++..+.. .+.
T Consensus 173 ~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~ 251 (420)
T 3vl1_A 173 NPRTLIGHRATVTDIAIIDRGR-NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKN 251 (420)
T ss_dssp CCEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred CceEEcCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCccc
Confidence 7788899999999999999976 556999999999999999998887752 233
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-CCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEE
Q 003840 642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHE 718 (792)
Q Consensus 642 ~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~-~h~~~V~sv~~spdg~-~Las~s~d-~I~IwDl~s~~~~~~i~~ 718 (792)
.++|+|++..+++++.||.|++||+++++.+..+. .|...|.+++|+|++. +|++++.| .|++||++++.. .+..
T Consensus 252 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--~~~~ 329 (420)
T 3vl1_A 252 NLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--PVGE 329 (420)
T ss_dssp TTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEE
T ss_pred ceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--chhh
Confidence 35567888899999999999999999998777765 4888999999999999 99999998 999999987632 3455
Q ss_pred eec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC----------cEEEEcccCCCeEEEEEeCCCC---EEEEEeC
Q 003840 719 LSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN----------KTMTLTAHEGLIAALAVSTETG---YVASASH 784 (792)
Q Consensus 719 ~~~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~----------~~~~~~~h~~~V~sl~fspdg~---~LaSgs~ 784 (792)
+.. +...+.++. .+++.+|++++.|+.|++||+... ....+..|.+.|.+++|+|++. .|++++.
T Consensus 330 ~~~~~~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~ 408 (420)
T 3vl1_A 330 FLINEGTPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK 408 (420)
T ss_dssp EEESTTSCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET
T ss_pred hhccCCCCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcC
Confidence 555 556677774 557889999999999999998762 2335678899999999999999 7888889
Q ss_pred CCcEEEeC
Q 003840 785 DKFVKLWK 792 (792)
Q Consensus 785 DG~I~IWd 792 (792)
+|.+.+|+
T Consensus 409 ~g~~~~~~ 416 (420)
T 3vl1_A 409 NNFCALYN 416 (420)
T ss_dssp TTEEEEEE
T ss_pred CceEEEEe
Confidence 99999995
No 28
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=327.11 Aligned_cols=244 Identities=20% Similarity=0.345 Sum_probs=228.7
Q ss_pred eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003840 505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~ 584 (792)
...+.+|...|.+++|++++.++++++.|++|+|||+.+++.+..+..|...+.+++|+|++++|++++.||.|++||++
T Consensus 73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~ 152 (321)
T 3ow8_A 73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE 152 (321)
T ss_dssp EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT
T ss_pred eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeE
Q 003840 585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVV 661 (792)
Q Consensus 585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I 661 (792)
+ +.....+..|...|.+++|+|+++ +|++|+.||.|++||+++++++..+.+ .+.+++|+|++..|++++.|+.|
T Consensus 153 ~-~~~~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i 230 (321)
T 3ow8_A 153 S-GKKEYSLDTRGKFILSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI 230 (321)
T ss_dssp T-CSEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCE
T ss_pred C-CceeEEecCCCceEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeE
Confidence 7 666777888999999999999976 566999999999999999999888764 57889999999999999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003840 662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 740 (792)
Q Consensus 662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s 740 (792)
++||+++++.+..+.+|...|.+++|+|++.+|++++.| .|+|||++++ .++..+..|...|.+++|+|++.+|++
T Consensus 231 ~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~g~~l~s 307 (321)
T 3ow8_A 231 KIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR---TCVHTFFDHQDQVWGVKYNGNGSKIVS 307 (321)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---EEEEEEcCCCCcEEEEEECCCCCEEEE
Confidence 999999999999999999999999999999999999999 9999999876 788899999999999999999999999
Q ss_pred EEcCCeEEEEECC
Q 003840 741 IGCYQSLELWNMS 753 (792)
Q Consensus 741 gs~dg~I~IwDl~ 753 (792)
++.|+.|+|||+.
T Consensus 308 ~~~d~~i~vwd~p 320 (321)
T 3ow8_A 308 VGDDQEIHIYDCP 320 (321)
T ss_dssp EETTCCEEEEECC
T ss_pred EeCCCeEEEEeCC
Confidence 9999999999974
No 29
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.5e-36 Score=358.30 Aligned_cols=284 Identities=23% Similarity=0.410 Sum_probs=244.3
Q ss_pred eeeeeeeecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-----ceeEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 003840 502 FKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSLITDVRFSPSMPRLATSSFD 575 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t~-----~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D 575 (792)
+.....+++|.+.|+||+|++++ ++|++|+.|++|+|||+.+. .....+.+|...|++++|+|++++|++|+.|
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 34556789999999999999865 79999999999999999753 3456788999999999999999999999999
Q ss_pred CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe------eCCeeEEEEecCC
Q 003840 576 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KGGTAQMRFQPHL 649 (792)
Q Consensus 576 g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~------~~~~~~v~~sp~~ 649 (792)
|+|+|||+.+ +..+..+.+|...|.+++|+|++.. |++|+.|++|++||+......... ...+.+++|+|++
T Consensus 452 g~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 452 GELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp SEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred CcEEEEECCC-CcceeEEeCCCCCEEEEEEeCCCCE-EEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 9999999987 6778889999999999999999765 559999999999998765444332 2347889999986
Q ss_pred --CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCce
Q 003840 650 --GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 726 (792)
Q Consensus 650 --~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i 726 (792)
..+++++.|+.|++||+++.+++..+.+|...|++++|+|++++|++++.| .|+|||++++ +++..+.. ...+
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~v 605 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSVI 605 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSCE
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEecC-CCcE
Confidence 578999999999999999999999999999999999999999999999999 9999999876 55655543 4679
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-Eccc-------------------CCCeEEEEEeCCCCEEEEEeCCC
Q 003840 727 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-LTAH-------------------EGLIAALAVSTETGYVASASHDK 786 (792)
Q Consensus 727 ~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-~~~h-------------------~~~V~sl~fspdg~~LaSgs~DG 786 (792)
.+++|+|++.+|++++ ++.|+|||+.++..+. +..+ ...|++++|+||+++|++|+.||
T Consensus 606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 606 HALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp EEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 9999999998776654 5679999999988762 2211 12478999999999999999999
Q ss_pred cEEEeC
Q 003840 787 FVKLWK 792 (792)
Q Consensus 787 ~I~IWd 792 (792)
.|+||+
T Consensus 685 ~i~iW~ 690 (694)
T 3dm0_A 685 VIRVWG 690 (694)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 999996
No 30
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.1e-36 Score=329.20 Aligned_cols=280 Identities=15% Similarity=0.221 Sum_probs=245.3
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003840 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 585 (792)
Q Consensus 508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s 585 (792)
+..|.+.|++++|+|++++||+|+.|+.|+|||+.+++ .+..+.+|...|++++|+|++++|++++.||.|++||+++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45699999999999999999999999999999999987 8889999999999999999999999999999999999987
Q ss_pred CCc-eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee---EEEe----eCCeeEEEEecCCCEEEEEEc
Q 003840 586 PGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVF----KGGTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 586 ~~~-~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~---~~~~----~~~~~~v~~sp~~~~lla~s~ 657 (792)
... ....+..|...|.+++|+|++. +|++++.|+.|++||++.+.. ...+ ...+.+++|+|++..+++++.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 321 2334467999999999999975 566899999999999998762 2222 356788999999999999999
Q ss_pred CCeEEEEEC------------------CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE
Q 003840 658 ENVVSILDA------------------ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE 718 (792)
Q Consensus 658 dg~I~i~D~------------------~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~ 718 (792)
|+.|++||+ ..++.+..+..|...|.+++|+|++++|++++.| .|++||++++ .++..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~ 239 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVAT 239 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceeEE
Confidence 999999995 4678899999999999999999999999999999 9999999876 67888
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--CcE---------------------------------------
Q 003840 719 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE--NKT--------------------------------------- 757 (792)
Q Consensus 719 ~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~--~~~--------------------------------------- 757 (792)
+..+...+.+++|+|++.+|+++ .|+.|++||+.+ +..
T Consensus 240 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 1k8k_C 240 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 318 (372)
T ss_dssp EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence 88899999999999999977777 999999999987 421
Q ss_pred EEE-cccCCCeEEEEEe-CCC---CEEEEEeCCCcEEEeC
Q 003840 758 MTL-TAHEGLIAALAVS-TET---GYVASASHDKFVKLWK 792 (792)
Q Consensus 758 ~~~-~~h~~~V~sl~fs-pdg---~~LaSgs~DG~I~IWd 792 (792)
..+ .+|...|++++|. +++ .+|++|+.||.|+|||
T Consensus 319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 122 4899999999976 676 8999999999999996
No 31
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.7e-35 Score=343.98 Aligned_cols=351 Identities=13% Similarity=0.178 Sum_probs=268.4
Q ss_pred CcceEEEEeCCCeeeecCCC--eeEeCCCc----chhhcccccccCCCCCCc-eeee-ccC--CCC----CCCCCCCcce
Q 003840 429 SKPLMMFGTDGAGTLTSPSN--QLWDDKDL----ELRADMDRLVEDGSLDDN-VESF-LSH--DDT----DPRDAGGRGM 494 (792)
Q Consensus 429 ~k~~l~~s~Dg~~~~ss~s~--~lWD~~tg----~~~~~~~~~~~~g~~d~~-v~~~-l~~--d~~----~~~d~~~~~~ 494 (792)
....+.|+|||.++++++.. .|||+.++ +....+.. .... +.+. +.+ ++. ...|+.+++|
T Consensus 20 ~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~------h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG------HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECT------TTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEec------CCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 34468999999988875544 88999987 54433321 1122 3332 333 321 2345667777
Q ss_pred eccCCc-----ceee--------------------------------------------eeeeecCCCCeEEEEEcCCCC
Q 003840 495 DVSQGF-----SFKE--------------------------------------------ANSVRASTSKVICCHFSSDGK 525 (792)
Q Consensus 495 d~~~~~-----~~~~--------------------------------------------~~~l~~H~~~V~~lafspdg~ 525 (792)
++..+. ..+. +..+.+|...|.+++|+|+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~ 173 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP 173 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSS
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCC
Confidence 774320 1122 233445666666666666665
Q ss_pred -EEEEEeCCCeEEEEECCCCceeEEeccCCC---CEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCceeEEe-c---cc
Q 003840 526 -LLATGGHDKKAVLWHTDTLKSKTNLEEHSS---LITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTF-M---GH 596 (792)
Q Consensus 526 -~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~---~V~~i~fspd-g~~Lasgs~Dg~V~IWdl~s~~~~i~~~-~---~h 596 (792)
+|++++.|+.|++||+.+++.+..+..|.. .|++++|+|+ +++|++++.||.|++||+.+ +..+..+ . .|
T Consensus 174 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~ 252 (615)
T 1pgu_A 174 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPV 252 (615)
T ss_dssp CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCC
T ss_pred cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCEeEEeccccccc
Confidence 788888899999999999999999999999 9999999999 99999999999999999987 6677777 5 89
Q ss_pred CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC-------eeEEEEe-----------------------
Q 003840 597 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------TAQMRFQ----------------------- 646 (792)
Q Consensus 597 ~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-------~~~v~~s----------------------- 646 (792)
...|.+++|+ ++. +|++++.|+.|++||+++++++..+... +..+.|.
T Consensus 253 ~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~ 330 (615)
T 1pgu_A 253 QGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE 330 (615)
T ss_dssp CSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEE
T ss_pred CCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCc
Confidence 9999999999 654 6679999999999999987766544322 0111110
Q ss_pred --------------------------------------------------cC----------------------------
Q 003840 647 --------------------------------------------------PH---------------------------- 648 (792)
Q Consensus 647 --------------------------------------------------p~---------------------------- 648 (792)
++
T Consensus 331 ~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 410 (615)
T 1pgu_A 331 VLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPK 410 (615)
T ss_dssp EEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEE
T ss_pred EEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCce
Confidence 00
Q ss_pred ---------------------------------------------CCEEEEEEc-CCeEEEEECCCCeEE-EEecCCCCC
Q 003840 649 ---------------------------------------------LGRYLAAAA-ENVVSILDAETQACR-LSLQGHTKP 681 (792)
Q Consensus 649 ---------------------------------------------~~~lla~s~-dg~I~i~D~~t~~~~-~~l~~h~~~ 681 (792)
+..+++++. |+.|++||+.+++.. ..+..|...
T Consensus 411 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 490 (615)
T 1pgu_A 411 VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK 490 (615)
T ss_dssp EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSC
T ss_pred EEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCc
Confidence 233444444 666666666665444 556678999
Q ss_pred eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec-CCCceEEEEEeC----------CCCEEEEEEcCCeEEE
Q 003840 682 IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHP----------TYPSLLVIGCYQSLEL 749 (792)
Q Consensus 682 V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~-~~~~i~si~fsp----------dg~~L~sgs~dg~I~I 749 (792)
|++++|+|++++|++++.| .|++||+.++ +.+..+.. |...|.+++|+| ++++|++++.|+.|++
T Consensus 491 v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~i 567 (615)
T 1pgu_A 491 PSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 567 (615)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred eEEEEECCCCCEEEEcCCCCeEEEeeCCCC---cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEE
Confidence 9999999999999999998 9999999876 67777777 899999999999 9999999999999999
Q ss_pred EECCCC-cEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 750 WNMSEN-KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 750 wDl~~~-~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
||+.++ +.+ .+.+|...|++++|+|++. |++++.||.|+|||
T Consensus 568 w~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 568 YSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp EESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred EECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 999987 444 6778999999999999999 99999999999996
No 32
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2e-36 Score=329.06 Aligned_cols=290 Identities=17% Similarity=0.307 Sum_probs=247.8
Q ss_pred cceeeeeee-ecCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEECCCCceeEEecc-----CCCCEEEEEECCC----
Q 003840 500 FSFKEANSV-RASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKSKTNLEE-----HSSLITDVRFSPS---- 565 (792)
Q Consensus 500 ~~~~~~~~l-~~H~~~V~~lafspd----g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-----h~~~V~~i~fspd---- 565 (792)
+.|+....+ .+|.+.|++++|+|+ ..++++++.++.|+|||+.+++.+..+.. |...|++++|+|+
T Consensus 5 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 84 (366)
T 3k26_A 5 YSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTS 84 (366)
T ss_dssp CCCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTC
T ss_pred eEEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCC
Confidence 344444444 489999999999984 45677777788999999998887777664 5678999999998
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe------eCC
Q 003840 566 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KGG 639 (792)
Q Consensus 566 g~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~------~~~ 639 (792)
+.+|++|+.||.|+|||+.+ +..+..+.+|...|.+++|+|++..+|++++.||.|++||+++++.+..+ ...
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 163 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPIT-MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 163 (366)
T ss_dssp CEEEEEEETTCEEEEECTTT-CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred CCEEEEecCCCEEEEEEchh-ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence 66999999999999999997 67788888999999999999944567779999999999999999988776 246
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe----------------------------cCCCCCeEEEEEcCCC
Q 003840 640 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL----------------------------QGHTKPIDSVCWDPSG 691 (792)
Q Consensus 640 ~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l----------------------------~~h~~~V~sv~~spdg 691 (792)
+.+++|+|++..+++++.|+.|++||+++++.+..+ ..|...|.+++|+ +
T Consensus 164 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 241 (366)
T 3k26_A 164 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G 241 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred eeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence 788999999999999999999999999987544333 3399999999998 7
Q ss_pred CEEEEEeCC-eEEEEECCCCCC-----------cceEEEeecCCCceEEEEEeCC--CCEEEEEEcCCeEEEEECCCCcE
Q 003840 692 ELLASVSED-SVRVWTVGSGSE-----------GECVHELSCNGNKFHSCVFHPT--YPSLLVIGCYQSLELWNMSENKT 757 (792)
Q Consensus 692 ~~Las~s~d-~I~IwDl~s~~~-----------~~~i~~~~~~~~~i~si~fspd--g~~L~sgs~dg~I~IwDl~~~~~ 757 (792)
++|++++.| .|++||+.+... ...+..+..|...|.+++|+|+ +.+|++++.||.|++||+.+++.
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 799999988 999999987532 2447778888899999999999 99999999999999999998742
Q ss_pred -----EEEccc--CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 758 -----MTLTAH--EGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 758 -----~~~~~h--~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
..+..| ...|++++|+|++++|++++.||.|+|||
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 256666 79999999999999999999999999996
No 33
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-35 Score=311.88 Aligned_cols=278 Identities=15% Similarity=0.251 Sum_probs=246.2
Q ss_pred ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003840 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580 (792)
Q Consensus 501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I 580 (792)
.++....+.+|.+.|+|++| +++++|++|+.||.|+|||+.+++....+..|...|.+++|+|++++|++++.||.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 45678899999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCC--ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEec-CCCEEEE
Q 003840 581 WDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQP-HLGRYLA 654 (792)
Q Consensus 581 Wdl~s~~--~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp-~~~~lla 654 (792)
|++.... ..+..+.+|...|.+++|. + .++++++.||.|++|| .++.+..+. ..+..+.|.+ ++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9998633 5577788999999999994 3 3677999999999999 555555554 4567788888 8899999
Q ss_pred EEcCCeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe
Q 003840 655 AAAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 732 (792)
Q Consensus 655 ~s~dg~I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fs 732 (792)
++.|+.|++|| ..+.+..+.. |...|.+++|++++. |++++.| .|++||++++ +.+..+..|...+.+++|+
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEC
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhhhcCCceEEEEEEe
Confidence 99999999999 5566677776 899999999999998 7778877 9999999876 6788888899999999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 733 PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 733 pdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
|++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+++++ |++++.||.|+|||
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 999 5999999999999999999877 6778999999999999998 56789999999996
No 34
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.3e-36 Score=331.31 Aligned_cols=244 Identities=17% Similarity=0.286 Sum_probs=206.7
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE----EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT----NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~----~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
....+|...|++++|+|+++ +++++.||+|+|||+.+++... ...+|...|++|+|+|++++|++|+.|+.|+||
T Consensus 88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34567889999999999985 5567789999999998876543 345799999999999999999999999999999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----CCeeEEEEecCCC-EEEEE
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLG-RYLAA 655 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~~~~~v~~sp~~~-~lla~ 655 (792)
|+++ +..+..+.+|...|++++|++++..++++++.||.|++||+++++....+. ..+.+++|+|+++ .++++
T Consensus 167 d~~~-~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g 245 (357)
T 4g56_B 167 DLSQ-KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245 (357)
T ss_dssp ETTT-TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEE
T ss_pred ECCC-CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEe
Confidence 9997 778889999999999999999988888899999999999999988765543 3467899999865 56678
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC
Q 003840 656 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 733 (792)
Q Consensus 656 s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp 733 (792)
+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++++.| +|+|||++++ +++.. ..|...|++++|+|
T Consensus 246 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---~~~~~-~~H~~~V~~vafsP 321 (357)
T 4g56_B 246 DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---EVFRD-LSHRDFVTGVAWSP 321 (357)
T ss_dssp ESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---EEEEE-CCCSSCEEEEEECS
T ss_pred ecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---cEeEE-CCCCCCEEEEEEeC
Confidence 889999999999999999999999999999999987 589999998 9999999876 44444 47899999999998
Q ss_pred -CCCEEEEEEcCCeEEEEECCCC
Q 003840 734 -TYPSLLVIGCYQSLELWNMSEN 755 (792)
Q Consensus 734 -dg~~L~sgs~dg~I~IwDl~~~ 755 (792)
++.+|++++.|+.|++||+...
T Consensus 322 ~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 322 LDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSTTEEEEEETTSCEEEEECC--
T ss_pred CCCCEEEEEcCCCeEEEEECCCC
Confidence 7999999999999999999754
No 35
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-35 Score=328.70 Aligned_cols=281 Identities=17% Similarity=0.277 Sum_probs=247.3
Q ss_pred eeeeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEC----CCCc------eeEEecc----------CCCCEEEEEE
Q 003840 504 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHT----DTLK------SKTNLEE----------HSSLITDVRF 562 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl----~t~~------~~~~l~~----------h~~~V~~i~f 562 (792)
.......|.+.|+|++|+|+|+ +||+|+.||.|+|||+ .+++ ....+.. |...|++++|
T Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (425)
T 1r5m_A 37 KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW 116 (425)
T ss_dssp EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE
T ss_pred hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE
Confidence 3344556779999999999999 9999999999999999 8887 4555554 6889999999
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---
Q 003840 563 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--- 639 (792)
Q Consensus 563 spdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~--- 639 (792)
+|++++|++++.||.|+|||.. +..+..+..|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+...
T Consensus 117 s~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 193 (425)
T 1r5m_A 117 SHDGNSIVTGVENGELRLWNKT--GALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETG 193 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEETT--SCEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred cCCCCEEEEEeCCCeEEEEeCC--CCeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccC
Confidence 9999999999999999999943 677888999999999999999976 5558899999999999999988776532
Q ss_pred ---------------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEE
Q 003840 640 ---------------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVR 703 (792)
Q Consensus 640 ---------------~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~ 703 (792)
+.++.|+++ +.+++++.++.|++||+++++.+..+..|...|.+++|+|++++|++++.| .|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 272 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR 272 (425)
T ss_dssp ------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 667888887 678999999999999999999999999999999999999999999999988 999
Q ss_pred EEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 003840 704 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 782 (792)
Q Consensus 704 IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSg 782 (792)
+||++++ ..+..+..+...+.+++|+|++ +|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++++|+++
T Consensus 273 i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 348 (425)
T 1r5m_A 273 IWHGGNG---NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA 348 (425)
T ss_dssp EECSSSB---SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEE
T ss_pred EEECCCC---ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEE
Confidence 9999876 5666777888999999999999 9999999999999999998877 667899999999999999999999
Q ss_pred eCCCcEEEeC
Q 003840 783 SHDKFVKLWK 792 (792)
Q Consensus 783 s~DG~I~IWd 792 (792)
+.||.|+|||
T Consensus 349 ~~dg~i~i~~ 358 (425)
T 1r5m_A 349 FMDGQVNVYD 358 (425)
T ss_dssp ETTSCEEEEE
T ss_pred ECCCeEEEEE
Confidence 9999999996
No 36
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8e-36 Score=323.59 Aligned_cols=285 Identities=16% Similarity=0.203 Sum_probs=240.3
Q ss_pred eeeecCCCCeEEEEEcCCCCEE-EEEeC---CCeEEEEECCCCceeEEec-cCCCCEEEEEECCC---CCeEEEEeCCCc
Q 003840 506 NSVRASTSKVICCHFSSDGKLL-ATGGH---DKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPS---MPRLATSSFDKT 577 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~L-asgs~---Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspd---g~~Lasgs~Dg~ 577 (792)
..+++|.+.|++++|+|++..| ++|+. ||.|+|||+.+++...... +|...|++++|+|+ +.+|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 4567899999999999999655 55655 8999999999988765543 79999999999998 699999999999
Q ss_pred EEEEeCCCCCceeEEecccCCCeEEEEE------cCCCCeEEEEEeCCCcEEEEEcCCCe-eEEEeeC-------CeeEE
Q 003840 578 VRVWDADNPGYSLRTFMGHSASVMSLDF------HPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKG-------GTAQM 643 (792)
Q Consensus 578 V~IWdl~s~~~~i~~~~~h~~~V~sl~f------spd~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~-------~~~~v 643 (792)
|++||+.+....+..+.+|...|.+++| ++++. +|++++.||.|++||+++++ .+..+.. .+.++
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 9999999855488899999999999965 56655 66799999999999999886 5565532 45566
Q ss_pred E----EecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcC---CCCEEEEEeCC-eEEEEECCCCCCcce
Q 003840 644 R----FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP---SGELLASVSED-SVRVWTVGSGSEGEC 715 (792)
Q Consensus 644 ~----~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp---dg~~Las~s~d-~I~IwDl~s~~~~~~ 715 (792)
. |++++..+++++.|+.|++||+++++.+.. ..|...|.+++|+| ++.+|++++.| .|++||++++.....
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 6 678999999999999999999999987554 55889999999999 99999999988 999999987644333
Q ss_pred EE--EeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCc--------------------EEEEcccCCCeEEEEE
Q 003840 716 VH--ELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENK--------------------TMTLTAHEGLIAALAV 772 (792)
Q Consensus 716 i~--~~~~~~~~i~si~fspdg~-~L~sgs~dg~I~IwDl~~~~--------------------~~~~~~h~~~V~sl~f 772 (792)
+. .+..|...|.+++|+|++. +|++++.||.|++||+..+. ...+..|...|++++|
T Consensus 250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (357)
T 3i2n_A 250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW 329 (357)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence 32 4458899999999999998 89999999999999997532 2367789999999999
Q ss_pred eCCCCEEE-EEeCCCcEEEeC
Q 003840 773 STETGYVA-SASHDKFVKLWK 792 (792)
Q Consensus 773 spdg~~La-Sgs~DG~I~IWd 792 (792)
+|++++|+ +++.||.|+|||
T Consensus 330 s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 330 SPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp CSSSTTEEEEEETTSEEEEEE
T ss_pred cCCCCeEEEEecCCCcEEEEE
Confidence 99999998 899999999996
No 37
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.9e-35 Score=319.93 Aligned_cols=270 Identities=23% Similarity=0.427 Sum_probs=238.0
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...+.|++|+.++++++.+ +|||+.+++ .+.
T Consensus 58 v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~----------------------------------------------~~~ 91 (340)
T 1got_B 58 IYAMHWGTDSRLLLSASQDGKLIIWDSYTTN----------------------------------------------KVH 91 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTCC----------------------------------------------EEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCC----------------------------------------------cce
Confidence 4468899999998886554 788876543 234
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~----~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd 582 (792)
.+..|...|.+++|+|++++|++|+.|+.|++||+.+. .....+.+|...|.++.|++++ .|++++.|+.|++||
T Consensus 92 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd 170 (340)
T 1got_B 92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWD 170 (340)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEE
Confidence 56678889999999999999999999999999999875 3556788999999999999876 599999999999999
Q ss_pred CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCC
Q 003840 583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN 659 (792)
Q Consensus 583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg 659 (792)
+.+ +..+..+.+|...|.+++|+|++. +|++|+.|+.|++||++++.++..+.+ .+.+++|+|++..+++++.|+
T Consensus 171 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~ 248 (340)
T 1got_B 171 IET-GQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp TTT-TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCC-CcEEEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC
Confidence 987 678889999999999999999875 677999999999999999998887754 578899999999999999999
Q ss_pred eEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003840 660 VVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 736 (792)
Q Consensus 660 ~I~i~D~~t~~~~~~l~~--h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~ 736 (792)
.|++||+++++.+..+.. +...|.+++|+|++++|++++.| .|++||+.++ ..+..+.+|...|.+++|+|++.
T Consensus 249 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~s~dg~ 325 (340)
T 1got_B 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGM 325 (340)
T ss_dssp CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSS
T ss_pred cEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---cEeeEeecCCCcEEEEEEcCCCC
Confidence 999999999988777653 33579999999999999999999 9999999776 67788889999999999999999
Q ss_pred EEEEEEcCCeEEEEE
Q 003840 737 SLLVIGCYQSLELWN 751 (792)
Q Consensus 737 ~L~sgs~dg~I~IwD 751 (792)
+|++++.|+.|+|||
T Consensus 326 ~l~s~s~D~~i~iWd 340 (340)
T 1got_B 326 AVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEcCCccEEecC
Confidence 999999999999997
No 38
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.3e-35 Score=325.55 Aligned_cols=284 Identities=14% Similarity=0.252 Sum_probs=236.5
Q ss_pred ceeeeeeeecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEec--cCCCCEEEEEECC-CCCeEEEEeCCC
Q 003840 501 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSP-SMPRLATSSFDK 576 (792)
Q Consensus 501 ~~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t~~~~~~l~--~h~~~V~~i~fsp-dg~~Lasgs~Dg 576 (792)
.++....+.+|.+.|+|++|+|++ ++||+|+.||.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|+
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 456777889999999999999999 999999999999999999888887776 6999999999999 778999999999
Q ss_pred cEEEEeCCCCCceeEEecc---cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCC
Q 003840 577 TVRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLG 650 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~~~~---h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~ 650 (792)
.|++||+.+ ..+..+.. |...|.+++|+|++. +|++++.|+.|++||++ ++.+..+. ..+.+++|+|++.
T Consensus 142 ~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~ 217 (383)
T 3ei3_B 142 ATTLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCD 217 (383)
T ss_dssp EEEEEETTS--CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCT
T ss_pred EEEEEECCC--CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCC
Confidence 999999985 44555544 448899999999976 56699999999999995 55665554 4678899999998
Q ss_pred -EEEEEEcCCeEEEEECCC----CeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEee---
Q 003840 651 -RYLAAAAENVVSILDAET----QACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELS--- 720 (792)
Q Consensus 651 -~lla~s~dg~I~i~D~~t----~~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~--- 720 (792)
.+++++.|+.|++||+++ +.++..+ +|...|.+++|+| ++.+|++++.| .|++||++++.....+....
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 296 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ 296 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCC
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccc
Confidence 889999999999999998 6677666 5999999999999 99999999998 99999998875443333211
Q ss_pred -cCC----------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcc--cCCCeEEEEEeCCCCEEEEEeCCC
Q 003840 721 -CNG----------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA--HEGLIAALAVSTETGYVASASHDK 786 (792)
Q Consensus 721 -~~~----------~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~--h~~~V~sl~fspdg~~LaSgs~DG 786 (792)
.+. ..+..++|+|++.+ +++.|+.|+|||+.+++.+ .+.+ |...+.+++|+|++++|++|+ ||
T Consensus 297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~ 373 (383)
T 3ei3_B 297 FQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF 373 (383)
T ss_dssp CTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred cccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence 111 23444556666655 6678999999999999887 5554 567888889999999999997 99
Q ss_pred cEEEeC
Q 003840 787 FVKLWK 792 (792)
Q Consensus 787 ~I~IWd 792 (792)
.|+|||
T Consensus 374 ~i~iw~ 379 (383)
T 3ei3_B 374 NILIWN 379 (383)
T ss_dssp EEEEEE
T ss_pred cEEEEe
Confidence 999996
No 39
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-34 Score=312.99 Aligned_cols=246 Identities=19% Similarity=0.313 Sum_probs=220.0
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl 583 (792)
.+..+.+|...|.+++|+++|++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|+|||+
T Consensus 57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~ 136 (319)
T 3frx_A 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136 (319)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEecccCCCeEEEEEcCCC-----CeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEE
Q 003840 584 DNPGYSLRTFMGHSASVMSLDFHPNK-----DDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAA 655 (792)
Q Consensus 584 ~s~~~~i~~~~~h~~~V~sl~fspd~-----~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~ 655 (792)
+ +..+..+.+|...|.+++|.|.. ..++++++.|+.|++||+++.+....+. ..+.+++|+|++.+|+++
T Consensus 137 ~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 137 K--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp T--SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred C--CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence 7 46778889999999999999863 3478899999999999999998887765 457889999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEee--------cCCCceE
Q 003840 656 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELS--------CNGNKFH 727 (792)
Q Consensus 656 s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~--------~~~~~i~ 727 (792)
+.|+.|++||+++++.+..+..+ ..|.+++|+|++.+|++++.+.+++|++... ..+..+. .+...+.
T Consensus 215 ~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~---~~~~~~~~~~~~~~~~~~~~v~ 290 (319)
T 3frx_A 215 GKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQ---YLVDDLRPEFAGYSKAAEPHAV 290 (319)
T ss_dssp ETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTEEEEEEETTE---EEEEEECCCCTTCCGGGCCCEE
T ss_pred eCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcC---eeeeccCccccccccCcCccee
Confidence 99999999999999999888754 6899999999999999999889999999754 3344332 2355689
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003840 728 SCVFHPTYPSLLVIGCYQSLELWNMSEN 755 (792)
Q Consensus 728 si~fspdg~~L~sgs~dg~I~IwDl~~~ 755 (792)
+++|+|+|++|++++.|+.|+|||+.+.
T Consensus 291 ~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 291 SLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEECCCCCEEEEeecCceEEEEEEeec
Confidence 9999999999999999999999998654
No 40
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.9e-35 Score=323.33 Aligned_cols=293 Identities=23% Similarity=0.306 Sum_probs=238.8
Q ss_pred cceEEEEeCCCeeeecCCC--eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 507 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~--~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~ 507 (792)
...+.|+|||.+++++... +|||+.+++.+..+....... .+. .......
T Consensus 67 V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~------------------------~~~----~~~~~~~ 118 (393)
T 1erj_A 67 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAAN------------------------KDP----ENLNTSS 118 (393)
T ss_dssp CCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-------------------------------------------
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccc------------------------ccc----ccccccc
Confidence 4478999999999886543 889999887654332110000 000 0000111
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003840 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 587 (792)
Q Consensus 508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~ 587 (792)
...+...|.+++|+|||++||+|+.|+.|+|||+.+++.+..+.+|...|++++|+|++.+|++++.|++|+|||+++ +
T Consensus 119 ~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~ 197 (393)
T 1erj_A 119 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-G 197 (393)
T ss_dssp --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-T
T ss_pred cCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-C
Confidence 224455699999999999999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----------eCCeeEEEEecCCCEEEEEEc
Q 003840 588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----------KGGTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----------~~~~~~v~~sp~~~~lla~s~ 657 (792)
.....+. +...|.+++|+|.+..+|++|+.|+.|++||++++.++..+ ...+.+++|+|++..+++++.
T Consensus 198 ~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 276 (393)
T 1erj_A 198 QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 276 (393)
T ss_dssp EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence 5555554 66789999999955567889999999999999999877665 235788999999999999999
Q ss_pred CCeEEEEECCCC------------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCC
Q 003840 658 ENVVSILDAETQ------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 724 (792)
Q Consensus 658 dg~I~i~D~~t~------------~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~ 724 (792)
|+.|++||+++. .+...+.+|...|.+++|++++.+|++++.| .|++||+.++ .++..+.+|..
T Consensus 277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~~ 353 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRN 353 (393)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCCC
Confidence 999999999763 4566788899999999999999999999999 9999999876 67788889999
Q ss_pred ceEEEEEeC------CCCEEEEEEcCCeEEEEECCCC
Q 003840 725 KFHSCVFHP------TYPSLLVIGCYQSLELWNMSEN 755 (792)
Q Consensus 725 ~i~si~fsp------dg~~L~sgs~dg~I~IwDl~~~ 755 (792)
.|.+++|++ ++.+|++++.|+.|+||++...
T Consensus 354 ~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 354 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999986 6889999999999999998643
No 41
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=332.25 Aligned_cols=285 Identities=13% Similarity=0.223 Sum_probs=235.8
Q ss_pred eeeeeee-ecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC---Cc---eeEEeccCCCCEEEEEECCCCCeEEEEe
Q 003840 502 FKEANSV-RASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT---LK---SKTNLEEHSSLITDVRFSPSMPRLATSS 573 (792)
Q Consensus 502 ~~~~~~l-~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t---~~---~~~~l~~h~~~V~~i~fspdg~~Lasgs 573 (792)
.+.+..+ .+|.+.|+|++|+| ++++||+|+.||.|+|||+.+ +. ....+ .|...|++++|+|++.+|++|+
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s 130 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSS 130 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEe
Confidence 3567778 89999999999999 999999999999999999876 33 23333 5999999999999999999999
Q ss_pred CCCcEEEEeCC--CCCceeEEecc------------cCCCeEEEE--EcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee
Q 003840 574 FDKTVRVWDAD--NPGYSLRTFMG------------HSASVMSLD--FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 637 (792)
Q Consensus 574 ~Dg~V~IWdl~--s~~~~i~~~~~------------h~~~V~sl~--fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~ 637 (792)
.||.|+|||++ ..+..+..+.. +...+.++. +++++ .+|++++.|+.|++||+++++++..+.
T Consensus 131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 99999999995 11333333322 445566666 44554 577799999999999999999888775
Q ss_pred C-----CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-CCCCCeEEEEEcC----CCCEEEEEeCC-eEEEEE
Q 003840 638 G-----GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDP----SGELLASVSED-SVRVWT 706 (792)
Q Consensus 638 ~-----~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~-~h~~~V~sv~~sp----dg~~Las~s~d-~I~IwD 706 (792)
. .+.+++|+|++..+++++.||.|++||+++++++..+. .|...|.+++|+| ++.+|++++.| .|++||
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 289 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence 4 57889999999999999999999999999999999886 7888999996665 67799999999 899999
Q ss_pred CCCCCCcceEEEeec--------------------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-E
Q 003840 707 VGSGSEGECVHELSC--------------------------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-T 759 (792)
Q Consensus 707 l~s~~~~~~i~~~~~--------------------------~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~ 759 (792)
++++ .++..+.. |...|.+++|+ ++++|++++.|+.|++||+.+++.. .
T Consensus 290 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 290 FVKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp TTTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred cCCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 9876 44444442 44568889999 7789999999999999999987644 2
Q ss_pred Ecc-------------------------------------cCCCeEEEEEeCC--CCEEEEEeCCCcEEEeC
Q 003840 760 LTA-------------------------------------HEGLIAALAVSTE--TGYVASASHDKFVKLWK 792 (792)
Q Consensus 760 ~~~-------------------------------------h~~~V~sl~fspd--g~~LaSgs~DG~I~IWd 792 (792)
+.+ |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 366 VISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 332 8999999999998 77999999999999996
No 42
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.9e-34 Score=315.30 Aligned_cols=272 Identities=22% Similarity=0.390 Sum_probs=238.6
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...+.|+||+.++++++.+ +|||..+++ ...
T Consensus 67 V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~----------------------------------------------~~~ 100 (354)
T 2pbi_B 67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN----------------------------------------------KEH 100 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCC----------------------------------------------EEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCC----------------------------------------------cce
Confidence 4578999999998886655 788865543 223
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC------ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~------~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I 580 (792)
.+..|...|.+++|+|+|.+||+|+.|+.|++|++... .....+..|...|.+++|++++..|++++.|++|+|
T Consensus 101 ~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~l 180 (354)
T 2pbi_B 101 AVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCAL 180 (354)
T ss_dssp EEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred EEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEE
Confidence 45567788999999999999999999999999998643 345677889999999999999999999999999999
Q ss_pred EeCCCCCceeEEecccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEE
Q 003840 581 WDADNPGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA 656 (792)
Q Consensus 581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s 656 (792)
||+++ +..+..+.+|...|.+++|+|+. ..+|++|+.||.|++||+++++++..+.. .+.+++|+|++..+++++
T Consensus 181 wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 259 (354)
T 2pbi_B 181 WDVES-GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS 259 (354)
T ss_dssp EETTT-CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EeCCC-CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe
Confidence 99997 67888999999999999998863 35788999999999999999999887754 578899999999999999
Q ss_pred cCCeEEEEECCCCeEEEEecCC--CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC
Q 003840 657 AENVVSILDAETQACRLSLQGH--TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 733 (792)
Q Consensus 657 ~dg~I~i~D~~t~~~~~~l~~h--~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp 733 (792)
.|+.|++||+++.+.+..+..+ ...+.+++|+|++.+|++++.| .|++||+.++ ..+..+.+|...|.+++|+|
T Consensus 260 ~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~l~~h~~~v~~l~~sp 336 (354)
T 2pbi_B 260 DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG---SRVSILFGHENRVSTLRVSP 336 (354)
T ss_dssp TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEEECT
T ss_pred CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC---ceEEEEECCCCcEEEEEECC
Confidence 9999999999998877766543 3578999999999999999999 9999999776 67788889999999999999
Q ss_pred CCCEEEEEEcCCeEEEEE
Q 003840 734 TYPSLLVIGCYQSLELWN 751 (792)
Q Consensus 734 dg~~L~sgs~dg~I~IwD 751 (792)
++.+|++++.|+.|+||+
T Consensus 337 dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 337 DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEcCCCCEEecC
Confidence 999999999999999996
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.1e-34 Score=305.29 Aligned_cols=273 Identities=25% Similarity=0.433 Sum_probs=239.4
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...+.|+|||.++++++.+ +|||+.+++ ...
T Consensus 26 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~----------------------------------------------~~~ 59 (312)
T 4ery_A 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGK----------------------------------------------FEK 59 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCC----------------------------------------------EEE
T ss_pred EEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----------------------------------------------cch
Confidence 4568999999998885443 778765543 233
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
.+.+|...|.+++|+|++++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++
T Consensus 60 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~- 138 (312)
T 4ery_A 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT- 138 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-
T ss_pred hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEcCCeEE
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVS 662 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~dg~I~ 662 (792)
+..+..+..|...|.+++|+|++. +|++++.||.|++||+++++.+..+. ..+..++|+|++.++++++.|+.|+
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 217 (312)
T 4ery_A 139 GKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217 (312)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred CEEEEEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence 677888999999999999999976 56699999999999999998877653 3467799999999999999999999
Q ss_pred EEECCCCeEEEEecCCCCCeEE---EEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003840 663 ILDAETQACRLSLQGHTKPIDS---VCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 738 (792)
Q Consensus 663 i~D~~t~~~~~~l~~h~~~V~s---v~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L 738 (792)
+||+++++.+..+.+|...+.+ ....+++.+|++++.| .|++||+.++ ..+..+.+|...|.+++|+|++.+|
T Consensus 218 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l 294 (312)
T 4ery_A 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTENII 294 (312)
T ss_dssp EEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECSSSSEE
T ss_pred EEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc---hhhhhhhccCCcEEEEeecCcCCce
Confidence 9999999999999888765433 2334678899999999 9999999876 6788899999999999999999999
Q ss_pred EEEE--cCCeEEEEECC
Q 003840 739 LVIG--CYQSLELWNMS 753 (792)
Q Consensus 739 ~sgs--~dg~I~IwDl~ 753 (792)
++++ .|+.|++|+.+
T Consensus 295 ~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 295 ASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECTTTCCEEEEECC
T ss_pred EEEEccCCccEEEecCC
Confidence 9987 58999999975
No 44
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=315.85 Aligned_cols=285 Identities=19% Similarity=0.340 Sum_probs=232.6
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...+.|+|||.++++++.+ +|||+.+++.. ....
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~-------------------------------------------~~~~ 55 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI-------------------------------------------CKSV 55 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEE-------------------------------------------EEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce-------------------------------------------eeee
Confidence 3468999999999886544 88987654311 0112
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~--~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~ 584 (792)
...+|...|.+++|+|+|++||+|+.|+.|+|||+.++ +.+..+.+|...|++++|+|++++|++|+.|+.|+|||++
T Consensus 56 ~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~ 135 (345)
T 3fm0_A 56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135 (345)
T ss_dssp ECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred eccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence 23689999999999999999999999999999999876 4577889999999999999999999999999999999998
Q ss_pred CCC--ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE--EEee---CCeeEEEEecCCCEEEEEEc
Q 003840 585 NPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT--RVFK---GGTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 585 s~~--~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~--~~~~---~~~~~v~~sp~~~~lla~s~ 657 (792)
+.. ..+..+.+|...|.+++|+|++. +|++++.|+.|++||++.+... ..+. ..+.+++|+|++.+|++++.
T Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 136 EEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp TTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence 643 34667889999999999999976 5669999999999999887533 4443 46788999999999999999
Q ss_pred CCeEEEEECCC---------------CeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc-c-----
Q 003840 658 ENVVSILDAET---------------QACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG-E----- 714 (792)
Q Consensus 658 dg~I~i~D~~t---------------~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~-~----- 714 (792)
|+.|++||... .+++..+.+ |...|.+++|++++.+|++++.| .|++|++...... .
T Consensus 215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 294 (345)
T 3fm0_A 215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL 294 (345)
T ss_dssp TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE
T ss_pred CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE
Confidence 99999999632 134555655 88999999999999999999999 9999998764321 1
Q ss_pred eEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEE
Q 003840 715 CVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 715 ~i~~~~~~~~~i~si~fspdg-~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
.......|...|.+++|+|++ .+|++++.||.|+||++.+++..
T Consensus 295 ~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 122345788999999999998 49999999999999999887754
No 45
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-35 Score=374.70 Aligned_cols=352 Identities=20% Similarity=0.356 Sum_probs=291.8
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeee-ccCCC------CCCCCCCCcceeccCC
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD------TDPRDAGGRGMDVSQG 499 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~-l~~d~------~~~~d~~~~~~d~~~~ 499 (792)
...+.|+|||.++++++.+ +|||+.+++.+..+... ...+.+. +..+. ....|+.+++|++..+
T Consensus 660 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~ 733 (1249)
T 3sfz_A 660 VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH------SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS
T ss_pred EEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC------CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc
Confidence 4568999999999886554 89999998776554421 1223222 33321 2345777889988766
Q ss_pred cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe-----------------------------
Q 003840 500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL----------------------------- 550 (792)
Q Consensus 500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l----------------------------- 550 (792)
+.+..+.+|.+.|++++|+|++++|++|+.||.|++||+.+++....+
T Consensus 734 ---~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1249)
T 3sfz_A 734 ---ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810 (1249)
T ss_dssp ---SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS
T ss_pred ---chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC
Confidence 466778899999999999999999999999999999998766543332
Q ss_pred --------------------------ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEE
Q 003840 551 --------------------------EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 604 (792)
Q Consensus 551 --------------------------~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~ 604 (792)
.+|...|.+++|+|++.++++++.||.|++||+.+ +..+..+.+|...|.+++
T Consensus 811 ~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v~ 889 (1249)
T 3sfz_A 811 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS-RLKVADCRGHLSWVHGVM 889 (1249)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT-TEEEEEECCCSSCEEEEE
T ss_pred CEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceeeecCCCccceEEEE
Confidence 16788899999999999999999999999999997 778888999999999999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCC----------------------------------------eeEEEeeCCeeEEE
Q 003840 605 FHPNKDDLICSCDGDGEIRYWSINNG----------------------------------------SCTRVFKGGTAQMR 644 (792)
Q Consensus 605 fspd~~~ll~sgs~Dg~I~iwdl~~~----------------------------------------~~~~~~~~~~~~v~ 644 (792)
|+|++. +|++++.||.|++||+... .........+.+++
T Consensus 890 ~spdg~-~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 968 (1249)
T 3sfz_A 890 FSPDGS-SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC 968 (1249)
T ss_dssp ECTTSS-EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred ECCCCC-EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEE
Confidence 999976 4569999999999997531 11111234577899
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC-----------
Q 003840 645 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE----------- 712 (792)
Q Consensus 645 ~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~----------- 712 (792)
|+|++..+++++.+|.|++||+.+++.+..+.+|...|++++|+|++++|++++.| .|++||+.++..
T Consensus 969 ~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~ 1048 (1249)
T 3sfz_A 969 LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVK 1048 (1249)
T ss_dssp ECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEE
T ss_pred EcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999988 999999876411
Q ss_pred --------------------------cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCC
Q 003840 713 --------------------------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG 765 (792)
Q Consensus 713 --------------------------~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~ 765 (792)
...+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+ .+.+|.+
T Consensus 1049 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~ 1128 (1249)
T 3sfz_A 1049 DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG 1128 (1249)
T ss_dssp EEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSS
T ss_pred EEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCC
Confidence 1223345567788999999999999999999999999999988866 6778999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 766 LIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 766 ~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.|++++|+|++++|++++.||.|+|||
T Consensus 1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1129 CVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp CEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 999999999999999999999999996
No 46
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-35 Score=358.60 Aligned_cols=348 Identities=13% Similarity=0.139 Sum_probs=257.4
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeee-ccCCC---CCCCCCCCcceeccCCcce
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD---TDPRDAGGRGMDVSQGFSF 502 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~-l~~d~---~~~~d~~~~~~d~~~~~~~ 502 (792)
...+.|+|||.++++++.+ +|||..+++...... . ...|... +..+. ....|..+++|++..+.
T Consensus 20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~---~----~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~-- 90 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE---D----RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQK-- 90 (902)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS---S----CCCEEEEEEETTTEEEEEETTCEEEEEETTTCS--
T ss_pred cEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC---C----CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCc--
Confidence 4578999999999886544 899988765433221 1 1223332 23321 12357788999988764
Q ss_pred eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-----------EEeccCCCCEEEEEECCC-CCeEE
Q 003840 503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-----------TNLEEHSSLITDVRFSPS-MPRLA 570 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~-----------~~l~~h~~~V~~i~fspd-g~~La 570 (792)
.+..+. |.+.|++++|+|++++|++|+.||.|++||+++++.. ..+.+|...|++|+|+|+ +..|+
T Consensus 91 -~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 91 -VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp -EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred -EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 344444 7789999999999999999999999999999988754 234679999999999996 46899
Q ss_pred EEeCCCcEEEEeCCCCCceeEEeccc------------------CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 003840 571 TSSFDKTVRVWDADNPGYSLRTFMGH------------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 632 (792)
Q Consensus 571 sgs~Dg~V~IWdl~s~~~~i~~~~~h------------------~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~ 632 (792)
+|+.||.| |||+++ +..+..+..| ...|++++|+|++. +|++++.||.|++||++++++
T Consensus 169 ~g~~dg~v-lWd~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVE-NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EECSSCEE-EEETTT-TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTCCE
T ss_pred EEeCCCcE-EEECCC-CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcE
Confidence 99999999 999997 6667777655 57799999999976 667999999999999998877
Q ss_pred EEE--e-------------------eCCeeEEEEec----CCCEE-----------------------------------
Q 003840 633 TRV--F-------------------KGGTAQMRFQP----HLGRY----------------------------------- 652 (792)
Q Consensus 633 ~~~--~-------------------~~~~~~v~~sp----~~~~l----------------------------------- 652 (792)
+.. + ...+..++|++ ++..+
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 325 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK 325 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence 542 1 11345566643 22222
Q ss_pred ------------------------------------------EEEEcCCeEEEEECCCCeEEEE----------------
Q 003840 653 ------------------------------------------LAAAAENVVSILDAETQACRLS---------------- 674 (792)
Q Consensus 653 ------------------------------------------la~s~dg~I~i~D~~t~~~~~~---------------- 674 (792)
++++.|+.|++||+.++.....
T Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~ 405 (902)
T 2oaj_A 326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT 405 (902)
T ss_dssp HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence 2333345555666544422211
Q ss_pred -------------------------ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc-eEEE--ee-----
Q 003840 675 -------------------------LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE-CVHE--LS----- 720 (792)
Q Consensus 675 -------------------------l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~-~i~~--~~----- 720 (792)
+.+|...+.+++|+|++++|++++.| +|++||+.++.... .+.. +.
T Consensus 406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~ 485 (902)
T 2oaj_A 406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNK 485 (902)
T ss_dssp EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC
T ss_pred EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCC
Confidence 12233334445567899999999999 99999998763211 1111 11
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--------------------------------------------
Q 003840 721 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-------------------------------------------- 756 (792)
Q Consensus 721 ~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~-------------------------------------------- 756 (792)
+|...|.+++|+|++++||+|+.||+|+|||+.+++
T Consensus 486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence 678899999999999999999999999999997662
Q ss_pred --EEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 757 --TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 757 --~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
...+.+|.+.|++|+|+||| +||+|+.||+|+|||
T Consensus 566 ~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd 602 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLID 602 (902)
T ss_dssp EEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEE
T ss_pred ceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEE
Confidence 23667899999999999999 999999999999997
No 47
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.5e-34 Score=321.28 Aligned_cols=280 Identities=21% Similarity=0.345 Sum_probs=248.4
Q ss_pred eeeeeeecCCCCe-EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 503 KEANSVRASTSKV-ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 503 ~~~~~l~~H~~~V-~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
.....+.+|.+.| .|+.| ++++|++|+.||.|++||+.+++.+..+.+|...|++++|++++ +|++|+.||+|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 4566889999885 56666 56799999999999999999999999999999999999999988 99999999999999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCC-CCeEEEEEeCCCcEEEEEcCCCeeE-----------------------EEee
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCT-----------------------RVFK 637 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd-~~~ll~sgs~Dg~I~iwdl~~~~~~-----------------------~~~~ 637 (792)
|+++ +..+..+.+|...|.+++|++. +..++++++.||.|++||++++... ..+.
T Consensus 189 d~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 189 DIKK-GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp ETTT-TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred ECCC-CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 9997 6788899999999999999852 3467889999999999999887532 2233
Q ss_pred CC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 003840 638 GG-TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 715 (792)
Q Consensus 638 ~~-~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~ 715 (792)
++ ....++++++..+++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.| .|++||++++ .+
T Consensus 268 ~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~ 344 (464)
T 3v7d_B 268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---EL 344 (464)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---EE
T ss_pred CccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cE
Confidence 22 2334568889999999999999999999999999999999999999999999999999999 9999999876 78
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 716 i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+..+..|...+.+++|+ +.+|++++.||.|++||+.++.......|...+..++|++++.+|++++ ||.|+|||
T Consensus 345 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 345 MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 88899999999999997 5799999999999999999988776667888899999999999999998 99999996
No 48
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-34 Score=366.33 Aligned_cols=315 Identities=22% Similarity=0.406 Sum_probs=271.8
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...+.|++||.++++++.+ +|||+.+++ .+.
T Consensus 618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~----------------------------------------------~~~ 651 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASCGADKTLQVFKAETGE----------------------------------------------KLL 651 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCC----------------------------------------------EEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCC----------------------------------------------EEE
Confidence 4568999999998885443 788876653 334
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECC--CCCeEEEEeCCCcEEEEeCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWdl~ 584 (792)
.+.+|.+.|.|++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...|++++|++ ++.+|++|+.||.|++||+.
T Consensus 652 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~ 731 (1249)
T 3sfz_A 652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT
T ss_pred EeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC
Confidence 5678999999999999999999999999999999999999999999999999999999 55589999999999999999
Q ss_pred CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----------------------------
Q 003840 585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---------------------------- 636 (792)
Q Consensus 585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---------------------------- 636 (792)
+ +..+..+.+|...|++++|+|++. ++++++.||.|++||+.++.....+
T Consensus 732 ~-~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 809 (1249)
T 3sfz_A 732 Q-KECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD 809 (1249)
T ss_dssp S-SSEEEEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT
T ss_pred C-cchhheecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCC
Confidence 7 678888999999999999999976 5669999999999999877554332
Q ss_pred ------------------------------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEE
Q 003840 637 ------------------------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVC 686 (792)
Q Consensus 637 ------------------------------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~ 686 (792)
...+.+++|+|++..+++++.++.|++||+.++..+..+.+|...|.+++
T Consensus 810 g~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~ 889 (1249)
T 3sfz_A 810 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 889 (1249)
T ss_dssp SSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEE
Confidence 12356688999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCC-eEEEEECCCCCCc--------------------------ceEEE--------eecCCCceEEEEE
Q 003840 687 WDPSGELLASVSED-SVRVWTVGSGSEG--------------------------ECVHE--------LSCNGNKFHSCVF 731 (792)
Q Consensus 687 ~spdg~~Las~s~d-~I~IwDl~s~~~~--------------------------~~i~~--------~~~~~~~i~si~f 731 (792)
|+|++++|++++.| .|++||+.+.... ..+.. .......+.+++|
T Consensus 890 ~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 969 (1249)
T 3sfz_A 890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL 969 (1249)
T ss_dssp ECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEE
Confidence 99999999999999 9999997532100 00000 1123456899999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 732 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 732 spdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+|+++++++++.+|.|++||+.+++.+ .+.+|...|++++|+|++++|++++.||.|++||
T Consensus 970 sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 970 SPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp CTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred cCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 999999999999999999999998877 6678999999999999999999999999999996
No 49
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-36 Score=330.11 Aligned_cols=283 Identities=18% Similarity=0.239 Sum_probs=228.9
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~--~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~ 584 (792)
.+..|.+.|+|++|+|+|++||+|+.|+.|+|||+.++ +.+..+.+|...|++++|+|++++|++++.|+.|+|||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34567789999999999999999999999999999988 7888899999999999999999999999999999999998
Q ss_pred CCC--ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---eEEEe----eCCeeEEEEecCCCEEEEE
Q 003840 585 NPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVF----KGGTAQMRFQPHLGRYLAA 655 (792)
Q Consensus 585 s~~--~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~---~~~~~----~~~~~~v~~sp~~~~lla~ 655 (792)
+.. .....+..|...|.+++|+|++. +|++++.|+.|++||+++++ +...+ ...+.+++|+|++..++++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 743 25677788999999999999876 55589999999999999876 24444 3457889999999999999
Q ss_pred EcCCeEEEEECC------------------CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc-ce
Q 003840 656 AAENVVSILDAE------------------TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG-EC 715 (792)
Q Consensus 656 s~dg~I~i~D~~------------------t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~-~~ 715 (792)
+.|+.|++||++ .++++..+ +|...|.+++|+|++++|++++.| .|++||+.++... ..
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 999999999985 35566677 899999999999999999999999 9999999887431 12
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc---------------------------------------
Q 003840 716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--------------------------------------- 756 (792)
Q Consensus 716 i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~--------------------------------------- 756 (792)
+..+..|...|.+++|+|++++|++++.++.+ +|+.....
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS 322 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence 66778899999999999999988887665555 77664211
Q ss_pred EE-E-------------EcccCCCeEEEEEeCCC-C---EEEEEeCCCcEEEeC
Q 003840 757 TM-T-------------LTAHEGLIAALAVSTET-G---YVASASHDKFVKLWK 792 (792)
Q Consensus 757 ~~-~-------------~~~h~~~V~sl~fspdg-~---~LaSgs~DG~I~IWd 792 (792)
.+ . ...|.+.|+++++.++. . .|+|||.||.|+|||
T Consensus 323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 00 0 01299999999976543 3 699999999999997
No 50
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=329.57 Aligned_cols=277 Identities=20% Similarity=0.315 Sum_probs=242.5
Q ss_pred CCeEEEEEcCCCC-EEEEE----------eCCCeEEEEECCCCce---eEEeccCCCCEEEEEECCCCCeEEEEeCCCcE
Q 003840 513 SKVICCHFSSDGK-LLATG----------GHDKKAVLWHTDTLKS---KTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 578 (792)
Q Consensus 513 ~~V~~lafspdg~-~Lasg----------s~Dg~I~vWdl~t~~~---~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V 578 (792)
..|.|++|+|+|+ +||+| +.|+.|+|||+.++.. +..+ .|...|++++|+|++.+|++++.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 3588999999997 99999 8899999999998763 3333 588999999999999999999999999
Q ss_pred EEEeCCC---CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe------eEEE------eeCCeeEE
Q 003840 579 RVWDADN---PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------CTRV------FKGGTAQM 643 (792)
Q Consensus 579 ~IWdl~s---~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~------~~~~------~~~~~~~v 643 (792)
+|||+.+ ....+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++ .... ....+.++
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 9999986 3357888899999999999999966678899999999999999876 2222 34567889
Q ss_pred EEecC-CCEEEEEEcCCeEEEEECCCCeEEEEecCC------CCCeEEEEEcCCC-CEEEEEeCC----eEEEEECCCCC
Q 003840 644 RFQPH-LGRYLAAAAENVVSILDAETQACRLSLQGH------TKPIDSVCWDPSG-ELLASVSED----SVRVWTVGSGS 711 (792)
Q Consensus 644 ~~sp~-~~~lla~s~dg~I~i~D~~t~~~~~~l~~h------~~~V~sv~~spdg-~~Las~s~d----~I~IwDl~s~~ 711 (792)
+|+++ +..+++++.|+.|++||+++++.+..+..+ ...|.+++|+|++ .+|++++.| .|++||++++.
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 99999 678888889999999999999999988876 7889999999997 688888877 89999998753
Q ss_pred CcceEEEee-cCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCC-CEEEEEeCCCc
Q 003840 712 EGECVHELS-CNGNKFHSCVFHP-TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKF 787 (792)
Q Consensus 712 ~~~~i~~~~-~~~~~i~si~fsp-dg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg-~~LaSgs~DG~ 787 (792)
..+..+. .|...|.+++|+| ++.+|++++.|+.|++||+.+++.+ .+..|...|++++|+|++ .+|++++.||.
T Consensus 252 --~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 252 --TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp --SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred --CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 3445566 7889999999999 9999999999999999999998877 677999999999999999 89999999999
Q ss_pred EEEeC
Q 003840 788 VKLWK 792 (792)
Q Consensus 788 I~IWd 792 (792)
|+|||
T Consensus 330 i~iw~ 334 (416)
T 2pm9_A 330 IEVQT 334 (416)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 51
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=314.61 Aligned_cols=289 Identities=17% Similarity=0.261 Sum_probs=245.0
Q ss_pred cceeeeeeeecCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCC-Ccee-EEeccCCCCEEEEEECCCCCeEEEEeC
Q 003840 500 FSFKEANSVRASTSKVICCHFSSD---GKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSF 574 (792)
Q Consensus 500 ~~~~~~~~l~~H~~~V~~lafspd---g~~Lasgs~Dg~I~vWdl~t-~~~~-~~l~~h~~~V~~i~fspdg~~Lasgs~ 574 (792)
.+++.+..+.+|.+.|+|++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 455677788999999999999999 69999999999999999997 5554 778899999999999999999999999
Q ss_pred CCcEEEEeCCCCCceeEEecccCCCeEEEEE--cCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEE
Q 003840 575 DKTVRVWDADNPGYSLRTFMGHSASVMSLDF--HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRY 652 (792)
Q Consensus 575 Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~f--spd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~l 652 (792)
||.|+|||+++ +..+ .+..|...|.+++| ++++ .+|++++.||.|++||+++++.+..+..+...+++......+
T Consensus 107 dg~v~iwd~~~-~~~~-~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 3mmy_A 107 DKTAKMWDLSS-NQAI-QIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMA 183 (368)
T ss_dssp TSEEEEEETTT-TEEE-EEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEE
T ss_pred CCcEEEEEcCC-CCce-eeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCee
Confidence 99999999987 4433 46679999999999 7775 467799999999999999999988888777777777777899
Q ss_pred EEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCE----EEEEeCC-eEEEEECCCCCCcceEEEeecCCC-
Q 003840 653 LAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGEL----LASVSED-SVRVWTVGSGSEGECVHELSCNGN- 724 (792)
Q Consensus 653 la~s~dg~I~i~D~~t~~~~~~l~--~h~~~V~sv~~spdg~~----Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~- 724 (792)
++++.++.+.+||++......... .+...+.++++.++... +++++.| .|++||++.......+..+..|..
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence 999999999999998875443332 24456777777666554 8888888 999999987644355566666655
Q ss_pred -----------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 725 -----------KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 725 -----------~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
.|.+++|+|++++|++++.||.|+|||+.+++++ .+..|...|++++|+|++++|++++.|+..+.|
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 6999999999999999999999999999999887 677899999999999999999999998865544
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.2e-33 Score=315.48 Aligned_cols=271 Identities=20% Similarity=0.397 Sum_probs=240.5
Q ss_pred eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003840 505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~ 584 (792)
+..+.+|.+.|++++|+ +++|++|+.||.|++||+.+++.+..+.+|...|.++.|+ +++|++|+.||.|++||+.
T Consensus 152 ~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~ 227 (445)
T 2ovr_B 152 LRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE 227 (445)
T ss_dssp EEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESS
T ss_pred EEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECC
Confidence 34567899999999998 5699999999999999999999999999999999999995 5689999999999999999
Q ss_pred CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeE
Q 003840 585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVV 661 (792)
Q Consensus 585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I 661 (792)
+ +..+..+.+|...|.+++| ++ .++++++.||.|++||+++++++..+.. .+.++.| ++..+++++.|+.|
T Consensus 228 ~-~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i 301 (445)
T 2ovr_B 228 T-GQCLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSI 301 (445)
T ss_dssp S-CCEEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCE
T ss_pred C-CcEEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeE
Confidence 7 6778888999999999999 34 3567999999999999999999888764 3555666 78899999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec---CCCceEEEEEeCCCCE
Q 003840 662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC---NGNKFHSCVFHPTYPS 737 (792)
Q Consensus 662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~---~~~~i~si~fspdg~~ 737 (792)
++||+++++.+..+.+|...+.++.++ +++|++++.| .|++||++++ .++..+.. |...|.+++|+ +++
T Consensus 302 ~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~--~~~ 374 (445)
T 2ovr_B 302 RVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG---QCLQTLQGPNKHQSAVTCLQFN--KNF 374 (445)
T ss_dssp EEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECSTTSCSSCEEEEEEC--SSE
T ss_pred EEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC---cEEEEEccCCCCCCCEEEEEEC--CCE
Confidence 999999999999999999999988874 6799999988 9999999876 56666665 77889999995 579
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EE-----cccCCCeEEEEEeCCCCEEEEEeCCCc----EEEeC
Q 003840 738 LLVIGCYQSLELWNMSENKTM-TL-----TAHEGLIAALAVSTETGYVASASHDKF----VKLWK 792 (792)
Q Consensus 738 L~sgs~dg~I~IwDl~~~~~~-~~-----~~h~~~V~sl~fspdg~~LaSgs~DG~----I~IWd 792 (792)
|++++.||.|++||+.+++.+ .+ ..|.+.|++++|+|++.+|++|+.||. |.|||
T Consensus 375 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 375 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEE
Confidence 999999999999999999877 33 378899999999999999999999998 99996
No 53
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-34 Score=354.12 Aligned_cols=352 Identities=12% Similarity=0.055 Sum_probs=262.6
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeee-ccCCC----CCCCCCCCcceeccCCcc
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQGFS 501 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~-l~~d~----~~~~d~~~~~~d~~~~~~ 501 (792)
...+.|++ |.++++++.+ +|||+.+++.+..+. ....+.++ +.++. .+..|+.+++|++..+..
T Consensus 61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL 132 (902)
T ss_dssp EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 45688999 7777775444 899999987655442 11234443 33332 234677889999876542
Q ss_pred eee-e-------eeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeEEeccC------------------C
Q 003840 502 FKE-A-------NSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEH------------------S 554 (792)
Q Consensus 502 ~~~-~-------~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h------------------~ 554 (792)
... + ..+++|.+.|++++|+|+ +.+|++|+.||.| |||+.+++.+..+..| .
T Consensus 133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~ 211 (902)
T 2oaj_A 133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRT 211 (902)
T ss_dssp EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccC
Confidence 110 1 345789999999999996 5799999999999 9999999988888765 5
Q ss_pred CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE--ec---c-------------cCCCeEEEEEcC----CCCeE
Q 003840 555 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT--FM---G-------------HSASVMSLDFHP----NKDDL 612 (792)
Q Consensus 555 ~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~--~~---~-------------h~~~V~sl~fsp----d~~~l 612 (792)
..|++++|+|++.+|++|+.||.|+|||+++ +.++.. +. . |...|++++|++ ++..+
T Consensus 212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~-g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~l 290 (902)
T 2oaj_A 212 PKVIQSLYHPNSLHIITIHEDNSLVFWDANS-GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSL 290 (902)
T ss_dssp CCEEEEEECTTSSEEEEEETTCCEEEEETTT-CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEE
T ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEE
Confidence 7799999999999999999999999999987 444432 21 1 345789999953 33355
Q ss_pred EEEEeCC-----CcEEEEE-------------------------------------------------------------
Q 003840 613 ICSCDGD-----GEIRYWS------------------------------------------------------------- 626 (792)
Q Consensus 613 l~sgs~D-----g~I~iwd------------------------------------------------------------- 626 (792)
+++|+.| ..|++|+
T Consensus 291 l~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~ 370 (902)
T 2oaj_A 291 LISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLI 370 (902)
T ss_dssp EEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEE
T ss_pred EEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEE
Confidence 6666443 1444444
Q ss_pred ----------cCCCeeEEE-----------------------------------------eeC---CeeEEEEecCCCEE
Q 003840 627 ----------INNGSCTRV-----------------------------------------FKG---GTAQMRFQPHLGRY 652 (792)
Q Consensus 627 ----------l~~~~~~~~-----------------------------------------~~~---~~~~v~~sp~~~~l 652 (792)
+.++..... +.+ .+..++|+|++..+
T Consensus 371 s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~l 450 (902)
T 2oaj_A 371 LGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAF 450 (902)
T ss_dssp ETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEE
T ss_pred cCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEE
Confidence 433311100 000 01123456788899
Q ss_pred EEEEcCCeEEEEECCCCeEE----EE--ec-----CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC--------
Q 003840 653 LAAAAENVVSILDAETQACR----LS--LQ-----GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-------- 712 (792)
Q Consensus 653 la~s~dg~I~i~D~~t~~~~----~~--l~-----~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~-------- 712 (792)
++++.|+.|++||+.++... .. +. +|...|++|+|+|++++||+++.| +|+|||+.++..
T Consensus 451 aSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~ 530 (902)
T 2oaj_A 451 ITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPE 530 (902)
T ss_dssp EEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------
T ss_pred EEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCC
Confidence 99999999999999876421 11 22 788999999999999999999999 999999976521
Q ss_pred ----------------------------------cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 713 ----------------------------------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 713 ----------------------------------~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
..++..+..|...|++++|+||| +|++|+.|++|+|||+++...+
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~ 609 (902)
T 2oaj_A 531 SGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAII 609 (902)
T ss_dssp -------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEE
T ss_pred CcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEE
Confidence 13467788899999999999999 9999999999999999888765
Q ss_pred E------E-cccCCCeEEEEEe-----CCC---CEEEEEeCCCcEEEeC
Q 003840 759 T------L-TAHEGLIAALAVS-----TET---GYVASASHDKFVKLWK 792 (792)
Q Consensus 759 ~------~-~~h~~~V~sl~fs-----pdg---~~LaSgs~DG~I~IWd 792 (792)
. + .+|.+.|++|+|+ ||| .+|++|+.||+|++||
T Consensus 610 ~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 610 YMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp EEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred EEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence 2 2 2789999999999 885 8999999999999996
No 54
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7e-34 Score=344.53 Aligned_cols=313 Identities=19% Similarity=0.335 Sum_probs=270.2
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...+.|+|||.++++++.+ .|||+.+++ .+.
T Consensus 16 v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~----------------------------------------------~~~ 49 (814)
T 3mkq_A 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQV----------------------------------------------EVR 49 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTE----------------------------------------------EEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECCCCc----------------------------------------------eEE
Confidence 4578999999998886443 678876543 334
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
.+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||+.+.
T Consensus 50 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 129 (814)
T 3mkq_A 50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129 (814)
T ss_dssp EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEec--CCCEEEEEEcCCe
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQP--HLGRYLAAAAENV 660 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp--~~~~lla~s~dg~ 660 (792)
......+.+|...|.+++|+|++..+|++++.||.|++||+.++.....+. ..+..++|+| ++..+++++.|+.
T Consensus 130 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 209 (814)
T 3mkq_A 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209 (814)
T ss_dssp SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE
T ss_pred ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE
Confidence 577888889999999999999545678899999999999998887666554 4578899999 8899999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE-E
Q 003840 661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS-L 738 (792)
Q Consensus 661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~-L 738 (792)
|++||+++++.+..+.+|...|.+++|+|++.+|++++.| .|++||+.++ ..+..+..+...+.+++|+|++.. +
T Consensus 210 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~ 286 (814)
T 3mkq_A 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNY 286 (814)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---SEEEEECCSSSSEEEEEECTTCGGGE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEeecCCCcEEEEEEccCCCceE
Confidence 9999999999999999999999999999999999999988 9999999876 678888888899999999999874 3
Q ss_pred EEEEcCCeEEEEECCCCc----------EEE----------------------------------EcccCCCeEEEEEeC
Q 003840 739 LVIGCYQSLELWNMSENK----------TMT----------------------------------LTAHEGLIAALAVST 774 (792)
Q Consensus 739 ~sgs~dg~I~IwDl~~~~----------~~~----------------------------------~~~h~~~V~sl~fsp 774 (792)
++++.++.+.+|++.... .+. +..+...+.+++|+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 366 (814)
T 3mkq_A 287 IASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP 366 (814)
T ss_dssp EEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT
T ss_pred EEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC
Confidence 556667788889876432 111 123445678999999
Q ss_pred CCCEEEEEeCCCcEEEeC
Q 003840 775 ETGYVASASHDKFVKLWK 792 (792)
Q Consensus 775 dg~~LaSgs~DG~I~IWd 792 (792)
+|++|++++ ||.+.||+
T Consensus 367 dg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 367 NGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp TSSEEEEEE-TTEEEEEE
T ss_pred CCCEEEEec-CCEEEEEE
Confidence 999999888 88999985
No 55
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.6e-34 Score=309.09 Aligned_cols=247 Identities=15% Similarity=0.231 Sum_probs=208.5
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl 583 (792)
....+.+|...|.+++|+|++.+|++|+.|++|+|||+.+++.+..+.+|...|++++|+|++++|++++.|+.|+|||+
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEec---ccCCCeEEEEEcCCCC---------eEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecC
Q 003840 584 DNPGYSLRTFM---GHSASVMSLDFHPNKD---------DLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPH 648 (792)
Q Consensus 584 ~s~~~~i~~~~---~h~~~V~sl~fspd~~---------~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~ 648 (792)
.. .....+. .|...|.+++|+|++. .+|++++.|+.|++||. .......+. ..+.+++|+|+
T Consensus 148 ~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~ 224 (343)
T 2xzm_R 148 LG--ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPN 224 (343)
T ss_dssp SS--CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTT
T ss_pred cC--CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCC
Confidence 74 3333333 6889999999999863 47889999999999995 455555544 46788999999
Q ss_pred CCEEEEEEcCCeEEEEECCC-CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEee-------
Q 003840 649 LGRYLAAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELS------- 720 (792)
Q Consensus 649 ~~~lla~s~dg~I~i~D~~t-~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~------- 720 (792)
+.+|++++.|+.|++||++. ......+. +...|.+++|+|++.+|++++++.|++||+.+..... +..+.
T Consensus 225 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~ 302 (343)
T 2xzm_R 225 GKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAP-VCTIEAEPITKA 302 (343)
T ss_dssp SSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCS-EEECCCCSGGGB
T ss_pred CCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCc-eEEeecCcchhh
Confidence 99999999999999999954 33333333 4567999999999999988776699999998764322 22222
Q ss_pred ----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003840 721 ----CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 755 (792)
Q Consensus 721 ----~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~ 755 (792)
+|...+.+++|+|++++|++|+.||.|++|++.++
T Consensus 303 ~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 303 EGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp TTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 56778999999999999999999999999998654
No 56
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-34 Score=321.77 Aligned_cols=277 Identities=19% Similarity=0.373 Sum_probs=235.8
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...+.|+|||.++++++.+ +|||+.+++ ...
T Consensus 69 V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~----------------------------------------------~~~ 102 (380)
T 3iz6_a 69 VYSLDWTPEKNWIVSASQDGRLIVWNALTSQ----------------------------------------------KTH 102 (380)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEETTTTE----------------------------------------------EEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------------------------------------------cce
Confidence 4578899999998886555 788876543 234
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------ceeEEeccCCCCEEEEEECCCC-CeEEEEeCCCcE
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTV 578 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~-------~~~~~l~~h~~~V~~i~fspdg-~~Lasgs~Dg~V 578 (792)
.+.+|...|.+++|+|+|++||+|+.|+.|+|||+.+. .....+.+|.+.|.++.|.|++ ..|++|+.|++|
T Consensus 103 ~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i 182 (380)
T 3iz6_a 103 AIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTC 182 (380)
T ss_dssp EEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCE
T ss_pred EEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcE
Confidence 56789999999999999999999999999999998753 2345678999999999999974 579999999999
Q ss_pred EEEeCCCCCceeEEe-----cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEEee---CCeeEEEEecCC
Q 003840 579 RVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFK---GGTAQMRFQPHL 649 (792)
Q Consensus 579 ~IWdl~s~~~~i~~~-----~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~~~---~~~~~v~~sp~~ 649 (792)
++||+.+ +..+..+ .+|...|.+++|++.+..+|++|+.|+.|++||++. ...+..+. ..+.+++|+|++
T Consensus 183 ~~wd~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 183 VLWDVTT-GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp EEECTTT-CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred EEEEcCC-CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC
Confidence 9999998 5566665 578999999999886667888999999999999984 45565554 467899999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEecCCC-------CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe--
Q 003840 650 GRYLAAAAENVVSILDAETQACRLSLQGHT-------KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL-- 719 (792)
Q Consensus 650 ~~lla~s~dg~I~i~D~~t~~~~~~l~~h~-------~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~-- 719 (792)
.++++++.|+.|++||+++++.+..+..+. ..|++++|+|+|++|++++.| .|++||+..+ +.+..+
T Consensus 262 ~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---~~~~~~~~ 338 (380)
T 3iz6_a 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA---EMVLNLGT 338 (380)
T ss_dssp SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC---CEEEEECC
T ss_pred CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC---ceEEEEec
Confidence 999999999999999999999888876543 248999999999999999999 9999999776 444444
Q ss_pred --ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003840 720 --SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 720 --~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~ 756 (792)
..|...|.+++|+|++.+|++|+.|+.|+||++...+
T Consensus 339 ~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 339 LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 5788999999999999999999999999999998654
No 57
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.8e-34 Score=307.38 Aligned_cols=276 Identities=16% Similarity=0.250 Sum_probs=241.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc--
Q 003840 511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-- 588 (792)
Q Consensus 511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~-- 588 (792)
|.+.|.+++|+|||++++++..++.+.+|+...........+|...|++++|+|++++|++++ ||.|+|||+.+...
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 456799999999999999998888887777666555555568999999999999999999999 99999999987432
Q ss_pred eeEEec--ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eEEEee---CCeeEEEEecCCCEEEEEEcCCeE
Q 003840 589 SLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFK---GGTAQMRFQPHLGRYLAAAAENVV 661 (792)
Q Consensus 589 ~i~~~~--~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I 661 (792)
.+..+. .|...|.+++|+|++. +|++++.|+.|++||+++++ ....+. ..+.+++|++++..+++++.|+.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 333333 7899999999999976 56688999999999999887 344443 357789999999999999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003840 662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 740 (792)
Q Consensus 662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s 740 (792)
++||+++++.+..+..|...|.+++|+|++++|++++.| .|++||++++ ..+..+ .+...+.+++|+|++++|++
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~-~~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQH-DFTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeee-cCCCceEEEEECCCCCEEEE
Confidence 999999999999999999999999999999999999998 9999999876 444444 36778999999999999999
Q ss_pred EEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 741 IGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 741 gs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
++.++.|++||+.+++...+..|...|.+++|+|++++|++++.||.|++||
T Consensus 242 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 9999999999999999989999999999999999999999999999999996
No 58
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-35 Score=338.26 Aligned_cols=305 Identities=10% Similarity=0.070 Sum_probs=232.5
Q ss_pred CCCCCCCcceeccCCc-ceeeeeeeecCCCCeEEEEEcCC------CCEEEEEeCCCeEEEEECCCCce-----------
Q 003840 485 DPRDAGGRGMDVSQGF-SFKEANSVRASTSKVICCHFSSD------GKLLATGGHDKKAVLWHTDTLKS----------- 546 (792)
Q Consensus 485 ~~~d~~~~~~d~~~~~-~~~~~~~l~~H~~~V~~lafspd------g~~Lasgs~Dg~I~vWdl~t~~~----------- 546 (792)
...|..+++|++..+. .+.....+.+|.+.|.+|+|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p 258 (524)
T 2j04_B 179 EKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP 258 (524)
T ss_dssp ---CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred CCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence 3456677888876543 22234557789999999999997 57999999999999999987642
Q ss_pred eEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEE--EEcCCCCeEEEEEeCCCcEEE
Q 003840 547 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL--DFHPNKDDLICSCDGDGEIRY 624 (792)
Q Consensus 547 ~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl--~fspd~~~ll~sgs~Dg~I~i 624 (792)
...+.+|...|++++|++++ .|++|+.||+|++||++++......+.+|...|++| +|++++..+|++|+.|++|+|
T Consensus 259 ~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 259 SLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp SEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred eEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 24678899999999999864 899999999999999987556667788999999999 567766478889999999999
Q ss_pred EEcCCCeeEEEeeC-----CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003840 625 WSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 699 (792)
Q Consensus 625 wdl~~~~~~~~~~~-----~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~ 699 (792)
||++++++...+.+ .+.+++|+|++..+++++.|+.|++||++++.++..+.+|...|++|+|+|+|++|++|+.
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~ 417 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSA 417 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEET
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEEC
Confidence 99998876554432 3568999999999999999999999999999888888899999999999999999999999
Q ss_pred C-eEEEEECCCCCCcceEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCC
Q 003840 700 D-SVRVWTVGSGSEGECVHEL--SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTET 776 (792)
Q Consensus 700 d-~I~IwDl~s~~~~~~i~~~--~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg 776 (792)
| +|++||+... ........ ......+..++|+|++..+. ...+-.+..|+........+.+|...|.+|+|+|++
T Consensus 418 Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~ 495 (524)
T 2j04_B 418 DGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETS 495 (524)
T ss_dssp TTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECCCCCCCC-------------CCCSCCCEEECCST
T ss_pred CCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccCCceecccccCCcceeeecCCCceEEEEECCCCC
Confidence 9 9999998643 11111100 01122577899999998542 222223333333344445788999999999999996
Q ss_pred C---EEEEEeCCCcEEEeC
Q 003840 777 G---YVASASHDKFVKLWK 792 (792)
Q Consensus 777 ~---~LaSgs~DG~I~IWd 792 (792)
. +||+|+.||.|+||+
T Consensus 496 ~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 496 AGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp TTTTEEEEECTTSEEEEEE
T ss_pred CccHHHHhhccCceEEEEE
Confidence 4 999999999999995
No 59
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-33 Score=314.24 Aligned_cols=279 Identities=18% Similarity=0.328 Sum_probs=238.8
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~ 584 (792)
....+|...+.+.+++.++..+++++.|+.|+|||+.+++....+.. |...|++++|+|++++|++|+.||.|+|||+.
T Consensus 85 ~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp EECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 34447766654444443345688888999999999999998888775 88999999999999999999999999999998
Q ss_pred CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEEee---CCeeEEEEecCCCEEEEEEcCCe
Q 003840 585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFK---GGTAQMRFQPHLGRYLAAAAENV 660 (792)
Q Consensus 585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~ 660 (792)
+ +..+..+.+|...|.+++|++ .+|++++.||.|++||++. ...+..+. ..+.+++|+|++..+++++.|+.
T Consensus 165 ~-~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 240 (401)
T 4aez_A 165 S-QTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV 240 (401)
T ss_dssp T-CCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred C-CeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence 7 677888999999999999953 4778999999999999994 44555543 56788999999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCC-EEEEEe--CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003840 661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 736 (792)
Q Consensus 661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~-~Las~s--~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~ 736 (792)
|++||+++++.+..+..|...|.+++|+|++. ++++++ .| .|++||+.++ .++..+. +...+.+++|+|+++
T Consensus 241 v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~ 316 (401)
T 4aez_A 241 VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---ARVNTVD-AGSQVTSLIWSPHSK 316 (401)
T ss_dssp EEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---CEEEEEE-CSSCEEEEEECSSSS
T ss_pred EEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---CEEEEEe-CCCcEEEEEECCCCC
Confidence 99999999999999999999999999999765 666655 46 9999999876 5555554 567899999999999
Q ss_pred EEEEEE--cCCeEEEEECCCCcEE---EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 737 SLLVIG--CYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 737 ~L~sgs--~dg~I~IwDl~~~~~~---~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+|++++ .||.|+|||+.++... .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 999965 7999999999987655 4678999999999999999999999999999996
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.6e-32 Score=310.89 Aligned_cols=275 Identities=19% Similarity=0.281 Sum_probs=237.4
Q ss_pred eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEEC--CCCCeEEEEeCCCcEEEEe
Q 003840 505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS--PSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fs--pdg~~Lasgs~Dg~V~IWd 582 (792)
+..+.+|.+.|++++|++++ +|++|+.||.|++||+++++.+..+.+|...|.+++|+ +++.+|++|+.||.|++||
T Consensus 155 ~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd 233 (464)
T 3v7d_B 155 LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233 (464)
T ss_dssp EEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence 44567899999999999988 99999999999999999999999999999999999998 5778999999999999999
Q ss_pred CCCCCc----------------------eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---
Q 003840 583 ADNPGY----------------------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--- 637 (792)
Q Consensus 583 l~s~~~----------------------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--- 637 (792)
+.+... .+..+.+|...|.++... +. ++++++.||.|++||+++++++..+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 310 (464)
T 3v7d_B 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--GN-IVVSGSYDNTLIVWDVAQMKCLYILSGHT 310 (464)
T ss_dssp CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC--CC-EEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 987432 256778899999888544 43 67799999999999999999988875
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceE
Q 003840 638 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 716 (792)
Q Consensus 638 ~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i 716 (792)
..+.+++|++++..+++++.|+.|++||+++++++..+.+|...|.+++|+ +.+|++++.| .|++||+.++. ..
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~---~~ 385 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS---RK 385 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC---EE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc---ee
Confidence 457889999999999999999999999999999999999999999999997 6899999999 99999998753 33
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE--EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 717 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT--LTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 717 ~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~--~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
... .+...+..++|++++.+|++++ |+.|++||+.+++.+. +..|...|.+++|+ +..++++++.||.+.+|
T Consensus 386 ~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 386 FSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred eee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 333 3566788889999999999888 8999999999999884 56889999999997 44556666677766655
No 61
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-33 Score=301.79 Aligned_cols=249 Identities=21% Similarity=0.319 Sum_probs=211.0
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--CceeEEeccCCCCEEEEEECCC--CCeEEEEeCCCcEEEE
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVW 581 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t--~~~~~~l~~h~~~V~~i~fspd--g~~Lasgs~Dg~V~IW 581 (792)
..+.+|.+.|++++|+++|++||+|+.|++|+|||+++ .+.+.++.+|...|++++|+++ +++|++|+.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45789999999999999999999999999999999974 4678899999999999999874 8899999999999999
Q ss_pred eCCCCC-ceeEEecccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCee--EEEe---eCCeeEEEEecC------
Q 003840 582 DADNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSC--TRVF---KGGTAQMRFQPH------ 648 (792)
Q Consensus 582 dl~s~~-~~i~~~~~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~--~~~~---~~~~~~v~~sp~------ 648 (792)
|++++. ..+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++++.. ...+ ...+.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998743 3566778899999999999972 34777999999999999987632 2222 346788999987
Q ss_pred -------CCEEEEEEcCCeEEEEECCCCe----EEEEecCCCCCeEEEEEcCCC---CEEEEEeCC-eEEEEECCCCCCc
Q 003840 649 -------LGRYLAAAAENVVSILDAETQA----CRLSLQGHTKPIDSVCWDPSG---ELLASVSED-SVRVWTVGSGSEG 713 (792)
Q Consensus 649 -------~~~lla~s~dg~I~i~D~~t~~----~~~~l~~h~~~V~sv~~spdg---~~Las~s~d-~I~IwDl~s~~~~ 713 (792)
+..|++++.|+.|++||+++++ ....+.+|...|.+++|+|++ .+|++++.| +|+|||++.....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 4689999999999999998765 667889999999999999985 799999999 9999999764322
Q ss_pred ceEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 714 ECVHEL--SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 714 ~~i~~~--~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
.....+ ..+...+.+++|+|++++|++++.|+.|+||+...
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 222233 45677899999999999999999999999999763
No 62
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-33 Score=304.66 Aligned_cols=243 Identities=23% Similarity=0.406 Sum_probs=195.8
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-------CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t-------~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd 582 (792)
+|...|.+++|+|++++||+|+.|++|+|||++. .+.+..+.+|...|++++|+|++++|++|+.|++|+|||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 3999999999999999999999999999999853 456778899999999999999999999999999999999
Q ss_pred CCCCC---ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC--eeEEEee---CCeeEEEEecC--CCEE
Q 003840 583 ADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--SCTRVFK---GGTAQMRFQPH--LGRY 652 (792)
Q Consensus 583 l~s~~---~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~--~~~~~~~---~~~~~v~~sp~--~~~l 652 (792)
++..+ ..+..+.+|...|.+++|+|++. +|++|+.|++|++||+.++ +++..+. ..+.++.|+|+ +..+
T Consensus 136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 214 (330)
T 2hes_X 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL 214 (330)
T ss_dssp CCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEE
T ss_pred ccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEE
Confidence 95422 45678889999999999999975 6679999999999999876 5666654 45778999998 5678
Q ss_pred EEEEcCCeEEEEECCCC--------eEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC
Q 003840 653 LAAAAENVVSILDAETQ--------ACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 722 (792)
Q Consensus 653 la~s~dg~I~i~D~~t~--------~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~ 722 (792)
++++.|+.|++||++.+ .+...+.. |...|.+++|++++ +|++++.| .|+|||+.++...........|
T Consensus 215 ~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h 293 (330)
T 2hes_X 215 CSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH 293 (330)
T ss_dssp EEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred EEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc
Confidence 99999999999998764 44555655 89999999999765 78888888 9999998754211122334567
Q ss_pred CC-ceEEEEEeC--CCCEEEEEEcCCeEEEEECCC
Q 003840 723 GN-KFHSCVFHP--TYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 723 ~~-~i~si~fsp--dg~~L~sgs~dg~I~IwDl~~ 754 (792)
.. .|.+++|+| ++.+|++++.||.|+|||+.+
T Consensus 294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 66 899999999 688999999999999999865
No 63
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=309.38 Aligned_cols=287 Identities=17% Similarity=0.350 Sum_probs=237.2
Q ss_pred eeeeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEec-------------cCCCCEEEEEECC-CCCe
Q 003840 504 EANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLE-------------EHSSLITDVRFSP-SMPR 568 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-------------~h~~~V~~i~fsp-dg~~ 568 (792)
....+++|.+.|+|++|+| ++++||+|+.||.|+|||+.++.....+. +|...|++++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 4566788999999999999 99999999999999999999877665543 5999999999999 7789
Q ss_pred EEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCC--eEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEE
Q 003840 569 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQM 643 (792)
Q Consensus 569 Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~--~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v 643 (792)
|++++.||.|++||+.+ +..+..+. +...+.++.|++.+. .++++++.|+.|++||+++++.+..+. ..+.++
T Consensus 115 l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNT-LQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192 (408)
T ss_dssp EEEEETTSEEEEEETTT-TEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred EEEEeCCCeEEEeeCCC-Cccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence 99999999999999997 55555554 788899999998643 378899999999999999998877765 457889
Q ss_pred EEecCCCE-EEEEEcCCeEEEEECCCCe-EEEEe---------------cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEE
Q 003840 644 RFQPHLGR-YLAAAAENVVSILDAETQA-CRLSL---------------QGHTKPIDSVCWDPSGELLASVSED-SVRVW 705 (792)
Q Consensus 644 ~~sp~~~~-lla~s~dg~I~i~D~~t~~-~~~~l---------------~~h~~~V~sv~~spdg~~Las~s~d-~I~Iw 705 (792)
+|+|++.+ +++++.|+.|++||+++.. .+..+ ..|...|.+++|+|++++|++++.| .|++|
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 99999985 7789999999999998875 44444 5688899999999999999999999 99999
Q ss_pred ECCCCCCcceEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 003840 706 TVGSGSEGECVHEL--SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 782 (792)
Q Consensus 706 Dl~s~~~~~~i~~~--~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSg 782 (792)
|+.++......... ......+........+..+++++.++.|++||+.+++.+ .+.+|...|++++|+|++.+|+++
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 352 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG 352 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence 99887432221111 111112222233344566888888999999999999887 677899999999999999999999
Q ss_pred eCCCcEEEeC
Q 003840 783 SHDKFVKLWK 792 (792)
Q Consensus 783 s~DG~I~IWd 792 (792)
+.||.|+|||
T Consensus 353 ~~dg~i~iw~ 362 (408)
T 4a11_B 353 SRDCNILAWV 362 (408)
T ss_dssp ETTSCEEEEE
T ss_pred CCCCeEEEEe
Confidence 9999999996
No 64
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6e-34 Score=319.74 Aligned_cols=276 Identities=17% Similarity=0.320 Sum_probs=228.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------eeEEeccCC------------CCEEEEEECCCC
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----------SKTNLEEHS------------SLITDVRFSPSM 566 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~-----------~~~~l~~h~------------~~V~~i~fspdg 566 (792)
.|.+.|+|++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999999877 577888998 889999999998
Q ss_pred --CeEEEEeCCCcEEEEeCCCCCce--------------------------------------eEE-ecccCCCeEEEEE
Q 003840 567 --PRLATSSFDKTVRVWDADNPGYS--------------------------------------LRT-FMGHSASVMSLDF 605 (792)
Q Consensus 567 --~~Lasgs~Dg~V~IWdl~s~~~~--------------------------------------i~~-~~~h~~~V~sl~f 605 (792)
.+|++++.|+.|+|||+.+.... ... ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999999752110 112 3679999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCC-CeeEEE----------eeCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE--
Q 003840 606 HPNKDDLICSCDGDGEIRYWSINN-GSCTRV----------FKGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQAC-- 671 (792)
Q Consensus 606 spd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~----------~~~~~~~v~~sp~~-~~lla~s~dg~I~i~D~~t~~~-- 671 (792)
+|++. +|++| .|+.|++||++. +.++.. +...+.+++|+|++ ..+++++.|+.|++||+++++.
T Consensus 186 ~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99976 55577 799999999994 444442 23457889999998 8999999999999999999886
Q ss_pred --EEEecCCCC------------CeEEEEEcCCCCEEEEEeCCeEEEEECCC-CCCcceEEEeecCCCc-----------
Q 003840 672 --RLSLQGHTK------------PIDSVCWDPSGELLASVSEDSVRVWTVGS-GSEGECVHELSCNGNK----------- 725 (792)
Q Consensus 672 --~~~l~~h~~------------~V~sv~~spdg~~Las~s~d~I~IwDl~s-~~~~~~i~~~~~~~~~----------- 725 (792)
+..+..|.. .|.+++|+|++++|++++.+.|+|||+++ + .++..+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence 778888876 89999999999999999888999999986 4 344455555321
Q ss_pred ----eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEccc---------------------------------CCCeE
Q 003840 726 ----FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH---------------------------------EGLIA 768 (792)
Q Consensus 726 ----i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h---------------------------------~~~V~ 768 (792)
+..++|+|++++|++++.||.|+|||+.+++.+.+..| ...|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 33489999999999999999999999999988765544 35688
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEe
Q 003840 769 ALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 769 sl~fspdg~~LaSgs~DG~I~IW 791 (792)
+++|+|++.+||+++.|+ ++||
T Consensus 421 ~~~~~p~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNN-LYIF 442 (447)
T ss_dssp EEEECSSSSEEEEECSSC-EEEE
T ss_pred EEEECCCCCEEEEEecce-eeee
Confidence 999999999999998776 6666
No 65
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.6e-34 Score=305.23 Aligned_cols=283 Identities=19% Similarity=0.234 Sum_probs=216.4
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceeEEeccCCCCEEEEEECC--CCCeEEEEeCCCcEE
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVR 579 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~----~~~~~l~~h~~~V~~i~fsp--dg~~Lasgs~Dg~V~ 579 (792)
..+.+|.+.|+|++|+|++++||+|+.||.|+|||+.++ +....+.+|...|++++|+| ++.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 356799999999999999999999999999999999876 46677789999999999999 699999999999999
Q ss_pred EEeCCCCC--------ceeEEecccCCCeEEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeEEEe-------------
Q 003840 580 VWDADNPG--------YSLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVF------------- 636 (792)
Q Consensus 580 IWdl~s~~--------~~i~~~~~h~~~V~sl~fspd--~~~ll~sgs~Dg~I~iwdl~~~~~~~~~------------- 636 (792)
|||+++.. ..+..+..|...|.+++|+|+ +. +|++++.||.|++||+++++.+..+
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99998743 457788899999999999998 55 6669999999999999987654322
Q ss_pred ---eCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeE--EEEecCCCCCeEEEEEcCCC----CEEEEEeCC-eEE
Q 003840 637 ---KGGTAQMRFQPH---LGRYLAAAAENVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSG----ELLASVSED-SVR 703 (792)
Q Consensus 637 ---~~~~~~v~~sp~---~~~lla~s~dg~I~i~D~~t~~~--~~~l~~h~~~V~sv~~spdg----~~Las~s~d-~I~ 703 (792)
...+.++.|+|+ +..+++++.++.+.+|+...++. +..+.+|...|++++|+|++ ++|++++.| .|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 235678999997 88999999999998888888765 77788899999999999998 899999999 999
Q ss_pred EEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 003840 704 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC----YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 778 (792)
Q Consensus 704 IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~----dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~ 778 (792)
+||++.+.. .............+.+.+....+..+.. ...+.+|+....+.+ .+.+|...|++++|+|++++
T Consensus 244 iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 244 IFKITEKLS---PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp EEEEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred EEeCCCCcC---ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 999986532 2222222223333344444443433332 335556665555555 67789999999999999999
Q ss_pred EEEEeCCCcEEEeC
Q 003840 779 VASASHDKFVKLWK 792 (792)
Q Consensus 779 LaSgs~DG~I~IWd 792 (792)
|++|+.||.|+|||
T Consensus 321 l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 321 LSSAGDDGKVRLWK 334 (351)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEe
Confidence 99999999999996
No 66
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5e-33 Score=312.04 Aligned_cols=268 Identities=22% Similarity=0.409 Sum_probs=231.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003840 515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 592 (792)
Q Consensus 515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~--~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~ 592 (792)
+.+|+||++ ++||+|. |++|+|||+.+++.+..+. +|...|++|+|+|+|++|++|+.||.|+|||+.+ +..+..
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~-~~~~~~ 184 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRN 184 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC-CcEEEE
Confidence 678999976 4888775 9999999999999887665 6778899999999999999999999999999998 788899
Q ss_pred ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEEee---CCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003840 593 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAET 668 (792)
Q Consensus 593 ~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t 668 (792)
+.+|...|.+++|++ .++++|+.|+.+++||..... .+..+. ..+..+.+.+++..+++++.|+.|++||..+
T Consensus 185 ~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 185 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 999999999999874 478899999999999998754 334443 4567789999999999999999999999987
Q ss_pred Ce----EEEEecCCCCCeEEEEEcCCCC-EEEEE--eCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003840 669 QA----CRLSLQGHTKPIDSVCWDPSGE-LLASV--SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 740 (792)
Q Consensus 669 ~~----~~~~l~~h~~~V~sv~~spdg~-~Las~--s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s 740 (792)
++ .+.....|...|.+++|+|++. +++++ +.| .|++||+.++ .++..+.. ...+.++.|+++++.+++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~-~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDA-HSQVCSILWSPHYKELIS 337 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeecc-ccceeeeeecCCCCeEEE
Confidence 64 4566778999999999999665 55554 456 9999999877 56665554 457889999999999988
Q ss_pred EE--cCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 741 IG--CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 741 gs--~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
++ .|+.|+|||+.+++++ .+.+|.+.|++++|+|||.+||||+.||+|+|||
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6899999999999887 7889999999999999999999999999999997
No 67
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.7e-34 Score=325.75 Aligned_cols=281 Identities=18% Similarity=0.306 Sum_probs=222.9
Q ss_pred eeeeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeE--EeccCCCCEEEEEECC-CCCeEEEEeCCCcEE
Q 003840 504 EANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSP-SMPRLATSSFDKTVR 579 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~--~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~ 579 (792)
......+|...|+||+|+| ++++||+|+.||.|+|||+.+++... .+.+|.+.|++|+|+| ++.+|++|+.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 3456678999999999999 66799999999999999998776544 4568999999999998 688999999999999
Q ss_pred EEeCCCCCceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---eCCeeEEEEecCCCE-E
Q 003840 580 VWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGR-Y 652 (792)
Q Consensus 580 IWdl~s~~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~-l 652 (792)
|||+++ . .+..+. .+...+.+++|++++. +|++|+.||.|++||++.. .+..+ ...+.+++|+|++.. +
T Consensus 191 iwd~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 191 LQDFKG-N-ILRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp EEETTS-C-EEEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred EeeccC-C-ceeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCCceEE
Confidence 999985 3 333332 2345678999999976 6669999999999999754 33333 456888999999874 5
Q ss_pred EEEEcCCeEEEEECCCCeEEE---EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCC----
Q 003840 653 LAAAAENVVSILDAETQACRL---SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN---- 724 (792)
Q Consensus 653 la~s~dg~I~i~D~~t~~~~~---~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~---- 724 (792)
++++.|+.|+|||+++.+... ...+|...|++++|+|+|.+|++++.| .|+|||+.++. +...+..|..
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~---~~~~~~~~~~~~~~ 343 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD---CPLGLIPHPHRHFQ 343 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS---SEEEECCCCCCCCS
T ss_pred EEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc---cceEEecccccccc
Confidence 677889999999998865433 335699999999999999999999999 99999998763 3333333321
Q ss_pred --ceEEEEEeCCCCEEEEEEc------------CCeEEEEECCCCcEE-EE-cccCCCeEEE-EEeCCCCEEEEEeCCCc
Q 003840 725 --KFHSCVFHPTYPSLLVIGC------------YQSLELWNMSENKTM-TL-TAHEGLIAAL-AVSTETGYVASASHDKF 787 (792)
Q Consensus 725 --~i~si~fspdg~~L~sgs~------------dg~I~IwDl~~~~~~-~~-~~h~~~V~sl-~fspdg~~LaSgs~DG~ 787 (792)
.+..+.|++++.+++++.. ++.|++||..+++.+ .+ .+|...|.++ +|+|+|.+||+|+ |+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~ 422 (435)
T 4e54_B 344 HLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYH 422 (435)
T ss_dssp SSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSE
T ss_pred cceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCc
Confidence 2345577777777776643 357999999999887 33 4688888887 6999999999876 889
Q ss_pred EEEeC
Q 003840 788 VKLWK 792 (792)
Q Consensus 788 I~IWd 792 (792)
|+|||
T Consensus 423 i~iW~ 427 (435)
T 4e54_B 423 ILIWS 427 (435)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 99997
No 68
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1e-32 Score=309.57 Aligned_cols=296 Identities=18% Similarity=0.314 Sum_probs=246.9
Q ss_pred cCCCCCceeccCCCCCCCCCcceEEEEeCCCeeee-cCCCeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCC
Q 003840 410 THTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLT-SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRD 488 (792)
Q Consensus 410 t~tp~~~~~~p~~p~~~~~~k~~l~~s~Dg~~~~s-s~s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d 488 (792)
..+|.+++.+|.+...-.. .++.||+++...+. ++..+|||+.+|+...
T Consensus 90 ~~~p~~~l~ap~~~~d~y~--~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~---------------------------- 139 (420)
T 4gga_A 90 PSLPDRILDAPEIRNDYYL--NLVDWSSGNVLAVALDNSVYLWSASSGDILQ---------------------------- 139 (420)
T ss_dssp CSSCSEEEECTTCCCCTTC--BCEEECTTSEEEEEETTEEEEEETTTCCEEE----------------------------
T ss_pred CCCCceEEECCCCcccccc--eeEEECCCCEEEEEeCCEEEEEECCCCCEEE----------------------------
Confidence 3567888888887754332 47899987633222 3444889988875431
Q ss_pred CCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCe
Q 003840 489 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 568 (792)
Q Consensus 489 ~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~ 568 (792)
+..+.+|...|+||+|+|||++||+|+.||.|+|||+++++.+..+.+|...|.++.|+ +.+
T Consensus 140 ----------------~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~ 201 (420)
T 4gga_A 140 ----------------LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYI 201 (420)
T ss_dssp ----------------EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTE
T ss_pred ----------------EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCE
Confidence 22356788899999999999999999999999999999999999999999999999885 679
Q ss_pred EEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE----EE---eeCCee
Q 003840 569 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT----RV---FKGGTA 641 (792)
Q Consensus 569 Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~----~~---~~~~~~ 641 (792)
|++|+.|+.+++||.......+..+.+|...+..+.|++++. ++++++.|+.|++||+.+++.. .. ....+.
T Consensus 202 l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~ 280 (420)
T 4gga_A 202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 280 (420)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEE
T ss_pred EEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccceEEeeccccccceeeeeecccCCcee
Confidence 999999999999999987788889999999999999999976 5669999999999999876532 22 345678
Q ss_pred EEEEecCCCEEEEE---EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe--CC-eEEEEECCCCCCcce
Q 003840 642 QMRFQPHLGRYLAA---AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGEC 715 (792)
Q Consensus 642 ~v~~sp~~~~lla~---s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s--~d-~I~IwDl~s~~~~~~ 715 (792)
.++|+|.+..+++. +.|+.|++||+++++++..+..| ..+.++.|+++++.|++++ .| .|+|||+.++ .+
T Consensus 281 ~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~---~~ 356 (420)
T 4gga_A 281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---AK 356 (420)
T ss_dssp EEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---CE
T ss_pred eeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---cE
Confidence 89999988766543 35899999999999999888755 5688999999999888765 45 8999999876 78
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 716 i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
+..+.+|...|.+++|+|++.+|++++.|++|+|||+.+....
T Consensus 357 v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 357 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 8899999999999999999999999999999999999876544
No 69
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.4e-33 Score=339.89 Aligned_cols=285 Identities=18% Similarity=0.311 Sum_probs=254.6
Q ss_pred eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
++..+.+.+|.+.|+|++|+|+|++||+|+.||.|+|||+.+++.+..+..|...|++++|+|++++|++++.||.|+||
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeEEEee---CCeeEEEEec-CCCEEEEEE
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFK---GGTAQMRFQP-HLGRYLAAA 656 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~---~~~~~v~~sp-~~~~lla~s 656 (792)
|+.+ +..+..+.+|...|++++|+|++.. |++++.||.|++||+.++ .....+. ..+.+++|+| ++..+++++
T Consensus 83 ~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 83 NYNT-GEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp ETTT-CCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred ECCC-CcEEEEEecCCCCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 9997 6778888999999999999999874 559999999999999987 5555554 4578899999 778899999
Q ss_pred cCCeEEEEECCCCeEEEEecCCC-CCeEEEEEcC--CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe
Q 003840 657 AENVVSILDAETQACRLSLQGHT-KPIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 732 (792)
Q Consensus 657 ~dg~I~i~D~~t~~~~~~l~~h~-~~V~sv~~sp--dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fs 732 (792)
.|+.|++||++++.....+..+. ..|.+++|+| ++.+|++++.| .|++||+.++ .++..+..|...|.+++|+
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~ 237 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFH 237 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEc
Confidence 99999999999887777776654 8899999999 99999999999 9999999776 6788888899999999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC--EEEEEeCCCcEEEeC
Q 003840 733 PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG--YVASASHDKFVKLWK 792 (792)
Q Consensus 733 pdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~--~LaSgs~DG~I~IWd 792 (792)
|++.+|++++.||.|++||+.+++.+ .+..|...|.+++|+|++. ++++++ |+.+.+|+
T Consensus 238 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp SSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 99999999999999999999998877 6778889999999999987 455554 55666663
No 70
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.9e-34 Score=311.27 Aligned_cols=250 Identities=18% Similarity=0.282 Sum_probs=202.5
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEECC--CCCeEEEEeCCCcEEEEe
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWd 582 (792)
.+.+|.+.|++++|+++|++||+|+.|++|+|||+.++. .+..+.+|...|++++|++ ++.+|++|+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456999999999999999999999999999999998775 4678899999999999986 488999999999999999
Q ss_pred CCCCC-ceeEEecccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCe
Q 003840 583 ADNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 660 (792)
Q Consensus 583 l~s~~-~~i~~~~~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~ 660 (792)
++++. ..+..+.+|...|.+++|+|++ ..+|++|+.|+.|++||++.+.....
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~------------------------- 142 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV------------------------- 142 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE-------------------------
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce-------------------------
Confidence 98743 4566788999999999999983 35777999999999999876531110
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCC-----------------CCEEEEEeCC-eEEEEECCCCCCcceEEEeecC
Q 003840 661 VSILDAETQACRLSLQGHTKPIDSVCWDPS-----------------GELLASVSED-SVRVWTVGSGSEGECVHELSCN 722 (792)
Q Consensus 661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spd-----------------g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~ 722 (792)
...+.+|...|.+++|+|+ +++|++++.| .|++||++......++..+.+|
T Consensus 143 -----------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h 211 (316)
T 3bg1_A 143 -----------KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH 211 (316)
T ss_dssp -----------CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred -----------eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence 0112234444555555554 5789999999 9999999755444567788899
Q ss_pred CCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCC---c--EEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 723 GNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSEN---K--TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 723 ~~~i~si~fspdg----~~L~sgs~dg~I~IwDl~~~---~--~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
...|.+++|+|++ .+|++++.|++|+|||+.+. . ...+..|...|++++|+|++.+||+++.||.|+||+
T Consensus 212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 9999999999986 88999999999999999763 1 124567899999999999999999999999999996
No 71
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=8.4e-34 Score=306.47 Aligned_cols=275 Identities=14% Similarity=0.126 Sum_probs=236.2
Q ss_pred eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEE
Q 003840 505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRV 580 (792)
Q Consensus 505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~---~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~I 580 (792)
+....+|.+.|++++|+|++++|++++.||.|+|||+.++. ....+..|...|++++|+|+++ +|++|+.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 34456899999999999999999999999999999998877 3455668999999999999999 9999999999999
Q ss_pred EeC-CCCCceeEEecc--cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC---------CeeEEEe--eCCeeEEEEe
Q 003840 581 WDA-DNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---------GSCTRVF--KGGTAQMRFQ 646 (792)
Q Consensus 581 Wdl-~s~~~~i~~~~~--h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~---------~~~~~~~--~~~~~~v~~s 646 (792)
||+ .+ + ....+.+ |...|.+++|+| + .+|++++.|+.|++||+++ ++++..+ ...+.+++|+
T Consensus 84 wd~~~~-~-~~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (342)
T 1yfq_A 84 VDLIGS-P-SFQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159 (342)
T ss_dssp ECSSSS-S-SEEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred EEeccC-C-ceEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec
Confidence 999 76 3 3477788 999999999999 4 4677999999999999987 5554443 4567788898
Q ss_pred cCCCEEEEEEcCCeEEEEECCC-Ce--EEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCC---CcceEEE
Q 003840 647 PHLGRYLAAAAENVVSILDAET-QA--CRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGS---EGECVHE 718 (792)
Q Consensus 647 p~~~~lla~s~dg~I~i~D~~t-~~--~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~---~~~~i~~ 718 (792)
+++ +++++.++.|++||+++ +. .......|...|.+++|+| ++++|++++.| .|++|++.... ....+..
T Consensus 160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 876 99999999999999998 43 4445566888999999999 99999999999 99999997651 0244555
Q ss_pred eecCCC---------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEccc-CCCeEEEEEeCCCCEEEEEeCCCc
Q 003840 719 LSCNGN---------KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAALAVSTETGYVASASHDKF 787 (792)
Q Consensus 719 ~~~~~~---------~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h-~~~V~sl~fspdg~~LaSgs~DG~ 787 (792)
+..+.. .|.+++|+|++++|++++.||.|++||+.+++.+ .+..| ...|++++ +++++|++|+.||.
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 666644 8999999999999999999999999999999877 66777 99999999 99999999999998
No 72
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=293.04 Aligned_cols=268 Identities=22% Similarity=0.397 Sum_probs=227.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003840 515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 592 (792)
Q Consensus 515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~--~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~ 592 (792)
+.+|+||+++ +||+|. |++|+|||+++++++..+. +|...|++++|+|++++|++|+.||+|+|||+++ ++.+..
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~-~~~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRN 104 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC-ceeEEE
Confidence 5789999986 777765 9999999999999888765 6788899999999999999999999999999998 788899
Q ss_pred ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEe---eCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003840 593 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAET 668 (792)
Q Consensus 593 ~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~---~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t 668 (792)
+.+|...+.++.+.+ .++++++.++.+++|+...... +..+ ...+..+.+.+++..+++++.|+.|++||+++
T Consensus 105 ~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 105 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 999999998887764 3788999999999999987643 3333 34567788999999999999999999999987
Q ss_pred Ce----EEEEecCCCCCeEEEEEcCCCC-EEE--EEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003840 669 QA----CRLSLQGHTKPIDSVCWDPSGE-LLA--SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 740 (792)
Q Consensus 669 ~~----~~~~l~~h~~~V~sv~~spdg~-~La--s~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s 740 (792)
++ .......+...|.++++++++. +++ +++.+ .|++||.... ... ....+...+..+.|++++..+++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACL-SAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---CEE-EEEECSSCEEEEEEETTTTEEEE
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---ccc-ccccceeeeeeeeecccccceEE
Confidence 64 3455566888999999999766 332 34455 8999999765 232 33446678999999999999887
Q ss_pred EE--cCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 741 IG--CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 741 gs--~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
++ .|+.|+|||+.+++++ .+.+|.+.|++++|+||+++||||+.||+|+|||
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6899999999999887 7889999999999999999999999999999997
No 73
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.1e-34 Score=313.23 Aligned_cols=278 Identities=14% Similarity=0.126 Sum_probs=222.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-------eEEEEECCCCce----------eEEeccCCCCEEEEEECCCCCeEEEE--
Q 003840 512 TSKVICCHFSSDGKLLATGGHDK-------KAVLWHTDTLKS----------KTNLEEHSSLITDVRFSPSMPRLATS-- 572 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg-------~I~vWdl~t~~~----------~~~l~~h~~~V~~i~fspdg~~Lasg-- 572 (792)
.-+|+|++|+|||++||+|+.|. +|+||++..... ...+..|...|.+++|+ ++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 35799999999999999997543 599999875432 12456788889988875 4466655
Q ss_pred ---------eCCCcEEEEeCCCCCceeEEec--------ccCCCeEEEEEcCCCCeEE-EEEeCCCcEEEEEcCCCeeEE
Q 003840 573 ---------SFDKTVRVWDADNPGYSLRTFM--------GHSASVMSLDFHPNKDDLI-CSCDGDGEIRYWSINNGSCTR 634 (792)
Q Consensus 573 ---------s~Dg~V~IWdl~s~~~~i~~~~--------~h~~~V~sl~fspd~~~ll-~sgs~Dg~I~iwdl~~~~~~~ 634 (792)
+.|+.|++|++......+.... .+...+.+++|+|||..++ ++++.|++|+|||+++++++.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 4578899999886544333221 3456689999999998765 455679999999999999887
Q ss_pred Eee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE--EecCCCCCeEEEEEcCCCCEEEEEeCC-----eEEEE
Q 003840 635 VFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED-----SVRVW 705 (792)
Q Consensus 635 ~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~--~l~~h~~~V~sv~~spdg~~Las~s~d-----~I~Iw 705 (792)
.+. ..+.+++|+|++.++++++ ++.+.+|+..++..+. ....|...|.+++|+|++.++++++.+ .+++|
T Consensus 172 ~~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 172 EIETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred EeCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence 765 4578899999998887776 5566777777766554 345688889999999999999998755 47788
Q ss_pred ECCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EE-cccCCCeEEEEEeCCCCEEEEE
Q 003840 706 TVGSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL-TAHEGLIAALAVSTETGYVASA 782 (792)
Q Consensus 706 Dl~s~~~-~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~-~~h~~~V~sl~fspdg~~LaSg 782 (792)
++..... ......+..|...|++++|+|++++|++|+.|+.|+|||+.+++++ .+ .+|...|++|+|+|||++||+|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~ 330 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV 330 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence 8865432 1234567788899999999999999999999999999999999987 43 6899999999999999999999
Q ss_pred eCCCcEEEeC
Q 003840 783 SHDKFVKLWK 792 (792)
Q Consensus 783 s~DG~I~IWd 792 (792)
+.|++|+|||
T Consensus 331 S~D~tvrvw~ 340 (365)
T 4h5i_A 331 SAANTIHIIK 340 (365)
T ss_dssp ETTSEEEEEE
T ss_pred eCCCeEEEEE
Confidence 9999999996
No 74
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8e-34 Score=316.33 Aligned_cols=272 Identities=15% Similarity=0.161 Sum_probs=232.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003840 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 593 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~ 593 (792)
.+++++|+|+|++|++|+.||.|++||+.+++....+..| ..+....|++++++|++|+.||.|+|||+.+ +.....+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~ 135 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF-NLQREID 135 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS-CEEEEET
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC-cceeeec
Confidence 3457999999999999999999999999988877777766 5556668899999999999999999999986 6777777
Q ss_pred cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003840 594 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 670 (792)
Q Consensus 594 ~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~ 670 (792)
.+|...|++++|+|++. +|++++.|+.|++||+++++.+..+. ..+.+++|+|++..+++++.|+.|++||+++++
T Consensus 136 ~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 89999999999999976 66699999999999999998887765 457889999999999999999999999999999
Q ss_pred EEEEecC---CCCCeEE---------------------EEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe-ecCCC
Q 003840 671 CRLSLQG---HTKPIDS---------------------VCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL-SCNGN 724 (792)
Q Consensus 671 ~~~~l~~---h~~~V~s---------------------v~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~-~~~~~ 724 (792)
.+..+.. +...|.+ ++|+|++++|++++.| .|++||++++ ..+..+ ..+..
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~ 291 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTC 291 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSS
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCC
Confidence 9988875 3344444 4557899999999999 9999999876 344443 45778
Q ss_pred ceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCcE--EEEcc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 725 KFHSCVFHPTYP-SLLVIGCYQSLELWNMSENKT--MTLTA-HEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 725 ~i~si~fspdg~-~L~sgs~dg~I~IwDl~~~~~--~~~~~-h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.+.+++|+|++. +|++++.||.|++||+.+++. ..+.. |...|+++.| +++++|++++.||.|+|||
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 899999999999 999999999999999998754 35554 7778888865 5788999999999999996
No 75
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.7e-33 Score=312.88 Aligned_cols=270 Identities=23% Similarity=0.467 Sum_probs=239.8
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl 583 (792)
.+....+|...|+|++| ++++|++|+.||.|++||+.+++.+..+.+|...|++++| ++++|++|+.||.|+|||+
T Consensus 125 ~~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 125 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred EEecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence 33445577888999988 7889999999999999999999999999999999999999 7889999999999999999
Q ss_pred CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE---EEee---CCeeEEEEecCCCEEEEEEc
Q 003840 584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVFK---GGTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~---~~~~---~~~~~v~~sp~~~~lla~s~ 657 (792)
.+ +..+..+.+|...|.+++|+++ ++++|+.||.|++||++++... ..+. ..+.++.| ++..+++++.
T Consensus 201 ~~-~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NT-GEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SS-CCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CC-CcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 98 6788899999999999999743 7789999999999999987654 3333 34555666 7789999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003840 658 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 736 (792)
Q Consensus 658 dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~ 736 (792)
|+.|++||+++++.+..+.+|...|.+++| ++.+|++++.| .|++||++++ .++..+..|...|.+++| ++.
T Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~--~~~ 347 (435)
T 1p22_A 275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNK 347 (435)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEC--CSS
T ss_pred CCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC---CEEEEEeCCcCcEEEEEe--cCC
Confidence 999999999999999999999999999999 47899999998 9999999876 788888999999999999 788
Q ss_pred EEEEEEcCCeEEEEECCCCc---------EE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 737 SLLVIGCYQSLELWNMSENK---------TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 737 ~L~sgs~dg~I~IwDl~~~~---------~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+|++++.||.|++||+.++. .+ .+.+|.+.|.+++| ++.+|++|+.||.|+|||
T Consensus 348 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 348 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 99999999999999997654 44 78899999999999 788999999999999997
No 76
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.3e-32 Score=292.47 Aligned_cols=282 Identities=18% Similarity=0.273 Sum_probs=238.5
Q ss_pred cceEEEEeC-CCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003840 430 KPLMMFGTD-GAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 505 (792)
Q Consensus 430 k~~l~~s~D-g~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~ 505 (792)
...+.|+|+ +.++++++.+ +|||+.+.+.. .....
T Consensus 41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~-----------------------------------------~~~~~ 79 (340)
T 4aow_A 41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETN-----------------------------------------YGIPQ 79 (340)
T ss_dssp EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC-----------------------------------------SEEEE
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc-----------------------------------------cceee
Confidence 446788887 5677765443 88987654321 11245
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 585 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s 585 (792)
..+++|...|.+++|+|+|++|++|+.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+..
T Consensus 80 ~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~ 159 (340)
T 4aow_A 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG 159 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred EEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCceeEEecccCCCeEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeE
Q 003840 586 PGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVV 661 (792)
Q Consensus 586 ~~~~i~~~~~h~~~V~sl~fspd~~-~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I 661 (792)
.......+.+|...|.+++|++++. .++++++.|+.|++||+++++++..+. ..+.+++|+|++..+++++.|+.|
T Consensus 160 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i 239 (340)
T 4aow_A 160 VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQA 239 (340)
T ss_dssp CEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred CceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 5555666778999999999998754 467799999999999999999888775 457889999999999999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEE---------EeecCCCceEEEEEe
Q 003840 662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH---------ELSCNGNKFHSCVFH 732 (792)
Q Consensus 662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~---------~~~~~~~~i~si~fs 732 (792)
++||+++.+.+..+..+ ..|.+++|+|++.+++++.++.|++||++++ ..+. ....|...|.+++|+
T Consensus 240 ~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~~s 315 (340)
T 4aow_A 240 MLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGK---IIVDELKQEVISTSSKAEPPQCTSLAWS 315 (340)
T ss_dssp EEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTT---EEEEEECCC-------CCCCCEEEEEEC
T ss_pred EEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCC---eEEEeccccceeeeccCCCCCEEEEEEC
Confidence 99999999999888754 6799999999998887776669999999865 3332 234577889999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCc
Q 003840 733 PTYPSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 733 pdg~~L~sgs~dg~I~IwDl~~~~ 756 (792)
|++++|++|+.||.|+|||+.+|+
T Consensus 316 ~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 316 ADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999999999999999998875
No 77
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-32 Score=321.86 Aligned_cols=292 Identities=18% Similarity=0.296 Sum_probs=254.9
Q ss_pred CCCcceeccCCc-ceeeeeeeecCCCC-eEEEEEcC--CCCEEEEEeCCCeEEEEECCCC--------ceeEEeccCCCC
Q 003840 489 AGGRGMDVSQGF-SFKEANSVRASTSK-VICCHFSS--DGKLLATGGHDKKAVLWHTDTL--------KSKTNLEEHSSL 556 (792)
Q Consensus 489 ~~~~~~d~~~~~-~~~~~~~l~~H~~~-V~~lafsp--dg~~Lasgs~Dg~I~vWdl~t~--------~~~~~l~~h~~~ 556 (792)
..+.+|++..+. ..+....+.+|.+. |++++|+| ++++||+|+.||.|+|||+.++ +.+..+..|...
T Consensus 39 ~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (615)
T 1pgu_A 39 KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP 118 (615)
T ss_dssp TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSC
T ss_pred CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccccc
Confidence 356677776541 22577889999999 99999999 9999999999999999999754 677788899999
Q ss_pred EEEEEECCCCCeEEEEeCC----CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 003840 557 ITDVRFSPSMPRLATSSFD----KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 632 (792)
Q Consensus 557 V~~i~fspdg~~Lasgs~D----g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~ 632 (792)
|.+++|+|++++|++++.+ +.|++||. +..+..+.+|...|.+++|+|++..++++++.|+.|++||+.++++
T Consensus 119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~ 195 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDS---GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 195 (615)
T ss_dssp EEEEEECTTSSEEEEEECCSSCSEEEEETTT---CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE
T ss_pred EEEEEEeCCCCEEEEeccCCCCccEEEEEEC---CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce
Confidence 9999999999999999988 68888883 4678889999999999999999887888999999999999999998
Q ss_pred EEEeeC------CeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEe-c---CCCCCeEEEEEcCCCCEEEEEeCC-
Q 003840 633 TRVFKG------GTAQMRFQPH-LGRYLAAAAENVVSILDAETQACRLSL-Q---GHTKPIDSVCWDPSGELLASVSED- 700 (792)
Q Consensus 633 ~~~~~~------~~~~v~~sp~-~~~lla~s~dg~I~i~D~~t~~~~~~l-~---~h~~~V~sv~~spdg~~Las~s~d- 700 (792)
+..+.. .+.+++|+|+ +..+++++.|+.|++||+++++.+..+ . .|...|.+++|+ ++.+|++++.|
T Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~ 274 (615)
T 1pgu_A 196 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA 274 (615)
T ss_dssp EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC
Confidence 887753 5678999999 999999999999999999999999998 6 899999999999 99999999998
Q ss_pred eEEEEECCCCCCcceEEEeecC----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCC
Q 003840 701 SVRVWTVGSGSEGECVHELSCN----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE 775 (792)
Q Consensus 701 ~I~IwDl~s~~~~~~i~~~~~~----~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspd 775 (792)
.|++||++++ ..+..+..+ ...+.++.|. ++.+|++++.++.|++||+.+++.+ .+.+|...|++++| |+
T Consensus 275 ~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 275 TIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP 349 (615)
T ss_dssp EEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred cEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence 9999999876 666666665 3567788886 8999999999999999999987766 67788888999888 77
Q ss_pred CCEEEEEeCCCcEEEeC
Q 003840 776 TGYVASASHDKFVKLWK 792 (792)
Q Consensus 776 g~~LaSgs~DG~I~IWd 792 (792)
|++++.||.|++||
T Consensus 350 ---l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 350 ---LISGSYDGRIMEWS 363 (615)
T ss_dssp ---TEEEETTSCEEETT
T ss_pred ---cEEECCCCeEEEEE
Confidence 77777888888875
No 78
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.8e-32 Score=304.16 Aligned_cols=273 Identities=26% Similarity=0.502 Sum_probs=240.8
Q ss_pred eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
++....+.+|.+.|.+ +++++|++|++|+.||.|+|||+.+++.+..+.+|...|++++|+ +.+|++|+.||.|++|
T Consensus 108 ~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW 184 (445)
T ss_dssp CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred cceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence 3455678999987643 245568899999999999999999999999999999999999997 5699999999999999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcC
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAE 658 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~d 658 (792)
|+.+ +..+..+.+|...|.+++|++ .++++|+.||.|++||+++++++..+.. .+.++.+ ++..+++++.|
T Consensus 185 d~~~-~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d 258 (445)
T 2ovr_B 185 NAET-GECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYD 258 (445)
T ss_dssp ETTT-TEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETT
T ss_pred ECCc-CcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCC
Confidence 9987 678889999999999999974 3577999999999999999998887764 4555666 78899999999
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003840 659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~ 737 (792)
+.|++||+++++++..+.+|...|.+++| ++.+|++++.| .|++||++++ .++..+..|...+.++.++ +++
T Consensus 259 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~ 331 (445)
T 2ovr_B 259 FMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DNI 331 (445)
T ss_dssp SCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TTE
T ss_pred CEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEEe--CCE
Confidence 99999999999999999999999999999 78999999998 9999999876 6788888888888888774 669
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EEcc---cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 738 LLVIGCYQSLELWNMSENKTM-TLTA---HEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 738 L~sgs~dg~I~IwDl~~~~~~-~~~~---h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
|++++.||.|++||+.+++.+ .+.. |...|++++|+ +++|++|+.||.|+|||
T Consensus 332 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 999999999999999998877 4544 88899999995 67999999999999996
No 79
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=300.01 Aligned_cols=252 Identities=20% Similarity=0.310 Sum_probs=215.3
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeEEeccCCCCEEEEEECCC--CCeEEEEeCCCcEE
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVR 579 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~--t~~~~~~l~~h~~~V~~i~fspd--g~~Lasgs~Dg~V~ 579 (792)
.+..+.+|.+.|++++|+|++++||+|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++++.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 456789999999999999999999999999999999998 66778889999999999999987 89999999999999
Q ss_pred EEeCCCCC-ceeEEecccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEc
Q 003840 580 VWDADNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 580 IWdl~s~~-~~i~~~~~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~ 657 (792)
|||+.+.. ..+..+..|...|.+++|+|+. ..+|++++.|+.|++||++.+....
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~----------------------- 139 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS----------------------- 139 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC-----------------------
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee-----------------------
Confidence 99999732 2677788899999999999983 3466689999999999988653211
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeEEEEEcC-------------CCCEEEEEeCC-eEEEEECCCCCCc-ceEEEeecC
Q 003840 658 ENVVSILDAETQACRLSLQGHTKPIDSVCWDP-------------SGELLASVSED-SVRVWTVGSGSEG-ECVHELSCN 722 (792)
Q Consensus 658 dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp-------------dg~~Las~s~d-~I~IwDl~s~~~~-~~i~~~~~~ 722 (792)
...+..|...|.+++|+| ++.+|++++.| .|++||++++... ..+..+..|
T Consensus 140 --------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h 205 (379)
T 3jrp_A 140 --------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 205 (379)
T ss_dssp --------------EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred --------------eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc
Confidence 122345888899999999 69999999999 9999999876432 456678889
Q ss_pred CCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCCc---E-EE--EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 723 GNKFHSCVFHPT---YPSLLVIGCYQSLELWNMSENK---T-MT--LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 723 ~~~i~si~fspd---g~~L~sgs~dg~I~IwDl~~~~---~-~~--~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
...|.+++|+|+ +.+|++++.||.|+|||+.++. . .. ...|...|++++|+|++++|++++.||.|+|||
T Consensus 206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 999999999999 8999999999999999999874 2 22 234889999999999999999999999999996
No 80
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-31 Score=298.34 Aligned_cols=243 Identities=15% Similarity=0.278 Sum_probs=214.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003840 511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 590 (792)
Q Consensus 511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i 590 (792)
|...|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++++.||.|++||++.....+
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~ 210 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQI 210 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCccee
Confidence 7888999999999999999999999999999999999999999999999999 56799999999999999999767888
Q ss_pred EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEE---cCCeEEEE
Q 003840 591 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAA---AENVVSIL 664 (792)
Q Consensus 591 ~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s---~dg~I~i~ 664 (792)
..+.+|...|.+++|+|++. +|++|+.|+.|++||+++++.+..+. ..+.+++|+|++..+++++ .|+.|++|
T Consensus 211 ~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 211 GTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp EEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred eEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 89999999999999999865 66699999999999999988887664 4678899999887777655 49999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe--CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003840 665 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 741 (792)
Q Consensus 665 D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s--~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sg 741 (792)
|+++++.+..+. +...|.+++|+|++++|++++ .| .|++||+.++. ......+..|...|.+++|+|++.+|+++
T Consensus 290 d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 367 (401)
T 4aez_A 290 NAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-LTKQVDIPAHDTRVLYSALSPDGRILSTA 367 (401)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-EEEEEEEECCSSCCCEEEECTTSSEEEEE
T ss_pred ECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-ceeEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 999999988886 667899999999999999854 56 99999998742 23445577899999999999999999999
Q ss_pred EcCCeEEEEECCCCcEE
Q 003840 742 GCYQSLELWNMSENKTM 758 (792)
Q Consensus 742 s~dg~I~IwDl~~~~~~ 758 (792)
+.||.|++||+.+++.+
T Consensus 368 ~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 368 ASDENLKFWRVYDGDHV 384 (401)
T ss_dssp CTTSEEEEEECCC----
T ss_pred eCCCcEEEEECCCCccc
Confidence 99999999999998866
No 81
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.1e-32 Score=291.15 Aligned_cols=246 Identities=20% Similarity=0.370 Sum_probs=209.5
Q ss_pred eEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-CceeEEecccCCCeEEEEEcCC-CCeEEEEEeCCCcEEE
Q 003840 547 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP-GYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRY 624 (792)
Q Consensus 547 ~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~-~~~i~~~~~h~~~V~sl~fspd-~~~ll~sgs~Dg~I~i 624 (792)
+..+.+|...|++++|++++++||+|+.|++|+|||+... ...+..+.+|...|++++|+++ ...+|++|+.|++|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 3457789999999999999999999999999999999752 3567889999999999999864 2457889999999999
Q ss_pred EEcCCCe--eEEEe---eCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCCe--EEEEecCCCCCeEEEEEcCC-----
Q 003840 625 WSINNGS--CTRVF---KGGTAQMRFQPH--LGRYLAAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPS----- 690 (792)
Q Consensus 625 wdl~~~~--~~~~~---~~~~~~v~~sp~--~~~lla~s~dg~I~i~D~~t~~--~~~~l~~h~~~V~sv~~spd----- 690 (792)
||+++++ .+..+ ...+.+++|+|+ +..+++++.|+.|++||+++.. ....+.+|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 33333 356888999997 7899999999999999998763 24567789999999999997
Q ss_pred --------CCEEEEEeCC-eEEEEECCCCCC-cceEEEeecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCc-
Q 003840 691 --------GELLASVSED-SVRVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTY---PSLLVIGCYQSLELWNMSENK- 756 (792)
Q Consensus 691 --------g~~Las~s~d-~I~IwDl~s~~~-~~~i~~~~~~~~~i~si~fspdg---~~L~sgs~dg~I~IwDl~~~~- 756 (792)
+++|++++.| .|+|||++++.. ...+..+.+|...|.+++|+|++ .+|++++.|++|+|||+.+..
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence 5799999999 999999987542 23567788999999999999985 899999999999999998743
Q ss_pred --E-EEE--cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 757 --T-MTL--TAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 757 --~-~~~--~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
. ..+ ..|...|.+++|+|++++||+++.||.|+||+
T Consensus 242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 1 223 46888999999999999999999999999995
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-31 Score=321.38 Aligned_cols=246 Identities=20% Similarity=0.324 Sum_probs=213.2
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl 583 (792)
....+.+|...|.|++|+++|++|++|+.||.|+|||+.++..+..+.+|...|++++|+|++++|++|+.|++|+|||+
T Consensus 422 ~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~ 501 (694)
T 3dm0_A 422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501 (694)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred ccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceeEEe---cccCCCeEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEE
Q 003840 584 DNPGYSLRTF---MGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA 656 (792)
Q Consensus 584 ~s~~~~i~~~---~~h~~~V~sl~fspd~~-~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s 656 (792)
.. ....... .+|...|.+++|+|++. .++++++.|+.|++||++++++...+.+ .+.+++|+|++..+++++
T Consensus 502 ~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 502 LG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp TS-CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CC-CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 65 2222222 46889999999999863 4788999999999999999988877654 578899999999999999
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecC--------------
Q 003840 657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCN-------------- 722 (792)
Q Consensus 657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~-------------- 722 (792)
.|+.|++||+++++.+..+.. ...|.+++|+|++.+|++++++.|+|||++++ ..+..+..+
T Consensus 581 ~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 656 (694)
T 3dm0_A 581 KDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESK---SIVEDLKVDLKAEAEKADNSGPA 656 (694)
T ss_dssp TTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTT---EEEEEECCCCC------------
T ss_pred CCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCC---CChhhhccccccccccccccccc
Confidence 999999999999998888764 56799999999999999988889999999876 444433321
Q ss_pred -----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 723 -----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 723 -----~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
...+.+++|+|++++|++|+.||.|+|||+..
T Consensus 657 ~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 657 ATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp ----CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 12368899999999999999999999999853
No 83
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=297.45 Aligned_cols=247 Identities=16% Similarity=0.316 Sum_probs=212.2
Q ss_pred cCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCCCc-eeEEeccCCCCEEEEEE------CCCCCeEEEEeCCCcEE
Q 003840 510 ASTSKVICCHFSSD---GKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRF------SPSMPRLATSSFDKTVR 579 (792)
Q Consensus 510 ~H~~~V~~lafspd---g~~Lasgs~Dg~I~vWdl~t~~-~~~~l~~h~~~V~~i~f------spdg~~Lasgs~Dg~V~ 579 (792)
+|...|.+++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|...|.+++| ++++++|++++.||.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 68889999999998 7999999999999999999988 88999999999999954 78999999999999999
Q ss_pred EEeCCCCCceeEEecccCC----CeEEEE----EcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--eCCeeEEEEec--
Q 003840 580 VWDADNPGYSLRTFMGHSA----SVMSLD----FHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQP-- 647 (792)
Q Consensus 580 IWdl~s~~~~i~~~~~h~~----~V~sl~----fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp-- 647 (792)
+||+++....+..+..|.+ .|.+++ |++++. ++++++.||.|++||+++++..... ...+.+++|+|
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSS
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCC
Confidence 9999985557777766555 899998 667765 6668999999999999999876543 46788999999
Q ss_pred -CCCEEEEEEcCCeEEEEECCCCeEEEE-----ecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCc------
Q 003840 648 -HLGRYLAAAAENVVSILDAETQACRLS-----LQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEG------ 713 (792)
Q Consensus 648 -~~~~lla~s~dg~I~i~D~~t~~~~~~-----l~~h~~~V~sv~~spdg~-~Las~s~d-~I~IwDl~s~~~~------ 713 (792)
++..+++++.|+.|++||+++++.+.. +.+|...|++++|+|++. +|++++.| .|++||++.+...
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 899999999999999999987654433 348999999999999998 89999998 9999999865433
Q ss_pred ----------ceEEEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCcE
Q 003840 714 ----------ECVHELSCNGNKFHSCVFHPTYPSLL-VIGCYQSLELWNMSENKT 757 (792)
Q Consensus 714 ----------~~i~~~~~~~~~i~si~fspdg~~L~-sgs~dg~I~IwDl~~~~~ 757 (792)
..+..+..|...|.+++|+|++++|+ +++.|+.|+|||+.+.+.
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 46788889999999999999999998 799999999999987654
No 84
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.1e-32 Score=299.84 Aligned_cols=248 Identities=17% Similarity=0.197 Sum_probs=219.2
Q ss_pred eeeeeeecCCCCeEEEEEcCC----C---CEEEEEeCCCeEEEEECCCCce-----eEEeccC-----CCCEEEEEEC--
Q 003840 503 KEANSVRASTSKVICCHFSSD----G---KLLATGGHDKKAVLWHTDTLKS-----KTNLEEH-----SSLITDVRFS-- 563 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspd----g---~~Lasgs~Dg~I~vWdl~t~~~-----~~~l~~h-----~~~V~~i~fs-- 563 (792)
..+..+.+|...|++++|+++ + ++|++++.||.|++||+.+++. +..+..| ...|.+++|+
T Consensus 53 ~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 132 (397)
T 1sq9_A 53 DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 132 (397)
T ss_dssp GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECC
T ss_pred CcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeec
Confidence 345667799999999999999 9 9999999999999999998887 8888888 5999999999
Q ss_pred --CCCCe-EEEEeCCCcEEEEeCCC------CCceeE-----Ee-------cccCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003840 564 --PSMPR-LATSSFDKTVRVWDADN------PGYSLR-----TF-------MGHSASVMSLDFHPNKDDLICSCDGDGEI 622 (792)
Q Consensus 564 --pdg~~-Lasgs~Dg~V~IWdl~s------~~~~i~-----~~-------~~h~~~V~sl~fspd~~~ll~sgs~Dg~I 622 (792)
|++++ |++++.||.|++||+.+ .. .+. .+ ..|...|.+++|+|++ +|++++.||.|
T Consensus 133 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i 209 (397)
T 1sq9_A 133 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSL-TLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTV 209 (397)
T ss_dssp C----CEEEEEEETTSCEEEEEEESSSSHHHHT-TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEE
T ss_pred cCCCCceEEEEEeCCCcEEEEeCCccccccccc-eeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcE
Confidence 99999 99999999999999986 32 222 45 4588999999999997 77799999999
Q ss_pred EEEEcCCCeeEEEeeC---------CeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEecC-------------
Q 003840 623 RYWSINNGSCTRVFKG---------GTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACRLSLQG------------- 677 (792)
Q Consensus 623 ~iwdl~~~~~~~~~~~---------~~~~v~~sp~~~~lla~s~d---g~I~i~D~~t~~~~~~l~~------------- 677 (792)
++||+++++.+..+.. .+.+++|+|++..+++++.| +.|++||+++++.+..+..
T Consensus 210 ~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (397)
T 1sq9_A 210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 289 (397)
T ss_dssp EEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred EEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccc
Confidence 9999999998877654 47789999999999999999 9999999999999999998
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee------cC---------------CCceEEEEEeCCC
Q 003840 678 HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS------CN---------------GNKFHSCVFHPTY 735 (792)
Q Consensus 678 h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~------~~---------------~~~i~si~fspdg 735 (792)
|...|.+++|+|++++|++++.| .|+|||++++ +++..+. .| ...|.+++|+|++
T Consensus 290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence 99999999999999999999998 9999999876 6777777 66 8899999999998
Q ss_pred ----------CEEEEEEcCCeEEEEECCCCc
Q 003840 736 ----------PSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 736 ----------~~L~sgs~dg~I~IwDl~~~~ 756 (792)
++|++++.||.|+|||+.+++
T Consensus 367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 367 WRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 799999999999999998763
No 85
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-31 Score=287.98 Aligned_cols=275 Identities=13% Similarity=0.219 Sum_probs=238.9
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...+.|++||.++++++.+ +|||+.+++ .+.
T Consensus 35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----------------------------------------------~~~ 68 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGE----------------------------------------------RLG 68 (369)
T ss_dssp EEEEEECTTSCEEEEEESSSCEEEEETTTCC----------------------------------------------EEE
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCCCch----------------------------------------------hhh
Confidence 4568899999988875433 778766543 344
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC-----CcEEEE
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVW 581 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D-----g~V~IW 581 (792)
.+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+. +...|.+++|+|++++|++++.+ |.|++|
T Consensus 69 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~ 147 (369)
T 3zwl_B 69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147 (369)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence 567899999999999999999999999999999999999998888 88999999999999999999999 999999
Q ss_pred eCCCCCc----------eeEEecccCC--CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEEee---CCeeEEEE
Q 003840 582 DADNPGY----------SLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFK---GGTAQMRF 645 (792)
Q Consensus 582 dl~s~~~----------~i~~~~~h~~--~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~~~---~~~~~v~~ 645 (792)
|+..... .+..+..|.. .|.+++|+|++. +|++++.||.|++||+++ ...+..+. ..+.+++|
T Consensus 148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 226 (369)
T 3zwl_B 148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQF 226 (369)
T ss_dssp EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEE
T ss_pred EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEE
Confidence 9986432 3445556666 999999999976 556899999999999998 67776665 46788999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---------------eEEEEECCCC
Q 003840 646 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---------------SVRVWTVGSG 710 (792)
Q Consensus 646 sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---------------~I~IwDl~s~ 710 (792)
+|++..+++++.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.+ .|++||+.++
T Consensus 227 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 227 SPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred CCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence 9999999999999999999999999988887 77889999999999999998865 5899999776
Q ss_pred CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003840 711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 711 ~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~ 756 (792)
..+..+..|...|.+++|+|++++|++++.||.|+||++.++.
T Consensus 306 ---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 306 ---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp ---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred ---cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 6778888999999999999999999999999999999998654
No 86
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.5e-32 Score=296.13 Aligned_cols=282 Identities=17% Similarity=0.244 Sum_probs=233.5
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...+.|++||.++++++.+ +|||+.+++ ++.+.
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~--------------------------------------------~~~~~ 46 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--------------------------------------------WVQVH 46 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTE--------------------------------------------EEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCc--------------------------------------------EEeee
Confidence 4578999999998876444 677765432 23556
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE--eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~--l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~ 584 (792)
.+.+|...|.+++|+|++++|++++.||.|++||+++++.... +..|...|++++|+|++++|++++.||.|++||++
T Consensus 47 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~ 126 (372)
T 1k8k_C 47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 126 (372)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEec
Confidence 7789999999999999999999999999999999998875544 46799999999999999999999999999999998
Q ss_pred CCCc---eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC------------------CCeeEEEee---CCe
Q 003840 585 NPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN------------------NGSCTRVFK---GGT 640 (792)
Q Consensus 585 s~~~---~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~------------------~~~~~~~~~---~~~ 640 (792)
.... .......|...|.+++|+|++. +|++++.||.|++||++ .++++..+. ..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 205 (372)
T 1k8k_C 127 QENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 205 (372)
T ss_dssp TTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred CCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE
Confidence 7442 2334467899999999999876 56689999999999954 567777664 457
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCC--CC-------
Q 003840 641 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS--GS------- 711 (792)
Q Consensus 641 ~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s--~~------- 711 (792)
.+++|+|++..+++++.|+.|++||+++++.+..+..|...|.+++|+|++.+|+++.++.|++||+.. +.
T Consensus 206 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 206 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeecc
Confidence 889999999999999999999999999999999999999999999999999999988444999999987 21
Q ss_pred ----------------------CcceE------EEe-ecCCCceEEEEEe-CCC---CEEEEEEcCCeEEEEECCCCc
Q 003840 712 ----------------------EGECV------HEL-SCNGNKFHSCVFH-PTY---PSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 712 ----------------------~~~~i------~~~-~~~~~~i~si~fs-pdg---~~L~sgs~dg~I~IwDl~~~~ 756 (792)
..... ..+ .+|...|.+++|+ +++ .+|++++.||.|++||+.+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 286 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred CccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 00110 222 3788899999866 666 899999999999999987643
No 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.2e-32 Score=297.15 Aligned_cols=241 Identities=18% Similarity=0.279 Sum_probs=211.5
Q ss_pred cCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCC
Q 003840 510 ASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 510 ~H~~~V~~lafspd----g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~ 584 (792)
.|...|++++|+++ |++|++|+.||.|+|||+.+++.+..+.+|...|++++|+| ++.+|++++.||.|+|||++
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 47788999999999 67999999999999999999999999999999999999999 89999999999999999998
Q ss_pred CCCceeEEe---cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE--------------------------
Q 003840 585 NPGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-------------------------- 635 (792)
Q Consensus 585 s~~~~i~~~---~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~-------------------------- 635 (792)
+ +..+..+ ..|...|.+++|+|++. +|++++.||.|++||+++++....
T Consensus 147 ~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 147 T-DTLVAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp T-TEEEEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred c-CeEEEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence 7 5667776 68999999999999876 566899999999999997754322
Q ss_pred -----eeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--------------EEEEecCCCCCeEEEEEcCC--CCEE
Q 003840 636 -----FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA--------------CRLSLQGHTKPIDSVCWDPS--GELL 694 (792)
Q Consensus 636 -----~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~--------------~~~~l~~h~~~V~sv~~spd--g~~L 694 (792)
....+.+++|+ +..+++++.|+.|++||+++.. .+..+..|...|++++|+|+ +++|
T Consensus 225 ~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l 302 (366)
T 3k26_A 225 STRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML 302 (366)
T ss_dssp EECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEE
T ss_pred ccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEE
Confidence 34567788888 6799999999999999998763 47888889999999999999 9999
Q ss_pred EEEeCC-eEEEEECCCCCCcc-eEEEeecC--CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 695 ASVSED-SVRVWTVGSGSEGE-CVHELSCN--GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 695 as~s~d-~I~IwDl~s~~~~~-~i~~~~~~--~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
++++.| .|++||+.++.... .+..+..| ...|.+++|+|++++|++++.||.|+|||+.+
T Consensus 303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 303 ALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999998 99999998875433 55566766 68999999999999999999999999999853
No 88
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.9e-31 Score=283.17 Aligned_cols=291 Identities=18% Similarity=0.304 Sum_probs=239.5
Q ss_pred CCCCceeccCCCCCCCCCcceEEEEeCCCeeee--cCCCeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCC
Q 003840 412 TPGDVISMPALPHSGTTSKPLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDA 489 (792)
Q Consensus 412 tp~~~~~~p~~p~~~~~~k~~l~~s~Dg~~~~s--s~s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~ 489 (792)
.|.+++.+|.+...-. ..+|.||+++. +++ +++.+|||+.+++.+.
T Consensus 12 ~p~rvldap~~~~d~y--~~~l~WS~~~~-lAvg~D~tV~iWd~~tg~~~~----------------------------- 59 (318)
T 4ggc_A 12 LPDRILDAPEIRNDYY--LNLVDWSSGNV-LAVALDNSVYLWSASSGDILQ----------------------------- 59 (318)
T ss_dssp SCSEEEECTTCCCCTT--CBCEEECTTSE-EEEEETTEEEEEETTTCCEEE-----------------------------
T ss_pred CCCEEeeCCCCccccc--ceEEEECCCCE-EEEEeCCEEEEEECCCCCEEE-----------------------------
Confidence 4566777777653211 24789999873 433 3334889988876432
Q ss_pred CCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeE
Q 003840 490 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 569 (792)
Q Consensus 490 ~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~L 569 (792)
...+.+|...|+|++|+|++++||+|+.||+|+|||+++++.+..+.+|...+.++.+ ++.+|
T Consensus 60 ---------------~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l 122 (318)
T 4ggc_A 60 ---------------LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYIL 122 (318)
T ss_dssp ---------------EEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEE
T ss_pred ---------------EEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEE
Confidence 2234578889999999999999999999999999999999999999999999887766 45699
Q ss_pred EEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-------EeeCCeeE
Q 003840 570 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-------VFKGGTAQ 642 (792)
Q Consensus 570 asgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~-------~~~~~~~~ 642 (792)
++++.++.+++|+.......+..+.+|...+.++.|.+++. ++++++.|+.|++||+++++... .....+..
T Consensus 123 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 201 (318)
T 4ggc_A 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201 (318)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEE
T ss_pred EEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCcccccceeeecccCCceEE
Confidence 99999999999999987788889999999999999999976 56699999999999998765321 12346778
Q ss_pred EEEecCCCEEEE---EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe--CC-eEEEEECCCCCCcceE
Q 003840 643 MRFQPHLGRYLA---AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECV 716 (792)
Q Consensus 643 v~~sp~~~~lla---~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s--~d-~I~IwDl~s~~~~~~i 716 (792)
+.+.+.+..++. ++.++.|++||.+......... +...+..++|++++..+++++ .| .|+|||++++ +++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---~~~ 277 (318)
T 4ggc_A 202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---AKV 277 (318)
T ss_dssp EEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---CEE
T ss_pred EEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---cEE
Confidence 889988776553 3457899999999988776655 667899999999999887765 55 8999999876 788
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003840 717 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 717 ~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~ 756 (792)
..+.+|...|++++|+|++++|++++.|++|+|||+.+..
T Consensus 278 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 8999999999999999999999999999999999997653
No 89
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.9e-32 Score=301.61 Aligned_cols=277 Identities=15% Similarity=0.242 Sum_probs=233.7
Q ss_pred CCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCC----ceeEEeccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCC
Q 003840 513 SKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 513 ~~V~~lafspdg~~L-asgs~Dg~I~vWdl~t~----~~~~~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
....+++++++...+ ++++.||.|+||++... ..+..+.+|...|++++|+| ++.+|++|+.||.|+|||+.+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 345568899887544 45788999999999654 34556788999999999999 8999999999999999999874
Q ss_pred C------ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--e---CCeeEEEEecCCCEEEEE
Q 003840 587 G------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--K---GGTAQMRFQPHLGRYLAA 655 (792)
Q Consensus 587 ~------~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~---~~~~~v~~sp~~~~lla~ 655 (792)
. ..+..+.+|...|.+++|+|++..+|++++.||.|++||+++++++..+ . ..+.+++|+|++..++++
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 3 5678889999999999999998778889999999999999999988877 3 457889999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEe-cCCCCC-eEEEEEcCCCCEEEEE---eCC-eEEEEECCCCCCcceEEEeecCCCceEEE
Q 003840 656 AAENVVSILDAETQACRLSL-QGHTKP-IDSVCWDPSGELLASV---SED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 729 (792)
Q Consensus 656 s~dg~I~i~D~~t~~~~~~l-~~h~~~-V~sv~~spdg~~Las~---s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si 729 (792)
+.|+.|++||+++++.+..+ ..|... +.+++|+|++++|+++ +.| .|++||+++.........+ .+...+.++
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~ 273 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLP 273 (402)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEE
T ss_pred ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEE
Confidence 99999999999999999988 678776 8999999999999998 567 9999999886543333322 456679999
Q ss_pred EEeCCCCEEEEEE-cCCeEEEEECCCCc--EEEEc--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 730 VFHPTYPSLLVIG-CYQSLELWNMSENK--TMTLT--AHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 730 ~fspdg~~L~sgs-~dg~I~IwDl~~~~--~~~~~--~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+|+|++.+|++++ .|+.|++||+.+++ ...+. .|...|.+++|+|++.++++ .|+.+++|+
T Consensus 274 ~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 274 FFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred EEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 9999999997655 69999999999887 33333 36699999999999988764 577899995
No 90
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=293.82 Aligned_cols=207 Identities=19% Similarity=0.267 Sum_probs=175.5
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADN 585 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s 585 (792)
.+.+|.+.|+||+|+|||++||+|+.|++|+|||+.+++++..+.+|...|++++|++++. +|++++.|++|+|||+++
T Consensus 122 ~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~ 201 (344)
T 4gqb_B 122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC 201 (344)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS
T ss_pred cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc
Confidence 4568999999999999999999999999999999999999999999999999999999885 789999999999999997
Q ss_pred CCceeEEec--ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003840 586 PGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI 663 (792)
Q Consensus 586 ~~~~i~~~~--~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i 663 (792)
+..+..+. .+...+.+++|+|++..+|++|+.||.|++||+++++++
T Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~------------------------------ 250 (344)
T 4gqb_B 202 -PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV------------------------------ 250 (344)
T ss_dssp -SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC------------------------------
T ss_pred -cceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE------------------------------
Confidence 55555543 456678999999988888889998998888888765433
Q ss_pred EECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEE
Q 003840 664 LDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLV 740 (792)
Q Consensus 664 ~D~~t~~~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-~L~s 740 (792)
..+.+|...|++++|+|++ ++|++++.| .|+|||++++ + +..+.+|...|++++|+|+++ +|++
T Consensus 251 ---------~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 251 ---------LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRDFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp ---------EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred ---------EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCCCEEEEEEeCCCCeEEEE
Confidence 3455688999999999998 589999999 9999999875 3 345788999999999999986 5668
Q ss_pred EEcCCeEEEEECCCCcE
Q 003840 741 IGCYQSLELWNMSENKT 757 (792)
Q Consensus 741 gs~dg~I~IwDl~~~~~ 757 (792)
++.|++|++|++.+...
T Consensus 318 ~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 318 VGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EETTSCEEEEECCC---
T ss_pred EcCCCeEEEEECCCCCC
Confidence 89999999999987543
No 91
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-31 Score=280.07 Aligned_cols=242 Identities=17% Similarity=0.268 Sum_probs=211.2
Q ss_pred eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~---~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
...+..|...|.+++|+|++++|++|+.||.|++|++... +.+..+..|...|.+++| ++++|++++.||.|++|
T Consensus 52 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~ 129 (313)
T 3odt_A 52 GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVW 129 (313)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEE
Confidence 3456688999999999999999999999999999998754 567788899999999999 67799999999999999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----eCCeeEEEEecCCCEEEEEEc
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~sp~~~~lla~s~ 657 (792)
| ....+..+..|...|.+++|.+....++++++.||.|++||. .+....+ ...+.+++|++++. +++++.
T Consensus 130 d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~ 203 (313)
T 3odt_A 130 K---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN 203 (313)
T ss_dssp E---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEET
T ss_pred c---CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccC
Confidence 9 256788888999999999999844557779999999999994 4444444 34678899999977 999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003840 658 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 736 (792)
Q Consensus 658 dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~ 736 (792)
|+.|++||+++++.+..+..|...|++++|+|++ .|++++.| .|++||++++ +.+..+..+...+.+++|+|++.
T Consensus 204 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 204 DGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG---SLKQVITLPAISIWSVDCMSNGD 279 (313)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC---CEEEEEECSSSCEEEEEECTTSC
T ss_pred CCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCC---ceeEEEeccCceEEEEEEccCCC
Confidence 9999999999999999999999999999999999 47777777 9999999876 67788888889999999999998
Q ss_pred EEEEEEcCCeEEEEECCCCcEEE
Q 003840 737 SLLVIGCYQSLELWNMSENKTMT 759 (792)
Q Consensus 737 ~L~sgs~dg~I~IwDl~~~~~~~ 759 (792)
+++++.||.|++||+.+++...
T Consensus 280 -~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 280 -IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp -EEEEETTSCEEEEESCGGGCCC
T ss_pred -EEEEeCCCcEEEEeCCCCceee
Confidence 6779999999999999887653
No 92
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-31 Score=295.04 Aligned_cols=272 Identities=16% Similarity=0.180 Sum_probs=219.0
Q ss_pred cceEEEEeCC-CeeeecCC---CeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003840 430 KPLMMFGTDG-AGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 505 (792)
Q Consensus 430 k~~l~~s~Dg-~~~~ss~s---~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~ 505 (792)
...+.|++++ .++++++. .+|||+.+++.. ..
T Consensus 76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------------------------------------~~ 111 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT--------------------------------------------SF 111 (383)
T ss_dssp EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE--------------------------------------------EE
T ss_pred EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc--------------------------------------------ee
Confidence 4468899998 77777543 388988765321 11
Q ss_pred eeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEecc---CCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 506 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEE---HSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 506 ~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~---h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
..+.+|...|.+++|+| ++++|++++.|+.|++||+.+ ..+..+.. |...|.+++|+|++++|++++.|+.|++|
T Consensus 112 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 190 (383)
T 3ei3_B 112 IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL 190 (383)
T ss_dssp ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEE
Confidence 22347999999999999 789999999999999999996 55555544 44889999999999999999999999999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC----CeeEEEe--eCCeeEEEEec-CCCEEEE
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----GSCTRVF--KGGTAQMRFQP-HLGRYLA 654 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~----~~~~~~~--~~~~~~v~~sp-~~~~lla 654 (792)
|++ +..+..+.+|...|.+++|+|++..+|++|+.|+.|++||+++ +.++..+ ...+.+++|+| ++..+++
T Consensus 191 d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~ 268 (383)
T 3ei3_B 191 GLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLT 268 (383)
T ss_dssp ETT--SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEE
T ss_pred ECC--CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEE
Confidence 994 5788889999999999999999887888999999999999998 5565544 45688899999 9999999
Q ss_pred EEcCCeEEEEECCCCeEEEEecCCC-------CC----------eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceE
Q 003840 655 AAAENVVSILDAETQACRLSLQGHT-------KP----------IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 716 (792)
Q Consensus 655 ~s~dg~I~i~D~~t~~~~~~l~~h~-------~~----------V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i 716 (792)
++.|+.|++||+++++.+..+..|. .. +..++|+|++++ +++.| .|+|||+.++ +++
T Consensus 269 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~---~~~ 343 (383)
T 3ei3_B 269 TDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG---GLV 343 (383)
T ss_dssp EESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC---CEE
T ss_pred EcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC---cee
Confidence 9999999999999887655555432 23 334555555555 45566 9999999876 667
Q ss_pred EEeec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 717 HELSC--NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 717 ~~~~~--~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
..+.. +...+..++|+|++++|++++ |+.|+|||+++
T Consensus 344 ~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 344 HQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 77766 456677789999999999997 89999999875
No 93
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-32 Score=302.71 Aligned_cols=278 Identities=15% Similarity=0.204 Sum_probs=216.5
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...+.|+|||.++++++.+ +|||+.++. ++.+.
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--------------------------------------------~~~~~ 49 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNG--------------------------------------------WKHAR 49 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTE--------------------------------------------EEECC
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCc--------------------------------------------eEEEE
Confidence 4568899999988876444 777765432 12345
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~---~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl 583 (792)
.+.+|.+.|++++|+|++++|++|+.|+.|+|||+.+++ ....+..|...|++++|+|++++|++++.|+.|++||+
T Consensus 50 ~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 129 (377)
T 3dwl_C 50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYF 129 (377)
T ss_dssp CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC
T ss_pred EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEE
Confidence 567899999999999999999999999999999999877 67778899999999999999999999999999999999
Q ss_pred CCCCc--eeEEecc-cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC------------------CeeEEEe--eCCe
Q 003840 584 DNPGY--SLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN------------------GSCTRVF--KGGT 640 (792)
Q Consensus 584 ~s~~~--~i~~~~~-h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~------------------~~~~~~~--~~~~ 640 (792)
++... ....+.. |...|.+++|+|++. +|++++.|+.|++||++. ++++..+ ...+
T Consensus 130 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 208 (377)
T 3dwl_C 130 EQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWV 208 (377)
T ss_dssp -----CCCCEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSE
T ss_pred CCcccceeeeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceE
Confidence 87432 4677777 999999999999875 667999999999999953 3344433 3457
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeE----EEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCC----
Q 003840 641 AQMRFQPHLGRYLAAAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE---- 712 (792)
Q Consensus 641 ~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~----~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~---- 712 (792)
.+++|+|++.++++++.|+.|++||+++++. +..+.+|...|.+++|+|++++|++++++.+.+|+......
T Consensus 209 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 288 (377)
T 3dwl_C 209 HAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTR 288 (377)
T ss_dssp EEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSB
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEe
Confidence 8899999999999999999999999999876 77888999999999999999999999988666887752210
Q ss_pred -----------------------c---------ceEEE-------------eecCCCceEEEEEeCCC-C---EEEEEEc
Q 003840 713 -----------------------G---------ECVHE-------------LSCNGNKFHSCVFHPTY-P---SLLVIGC 743 (792)
Q Consensus 713 -----------------------~---------~~i~~-------------~~~~~~~i~si~fspdg-~---~L~sgs~ 743 (792)
. ..+.. ...|...|.++++.+.. . .|++++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~ 368 (377)
T 3dwl_C 289 DLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGT 368 (377)
T ss_dssp CCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEET
T ss_pred eecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecC
Confidence 0 00110 11278889999976644 3 6999999
Q ss_pred CCeEEEEEC
Q 003840 744 YQSLELWNM 752 (792)
Q Consensus 744 dg~I~IwDl 752 (792)
||.|+|||+
T Consensus 369 Dg~i~iWdl 377 (377)
T 3dwl_C 369 DGRVVLWTL 377 (377)
T ss_dssp TSEEEEECC
T ss_pred CCcEEEecC
Confidence 999999985
No 94
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.3e-31 Score=290.70 Aligned_cols=323 Identities=16% Similarity=0.234 Sum_probs=228.0
Q ss_pred cceEEEEe-CCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003840 430 KPLMMFGT-DGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 505 (792)
Q Consensus 430 k~~l~~s~-Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~ 505 (792)
...+.|+| ++.++++++.+ +|||+.+++....+..... .....
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---------------------------------~~~~~ 92 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV---------------------------------CSIGR 92 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE---------------------------------EEECT
T ss_pred EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc---------------------------------ccccc
Confidence 45688999 99998886544 8899988764432210000 00001
Q ss_pred eeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCC---CCeEEEEeCCCcEEEE
Q 003840 506 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS---MPRLATSSFDKTVRVW 581 (792)
Q Consensus 506 ~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspd---g~~Lasgs~Dg~V~IW 581 (792)
....+|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+. +...+.++.|++. +.+|++++.||.|++|
T Consensus 93 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (408)
T 4a11_B 93 DHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171 (408)
T ss_dssp TCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred cccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence 11346999999999999 78899999999999999999998888776 7788999999985 4499999999999999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEE------------------eeCCeeE
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRV------------------FKGGTAQ 642 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~~~~------------------~~~~~~~ 642 (792)
|+++ +..+..+..|...|.+++|+|++.++|++++.||.|++||++++. ++.. ....+.+
T Consensus 172 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 250 (408)
T 4a11_B 172 DLKS-GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG 250 (408)
T ss_dssp ESSS-SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred eCCC-cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence 9987 677888889999999999999998888899999999999998765 2222 2345788
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC------CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceE
Q 003840 643 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT------KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECV 716 (792)
Q Consensus 643 v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~------~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i 716 (792)
++|+|++.++++++.|+.|++||+++++....+..+. .....+.....+.+++++.++.|++||+.++ ..+
T Consensus 251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~ 327 (408)
T 4a11_B 251 LCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQI 327 (408)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEE
T ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cce
Confidence 9999999999999999999999999987655443321 1122233333445555555559999999876 788
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeC-CCCEEEEEeCCCcEEEeC
Q 003840 717 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK 792 (792)
Q Consensus 717 ~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fsp-dg~~LaSgs~DG~I~IWd 792 (792)
..+..|...|.+++|+|++.+|++++.||.|++||+.+++.+......... ..+.+ ....+.+++.|+.|++|+
T Consensus 328 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 328 TMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------
T ss_pred eeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--cccccccceeecccCccCceeecC
Confidence 888999999999999999999999999999999999998876432222222 22333 334566777899999995
No 95
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.3e-30 Score=286.32 Aligned_cols=275 Identities=15% Similarity=0.186 Sum_probs=216.3
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeE-EEEeCCCcEEEEe
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWD 582 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~L-asgs~Dg~V~IWd 582 (792)
.+..+..|.+.|+|++|+|||++||+|+.++ ++|||+++++.+.....+ .+..++|.++++.+ ++++.|++|+|||
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 3445688999999999999999999998775 789999987766554433 57888999988877 5678889999999
Q ss_pred CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeEEEeeCCeeEEEEecCCCEEEEE--EcCC
Q 003840 583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGGTAQMRFQPHLGRYLAA--AAEN 659 (792)
Q Consensus 583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~~~~~~v~~sp~~~~lla~--s~dg 659 (792)
+.+ +..+..+. +...|.+++|+++. ++ ++ .|+.|++||+.++ +.+..+......+++++ ..++++ +.+|
T Consensus 88 ~~~-~~~~~~~~-~~~~v~~v~~~~~~--~~-~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g 159 (355)
T 3vu4_A 88 DVK-KQDVSRIK-VDAPVKDLFLSREF--IV-VS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLG 159 (355)
T ss_dssp TTT-TEEEEEEE-CSSCEEEEEECSSE--EE-EE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTT
T ss_pred CCC-CcEEEEEE-CCCceEEEEEcCCE--EE-EE-EcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCc
Confidence 987 66666665 67799999998762 33 33 3889999999988 66666555445566777 566664 6799
Q ss_pred eEEEEECCCCe----------------EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-e-EEEEECCCCCCcceEEEee-
Q 003840 660 VVSILDAETQA----------------CRLSLQGHTKPIDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELS- 720 (792)
Q Consensus 660 ~I~i~D~~t~~----------------~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~-I~IwDl~s~~~~~~i~~~~- 720 (792)
.|++||++++. ++..+.+|...|++++|+|+|++|++++.| + |+|||++++ .++..+.
T Consensus 160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~~ 236 (355)
T 3vu4_A 160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFRR 236 (355)
T ss_dssp CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---CEEEEEEC
T ss_pred EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEc
Confidence 99999999865 267889999999999999999999999999 7 999999877 6777787
Q ss_pred c-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---EE--------------------c-ccCCCeEEEEEeCC
Q 003840 721 C-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TL--------------------T-AHEGLIAALAVSTE 775 (792)
Q Consensus 721 ~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~---~~--------------------~-~h~~~V~sl~fspd 775 (792)
+ |...|.+++|+|++++|++++.|+.|+|||+...... .+ . .+......++|++|
T Consensus 237 g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d 316 (355)
T 3vu4_A 237 GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE 316 (355)
T ss_dssp TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS
T ss_pred CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCC
Confidence 4 8899999999999999999999999999999765311 10 0 11223467999999
Q ss_pred CCEEEEEeCCCcEEEeC
Q 003840 776 TGYVASASHDKFVKLWK 792 (792)
Q Consensus 776 g~~LaSgs~DG~I~IWd 792 (792)
+++|++++.||.+++|+
T Consensus 317 ~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 317 SSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCeEEEEE
Confidence 99999999999999985
No 96
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.98 E-value=1.5e-31 Score=301.70 Aligned_cols=246 Identities=15% Similarity=0.202 Sum_probs=199.1
Q ss_pred eeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEecc--CCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003840 506 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 506 ~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~--h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd 582 (792)
..+.+|.+.|+||+|+| ++++|++|+.||+|+|||+++......... +...+.+++|++++.+|++|+.||.|++||
T Consensus 158 ~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd 237 (435)
T 4e54_B 158 IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLN 237 (435)
T ss_dssp ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEE
T ss_pred EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeec
Confidence 34568999999999998 789999999999999999987655444433 345678999999999999999999999999
Q ss_pred CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE------eeCCeeEEEEecCCCEEEEEE
Q 003840 583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------FKGGTAQMRFQPHLGRYLAAA 656 (792)
Q Consensus 583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~------~~~~~~~v~~sp~~~~lla~s 656 (792)
++. ..+..+.+|...|++|+|+|++..+|++|+.|+.|++||+++.+.... +...+.+++|+|++.+|++++
T Consensus 238 ~~~--~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~ 315 (435)
T 4e54_B 238 MDG--KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD 315 (435)
T ss_dssp SSS--CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred cCc--ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence 974 567778899999999999999998999999999999999988764433 234678899999999999999
Q ss_pred cCCeEEEEECCCCeEEEEecCCCC------CeEEEEEcCCCCEEEEEe------------CC-eEEEEECCCCCCcceEE
Q 003840 657 AENVVSILDAETQACRLSLQGHTK------PIDSVCWDPSGELLASVS------------ED-SVRVWTVGSGSEGECVH 717 (792)
Q Consensus 657 ~dg~I~i~D~~t~~~~~~l~~h~~------~V~sv~~spdg~~Las~s------------~d-~I~IwDl~s~~~~~~i~ 717 (792)
.|+.|+|||++++.+...+..|.. .+..+.|++++.+++++. ++ .|++||+.++ ..+.
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---~~~~ 392 (435)
T 4e54_B 316 QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---KMMC 392 (435)
T ss_dssp SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---CEEE
T ss_pred CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---cEEE
Confidence 999999999999988777766543 233456777777776654 23 6999999877 5555
Q ss_pred Ee-ecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 003840 718 EL-SCNGNKFHSC-VFHPTYPSLLVIGCYQSLELWNMSENKT 757 (792)
Q Consensus 718 ~~-~~~~~~i~si-~fspdg~~L~sgs~dg~I~IwDl~~~~~ 757 (792)
.+ ..|...|.++ +|+|++.+|++|+ |+.|+|||+++++.
T Consensus 393 ~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 393 QLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 54 3566777776 6999999888765 78999999998764
No 97
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=4.9e-30 Score=287.19 Aligned_cols=285 Identities=9% Similarity=0.058 Sum_probs=241.8
Q ss_pred ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE-----EeccCCCCEEEEEECCCCCeEEEEeCC
Q 003840 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-----NLEEHSSLITDVRFSPSMPRLATSSFD 575 (792)
Q Consensus 501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~-----~l~~h~~~V~~i~fspdg~~Lasgs~D 575 (792)
.++.+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++.+. .+.+|...|.+++|++++.++++++.|
T Consensus 112 ~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 190 (433)
T 3bws_A 112 THRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA 190 (433)
T ss_dssp SEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred cceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence 445666666654 46699999988888888889999999999998887 445789999999999999999999999
Q ss_pred CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEE
Q 003840 576 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYL 653 (792)
Q Consensus 576 g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll 653 (792)
+.|++||+++ +..+..+..|...+.+++|+|++..++++++.|+.|++||+++++.+..+.. .+..++|+|+++.++
T Consensus 191 ~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 269 (433)
T 3bws_A 191 NAVHVFDLKT-LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELY 269 (433)
T ss_dssp TEEEEEETTT-CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEE
T ss_pred CEEEEEECCC-ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEE
Confidence 9999999987 6677788889999999999999998888888899999999999998877653 467789999999999
Q ss_pred EEE--------cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEE-EEEeCC-eEEEEECCCCCCcceEEEeecCC
Q 003840 654 AAA--------AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL-ASVSED-SVRVWTVGSGSEGECVHELSCNG 723 (792)
Q Consensus 654 a~s--------~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~L-as~s~d-~I~IwDl~s~~~~~~i~~~~~~~ 723 (792)
+++ .|+.|++||+++++.+..+. |...+.+++|+|+++++ ++++.+ .|++||+.++ +.+..+. +.
T Consensus 270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---~~~~~~~-~~ 344 (433)
T 3bws_A 270 IAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---KVQKSIP-VF 344 (433)
T ss_dssp EEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---EEEEEEE-CS
T ss_pred EEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---cEEEEec-CC
Confidence 888 48899999999998777653 55688999999999855 555666 9999999865 4555554 56
Q ss_pred CceEEEEEeCCCCEEEEEEc---------------CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC-CCc
Q 003840 724 NKFHSCVFHPTYPSLLVIGC---------------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH-DKF 787 (792)
Q Consensus 724 ~~i~si~fspdg~~L~sgs~---------------dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~-DG~ 787 (792)
..+.+++|+|++++|++++. ||.|++||+.+++.+....+...+.+++|+|++++|++++. |+.
T Consensus 345 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~ 424 (433)
T 3bws_A 345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQ 424 (433)
T ss_dssp SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTE
T ss_pred CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCe
Confidence 77999999999999998887 46999999999998865555678999999999999998875 999
Q ss_pred EEEeC
Q 003840 788 VKLWK 792 (792)
Q Consensus 788 I~IWd 792 (792)
|+||+
T Consensus 425 i~v~~ 429 (433)
T 3bws_A 425 IRVYR 429 (433)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 98
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=3.7e-30 Score=289.88 Aligned_cols=285 Identities=20% Similarity=0.420 Sum_probs=225.1
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
..+.++..|+.++++++.+ ++||+.+++ ...
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~----------------------------------------------~~~ 167 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE----------------------------------------------CKR 167 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCC----------------------------------------------EEE
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCe----------------------------------------------EEE
Confidence 4566777788888775443 778876543 234
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
.+.+|.+.|+|++| ++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|++ .+|++|+.||.|++||+.+.
T Consensus 168 ~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 243 (435)
T 1p22_A 168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASP 243 (435)
T ss_dssp EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSS
T ss_pred EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCC
Confidence 56789999999999 788999999999999999999999999999999999999974 59999999999999999874
Q ss_pred Cce--eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCeE
Q 003840 587 GYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVV 661 (792)
Q Consensus 587 ~~~--i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~I 661 (792)
... ...+.+|...|.+++|. + .++++|+.||.|++||+++++++..+..+ +.++.+ ++..+++++.|+.|
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i 318 (435)
T 1p22_A 244 TDITLRRVLVGHRAAVNVVDFD--D-KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTI 318 (435)
T ss_dssp SCCEEEEEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCE
T ss_pred CCceeeeEecCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeE
Confidence 332 26778899999999993 3 46779999999999999999998887643 455555 56899999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC------cceEEEeecCCCceEEEEEeCC
Q 003840 662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------GECVHELSCNGNKFHSCVFHPT 734 (792)
Q Consensus 662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~------~~~i~~~~~~~~~i~si~fspd 734 (792)
++||+++++++..+.+|...|.+++| ++.+|++++.| .|++||+.++.. ..++..+..|...|.+++| +
T Consensus 319 ~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~ 394 (435)
T 1p22_A 319 RLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--D 394 (435)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--C
T ss_pred EEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--C
Confidence 99999999999999999999999998 78899999999 999999976532 1278888999999999999 7
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEe
Q 003840 735 YPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 773 (792)
Q Consensus 735 g~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fs 773 (792)
+.+|++++.||.|++||+.+...........++.++.|.
T Consensus 395 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 433 (435)
T 1p22_A 395 EFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYI 433 (435)
T ss_dssp SSCEEECCSSSEEEEEC----------------------
T ss_pred CCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeee
Confidence 888999999999999999887766444444455555554
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=7.8e-31 Score=294.32 Aligned_cols=287 Identities=13% Similarity=0.191 Sum_probs=225.1
Q ss_pred CcceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003840 429 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 505 (792)
Q Consensus 429 ~k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~ 505 (792)
....+.|+|||.++++++.+ +|||+.+++.... .....++..
T Consensus 30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~-----------------------------------~~~~~~~~~ 74 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS-----------------------------------HSRGEYNVY 74 (447)
T ss_dssp SEEEEEECSSSSEEEEEETTSEEEEEEECC-----C-----------------------------------CCCCCEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc-----------------------------------ccccceeEe
Confidence 34578999999999886554 8899887652210 012234566
Q ss_pred eeeecCC------------CCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCcee------------------------
Q 003840 506 NSVRAST------------SKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKSK------------------------ 547 (792)
Q Consensus 506 ~~l~~H~------------~~V~~lafspdg--~~Lasgs~Dg~I~vWdl~t~~~~------------------------ 547 (792)
..+.+|. +.|++++|+|++ .+|++++.|+.|+|||+.++...
T Consensus 75 ~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 154 (447)
T 3dw8_B 75 STFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRV 154 (447)
T ss_dssp EEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCC
T ss_pred cccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEe
Confidence 7788898 889999999998 79999999999999998764432
Q ss_pred ---------------EE-eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE-------EecccCCCeEEEE
Q 003840 548 ---------------TN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-------TFMGHSASVMSLD 604 (792)
Q Consensus 548 ---------------~~-l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~-------~~~~h~~~V~sl~ 604 (792)
.. +.+|...|++++|+|++++|++| .|+.|+|||+++....+. .+.+|...|++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 233 (447)
T 3dw8_B 155 PVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAE 233 (447)
T ss_dssp CEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEE
T ss_pred ccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEE
Confidence 12 36799999999999999999998 899999999985344444 2568999999999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCCee----EEEeeC---------------CeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003840 605 FHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKG---------------GTAQMRFQPHLGRYLAAAAENVVSILD 665 (792)
Q Consensus 605 fspd~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~~---------------~~~~v~~sp~~~~lla~s~dg~I~i~D 665 (792)
|+|++..+|++|+.||.|++||+++++. +..+.. .+.+++|+|++.++++++. +.|++||
T Consensus 234 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd 312 (447)
T 3dw8_B 234 FHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWD 312 (447)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEE
T ss_pred ECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEe
Confidence 9999856888999999999999999886 566543 6788999999999999888 9999999
Q ss_pred CCC-CeEEEEecCCCCC---------------eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE----------
Q 003840 666 AET-QACRLSLQGHTKP---------------IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE---------- 718 (792)
Q Consensus 666 ~~t-~~~~~~l~~h~~~---------------V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~---------- 718 (792)
+++ ++++..+.+|... +..++|+|++++|++++.| .|+|||+.++........
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 392 (447)
T 3dw8_B 313 LNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVL 392 (447)
T ss_dssp TTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBC
T ss_pred CCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccccccccc
Confidence 997 8888888877532 3349999999999999999 999999987632110000
Q ss_pred -------------------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003840 719 -------------------LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 753 (792)
Q Consensus 719 -------------------~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~ 753 (792)
.......|..++|+|++.+|++++.++ +++|..+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 393 KPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred CCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 002234688999999999998887765 8888754
No 100
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.8e-30 Score=286.34 Aligned_cols=240 Identities=13% Similarity=0.155 Sum_probs=192.1
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEe-----------CCCeEEEEECCCCceeEE----e-----ccCCCCEEEEEECCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGG-----------HDKKAVLWHTDTLKSKTN----L-----EEHSSLITDVRFSPSM 566 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs-----------~Dg~I~vWdl~t~~~~~~----l-----~~h~~~V~~i~fspdg 566 (792)
.+.+|.+.|.|++|+. +.+++|+ .|+.|++|++.+...... . ..+...+.+++|+|||
T Consensus 68 ~l~~~~~~v~s~~~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 4678888898887754 4676654 477899999876532221 1 1345679999999999
Q ss_pred CeEEEE--eCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-----eCC
Q 003840 567 PRLATS--SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGG 639 (792)
Q Consensus 567 ~~Lasg--s~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~ 639 (792)
++|+++ +.|++|+|||+.+ ...+..+. |...|.+|+|+|++. ++++++ ++.+++|+..++..+... ...
T Consensus 146 ~~la~as~~~d~~i~iwd~~~-~~~~~~~~-~~~~V~~v~fspdg~-~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSD-LTEKFEIE-TRGEVKDLHFSTDGK-VVAYIT-GSSLEVISTVTGSCIARKTDFDKNWS 221 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTT-TEEEEEEE-CSSCCCEEEECTTSS-EEEEEC-SSCEEEEETTTCCEEEEECCCCTTEE
T ss_pred CEEEEEECCCCCEEEEeECCC-CcEEEEeC-CCCceEEEEEccCCc-eEEecc-ceeEEEEEeccCcceeeeecCCCCCC
Confidence 997654 4789999999997 56666664 778899999999986 555776 566778887777765432 124
Q ss_pred eeEEEEecCCCEEEEEEcCC----eEEEEECCCCeE----EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003840 640 TAQMRFQPHLGRYLAAAAEN----VVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 710 (792)
Q Consensus 640 ~~~v~~sp~~~~lla~s~dg----~I~i~D~~t~~~----~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~ 710 (792)
+.+++|+|++..+++++.++ .+++||+..... ...+.+|...|++++|+|+|++||+|+.| .|+|||++++
T Consensus 222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~ 301 (365)
T 4h5i_A 222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL 301 (365)
T ss_dssp EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence 67799999999999998876 688899877643 35677899999999999999999999999 9999999876
Q ss_pred CCcceEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003840 711 SEGECVHEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 755 (792)
Q Consensus 711 ~~~~~i~~~-~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~ 755 (792)
+++..+ .+|...|++++|+||+++|++++.|++|+|||+..+
T Consensus 302 ---~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 302 ---SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ---EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ---cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 677764 689999999999999999999999999999999654
No 101
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-29 Score=287.75 Aligned_cols=270 Identities=14% Similarity=0.164 Sum_probs=220.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeEEecc-------------------------------------
Q 003840 513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEE------------------------------------- 552 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~---~~~~l~~------------------------------------- 552 (792)
.+|.|++|++||++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468999999999977666 57899999999998 5555543
Q ss_pred -----------------CCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCC--CCCceeEEec--ccCCCeEEEEEcCCCC
Q 003840 553 -----------------HSSLITDVRFSPSMPRL-ATSSFDKTVRVWDAD--NPGYSLRTFM--GHSASVMSLDFHPNKD 610 (792)
Q Consensus 553 -----------------h~~~V~~i~fspdg~~L-asgs~Dg~V~IWdl~--s~~~~i~~~~--~h~~~V~sl~fspd~~ 610 (792)
|...|++++|+|++++| ++++.||.|+|||+. + +..+..+. .|...|++++|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS-KNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS-SSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC-CceeeeeecccCCCCceEEEEcCCCC
Confidence 33379999999999996 899999999999998 5 55666665 5778999999999976
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeEE-------EeeCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeEEEE-ecCCC
Q 003840 611 DLICSCDGDGEIRYWSINNGSCTR-------VFKGGTAQMRFQPH---LGRYLAAAAENVVSILDAETQACRLS-LQGHT 679 (792)
Q Consensus 611 ~ll~sgs~Dg~I~iwdl~~~~~~~-------~~~~~~~~v~~sp~---~~~lla~s~dg~I~i~D~~t~~~~~~-l~~h~ 679 (792)
+|++++.||.|++|++.++.... .....+.+++|+|+ +.++++++.|+.|++||+++++.+.. +.+|.
T Consensus 163 -~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 163 -TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp -EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred -EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 55688899999999998876442 23457889999999 88999999999999999999988777 56899
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee-------------------------cCCCceEEEEEeC
Q 003840 680 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-------------------------CNGNKFHSCVFHP 733 (792)
Q Consensus 680 ~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~-------------------------~~~~~i~si~fsp 733 (792)
..|.+++|+ ++++|++++.| .|+|||+.++ +++..+. .....+..++|+|
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 999999999 99999999999 9999999887 4444443 2235689999999
Q ss_pred CCCEEEEEE-cCCeEEEEEC--CCC---cEE-EEcccCCCeEEEEEeCCCCEEEEEeC-------CCcEEEe
Q 003840 734 TYPSLLVIG-CYQSLELWNM--SEN---KTM-TLTAHEGLIAALAVSTETGYVASASH-------DKFVKLW 791 (792)
Q Consensus 734 dg~~L~sgs-~dg~I~IwDl--~~~---~~~-~~~~h~~~V~sl~fspdg~~LaSgs~-------DG~I~IW 791 (792)
++++|++++ .++.|+|||+ .++ +.+ .+..| +.|.+++|+|++ ++++++. +..|.||
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence 999999999 8999999999 554 333 45566 889999999964 4444433 4557877
No 102
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=5.3e-30 Score=288.65 Aligned_cols=250 Identities=18% Similarity=0.362 Sum_probs=214.2
Q ss_pred eeeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCC----------CceeEEeccCCCCEEEEEECCCCC-eEEEE
Q 003840 505 ANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDT----------LKSKTNLEEHSSLITDVRFSPSMP-RLATS 572 (792)
Q Consensus 505 ~~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~t----------~~~~~~l~~h~~~V~~i~fspdg~-~Lasg 572 (792)
......|.+.|++++|+|+ +++||+++.||.|+|||+.+ ...+..+.+|...|++|+|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 3456689999999999997 78999999999999999986 677888999999999999999988 99999
Q ss_pred eCCCcEEEEeCCCCCc------eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEe
Q 003840 573 SFDKTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ 646 (792)
Q Consensus 573 s~Dg~V~IWdl~s~~~------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s 646 (792)
+.||.|+|||+..... ....+.+|...|.+++|+|++..+|++++.||.|++||++++..
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~-------------- 266 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT-------------- 266 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--------------
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--------------
Confidence 9999999999987322 14667789999999999997778898999999999999986521
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCC
Q 003840 647 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGN 724 (792)
Q Consensus 647 p~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~-~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~ 724 (792)
.+.+..+..|...|++++|+|++. +|++++.| .|++||+++.. ..+..+..|..
T Consensus 267 ----------------------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~ 322 (430)
T 2xyi_A 267 ----------------------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKD 322 (430)
T ss_dssp ----------------------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSS
T ss_pred ----------------------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCC
Confidence 122233446888999999999987 68889988 99999998643 46677788999
Q ss_pred ceEEEEEeCCCC-EEEEEEcCCeEEEEECCC--------------CcEE-EEcccCCCeEEEEEeCCCC-EEEEEeCCCc
Q 003840 725 KFHSCVFHPTYP-SLLVIGCYQSLELWNMSE--------------NKTM-TLTAHEGLIAALAVSTETG-YVASASHDKF 787 (792)
Q Consensus 725 ~i~si~fspdg~-~L~sgs~dg~I~IwDl~~--------------~~~~-~~~~h~~~V~sl~fspdg~-~LaSgs~DG~ 787 (792)
.|.+++|+|+++ +|++++.|+.|+|||+.. ...+ .+.+|...|++++|+|++. +|++++.||.
T Consensus 323 ~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~ 402 (430)
T 2xyi_A 323 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 402 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence 999999999995 688999999999999987 2333 6678999999999999999 9999999999
Q ss_pred EEEeC
Q 003840 788 VKLWK 792 (792)
Q Consensus 788 I~IWd 792 (792)
|+||+
T Consensus 403 i~iw~ 407 (430)
T 2xyi_A 403 MQVWQ 407 (430)
T ss_dssp EEEEE
T ss_pred EEEeE
Confidence 99996
No 103
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.2e-31 Score=295.96 Aligned_cols=260 Identities=17% Similarity=0.231 Sum_probs=214.9
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeEEe-ccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCC---CC--ceeEE
Q 003840 520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADN---PG--YSLRT 592 (792)
Q Consensus 520 fspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l-~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s---~~--~~i~~ 592 (792)
|++++..+++++ +|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|+|||+.+ .. .....
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 677887777665 387 557888888 88999999999999 999999999999999999975 22 12333
Q ss_pred ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC---CCeeEEEeeC---------------CeeEEE--EecCCCEE
Q 003840 593 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN---NGSCTRVFKG---------------GTAQMR--FQPHLGRY 652 (792)
Q Consensus 593 ~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~---~~~~~~~~~~---------------~~~~v~--~sp~~~~l 652 (792)
+ .|...|++++|+|++. +|++++.||.|++||++ .+++...+.. .+.++. +++++..+
T Consensus 108 ~-~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 108 Y-DCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp E-ECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred c-cCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 3 5999999999999865 66699999999999995 5554443321 223333 45778899
Q ss_pred EEEEcCCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee-cCCCceEE
Q 003840 653 LAAAAENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHS 728 (792)
Q Consensus 653 la~s~dg~I~i~D~~t~~~~~~l~~--h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~-~~~~~i~s 728 (792)
++++.|+.|++||+++++++..+.. |...|++++|+|++++|++++.| .|++||++++ .++..+. .+...|.+
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~ 262 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPITH 262 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceEE
Confidence 9999999999999999999999988 88999999999999999999999 9999999875 6777765 67778999
Q ss_pred EEEeC----CCCEEEEEEcCCeEEEEECCCCcEE-EEcc--------------------------cCCCeEEEEEeCCCC
Q 003840 729 CVFHP----TYPSLLVIGCYQSLELWNMSENKTM-TLTA--------------------------HEGLIAALAVSTETG 777 (792)
Q Consensus 729 i~fsp----dg~~L~sgs~dg~I~IwDl~~~~~~-~~~~--------------------------h~~~V~sl~fspdg~ 777 (792)
++|+| ++.+|++++.|+.|+|||+.+++++ .+.+ |...|++++|+ +++
T Consensus 263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~ 341 (437)
T 3gre_A 263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK 341 (437)
T ss_dssp EEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred EEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence 96664 6779999999999999999988866 3332 56678999999 789
Q ss_pred EEEEEeCCCcEEEeC
Q 003840 778 YVASASHDKFVKLWK 792 (792)
Q Consensus 778 ~LaSgs~DG~I~IWd 792 (792)
+|++|+.||.|+|||
T Consensus 342 ~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 342 ILLTDEATSSIVMFS 356 (437)
T ss_dssp EEEEEGGGTEEEEEE
T ss_pred EEEecCCCCeEEEEE
Confidence 999999999999996
No 104
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-30 Score=284.96 Aligned_cols=263 Identities=10% Similarity=0.059 Sum_probs=211.2
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC--------Ccee
Q 003840 519 HFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP--------GYSL 590 (792)
Q Consensus 519 afspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~--------~~~i 590 (792)
.+..|+++|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ |++++.|++|++|+.+.. ...+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 445688899999999999999999999888887 466888889988 999999999999977631 2323
Q ss_pred EEe-cccCCCeEEEEEcC--CCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEcCCeEEE
Q 003840 591 RTF-MGHSASVMSLDFHP--NKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSI 663 (792)
Q Consensus 591 ~~~-~~h~~~V~sl~fsp--d~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~dg~I~i 663 (792)
..+ ..|...|.+++|+| ++. ++++++.||.|++||+++++++..+. ..+.+++|+|++..+++++.|+.|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 333 36778999999999 765 66699999999999999998876552 35788999999999999999999999
Q ss_pred EECCCCeEE-EEecC-CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCce--EEEEEeCCCCEEE
Q 003840 664 LDAETQACR-LSLQG-HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKF--HSCVFHPTYPSLL 739 (792)
Q Consensus 664 ~D~~t~~~~-~~l~~-h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i--~si~fspdg~~L~ 739 (792)
||+++++.+ ..+.. |...|++++|+|++.+|++++++.|++||+++......+..+..+...+ .+++|+|++++|+
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 999999877 78888 9999999999999999999997799999999875443333333333333 4699999999999
Q ss_pred EEEc-CCeEEEEECCCCcEE-EEcccCCCeEEEEEeC---CCCEEEEEeCCCcEEEe
Q 003840 740 VIGC-YQSLELWNMSENKTM-TLTAHEGLIAALAVST---ETGYVASASHDKFVKLW 791 (792)
Q Consensus 740 sgs~-dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fsp---dg~~LaSgs~DG~I~IW 791 (792)
+++. |+.|+||++.+.... .. ..+..++|.+ +...|++++.||.+++|
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 9998 999999999665432 22 5567788887 78888888888888775
No 105
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.2e-31 Score=303.81 Aligned_cols=254 Identities=10% Similarity=0.052 Sum_probs=196.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcee----EEeccCCCCEEEEEECCC------CCeEEEEeCCCcEEEEeCCCCCc---
Q 003840 522 SDGKLLATGGHDKKAVLWHTDTLKSK----TNLEEHSSLITDVRFSPS------MPRLATSSFDKTVRVWDADNPGY--- 588 (792)
Q Consensus 522 pdg~~Lasgs~Dg~I~vWdl~t~~~~----~~l~~h~~~V~~i~fspd------g~~Lasgs~Dg~V~IWdl~s~~~--- 588 (792)
|++++|++++.|++|+|||+.+++.. ..+..|.+.|++|+|+|+ +.+||+++.||+|+|||+.+...
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~ 250 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH 250 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence 33344555668899999999877643 346678899999999996 57999999999999999986421
Q ss_pred -------eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEe---eCCeeEE--EEecCC-CEEEE
Q 003840 589 -------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF---KGGTAQM--RFQPHL-GRYLA 654 (792)
Q Consensus 589 -------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~---~~~~~~v--~~sp~~-~~lla 654 (792)
....+.+|...|++++|++++ +|++|+.||+|++||++++.. ...+ ...+.++ .|++++ ..|++
T Consensus 251 ~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 251 VFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp EEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred cceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEE
Confidence 234778899999999999863 678999999999999997643 2333 3567777 467776 78899
Q ss_pred EEcCCeEEEEECCCCeEEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 003840 655 AAAENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 731 (792)
Q Consensus 655 ~s~dg~I~i~D~~t~~~~~~l~~h~~--~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~f 731 (792)
++.|+.|+|||+++++++..+.+|.. .|.+++|+|++..|++++.| +|++||++++ .++..+.+|...|.+++|
T Consensus 329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---~~~~~l~gH~~~V~sva~ 405 (524)
T 2j04_B 329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRETTITAIGV 405 (524)
T ss_dssp EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---TCCEEEEECSSCEEEEEC
T ss_pred eccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---ccceeeecCCCceEEEEe
Confidence 99999999999999877666666543 58899999999999999988 9999999876 556677789999999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEEEEc-----ccCCCeEEEEEeCCCCEEE
Q 003840 732 HPTYPSLLVIGCYQSLELWNMSENKTMTLT-----AHEGLIAALAVSTETGYVA 780 (792)
Q Consensus 732 spdg~~L~sgs~dg~I~IwDl~~~~~~~~~-----~h~~~V~sl~fspdg~~La 780 (792)
+|++++|++|+.|++|+|||+......... .+...|++++|+|+++.+.
T Consensus 406 Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~ 459 (524)
T 2j04_B 406 SRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYR 459 (524)
T ss_dssp CSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEE
T ss_pred CCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEE
Confidence 999999999999999999998764221111 1122578999999998653
No 106
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.4e-29 Score=281.79 Aligned_cols=267 Identities=16% Similarity=0.225 Sum_probs=218.9
Q ss_pred CCCCCcceeccCCcce-eeeeeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------ceeEEeccCCCCE
Q 003840 487 RDAGGRGMDVSQGFSF-KEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLI 557 (792)
Q Consensus 487 ~d~~~~~~d~~~~~~~-~~~~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~-------~~~~~l~~h~~~V 557 (792)
.++.+.+|++.+.... ..+..+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++ +.+..+.+|...|
T Consensus 55 ~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v 134 (402)
T 2aq5_A 55 GGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV 134 (402)
T ss_dssp SSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCE
T ss_pred CCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeE
Confidence 3455667776543222 45567889999999999999 9999999999999999999987 6688899999999
Q ss_pred EEEEECCCC-CeEEEEeCCCcEEEEeCCCCCceeEEe--cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE
Q 003840 558 TDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 634 (792)
Q Consensus 558 ~~i~fspdg-~~Lasgs~Dg~V~IWdl~s~~~~i~~~--~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~ 634 (792)
++++|+|++ .+|++++.||.|+|||+++ +..+..+ ..|...|.+++|+|++. +|++++.||.|++||+++++.+.
T Consensus 135 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~ 212 (402)
T 2aq5_A 135 GIVAWHPTAQNVLLSAGCDNVILVWDVGT-GAAVLTLGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKGTVVA 212 (402)
T ss_dssp EEEEECSSBTTEEEEEETTSCEEEEETTT-TEEEEEECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEEECcCCCCEEEEEcCCCEEEEEECCC-CCccEEEecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCCceee
Confidence 999999998 6999999999999999997 6777788 78999999999999876 55589999999999999999888
Q ss_pred Ee-eC----CeeEEEEecCCCEEEEE---EcCCeEEEEECCCCeE-EEEe-cCCCCCeEEEEEcCCCCEEEEEe-CC-eE
Q 003840 635 VF-KG----GTAQMRFQPHLGRYLAA---AAENVVSILDAETQAC-RLSL-QGHTKPIDSVCWDPSGELLASVS-ED-SV 702 (792)
Q Consensus 635 ~~-~~----~~~~v~~sp~~~~lla~---s~dg~I~i~D~~t~~~-~~~l-~~h~~~V~sv~~spdg~~Las~s-~d-~I 702 (792)
.+ .. .+..+.|++++..++++ +.|+.|++||+++.+. +... ..|...|.+++|+|++++|++++ .| .|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i 292 (402)
T 2aq5_A 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSI 292 (402)
T ss_dssp EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeE
Confidence 77 32 25789999998777777 5899999999998653 2222 24778899999999999987544 56 99
Q ss_pred EEEECCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 703 RVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 703 ~IwDl~s~~~-~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
++||+.++.. ...+..+. +...+.+++|+|++.++++ .++.+++|++.++.+.
T Consensus 293 ~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 293 RYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp EEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred EEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 9999987653 23333333 5688999999999987764 5669999999887654
No 107
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-30 Score=295.85 Aligned_cols=308 Identities=10% Similarity=0.072 Sum_probs=233.9
Q ss_pred CcceEEEEeCCCeeeecCCC-eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeee
Q 003840 429 SKPLMMFGTDGAGTLTSPSN-QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 507 (792)
Q Consensus 429 ~k~~l~~s~Dg~~~~ss~s~-~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~ 507 (792)
....+.|||||+.+++++.+ .|=|.+.+ .++. +-.......-+.+++ ..+.|+++.+... ....
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~d~~~~---~~l~-----gh~~~v~~V~FsPdg------~~~~~~~~~~~~~-~~~~ 81 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIGQPKYA---KDIN-----CNSKNLFHVKEFPLE------FENKLDFELAQQN-GLLN 81 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEEEECCC---SCCS-----SBGGGTEEEEEECCC------CCCTTTTSCCCSS-CSST
T ss_pred cEEEEEECCCCCEEEEEcCCceeeccccc---ceec-----CCCccEEEEEECCCC------CcceEEEEeCCCc-eEee
Confidence 34578999999999998888 33254333 3221 111112222244443 4555555544211 1112
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC-----CEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003840 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~-----~V~~i~fspdg~~Lasgs~Dg~V~IWd 582 (792)
+ .|...|++|+|||||++||+++.||.|+|||.+. ++..+. |.. .|.+++|+|||++||+|+.||+|+|||
T Consensus 82 ~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 82 S-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS 157 (588)
T ss_dssp T-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred c-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence 2 5588999999999999999999999999999655 666667 665 599999999999999999999999999
Q ss_pred CCCCCc------eeEEe----cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE---EEe----eCCeeEEEE
Q 003840 583 ADNPGY------SLRTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVF----KGGTAQMRF 645 (792)
Q Consensus 583 l~s~~~------~i~~~----~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~---~~~----~~~~~~v~~ 645 (792)
+.++.. .+.++ .+|...|.+++|+|++ +++++.|++|++||+..+... ..+ ...+..++|
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF 234 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI 234 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence 987432 35665 6788899999999997 557888999999999887742 333 245788999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEE--cCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC
Q 003840 646 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW--DPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 722 (792)
Q Consensus 646 sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~--spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~ 722 (792)
+ +..+++++ ++.|++||+.+++......+|...|..++| +|++..|++++++ + ++|.+.
T Consensus 235 s--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d-------------- 296 (588)
T 2j04_A 235 V--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED-------------- 296 (588)
T ss_dssp E--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS--------------
T ss_pred E--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec--------------
Confidence 9 56666665 799999999998885444479999999999 9999999999988 7 999985
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC
Q 003840 723 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 784 (792)
Q Consensus 723 ~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~ 784 (792)
.+.|+|++..+++. |++|++|+...+.... ..+...|++++|+|||.++|+++.
T Consensus 297 -----~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~-~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 -----ELHVTADNIIAPYL--EKKFKKWSTIWNEFNN-YETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp -----SEEEECCCSSHHHH--HHHHHHTTTTTTSSSS-SCCEEEEEEEEECTTSSEEEEEEE
T ss_pred -----cEEECCCceEEEEc--CCEEEEEECCCCceee-eccceEEEEEEECCCCCEEEEEEe
Confidence 15699999866664 8999999987665333 334667999999999999999875
No 108
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-30 Score=312.19 Aligned_cols=250 Identities=20% Similarity=0.319 Sum_probs=212.0
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeEEeccCCCCEEEEEECCC--CCeEEEEeCCCcEEEE
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVW 581 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~--t~~~~~~l~~h~~~V~~i~fspd--g~~Lasgs~Dg~V~IW 581 (792)
..+.+|.+.|+|++|+|+|++|++|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++|+.||.|+||
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4678999999999999999999999999999999998 56778889999999999999988 8999999999999999
Q ss_pred eCCCCC-ceeEEecccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCC
Q 003840 582 DADNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 659 (792)
Q Consensus 582 dl~s~~-~~i~~~~~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg 659 (792)
|+.++. ..+..+.+|...|++++|+|++ ..++++|+.||.|++||++++....
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~------------------------- 137 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS------------------------- 137 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC-------------------------
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc-------------------------
Confidence 998732 2667788899999999999982 3466799999999999998653211
Q ss_pred eEEEEECCCCeEEEEecCCCCCeEEEEEcC-------------CCCEEEEEeCC-eEEEEECCCCCCc-ceEEEeecCCC
Q 003840 660 VVSILDAETQACRLSLQGHTKPIDSVCWDP-------------SGELLASVSED-SVRVWTVGSGSEG-ECVHELSCNGN 724 (792)
Q Consensus 660 ~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp-------------dg~~Las~s~d-~I~IwDl~s~~~~-~~i~~~~~~~~ 724 (792)
...+.+|...|.+++|+| ++.+|++++.| .|++||++++... .++..+..|..
T Consensus 138 ------------~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~ 205 (753)
T 3jro_A 138 ------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205 (753)
T ss_dssp ------------CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred ------------eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC
Confidence 112345788899999999 58999999998 9999999876433 56677888999
Q ss_pred ceEEEEEeCC---CCEEEEEEcCCeEEEEECCCCc------EEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 725 KFHSCVFHPT---YPSLLVIGCYQSLELWNMSENK------TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 725 ~i~si~fspd---g~~L~sgs~dg~I~IwDl~~~~------~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.|.+++|+|+ +.+|++++.||.|++||+.++. ......|...|++++|+|++.+|++|+.||.|+|||
T Consensus 206 ~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 206 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 9999999999 8999999999999999998873 224456889999999999999999999999999996
No 109
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-28 Score=279.58 Aligned_cols=244 Identities=10% Similarity=0.036 Sum_probs=201.9
Q ss_pred eeecCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECC--CCceeEEec--cCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 507 SVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTD--TLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~L-asgs~Dg~I~vWdl~--t~~~~~~l~--~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
...+|.+.|++++|+|+|++| |+|+.||.|+|||+. +++.+..+. .|...|++++|+|++++|++|+.||.|++|
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 446788899999999999996 889999999999999 888888886 577899999999999999999999999999
Q ss_pred eCCCCCc---eeEEecccCCCeEEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeEEEe----eCCeeEEEEecCCCEE
Q 003840 582 DADNPGY---SLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRY 652 (792)
Q Consensus 582 dl~s~~~---~i~~~~~h~~~V~sl~fspd--~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~sp~~~~l 652 (792)
++.+... ....+.+|...|++++|+|+ +..+|++|+.|+.|++||+++++++..+ ...+.+++|+ ++.++
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence 9987332 23367789999999999998 2346779999999999999999877663 3467889999 99999
Q ss_pred EEEEcCCeEEEEECCCCeEEEEecC-------------------------CCCCeEEEEEcCCCCEEEEEe-CC-eEEEE
Q 003840 653 LAAAAENVVSILDAETQACRLSLQG-------------------------HTKPIDSVCWDPSGELLASVS-ED-SVRVW 705 (792)
Q Consensus 653 la~s~dg~I~i~D~~t~~~~~~l~~-------------------------h~~~V~sv~~spdg~~Las~s-~d-~I~Iw 705 (792)
++++.|+.|++||+++++++..+.. ....|.+++|+|++++|++++ .+ .|+||
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 9999999999999999998887763 245799999999999999998 56 99999
Q ss_pred EC--CCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-------CCeEEEEECC
Q 003840 706 TV--GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-------YQSLELWNMS 753 (792)
Q Consensus 706 Dl--~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-------dg~I~IwDl~ 753 (792)
|+ ..+.....+..+..+ ..+.+++|+|++ .+++++. +..|.||.+.
T Consensus 336 ~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 336 EMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence 99 554445667777777 789999999954 4444433 3457888654
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=4.8e-28 Score=267.14 Aligned_cols=260 Identities=12% Similarity=0.142 Sum_probs=218.3
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCCCCCceeEEecccCCCeEEE
Q 003840 525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 603 (792)
Q Consensus 525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~L-asgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl 603 (792)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+ +..+..+..+. .|.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~-~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCC-CeEEEEEECCC-Cccce
Confidence 367888999999999999999999888775 48999999999976 6777999999999987 56666666544 89999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEE-EEEcCCeEEEEECCCCeEEEEecCCCC
Q 003840 604 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYL-AAAAENVVSILDAETQACRLSLQGHTK 680 (792)
Q Consensus 604 ~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll-a~s~dg~I~i~D~~t~~~~~~l~~h~~ 680 (792)
+|+|+++.++++++.|+.|++||+.+++.+..+.. .+..++|+++++.++ +++.++.|++||+++++.+..+..+ .
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 99999998888888889999999999998877653 467899999999884 5556999999999999998888765 4
Q ss_pred CeEEEEEcCCCCEE-EEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE---cCCeEEEEECCCC
Q 003840 681 PIDSVCWDPSGELL-ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG---CYQSLELWNMSEN 755 (792)
Q Consensus 681 ~V~sv~~spdg~~L-as~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs---~dg~I~IwDl~~~ 755 (792)
.+.+++|+|++++| ++++.+ .|++||++++ .++..+. +...+.+++|+|++++|++++ .++.|++||+.++
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 57999999999987 455666 9999999876 4454444 456789999999999999998 6899999999999
Q ss_pred cEEEEcccCCCeEEEEEeCCCCEE-EEEeCCCcEEEeC
Q 003840 756 KTMTLTAHEGLIAALAVSTETGYV-ASASHDKFVKLWK 792 (792)
Q Consensus 756 ~~~~~~~h~~~V~sl~fspdg~~L-aSgs~DG~I~IWd 792 (792)
+.+........+.+++|+|++++| ++++.|+.|++||
T Consensus 235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 887444444568999999999977 5678899999996
No 111
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=6e-29 Score=268.37 Aligned_cols=269 Identities=10% Similarity=0.135 Sum_probs=223.8
Q ss_pred CcceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003840 429 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 505 (792)
Q Consensus 429 ~k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~ 505 (792)
....+.|+||+.++++++.+ +|||+.+++ .....
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~-------------------------------------------~~~~~ 49 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQA-------------------------------------------KNVDL 49 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTT-------------------------------------------TEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC-------------------------------------------ccccc
Confidence 34578999999988775443 778765542 11223
Q ss_pred eeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEC-CCCceeEEecc--CCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 506 NSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHT-DTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl-~t~~~~~~l~~--h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
..+.+|...|++++|+++++ +|++|+.||.|++||+ .+++. ..+.. |...|++++|+| +.+|++++.|+.|++|
T Consensus 50 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iw 127 (342)
T 1yfq_A 50 LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVI 127 (342)
T ss_dssp EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEE
T ss_pred eeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEE
Confidence 44558999999999999999 9999999999999999 77654 77788 999999999999 9999999999999999
Q ss_pred eCCCC--------CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeE--EE---eeCCeeEEEEec
Q 003840 582 DADNP--------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCT--RV---FKGGTAQMRFQP 647 (792)
Q Consensus 582 dl~s~--------~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~--~~---~~~~~~~v~~sp 647 (792)
|+++. ...+..+. |...|.+++|++++ +++++.|+.|++||+++ +... .. ....+.+++|+|
T Consensus 128 d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~ 203 (342)
T 1yfq_A 128 DPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP 203 (342)
T ss_dssp CHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECS
T ss_pred cccccccccccccCCeeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECC
Confidence 98751 22333444 88999999999875 66899999999999998 5432 11 245678899999
Q ss_pred -CCCEEEEEEcCCeEEEEECCCC------eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003840 648 -HLGRYLAAAAENVVSILDAETQ------ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSG 710 (792)
Q Consensus 648 -~~~~lla~s~dg~I~i~D~~t~------~~~~~l~~h~~---------~V~sv~~spdg~~Las~s~d-~I~IwDl~s~ 710 (792)
++..+++++.||.|++||++.. +.+..+..|.. .|.+++|+|++++|++++.| .|++||+.++
T Consensus 204 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp GGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred CCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 9999999999999999999887 77778887765 99999999999999999999 9999999876
Q ss_pred CCcceEEEeecC-CCceEEEEEeCCCCEEEEEEcCCe-EEEEE
Q 003840 711 SEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCYQS-LELWN 751 (792)
Q Consensus 711 ~~~~~i~~~~~~-~~~i~si~fspdg~~L~sgs~dg~-I~IwD 751 (792)
+.+..+..| ...|.+++ |++.+|++++.||. .+.|.
T Consensus 284 ---~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 284 ---KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ---EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ---hHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 778888888 89999999 99999999999998 55554
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.5e-30 Score=289.32 Aligned_cols=259 Identities=12% Similarity=0.102 Sum_probs=210.6
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCce
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 589 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~ 589 (792)
.-...|.+++|+|||+++|+++.|++|+ |...++ .+.+|...|++++|+|+| .++.+.+|+.+. ..
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~--~~ 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQ--NG 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS--SC
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCC--ce
Confidence 4457899999999999999999999999 755554 447999999999999998 455555555432 12
Q ss_pred eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC-------CeeEEEEecCCCEEEEEEcCCeEE
Q 003840 590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-------GTAQMRFQPHLGRYLAAAAENVVS 662 (792)
Q Consensus 590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-------~~~~v~~sp~~~~lla~s~dg~I~ 662 (792)
+..+ .|...|.+++|+|+|. +|++++.||.|++||... ++..+.. .+.+++|+|++..|++++.||.|+
T Consensus 79 ~~~~-~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 79 LLNS-QPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SSTT-SCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred Eeec-CCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 2222 4588999999999987 455999999999999644 4444432 277899999999999999999999
Q ss_pred EEECCCCe-------EEEEe----cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe-ecCCCceEEE
Q 003840 663 ILDAETQA-------CRLSL----QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL-SCNGNKFHSC 729 (792)
Q Consensus 663 i~D~~t~~-------~~~~l----~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~-~~~~~~i~si 729 (792)
|||+.++. .+.++ .+|..+|.+++|+|+| +++++.| .|++||+..+........+ ..|...|.++
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sv 232 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDL 232 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCE
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEE
Confidence 99999885 35666 6688899999999999 6666767 9999999876432234555 3677899999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEEE-EcccCCCeEEEEE--eCCCCEEEEEeCCCcEEEeC
Q 003840 730 VFHPTYPSLLVIGCYQSLELWNMSENKTMT-LTAHEGLIAALAV--STETGYVASASHDKFVKLWK 792 (792)
Q Consensus 730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-~~~h~~~V~sl~f--spdg~~LaSgs~DG~I~IWd 792 (792)
+|+ +.+|++++ +++|++||+.+++... ..+|...|.+++| +||+..|+++++||+ ++|.
T Consensus 233 aFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 233 KIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp EEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred EEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 999 57888886 6999999999998854 4489999999999 999999999999999 9984
No 113
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=5.9e-28 Score=262.01 Aligned_cols=277 Identities=15% Similarity=0.263 Sum_probs=223.8
Q ss_pred CcceEEEEeC---CCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcce
Q 003840 429 SKPLMMFGTD---GAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSF 502 (792)
Q Consensus 429 ~k~~l~~s~D---g~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~ 502 (792)
....+.|+|+ |.++++++.+ +|||+.+...
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------------------------------------------- 76 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------------------------------------------- 76 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--------------------------------------------
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--------------------------------------------
Confidence 4567899999 5887775544 7788765210
Q ss_pred eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEE--CCCCCeEEEEeCCCcEEE
Q 003840 503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--SPSMPRLATSSFDKTVRV 580 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~f--spdg~~Lasgs~Dg~V~I 580 (792)
.....+.+|...|++++|+|++++|++|+.||.|+|||+.+++.+. +..|...|++++| ++++.+|++++.||.|++
T Consensus 77 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 155 (368)
T 3mmy_A 77 TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKF 155 (368)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEE
T ss_pred eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEE
Confidence 1225677899999999999999999999999999999999988766 5679999999999 999999999999999999
Q ss_pred EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-----eCCeeEEEEecCCCE----
Q 003840 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQMRFQPHLGR---- 651 (792)
Q Consensus 581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~~~~v~~sp~~~~---- 651 (792)
||+++ +..+..+..+. .+.++.+.++ .+++++.|+.+++|+++........ .....++.+.+....
T Consensus 156 wd~~~-~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (368)
T 3mmy_A 156 WDTRS-SNPMMVLQLPE-RCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG 230 (368)
T ss_dssp ECSSC-SSCSEEEECSS-CEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEE
T ss_pred EECCC-CcEEEEEecCC-CceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCe
Confidence 99997 56667776554 6777777754 5567888999999999876544322 234556666665544
Q ss_pred EEEEEcCCeEEEEECCCC---eEEEEecCCCC------------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 003840 652 YLAAAAENVVSILDAETQ---ACRLSLQGHTK------------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 715 (792)
Q Consensus 652 lla~s~dg~I~i~D~~t~---~~~~~l~~h~~------------~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~ 715 (792)
+++++.|+.|++||++.. ..+..+..|.. .|++++|+|++++|++++.| .|++||+.++ .+
T Consensus 231 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---~~ 307 (368)
T 3mmy_A 231 FALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---TK 307 (368)
T ss_dssp EEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EE
T ss_pred EEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---cE
Confidence 999999999999999987 55677777765 79999999999999999999 9999999876 78
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeE---EEEECCCCcEE
Q 003840 716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL---ELWNMSENKTM 758 (792)
Q Consensus 716 i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I---~IwDl~~~~~~ 758 (792)
+..+..|...|.+++|+|++.+|++++.|+.. .+|+.+....+
T Consensus 308 ~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i 353 (368)
T 3mmy_A 308 LKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYI 353 (368)
T ss_dssp EEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred EEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCCcccee
Confidence 88889999999999999999999999998744 44455554444
No 114
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.8e-28 Score=262.85 Aligned_cols=286 Identities=17% Similarity=0.248 Sum_probs=205.9
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...+.|++|+.++++++.+ +|||+.++.. .++...
T Consensus 14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------------------------------------~~~~~~ 51 (351)
T 3f3f_A 14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS------------------------------------------NWELSD 51 (351)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECSSSC------------------------------------------CEEEEE
T ss_pred eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC------------------------------------------cceecc
Confidence 4578999999998886554 7888765321 123556
Q ss_pred eeecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCC---------ceeEEeccCCCCEEEEEECCC--CCeEEEEe
Q 003840 507 SVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTL---------KSKTNLEEHSSLITDVRFSPS--MPRLATSS 573 (792)
Q Consensus 507 ~l~~H~~~V~~lafsp--dg~~Lasgs~Dg~I~vWdl~t~---------~~~~~l~~h~~~V~~i~fspd--g~~Lasgs 573 (792)
.+.+|...|++++|++ |+++|++|+.||.|+|||+.++ +.+..+..|...|++++|+|+ +.+|++++
T Consensus 52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 131 (351)
T 3f3f_A 52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG 131 (351)
T ss_dssp EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec
Confidence 7889999999999999 6999999999999999999887 557788899999999999999 99999999
Q ss_pred CCCcEEEEeCCCCCceeEEe-------------cccCCCeEEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCee--EEEe
Q 003840 574 FDKTVRVWDADNPGYSLRTF-------------MGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSC--TRVF 636 (792)
Q Consensus 574 ~Dg~V~IWdl~s~~~~i~~~-------------~~h~~~V~sl~fspd--~~~ll~sgs~Dg~I~iwdl~~~~~--~~~~ 636 (792)
.||.|++||+++.. .+..+ ..|...|.+++|+|+ ...++++++.|+.+.+|+...++. +..+
T Consensus 132 ~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (351)
T 3f3f_A 132 NDGILRLYDALEPS-DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL 210 (351)
T ss_dssp TTCEEEEEECSSTT-CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEEC
T ss_pred CCCcEEEecCCChH-HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeec
Confidence 99999999998743 22111 157889999999997 345777999999999888887765 3443
Q ss_pred ---eCCeeEEEEecCC----CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEEC
Q 003840 637 ---KGGTAQMRFQPHL----GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTV 707 (792)
Q Consensus 637 ---~~~~~~v~~sp~~----~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl 707 (792)
...+.+++|+|++ ..+++++.|+.|++||++++........+...+....+.+....++.+..+ ...++.+
T Consensus 211 ~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (351)
T 3f3f_A 211 PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAEL 290 (351)
T ss_dssp CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------
T ss_pred CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeee
Confidence 3467889999998 789999999999999999876655555444445555555555555554433 2222333
Q ss_pred CCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 708 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 708 ~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
........+..+..|...|.+++|+|++++|++++.||.|+|||+.+++.+
T Consensus 291 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 291 QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred cccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 222334778888899999999999999999999999999999999987544
No 115
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=2.9e-29 Score=270.71 Aligned_cols=247 Identities=16% Similarity=0.257 Sum_probs=197.6
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...+.|++||.++++++.+ +|||+.++.. ..+.
T Consensus 16 V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~--------------------------------------------~~~~ 51 (316)
T 3bg1_A 16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ--------------------------------------------ILIA 51 (316)
T ss_dssp EEEEEECGGGCEEEEEETTTEEEEEEEETTEE--------------------------------------------EEEE
T ss_pred EEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc--------------------------------------------EEEE
Confidence 3468899999999886654 7888764321 1345
Q ss_pred eeecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCC--ceeEEeccCCCCEEEEEECCC--CCeEEEEeCCCcEEE
Q 003840 507 SVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRV 580 (792)
Q Consensus 507 ~l~~H~~~V~~lafsp--dg~~Lasgs~Dg~I~vWdl~t~--~~~~~l~~h~~~V~~i~fspd--g~~Lasgs~Dg~V~I 580 (792)
.+++|.+.|++++|++ ++++||+|+.|++|+|||++++ .....+.+|...|++++|+|+ +.+|++|+.|+.|++
T Consensus 52 ~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l 131 (316)
T 3bg1_A 52 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131 (316)
T ss_dssp EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence 6889999999999986 4899999999999999999887 456678899999999999997 789999999999999
Q ss_pred EeCCCCCce--eEEecccCCCeEEEEEcCCC----------------CeEEEEEeCCCcEEEEEcCCC---eeEEEee--
Q 003840 581 WDADNPGYS--LRTFMGHSASVMSLDFHPNK----------------DDLICSCDGDGEIRYWSINNG---SCTRVFK-- 637 (792)
Q Consensus 581 Wdl~s~~~~--i~~~~~h~~~V~sl~fspd~----------------~~ll~sgs~Dg~I~iwdl~~~---~~~~~~~-- 637 (792)
||+...... ...+.+|...|.+++|+|+. ..+|++|+.|+.|++||++.. +++..+.
T Consensus 132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h 211 (316)
T 3bg1_A 132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH 211 (316)
T ss_dssp EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence 999874322 34567899999999999973 246779999999999999765 3444444
Q ss_pred -CCeeEEEEecCC----CEEEEEEcCCeEEEEECCCC---e-EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 003840 638 -GGTAQMRFQPHL----GRYLAAAAENVVSILDAETQ---A-CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 707 (792)
Q Consensus 638 -~~~~~v~~sp~~----~~lla~s~dg~I~i~D~~t~---~-~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl 707 (792)
..+.+++|+|++ ..|++++.|+.|++||+++. . ....+..|...|.+++|+|++++|++++.| .|+||+.
T Consensus 212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 357889999986 78999999999999998762 1 123345688999999999999999999999 9999998
Q ss_pred CCCCCcceEEEee
Q 003840 708 GSGSEGECVHELS 720 (792)
Q Consensus 708 ~s~~~~~~i~~~~ 720 (792)
.......++..+.
T Consensus 292 ~~~g~~~~~~~~~ 304 (316)
T 3bg1_A 292 SVDGQWVCISDVN 304 (316)
T ss_dssp CTTSCEEEEEECC
T ss_pred CCCCcEEEeeecc
Confidence 6443334444443
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=3.5e-27 Score=260.24 Aligned_cols=265 Identities=13% Similarity=0.170 Sum_probs=215.6
Q ss_pred CCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCC
Q 003840 488 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 566 (792)
Q Consensus 488 d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~L-asgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg 566 (792)
+..+++|++..+ +.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+. .|.+++|+|++
T Consensus 11 d~~v~v~d~~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg 85 (391)
T 1l0q_A 11 SDNISVIDVTSN---KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDG 85 (391)
T ss_dssp TTEEEEEETTTT---EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS
T ss_pred CCEEEEEECCCC---eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCC
Confidence 455677777655 4555666665 49999999999977 566689999999999999998887665 89999999999
Q ss_pred CeEEEE-eCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--CCeeEE
Q 003840 567 PRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQM 643 (792)
Q Consensus 567 ~~Lasg-s~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v 643 (792)
++|+++ +.|+.|++||+.+ +..+..+. +...+.+++|+|+++.++++++.|+.|++||+.+++++..+. .....+
T Consensus 86 ~~l~~~~~~~~~v~v~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 163 (391)
T 1l0q_A 86 KQVYVTNMASSTLSVIDTTS-NTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGI 163 (391)
T ss_dssp SEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEE
T ss_pred CEEEEEECCCCEEEEEECCC-CeEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceE
Confidence 987655 5679999999987 55566655 445789999999998887899999999999999999888765 346778
Q ss_pred EEecCCCEEE-EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe---CC-eEEEEECCCCCCcceEEE
Q 003840 644 RFQPHLGRYL-AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS---ED-SVRVWTVGSGSEGECVHE 718 (792)
Q Consensus 644 ~~sp~~~~ll-a~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s---~d-~I~IwDl~s~~~~~~i~~ 718 (792)
+|++++++++ ++..++.|++||+++++.+..+. +...+.+++|+|++++|++++ .+ .|++||+.++ +.+..
T Consensus 164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---~~~~~ 239 (391)
T 1l0q_A 164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITAR 239 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---eEEEE
Confidence 9999999885 45568999999999998887776 456789999999999888887 45 9999999876 56666
Q ss_pred eecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCcEE-EEcccC
Q 003840 719 LSCNGNKFHSCVFHPTYPSLL-VIGCYQSLELWNMSENKTM-TLTAHE 764 (792)
Q Consensus 719 ~~~~~~~i~si~fspdg~~L~-sgs~dg~I~IwDl~~~~~~-~~~~h~ 764 (792)
+..+. .+.+++|+|++++|+ +++.|+.|++||+.+++.+ .+..|.
T Consensus 240 ~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 240 IPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK 286 (391)
T ss_dssp EECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred EecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence 66544 578999999999885 5567899999999998877 344443
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=3e-29 Score=279.25 Aligned_cols=264 Identities=14% Similarity=0.107 Sum_probs=180.5
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE-----EeccCCCCEEEEEECC--------CCCeEEEEe
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-----NLEEHSSLITDVRFSP--------SMPRLATSS 573 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~-----~l~~h~~~V~~i~fsp--------dg~~Lasgs 573 (792)
....|...+...++++++.+||+|+.|++|+|||+.++.... .+.+|.+.|++|+|+| |+++||+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 84 SENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp ECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred cccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 344566667777788889999999999999999999876543 3678999999999997 788999999
Q ss_pred CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEE
Q 003840 574 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 653 (792)
Q Consensus 574 ~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll 653 (792)
.|++|+|||+.+ +..+..+..|...|.+++|+|++..+|++++.|++|++||+++++........... .
T Consensus 164 ~D~tv~~Wd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~-----~----- 232 (393)
T 4gq1_A 164 DDCTLIIWRLTD-EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV-----K----- 232 (393)
T ss_dssp TTSEEEEEEEET-TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C-----S-----
T ss_pred CCCeEEEEECCC-CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc-----c-----
Confidence 999999999987 55667777899999999999998888999999999999999988765443221100 0
Q ss_pred EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc-CCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc------
Q 003840 654 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD-PSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK------ 725 (792)
Q Consensus 654 a~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~s-pdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~------ 725 (792)
...+.-++...........+|...|.++.|+ ++++.|++++.| .+++||+..+..... +..+...
T Consensus 233 ----~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~---l~~~~~~~~~~~~ 305 (393)
T 4gq1_A 233 ----NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNE---ISDSTMKLGPKNL 305 (393)
T ss_dssp ----CCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CC
T ss_pred ----cceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCce---EeeecCccccEEE
Confidence 0001111111112223345688899999987 799999999999 999999987633222 2222111
Q ss_pred ------------eEEEEEeC--CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003840 726 ------------FHSCVFHP--TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFV 788 (792)
Q Consensus 726 ------------i~si~fsp--dg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I 788 (792)
...+.|++ ++.++++|+.||.|+|||+.++... ....|...|.+++|+|||++||++++||.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 306 LPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp SCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred ccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 12233443 3335666778999999999988766 667889999999999999999999988753
No 118
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-27 Score=260.94 Aligned_cols=246 Identities=20% Similarity=0.304 Sum_probs=197.3
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...+.|++|+.++++++.+ +|||+... ..+.+.
T Consensus 14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--------------------------------------------~~~~~~ 49 (379)
T 3jrp_A 14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------------------------THKLID 49 (379)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEEEETT--------------------------------------------EEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCcEEEEecCCC--------------------------------------------cceeee
Confidence 4468899999998876433 77876521 123456
Q ss_pred eeecCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEECCC--CCeEEEEeCCCcEEE
Q 003840 507 SVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRV 580 (792)
Q Consensus 507 ~l~~H~~~V~~lafspd--g~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fspd--g~~Lasgs~Dg~V~I 580 (792)
.+.+|...|++++|+++ +++|++|+.||.|+|||+.+++ .+..+..|...|++++|+|+ +.+|++++.||.|++
T Consensus 50 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v 129 (379)
T 3jrp_A 50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 129 (379)
T ss_dssp EECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred EecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEE
Confidence 77899999999999987 9999999999999999999987 77788889999999999999 999999999999999
Q ss_pred EeCCCCC-ceeEEecccCCCeEEEEEcCC------------CCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEec
Q 003840 581 WDADNPG-YSLRTFMGHSASVMSLDFHPN------------KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQP 647 (792)
Q Consensus 581 Wdl~s~~-~~i~~~~~h~~~V~sl~fspd------------~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp 647 (792)
||+.+.. .....+..|...|.+++|+|. +..+|++++.||.|++||++++...
T Consensus 130 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------- 195 (379)
T 3jrp_A 130 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------------- 195 (379)
T ss_dssp EECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE--------------
T ss_pred EecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc--------------
Confidence 9998743 344567789999999999995 2334556666666666665543211
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC---CCEEEEEeCC-eEEEEECCCCCCcceEEEee--c
Q 003840 648 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS---GELLASVSED-SVRVWTVGSGSEGECVHELS--C 721 (792)
Q Consensus 648 ~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd---g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~--~ 721 (792)
...+..+.+|...|.+++|+|+ +.+|++++.| .|++||++++........+. .
T Consensus 196 ---------------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 254 (379)
T 3jrp_A 196 ---------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK 254 (379)
T ss_dssp ---------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSC
T ss_pred ---------------------eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecccc
Confidence 1234566789999999999999 8999999999 99999998764433333333 3
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 722 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 722 ~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
+...+.+++|+|++++|++++.||.|+|||+..
T Consensus 255 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 255 FPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 778899999999999999999999999999874
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.7e-26 Score=256.68 Aligned_cols=240 Identities=11% Similarity=0.129 Sum_probs=204.0
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCC
Q 003840 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNP 586 (792)
Q Consensus 508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~V~IWdl~s~ 586 (792)
+.+|.+.|.+++|+++++++++++.|+.|++||+++++.+..+..|...+.+++|+|++++|+++ +.|+.|++||+++
T Consensus 165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~- 243 (433)
T 3bws_A 165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT- 243 (433)
T ss_dssp HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT-
T ss_pred ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC-
Confidence 45788999999999999999999999999999999999999999999999999999999988554 5799999999987
Q ss_pred CceeEEecccCCCeEEEEEcCCCCeEEEEEe-------CCCcEEEEEcCCCeeEEEe--eCCeeEEEEecCCCEEEEE-E
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD-------GDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAA-A 656 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs-------~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~lla~-s 656 (792)
+..+..+.. ...+.+++|+|++..+++++. .|+.|++||+.+++.+..+ ......++|+|+++.++++ +
T Consensus 244 ~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 322 (433)
T 3bws_A 244 KLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM 322 (433)
T ss_dssp TEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEET
T ss_pred CcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEec
Confidence 566666654 455999999999886664443 5889999999999887765 4567789999999877655 6
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC---------------C-eEEEEECCCCCCcceEEEee
Q 003840 657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---------------D-SVRVWTVGSGSEGECVHELS 720 (792)
Q Consensus 657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~---------------d-~I~IwDl~s~~~~~~i~~~~ 720 (792)
.++.|++||+++++.+..+. +...+.+++|+|++++|++++. | .|++||+.++ +.+..+.
T Consensus 323 ~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---~~~~~~~ 398 (433)
T 3bws_A 323 CCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---TVKEFWE 398 (433)
T ss_dssp TTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---EEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---cEEEEec
Confidence 79999999999998888776 6778999999999998888876 3 8999999876 5555555
Q ss_pred cCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCC
Q 003840 721 CNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSE 754 (792)
Q Consensus 721 ~~~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~~ 754 (792)
. ...+.+++|+|++++|++++. |+.|++|++..
T Consensus 399 ~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 399 A-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp C-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred C-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 4 457899999999999998886 99999999864
No 120
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=2.6e-26 Score=266.61 Aligned_cols=275 Identities=12% Similarity=0.108 Sum_probs=226.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCceeEEeccCCCCEEEEEECC----CCCeEEEEeC-CCcEEEEeCCCCC
Q 003840 515 VICCHFSSDGKLLATGGHDKKAVLWHT--DTLKSKTNLEEHSSLITDVRFSP----SMPRLATSSF-DKTVRVWDADNPG 587 (792)
Q Consensus 515 V~~lafspdg~~Lasgs~Dg~I~vWdl--~t~~~~~~l~~h~~~V~~i~fsp----dg~~Lasgs~-Dg~V~IWdl~s~~ 587 (792)
+.+++|+|||++|++++.|+.|++||+ .+++++.++. +...+..++|+| ++++|++++. +++|.|||..+ .
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~ 258 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-L 258 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-C
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-c
Confidence 889999999999999999999999999 8898888887 455689999999 9999999885 89999999987 6
Q ss_pred ceeEEecc----------cC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE--Eee--CCeeEEEEecCCCEE
Q 003840 588 YSLRTFMG----------HS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFK--GGTAQMRFQPHLGRY 652 (792)
Q Consensus 588 ~~i~~~~~----------h~-~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~--~~~--~~~~~v~~sp~~~~l 652 (792)
+++..+.. |. ..+.++.+++++..++++...++.|.+||+.+.+.+. .+. .....+.|+|++.++
T Consensus 259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l 338 (543)
T 1nir_A 259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYF 338 (543)
T ss_dssp CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEE
T ss_pred ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEE
Confidence 66666653 22 3789999999999999999999999999998866544 332 345678999999988
Q ss_pred EEEEc-CCeEEEEECCCCeEEEEecC----CCCCeEEEEEcCC-CCEEEEEe-CC-eEEEEECCCCCC----cceEEEee
Q 003840 653 LAAAA-ENVVSILDAETQACRLSLQG----HTKPIDSVCWDPS-GELLASVS-ED-SVRVWTVGSGSE----GECVHELS 720 (792)
Q Consensus 653 la~s~-dg~I~i~D~~t~~~~~~l~~----h~~~V~sv~~spd-g~~Las~s-~d-~I~IwDl~s~~~----~~~i~~~~ 720 (792)
++++. ++.|.+||+++++++..+.. |......+ ++|+ +.+++++. .+ +|.|||+.+... .+++..+.
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~ 417 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ 417 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE
Confidence 87765 88999999999999888874 55444444 4676 66677765 34 999999987322 58899999
Q ss_pred cCCCceEEEEEeCCCCEEEEEE-------cCCeEEEEECCCCcEE-EE---------cccCCCeEEEEEeCCCCEEEEEe
Q 003840 721 CNGNKFHSCVFHPTYPSLLVIG-------CYQSLELWNMSENKTM-TL---------TAHEGLIAALAVSTETGYVASAS 783 (792)
Q Consensus 721 ~~~~~i~si~fspdg~~L~sgs-------~dg~I~IwDl~~~~~~-~~---------~~h~~~V~sl~fspdg~~LaSgs 783 (792)
.+...+..++|+|++++|++++ .+++|.|||+.+++.. .. ..+...+..+.|+++|++|+++.
T Consensus 418 ~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 497 (543)
T 1nir_A 418 GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV 497 (543)
T ss_dssp CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence 9988889999999999999987 2679999999988765 32 35677899999999999988763
Q ss_pred -----CCCcEEEeC
Q 003840 784 -----HDKFVKLWK 792 (792)
Q Consensus 784 -----~DG~I~IWd 792 (792)
.|+.|.|||
T Consensus 498 ~~~~~~~~~i~v~D 511 (543)
T 1nir_A 498 WNGKNDSSALVVVD 511 (543)
T ss_dssp ECCTTSCCEEEEEE
T ss_pred ecCCCCCCeEEEEE
Confidence 379999997
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=1.5e-26 Score=253.85 Aligned_cols=243 Identities=8% Similarity=0.041 Sum_probs=181.7
Q ss_pred EEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEe
Q 003840 538 LWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD 617 (792)
Q Consensus 538 vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs 617 (792)
||++.+...+..+..|...|++++|+||+++|++|+.|+ ++|||+++ ....... +...+..++|.++++.++++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHP-VAHIMSQ--EMRHLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETT-EEEEEEE--ECSCCCEEEECTTSSEEEEECS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCC-cceeeee--ecCCeEEEEEcCCCCEEEEEEC
Confidence 567777777778889999999999999999999998876 78999986 3333322 2235778889888887878888
Q ss_pred CCCcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEE
Q 003840 618 GDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELL 694 (792)
Q Consensus 618 ~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~L 694 (792)
.|+.|++||+.+++++..+. ..+..+.++++ .++ .+.++.|++||+.+. +.+..+.. +...+++++ .++
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~-~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIV-VSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp STTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEE-EEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred CccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEE-EEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 89999999999999887765 45566777654 343 346889999999987 65555543 444566776 666
Q ss_pred EEE--eCC-eEEEEECCCCCCc------------c-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCe-EEEEECCCCcE
Q 003840 695 ASV--SED-SVRVWTVGSGSEG------------E-CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS-LELWNMSENKT 757 (792)
Q Consensus 695 as~--s~d-~I~IwDl~s~~~~------------~-~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~-I~IwDl~~~~~ 757 (792)
+++ +.+ .|++||+.++... . ++..+.+|...|.+++|+|++.+|++++.|++ |+|||+.++++
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 664 556 9999999875310 1 26778899999999999999999999999998 99999999988
Q ss_pred E-EEc-c-cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 758 M-TLT-A-HEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 758 ~-~~~-~-h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+ .+. + |...|++++|+|++++|++++.|+.|+|||
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 7 455 4 999999999999999999999999999996
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1e-25 Score=241.80 Aligned_cols=258 Identities=10% Similarity=0.018 Sum_probs=185.2
Q ss_pred CCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCC--
Q 003840 488 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-- 565 (792)
Q Consensus 488 d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspd-- 565 (792)
...+++|+..++..++.+.++++|..+|..+.|.||..-|++..-. .-+...|+.|+|+||
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------------~~~~~~v~sla~spd~~ 124 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG-----------------NLEIREIRALFCSSDDE 124 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-----------------SSSEEEEEEECC-----
T ss_pred cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-----------------cccccceEEEEECCCcc
Confidence 3467889999999999999999999999999999986544332210 113456888999999
Q ss_pred --CCeEEEEeCCCcEEEEeCCCCCceeEE-ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeEEE---eeC
Q 003840 566 --MPRLATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRV---FKG 638 (792)
Q Consensus 566 --g~~Lasgs~Dg~V~IWdl~s~~~~i~~-~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~-~~~~~~~---~~~ 638 (792)
+.++++++.+ ++||++.+ ++.+.. ..+| |+.|++|++. +++.+.. +..
T Consensus 125 ~~~~~l~s~g~~--~~v~~l~~-g~lv~ss~~g~----------------------d~~V~~~~~s~dG~~~~s~~~~~~ 179 (356)
T 2w18_A 125 SEKQVLLKSGNI--KAVLGLTK-RRLVSSSGTLS----------------------DQQVEVMTFAEDGGGKENQFLMPP 179 (356)
T ss_dssp -CCEEEEEEEEE--EEEEEETT-TEEEEEESSST----------------------TCEEEEEEECTTSCEEEEEEECCC
T ss_pred ccccEEEeCCCe--EEEEecCC-CcEEEecccCC----------------------CCcEEEEEECCCCceeeeeccCCC
Confidence 8888887744 77786643 222222 2333 5555555552 2443332 334
Q ss_pred CeeEEEEec---CCCEEEEEEcCCeEEEEECCCCeEEEEecCCC---CCeEEEEEcCCCCEE------------EEEeCC
Q 003840 639 GTAQMRFQP---HLGRYLAAAAENVVSILDAETQACRLSLQGHT---KPIDSVCWDPSGELL------------ASVSED 700 (792)
Q Consensus 639 ~~~~v~~sp---~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~---~~V~sv~~spdg~~L------------as~s~d 700 (792)
.+..++|++ ++..|++++.|++|+|||+++++++.++.+|. ..+.+++|+|+|.++ ++|+.|
T Consensus 180 ~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D 259 (356)
T 2w18_A 180 EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV 259 (356)
T ss_dssp SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence 566778888 66888888999999999999999999988654 357788999999876 557778
Q ss_pred -eEEEEECCCCCCcceEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeE-EEEE
Q 003840 701 -SVRVWTVGSGSEGECVHEL-----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIA-ALAV 772 (792)
Q Consensus 701 -~I~IwDl~s~~~~~~i~~~-----~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~-sl~f 772 (792)
+|++||..++ +++..+ .+|...+.+..++ +.++++++.|++|+|||+.+++++ ++.+|...+. +++|
T Consensus 260 ~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf 334 (356)
T 2w18_A 260 FQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW 334 (356)
T ss_dssp EEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE
T ss_pred cEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE
Confidence 9999999876 444433 2444444444443 788999999999999999999988 6778877655 6899
Q ss_pred eCCCCEEEEEeCCCcEEEeC
Q 003840 773 STETGYVASASHDKFVKLWK 792 (792)
Q Consensus 773 spdg~~LaSgs~DG~I~IWd 792 (792)
+|||++|++|+.|++|||||
T Consensus 335 SPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEE
T ss_pred CCCCCEEEEEECCCcEEEec
Confidence 99999999999999999996
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.7e-27 Score=255.88 Aligned_cols=221 Identities=11% Similarity=0.058 Sum_probs=180.3
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC---------CCe
Q 003840 561 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN---------NGS 631 (792)
Q Consensus 561 ~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~---------~~~ 631 (792)
.+..++.+|++|+.||.|++||+.+ +..+..+. ...|.++.|+|+ +++++.|++|++|+.. +++
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~-~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKD-SKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNK 115 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESS-SSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCC-CcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcc
Confidence 3445778999999999999999997 55555554 466788889887 6799999999999665 555
Q ss_pred eEEEee----CCeeEEEEec--CCCEEEEEEcCCeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEE
Q 003840 632 CTRVFK----GGTAQMRFQP--HLGRYLAAAAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVR 703 (792)
Q Consensus 632 ~~~~~~----~~~~~v~~sp--~~~~lla~s~dg~I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~ 703 (792)
.+..+. ..+.+++|+| ++.++++++.|+.|++||+++++.+..+.. |...|.+++|+|++.+|++|+.| .|+
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 566665 6688999999 999999999999999999999988776643 56689999999999999999999 999
Q ss_pred EEECCCCCCcceE-EEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc---ccCCCeE--EEEEeCC
Q 003840 704 VWTVGSGSEGECV-HELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT---AHEGLIA--ALAVSTE 775 (792)
Q Consensus 704 IwDl~s~~~~~~i-~~~~~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~---~h~~~V~--sl~fspd 775 (792)
|||++++. .+ ..+.. |...|.+++|+|++.+|++++ ++.|+|||+++.+.+ .+. .|...+. +++|+|+
T Consensus 196 iwd~~~~~---~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (343)
T 3lrv_A 196 VYNLSSPD---QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS 271 (343)
T ss_dssp EEESSCTT---SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred EEECCCCC---CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence 99998873 33 55666 889999999999999999999 559999999988654 222 2444444 6999999
Q ss_pred CCEEEEEeC-CCcEEEeC
Q 003840 776 TGYVASASH-DKFVKLWK 792 (792)
Q Consensus 776 g~~LaSgs~-DG~I~IWd 792 (792)
+++|++++. |+.|+||+
T Consensus 272 g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp SSEEEEEETTTTEEEEEE
T ss_pred CCEEEEecCCCCcEEEEE
Confidence 999999998 99999994
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.6e-27 Score=281.95 Aligned_cols=210 Identities=18% Similarity=0.300 Sum_probs=180.2
Q ss_pred eeeeeeecCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEECCC--CCeEEEEeCCC
Q 003840 503 KEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPS--MPRLATSSFDK 576 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspd--g~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fspd--g~~Lasgs~Dg 576 (792)
+.+..+.+|.+.|++++|+++ +++|++|+.||.|++||+.+++ .+..+..|...|++++|+|+ +.+|++|+.||
T Consensus 44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 355678899999999999988 9999999999999999999887 77788899999999999999 99999999999
Q ss_pred cEEEEeCCCCC-ceeEEecccCCCeEEEEEcCC------------CCeEEEEEeCCCcEEEEEcCCC----eeEEEe---
Q 003840 577 TVRVWDADNPG-YSLRTFMGHSASVMSLDFHPN------------KDDLICSCDGDGEIRYWSINNG----SCTRVF--- 636 (792)
Q Consensus 577 ~V~IWdl~s~~-~~i~~~~~h~~~V~sl~fspd------------~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~--- 636 (792)
.|++||+.+.. .....+.+|...|.+++|+|. +..++++|+.||.|++||++++ .+...+
T Consensus 124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h 203 (753)
T 3jro_A 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (753)
T ss_dssp EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence 99999998742 345567789999999999995 2446779999999999999887 334444
Q ss_pred eCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCe-----EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 003840 637 KGGTAQMRFQPH---LGRYLAAAAENVVSILDAETQA-----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 707 (792)
Q Consensus 637 ~~~~~~v~~sp~---~~~lla~s~dg~I~i~D~~t~~-----~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl 707 (792)
...+.+++|+|+ +..+++++.||.|++||++++. .+.....|...|++++|+|++.+|++++.| .|++||+
T Consensus 204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 346788999999 8889999999999999998864 333345588899999999999999999998 9999999
Q ss_pred CCCCC
Q 003840 708 GSGSE 712 (792)
Q Consensus 708 ~s~~~ 712 (792)
..+..
T Consensus 284 ~~~~~ 288 (753)
T 3jro_A 284 NLEGK 288 (753)
T ss_dssp CSSSC
T ss_pred CCCCC
Confidence 86543
No 125
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=5e-25 Score=247.93 Aligned_cols=207 Identities=20% Similarity=0.398 Sum_probs=181.3
Q ss_pred eeeeeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCce-------eEEeccCCCCEEEEEECC-CCCeEEEEe
Q 003840 503 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKS-------KTNLEEHSSLITDVRFSP-SMPRLATSS 573 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~~-------~~~l~~h~~~V~~i~fsp-dg~~Lasgs 573 (792)
..+..+.+|...|++++|+|++. +|++|+.||.|+|||+.++.. ...+..|...|.+++|+| ++.+|++++
T Consensus 172 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~ 251 (430)
T 2xyi_A 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA 251 (430)
T ss_dssp CCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred CCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe
Confidence 45567889999999999999998 999999999999999987432 456778999999999999 677999999
Q ss_pred CCCcEEEEeCCCCC--ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEEee---CCeeEEEEec
Q 003840 574 FDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFK---GGTAQMRFQP 647 (792)
Q Consensus 574 ~Dg~V~IWdl~s~~--~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~~~---~~~~~v~~sp 647 (792)
.||.|++||+++.. ..+..+..|...|++|+|+|++.++|++|+.||.|++||++. ...+..+. ..+.+++|+|
T Consensus 252 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp 331 (430)
T 2xyi_A 252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 331 (430)
T ss_dssp TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence 99999999999753 567778899999999999999988899999999999999998 44455543 5688899999
Q ss_pred CCC-EEEEEEcCCeEEEEECCC--------------CeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCC
Q 003840 648 HLG-RYLAAAAENVVSILDAET--------------QACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGS 709 (792)
Q Consensus 648 ~~~-~lla~s~dg~I~i~D~~t--------------~~~~~~l~~h~~~V~sv~~spdg~-~Las~s~d-~I~IwDl~s 709 (792)
++. .+++++.|+.|+|||+.. ...+..+.+|...|++++|+|++. +|++++.| .|+||++..
T Consensus 332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 986 577888899999999987 367888889999999999999999 89999988 999999864
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=8.9e-25 Score=245.21 Aligned_cols=278 Identities=13% Similarity=0.113 Sum_probs=222.8
Q ss_pred CCcceec--cCCcceeeeeeeecCCCCeEEEEEcC--------------CCCEEEEEeCC------CeEEEEECCCCcee
Q 003840 490 GGRGMDV--SQGFSFKEANSVRASTSKVICCHFSS--------------DGKLLATGGHD------KKAVLWHTDTLKSK 547 (792)
Q Consensus 490 ~~~~~d~--~~~~~~~~~~~l~~H~~~V~~lafsp--------------dg~~Lasgs~D------g~I~vWdl~t~~~~ 547 (792)
..++||+ ..+.. .....+.+|...+.++++++ .+..|+.++.+ +.|++||++. ...
T Consensus 94 ~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~ 171 (415)
T 2hqs_A 94 AYQLVDTGGAPGTV-LAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQ 171 (415)
T ss_dssp EEEEEECSSSTTCE-EEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSC
T ss_pred EEEEEeCCCCCCCE-EeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCC
Confidence 5677887 55542 12256889999898888875 25666666654 7999999974 557
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCC---cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc--E
Q 003840 548 TNLEEHSSLITDVRFSPSMPRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--I 622 (792)
Q Consensus 548 ~~l~~h~~~V~~i~fspdg~~Lasgs~Dg---~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~--I 622 (792)
..+..|...|.+++|+|+|++|++++.|+ .|++||+.+ +.. ..+..|...+.+++|+|+++.++++++.|+. |
T Consensus 172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t-g~~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 249 (415)
T ss_dssp EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CcE-EEeecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence 78888999999999999999999999885 999999987 443 4566788899999999999988878877665 9
Q ss_pred EEEEcCCCeeEEEe--eCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 003840 623 RYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 697 (792)
Q Consensus 623 ~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~lla~s~d-g--~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~ 697 (792)
++||+.++++.... ...+..++|+|++.+|++++.+ + .|++||+.+++. ..+..+...+.+++|+|+|++|+++
T Consensus 250 ~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~ 328 (415)
T 2hqs_A 250 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMV 328 (415)
T ss_dssp EEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEE
Confidence 99999988765433 2346789999999999988864 4 788889988764 3455567789999999999999887
Q ss_pred eCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEE
Q 003840 698 SED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAAL 770 (792)
Q Consensus 698 s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~~~~h~~~V~sl 770 (792)
+.+ .|++||+.++. . ..+..+. .+.+++|+|++++|++++.++ .|++||+.++....+..|.+.|.++
T Consensus 329 ~~~~g~~~i~~~d~~~~~---~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~ 403 (415)
T 2hqs_A 329 SSNGGQQHIAKQDLATGG---V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFP 403 (415)
T ss_dssp EECSSCEEEEEEETTTCC---E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEE
T ss_pred ECcCCceEEEEEECCCCC---E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCC
Confidence 753 79999998763 2 3344443 889999999999999998877 8999999988888899999999999
Q ss_pred EEeCCCC
Q 003840 771 AVSTETG 777 (792)
Q Consensus 771 ~fspdg~ 777 (792)
+|+|...
T Consensus 404 ~~~~~~~ 410 (415)
T 2hqs_A 404 AWSPYLH 410 (415)
T ss_dssp EECCCCC
T ss_pred ccccccc
Confidence 9999754
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=1.5e-25 Score=249.41 Aligned_cols=204 Identities=16% Similarity=0.181 Sum_probs=157.9
Q ss_pred eeeeeecCCCCeEEEEEcC--------CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC-eEEEEeC
Q 003840 504 EANSVRASTSKVICCHFSS--------DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSF 574 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafsp--------dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~ 574 (792)
.+..+.+|.+.|.+++|+| |+++||+|+.|++|+|||+.++..+..+..|...|.+++|+|++. +|++++.
T Consensus 128 ~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 207 (393)
T 4gq1_A 128 VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER 207 (393)
T ss_dssp EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEET
T ss_pred eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCC
Confidence 4456789999999999998 899999999999999999999988888889999999999999875 8999999
Q ss_pred CCcEEEEeCCCCCcee------------------------EEecccCCCeEEEEEc-CCCCeEEEEEeCCCcEEEEEcCC
Q 003840 575 DKTVRVWDADNPGYSL------------------------RTFMGHSASVMSLDFH-PNKDDLICSCDGDGEIRYWSINN 629 (792)
Q Consensus 575 Dg~V~IWdl~s~~~~i------------------------~~~~~h~~~V~sl~fs-pd~~~ll~sgs~Dg~I~iwdl~~ 629 (792)
||+|+|||+.++.... ....+|...|.++.|. +++. .|++++.|+.|++||+..
T Consensus 208 d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~ 286 (393)
T 4gq1_A 208 NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFA 286 (393)
T ss_dssp TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC--
T ss_pred CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECcc
Confidence 9999999998743211 1123677889999997 5654 666999999999999987
Q ss_pred CeeEEEeeCC---------------------eeEEEEec-CCCEEE-EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEE
Q 003840 630 GSCTRVFKGG---------------------TAQMRFQP-HLGRYL-AAAAENVVSILDAETQACRLSLQGHTKPIDSVC 686 (792)
Q Consensus 630 ~~~~~~~~~~---------------------~~~v~~sp-~~~~ll-a~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~ 686 (792)
+.....+... .....+.+ .++.++ +++.|+.|++||+.+++.+..+..|..+|++|+
T Consensus 287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sva 366 (393)
T 4gq1_A 287 NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFC 366 (393)
T ss_dssp -----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEE
T ss_pred CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEE
Confidence 7654433211 11123333 344444 455699999999999988888888999999999
Q ss_pred EcCCCCEEEEEeCCeEEEEECC
Q 003840 687 WDPSGELLASVSEDSVRVWTVG 708 (792)
Q Consensus 687 ~spdg~~Las~s~d~I~IwDl~ 708 (792)
|+|||++||+++++.+.+|.+.
T Consensus 367 fspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 367 WHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp ECTTSSEEEEEESSEEEEEEEG
T ss_pred EcCCCCEEEEEeCCCeEEEEEe
Confidence 9999999999999988888764
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1e-24 Score=244.77 Aligned_cols=271 Identities=14% Similarity=0.158 Sum_probs=215.7
Q ss_pred CCeEEEEEcCCCC-EEEEEe----CCC----eEEEEEC--CCCcee--EEeccCCCCEEEEEECC--------------C
Q 003840 513 SKVICCHFSSDGK-LLATGG----HDK----KAVLWHT--DTLKSK--TNLEEHSSLITDVRFSP--------------S 565 (792)
Q Consensus 513 ~~V~~lafspdg~-~Lasgs----~Dg----~I~vWdl--~t~~~~--~~l~~h~~~V~~i~fsp--------------d 565 (792)
..|...+|++.|. ++++|+ .|| .|+|||+ .+++.+ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4577788888775 666776 467 8999999 898877 45888888888777764 2
Q ss_pred CCeEEEEeCC------CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC---cEEEEEcCCCeeEEEe
Q 003840 566 MPRLATSSFD------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG---EIRYWSINNGSCTRVF 636 (792)
Q Consensus 566 g~~Lasgs~D------g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg---~I~iwdl~~~~~~~~~ 636 (792)
+..|++++.+ +.|++||++. .....+..|...|.+++|+|+++.++ +++.|+ .|++||+.++++....
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g--~~~~~l~~~~~~v~~~~~Spdg~~la-~~s~~~~~~~i~~~d~~tg~~~~l~ 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRSPQPLMSPAWSPDGSKLA-YVTFESGRSALVIQTLANGAVRQVA 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS--CSCEEEEEESSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC--CCCEEEeCCCCcceeeEEcCCCCEEE-EEEecCCCcEEEEEECCCCcEEEee
Confidence 5566666554 7999999974 45677788999999999999988665 555554 9999999998876543
Q ss_pred --eCCeeEEEEecCCCEEEEE-EcCC--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEEC
Q 003840 637 --KGGTAQMRFQPHLGRYLAA-AAEN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTV 707 (792)
Q Consensus 637 --~~~~~~v~~sp~~~~lla~-s~dg--~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl 707 (792)
...+..++|+|++.+|+++ +.++ .|++||+++++. ..+..|...+.+++|+|||++|++++.+ .|++||+
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 3457789999999988854 4444 599999998876 5677788899999999999998887753 6888898
Q ss_pred CCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC
Q 003840 708 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 784 (792)
Q Consensus 708 ~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d---g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~ 784 (792)
.++. ...+..+...+..++|+|+|++|++++.+ ..|++||+.+++...+..+. .+.+++|+|||++|++++.
T Consensus 299 ~~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 299 NGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp TSSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred CCCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEc
Confidence 7653 23444566788999999999999998875 58999999999887777665 8999999999999999888
Q ss_pred CC---cEEEeC
Q 003840 785 DK---FVKLWK 792 (792)
Q Consensus 785 DG---~I~IWd 792 (792)
|+ .|++||
T Consensus 374 ~~~~~~l~~~d 384 (415)
T 2hqs_A 374 QGMGSVLNLVS 384 (415)
T ss_dssp ETTEEEEEEEE
T ss_pred CCCccEEEEEE
Confidence 77 688885
No 129
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=5e-23 Score=222.89 Aligned_cols=267 Identities=10% Similarity=0.036 Sum_probs=214.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEE-EeCCCcEEEEeC
Q 003840 512 TSKVICCHFSSDGKLLATGGH-------DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKTVRVWDA 583 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~-------Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Las-gs~Dg~V~IWdl 583 (792)
...+..++|+++|++|++++. ++.|.+||..+++.+..+... ..+.+++|+++++++++ +..++.|.+||+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 346889999999999988874 568999999999988888653 44788999999996555 455799999999
Q ss_pred CCCCceeEEecccCCC---------eEEEEEcCCCCeEEEEE-eCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCC
Q 003840 584 DNPGYSLRTFMGHSAS---------VMSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLG 650 (792)
Q Consensus 584 ~s~~~~i~~~~~h~~~---------V~sl~fspd~~~ll~sg-s~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~ 650 (792)
.+ +..+..+..+... +.+++|+|+++.+++++ +.++.|.+||+.+++.+..+. .....++|+|+++
T Consensus 119 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 119 KT-GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TT-CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CC-CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 87 5556666544322 78999999998877666 458899999999999888776 2367799999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEecC----CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCC
Q 003840 651 RYLAAAAENVVSILDAETQACRLSLQG----HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGN 724 (792)
Q Consensus 651 ~lla~s~dg~I~i~D~~t~~~~~~l~~----h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~ 724 (792)
+++++..++.|.+||..+++.+..+.. +...+.+++|+|++++|++++.+ .|.+||+.++ +.+..+....
T Consensus 198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~- 273 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE- 273 (353)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS-
T ss_pred EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC-
Confidence 999999999999999999988877764 45568889999999977776654 8999999876 4454444333
Q ss_pred ceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003840 725 KFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 785 (792)
Q Consensus 725 ~i~si~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~D 785 (792)
...++|+|+++++++++ .++.|.+||+.+++.+........+.+++|++|+++|+++..+
T Consensus 274 -~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 -SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred -CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 25689999999877777 5789999999999988555555678999999999977776655
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=4.4e-24 Score=229.15 Aligned_cols=219 Identities=11% Similarity=0.112 Sum_probs=167.7
Q ss_pred eeeeecCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe--CCCcE
Q 003840 505 ANSVRASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS--FDKTV 578 (792)
Q Consensus 505 ~~~l~~H~~~V~~lafspd----g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs--~Dg~V 578 (792)
+.--.-|...|.+++|+|| +.++++++.+ +.||++. +++++.+++ .|+.|
T Consensus 104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~----------------------~g~lv~ss~~g~d~~V 159 (356)
T 2w18_A 104 VALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT----------------------KRRLVSSSGTLSDQQV 159 (356)
T ss_dssp EEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEET----------------------TTEEEEEESSSTTCEE
T ss_pred eeeccccccceEEEEECCCccccccEEEeCCCe--EEEEecC----------------------CCcEEEecccCCCCcE
Confidence 3333455678999999999 9999998854 7778643 333444432 57888
Q ss_pred EEEeCCCCCceeEEecccCCCeEEEEEcC--CCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC------eeEEEEecCCC
Q 003840 579 RVWDADNPGYSLRTFMGHSASVMSLDFHP--NKDDLICSCDGDGEIRYWSINNGSCTRVFKGG------TAQMRFQPHLG 650 (792)
Q Consensus 579 ~IWdl~s~~~~i~~~~~h~~~V~sl~fsp--d~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~------~~~v~~sp~~~ 650 (792)
++|++...+..+..+..|...++.++|++ ++..+|++++.|++|+|||++++++++.+.++ +..++|+|++.
T Consensus 160 ~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~ 239 (356)
T 2w18_A 160 EVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGL 239 (356)
T ss_dssp EEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTE
T ss_pred EEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCC
Confidence 88888665677777888999999999988 23457789999999999999999999998752 34568999987
Q ss_pred EEE------------EEEcCCeEEEEECCCCeEEEEe-----cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC
Q 003840 651 RYL------------AAAAENVVSILDAETQACRLSL-----QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE 712 (792)
Q Consensus 651 ~ll------------a~s~dg~I~i~D~~t~~~~~~l-----~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~ 712 (792)
.++ +++.|++|++||..+++.+..+ .+|...+.+..++ +.++++++.| +|+|||+.++
T Consensus 240 ~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG-- 315 (356)
T 2w18_A 240 LFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG-- 315 (356)
T ss_dssp EEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC--
T ss_pred EEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC--
Confidence 763 4667899999999999887665 3676666555554 8899999988 9999999887
Q ss_pred cceEEEeecCCCceE-EEEEeCCCCEEEEEEcCCeEEEEEC
Q 003840 713 GECVHELSCNGNKFH-SCVFHPTYPSLLVIGCYQSLELWNM 752 (792)
Q Consensus 713 ~~~i~~~~~~~~~i~-si~fspdg~~L~sgs~dg~I~IwDl 752 (792)
+++..+.+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 316 -k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 -QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred -cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 78888888877655 5899999999999999999999996
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1.3e-23 Score=243.91 Aligned_cols=266 Identities=11% Similarity=0.060 Sum_probs=212.8
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC--CCCCceeEEeccc
Q 003840 519 HFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA--DNPGYSLRTFMGH 596 (792)
Q Consensus 519 afspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl--~s~~~~i~~~~~h 596 (792)
+|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+|++++|++++.|+.|++||+ .+ ...+..+. +
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-~~~~~~i~-~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKE-PTKVAEIK-I 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSS-CEEEEEEE-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCC-CcEEEEEe-c
Confidence 4889999999999999999999999999999984433 899999999999999999999999999 55 56666666 4
Q ss_pred CCCeEEEEEcC----CCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--------------CeeEEEEecCCCEEEEEE-c
Q 003840 597 SASVMSLDFHP----NKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------------GTAQMRFQPHLGRYLAAA-A 657 (792)
Q Consensus 597 ~~~V~sl~fsp----d~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------------~~~~v~~sp~~~~lla~s-~ 657 (792)
...+..++|+| +++.+++++..+++|.+||..+++++..+.. .+..+.+++++..+++.. .
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 56689999999 9987776666799999999999998887753 345688999888766655 4
Q ss_pred CCeEEEEECCCCeEEE--EecCCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCCCcceEEEeec----CCCceEEE
Q 003840 658 ENVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHELSC----NGNKFHSC 729 (792)
Q Consensus 658 dg~I~i~D~~t~~~~~--~l~~h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s~~~~~~i~~~~~----~~~~i~si 729 (792)
++.|.+||..+.+.+. .+. +...+.+++|+|+|++|++++. + +|.+||+.++ +++..+.. |......+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE
T ss_pred CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc
Confidence 7899999998865332 333 5667889999999998776653 4 9999999887 56665553 33333333
Q ss_pred EEeCCCCE-EEEEE-cCCeEEEEECCC-------CcEE-EEcccCCCeEEEEEeCCCCEEEEEe-------CCCcEEEeC
Q 003840 730 VFHPTYPS-LLVIG-CYQSLELWNMSE-------NKTM-TLTAHEGLIAALAVSTETGYVASAS-------HDKFVKLWK 792 (792)
Q Consensus 730 ~fspdg~~-L~sgs-~dg~I~IwDl~~-------~~~~-~~~~h~~~V~sl~fspdg~~LaSgs-------~DG~I~IWd 792 (792)
++|++.. ++++. .+++|.|||+.+ .+++ ++..|...+..++|+|++++|++++ .+++|.|||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 5787444 44444 478999999988 6776 7778888889999999999999987 277999996
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=1.4e-23 Score=252.07 Aligned_cols=270 Identities=10% Similarity=0.066 Sum_probs=203.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003840 513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 590 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i 590 (792)
..|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++. +.|++||+.+ +...
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~-g~~~ 185 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLAS-GRQM 185 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTT-TEEE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCC-CCEE
Confidence 34789999999999999986 999999999883 45567778889999999999999999874 5899999987 4444
Q ss_pred EEecccCCC----------------eEEEEEcCCCCeEEEEEeCCC---------------------------------c
Q 003840 591 RTFMGHSAS----------------VMSLDFHPNKDDLICSCDGDG---------------------------------E 621 (792)
Q Consensus 591 ~~~~~h~~~----------------V~sl~fspd~~~ll~sgs~Dg---------------------------------~ 621 (792)
.....+... +.+++|+||++.++++.. |+ .
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~-d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI-DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE-ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE-cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 433333332 478999999987775543 33 7
Q ss_pred EEEEEcCC-CeeEEEee-----CCeeEEEEecCCCEEEEEEc-----CCeEEEEECCCCeEEEEecCCCC----CeEEEE
Q 003840 622 IRYWSINN-GSCTRVFK-----GGTAQMRFQPHLGRYLAAAA-----ENVVSILDAETQACRLSLQGHTK----PIDSVC 686 (792)
Q Consensus 622 I~iwdl~~-~~~~~~~~-----~~~~~v~~sp~~~~lla~s~-----dg~I~i~D~~t~~~~~~l~~h~~----~V~sv~ 686 (792)
|++||+.+ ++...... ..+..++| |++..|++++. +..|++||+.++++...+..+.. .+.+++
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR 343 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence 89999998 87655432 23567899 99999988765 46899999999988776665443 456899
Q ss_pred EcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEE-EEeCCCCEEEEEEcC-C--eEEEEECCC-Cc-EEE
Q 003840 687 WDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC-VFHPTYPSLLVIGCY-Q--SLELWNMSE-NK-TMT 759 (792)
Q Consensus 687 ~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si-~fspdg~~L~sgs~d-g--~I~IwDl~~-~~-~~~ 759 (792)
|+|||+++++++.+ .++||.+.... . ...+..+...+..+ .|+|+++.|++.+.+ + .++||++.. +. ...
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~ 420 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQR 420 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEE
T ss_pred ECCCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeee
Confidence 99999988888877 67777765321 3 56677777778777 599999988766554 4 889998753 33 334
Q ss_pred EcccCCCeEEEEEeCCCCEEEEEeCC----CcEEEe
Q 003840 760 LTAHEGLIAALAVSTETGYVASASHD----KFVKLW 791 (792)
Q Consensus 760 ~~~h~~~V~sl~fspdg~~LaSgs~D----G~I~IW 791 (792)
+.. ...+.+++|+||+++|+....+ +.+.+|
T Consensus 421 l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 421 LSK-APGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp CCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred ccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 443 6778999999999988876543 345555
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=9.7e-24 Score=253.37 Aligned_cols=274 Identities=12% Similarity=0.109 Sum_probs=212.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CC-----eEEEEECCCCceeEEeccCCC------------------------CEEEEE
Q 003840 512 TSKVICCHFSSDGKLLATGGH-DK-----KAVLWHTDTLKSKTNLEEHSS------------------------LITDVR 561 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~-Dg-----~I~vWdl~t~~~~~~l~~h~~------------------------~V~~i~ 561 (792)
...|.+++|||||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456999999999999999998 88 899999999988777765433 388999
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCCCC-ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC-
Q 003840 562 FSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG- 639 (792)
Q Consensus 562 fspdg~~Lasgs~Dg~V~IWdl~s~~-~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~- 639 (792)
|+|||++|++++. +.|++||+.++. ..+..+..|...+.+++|+|||+.+++ ++ ++.|++||+.+++........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~-~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSF-IR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEE-EE-TTEEEEEETTTTEEEECCCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEE-Ee-CCcEEEEecCCCCEEEeccCCc
Confidence 9999999999987 899999998731 034556678888999999999986664 44 569999999998876654322
Q ss_pred ------------------eeEEEEecCCCEEEEEEcCC---------------------------------eEEEEECCC
Q 003840 640 ------------------TAQMRFQPHLGRYLAAAAEN---------------------------------VVSILDAET 668 (792)
Q Consensus 640 ------------------~~~v~~sp~~~~lla~s~dg---------------------------------~I~i~D~~t 668 (792)
...+.|+|++.+|++++.|+ .|++||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 36689999999999987765 889999998
Q ss_pred -CeEEEEec--CCCCCeEEEEEcCCCCEEEEEeC-----C-eEEEEECCCCCCcceEEEeecCCC----ceEEEEEeCCC
Q 003840 669 -QACRLSLQ--GHTKPIDSVCWDPSGELLASVSE-----D-SVRVWTVGSGSEGECVHELSCNGN----KFHSCVFHPTY 735 (792)
Q Consensus 669 -~~~~~~l~--~h~~~V~sv~~spdg~~Las~s~-----d-~I~IwDl~s~~~~~~i~~~~~~~~----~i~si~fspdg 735 (792)
++...... .|...+.+++| |||++|++++. + .|++||+.++. +...+..+.. .+..++|+|||
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---QRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---EEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---eEEEEEcCCCCcCCcCCceEECCCC
Confidence 87655443 36778999999 99999887653 3 79999998874 3333333222 34678999999
Q ss_pred CEEEEEEcCCeEEEEECC-CCcEEEEcccCCCeEEE-EEeCCCCEEEEE-eCCC--cEEEeC
Q 003840 736 PSLLVIGCYQSLELWNMS-ENKTMTLTAHEGLIAAL-AVSTETGYVASA-SHDK--FVKLWK 792 (792)
Q Consensus 736 ~~L~sgs~dg~I~IwDl~-~~~~~~~~~h~~~V~sl-~fspdg~~LaSg-s~DG--~I~IWd 792 (792)
+++++++.++.++||.+. ++....+..|...|..+ .|+||+++|+.. +.|+ .++||+
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred eEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 988888888876666554 23355677788888887 599999977654 4455 888984
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=1.2e-22 Score=218.52 Aligned_cols=272 Identities=9% Similarity=0.102 Sum_probs=201.1
Q ss_pred EEEcCCCCE-EEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCceeEEecc
Q 003840 518 CHFSSDGKL-LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMG 595 (792)
Q Consensus 518 lafspdg~~-Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~-Dg~V~IWdl~s~~~~i~~~~~ 595 (792)
..|..++++ +++++.++.|.+||+++++.+..+..+...+ +++|+|++++|++++. ++.|++||+.+.......+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345665555 6677789999999999999988888777777 9999999997766665 889999999874332666666
Q ss_pred cCCCeEEEEEcCCCCeEEEEEeCC-C--cEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEc-CCe-EEEEECCC
Q 003840 596 HSASVMSLDFHPNKDDLICSCDGD-G--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENV-VSILDAET 668 (792)
Q Consensus 596 h~~~V~sl~fspd~~~ll~sgs~D-g--~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~-dg~-I~i~D~~t 668 (792)
+...+.+++|+|+++.++ ++..+ + .|++||+.+++.+..+.. ....++|+|+++++++++. ++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 666666699999988776 54444 3 899999999998877653 4578999999987776654 577 99999876
Q ss_pred CeEE----EEecCCCCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003840 669 QACR----LSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 742 (792)
Q Consensus 669 ~~~~----~~l~~h~~~V~sv~~spdg~~Las~s-~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs 742 (792)
...+ .........+.+++|+|+|++|++++ .+ .|++||+.++.....+..+.. ...+..++|+|++++|++++
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEEC
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEE
Confidence 4322 12223445689999999999766655 44 899999987754222555553 45678899999999887776
Q ss_pred c-CCeEEEEECCCCcEEE---Eccc----C---CCeEEEEEeCCCCEEEEEeC-CCcEEEeC
Q 003840 743 C-YQSLELWNMSENKTMT---LTAH----E---GLIAALAVSTETGYVASASH-DKFVKLWK 792 (792)
Q Consensus 743 ~-dg~I~IwDl~~~~~~~---~~~h----~---~~V~sl~fspdg~~LaSgs~-DG~I~IWd 792 (792)
. ++.|.+||+.+++... +..+ . ..+.+++|+||+++|++++. ++.|+|||
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 4 5789999999988731 1111 1 22356899999998876655 56999996
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=9.3e-23 Score=219.27 Aligned_cols=265 Identities=11% Similarity=0.137 Sum_probs=191.8
Q ss_pred EEEEEeCCCeEEEEECC-CCce-eEEeccCCCCEEEEEECCCCCeEEEEeCC-CcEEEEeCC--CCC-ceeEEecccCCC
Q 003840 526 LLATGGHDKKAVLWHTD-TLKS-KTNLEEHSSLITDVRFSPSMPRLATSSFD-KTVRVWDAD--NPG-YSLRTFMGHSAS 599 (792)
Q Consensus 526 ~Lasgs~Dg~I~vWdl~-t~~~-~~~l~~h~~~V~~i~fspdg~~Lasgs~D-g~V~IWdl~--s~~-~~i~~~~~h~~~ 599 (792)
++++++.|+.|++||++ ++.. ......+...+.+++|+|++++|++++.+ +.|++|+++ ++. ..+..+..+. .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 34444789999999996 3322 22223577789999999999999888886 999999998 322 1233444333 7
Q ss_pred eEEEEEcCCCCeEEEEEeCCCcEEEEEcC---CCeeEEEee--CCeeEEEEecCCCEEEEEE-cCCeEEEEECCC-CeEE
Q 003840 600 VMSLDFHPNKDDLICSCDGDGEIRYWSIN---NGSCTRVFK--GGTAQMRFQPHLGRYLAAA-AENVVSILDAET-QACR 672 (792)
Q Consensus 600 V~sl~fspd~~~ll~sgs~Dg~I~iwdl~---~~~~~~~~~--~~~~~v~~sp~~~~lla~s-~dg~I~i~D~~t-~~~~ 672 (792)
+.+++|+|++..+++++..++.|++||+. ..+.+..+. ..+..++|+|++.++++++ .++.|.+||+.+ ++..
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 88999999998888777779999999994 334444443 3467799999999998888 799999999987 6543
Q ss_pred E----EecC-CCCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCC-CCcceEEEee---cC---CCceEEEEEeCCCCEE
Q 003840 673 L----SLQG-HTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSG-SEGECVHELS---CN---GNKFHSCVFHPTYPSL 738 (792)
Q Consensus 673 ~----~l~~-h~~~V~sv~~spdg~~Las~s-~d-~I~IwDl~s~-~~~~~i~~~~---~~---~~~i~si~fspdg~~L 738 (792)
. .+.. ....+.+++|+|++++|++++ .+ .|++||+... .....+..+. .. ...+..++|+|++++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l 245 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 245 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE
Confidence 2 2222 345788999999999776665 45 9999999642 1122222222 11 2356789999999988
Q ss_pred EEEE-cCCeEEEEECC--CCc--EE-EEcccCCCeEEEEEeCCCCEEEEEe-CCCcEEEeC
Q 003840 739 LVIG-CYQSLELWNMS--ENK--TM-TLTAHEGLIAALAVSTETGYVASAS-HDKFVKLWK 792 (792)
Q Consensus 739 ~sgs-~dg~I~IwDl~--~~~--~~-~~~~h~~~V~sl~fspdg~~LaSgs-~DG~I~IWd 792 (792)
++++ .++.|++||+. ++. .+ .+..+. .+.+++|+|++++|++++ .|+.|.||+
T Consensus 246 ~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 246 YACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 8666 67899999998 332 33 233333 489999999999888887 589999993
No 136
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=3.8e-23 Score=258.43 Aligned_cols=289 Identities=10% Similarity=0.028 Sum_probs=229.4
Q ss_pred CCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEeccCCCCEEEEEECCCCC
Q 003840 489 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMP 567 (792)
Q Consensus 489 ~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t-~~~~~~l~~h~~~V~~i~fspdg~ 567 (792)
...++|....+ .....+.+|...|.+++|+++ .++++++.|+.+.||.++. +.....+..|. .+.+++|+|||+
T Consensus 183 ~~~~lw~~~~~---~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~ 257 (1045)
T 1k32_A 183 TRGKIWIEVNS---GAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGR 257 (1045)
T ss_dssp TCCEEEEEEET---TEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSS
T ss_pred CcCCEEEECCC---CCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCC
Confidence 34555554333 344556899999999999998 6777888889999998753 44556666665 467789999999
Q ss_pred eEEEEeCCCcEEEEeCCCCCceeEEecc-----------cCCCeEEEEEc-CCCCeEEEEEeCCCcEEEEEcCCCeeEEE
Q 003840 568 RLATSSFDKTVRVWDADNPGYSLRTFMG-----------HSASVMSLDFH-PNKDDLICSCDGDGEIRYWSINNGSCTRV 635 (792)
Q Consensus 568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~-----------h~~~V~sl~fs-pd~~~ll~sgs~Dg~I~iwdl~~~~~~~~ 635 (792)
+|+++ .++.|++||+.. ..+..+.. |...|.+++|+ |++..+++++ ++.|++|++..+.....
T Consensus 258 ~la~~-~~~~i~~~d~~~--~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~ 332 (1045)
T 1k32_A 258 RILFS-KGGSIYIFNPDT--EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKV 332 (1045)
T ss_dssp CEEEE-ETTEEEEECTTT--CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEEC
T ss_pred EEEEE-eCCEEEEecCCc--eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEc
Confidence 99888 488999999943 33335444 34468999999 9988776544 88999999988775543
Q ss_pred ee--C-CeeEEEEecCCCEEEEEEcCCeEE-EEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003840 636 FK--G-GTAQMRFQPHLGRYLAAAAENVVS-ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 710 (792)
Q Consensus 636 ~~--~-~~~~v~~sp~~~~lla~s~dg~I~-i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~ 710 (792)
.. . .+..+.|+ ++..+++++.++.|. +||+.+++.... .+|...+.+++|+|||++|++++.+ .|++||+.++
T Consensus 333 ~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg 410 (1045)
T 1k32_A 333 PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG 410 (1045)
T ss_dssp SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC
Confidence 22 2 45668899 888899888888898 999988766543 3788899999999999999999988 9999999876
Q ss_pred CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC----------eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEE
Q 003840 711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----------SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVA 780 (792)
Q Consensus 711 ~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg----------~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~La 780 (792)
.....+..+...+..++|+|||++|++++.++ .|++||+.+++...+..|...+.+++|+|||++|+
T Consensus 411 ---~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~ 487 (1045)
T 1k32_A 411 ---KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLY 487 (1045)
T ss_dssp ---CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEE
T ss_pred ---ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEE
Confidence 44555556778889999999999999887754 89999999998778888999999999999999999
Q ss_pred EEeCCCcEEEeC
Q 003840 781 SASHDKFVKLWK 792 (792)
Q Consensus 781 Sgs~DG~I~IWd 792 (792)
+++.++..++|+
T Consensus 488 ~~s~~~~~~~~~ 499 (1045)
T 1k32_A 488 YLSYRSLDPSPD 499 (1045)
T ss_dssp EEESCCCCCEEC
T ss_pred EEecccCCcCcc
Confidence 999988877774
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=5.8e-22 Score=213.15 Aligned_cols=262 Identities=13% Similarity=0.116 Sum_probs=192.8
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCce-eEEeccCCCCEEEEEECCCCCeEEEEeCCC---cEEEEeCC
Q 003840 510 ASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSMPRLATSSFDK---TVRVWDAD 584 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~-Dg~I~vWdl~t~~~-~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg---~V~IWdl~ 584 (792)
.+...+ +++|+|||++|++++. ++.|++||+.+++. ...+..+...+.+++|+|++++|+++..++ .|++||+.
T Consensus 38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~ 116 (331)
T 3u4y_A 38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL 116 (331)
T ss_dssp CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT
T ss_pred ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC
Confidence 344556 9999999997777665 89999999999988 777777777666699999999999665553 89999998
Q ss_pred CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc-EEEEEcCCCeeEE-----Ee--eCCeeEEEEecCCCEEEEEE
Q 003840 585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTR-----VF--KGGTAQMRFQPHLGRYLAAA 656 (792)
Q Consensus 585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~-I~iwdl~~~~~~~-----~~--~~~~~~v~~sp~~~~lla~s 656 (792)
+ +..+..+.. ...+.+++|+|+++.+++++..++. |.+|++.....+. .+ ......++|+|+++++++++
T Consensus 117 ~-~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 194 (331)
T 3u4y_A 117 K-NKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVAN 194 (331)
T ss_dssp T-TEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEE
T ss_pred C-CCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEe
Confidence 7 555555553 4557899999999888888887788 9999998644321 11 13467799999999877766
Q ss_pred c-CCeEEEEECCCCeE---EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecC----CCc-
Q 003840 657 A-ENVVSILDAETQAC---RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN----GNK- 725 (792)
Q Consensus 657 ~-dg~I~i~D~~t~~~---~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~----~~~- 725 (792)
. ++.|.+||+++++. +..+.. ...+.+++|+|+|++|++++.+ .|.+||+.++.. ..+..+... ...
T Consensus 195 ~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~ 272 (331)
T 3u4y_A 195 LIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPL 272 (331)
T ss_dssp TTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCGGG
T ss_pred CCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCCCc
Confidence 4 78999999998887 776664 3667889999999988776654 899999987632 123333322 112
Q ss_pred --eEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEEcccCCCeEEEEEeCCC
Q 003840 726 --FHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTET 776 (792)
Q Consensus 726 --i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg 776 (792)
...++|+|++++|++++.+ +.|.+||+.+.....+...+..-....++|++
T Consensus 273 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 273 FGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp TTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTTCCCBSCEEECCCC-
T ss_pred ccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceecccccCCeEEECCcc
Confidence 2458999999998877765 59999999887665554444333333344443
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=7.6e-23 Score=214.08 Aligned_cols=255 Identities=12% Similarity=0.077 Sum_probs=192.4
Q ss_pred CCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEeccC-CCCEEEEEEC
Q 003840 486 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEH-SSLITDVRFS 563 (792)
Q Consensus 486 ~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t-~~~~~~l~~h-~~~V~~i~fs 563 (792)
..+..+.+|++..+ ....+..|...|.+++|+|||++|++++ ++.|++||+.+ ++....+..+ ...|.+++|+
T Consensus 19 ~~~~~i~~~d~~~~----~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 19 SMRSSIEIFNIRTR----KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp CCCEEEEEEETTTT----EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred CcceeEEEEeCCCC----ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 34455566766554 2345667889999999999999999987 88999999999 8877766665 4778999999
Q ss_pred CCCCeEEEEe--CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCee
Q 003840 564 PSMPRLATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 641 (792)
Q Consensus 564 pdg~~Lasgs--~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~ 641 (792)
|++++|++++ .++.+.||.++........+..+. .+.+++|+|++..++++++.|+.+++|+++..
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~----------- 161 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID----------- 161 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETT-----------
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECC-----------
Confidence 9999999998 445566666543333445555443 48899999999888878888888888875321
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCCCcceEEEe
Q 003840 642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHEL 719 (792)
Q Consensus 642 ~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s~~~~~~i~~~ 719 (792)
+++ ...+..+...+.+++|+|++++|++++. + .++||++.... ..+..+
T Consensus 162 --------------------------~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~ 212 (297)
T 2ojh_A 162 --------------------------SGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERI 212 (297)
T ss_dssp --------------------------TCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEEC
T ss_pred --------------------------CCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEE
Confidence 111 1223346677899999999998887664 5 88888876321 345666
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcC-----------CeEEEEECCCCcEE---EEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003840 720 SCNGNKFHSCVFHPTYPSLLVIGCY-----------QSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHD 785 (792)
Q Consensus 720 ~~~~~~i~si~fspdg~~L~sgs~d-----------g~I~IwDl~~~~~~---~~~~h~~~V~sl~fspdg~~LaSgs~D 785 (792)
..+...+..++|+|++++|++++.+ +.|++||+.+++.. .+.+|...|.+++|+|++++|++++.|
T Consensus 213 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 213 TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 6677788999999999999988876 46999999988754 344788899999999999999888776
Q ss_pred C
Q 003840 786 K 786 (792)
Q Consensus 786 G 786 (792)
.
T Consensus 293 ~ 293 (297)
T 2ojh_A 293 P 293 (297)
T ss_dssp C
T ss_pred c
Confidence 4
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=5.8e-22 Score=213.06 Aligned_cols=285 Identities=11% Similarity=0.064 Sum_probs=199.2
Q ss_pred CCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEECC--CCc--eeEEeccCCCCEEEEEEC
Q 003840 489 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-KKAVLWHTD--TLK--SKTNLEEHSSLITDVRFS 563 (792)
Q Consensus 489 ~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~D-g~I~vWdl~--t~~--~~~~l~~h~~~V~~i~fs 563 (792)
..+.+|++.....++.+.. ..|...+.+++|+|+|++|++++.+ +.|.+|+++ +++ .+..+..+. .+.+++|+
T Consensus 15 ~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s 92 (343)
T 1ri6_A 15 QQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTD 92 (343)
T ss_dssp TEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEEC
T ss_pred CeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEc
Confidence 3455666643333333333 3477789999999999999998886 999999997 554 334454444 78999999
Q ss_pred CCCCeEEEEeC-CCcEEEEeCCCC--CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEE----E
Q 003840 564 PSMPRLATSSF-DKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTR----V 635 (792)
Q Consensus 564 pdg~~Lasgs~-Dg~V~IWdl~s~--~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~----~ 635 (792)
|++++|++++. ++.|++||+..+ ...+..+. ....+.+++|+|+++.+++++..++.|++||+.+ ++... .
T Consensus 93 ~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 171 (343)
T 1ri6_A 93 HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE 171 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred CCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccc
Confidence 99998877665 888999999521 22333443 3446889999999987776665899999999987 65432 1
Q ss_pred ee----CCeeEEEEecCCCEEEEEE-cCCeEEEEECCC--CeE--EEEec---CC---CCCeEEEEEcCCCCEEEEEe-C
Q 003840 636 FK----GGTAQMRFQPHLGRYLAAA-AENVVSILDAET--QAC--RLSLQ---GH---TKPIDSVCWDPSGELLASVS-E 699 (792)
Q Consensus 636 ~~----~~~~~v~~sp~~~~lla~s-~dg~I~i~D~~t--~~~--~~~l~---~h---~~~V~sv~~spdg~~Las~s-~ 699 (792)
+. .....++|+|++.++++++ .++.|.+||++. ++. ...+. .. ...+.+++|+|+|++|+++. .
T Consensus 172 ~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~ 251 (343)
T 1ri6_A 172 VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT 251 (343)
T ss_dssp EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred cccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC
Confidence 21 2456789999999887776 689999999954 332 22222 11 23567899999999887555 4
Q ss_pred C-eEEEEECCCC-CCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--ECCCCcEE--EEcccCCCeEEEEE
Q 003840 700 D-SVRVWTVGSG-SEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELW--NMSENKTM--TLTAHEGLIAALAV 772 (792)
Q Consensus 700 d-~I~IwDl~s~-~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~Iw--Dl~~~~~~--~~~~h~~~V~sl~f 772 (792)
+ .|++||+... .....+..+..+.. +..++|+|++++|++++ .++.|.+| |..+++.. ..........+++|
T Consensus 252 ~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~ 330 (343)
T 1ri6_A 252 ASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVV 330 (343)
T ss_dssp TTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEE
T ss_pred CCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEE
Confidence 5 9999999732 22345555554444 88999999999999888 57899999 44566543 22222345678888
Q ss_pred eCCCC
Q 003840 773 STETG 777 (792)
Q Consensus 773 spdg~ 777 (792)
.++.+
T Consensus 331 ~~~~~ 335 (343)
T 1ri6_A 331 NAHEG 335 (343)
T ss_dssp EEEC-
T ss_pred EcccC
Confidence 77654
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=4e-22 Score=213.78 Aligned_cols=260 Identities=12% Similarity=0.090 Sum_probs=202.8
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEeccCCC--CEEEEEECCCCCeE-EEEeCCCcEEEEeCCCCCceeEEecc-c----
Q 003840 525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSS--LITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMG-H---- 596 (792)
Q Consensus 525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~--~V~~i~fspdg~~L-asgs~Dg~V~IWdl~s~~~~i~~~~~-h---- 596 (792)
++|++++.++.|++||+.+++.+..+..... .+.+++|+|++++| ++++.++.|.+||+.+ +..+..+.. +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEcCCcccc
Confidence 4789999999999999999998888764332 48899999999866 4556678999999987 455554442 2
Q ss_pred CCCeEEEEEcCCCCeEEEEEe-----------CCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEcCCeEEE
Q 003840 597 SASVMSLDFHPNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSI 663 (792)
Q Consensus 597 ~~~V~sl~fspd~~~ll~sgs-----------~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~dg~I~i 663 (792)
...+.+++|+|+++.++++.. .++.|++||+.+++.+..+.. ....++|+|++++++++ ++.|++
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 225778999999887665431 479999999999988777653 45678999999988887 689999
Q ss_pred EECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------------------------eEEEEECCCCCCcceEEE
Q 003840 664 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------------------------SVRVWTVGSGSEGECVHE 718 (792)
Q Consensus 664 ~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-------------------------~I~IwDl~s~~~~~~i~~ 718 (792)
||+.+++.+..+..+.. ...+.|+|++++|+..+.+ .|.+||+.+++.. ...
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--Eee
Confidence 99999998877765431 1123789999877655433 2689999876432 334
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 719 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 719 ~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+..+...+..++|+|++++|+++ ++.|++||+.+++.+........+.+++|+||+++|++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 45566678899999999999888 6899999999998875554556789999999999999999999999996
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=2.8e-22 Score=250.55 Aligned_cols=287 Identities=10% Similarity=0.089 Sum_probs=225.4
Q ss_pred CCcceeccCCcceeeeeeeecCCCCe-------EEEEEcCCCCEEEEEeCC------CeEEEEECCCCcee---------
Q 003840 490 GGRGMDVSQGFSFKEANSVRASTSKV-------ICCHFSSDGKLLATGGHD------KKAVLWHTDTLKSK--------- 547 (792)
Q Consensus 490 ~~~~~d~~~~~~~~~~~~l~~H~~~V-------~~lafspdg~~Lasgs~D------g~I~vWdl~t~~~~--------- 547 (792)
.+.+|++..+ ....+..|...+ .+++|+|||+++++++.+ ..|++||+.+++..
T Consensus 81 ~i~~~d~~~g----~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~ 156 (1045)
T 1k32_A 81 DLYFYNGENG----EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATH 156 (1045)
T ss_dssp EEEEEETTTT----EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSE
T ss_pred eEEEEECCCC----CeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcce
Confidence 3455665543 356788898888 999999999977777754 45888887654422
Q ss_pred ----------------------------------------EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003840 548 ----------------------------------------TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 587 (792)
Q Consensus 548 ----------------------------------------~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~ 587 (792)
..+.+|...+.++.|+++ .++++++.|+.+.||+++..+
T Consensus 157 ~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g 235 (1045)
T 1k32_A 157 ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDG 235 (1045)
T ss_dssp EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTS
T ss_pred eeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCC
Confidence 123456778889999888 677778888999999887545
Q ss_pred ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--------------CeeEEEEe-cCCCEE
Q 003840 588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------------GTAQMRFQ-PHLGRY 652 (792)
Q Consensus 588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------------~~~~v~~s-p~~~~l 652 (792)
.....+..|. .+..++|+|++..++++ .++.|++||+...... .+.. .+..++|+ |++..+
T Consensus 236 ~~~~~l~~~~-~~~~~~~SpDG~~la~~--~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~l 311 (1045)
T 1k32_A 236 KDLRKHTSFT-DYYPRHLNTDGRRILFS--KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLI 311 (1045)
T ss_dssp CSCEECCCCC-SSCEEEEEESSSCEEEE--ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCE
T ss_pred CcceEecCCC-CcceeeEcCCCCEEEEE--eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEE
Confidence 5566666665 46678999999876644 4899999999554443 4443 47889999 999888
Q ss_pred EEEEcCCeEEEEECCCCeEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC-eEE-EEECCCCCCcceEEEeecCCCceEEE
Q 003840 653 LAAAAENVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED-SVR-VWTVGSGSEGECVHELSCNGNKFHSC 729 (792)
Q Consensus 653 la~s~dg~I~i~D~~t~~~~~~l~~h~~-~V~sv~~spdg~~Las~s~d-~I~-IwDl~s~~~~~~i~~~~~~~~~i~si 729 (792)
++++ ++.|++|++.++.... +..|.. .+.+++|+ ||+.|++++.+ .|. +||+..+ . ...+..+...+..+
T Consensus 312 a~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~---~-~~~l~~~~~~~~~~ 384 (1045)
T 1k32_A 312 AFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG---K-AEKFEENLGNVFAM 384 (1045)
T ss_dssp EEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC---C-EEECCCCCCSEEEE
T ss_pred EEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC---C-ceEecCCccceeee
Confidence 8877 8899999998887554 566777 89999999 99999998888 888 9998765 2 23344667789999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc-ccCCCeEEEEEeCCCCEEEEEeCCC----------cEEEeC
Q 003840 730 VFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-AHEGLIAALAVSTETGYVASASHDK----------FVKLWK 792 (792)
Q Consensus 730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~-~h~~~V~sl~fspdg~~LaSgs~DG----------~I~IWd 792 (792)
+|+|||++|++++.++.|++||+.+++...+. .|...|.+++|+|||++|++++.++ .|++||
T Consensus 385 ~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 385 GVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred EECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 99999999999999999999999999887554 8999999999999999999887754 899996
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=1.2e-22 Score=242.90 Aligned_cols=268 Identities=9% Similarity=0.081 Sum_probs=189.6
Q ss_pred CeEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCceeEEec---cCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 514 KVICCHFSSDGKLLATGGHD---------KKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~D---------g~I~vWdl~t~~~~~~l~---~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
.|.+++|||||++||+++.+ +.|++||+++++. ..+. .|...+.+++|+|||++|++++. +.|++|
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence 48899999999999999864 7888999998876 3333 45556899999999999999986 789999
Q ss_pred eCCCCCceeEEecccCCC------------------eEEEEEcCCCCeEEEEEeCC------------------------
Q 003840 582 DADNPGYSLRTFMGHSAS------------------VMSLDFHPNKDDLICSCDGD------------------------ 619 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~------------------V~sl~fspd~~~ll~sgs~D------------------------ 619 (792)
|+.+ +........+... +.+++|+||++.++++...+
T Consensus 140 ~~~~-g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (723)
T 1xfd_A 140 AHVG-KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY 218 (723)
T ss_dssp SSSS-SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred ECCC-CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccC
Confidence 9987 4444444443333 37899999998776554322
Q ss_pred ---------CcEEEEEcCCCeeEEEeeC---------CeeEEEEecCCCEEEEEEc----CCeEEEEECCCCeEEEEecC
Q 003840 620 ---------GEIRYWSINNGSCTRVFKG---------GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQG 677 (792)
Q Consensus 620 ---------g~I~iwdl~~~~~~~~~~~---------~~~~v~~sp~~~~lla~s~----dg~I~i~D~~t~~~~~~l~~ 677 (792)
..|++||+.++++...+.. .+..+.|+|++..+++... +..|++||+.++++...+..
T Consensus 219 ~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 298 (723)
T 1xfd_A 219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED 298 (723)
T ss_dssp CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred CCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe
Confidence 2799999998876554442 3456899999987766654 25899999999987766543
Q ss_pred -CCCCeE----EEEEcCCCCEEEEE-e-CC-------eEEEEECCCCCCcceEEEeecCCCceEE-EEEeCCCCEEEEEE
Q 003840 678 -HTKPID----SVCWDPSGELLASV-S-ED-------SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIG 742 (792)
Q Consensus 678 -h~~~V~----sv~~spdg~~Las~-s-~d-------~I~IwDl~s~~~~~~i~~~~~~~~~i~s-i~fspdg~~L~sgs 742 (792)
+...+. .++|+|||++|+.. + .+ .|++||+..+....+...+......+.. ++|+||+++|++.+
T Consensus 299 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~ 378 (723)
T 1xfd_A 299 ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLS 378 (723)
T ss_dssp ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEE
T ss_pred ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEE
Confidence 344443 78999999977654 3 22 3777773222220012333333334444 69999999998777
Q ss_pred cC---CeEEEEECCCC---cEEEEcc---cCCCeEEEEEeCCCCEEEEEeC
Q 003840 743 CY---QSLELWNMSEN---KTMTLTA---HEGLIAALAVSTETGYVASASH 784 (792)
Q Consensus 743 ~d---g~I~IwDl~~~---~~~~~~~---h~~~V~sl~fspdg~~LaSgs~ 784 (792)
.+ +.++||++... +...+.. |...+..++|+|||++|+....
T Consensus 379 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 379 TEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp SSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred cCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 66 78899987643 2223333 6777999999999998876543
No 143
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=2.3e-22 Score=234.92 Aligned_cols=267 Identities=9% Similarity=0.070 Sum_probs=206.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeEEeccCC-CCEEEEEECCCCCeEEEEeC---CCcEEEEeCCC-
Q 003840 512 TSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSF---DKTVRVWDADN- 585 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~-Dg~I~vWdl~t~~~~~~l~~h~-~~V~~i~fspdg~~Lasgs~---Dg~V~IWdl~s- 585 (792)
..+|++++|+|||++||+++. ||++.||++++++.. .+..|. ..|..++|+|| +++++++. +...+||.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 456999999999999999887 999999999766554 444454 68999999999 77777765 45566665543
Q ss_pred -CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcC----Ce
Q 003840 586 -PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE----NV 660 (792)
Q Consensus 586 -~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~d----g~ 660 (792)
.+... .+... ..+..++|+|+++.++++.+.++.+.+||+.++++..........+.|+|++..+++++.+ ..
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~ 176 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVS 176 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEE
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeE
Confidence 33333 33322 2345778999988766666666667799999998877666555889999999999988876 78
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEeecCCCceEEEE-------
Q 003840 661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHSCV------- 730 (792)
Q Consensus 661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~~~~~~i~~~~~~~~~i~si~------- 730 (792)
|++||+.+++.. .+..|...+..++|+|||++|+++..+ .|++||+.++ ... .+..+...+..++
T Consensus 177 i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 177 LFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp EEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred EEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhccccce
Confidence 999999988765 567788889999999999999976655 6999999876 333 5555666666666
Q ss_pred -EeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCc---EEEeC
Q 003840 731 -FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF---VKLWK 792 (792)
Q Consensus 731 -fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~---I~IWd 792 (792)
|+|||..+++++.++.++||++ ++... ...+.|.+++|+ +++++++++.+.. |++||
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999988889999999999999 65543 345678999999 9999998887744 66654
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=9.2e-22 Score=234.93 Aligned_cols=275 Identities=12% Similarity=0.105 Sum_probs=203.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC----
Q 003840 511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP---- 586 (792)
Q Consensus 511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~---- 586 (792)
+...|.+++|+|| ++++.+. ++.|++||+.+++... +..+...+.+++|+|||++|+++ .|+.|++||+.+.
T Consensus 80 ~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 80 DAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp --CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred cccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence 3456999999999 6666664 5999999999886544 44567778999999999999985 6899999999861
Q ss_pred CceeEEecccCCC--------------eEEEEEcCCCCeEEEEEe--------------------------------CCC
Q 003840 587 GYSLRTFMGHSAS--------------VMSLDFHPNKDDLICSCD--------------------------------GDG 620 (792)
Q Consensus 587 ~~~i~~~~~h~~~--------------V~sl~fspd~~~ll~sgs--------------------------------~Dg 620 (792)
+........+... +.+++|+||++.++++.. .+.
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 2333333333332 489999999987765541 346
Q ss_pred cEEEEEcCCCeeEEEee-----CCeeEEEEecCCCEEEEEEcCC-----eEEEEECCCC-eEEEEec-CCCC---CeEEE
Q 003840 621 EIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAAEN-----VVSILDAETQ-ACRLSLQ-GHTK---PIDSV 685 (792)
Q Consensus 621 ~I~iwdl~~~~~~~~~~-----~~~~~v~~sp~~~~lla~s~dg-----~I~i~D~~t~-~~~~~l~-~h~~---~V~sv 685 (792)
.|++||+.+++...... ..+..++|+|+++.+++++.++ .|++||+.++ .....+. .+.. .+.++
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence 79999999988765542 2356799999999999888765 9999999998 4333332 2222 24678
Q ss_pred EEcC--CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEE-EEEeCCCCEEEEEEcCC-----eEEEEECCCCc
Q 003840 686 CWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCYQ-----SLELWNMSENK 756 (792)
Q Consensus 686 ~~sp--dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~s-i~fspdg~~L~sgs~dg-----~I~IwDl~~~~ 756 (792)
+|+| ||++|++++.+ .++||++.. ....+..+..+...+.. ++|+|+++.|++++.+. .|+.||+.+++
T Consensus 316 ~~sp~~dg~~l~~~~~~g~~~l~~~~~--~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 316 TFLPGSNNQFIWQSRRDGWNHLYLYDT--TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EECTTCSSEEEEEECTTSSCEEEEEET--TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred eeecCCCCEEEEEEccCCccEEEEEEC--CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 9999 99999988877 788887752 12456666666666776 79999999888776653 67788888776
Q ss_pred EEEEcccCCCeEEEEEeCCCCEEEEEeCC----CcEEEeC
Q 003840 757 TMTLTAHEGLIAALAVSTETGYVASASHD----KFVKLWK 792 (792)
Q Consensus 757 ~~~~~~h~~~V~sl~fspdg~~LaSgs~D----G~I~IWd 792 (792)
...+ .|...+.+++|+|||++|+.++.+ +.|++||
T Consensus 394 ~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 394 TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 4444 477789999999999988876554 4599985
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=4.5e-23 Score=246.70 Aligned_cols=271 Identities=14% Similarity=0.134 Sum_probs=203.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC---CEEEEEECCCCCeEEEEeCC---------CcEEEE
Q 003840 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS---LITDVRFSPSMPRLATSSFD---------KTVRVW 581 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~---~V~~i~fspdg~~Lasgs~D---------g~V~IW 581 (792)
.+.+++|+|||+++++ +.||.|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999998776 7899999999999998888887765 49999999999999999774 778899
Q ss_pred eCCCCCceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---e---------------
Q 003840 582 DADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---T--------------- 640 (792)
Q Consensus 582 dl~s~~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~--------------- 640 (792)
|+.++ .. ..+. .|...+.+++|+|||+.++++. ++.|++||+.+++.......+ +
T Consensus 97 d~~~~-~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 97 KIPHG-DP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL 172 (723)
T ss_dssp ESSSC-CC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred ECCCC-ce-EeccCCccccccccccEECCCCCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEec
Confidence 99874 33 3333 3445588999999998776444 479999999998877655431 1
Q ss_pred ---eEEEEecCCCEEEEEEcCC----------------------------------eEEEEECCCCeEEEEecCC-----
Q 003840 641 ---AQMRFQPHLGRYLAAAAEN----------------------------------VVSILDAETQACRLSLQGH----- 678 (792)
Q Consensus 641 ---~~v~~sp~~~~lla~s~dg----------------------------------~I~i~D~~t~~~~~~l~~h----- 678 (792)
..+.|+|+++.|++++.++ .|++||+.+++....+..+
T Consensus 173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~ 252 (723)
T 1xfd_A 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM 252 (723)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence 5799999999999887543 7999999998765666554
Q ss_pred -CCCeEEEEEcCCCCEEEEEeC----C-eEEEEECCCCCCcceEEEeec-CCCce----EEEEEeCCCCEEEEE--EcCC
Q 003840 679 -TKPIDSVCWDPSGELLASVSE----D-SVRVWTVGSGSEGECVHELSC-NGNKF----HSCVFHPTYPSLLVI--GCYQ 745 (792)
Q Consensus 679 -~~~V~sv~~spdg~~Las~s~----d-~I~IwDl~s~~~~~~i~~~~~-~~~~i----~si~fspdg~~L~sg--s~dg 745 (792)
...+.+++|+|||++|++... + .|++||+.++. +...+.. +...+ ..++|+|||+.|++. ..++
T Consensus 253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 567899999999998876642 2 79999998763 3333222 22333 378999999977764 4555
Q ss_pred ------eEEEEE-CCCCc---EEEEcccCCCeEE-EEEeCCCCEEEEEeCC---CcEEEeC
Q 003840 746 ------SLELWN-MSENK---TMTLTAHEGLIAA-LAVSTETGYVASASHD---KFVKLWK 792 (792)
Q Consensus 746 ------~I~IwD-l~~~~---~~~~~~h~~~V~s-l~fspdg~~LaSgs~D---G~I~IWd 792 (792)
.|++|| ..++. ...+..+...+.. ++|+|||++|+..+.+ +.++||+
T Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred CCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 577788 45555 4444444444554 6999999999876665 7888884
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=1.6e-20 Score=203.79 Aligned_cols=264 Identities=10% Similarity=0.096 Sum_probs=183.2
Q ss_pred EEEEEeC----CCeEEEEECC--CCceeE-EeccCCCCEEEEEECCCCCeEEEEeC---CCcEEEEeCCCCC-ceeEEec
Q 003840 526 LLATGGH----DKKAVLWHTD--TLKSKT-NLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPG-YSLRTFM 594 (792)
Q Consensus 526 ~Lasgs~----Dg~I~vWdl~--t~~~~~-~l~~h~~~V~~i~fspdg~~Lasgs~---Dg~V~IWdl~s~~-~~i~~~~ 594 (792)
.|++|++ ++.|.+|+++ +++... ....+...+..++|+|+++ |++++. ++.|++||+.++. ..+..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 4555543 4567777654 555433 3345567788899999998 555554 6899999997532 1344445
Q ss_pred ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-Ce--eEEEeeC------------CeeEEEEecCCCEEEEEE-cC
Q 003840 595 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GS--CTRVFKG------------GTAQMRFQPHLGRYLAAA-AE 658 (792)
Q Consensus 595 ~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~--~~~~~~~------------~~~~v~~sp~~~~lla~s-~d 658 (792)
.+...+..++|+|+++.+++++..++.|.+|++.. +. .+..+.. .+..++|+|++. ++++. .+
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~ 161 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGS 161 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCC
Confidence 57778899999999987776666889999999963 32 2333322 255699999999 55544 57
Q ss_pred CeEEEEECC-CCeEE--EEecC-CCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCC-CCcceEEEeecCC------Cc
Q 003840 659 NVVSILDAE-TQACR--LSLQG-HTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSG-SEGECVHELSCNG------NK 725 (792)
Q Consensus 659 g~I~i~D~~-t~~~~--~~l~~-h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s~-~~~~~i~~~~~~~------~~ 725 (792)
+.|.+||+. +++.. ..+.. ....+..++|+|||++|++++. + .|.+|++... .....+..+.... ..
T Consensus 162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 241 (347)
T 3hfq_A 162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNG 241 (347)
T ss_dssp TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCE
T ss_pred CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCc
Confidence 899999998 55433 22222 2336788999999997776554 4 8999998742 1222233333222 45
Q ss_pred eEEEEEeCCCCEEEEEE-cCCeEEEEECCCC---cEE-EEcccCCCeEEEEEeCCCCEEEEEeCC-CcEEEe
Q 003840 726 FHSCVFHPTYPSLLVIG-CYQSLELWNMSEN---KTM-TLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 791 (792)
Q Consensus 726 i~si~fspdg~~L~sgs-~dg~I~IwDl~~~---~~~-~~~~h~~~V~sl~fspdg~~LaSgs~D-G~I~IW 791 (792)
+..++|+|+|++|++++ .++.|.+||+... +.+ .+..+...+.+++|+|||++|++++.+ +.|.+|
T Consensus 242 ~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 242 AAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 88899999999886554 5789999999732 222 444566678999999999998888765 899999
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=3.5e-20 Score=201.20 Aligned_cols=249 Identities=14% Similarity=0.161 Sum_probs=182.6
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCc--eeEEeccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEe
Q 003840 509 RASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWD 582 (792)
Q Consensus 509 ~~H~~~V~~lafspdg~~Lasgs~---Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs-~Dg~V~IWd 582 (792)
..+...+.+++|+|||+ |++++. ++.|++||+++++ .+..+..+...+..++|+|++++|++++ .++.|.+|+
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 34557788999999999 555544 6899999998765 3444556778899999999999888887 678999999
Q ss_pred CCCCCce--eEEecc---------cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeEEE--ee----CCeeEEE
Q 003840 583 ADNPGYS--LRTFMG---------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRV--FK----GGTAQMR 644 (792)
Q Consensus 583 l~s~~~~--i~~~~~---------h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~-~~~~~~~--~~----~~~~~v~ 644 (792)
+...+.. +..+.. +...+.+++|+|+++ ++++...++.|++||+. +++.... +. .....++
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 9743332 222221 123488999999998 88788889999999998 5543322 11 1456789
Q ss_pred EecCCCEEEEEE-cCCeEEEEECCC--CeE--EEEecCCC------CCeEEEEEcCCCCEEEE-EeCC-eEEEEECCCCC
Q 003840 645 FQPHLGRYLAAA-AENVVSILDAET--QAC--RLSLQGHT------KPIDSVCWDPSGELLAS-VSED-SVRVWTVGSGS 711 (792)
Q Consensus 645 ~sp~~~~lla~s-~dg~I~i~D~~t--~~~--~~~l~~h~------~~V~sv~~spdg~~Las-~s~d-~I~IwDl~s~~ 711 (792)
|+|+++++++++ .++.|.+|+++. ++. +..+.... ..+..++|+|||++|++ +..+ .|.+||+....
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 999999777765 478999999874 443 23333322 34888999999998754 4445 99999997433
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEE--ECCCCcEEE
Q 003840 712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELW--NMSENKTMT 759 (792)
Q Consensus 712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-g~I~Iw--Dl~~~~~~~ 759 (792)
....+..+..+...+..++|+|++++|++++.+ +.|.+| |..++++..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 274 HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 445666666666778899999999999998875 799999 556676653
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=6.3e-20 Score=198.40 Aligned_cols=224 Identities=13% Similarity=0.053 Sum_probs=178.6
Q ss_pred CeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEeccCCCC---------EEEEEECCCCCeEEEEe--CCCcEEEE
Q 003840 514 KVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSL---------ITDVRFSPSMPRLATSS--FDKTVRVW 581 (792)
Q Consensus 514 ~V~~lafspdg~~Lasg-s~Dg~I~vWdl~t~~~~~~l~~h~~~---------V~~i~fspdg~~Lasgs--~Dg~V~IW 581 (792)
.+.+++|++||++++++ ..++.|.+||..+++.+..+..+... +.+++|+|++++|++++ .++.|.+|
T Consensus 90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~ 169 (353)
T 3vgz_A 90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV 169 (353)
T ss_dssp CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE
Confidence 36789999999966555 45799999999999988888765432 78999999999887776 47889999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC-------CeeEEEEecCCCEEEE
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-------GTAQMRFQPHLGRYLA 654 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-------~~~~v~~sp~~~~lla 654 (792)
|+.+ +..+..+..+...+.+++|+|+++.++ +++.++.|.+||+.+++.+..+.. ....++|+|+++++++
T Consensus 170 d~~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 247 (353)
T 3vgz_A 170 DGGN-IKLKTAIQNTGKMSTGLALDSEGKRLY-TTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFI 247 (353)
T ss_dssp ETTT-TEEEEEECCCCTTCCCCEEETTTTEEE-EECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred cCCC-CceEEEecCCCCccceEEECCCCCEEE-EEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence 9987 666666665666688999999988655 666799999999999998877653 2345899999998888
Q ss_pred EEcC-CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 003840 655 AAAE-NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 731 (792)
Q Consensus 655 ~s~d-g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s-~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~f 731 (792)
++.+ +.|.+||..+++.+..+.... ..+++|+|+++++++++ .+ .|.+||+.++ +.+..+.. ...+..++|
T Consensus 248 ~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~ 321 (353)
T 3vgz_A 248 TDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY---KVVKTFDT-PTHPNSLAL 321 (353)
T ss_dssp EESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEEEEC-CSEEEEEEE
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCC---eEEEEEec-CCCCCeEEE
Confidence 7764 899999999999888776543 25799999999766665 45 9999999876 55555544 347899999
Q ss_pred eCCCCEEEEEEcCC
Q 003840 732 HPTYPSLLVIGCYQ 745 (792)
Q Consensus 732 spdg~~L~sgs~dg 745 (792)
+|++++|+++..++
T Consensus 322 s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 322 SADGKTLYVSVKQK 335 (353)
T ss_dssp CTTSCEEEEEEECC
T ss_pred cCCCCEEEEEEccc
Confidence 99999888887664
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=1e-20 Score=225.84 Aligned_cols=239 Identities=13% Similarity=0.148 Sum_probs=178.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CceeEEeccCCCC--------------EEEEEECCCCCeEE
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-----LKSKTNLEEHSSL--------------ITDVRFSPSMPRLA 570 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t-----~~~~~~l~~h~~~--------------V~~i~fspdg~~La 570 (792)
.+...+.+++|||||++||++ .|+.|++||+.+ ++.......+... +.+++|+|||++|+
T Consensus 118 ~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la 196 (706)
T 2z3z_A 118 DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLA 196 (706)
T ss_dssp CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEE
T ss_pred CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEE
Confidence 345567889999999999995 689999999998 7766555444433 48999999999999
Q ss_pred EEe---------------------------------CCCcEEEEeCCCCCceeEEe--cccCCCeEEEEEcCCCCeEEEE
Q 003840 571 TSS---------------------------------FDKTVRVWDADNPGYSLRTF--MGHSASVMSLDFHPNKDDLICS 615 (792)
Q Consensus 571 sgs---------------------------------~Dg~V~IWdl~s~~~~i~~~--~~h~~~V~sl~fspd~~~ll~s 615 (792)
+++ .+..|++||+.+ +...... ..|...|.+++|+||++.++++
T Consensus 197 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 275 (706)
T 2z3z_A 197 FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT-GKTVYLQTGEPKEKFLTNLSWSPDENILYVA 275 (706)
T ss_dssp EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT-TEEEECCCCSCTTCEEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC-CceEeeccCCCCceeEeeEEEECCCCEEEEE
Confidence 987 346799999987 4333322 2466789999999999866644
Q ss_pred EeCCC-----cEEEEEcCCC-eeEEEee--CC-----eeEEEEec--CCCEEEEEEcCCeEEEEECC-CCeEEEEecCCC
Q 003840 616 CDGDG-----EIRYWSINNG-SCTRVFK--GG-----TAQMRFQP--HLGRYLAAAAENVVSILDAE-TQACRLSLQGHT 679 (792)
Q Consensus 616 gs~Dg-----~I~iwdl~~~-~~~~~~~--~~-----~~~v~~sp--~~~~lla~s~dg~I~i~D~~-t~~~~~~l~~h~ 679 (792)
+ .++ .|++||+.++ .....+. .. ...+.|+| ++..++++..++.+.||+++ ++..+..+..+.
T Consensus 276 ~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~ 354 (706)
T 2z3z_A 276 E-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE 354 (706)
T ss_dssp E-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSS
T ss_pred E-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCC
Confidence 4 444 8999999998 4433332 11 24579999 88877777778888888876 667777888788
Q ss_pred CCeEE-EEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEE
Q 003840 680 KPIDS-VCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY----QSLE 748 (792)
Q Consensus 680 ~~V~s-v~~spdg~~Las~s~d------~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d----g~I~ 748 (792)
..+.+ ++|+|+++.|++++.+ .|+.||+.++. ...+. +...+..++|+||+++|++.+.+ +.|+
T Consensus 355 ~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~ 429 (706)
T 2z3z_A 355 WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVT 429 (706)
T ss_dssp SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEE
T ss_pred eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEE
Confidence 88877 7999999987766543 46666666542 22232 45668899999999998887654 4699
Q ss_pred EEECCCCc
Q 003840 749 LWNMSENK 756 (792)
Q Consensus 749 IwDl~~~~ 756 (792)
+||+.+++
T Consensus 430 l~d~~~~~ 437 (706)
T 2z3z_A 430 VTNIGKGS 437 (706)
T ss_dssp EEESSSCE
T ss_pred EEECCCCe
Confidence 99999887
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=2.2e-20 Score=201.39 Aligned_cols=268 Identities=8% Similarity=0.031 Sum_probs=191.6
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC-CCEEEEEECCCCCeEE-EEeCCCcEEEEeCCCCCceeEEec
Q 003840 517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFM 594 (792)
Q Consensus 517 ~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~-~~V~~i~fspdg~~La-sgs~Dg~V~IWdl~s~~~~i~~~~ 594 (792)
.++++++++++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|++||+.+ +..+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEEEEEE
Confidence 45678889999999999999999999999888887543 2578999999998665 555789999999987 55555544
Q ss_pred cc------CCCeEEEEEcCCCCeEEEEEeC-----------CCcEEEEEcCCCee---EEEee--CCeeEEEEecCCCEE
Q 003840 595 GH------SASVMSLDFHPNKDDLICSCDG-----------DGEIRYWSINNGSC---TRVFK--GGTAQMRFQPHLGRY 652 (792)
Q Consensus 595 ~h------~~~V~sl~fspd~~~ll~sgs~-----------Dg~I~iwdl~~~~~---~~~~~--~~~~~v~~sp~~~~l 652 (792)
.. ...+.+++|+|+++.++++... ++.|++||+.+++. +..+. ..+.+++|+|++. +
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 22 2337889999999877655533 48999999988443 33333 3467788999998 6
Q ss_pred EEEEcCCeEEEEECCCCeEEEEecCCCC------------------------CeEEEEEcCCCCEEEEEeCC--eEEEEE
Q 003840 653 LAAAAENVVSILDAETQACRLSLQGHTK------------------------PIDSVCWDPSGELLASVSED--SVRVWT 706 (792)
Q Consensus 653 la~s~dg~I~i~D~~t~~~~~~l~~h~~------------------------~V~sv~~spdg~~Las~s~d--~I~IwD 706 (792)
++++ +.|.+||..+++.+..+..+.. ...++++++++......... .+..+|
T Consensus 162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 6643 4499999999988877654320 23446666554322111111 233356
Q ss_pred CCCCCCcceEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003840 707 VGSGSEGECVHELSCNGNKFHSCVFHP-TYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 785 (792)
Q Consensus 707 l~s~~~~~~i~~~~~~~~~i~si~fsp-dg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~D 785 (792)
..++. ..+..+......+..++|+| ++++++++ ++.|++||+.+++.+........+.+++|++++++|++++.+
T Consensus 240 ~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred ccCCc--EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCC
Confidence 65542 12223334566788999999 99999888 789999999999887554455568899999999998888889
Q ss_pred CcEEEeC
Q 003840 786 KFVKLWK 792 (792)
Q Consensus 786 G~I~IWd 792 (792)
+.|++||
T Consensus 316 ~~v~v~d 322 (349)
T 1jmx_B 316 NDLAVFN 322 (349)
T ss_dssp SEEEEEE
T ss_pred CeEEEEe
Confidence 9999996
No 151
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=7.6e-21 Score=209.13 Aligned_cols=285 Identities=12% Similarity=0.069 Sum_probs=204.2
Q ss_pred eeeeeecCCCCeEE-----EEEcCCCCEEEEEeC-CC--eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 003840 504 EANSVRASTSKVIC-----CHFSSDGKLLATGGH-DK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 575 (792)
Q Consensus 504 ~~~~l~~H~~~V~~-----lafspdg~~Lasgs~-Dg--~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D 575 (792)
.+..+..|...+.. .+|+|||++||+++. ++ .|++||+.+++......++...+..++|+||++.|++++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 45566666666666 899999999999887 66 48899999998877777777666678899999999999999
Q ss_pred CcEEEEeCCCCCceeEEecccCCCeEEEE--EcCCCCeEEEEE---------------------eCCCcEEEEEcCCCee
Q 003840 576 KTVRVWDADNPGYSLRTFMGHSASVMSLD--FHPNKDDLICSC---------------------DGDGEIRYWSINNGSC 632 (792)
Q Consensus 576 g~V~IWdl~s~~~~i~~~~~h~~~V~sl~--fspd~~~ll~sg---------------------s~Dg~I~iwdl~~~~~ 632 (792)
+.|++||+.+ +.....+..+...+.... +++++..+++.. ..+..|++||+.+++.
T Consensus 102 ~~l~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 102 RNLMRVDLAT-LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TEEEEEETTT-CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CeEEEEECCC-CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 9999999997 555555555555554444 478887655322 2347899999999876
Q ss_pred EEEee--CCeeEEEEec-CCCEEEEEEcC------CeEEEEECCCCeEEEEecCCC--CCeEEEEEcCCCCEEEEEeC--
Q 003840 633 TRVFK--GGTAQMRFQP-HLGRYLAAAAE------NVVSILDAETQACRLSLQGHT--KPIDSVCWDPSGELLASVSE-- 699 (792)
Q Consensus 633 ~~~~~--~~~~~v~~sp-~~~~lla~s~d------g~I~i~D~~t~~~~~~l~~h~--~~V~sv~~spdg~~Las~s~-- 699 (792)
..... ..+..+.|+| +++.++.+..+ ..|.++|...+.... +..+. ..+..++|+|||+.|+..+.
T Consensus 181 ~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 181 TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceECCCCCEEEEEecCC
Confidence 65543 3467789999 88888877763 378888887665433 33333 25778999999997765443
Q ss_pred C----eEEEEECCCCCCcceEEEeecCCCc---eEEEEEeCCCCEEEEE---------EcCCeEEEEECCCCcEEEEccc
Q 003840 700 D----SVRVWTVGSGSEGECVHELSCNGNK---FHSCVFHPTYPSLLVI---------GCYQSLELWNMSENKTMTLTAH 763 (792)
Q Consensus 700 d----~I~IwDl~s~~~~~~i~~~~~~~~~---i~si~fspdg~~L~sg---------s~dg~I~IwDl~~~~~~~~~~h 763 (792)
+ .|++||+.+++. ..+..+...... ...++|+|||+.|++. ..+..|++||+.+++...+..+
T Consensus 260 ~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (388)
T 3pe7_A 260 GSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARH 338 (388)
T ss_dssp TCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEEC
T ss_pred CCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccc
Confidence 2 399999988643 233333221000 1113799999988865 3455899999999988777777
Q ss_pred CC-----------CeEEEEEeCCCCEEEEEeC-CCcEEEe
Q 003840 764 EG-----------LIAALAVSTETGYVASASH-DKFVKLW 791 (792)
Q Consensus 764 ~~-----------~V~sl~fspdg~~LaSgs~-DG~I~IW 791 (792)
.. .+.+++|+|||++|+.++. +|...||
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 66 6888999999998887664 7777777
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=2.2e-19 Score=196.18 Aligned_cols=267 Identities=12% Similarity=0.092 Sum_probs=190.7
Q ss_pred eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCC--Cce--eEEeccCCCCEEEEEECCCCCeEEEEe
Q 003840 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDT--LKS--KTNLEEHSSLITDVRFSPSMPRLATSS 573 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~D----g~I~vWdl~t--~~~--~~~l~~h~~~V~~i~fspdg~~Lasgs 573 (792)
++.+..+ +...+..++|+|||++|++++.+ +.|.+|+++. ++. +..+..+......+++ ++++|++++
T Consensus 41 ~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~ 116 (361)
T 3scy_A 41 SLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTAN 116 (361)
T ss_dssp EEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEE
T ss_pred EEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEE
Confidence 3444444 77788999999999999999876 7999998865 433 3334446667888888 788777776
Q ss_pred -CCCcEEEEeCCCCCcee---EE--ecc--------cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee------E
Q 003840 574 -FDKTVRVWDADNPGYSL---RT--FMG--------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC------T 633 (792)
Q Consensus 574 -~Dg~V~IWdl~s~~~~i---~~--~~~--------h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~------~ 633 (792)
.++.|.+|++...+... .. ..+ +...+.+++|+|+++.+++++..++.|++|++..... +
T Consensus 117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l 196 (361)
T 3scy_A 117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKF 196 (361)
T ss_dssp TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCC
T ss_pred CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccce
Confidence 57899999997643221 11 111 1234688999999998887877799999999875431 1
Q ss_pred ------E--Ee--eCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeE--EEEec---CCCCCeEEEEEcCCCCEEEEE
Q 003840 634 ------R--VF--KGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQAC--RLSLQ---GHTKPIDSVCWDPSGELLASV 697 (792)
Q Consensus 634 ------~--~~--~~~~~~v~~sp~~~~lla~s-~dg~I~i~D~~t~~~--~~~l~---~h~~~V~sv~~spdg~~Las~ 697 (792)
. .. ......++|+|+++++++++ .++.|.+||+++++. +..+. .+.....+++|+|||++|+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~ 276 (361)
T 3scy_A 197 LTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYAS 276 (361)
T ss_dssp EEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEE
T ss_pred eecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEE
Confidence 1 11 12456799999999888888 589999999987754 33332 234557899999999988665
Q ss_pred e-C-C-eEEEEECCC-CCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--ECCCCcEEEEc--ccCCCeE
Q 003840 698 S-E-D-SVRVWTVGS-GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELW--NMSENKTMTLT--AHEGLIA 768 (792)
Q Consensus 698 s-~-d-~I~IwDl~s-~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~Iw--Dl~~~~~~~~~--~h~~~V~ 768 (792)
. . + .|.+|++.. ......+..+.. ...+..++|+|++++|++++ .++.|.+| |..++++..+. .+...+.
T Consensus 277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~ 355 (361)
T 3scy_A 277 NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPV 355 (361)
T ss_dssp ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEE
T ss_pred CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCe
Confidence 4 4 3 899999962 222344555554 56788999999999999988 56889996 55577766443 3456788
Q ss_pred EEEEe
Q 003840 769 ALAVS 773 (792)
Q Consensus 769 sl~fs 773 (792)
|+.|.
T Consensus 356 ~v~~~ 360 (361)
T 3scy_A 356 CLKFV 360 (361)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99886
No 153
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=2.9e-20 Score=199.22 Aligned_cols=257 Identities=10% Similarity=0.065 Sum_probs=194.0
Q ss_pred CCCcceeccCCcceeeeeeeecCC-C-CeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCceeEEecc-C----CCCEEEE
Q 003840 489 AGGRGMDVSQGFSFKEANSVRAST-S-KVICCHFSSDGKLLAT-GGHDKKAVLWHTDTLKSKTNLEE-H----SSLITDV 560 (792)
Q Consensus 489 ~~~~~~d~~~~~~~~~~~~l~~H~-~-~V~~lafspdg~~Las-gs~Dg~I~vWdl~t~~~~~~l~~-h----~~~V~~i 560 (792)
..+..||...+ +.+..+.... . .+.+++|+|||++|++ +..++.|.+||+.+++.+..+.. + ...+.++
T Consensus 11 ~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (337)
T 1pby_B 11 DKLVVIDTEKM---AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA 87 (337)
T ss_dssp TEEEEEETTTT---EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCE
T ss_pred CeEEEEECCCC---cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccce
Confidence 34455665443 3444444222 2 4889999999987654 55678999999999988877653 2 2257789
Q ss_pred EECCCCCeEEEEe------------CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 003840 561 RFSPSMPRLATSS------------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 628 (792)
Q Consensus 561 ~fspdg~~Lasgs------------~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~ 628 (792)
+|+|++++|++++ .++.|++||+.+ +..+..+.. ...+.+++|+|+++.++++ ++.|++||+.
T Consensus 88 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~ 162 (337)
T 1pby_B 88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKAFEA-PRQITMLAWARDGSKLYGL---GRDLHVMDPE 162 (337)
T ss_dssp EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEEEETT
T ss_pred EECCCCCEEEEEecccccccccccccCceEEEEECCC-CcEEEEEeC-CCCcceeEECCCCCEEEEe---CCeEEEEECC
Confidence 9999999998886 579999999986 555555543 4567889999999877654 6899999999
Q ss_pred CCeeEEEeeCCe--eEEEEecCCCEEEEEEcCC------------------------eEEEEECCCCeEE-EEecCCCCC
Q 003840 629 NGSCTRVFKGGT--AQMRFQPHLGRYLAAAAEN------------------------VVSILDAETQACR-LSLQGHTKP 681 (792)
Q Consensus 629 ~~~~~~~~~~~~--~~v~~sp~~~~lla~s~dg------------------------~I~i~D~~t~~~~-~~l~~h~~~ 681 (792)
+++.+..+.... ..+.|+|++..+++.+..+ .|.+||+.+++.. ..+..+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 242 (337)
T 1pby_B 163 AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242 (337)
T ss_dssp TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCc
Confidence 999887765433 4457888887665554322 4789999998764 334456677
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 682 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 682 V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
+.+++|+|++++|+++ .+.|++||+.++ +.+..+.. ...+.+++|+|++++|++++.++.|++||+.+++.+
T Consensus 243 ~~~~~~s~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 243 YFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred eeeEEECCCCCEEEEe-CCeEEEEECCCC---cCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 8899999999999888 459999999876 45555443 346789999999999999989999999999998876
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=1.9e-19 Score=196.58 Aligned_cols=264 Identities=12% Similarity=0.106 Sum_probs=187.0
Q ss_pred CCEEEEEeC----CCeEEEEEC--CCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC----CcEEEEeCCCC-Cc--ee
Q 003840 524 GKLLATGGH----DKKAVLWHT--DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD----KTVRVWDADNP-GY--SL 590 (792)
Q Consensus 524 g~~Lasgs~----Dg~I~vWdl--~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D----g~V~IWdl~s~-~~--~i 590 (792)
..++++|++ ++.|++|++ ++++.......+...+..++|+|++++|++++.+ +.|.+|+++.. +. .+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 345666643 568888876 4565443322277788899999999999999886 79999999764 22 22
Q ss_pred EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE------ee-----------CCeeEEEEecCCCEEE
Q 003840 591 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------FK-----------GGTAQMRFQPHLGRYL 653 (792)
Q Consensus 591 ~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~------~~-----------~~~~~v~~sp~~~~ll 653 (792)
.....+......+++ +++.++++...++.|.+|++.....+.. +. .+...++|+|++++++
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 333345567788888 7777777776799999999975433221 11 1235699999999887
Q ss_pred EEEc-CCeEEEEECCCCe-------E------EEEecCCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCCCcceEE
Q 003840 654 AAAA-ENVVSILDAETQA-------C------RLSLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVH 717 (792)
Q Consensus 654 a~s~-dg~I~i~D~~t~~-------~------~~~l~~h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s~~~~~~i~ 717 (792)
+++. ++.|.+|++.... . ......+...+.+++|+|+|++|++++. + .|.+||+.++. ...+.
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~-~~~~~ 249 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM-LDEIQ 249 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE-EEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc-eEEeE
Confidence 7765 7899999887533 1 1222234556889999999998887774 4 99999998542 22233
Q ss_pred Ee---ecCCCceEEEEEeCCCCEEEEEEcC--CeEEEEECC--CCcEE---EEcccCCCeEEEEEeCCCCEEEEEe-CCC
Q 003840 718 EL---SCNGNKFHSCVFHPTYPSLLVIGCY--QSLELWNMS--ENKTM---TLTAHEGLIAALAVSTETGYVASAS-HDK 786 (792)
Q Consensus 718 ~~---~~~~~~i~si~fspdg~~L~sgs~d--g~I~IwDl~--~~~~~---~~~~h~~~V~sl~fspdg~~LaSgs-~DG 786 (792)
.+ ..+......++|+||+++|+++..+ +.|.+|++. +++.. .+.. ...+.+++|+|||++|++++ .++
T Consensus 250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTT
T ss_pred EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCC
Confidence 33 2233457899999999999887765 799999985 45432 2223 56788999999999998887 578
Q ss_pred cEEEe
Q 003840 787 FVKLW 791 (792)
Q Consensus 787 ~I~IW 791 (792)
.|.+|
T Consensus 329 ~v~v~ 333 (361)
T 3scy_A 329 VIQIF 333 (361)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99996
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=5e-20 Score=207.83 Aligned_cols=279 Identities=11% Similarity=0.116 Sum_probs=194.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------ceeEE-----eccCCCCEEEEEECCCCCeEE----EE
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----------KSKTN-----LEEHSSLITDVRFSPSMPRLA----TS 572 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~----------~~~~~-----l~~h~~~V~~i~fspdg~~La----sg 572 (792)
...+.++++++++.+|++++.|+ |+||+.... ..+.. ...+...|++++|+|++++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44689999999999999999887 888875311 01111 113566799999999999999 78
Q ss_pred eCCCcEEEEeCCCC-----C--c---eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CC
Q 003840 573 SFDKTVRVWDADNP-----G--Y---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GG 639 (792)
Q Consensus 573 s~Dg~V~IWdl~s~-----~--~---~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~ 639 (792)
+.|+.|+|||+.+. . . .+..+.+|...|.+++|+|++..+|++++.||+|++||++++..+.... ..
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 89999999998752 1 1 2456667999999999999977788899999999999999987665443 46
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC-------CCeEEEEEcCCCCEEEEEe-CC-------eEEE
Q 003840 640 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-------KPIDSVCWDPSGELLASVS-ED-------SVRV 704 (792)
Q Consensus 640 ~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~-------~~V~sv~~spdg~~Las~s-~d-------~I~I 704 (792)
+.+++|+|++.+|++++.||.|++||.+ ++....+..|. ..|.+++|++++.++++.+ .+ .+++
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i 273 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM 273 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence 8899999999999999999999999998 55555554432 3799999999888876543 21 3999
Q ss_pred EECCCCCC--cceEEEee-------cCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCC--cE--EE--------E--
Q 003840 705 WTVGSGSE--GECVHELS-------CNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSEN--KT--MT--------L-- 760 (792)
Q Consensus 705 wDl~s~~~--~~~i~~~~-------~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~~~--~~--~~--------~-- 760 (792)
|+++.... ...+..+. ........+.+-++.+++++++.. ..|.|+..... .. .. +
T Consensus 274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~~ra~lP~ 353 (434)
T 2oit_A 274 ALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAELPV 353 (434)
T ss_dssp EECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEECGGGCCBCCB
T ss_pred EEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEeccccccccccC
Confidence 99986532 12222221 122233445555888887777664 34555554321 11 00 1
Q ss_pred --cccCCCeEEEEEeC---------------CCCEEEEEeCCCcEEEeC
Q 003840 761 --TAHEGLIAALAVST---------------ETGYVASASHDKFVKLWK 792 (792)
Q Consensus 761 --~~h~~~V~sl~fsp---------------dg~~LaSgs~DG~I~IWd 792 (792)
...+..+..+++.- -.-+|.+-+.||.|..|.
T Consensus 354 ~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~ 402 (434)
T 2oit_A 354 TDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFY 402 (434)
T ss_dssp CTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEE
T ss_pred CCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEE
Confidence 11233344444421 124678888999999883
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=2.9e-20 Score=222.54 Aligned_cols=269 Identities=13% Similarity=0.052 Sum_probs=185.7
Q ss_pred CeEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCcee--EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003840 514 KVICCHFSSDGKLLATGGH---------DKKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~---------Dg~I~vWdl~t~~~~--~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd 582 (792)
.|.+++|||||++||+++. ++.|++||+++++.+ ..+ ...+.+++|+|||+.|+++. |+.|++||
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~ 136 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ 136 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence 3789999999999999876 789999999998763 222 25688999999999999986 78999999
Q ss_pred CCCCCceeEEe-cccCCCe-----------------EEEEEcCCCCeEEEEEeCCC------------------------
Q 003840 583 ADNPGYSLRTF-MGHSASV-----------------MSLDFHPNKDDLICSCDGDG------------------------ 620 (792)
Q Consensus 583 l~s~~~~i~~~-~~h~~~V-----------------~sl~fspd~~~ll~sgs~Dg------------------------ 620 (792)
+.++ ...... .++...| .+++|+|||+.++++...++
T Consensus 137 ~~~g-~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp 215 (719)
T 1z68_A 137 RPGD-PPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP 215 (719)
T ss_dssp STTS-CCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred CCCC-CcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence 9873 333222 2333322 48999999987765443322
Q ss_pred ---------cEEEEEcCCCeeE---EE-----e---eCCeeEEEEecCCCEEEEEEcC----CeEEEEE----CCCCeEE
Q 003840 621 ---------EIRYWSINNGSCT---RV-----F---KGGTAQMRFQPHLGRYLAAAAE----NVVSILD----AETQACR 672 (792)
Q Consensus 621 ---------~I~iwdl~~~~~~---~~-----~---~~~~~~v~~sp~~~~lla~s~d----g~I~i~D----~~t~~~~ 672 (792)
.|++||+.+++.. .. + ...+..++|+|++..+++.... ..|.+|| ..++++.
T Consensus 216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 7889999987753 21 1 1235678999995444443322 2588999 8877665
Q ss_pred EEe----cCCCCCeE-----EEEEcCCCCEEEE--EeCC---eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003840 673 LSL----QGHTKPID-----SVCWDPSGELLAS--VSED---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 738 (792)
Q Consensus 673 ~~l----~~h~~~V~-----sv~~spdg~~Las--~s~d---~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L 738 (792)
..+ ..|...+. +++|+|||+.|+. ...+ .|++||+.++. ...+..+...+..+.+. +++.|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d~~~i 370 (719)
T 1z68_A 296 KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV-TQDSL 370 (719)
T ss_dssp GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE-CSSEE
T ss_pred EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE-eCCEE
Confidence 544 46777776 8899999996554 3333 68888886653 33444455567777777 88888
Q ss_pred EEEEcC-----CeEEEEECCC--C--cEEEEc----ccCCCeEEEEEeCCCCEEEE-EeCC--CcEEEeC
Q 003840 739 LVIGCY-----QSLELWNMSE--N--KTMTLT----AHEGLIAALAVSTETGYVAS-ASHD--KFVKLWK 792 (792)
Q Consensus 739 ~sgs~d-----g~I~IwDl~~--~--~~~~~~----~h~~~V~sl~fspdg~~LaS-gs~D--G~I~IWd 792 (792)
+..+.+ +.+++|.+.. + +...+. +|...+..+.|++|+++|+. ++.+ ..+++||
T Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 371 FYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp EEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred EEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 888765 6788887643 4 223332 26667889999999987764 3333 3466664
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=6.1e-21 Score=228.46 Aligned_cols=268 Identities=12% Similarity=0.061 Sum_probs=198.1
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC---CEEEEEECCCCCeEEEEeC---------CCcEEEEeCC
Q 003840 517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS---LITDVRFSPSMPRLATSSF---------DKTVRVWDAD 584 (792)
Q Consensus 517 ~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~---~V~~i~fspdg~~Lasgs~---------Dg~V~IWdl~ 584 (792)
+++|+|||+++++ +.|+.|++||+.+++....+..|.. .|.+++|+|||++|++++. |+.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 7899999965554 4699999999999998877776644 4899999999999998876 7899999998
Q ss_pred CCCcee--EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---------------------ee
Q 003840 585 NPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---------------------TA 641 (792)
Q Consensus 585 s~~~~i--~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---------------------~~ 641 (792)
+ +..+ ..+ ...+.+++|+|||+.++++ . |+.|++||+.++++......+ ..
T Consensus 99 ~-g~~~~~~~l---~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 99 N-GEFVRGNEL---PRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp T-TEECCSSCC---CSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred C-Cccccceec---CcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 7 3331 122 3568899999999877654 3 789999999988766543211 14
Q ss_pred EEEEecCCCEEEEEEcCC----------------------------------eEEEEECCCCeEE---E-----EecCCC
Q 003840 642 QMRFQPHLGRYLAAAAEN----------------------------------VVSILDAETQACR---L-----SLQGHT 679 (792)
Q Consensus 642 ~v~~sp~~~~lla~s~dg----------------------------------~I~i~D~~t~~~~---~-----~l~~h~ 679 (792)
.+.|+|++.+|++++.|. .|++||+.+++.+ . .+.+|.
T Consensus 173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 799999999999887652 7889999988642 1 133577
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-----eEEEEE----CCCCCCcceEE-EeecCCCceE-----EEEEeCCCCEEEE--EE
Q 003840 680 KPIDSVCWDPSGELLASVSED-----SVRVWT----VGSGSEGECVH-ELSCNGNKFH-----SCVFHPTYPSLLV--IG 742 (792)
Q Consensus 680 ~~V~sv~~spdg~~Las~s~d-----~I~IwD----l~s~~~~~~i~-~~~~~~~~i~-----si~fspdg~~L~s--gs 742 (792)
..+.+++|+||++++++.... .|.+|| +.++.....+. ....+...+. .++|+|||+.|+. ..
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 332 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD 332 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence 889999999998877764322 488899 76653322221 0124455555 7899999997665 33
Q ss_pred cCC--eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEeC
Q 003840 743 CYQ--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD-----KFVKLWK 792 (792)
Q Consensus 743 ~dg--~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~D-----G~I~IWd 792 (792)
.++ .|++||+.+++...+..+...|..+.++ +++.|+..+.+ +.++||+
T Consensus 333 ~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 333 KDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp TTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred cCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 444 6888899888877777777778888888 88877776665 7788884
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=2e-18 Score=189.65 Aligned_cols=265 Identities=11% Similarity=0.064 Sum_probs=184.0
Q ss_pred EEEEEeCC--CeEEEEEC--CCCceeEE--ec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC-CCCceeEEecc-c
Q 003840 526 LLATGGHD--KKAVLWHT--DTLKSKTN--LE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD-NPGYSLRTFMG-H 596 (792)
Q Consensus 526 ~Lasgs~D--g~I~vWdl--~t~~~~~~--l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~-s~~~~i~~~~~-h 596 (792)
+|++|++. +.|.+|++ ++++.... .. .....+..++|+|++++|++++.+ .|.+||+. + +........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~-g~~~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSP-TEIVHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEET-TEEEEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCC-CCEEEeeEeec
Confidence 45666653 56887765 45554322 11 234468899999999999999988 89999997 4 444332221 1
Q ss_pred CCCeEEEEEcCCCCe-EEEEEe-------------CCCcEEEEEcC-CCeeEEEee-------CCeeEEEEecCCCEEEE
Q 003840 597 SASVMSLDFHPNKDD-LICSCD-------------GDGEIRYWSIN-NGSCTRVFK-------GGTAQMRFQPHLGRYLA 654 (792)
Q Consensus 597 ~~~V~sl~fspd~~~-ll~sgs-------------~Dg~I~iwdl~-~~~~~~~~~-------~~~~~v~~sp~~~~lla 654 (792)
.+.+.+++|+|+++. ++++++ .+|.+.+|++. .++....+. .....++|+|+++++++
T Consensus 82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 123567899999886 344543 68999999997 465543332 35678999999998887
Q ss_pred EEc-CCeEEEEECC-CCeEE--EEec--CCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCC--CCCcc---eEEEeec
Q 003840 655 AAA-ENVVSILDAE-TQACR--LSLQ--GHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGS--GSEGE---CVHELSC 721 (792)
Q Consensus 655 ~s~-dg~I~i~D~~-t~~~~--~~l~--~h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s--~~~~~---~i~~~~~ 721 (792)
+.. ++.|++||++ +++.. ..+. .|...+..++|+|+|++|++++. + .|.+|++.. +.... .+..+..
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 764 6899999998 67543 3333 24567899999999999888775 3 899998753 32110 1122221
Q ss_pred C----CC------ceEEEE-EeCCCCEEEEEEcCC------eEEEEECC-CCcEEE----EcccCCCeEEEEEeC---CC
Q 003840 722 N----GN------KFHSCV-FHPTYPSLLVIGCYQ------SLELWNMS-ENKTMT----LTAHEGLIAALAVST---ET 776 (792)
Q Consensus 722 ~----~~------~i~si~-fspdg~~L~sgs~dg------~I~IwDl~-~~~~~~----~~~h~~~V~sl~fsp---dg 776 (792)
. .. .+..++ |+|||++|++++.+. .|.+|++. +++... ...+...+..++|+| ||
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 1 11 578899 999999988876533 89999996 566542 223555678899999 89
Q ss_pred CEEEEEeCC-CcEEEeC
Q 003840 777 GYVASASHD-KFVKLWK 792 (792)
Q Consensus 777 ~~LaSgs~D-G~I~IWd 792 (792)
++|++++.+ +.|+||+
T Consensus 322 ~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TEEEEECSSSCEEEEEE
T ss_pred CEEEEEEcCCCeEEEEE
Confidence 999999875 8999995
No 159
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.82 E-value=3.4e-19 Score=195.87 Aligned_cols=271 Identities=12% Similarity=0.027 Sum_probs=187.2
Q ss_pred CeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003840 514 KVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 590 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~D---g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i 590 (792)
.+.+++|+|||++|+.+..+ ..|++||+.+++.......+...+..+.|+||+++|++++.++.|++||+.+ +...
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-~~~~ 115 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLET-LEEQ 115 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT-CCEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCC-CCcE
Confidence 37788999999998887543 4789999998876544433333333478999999999999999999999987 4444
Q ss_pred EEecccCCCeEE-------------------EEEcCCCCeEEEEE----eCCCcEEEEEcCCCeeEEEee--CCeeEEEE
Q 003840 591 RTFMGHSASVMS-------------------LDFHPNKDDLICSC----DGDGEIRYWSINNGSCTRVFK--GGTAQMRF 645 (792)
Q Consensus 591 ~~~~~h~~~V~s-------------------l~fspd~~~ll~sg----s~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~ 645 (792)
..+..+...... ++|+|+++.+++.. ..+..|++||+.+++...... ..+..+.|
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~ 195 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIY 195 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceE
Confidence 444434332222 34567766554332 456789999999887665543 34667899
Q ss_pred ec-CCCEEEEEEcC------CeEEEEECCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC----e--EEEEECCCCC
Q 003840 646 QP-HLGRYLAAAAE------NVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED----S--VRVWTVGSGS 711 (792)
Q Consensus 646 sp-~~~~lla~s~d------g~I~i~D~~t~~~~~~l~~h-~~~V~sv~~spdg~~Las~s~d----~--I~IwDl~s~~ 711 (792)
+| +++.+++++.+ ..|.+||+..++........ ...+..++|+|+|++|+.++.+ . |++||+.++.
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE 275 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred CCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence 99 67777776653 36899998776543333311 2357889999999977665421 4 9999998763
Q ss_pred CcceEEEeecCCCceEEEEEeC-CCCEEEEEE----------------cCCeEEEEECCCCcEEEEcccCC---------
Q 003840 712 EGECVHELSCNGNKFHSCVFHP-TYPSLLVIG----------------CYQSLELWNMSENKTMTLTAHEG--------- 765 (792)
Q Consensus 712 ~~~~i~~~~~~~~~i~si~fsp-dg~~L~sgs----------------~dg~I~IwDl~~~~~~~~~~h~~--------- 765 (792)
. ..+..+. ... +.|+| ++++|++++ .+..|++||+.+++...+..+..
T Consensus 276 ~-~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~ 349 (396)
T 3c5m_A 276 N-EEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDR 349 (396)
T ss_dssp E-EEEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBS
T ss_pred e-EEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccc
Confidence 2 2222221 133 89999 999888765 23689999999887666655554
Q ss_pred --CeEEEEEeCCCCEEEEEeC-CCcEEEe
Q 003840 766 --LIAALAVSTETGYVASASH-DKFVKLW 791 (792)
Q Consensus 766 --~V~sl~fspdg~~LaSgs~-DG~I~IW 791 (792)
.+..++|+|||++|+.++. ++...||
T Consensus 350 ~~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 350 QITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp STTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred cCCCCCceEccCCCeEEEEecCCCCceEE
Confidence 2567899999998887765 5666666
No 160
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.81 E-value=2e-18 Score=180.30 Aligned_cols=220 Identities=13% Similarity=0.100 Sum_probs=159.3
Q ss_pred EeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEeccc-CCCeEEEEEcCC
Q 003840 530 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPN 608 (792)
Q Consensus 530 gs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h-~~~V~sl~fspd 608 (792)
++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|++||+.+.+.....+..+ ...|.+++|+|+
T Consensus 18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 457899999999988766 4556889999999999999999987 7899999998623444444444 367889999999
Q ss_pred CCeEEEEEe-CCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEE
Q 003840 609 KDDLICSCD-GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 687 (792)
Q Consensus 609 ~~~ll~sgs-~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~ 687 (792)
+..+++++. .++.+.||.++ ..++. ...+..+ ..+.+++|
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~-------------------------------------~~~~~-~~~~~~~-~~~~~~~~ 136 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLP-------------------------------------STGGT-PRLMTKN-LPSYWHGW 136 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEE-------------------------------------TTCCC-CEECCSS-SSEEEEEE
T ss_pred CCEEEEEEeCCCCcceEEEEE-------------------------------------CCCCc-eEEeecC-CCccceEE
Confidence 876654432 23444444332 11111 1112212 24788999
Q ss_pred cCCCCEEE-EEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC--CCcEEEEcc
Q 003840 688 DPSGELLA-SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS--ENKTMTLTA 762 (792)
Q Consensus 688 spdg~~La-s~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~--~~~~~~~~~ 762 (792)
+|++++|+ +++.+ .++||++.... .....+..+...+.+++|+|++++|++++. ++.++||++. .+....+..
T Consensus 137 spdg~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 214 (297)
T 2ojh_A 137 SPDGKSFTYCGIRDQVFDIYSMDIDS--GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD 214 (297)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEETTT--CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred CCCCCEEEEEECCCCceEEEEEECCC--CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence 99999877 55555 88888864321 234556667778999999999998888774 7888888764 455557777
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCC-----------CcEEEeC
Q 003840 763 HEGLIAALAVSTETGYVASASHD-----------KFVKLWK 792 (792)
Q Consensus 763 h~~~V~sl~fspdg~~LaSgs~D-----------G~I~IWd 792 (792)
|...+.+++|+|++++|++++.| +.|++||
T Consensus 215 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d 255 (297)
T 2ojh_A 215 SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD 255 (297)
T ss_dssp CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence 88889999999999999988876 4588885
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=2.7e-18 Score=185.01 Aligned_cols=236 Identities=12% Similarity=0.076 Sum_probs=164.5
Q ss_pred CeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCceeEEeccCC------CCEEEEEECCCCCeEEEEeCC-----------
Q 003840 514 KVICCHFSSDGKLLAT-GGHDKKAVLWHTDTLKSKTNLEEHS------SLITDVRFSPSMPRLATSSFD----------- 575 (792)
Q Consensus 514 ~V~~lafspdg~~Las-gs~Dg~I~vWdl~t~~~~~~l~~h~------~~V~~i~fspdg~~Lasgs~D----------- 575 (792)
.+.+++|+|||+++++ +..++.|++||+.+++.+..+..+. ..+.+++|+|++++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 4678999999986654 4568999999999998887776432 337889999999999998865
Q ss_pred -CcEEEEeCCCCC--ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe------------
Q 003840 576 -KTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT------------ 640 (792)
Q Consensus 576 -g~V~IWdl~s~~--~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~------------ 640 (792)
+.|.+||+.+.. ..+..+. +...+.+++|+|+++ +++ ++ +.|++||+.+++.+..+....
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 198 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCC
T ss_pred CCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccce
Confidence 899999998622 1223333 344688999999988 554 43 449999999998877664321
Q ss_pred ---------------eEEEEecCCCEEEEEE-cCCeEEEEECCCCeE-EEEecCCCCCeEEEEEcC-CCCEEEEEeCCeE
Q 003840 641 ---------------AQMRFQPHLGRYLAAA-AENVVSILDAETQAC-RLSLQGHTKPIDSVCWDP-SGELLASVSEDSV 702 (792)
Q Consensus 641 ---------------~~v~~sp~~~~lla~s-~dg~I~i~D~~t~~~-~~~l~~h~~~V~sv~~sp-dg~~Las~s~d~I 702 (792)
..+.+.+++....... ....+..+|..+++. ...+..+...+.+++|+| ++++|+++ .+.|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v 277 (349)
T 1jmx_B 199 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRL 277 (349)
T ss_dssp CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEE
T ss_pred eeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeE
Confidence 1233333321110000 011222355555532 222333566789999999 99999888 5599
Q ss_pred EEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE
Q 003840 703 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT 759 (792)
Q Consensus 703 ~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~ 759 (792)
++||+.++ +.+..+.. ...+..++|+|++++|++++.++.|++||+.+++.+.
T Consensus 278 ~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 278 AKYDLKQR---KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp EEEETTTT---EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred EEEECccC---eEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceee
Confidence 99999876 45555443 3457789999999999998888999999999988763
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=1.1e-17 Score=183.73 Aligned_cols=244 Identities=12% Similarity=0.072 Sum_probs=174.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeEEeccC-CCCEEEEEECCCCCe--EEEEe-------------
Q 003840 511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEH-SSLITDVRFSPSMPR--LATSS------------- 573 (792)
Q Consensus 511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~-t~~~~~~l~~h-~~~V~~i~fspdg~~--Lasgs------------- 573 (792)
+...+..++|+|||++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 34568899999999999999888 99999997 77665433211 123567899999994 45553
Q ss_pred CCCcEEEEeCCCCCceeEEec----ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeE--EEee-----CCee
Q 003840 574 FDKTVRVWDADNPGYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCT--RVFK-----GGTA 641 (792)
Q Consensus 574 ~Dg~V~IWdl~s~~~~i~~~~----~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~-~~~~~--~~~~-----~~~~ 641 (792)
.+|.+.+|+++..+.....+. .+...+.+++|+|+++.++++...++.|++||+. +++.. ..+. ....
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999985454443333 2456799999999998776555557899999998 67653 2232 2366
Q ss_pred EEEEecCCCEEEEEEc-CCeEEEEECC--CCeEEE---EecC-------CCC------CeEEEE-EcCCCCEEEEEeC--
Q 003840 642 QMRFQPHLGRYLAAAA-ENVVSILDAE--TQACRL---SLQG-------HTK------PIDSVC-WDPSGELLASVSE-- 699 (792)
Q Consensus 642 ~v~~sp~~~~lla~s~-dg~I~i~D~~--t~~~~~---~l~~-------h~~------~V~sv~-~spdg~~Las~s~-- 699 (792)
.++|+|++++++++.. ++.|.+|+++ +++... .+.. |.. .+..++ |+|||++|+++..
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 7899999999988876 6899999765 555432 2221 121 478999 9999998876643
Q ss_pred C-----eEEEEECC-CCCCcceEE-EeecCCCceEEEEEeC---CCCEEEEEEcC-CeEEEEECCCCc
Q 003840 700 D-----SVRVWTVG-SGSEGECVH-ELSCNGNKFHSCVFHP---TYPSLLVIGCY-QSLELWNMSENK 756 (792)
Q Consensus 700 d-----~I~IwDl~-s~~~~~~i~-~~~~~~~~i~si~fsp---dg~~L~sgs~d-g~I~IwDl~~~~ 756 (792)
+ .|.+|++. ++. ...+. ....+...+..++|+| ++++|++++.+ +.|.||+++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp STTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 3 69999996 332 12211 2333444567789999 89999999875 899999987663
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=6.3e-18 Score=203.51 Aligned_cols=263 Identities=12% Similarity=0.067 Sum_probs=190.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC-----EEEEEECCCCCeEEEEeCC---------CcEE
Q 003840 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-----ITDVRFSPSMPRLATSSFD---------KTVR 579 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~-----V~~i~fspdg~~Lasgs~D---------g~V~ 579 (792)
...+++|+|||.+|+++ |+.|++||+.++++...+..|... ..++.|+|||++|++++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 46689999999999886 999999999999988888877543 2448899999999999876 5677
Q ss_pred EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC--------------------
Q 003840 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------------------- 639 (792)
Q Consensus 580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-------------------- 639 (792)
+||+.+ +. +..+..|...+..++|+|||+.++++ .|+.|++||+.++...+....+
T Consensus 96 ~~d~~~-~~-~~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 96 IYDLNK-RQ-LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEETTT-TE-ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEECCC-Cc-EEEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 999987 33 34566778889999999999877654 3789999999988765532211
Q ss_pred -eeEEEEecCCCEEEEEEcCC------------------------------------eEEEEECCC---C---eEEEEec
Q 003840 640 -TAQMRFQPHLGRYLAAAAEN------------------------------------VVSILDAET---Q---ACRLSLQ 676 (792)
Q Consensus 640 -~~~v~~sp~~~~lla~s~dg------------------------------------~I~i~D~~t---~---~~~~~l~ 676 (792)
...+.|+||+++|+.+..|. .|++||+.+ + +......
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~ 251 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA 251 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence 12488999999998875321 588899988 7 3333222
Q ss_pred -----CCCCCeEEEEEcCCCCEEEEEeC----C-eEEEEECCCCC----C--cceEEEeecCCCceE-----EEEEeCCC
Q 003840 677 -----GHTKPIDSVCWDPSGELLASVSE----D-SVRVWTVGSGS----E--GECVHELSCNGNKFH-----SCVFHPTY 735 (792)
Q Consensus 677 -----~h~~~V~sv~~spdg~~Las~s~----d-~I~IwDl~s~~----~--~~~i~~~~~~~~~i~-----si~fspdg 735 (792)
+|...+..++|+|||++++.... + .|++||+.++. . ...+. -..+...+. .++|+|||
T Consensus 252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-EMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-EECSSSCSSSSSCCCCEECTTS
T ss_pred CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-eccCCceEccCcCCCceEcCCC
Confidence 37778999999999996665432 2 69999998875 1 11111 123333333 67899999
Q ss_pred CEEE-EEEcC-C--eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC
Q 003840 736 PSLL-VIGCY-Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 784 (792)
Q Consensus 736 ~~L~-sgs~d-g--~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~ 784 (792)
+.|+ ..+.. | .|++||+.++....+......|..+.+ +|++.|+..+.
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEES
T ss_pred CEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEe
Confidence 9887 66543 3 799999998888777766666776553 44665554443
No 164
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=3.8e-17 Score=184.27 Aligned_cols=195 Identities=11% Similarity=0.131 Sum_probs=143.6
Q ss_pred cCCCCeEEEEEcCCCCEEE----EEeCCCeEEEEECCCC--------ce---eEEeccCCCCEEEEEECCC-CCeEEEEe
Q 003840 510 ASTSKVICCHFSSDGKLLA----TGGHDKKAVLWHTDTL--------KS---KTNLEEHSSLITDVRFSPS-MPRLATSS 573 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~La----sgs~Dg~I~vWdl~t~--------~~---~~~l~~h~~~V~~i~fspd-g~~Lasgs 573 (792)
.|...|++++|+++|++|| +|+.|+.|+|||+.++ +. +..+.+|...|++|+|+|+ +.+|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 4677899999999999999 7888999999998654 22 4556679999999999997 78999999
Q ss_pred CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC----------CeeEE
Q 003840 574 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----------GTAQM 643 (792)
Q Consensus 574 ~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----------~~~~v 643 (792)
.||+|+|||+++ +..+....+|...|++++|+|++.. |++|+.||.|++||++ ++....+.. .+.++
T Consensus 170 ~Dg~v~iwD~~~-~~~~~~~~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v 246 (434)
T 2oit_A 170 ADGSIAVLQVTE-TVKVCATLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV 246 (434)
T ss_dssp TTSCEEEEEESS-SEEEEEEECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred CCCeEEEEEcCC-CcceeeccCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence 999999999997 4555566678999999999999764 5589999999999998 554444321 45678
Q ss_pred EEecCCCEEEEEE-cCC------eEEEEECCCCe-----EEEEec-------CCCCCeEEEEEcCCCCEEEEEeCC--eE
Q 003840 644 RFQPHLGRYLAAA-AEN------VVSILDAETQA-----CRLSLQ-------GHTKPIDSVCWDPSGELLASVSED--SV 702 (792)
Q Consensus 644 ~~sp~~~~lla~s-~dg------~I~i~D~~t~~-----~~~~l~-------~h~~~V~sv~~spdg~~Las~s~d--~I 702 (792)
.|++++.++++.+ .+| .+++||+++.+ ....+. +...+...+.+.++.+++++++.. .|
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv 326 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEV 326 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBC
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCce
Confidence 8998766554433 333 38999998642 112221 122233345555777877777654 56
Q ss_pred EEEEC
Q 003840 703 RVWTV 707 (792)
Q Consensus 703 ~IwDl 707 (792)
.|+..
T Consensus 327 ~vl~~ 331 (434)
T 2oit_A 327 SILAR 331 (434)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 66654
No 165
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.79 E-value=1.7e-18 Score=202.08 Aligned_cols=229 Identities=13% Similarity=0.076 Sum_probs=175.0
Q ss_pred CCCCEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCceeEEecccC-CCeEEEEEcCCCCeEEEEEeC---CCcEEEEEc
Q 003840 553 HSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDG---DGEIRYWSI 627 (792)
Q Consensus 553 h~~~V~~i~fspdg~~Lasgs~-Dg~V~IWdl~s~~~~i~~~~~h~-~~V~sl~fspd~~~ll~sgs~---Dg~I~iwdl 627 (792)
+...|++++|+|||++||+++. ||+++||+++. + ....+..+. ..|.+++|+|+ .++++++. +...++|.+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~-g-~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG-G-ETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEET-T-EEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcC-C-CcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEE
Confidence 3567999999999999999887 99999999854 4 445555555 68999999998 57767664 455566554
Q ss_pred CC---CeeEEEe-eCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--
Q 003840 628 NN---GSCTRVF-KGGTAQMRFQPHLGR-YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-- 700 (792)
Q Consensus 628 ~~---~~~~~~~-~~~~~~v~~sp~~~~-lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-- 700 (792)
.. +...... .......+|+++++. +++.+.++.+.+||+.+++.......+. .+++|+|||++|++++.+
T Consensus 96 ~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 96 NTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp ETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred eccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence 33 2222211 123446789999875 4455556666799999987665554333 789999999999976543
Q ss_pred ---eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEEcccCCCeEEEE----
Q 003840 701 ---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMTLTAHEGLIAALA---- 771 (792)
Q Consensus 701 ---~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg--~I~IwDl~~~~~~~~~~h~~~V~sl~---- 771 (792)
.|++||+.++. ...+..+...+..++|+|||++|+++..++ .|++||+.+++...+..|...+..++
T Consensus 173 ~~~~i~~~d~~~g~----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 173 GRVSLFTSNLSSGG----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAI 248 (582)
T ss_dssp TEEEEEEEETTTCC----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEE
T ss_pred CCeEEEEEcCCCCC----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccc
Confidence 69999998763 235566778899999999999999888888 89999999998876667777777777
Q ss_pred ----EeCCCCEEEEEeCCCcEEEeC
Q 003840 772 ----VSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 772 ----fspdg~~LaSgs~DG~I~IWd 792 (792)
|+|||.++++++.||.++||+
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEE
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEE
Confidence 999999999999999999995
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=1.9e-17 Score=199.39 Aligned_cols=306 Identities=12% Similarity=0.069 Sum_probs=200.0
Q ss_pred ceEEEEeCCCeeeec-CCCeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeeeee
Q 003840 431 PLMMFGTDGAGTLTS-PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVR 509 (792)
Q Consensus 431 ~~l~~s~Dg~~~~ss-~s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~l~ 509 (792)
..+.|++||.+++++ +...+||+.+++....+.. .. +.
T Consensus 20 ~~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~~~~----~~-------------------------------------~~ 58 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQENNILVFNAEYGNSSVFLEN----ST-------------------------------------FD 58 (740)
T ss_dssp CCEEECSSSEEEEEETTEEEEEETTTCCEEEEECT----TT-------------------------------------TT
T ss_pred cccEECCCCcEEEEcCCcEEEEECCCCceEEEEec----hh-------------------------------------hh
Confidence 357999999988775 2337899888764321110 00 00
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHD---------KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~D---------g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I 580 (792)
.+......++|||||++|+.++.+ +.+++||+.+++.. .+..|...+..++|+|||+.||.+. |+.|++
T Consensus 59 ~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~ 136 (740)
T 4a5s_A 59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYV 136 (740)
T ss_dssp TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEE
T ss_pred hhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEE
Confidence 111123458899999999998876 56779999998754 4667788899999999999999884 688999
Q ss_pred EeCCCCCceeEEecccCCCe-----------------EEEEEcCCCCeEEEEEeCCC-----------------------
Q 003840 581 WDADNPGYSLRTFMGHSASV-----------------MSLDFHPNKDDLICSCDGDG----------------------- 620 (792)
Q Consensus 581 Wdl~s~~~~i~~~~~h~~~V-----------------~sl~fspd~~~ll~sgs~Dg----------------------- 620 (792)
||+.++.....+..++...+ .++.|+|||+.|++....++
T Consensus 137 ~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred EECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 99987432222222333323 35899999987776543222
Q ss_pred ------------cEEEEEcCC---C---eeEEEee--------CCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCe
Q 003840 621 ------------EIRYWSINN---G---SCTRVFK--------GGTAQMRFQPHLGRYLAAAAE----NVVSILDAETQA 670 (792)
Q Consensus 621 ------------~I~iwdl~~---~---~~~~~~~--------~~~~~v~~sp~~~~lla~s~d----g~I~i~D~~t~~ 670 (792)
.|++||+.+ + +...... ..+..+.|+|++..++..... ..|.+||+.+++
T Consensus 217 ~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp ECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred cCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 588899988 7 3333211 124568899998866655442 379999998876
Q ss_pred ----EEE--Ee--cCCCCCeE-----EEEEcCCCCEEE-EEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEe
Q 003840 671 ----CRL--SL--QGHTKPID-----SVCWDPSGELLA-SVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 732 (792)
Q Consensus 671 ----~~~--~l--~~h~~~V~-----sv~~spdg~~La-s~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fs 732 (792)
+.. .+ ..|...|. .+.|+|||+.|+ ..+++ .|++||+..+. + ..+......+..+.+
T Consensus 297 ~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~---~-~~lT~g~~~v~~~~~- 371 (740)
T 4a5s_A 297 GRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD---C-TFITKGTWEVIGIEA- 371 (740)
T ss_dssp TEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS---C-EESCCSSSCEEEEEE-
T ss_pred cccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc---e-EecccCCEEEEEEEE-
Confidence 221 11 44666555 789999999776 66533 69999987642 2 233333444555432
Q ss_pred CCCCEEEEEEcC-------CeEEEEECCCCcEE-EEcc----cCCCeEEEEEeCCCCEEEEEeC
Q 003840 733 PTYPSLLVIGCY-------QSLELWNMSENKTM-TLTA----HEGLIAALAVSTETGYVASASH 784 (792)
Q Consensus 733 pdg~~L~sgs~d-------g~I~IwDl~~~~~~-~~~~----h~~~V~sl~fspdg~~LaSgs~ 784 (792)
+|++.|+..+.. ..|+..++.++... .+.. ....+..+.|++++++++....
T Consensus 372 ~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s 435 (740)
T 4a5s_A 372 LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS 435 (740)
T ss_dssp ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeC
Confidence 457777766654 25666666655543 2321 2356889999999998765543
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=1.2e-16 Score=175.54 Aligned_cols=263 Identities=11% Similarity=0.061 Sum_probs=194.9
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceeEEeccC------CCCEEEEEECCCCC
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEH------SSLITDVRFSPSMP 567 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~----------Dg~I~vWdl~t~~~~~~l~~h------~~~V~~i~fspdg~ 567 (792)
.+..+..+..+ .++|+|||++|++++. ++.|.+||+.+++.+.++... ......++|+|||+
T Consensus 43 ~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~ 120 (361)
T 2oiz_A 43 FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK 120 (361)
T ss_dssp EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS
T ss_pred EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC
Confidence 44556666554 8999999999999863 678999999999988887643 34567899999999
Q ss_pred eEEEEeC--CCcEEEEeCCCCCceeEE-ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEEe------e
Q 003840 568 RLATSSF--DKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVF------K 637 (792)
Q Consensus 568 ~Lasgs~--Dg~V~IWdl~s~~~~i~~-~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~~------~ 637 (792)
+|+++.. ++.|.+||+.+ .+.+.. +. .. ....+.+.|++...+++.+.||.+.+|++.. ++..... .
T Consensus 121 ~l~v~n~~~~~~v~v~d~~~-~~~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~ 197 (361)
T 2oiz_A 121 FIVLQNASPATSIGIVDVAK-GDYVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFS 197 (361)
T ss_dssp EEEEEEESSSEEEEEEETTT-TEEEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSC
T ss_pred EEEEECCCCCCeEEEEECCC-CcEEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEc
Confidence 9998874 57899999997 555555 43 22 2334667888767777888999999999875 5544221 1
Q ss_pred C--CeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEecCC------C----CCeEEEEEcCCCCEEEEEeC----
Q 003840 638 G--GTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGH------T----KPIDSVCWDPSGELLASVSE---- 699 (792)
Q Consensus 638 ~--~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~--~~~~l~~h------~----~~V~sv~~spdg~~Las~s~---- 699 (792)
. ....+.+.+++..++..+.++.|+++|+.... .+..+... . .....++|++++++++++..
T Consensus 198 ~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~ 277 (361)
T 2oiz_A 198 VKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK 277 (361)
T ss_dssp TTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred CCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence 1 11223446777788888889999999987553 22222110 0 11223789999887776532
Q ss_pred -------C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC--cEEEE-cccCCCeE
Q 003840 700 -------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN--KTMTL-TAHEGLIA 768 (792)
Q Consensus 700 -------d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~--~~~~~-~~h~~~V~ 768 (792)
. .|.+||+.+. +.+..+..+. +..++|+|||++|++++. +.|.+||..++ +.+.. ..+.....
T Consensus 278 ~~~~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~ 351 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASL 351 (361)
T ss_dssp TTCTTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEE
T ss_pred cccccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcE
Confidence 2 7999999876 7777777766 999999999999998887 99999999999 88754 57788889
Q ss_pred EEEEeCCCC
Q 003840 769 ALAVSTETG 777 (792)
Q Consensus 769 sl~fspdg~ 777 (792)
.++|+|+|+
T Consensus 352 ~~~~~p~G~ 360 (361)
T 2oiz_A 352 QVQFHPVGG 360 (361)
T ss_dssp EEEECCCSC
T ss_pred EEEecCCCC
Confidence 999999985
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=6.6e-17 Score=177.69 Aligned_cols=262 Identities=9% Similarity=0.043 Sum_probs=188.2
Q ss_pred CCCEEEEEe------CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC----------CCcEEEEeCCCC
Q 003840 523 DGKLLATGG------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNP 586 (792)
Q Consensus 523 dg~~Lasgs------~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~----------Dg~V~IWdl~s~ 586 (792)
+++++++.. .|+.|++||..+++.+..+..+..+ .++|+||+++|++++. ++.|.+||+.+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t- 90 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK- 90 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT-
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC-
Confidence 455555543 3789999999999998888876554 8999999999998863 67799999987
Q ss_pred CceeEEeccc------CCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeEEE-eeCC-eeEEEEecCC-CEEEEEE
Q 003840 587 GYSLRTFMGH------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRV-FKGG-TAQMRFQPHL-GRYLAAA 656 (792)
Q Consensus 587 ~~~i~~~~~h------~~~V~sl~fspd~~~ll~sgs~-Dg~I~iwdl~~~~~~~~-~~~~-~~~v~~sp~~-~~lla~s 656 (792)
.+.+..+... ......++|+|++++++++... ++.|.+||+.+++.+.. +... ...+.+.|++ ..+++.+
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC
Confidence 5556555432 2456789999999887766554 78999999999998877 5532 2235567765 5677888
Q ss_pred cCCeEEEEECCC-CeEEEE------ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC-----
Q 003840 657 AENVVSILDAET-QACRLS------LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG----- 723 (792)
Q Consensus 657 ~dg~I~i~D~~t-~~~~~~------l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~----- 723 (792)
.||.+.+|+.+. ++.... +..+..++ .+.+++++..++..+.+ .|.+||+.... ...+..+....
T Consensus 171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~-~~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE-VKVDGPWSLLNDEDKA 248 (361)
T ss_dssp TTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS-CEEEEEEESCCHHHHH
T ss_pred CCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC-ceecccccccCccccc
Confidence 899999999865 554422 22222222 23345677777777766 99999997542 12222221110
Q ss_pred -----CceEEEEEeCCCCEEEEEEc-----------CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 003840 724 -----NKFHSCVFHPTYPSLLVIGC-----------YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDK 786 (792)
Q Consensus 724 -----~~i~si~fspdg~~L~sgs~-----------dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG 786 (792)
.....++|+|+++.++++.. .+.|.+||+.+++.+ .+..+. +.+++|+|||++|++++. +
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-G 325 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-S
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-C
Confidence 11123789999998888764 348999999999988 455555 999999999999998887 9
Q ss_pred cEEEeC
Q 003840 787 FVKLWK 792 (792)
Q Consensus 787 ~I~IWd 792 (792)
.|.|||
T Consensus 326 ~v~v~D 331 (361)
T 2oiz_A 326 NVNVYD 331 (361)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 999996
No 169
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=2.7e-17 Score=180.74 Aligned_cols=239 Identities=13% Similarity=0.104 Sum_probs=162.9
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEE--ECCCCCeEEEE---------------
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR--FSPSMPRLATS--------------- 572 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~--fspdg~~Lasg--------------- 572 (792)
++...+.+++|+|||++|++++.++.|++||+.+++....+..+...+.... +++++++|+..
T Consensus 78 ~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~ 157 (388)
T 3pe7_A 78 GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK 157 (388)
T ss_dssp SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccch
Confidence 3344444678999999999999999999999999988877777766665544 48999988743
Q ss_pred -------eCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcC-CCCeEEEEEeC-----CCcEEEEEcCCCeeEEEeeC-
Q 003840 573 -------SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP-NKDDLICSCDG-----DGEIRYWSINNGSCTRVFKG- 638 (792)
Q Consensus 573 -------s~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fsp-d~~~ll~sgs~-----Dg~I~iwdl~~~~~~~~~~~- 638 (792)
..+..|++||+.+ +. ...+..+...+..++|+| ++..++++... +..|++||+..+........
T Consensus 158 ~~~~~~~~~~~~l~~~d~~~-g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 235 (388)
T 3pe7_A 158 FHEFYFTKPCCRLMRVDLKT-GE-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHA 235 (388)
T ss_dssp HHHHGGGCCCEEEEEEETTT-CC-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCC
T ss_pred hhhhhccCCcceEEEEECCC-Cc-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCC
Confidence 2446799999987 33 445556777899999999 88766655542 34788888876654443332
Q ss_pred ---CeeEEEEecCCCEEEEEEc-CC----eEEEEECCCCeEEE--EecCCCC---CeEEEEEcCCCCEEEEE--------
Q 003840 639 ---GTAQMRFQPHLGRYLAAAA-EN----VVSILDAETQACRL--SLQGHTK---PIDSVCWDPSGELLASV-------- 697 (792)
Q Consensus 639 ---~~~~v~~sp~~~~lla~s~-dg----~I~i~D~~t~~~~~--~l~~h~~---~V~sv~~spdg~~Las~-------- 697 (792)
.+..+.|+|+++.|+..+. ++ .|++||+.+++... .+.++.. ....++|+|||++|+..
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 315 (388)
T 3pe7_A 236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK 315 (388)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------
T ss_pred CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc
Confidence 2445789999998866554 22 39999999986433 3332100 01123799999987754
Q ss_pred -eCC-eEEEEECCCCCCcceEEEeecCCC-----------ceEEEEEeCCCCEEEEEEc-CCe--EEEEECCC
Q 003840 698 -SED-SVRVWTVGSGSEGECVHELSCNGN-----------KFHSCVFHPTYPSLLVIGC-YQS--LELWNMSE 754 (792)
Q Consensus 698 -s~d-~I~IwDl~s~~~~~~i~~~~~~~~-----------~i~si~fspdg~~L~sgs~-dg~--I~IwDl~~ 754 (792)
..+ .|++||+.++. +..+..+.. .+..++|+|||++|++++. ++. |+++++.+
T Consensus 316 ~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 316 IENDPFLYVFNMKNGT----QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp -CCCCEEEEEETTTTE----EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred cCCCCEEEEEeccCCc----eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 334 89999998752 233444444 4678899999998887775 454 44445543
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.76 E-value=4.3e-17 Score=192.96 Aligned_cols=280 Identities=13% Similarity=0.102 Sum_probs=195.3
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEE--eCCCeEEEEECCCCceeEEeccCCCCEE---------EEEEC--CCCCe-EEEE
Q 003840 507 SVRASTSKVICCHFSSDGKLLATG--GHDKKAVLWHTDTLKSKTNLEEHSSLIT---------DVRFS--PSMPR-LATS 572 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasg--s~Dg~I~vWdl~t~~~~~~l~~h~~~V~---------~i~fs--pdg~~-Lasg 572 (792)
.+.+|...|.+++|++++-+++.. +.++...||....+.....+..|...+. .+.|+ ||+++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 456788999999999887666666 5588999999765566677777766666 56665 99998 7766
Q ss_pred eC-CCcEEEEeCCCCC-ceeEEecc-----cCCCeEEEEEcCCCCeEEEEEeCC----------CcEEEEEcCC------
Q 003840 573 SF-DKTVRVWDADNPG-YSLRTFMG-----HSASVMSLDFHPNKDDLICSCDGD----------GEIRYWSINN------ 629 (792)
Q Consensus 573 s~-Dg~V~IWdl~s~~-~~i~~~~~-----h~~~V~sl~fspd~~~ll~sgs~D----------g~I~iwdl~~------ 629 (792)
+. +..|++|++...+ .....+.. |...+.+++|+|||+.++++. .| ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMA-EEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEE-EEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEE-ecccCCCCCCceeEEEEEECCCCccccC
Confidence 54 5566666665101 33455555 667889999999998776554 34 5899999988
Q ss_pred CeeEEEe-e--CCeeEEEEecCCCEEEEEEcC--------CeEEEEECC-CC---eEEEEecCCCCCeEEEEEcCCCCEE
Q 003840 630 GSCTRVF-K--GGTAQMRFQPHLGRYLAAAAE--------NVVSILDAE-TQ---ACRLSLQGHTKPIDSVCWDPSGELL 694 (792)
Q Consensus 630 ~~~~~~~-~--~~~~~v~~sp~~~~lla~s~d--------g~I~i~D~~-t~---~~~~~l~~h~~~V~sv~~spdg~~L 694 (792)
++..... . .....++|+|++++|++++.+ ..|++||+. ++ +.......|...+..++|+|||+++
T Consensus 177 ~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~ 256 (662)
T 3azo_A 177 SAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLI 256 (662)
T ss_dssp GGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEE
T ss_pred CceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEE
Confidence 5554433 2 234557899999999888754 379999999 56 4444445567889999999999977
Q ss_pred EEEeCC---eEEEEECCCCCCcceEEEeecCCCc--------eEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcEEEEc
Q 003840 695 ASVSED---SVRVWTVGSGSEGECVHELSCNGNK--------FHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTMTLT 761 (792)
Q Consensus 695 as~s~d---~I~IwDl~s~~~~~~i~~~~~~~~~--------i~si~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~~~~ 761 (792)
+++..+ .|++||+.++ ........+... +..++|++++.+++++.. +.++|| |+.+++...+.
T Consensus 257 ~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~ 332 (662)
T 3azo_A 257 VATDRTGWWNLHRVDPATG---AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAA 332 (662)
T ss_dssp EEECTTSSCEEEEECTTTC---CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECC
T ss_pred EEECCCCCeEEEEEECCCC---ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEec
Confidence 777665 5666666544 222222221111 457899999999999888 888888 77777766777
Q ss_pred ccCCCeEEE-EEeCCCCEEEEEeCCCcEEEe
Q 003840 762 AHEGLIAAL-AVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 762 ~h~~~V~sl-~fspdg~~LaSgs~DG~I~IW 791 (792)
.|...+..+ +++.+.-++++++.+....||
T Consensus 333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred CCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 787778877 554443344455556555555
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=3.4e-16 Score=169.33 Aligned_cols=239 Identities=13% Similarity=0.114 Sum_probs=181.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC------------------------CeEEEEECCCCceeEEec-cCCCCEEEEEECCCC
Q 003840 512 TSKVICCHFSSDGKLLATGGHD------------------------KKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSM 566 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~D------------------------g~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspdg 566 (792)
-+.|.+|+|+++|+++++...+ +.|++||.++++.+..+. .+......|+|++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4569999999999999888777 479999999998877665 455679999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCCceeEEe---------cccCCCeEEEEEcCCCCeEEEEEe-CCCcEEEEEcCCCeeEEEe
Q 003840 567 PRLATSSFDKTVRVWDADNPGYSLRTF---------MGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVF 636 (792)
Q Consensus 567 ~~Lasgs~Dg~V~IWdl~s~~~~i~~~---------~~h~~~V~sl~fspd~~~ll~sgs-~Dg~I~iwdl~~~~~~~~~ 636 (792)
+++++...++.|++||.+.....+..+ ..+.....+|+|+|++..++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999987532245555 244557899999995455666775 689999999 556666655
Q ss_pred e-------------CCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcC------CCCEE
Q 003840 637 K-------------GGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQ--GHTKPIDSVCWDP------SGELL 694 (792)
Q Consensus 637 ~-------------~~~~~v~~sp~~~~lla~s-~dg~I~i~D~~t~~~~~~l~--~h~~~V~sv~~sp------dg~~L 694 (792)
. .....++++++++.++++. .++.|++||.++++.+..+. .+...+.+++|+| +|+.+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~ 261 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPY 261 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEE
Confidence 3 1256799999966665555 57899999999888888874 3566789999999 33322
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 695 ASVSED-SVRVWTVGSGSEGECVHEL---SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 695 as~s~d-~I~IwDl~s~~~~~~i~~~---~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
++...+ .|++||+.++ ..+..+ ..+...+..++++|+|..+++...++.|++|++..
T Consensus 262 v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred eccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 222333 7999999877 555555 35566789999999997666667788999999754
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=4e-16 Score=168.75 Aligned_cols=251 Identities=12% Similarity=0.082 Sum_probs=175.8
Q ss_pred CeEEEEEcCCCCEEEEEe---------CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC---Cc--EE
Q 003840 514 KVICCHFSSDGKLLATGG---------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KT--VR 579 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs---------~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D---g~--V~ 579 (792)
.+..++| ||++||... .++.|++||+++++... + ..+.+++|+|||++|++++.+ +. |+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 4677777 898887653 25689999999887543 3 568899999999999888754 33 77
Q ss_pred EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeC--------------------------CCcEEEEEcCCCeeE
Q 003840 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--------------------------DGEIRYWSINNGSCT 633 (792)
Q Consensus 580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~--------------------------Dg~I~iwdl~~~~~~ 633 (792)
+||+.+ +...... .+.. +.+++|+|+++.+++++.. ...|++||+.+++.+
T Consensus 89 ~~~~~~-g~~~~l~-~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 89 VADLET-LSSKKIL-EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEETTT-TEEEEEE-EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEECCC-CceEEEE-cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 788875 4433333 3334 9999999999887766533 357999999988763
Q ss_pred EEee-CCeeEEEEecCCCEEEEEEcCC---------eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---
Q 003840 634 RVFK-GGTAQMRFQPHLGRYLAAAAEN---------VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--- 700 (792)
Q Consensus 634 ~~~~-~~~~~v~~sp~~~~lla~s~dg---------~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--- 700 (792)
..+. ..+..+.|+|++ .++++..++ .|.++| +++... +..+ ..+.++ +|+|++|+.++.+
T Consensus 166 ~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~-l~~~-~~~~~~--spdg~~l~~~~~~~~~ 238 (347)
T 2gop_A 166 EEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEK-MFEK-VSFYAV--DSDGERILLYGKPEKK 238 (347)
T ss_dssp EEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEE-EEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred eeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEE-eccC-cceeeE--CCCCCEEEEEEccccC
Confidence 3332 266788999998 666555432 455556 554433 3333 445444 8999988776632
Q ss_pred ------eEEEEECCCCCCcceEEEeecCCCceEE-EEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEe
Q 003840 701 ------SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 773 (792)
Q Consensus 701 ------~I~IwDl~s~~~~~~i~~~~~~~~~i~s-i~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fs 773 (792)
.|++|| ++ ........+...+.. +.|+ ++ .+++++.++.++|| +.+++...+..+...|.+++|+
T Consensus 239 ~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s 310 (347)
T 2gop_A 239 YMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVD 310 (347)
T ss_dssp CCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEES
T ss_pred CccccceEEEEC--CC---ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeee
Confidence 577777 33 233333444567776 8999 88 88888999999999 8777766666678889999999
Q ss_pred CCCCEEEEEeCCCcE-EEe
Q 003840 774 TETGYVASASHDKFV-KLW 791 (792)
Q Consensus 774 pdg~~LaSgs~DG~I-~IW 791 (792)
+ .++++++.++.. .||
T Consensus 311 ~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 311 E--IVVYLKETATRLRELF 327 (347)
T ss_dssp S--SEEEEEECSSSCCEEE
T ss_pred C--cEEEEEcCCCChHHhe
Confidence 9 677777777654 555
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.74 E-value=4.8e-16 Score=167.42 Aligned_cols=266 Identities=11% Similarity=0.087 Sum_probs=188.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003840 513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 592 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~ 592 (792)
..|.+++|++++..++..+.++.+++| .++....+..+...+.+++|++++++++++..++.|++||..+ +.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~-~~~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC-CcEEEE
Confidence 447788899988888777888899999 4556677777878899999999999888888899999999986 443333
Q ss_pred ecccCCCeEEEEEcCCCCeEEEEEeCC----CcEEEEEcCCCeeEEEee-----CCeeEEEEecCCCEEEEEEc------
Q 003840 593 FMGHSASVMSLDFHPNKDDLICSCDGD----GEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAA------ 657 (792)
Q Consensus 593 ~~~h~~~V~sl~fspd~~~ll~sgs~D----g~I~iwdl~~~~~~~~~~-----~~~~~v~~sp~~~~lla~s~------ 657 (792)
...+...+.+++|++++. ++++...+ +.|.+||..++.....+. ..+..+++++++..+++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 335667899999999976 55455555 689999998877653332 24567899998765555443
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCC-CCCcceE-----EEeecCCCceEEE
Q 003840 658 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGS-GSEGECV-----HELSCNGNKFHSC 729 (792)
Q Consensus 658 dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s-~d-~I~IwDl~s-~~~~~~i-----~~~~~~~~~i~si 729 (792)
.+.|..||.++++...... +...+..++|++++++|+.+. .+ .|++||+.+ +.....+ ..+.. ...+..+
T Consensus 161 ~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i 238 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSC 238 (333)
T ss_dssp CEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEE
T ss_pred CceEEEEeCCCCEEEEeec-CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCce
Confidence 3577788877655443222 234578999999998665554 34 899999964 2221111 11111 2467889
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC------CeEEEEEeCCCCEEEEEeCC
Q 003840 730 VFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG------LIAALAVSTETGYVASASHD 785 (792)
Q Consensus 730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~------~V~sl~fspdg~~LaSgs~D 785 (792)
++++++.++++...++.|.+||........+..+.. .+.+++|++|++.|+.++.+
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999999977777778899999985433334433322 68999999998777666655
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=1.6e-14 Score=167.75 Aligned_cols=286 Identities=12% Similarity=0.068 Sum_probs=208.6
Q ss_pred eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeEEeccCCCCEEEEEEC----CCCCeEEEEeC-C
Q 003840 503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFS----PSMPRLATSSF-D 575 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~--t~~~~~~l~~h~~~V~~i~fs----pdg~~Lasgs~-D 575 (792)
+.+..+... ..+.+++|+|||++|++++.|+.|.+||+. +++.+.++.... ....++|+ |||++++++++ +
T Consensus 188 ~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~ 265 (567)
T 1qks_A 188 EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWP 265 (567)
T ss_dssp CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEET
T ss_pred eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccC
Confidence 344444433 357799999999999999999999999996 888888887543 46899999 69998887765 5
Q ss_pred CcEEEEeCCCCCceeEEecc----------c-CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE--ee--CCe
Q 003840 576 KTVRVWDADNPGYSLRTFMG----------H-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FK--GGT 640 (792)
Q Consensus 576 g~V~IWdl~s~~~~i~~~~~----------h-~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~~--~~~ 640 (792)
+.|.|||..+ .+.+..+.. | ...+..|.+++++..+++....+|.|.++|....+.+.. +. ...
T Consensus 266 ~~v~ViD~~t-~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~ 344 (567)
T 1qks_A 266 PQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFL 344 (567)
T ss_dssp TEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSE
T ss_pred CeEEEEECCC-CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccc
Confidence 8999999887 555555432 1 226788999999888888888889999999987643322 22 244
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecC-----CCCCeEEEEEcCCCC-EEEEEe-C-CeEEEEECCCCC
Q 003840 641 AQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-----HTKPIDSVCWDPSGE-LLASVS-E-DSVRVWTVGSGS 711 (792)
Q Consensus 641 ~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~-----h~~~V~sv~~spdg~-~Las~s-~-d~I~IwDl~s~~ 711 (792)
..+.|++++.++++++. ++.|.++|+.+++.+..+.. |.+....+ ++|++. +++++. . +.|.+||..+..
T Consensus 345 ~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~ 423 (567)
T 1qks_A 345 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEG 423 (567)
T ss_dssp EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred cCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCC
Confidence 56889999999888775 78999999999988776653 33222222 578754 445553 2 399999998632
Q ss_pred C----cceEEEeecCCCceEEEEEeCCCCEEEEEEc-------CCeEEEEECCCC-----c-E-EEEc--------ccCC
Q 003840 712 E----GECVHELSCNGNKFHSCVFHPTYPSLLVIGC-------YQSLELWNMSEN-----K-T-MTLT--------AHEG 765 (792)
Q Consensus 712 ~----~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-------dg~I~IwDl~~~-----~-~-~~~~--------~h~~ 765 (792)
. .+.+..+......-..+.++|+++++++... .+.|.|||+.+. . . ..+. ....
T Consensus 424 ~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 503 (567)
T 1qks_A 424 HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQP 503 (567)
T ss_dssp CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCC
T ss_pred CccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCc
Confidence 2 4677777765544455778999999998773 359999999876 2 1 1221 1245
Q ss_pred CeEEEEEeCCCCEEEEEeC-----CCcEEEeC
Q 003840 766 LIAALAVSTETGYVASASH-----DKFVKLWK 792 (792)
Q Consensus 766 ~V~sl~fspdg~~LaSgs~-----DG~I~IWd 792 (792)
.+..+.|+++|++|..+.. ++.|.|+|
T Consensus 504 ~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 504 RVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp EEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred ceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 7899999999998776643 68888875
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=5.3e-15 Score=155.72 Aligned_cols=232 Identities=12% Similarity=0.129 Sum_probs=170.7
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec------ccCCCeEEEEEcCCCCeEEEEEeC-CCcEEE
Q 003840 552 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM------GHSASVMSLDFHPNKDDLICSCDG-DGEIRY 624 (792)
Q Consensus 552 ~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~------~h~~~V~sl~fspd~~~ll~sgs~-Dg~I~i 624 (792)
++-..+.+|++++++.++++...++.|.+||.+ +..+..+. ++...+.++++.+.+..++++... ++.|++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~--g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC--CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 455678999999999988888889999999987 34455543 234578999995333456655543 899999
Q ss_pred EEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEEe
Q 003840 625 WSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVS 698 (792)
Q Consensus 625 wdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~--~h~~~V~sv~~spdg~~Las~s 698 (792)
|| .+++.+..+. .....+++.+++..+++...++.|.+||.. ++.+..+. .+...+.+|+++++|+++++..
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 99 5666666653 246678999998766665668899999965 45555553 3455689999999999887776
Q ss_pred CC-eEEEEECCCCCCcceEEEeecC--CCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEEEEcccC--CCeEEEEE
Q 003840 699 ED-SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTMTLTAHE--GLIAALAV 772 (792)
Q Consensus 699 ~d-~I~IwDl~s~~~~~~i~~~~~~--~~~i~si~fspdg~~L~sgs~dg-~I~IwDl~~~~~~~~~~h~--~~V~sl~f 772 (792)
.+ .|++||... ..+..+... ...+..+++++++.++++...++ .|.+||........+..+. ..+.+++|
T Consensus 183 ~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 183 RAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp GGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEE
T ss_pred CCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEE
Confidence 66 999999743 344455433 35688999999998777777775 9999997544443444433 34789999
Q ss_pred eCCCCEEEEEeCCCcEEEeC
Q 003840 773 STETGYVASASHDKFVKLWK 792 (792)
Q Consensus 773 spdg~~LaSgs~DG~I~IWd 792 (792)
+++|+++++ +.|++|+||+
T Consensus 259 ~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 259 MDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp ETTTEEEEE-ETTTEEEEEE
T ss_pred CCCCcEEEE-CCCCeEEEEE
Confidence 999987776 6799999995
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=2.4e-16 Score=173.06 Aligned_cols=234 Identities=11% Similarity=0.071 Sum_probs=161.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEE-------------------EEECCCCCeEEEE-----
Q 003840 517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD-------------------VRFSPSMPRLATS----- 572 (792)
Q Consensus 517 ~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~-------------------i~fspdg~~Lasg----- 572 (792)
++.|+|||++|+.++.++.|++||+.+++....+..+.....+ +.|+|+++.++.+
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 4789999999999999999999999998876666555543333 4567888877655
Q ss_pred eCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcC-CCCeEEEEEeCC-----CcEEEEEcCCCeeEEEeeC----CeeE
Q 003840 573 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP-NKDDLICSCDGD-----GEIRYWSINNGSCTRVFKG----GTAQ 642 (792)
Q Consensus 573 s~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fsp-d~~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~~----~~~~ 642 (792)
..+..|++||+.+ +.. ..+..+...+..+.|+| ++..++++.... ..|++||+..++....... .+..
T Consensus 165 ~~~~~l~~~d~~~-g~~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 242 (396)
T 3c5m_A 165 NPTCRLIKVDIET-GEL-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTH 242 (396)
T ss_dssp CCCEEEEEEETTT-CCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEE
T ss_pred CCcceEEEEECCC-CcE-EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccc
Confidence 3567899999987 333 33335677899999999 666565544322 4689999876654443332 2455
Q ss_pred EEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEe----------------CC
Q 003840 643 MRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVS----------------ED 700 (792)
Q Consensus 643 v~~sp~~~~lla~s~d-----g~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp-dg~~Las~s----------------~d 700 (792)
+.|+|++.+|++++.+ +.|++||+.+++....... . .+. +.|+| +|++|++++ .+
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 7999999988777654 4499999998865443321 1 233 89999 999888754 23
Q ss_pred -eEEEEECCCCCCcceEEEeecCCC-----------ceEEEEEeCCCCEEEEEEcC-C--eEEEEECCCCcEEE
Q 003840 701 -SVRVWTVGSGSEGECVHELSCNGN-----------KFHSCVFHPTYPSLLVIGCY-Q--SLELWNMSENKTMT 759 (792)
Q Consensus 701 -~I~IwDl~s~~~~~~i~~~~~~~~-----------~i~si~fspdg~~L~sgs~d-g--~I~IwDl~~~~~~~ 759 (792)
.|++||+.++.. .. +..+.. .+..++|+|++++|++++.+ + .|+++|+.++....
T Consensus 320 ~~i~~~d~~~~~~-~~---l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~ 389 (396)
T 3c5m_A 320 PFLYVLNTKAKSA-QK---LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHL 389 (396)
T ss_dssp CEEEEEETTTTBC-CE---EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC--
T ss_pred CcEEEEecccCce-EE---ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccccc
Confidence 899999987632 22 222222 25567899999998888764 4 46666777666543
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=7.1e-15 Score=154.72 Aligned_cols=236 Identities=10% Similarity=0.125 Sum_probs=174.3
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec------cCCCCEEEEEE-CCCCCeEEEEeC-CCcEEE
Q 003840 509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE------EHSSLITDVRF-SPSMPRLATSSF-DKTVRV 580 (792)
Q Consensus 509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~------~h~~~V~~i~f-spdg~~Lasgs~-Dg~V~I 580 (792)
.++-..+.+++++++|+++++...++.|.+||.+ ++.+..+. ++...+.++++ .+++.++++... ++.|++
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3555679999999999988888889999999987 56666554 24467899999 567766666543 889999
Q ss_pred EeCCCCCceeEEec-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----CCeeEEEEecCCCEEEE
Q 003840 581 WDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLA 654 (792)
Q Consensus 581 Wdl~s~~~~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~~~~~v~~sp~~~~lla 654 (792)
||.. +..+..+. .+...+.+|++.+++. ++++...++.|++||.. ++.+..+. .....+++++++..+++
T Consensus 105 ~d~~--g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 105 YNQY--GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp ECTT--SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred ECCC--CcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 9943 45555553 3446789999999975 66677778999999965 55555553 23567999998775555
Q ss_pred EEcCCeEEEEECCCCeEEEEecCC--CCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCC--CceEE
Q 003840 655 AAAENVVSILDAETQACRLSLQGH--TKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNG--NKFHS 728 (792)
Q Consensus 655 ~s~dg~I~i~D~~t~~~~~~l~~h--~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~--~~i~s 728 (792)
...++.|++||.. ++.+..+..+ ...+..|+++++|+++++...+ .|.+||.. + ..+..+..+. ..+..
T Consensus 181 ~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 181 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFD 255 (286)
T ss_dssp EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEE
T ss_pred ECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C---CEEEEEcccCCCCccee
Confidence 5668999999974 4555566443 3578999999999988887654 89999953 3 3444444433 34789
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003840 729 CVFHPTYPSLLVIGCYQSLELWNMSEN 755 (792)
Q Consensus 729 i~fspdg~~L~sgs~dg~I~IwDl~~~ 755 (792)
++++|++..+++ +.++.|++|++...
T Consensus 256 i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 256 VALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 999999975555 67899999998654
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=3.6e-15 Score=161.27 Aligned_cols=232 Identities=11% Similarity=0.075 Sum_probs=171.2
Q ss_pred CCCEEEEEECCCCCeEEEEeCC------------------------CcEEEEeCCCCCceeEEec-ccCCCeEEEEEcCC
Q 003840 554 SSLITDVRFSPSMPRLATSSFD------------------------KTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPN 608 (792)
Q Consensus 554 ~~~V~~i~fspdg~~Lasgs~D------------------------g~V~IWdl~s~~~~i~~~~-~h~~~V~sl~fspd 608 (792)
-+.|.+|+++++|+++++...+ +.|.+||..+ +..+..+. ++......|+|+++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN-AEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-CCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-CeEEeccCCCccCCceEEEECCC
Confidence 4679999999999988888777 4799999987 44554443 44567899999999
Q ss_pred CCeEEEEEeCCCcEEEEEcCCCe-eEEEee------------CCeeEEEEec-CCCEEEEEE-cCCeEEEEECCCCeEEE
Q 003840 609 KDDLICSCDGDGEIRYWSINNGS-CTRVFK------------GGTAQMRFQP-HLGRYLAAA-AENVVSILDAETQACRL 673 (792)
Q Consensus 609 ~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~------------~~~~~v~~sp-~~~~lla~s-~dg~I~i~D~~t~~~~~ 673 (792)
+. ++++...++.|++||..... .+..+. .....+++++ ++..+++.+ .++.|++|| .+++.+.
T Consensus 102 g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 102 GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 87 67688888999999986542 444442 1356799999 444445544 589999999 5666666
Q ss_pred EecCC----------CCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCCCCcceEEEee--cCCCceEEEEEeCCCCEEE
Q 003840 674 SLQGH----------TKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLL 739 (792)
Q Consensus 674 ~l~~h----------~~~V~sv~~spd-g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~--~~~~~i~si~fspdg~~L~ 739 (792)
.+... -.....|+++++ +.++++...+ .|++||..++ +.+..+. .+...+..++|+| +..++
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-CEEEE
Confidence 66422 234889999998 6666666666 9999999765 4555553 3456788999999 33222
Q ss_pred EE-------EcCCeEEEEECCCCcEEEE----cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 740 VI-------GCYQSLELWNMSENKTMTL----TAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 740 sg-------s~dg~I~IwDl~~~~~~~~----~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+. ..+..|++||+.+++.+.. ..+...+.+|+|+++|.++++...++.|++|+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 22 2234899999999998854 35777899999999998888888899999985
No 179
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.70 E-value=1.5e-13 Score=144.41 Aligned_cols=272 Identities=9% Similarity=-0.013 Sum_probs=191.7
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE-eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~-l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
+..+...+.+++++++|+++++...++.|.+||.. ++.... +..+...+.+|++.+++.++++...++.|..||...
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g- 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG- 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-
Confidence 34556789999999999987776668899999988 554332 233567899999999998888777788899999863
Q ss_pred CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-e---CCeeEEEEecCCCEEEEEEcCCeEE
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-K---GGTAQMRFQPHLGRYLAAAAENVVS 662 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~---~~~~~v~~sp~~~~lla~s~dg~I~ 662 (792)
......+......+.+|++.+++. ++++...++.|.+||. +++..... . .....+++.+++..+++...++.|.
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 221222223456789999999875 5556666889999998 55544322 1 2456788888876555555578999
Q ss_pred EEECCCCeEEEE-ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003840 663 ILDAETQACRLS-LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 740 (792)
Q Consensus 663 i~D~~t~~~~~~-l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s 740 (792)
+||. +++.... +......+.+++++++|+++++...+ .|.+||. ++.. . ..........+..+++++++..+++
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~-~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-T-EFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-E-EEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-E-EEECCCCCCCceeEEECCCCCEEEe
Confidence 9999 6655432 33445668899999999977766555 8999998 5421 1 1223334567899999999985555
Q ss_pred EEcCCeEEEEECCCCcEEEE--cccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003840 741 IGCYQSLELWNMSENKTMTL--TAHEGLIAALAVSTETGYVASASHDKFVK 789 (792)
Q Consensus 741 gs~dg~I~IwDl~~~~~~~~--~~h~~~V~sl~fspdg~~LaSgs~DG~I~ 789 (792)
...++.|.+||. ++....+ ..+...+.++++ +++.++++...++.++
T Consensus 242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGK 290 (299)
T ss_dssp ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence 446789999998 4554433 345577999999 8888777655444433
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=5.6e-15 Score=159.68 Aligned_cols=234 Identities=17% Similarity=0.193 Sum_probs=163.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCC---C--eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC------------
Q 003840 513 SKVICCHFSSDGKLLATGGHD---K--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------------ 575 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~D---g--~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D------------ 575 (792)
..+.+++|||||++||.++.+ + .|++||+.+++.......+ . +.+++|+||++.|++++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 458899999999999988754 3 3888899887766554443 3 9999999999998888643
Q ss_pred ---------------CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC-------cEEEEEcCCCeeE
Q 003840 576 ---------------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-------EIRYWSINNGSCT 633 (792)
Q Consensus 576 ---------------g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg-------~I~iwdl~~~~~~ 633 (792)
..|++||+.+ +..+..+.. . .+..++|+|++ +++++..++ ...+|.+.+++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~-~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTES-EEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEE 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTT-TEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEE
T ss_pred cceeecCcccccCccceEEEEECCC-CeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceE
Confidence 5689999986 444244444 3 78899999998 555665442 3444444455554
Q ss_pred EEeeCCeeEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEecCCCCCeEE-EEEcCCCCEEEEEeCC-eEE
Q 003840 634 RVFKGGTAQMRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGHTKPIDS-VCWDPSGELLASVSED-SVR 703 (792)
Q Consensus 634 ~~~~~~~~~v~~sp~~~~lla~s~d--------g~I~i~D~~t~~~~~~l~~h~~~V~s-v~~spdg~~Las~s~d-~I~ 703 (792)
..... .....++|++.++++++.+ ..|.+|| +++....+..+...+.. +.|+ ++ ++++++.+ .++
T Consensus 212 ~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 212 KMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp EEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred EeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEE
Confidence 43333 3334459999998887754 3788888 56655555566777886 9999 88 88888877 899
Q ss_pred EEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE-EEEECCCCcEEEEcccCCC
Q 003840 704 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL-ELWNMSENKTMTLTAHEGL 766 (792)
Q Consensus 704 IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I-~IwDl~~~~~~~~~~h~~~ 766 (792)
|| +.++ .. ..+..+...+.+++|++ ..+++++.++.. .||.+. ++...+..|...
T Consensus 287 l~-~~~g---~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~lt~~n~~ 342 (347)
T 2gop_A 287 LY-IWDG---EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEKQLTDYNDP 342 (347)
T ss_dssp EE-EESS---SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEEECCCTTST
T ss_pred EE-EcCC---ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEEEeccccHh
Confidence 99 8743 33 33334467889999999 677777777654 666665 665566655543
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.68 E-value=5.1e-15 Score=177.21 Aligned_cols=243 Identities=8% Similarity=0.019 Sum_probs=175.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCc-------
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDK-----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT------- 577 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg-----~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~------- 577 (792)
+|...+..++|||||++||.+..++ .|++||+.+++.+.....+ ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3445688999999999999876543 8999999999877643322 23678999999999999988776
Q ss_pred ---------EEEEeCCCCCce-eEEec--ccCCCeEEEEEcCCCCeEEEEEeC----CCcEEEEEcCC------Ce-eEE
Q 003840 578 ---------VRVWDADNPGYS-LRTFM--GHSASVMSLDFHPNKDDLICSCDG----DGEIRYWSINN------GS-CTR 634 (792)
Q Consensus 578 ---------V~IWdl~s~~~~-i~~~~--~h~~~V~sl~fspd~~~ll~sgs~----Dg~I~iwdl~~------~~-~~~ 634 (792)
|++|++.++... ...+. .+...+..+.|+||++.++++... +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999874322 22223 355668899999999988766642 57899999986 42 233
Q ss_pred EeeC--CeeEEEEecCCCEEEEEEcC----CeEEEEECCCCe--EEEEecCCCC--CeEEEEEcCCCCEEEEEeCC---e
Q 003840 635 VFKG--GTAQMRFQPHLGRYLAAAAE----NVVSILDAETQA--CRLSLQGHTK--PIDSVCWDPSGELLASVSED---S 701 (792)
Q Consensus 635 ~~~~--~~~~v~~sp~~~~lla~s~d----g~I~i~D~~t~~--~~~~l~~h~~--~V~sv~~spdg~~Las~s~d---~ 701 (792)
.+.. ......|+++++.+++.+.. +.|.+||+.++. ....+..|.. .+..++|++++.++++...+ .
T Consensus 281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT 360 (710)
T ss_dssp EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence 3322 12234588999988887763 369999998764 1233444433 68889999777777777766 5
Q ss_pred EEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCc
Q 003840 702 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENK 756 (792)
Q Consensus 702 I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d----g~I~IwDl~~~~ 756 (792)
|++||+.++ ..+..+..+...+..++++|+++.|+....+ +.|++||+.+++
T Consensus 361 l~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 361 LQLHDLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCCC---CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 777887655 4556666667778889999999877655433 589999998877
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.67 E-value=2.6e-14 Score=154.63 Aligned_cols=249 Identities=10% Similarity=0.004 Sum_probs=184.6
Q ss_pred CCCeEEEEECCCCceeEEec------cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEE
Q 003840 532 HDKKAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 605 (792)
Q Consensus 532 ~Dg~I~vWdl~t~~~~~~l~------~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~f 605 (792)
.++.|.+||.++++....+. .......++.+. +++++++...++.|.+||..+ .+.+..+. .......|++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t-~~~~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINT-FKEVGRIT-GFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTT-CCEEEEEE-CCSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcc-cEEEEEcC-CCCCCcEEEE
Confidence 37899999999998776542 122446778874 444566666689999999998 56666664 4567889999
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--------CeeEEEEecCCCEEEEEE--cCCeEEEEECCCCeEEEEe
Q 003840 606 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPHLGRYLAAA--AENVVSILDAETQACRLSL 675 (792)
Q Consensus 606 spd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------~~~~v~~sp~~~~lla~s--~dg~I~i~D~~t~~~~~~l 675 (792)
++++ .++++...++.|.+||+.+++....+.. ....+++ ++++++++. .++.|.+||.++++.+..+
T Consensus 92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 8887 5665665799999999999998876653 3345666 567777776 3889999999999988877
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeC-----------CeEEEEECCCCCCcceEEEeecC-CCceEEEEEeCCCCEEEEEEc
Q 003840 676 QGHTKPIDSVCWDPSGELLASVSE-----------DSVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGC 743 (792)
Q Consensus 676 ~~h~~~V~sv~~spdg~~Las~s~-----------d~I~IwDl~s~~~~~~i~~~~~~-~~~i~si~fspdg~~L~sgs~ 743 (792)
... .....++++++|++++++.. +.|.+||..++ +....+... ......++|+|++++|+++..
T Consensus 169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 643 34578899999997777654 37999999776 444444432 346899999999999988765
Q ss_pred CCeEEEEECCCCcEEE--Ec-ccCCCeEEEEEeC-CCCEEEEE----eCCCcEEEeC
Q 003840 744 YQSLELWNMSENKTMT--LT-AHEGLIAALAVST-ETGYVASA----SHDKFVKLWK 792 (792)
Q Consensus 744 dg~I~IwDl~~~~~~~--~~-~h~~~V~sl~fsp-dg~~LaSg----s~DG~I~IWd 792 (792)
.|++||..+++... +. .......+++++| ++.++++. ..++.|.+||
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 89999999887641 11 1246789999999 55555555 5688999986
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.67 E-value=1e-13 Score=149.11 Aligned_cols=235 Identities=12% Similarity=0.102 Sum_probs=169.1
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC----CcEE
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD----KTVR 579 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D----g~V~ 579 (792)
.+..+..+...+.+++|+++|++++++..++.|++||.++++....+..+...+.+++|+++++++++...+ +.|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 455667777889999999999988888889999999999887766554567889999999999888877666 6899
Q ss_pred EEeCCCCCceeEEec--ccCCCeEEEEEcCCCCeEEEEEeC------CCcEEEEEcCCCeeEEEee--CCeeEEEEecCC
Q 003840 580 VWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFK--GGTAQMRFQPHL 649 (792)
Q Consensus 580 IWdl~s~~~~i~~~~--~h~~~V~sl~fspd~~~ll~sgs~------Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~ 649 (792)
+||.++. .....+. .+...+.++++++++. ++++... .+.|..||..+++...... .....++|++++
T Consensus 116 ~~d~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg 193 (333)
T 2dg1_A 116 AATENGD-NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE 193 (333)
T ss_dssp EECTTSC-SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS
T ss_pred EEeCCCC-EEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCC
Confidence 9999863 3322222 2446799999999986 4444442 3566777766555443322 346778999999
Q ss_pred CEEEEEE-cCCeEEEEECCC-CeEEE--------EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE
Q 003840 650 GRYLAAA-AENVVSILDAET-QACRL--------SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE 718 (792)
Q Consensus 650 ~~lla~s-~dg~I~i~D~~t-~~~~~--------~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~ 718 (792)
+.++++. .++.|.+||.++ +..+. .+.++ ..+..++++++|+++++...+ .|.+||.. + ..+..
T Consensus 194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~ 268 (333)
T 2dg1_A 194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQ 268 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEE
T ss_pred CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEE
Confidence 8776655 478999999964 32111 12222 467889999999988877766 89999984 3 34444
Q ss_pred eecCCC------ceEEEEEeCCCCEEEEEEcCC
Q 003840 719 LSCNGN------KFHSCVFHPTYPSLLVIGCYQ 745 (792)
Q Consensus 719 ~~~~~~------~i~si~fspdg~~L~sgs~dg 745 (792)
+..... .+.+++|+++++.|++++.++
T Consensus 269 ~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 269 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 443332 588999999988888777663
No 184
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=2.7e-15 Score=177.43 Aligned_cols=239 Identities=10% Similarity=0.047 Sum_probs=162.8
Q ss_pred EEEEc--CCCCE-EEEEeC-CCeEEEEECC--CCceeEEecc-----CCCCEEEEEECCCCCeEEEEeCC----------
Q 003840 517 CCHFS--SDGKL-LATGGH-DKKAVLWHTD--TLKSKTNLEE-----HSSLITDVRFSPSMPRLATSSFD---------- 575 (792)
Q Consensus 517 ~lafs--pdg~~-Lasgs~-Dg~I~vWdl~--t~~~~~~l~~-----h~~~V~~i~fspdg~~Lasgs~D---------- 575 (792)
.++|+ |||++ |+.++. +..|++|++. .......+.. |...+.+++|+|||+.|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 45555 99998 776654 5667777765 2034555555 67789999999999999999877
Q ss_pred CcEEEEeCCCCC----ceeEEec-ccCCCeEEEEEcCCCCeEEEEEeCC-------CcEEEEEcC-CC---eeEEEee--
Q 003840 576 KTVRVWDADNPG----YSLRTFM-GHSASVMSLDFHPNKDDLICSCDGD-------GEIRYWSIN-NG---SCTRVFK-- 637 (792)
Q Consensus 576 g~V~IWdl~s~~----~~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~D-------g~I~iwdl~-~~---~~~~~~~-- 637 (792)
..|++||+.+.. .....+. .+...+..++|+|||+.+++++... ..|++||+. ++ +......
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 579999998621 3445666 6667888999999998777555432 479999999 56 4444332
Q ss_pred -CCeeEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEecCCCCC--------eEEEEEcCCCCEEEEEeCCeEEEE-
Q 003840 638 -GGTAQMRFQPHLGRYLAAAAEN--VVSILDAETQACRLSLQGHTKP--------IDSVCWDPSGELLASVSEDSVRVW- 705 (792)
Q Consensus 638 -~~~~~v~~sp~~~~lla~s~dg--~I~i~D~~t~~~~~~l~~h~~~--------V~sv~~spdg~~Las~s~d~I~Iw- 705 (792)
..+..+.|+|++..++++..++ .|++||+.+++.......+... +.+++|+++++++++++.+.++||
T Consensus 241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (662)
T 3azo_A 241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGI 320 (662)
T ss_dssp TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEE
T ss_pred CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEE
Confidence 4567789999999666666677 7777887777665444333222 567899999998888776656666
Q ss_pred -ECCCCCCcceEEEeecCCCceEEEEEeCCCCEEE--EEEcCC--eEEEEECCCCcEEEE
Q 003840 706 -TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL--VIGCYQ--SLELWNMSENKTMTL 760 (792)
Q Consensus 706 -Dl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~--sgs~dg--~I~IwDl~~~~~~~~ 760 (792)
|+.++ .+..+..+...+..+ ++++++.++ +++.+. .|++||+.+++...+
T Consensus 321 ~d~~~~----~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 321 LDPESG----ELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp EETTTT----EEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred EECCCC----cEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 65443 356666666667666 144454433 334333 677778888876654
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.66 E-value=4.1e-14 Score=149.94 Aligned_cols=238 Identities=11% Similarity=0.092 Sum_probs=171.6
Q ss_pred CceeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003840 544 LKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 622 (792)
Q Consensus 544 ~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I 622 (792)
+..+..+..+.....+++|+++++ +++++..++.|.+||..+. ...+..+...+.+++|++++. ++++...++.|
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i 92 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRL 92 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCC-EEEEETTTTEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCc-EEEEecCCCeE
Confidence 344555666677789999999998 7888888999999999863 566666778899999999976 55566667899
Q ss_pred EEEEcCCCeeEEEee-------CCeeEEEEecCCCEEEEE----E-------------cCCeEEEEECCCCeEEEEecCC
Q 003840 623 RYWSINNGSCTRVFK-------GGTAQMRFQPHLGRYLAA----A-------------AENVVSILDAETQACRLSLQGH 678 (792)
Q Consensus 623 ~iwdl~~~~~~~~~~-------~~~~~v~~sp~~~~lla~----s-------------~dg~I~i~D~~t~~~~~~l~~h 678 (792)
.+||..+++...... .....+++++++..+++. + ..+.|..||.. ++.. .+..+
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~ 170 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRD 170 (296)
T ss_dssp EEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECC
T ss_pred EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecC
Confidence 999998887654332 124568999998766652 2 13467777766 4433 34456
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc-ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003840 679 TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG-ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 679 ~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~-~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~ 756 (792)
......++|+|++++|++.+.+ .|++||+...... .....+......+..++++++|+++++. ++.|.+||.....
T Consensus 171 ~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~ 248 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDE 248 (296)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCE
T ss_pred CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCE
Confidence 6678899999999988666666 9999999722111 1122223344556789999999855554 7899999997444
Q ss_pred EEEEcccCCCeEEEEE-eCCCCEEEEEeCCCcEEE
Q 003840 757 TMTLTAHEGLIAALAV-STETGYVASASHDKFVKL 790 (792)
Q Consensus 757 ~~~~~~h~~~V~sl~f-spdg~~LaSgs~DG~I~I 790 (792)
...+..+.. +++++| .++++.|++++.++.+++
T Consensus 249 ~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 249 LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 445666666 999999 589999998888765543
No 186
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.65 E-value=3.4e-13 Score=148.75 Aligned_cols=266 Identities=9% Similarity=0.025 Sum_probs=183.9
Q ss_pred EcCCCCEEEEEeC--CC---eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe----------CCCcEEEEeCC
Q 003840 520 FSSDGKLLATGGH--DK---KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDAD 584 (792)
Q Consensus 520 fspdg~~Lasgs~--Dg---~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----------~Dg~V~IWdl~ 584 (792)
..++++++++... .. .|.+||..+++.+.++...... .++|+||+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467777776653 22 8899999999998888765444 999999999998886 36789999998
Q ss_pred CCCceeEEeccc-------CCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeEEE-eeCCeeEEEEecCCC-EEEE
Q 003840 585 NPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRV-FKGGTAQMRFQPHLG-RYLA 654 (792)
Q Consensus 585 s~~~~i~~~~~h-------~~~V~sl~fspd~~~ll~sgs~-Dg~I~iwdl~~~~~~~~-~~~~~~~v~~sp~~~-~lla 654 (792)
+ .+.+..+... ......+.|+||+++++++... ++.|.++| .+++.+.. +..+. ++.+.+.++ .+++
T Consensus 106 t-~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-~~~~~~~~~~~~~~ 182 (373)
T 2mad_H 106 T-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-CYHIHPGAPSTFYL 182 (373)
T ss_pred C-CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-eEEEEeCCCceEEE
Confidence 6 4445444321 1234589999999988866544 68899999 99998877 65433 355556654 4566
Q ss_pred EEcCCeEEEEECCCCeEEEEec-----CCCCCe-EEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec------
Q 003840 655 AAAENVVSILDAETQACRLSLQ-----GHTKPI-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC------ 721 (792)
Q Consensus 655 ~s~dg~I~i~D~~t~~~~~~l~-----~h~~~V-~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~------ 721 (792)
.+.||.+.++|. +++.+.... ....++ ....|.+++..++..+.+ .+.++|+..... ..+..+..
T Consensus 183 ~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~~~ 260 (373)
T 2mad_H 183 LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGGRK 260 (373)
T ss_pred EcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCccc
Confidence 677999999999 877663322 111221 234566665544333344 899999865421 22222211
Q ss_pred ----CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-CC
Q 003840 722 ----NGNKFHSCVFHPTYPSLLVIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HD 785 (792)
Q Consensus 722 ----~~~~i~si~fspdg~~L~sgs~----------dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~-~LaSgs-~D 785 (792)
.......++++++++.++++.. .+.|.++|+.+++.+..........+++|++||+ +|+++. .+
T Consensus 261 ~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~ 340 (373)
T 2mad_H 261 ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGT 340 (373)
T ss_pred ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCC
Confidence 1122445789999998888764 3579999999999874444555789999999999 777777 48
Q ss_pred CcEEEeC
Q 003840 786 KFVKLWK 792 (792)
Q Consensus 786 G~I~IWd 792 (792)
+.|.+||
T Consensus 341 ~~V~ViD 347 (373)
T 2mad_H 341 EVLHIYD 347 (373)
T ss_pred CeEEEEE
Confidence 9999986
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=2.6e-13 Score=157.50 Aligned_cols=263 Identities=12% Similarity=0.052 Sum_probs=190.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC--CCCceeEEecccCCC
Q 003840 522 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD--NPGYSLRTFMGHSAS 599 (792)
Q Consensus 522 pdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~--s~~~~i~~~~~h~~~ 599 (792)
+.+.++++...++.|.+||..+++.+.++... ..+..+.|+||+++|++++.|+.|.+||+. + ...+..+... ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t-~~~v~~i~~G-~~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE-PTTVAEIKIG-SE 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSS-CCEEEEEECC-SE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCC-CcEeEEEecC-CC
Confidence 44456677778999999999999999888743 357799999999999999999999999995 4 4556666543 34
Q ss_pred eEEEEEc----CCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--------------CeeEEEEecCCCEEEEEEc-CCe
Q 003840 600 VMSLDFH----PNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------------GTAQMRFQPHLGRYLAAAA-ENV 660 (792)
Q Consensus 600 V~sl~fs----pd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------------~~~~v~~sp~~~~lla~s~-dg~ 660 (792)
...++|+ |+|++++++...++.|.+||..+.+.+..+.. .+..+.+++++..+++... +|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 6799999 69999988888899999999999998877642 2345667777666655544 689
Q ss_pred EEEEECCCCeEE--EEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeec-----CCCceEEEEE
Q 003840 661 VSILDAETQACR--LSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC-----NGNKFHSCVF 731 (792)
Q Consensus 661 I~i~D~~t~~~~--~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~-----~~~~i~si~f 731 (792)
|.++|..+.+.+ ..+ .......++.|+|+|++|+++..+ .|.+||+.++ +.+..+.. |.+.-.. .+
T Consensus 322 v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~-~~ 396 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGAN-FV 396 (567)
T ss_dssp EEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEE-EE
T ss_pred EEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCcccee-eE
Confidence 999999876432 222 234567789999999998877643 9999999876 44444433 2211112 26
Q ss_pred eCCCCEEEEEE--cCCeEEEEECCC-------CcEE-EEcccCCCeEEEEEeCCCCEEEEEeC-------CCcEEEeC
Q 003840 732 HPTYPSLLVIG--CYQSLELWNMSE-------NKTM-TLTAHEGLIAALAVSTETGYVASASH-------DKFVKLWK 792 (792)
Q Consensus 732 spdg~~L~sgs--~dg~I~IwDl~~-------~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~-------DG~I~IWd 792 (792)
+|++..+++.+ .++.|.++|..+ .+.+ .+......-..+.++|++++|.+... ...|.|||
T Consensus 397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 88866665554 357999999987 4455 34433333345778999999888663 34788775
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.65 E-value=7.3e-14 Score=147.95 Aligned_cols=240 Identities=11% Similarity=0.031 Sum_probs=174.0
Q ss_pred eeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003840 506 NSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~ 584 (792)
..+..+.....+++|+++|+ +++++..++.|.+||..++ ...+..+...+.+++|+++++++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 34455667789999999998 7888888999999999887 66677778889999999999988877777899999997
Q ss_pred CCCceeEEecc----cCCCeEEEEEcCCCCeEEEEE----e-------------CCCcEEEEEcCCCeeEEEee--CCee
Q 003840 585 NPGYSLRTFMG----HSASVMSLDFHPNKDDLICSC----D-------------GDGEIRYWSINNGSCTRVFK--GGTA 641 (792)
Q Consensus 585 s~~~~i~~~~~----h~~~V~sl~fspd~~~ll~sg----s-------------~Dg~I~iwdl~~~~~~~~~~--~~~~ 641 (792)
+ +........ ....+.++++.++|. ++++. . ..+.|..|+.. ++...... ....
T Consensus 99 ~-g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~ 175 (296)
T 3e5z_A 99 G-GEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPN 175 (296)
T ss_dssp T-CCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEE
T ss_pred C-CcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCc
Confidence 6 333222221 123567899999986 55452 2 13456666655 44333322 2356
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECC-CCeE---EEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEE
Q 003840 642 QMRFQPHLGRYLAAAAENVVSILDAE-TQAC---RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH 717 (792)
Q Consensus 642 ~v~~sp~~~~lla~s~dg~I~i~D~~-t~~~---~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~ 717 (792)
.++|+|+++.+++...++.|.+||+. +++. ...+..+...+.+++++++|+++++. .+.|.+||.. + +.+.
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g---~~~~ 250 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G---DELG 250 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S---CEEE
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C---CEEE
Confidence 79999999988555667899999987 4544 33333355567889999999977776 5599999985 3 5566
Q ss_pred EeecCCCceEEEEE-eCCCCEEEEEEcCCeEEEEECCCCcE
Q 003840 718 ELSCNGNKFHSCVF-HPTYPSLLVIGCYQSLELWNMSENKT 757 (792)
Q Consensus 718 ~~~~~~~~i~si~f-spdg~~L~sgs~dg~I~IwDl~~~~~ 757 (792)
.+..+.. +.+++| .++++.|++++.+ .|..++..+.++
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 6666666 889999 5899989888875 566677766654
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.65 E-value=3.5e-14 Score=155.87 Aligned_cols=271 Identities=8% Similarity=0.058 Sum_probs=192.4
Q ss_pred EEEcCCCCEEEEEeC-----CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe----------CCCcEEEEe
Q 003840 518 CHFSSDGKLLATGGH-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWD 582 (792)
Q Consensus 518 lafspdg~~Lasgs~-----Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----------~Dg~V~IWd 582 (792)
....|+++.+++... ++.|.++|..+++.+.++.....+ . ++++||+++|++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 345689988888865 679999999999999999865555 4 99999999888876 367899999
Q ss_pred CCCCCceeEEeccc-------CCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEE
Q 003840 583 ADNPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLA 654 (792)
Q Consensus 583 l~s~~~~i~~~~~h-------~~~V~sl~fspd~~~ll~sgs~-Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla 654 (792)
..+ ...+..+.-. ......+.|+|||++++++... ++.|.++|+.+++.+..+..+.....+......+++
T Consensus 116 ~~t-~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 116 PVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM 194 (386)
T ss_dssp TTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred CCC-CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEE
Confidence 998 5556655322 1245579999999988766543 789999999999999988654433344444567788
Q ss_pred EEcCCeEEEEECCC-CeEEEEecCC----CCCeE-EEEEc-CCCCEEEEEeCCeEEEEECCCCCCcceEEEee---c---
Q 003840 655 AAAENVVSILDAET-QACRLSLQGH----TKPID-SVCWD-PSGELLASVSEDSVRVWTVGSGSEGECVHELS---C--- 721 (792)
Q Consensus 655 ~s~dg~I~i~D~~t-~~~~~~l~~h----~~~V~-sv~~s-pdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~---~--- 721 (792)
.+.||.+.++++.+ ++.......+ ..++. ...|. ++|++++....+.|+++|+.+... ..+..+. .
T Consensus 195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~~~ 273 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEAER 273 (386)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHHHH
T ss_pred ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeecceeccccccc
Confidence 89999999999976 5543322111 12222 24664 677766655544999999975421 2222221 0
Q ss_pred ----CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-CC
Q 003840 722 ----NGNKFHSCVFHPTYPSLLVIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HD 785 (792)
Q Consensus 722 ----~~~~i~si~fspdg~~L~sgs~----------dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~-~LaSgs-~D 785 (792)
....+..++++++++.+++... .+.|.++|+.+++.+....-...++.|+|++|++ +|+++. .+
T Consensus 274 ~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~ 353 (386)
T 3sjl_D 274 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD 353 (386)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTT
T ss_pred cccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCC
Confidence 0122335778999999888754 2479999999999885444445788999999997 666654 48
Q ss_pred CcEEEeC
Q 003840 786 KFVKLWK 792 (792)
Q Consensus 786 G~I~IWd 792 (792)
+.|.++|
T Consensus 354 ~~VsViD 360 (386)
T 3sjl_D 354 KTLYIHD 360 (386)
T ss_dssp TEEEEEE
T ss_pred CeEEEEE
Confidence 9999886
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.63 E-value=1.7e-12 Score=136.34 Aligned_cols=272 Identities=9% Similarity=0.005 Sum_probs=190.4
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE-EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003840 509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 587 (792)
Q Consensus 509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~-~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~ 587 (792)
......+.+++++++|+++++...++.|.+||.. ++... .+..+...+.+|++.+++.++++...++.|.+||.. +.
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 3455689999999999988877778999999988 55443 233344679999999999877777778889999987 23
Q ss_pred ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE-ee---CCeeEEEEecCCCEEEEEEcCCeEEE
Q 003840 588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FK---GGTAQMRFQPHLGRYLAAAAENVVSI 663 (792)
Q Consensus 588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~-~~---~~~~~v~~sp~~~~lla~s~dg~I~i 663 (792)
.....+......+.++++.+++. ++++...++.|..||.. ++.... +. .....+++.+++..+++...++.|.+
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred eEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 32222233446789999998875 55566667899999987 554432 22 24567888888875554445789999
Q ss_pred EECCCCeEEE-EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003840 664 LDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 741 (792)
Q Consensus 664 ~D~~t~~~~~-~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sg 741 (792)
||. +++... .+..+...+.+++++++|+++++...+ .|.+||. ++. .....+......+.++++.+++..+++.
T Consensus 172 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 172 ITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE--ISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred ECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc--EEEEECCCCCCCceEEEECCCCCEEEec
Confidence 998 554433 233345678999999999877776655 8999998 331 1112233345668899999999855555
Q ss_pred EcCCeEEEEECCCCcEEEE--cccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 742 GCYQSLELWNMSENKTMTL--TAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 742 s~dg~I~IwDl~~~~~~~~--~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
..++.|.+||. ++....+ ......+.+++++++|.++++.. . .|..+
T Consensus 248 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 248 WGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp TTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred cCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 45689999998 4554433 33456789999999998766554 4 55554
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.62 E-value=7.1e-14 Score=145.27 Aligned_cols=236 Identities=10% Similarity=-0.003 Sum_probs=167.1
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003840 514 KVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 592 (792)
Q Consensus 514 ~V~~lafspdg~~La-sgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~ 592 (792)
...+++++++|++++ +...++.|.+||..+.........+...+.+|++.++++++++.. ++.|.+||.... ....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~--~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN--NQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS--CCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc--eEee
Confidence 588999999999777 446789999999876554332233445788999999998666555 889999998752 2333
Q ss_pred ec-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003840 593 FM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAET 668 (792)
Q Consensus 593 ~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t 668 (792)
+. .....+.+|++.+++. ++++...++.|.+|+..+........ .....+++.+++..+++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 32 2336789999999875 66676778899999876554433221 2456789999887555555678999999988
Q ss_pred CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003840 669 QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 747 (792)
Q Consensus 669 ~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I 747 (792)
.........+...+.+|+++++|.++++...+ .|.+||..... .......+...+..+++++++..+++...++.|
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 76555444444678999999999877777666 89999986532 122122233568999999999977777788999
Q ss_pred EEEECCCCc
Q 003840 748 ELWNMSENK 756 (792)
Q Consensus 748 ~IwDl~~~~ 756 (792)
++|++...+
T Consensus 258 ~~~~~~~~~ 266 (270)
T 1rwi_B 258 VKLTSLEHH 266 (270)
T ss_dssp EEECCCGGG
T ss_pred EEEcCCCcc
Confidence 999987654
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.62 E-value=1.5e-13 Score=148.68 Aligned_cols=251 Identities=9% Similarity=-0.015 Sum_probs=177.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003840 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 593 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~ 593 (792)
.+.++++. +++++++...++.|.+||..+++.+.++. .......|+|+++++++++...++.|.+||+.+ ......+
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-~~~~~~i 121 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT-YEITGYI 121 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT-TEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC-CeEEEEE
Confidence 35667774 34455555667999999999999988885 456789999998885444444899999999987 4555444
Q ss_pred cccC-----CCeEEEEEcCCCCeEEEEEe-CCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEcC-------
Q 003840 594 MGHS-----ASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE------- 658 (792)
Q Consensus 594 ~~h~-----~~V~sl~fspd~~~ll~sgs-~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~d------- 658 (792)
.... .....|++ ++..++++.. .++.|.+||+.+++.+..+.. ....+.++++++.++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYG 199 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccc
Confidence 4322 14556777 4556666654 489999999999998877653 34568889987655554444
Q ss_pred ---CeEEEEECCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 003840 659 ---NVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 734 (792)
Q Consensus 659 ---g~I~i~D~~t~~~~~~l~~h-~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspd 734 (792)
+.|.+||..+++.+..+... ......++|+|++++|+++.. .|.+||..++.... ...+.........++++|+
T Consensus 200 ~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~ 277 (328)
T 3dsm_A 200 YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPN 277 (328)
T ss_dssp BCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTT
T ss_pred cCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceee-eeeecCCCCceEEEEEcCC
Confidence 78999999999887776532 246889999999998888766 89999998764311 1111222456889999996
Q ss_pred CCEEEEEE-----cCCeEEEEECCCCcEEEEcccCCCeEEEEE
Q 003840 735 YPSLLVIG-----CYQSLELWNMSENKTMTLTAHEGLIAALAV 772 (792)
Q Consensus 735 g~~L~sgs-----~dg~I~IwDl~~~~~~~~~~h~~~V~sl~f 772 (792)
+..|+++. .++.|.+||.. ++.+....-......++|
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred CCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 55565554 56799999998 776633333344556665
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.62 E-value=9.5e-15 Score=174.46 Aligned_cols=245 Identities=11% Similarity=0.040 Sum_probs=166.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEE-----eCCCeEEEEECCCCceeEEeccCCCCE--EEEEECCCCCeEEEEeCCCc-----
Q 003840 510 ASTSKVICCHFSSDGKLLATG-----GHDKKAVLWHTDTLKSKTNLEEHSSLI--TDVRFSPSMPRLATSSFDKT----- 577 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasg-----s~Dg~I~vWdl~t~~~~~~l~~h~~~V--~~i~fspdg~~Lasgs~Dg~----- 577 (792)
+|...+.+++|||||++||.+ +.+..|++||+++++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 456678999999999999944 345689999999988651 1121222 68899999999999998876
Q ss_pred --------EEEEeCCCCCc---eeEEecccCCCeEEEEEcCCCCeEEEEEeCC-C--cEEEEEcCCCeeEEEee--CCee
Q 003840 578 --------VRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGD-G--EIRYWSINNGSCTRVFK--GGTA 641 (792)
Q Consensus 578 --------V~IWdl~s~~~---~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D-g--~I~iwdl~~~~~~~~~~--~~~~ 641 (792)
|++|++.++.. .+.....+...+.++.|+|||+.++++...+ + .|++||..++....... ....
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 99999987432 2333334556889999999998887665543 2 67777665555443332 2333
Q ss_pred EEEEecCCCEEEEEEc----CCeEEEEECCCCeE---EEEecCC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC
Q 003840 642 QMRFQPHLGRYLAAAA----ENVVSILDAETQAC---RLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE 712 (792)
Q Consensus 642 ~v~~sp~~~~lla~s~----dg~I~i~D~~t~~~---~~~l~~h-~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~ 712 (792)
...+ ++++ +++.+. ++.|.+||+.++.. ...+..+ ...|..++|+ ++.++++...| ..+||.+...
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~-- 350 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK-- 350 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT--
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC--
Confidence 4444 6666 665554 57899999987652 3333333 4457888888 66777777777 6666654321
Q ss_pred cceEEEeecC-CCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCcEEEEc
Q 003840 713 GECVHELSCN-GNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTLT 761 (792)
Q Consensus 713 ~~~i~~~~~~-~~~i~si~fspdg~~L~sgs~d----g~I~IwDl~~~~~~~~~ 761 (792)
...+..+..+ ...+..++++|+++.|+....+ +.|++||+.+++...+.
T Consensus 351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 1344555444 4567778899999877755433 58999999988765444
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=2.1e-13 Score=163.24 Aligned_cols=266 Identities=8% Similarity=0.004 Sum_probs=180.1
Q ss_pred CCCCEEEEEeCCC-----eEEEEECCCCceeEEec------cCCCCEEEEEECCCCCeEEEEeCCC-----cEEEEeCCC
Q 003840 522 SDGKLLATGGHDK-----KAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSSFDK-----TVRVWDADN 585 (792)
Q Consensus 522 pdg~~Lasgs~Dg-----~I~vWdl~t~~~~~~l~------~h~~~V~~i~fspdg~~Lasgs~Dg-----~V~IWdl~s 585 (792)
|||++++....++ .|++.+...++....+. +|...+..++|+|||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8898887665332 44555554544332222 2445688999999999998776543 899999987
Q ss_pred CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc----------------EEEEEcCCCee--EEEeeC-----CeeE
Q 003840 586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE----------------IRYWSINNGSC--TRVFKG-----GTAQ 642 (792)
Q Consensus 586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~----------------I~iwdl~~~~~--~~~~~~-----~~~~ 642 (792)
+..+.....+ ..+.+++|+||++.++++. .++. |++|++.++.. ...+.. ....
T Consensus 161 -g~~~~~~~~~-~~~~~~~wspDg~~l~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 161 -AKELPDVLER-VKFSCMAWTHDGKGMFYNA-YPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp -TEEEEEEEEE-ECSCCEEECTTSSEEEEEE-CCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred -CCCCcccccC-cccceEEEEeCCCEEEEEE-ECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 4444322222 2367899999998777555 4444 99999988763 222222 2457
Q ss_pred EEEecCCCEEEEEEc-----CCeEEEEECCC------Ce-EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-----eEEEE
Q 003840 643 MRFQPHLGRYLAAAA-----ENVVSILDAET------QA-CRLSLQGHTKPIDSVCWDPSGELLASVSED-----SVRVW 705 (792)
Q Consensus 643 v~~sp~~~~lla~s~-----dg~I~i~D~~t------~~-~~~~l~~h~~~V~sv~~spdg~~Las~s~d-----~I~Iw 705 (792)
+.|+|++++|++++. +..|++||+.+ +. ....+..+...+.. .|+++|+.|+..+.. .|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 899999999988775 56899999986 42 34455556665655 488999977766542 59999
Q ss_pred ECCCCCCcceEEEeecCCC--ceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEE
Q 003840 706 TVGSGSEGECVHELSCNGN--KFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVA 780 (792)
Q Consensus 706 Dl~s~~~~~~i~~~~~~~~--~i~si~fspdg~~L~sgs~dg--~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~La 780 (792)
|+.++... ....+..+.. .+..++|++++.++++...++ .|++||+.+++.+ .+..+.+.|..+++++++..|+
T Consensus 317 d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 317 DFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp ETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred eCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 99775321 2233333433 678899997777777887787 5777888667644 6666778889999999987665
Q ss_pred EE-eC---CCcEEEeC
Q 003840 781 SA-SH---DKFVKLWK 792 (792)
Q Consensus 781 Sg-s~---DG~I~IWd 792 (792)
.. +. .+.|++||
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 33 22 46787775
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=1.7e-13 Score=142.38 Aligned_cols=231 Identities=10% Similarity=-0.024 Sum_probs=162.9
Q ss_pred CEEEEEECCCCCeEE-EEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE
Q 003840 556 LITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 634 (792)
Q Consensus 556 ~V~~i~fspdg~~La-sgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~ 634 (792)
...+|++++++++++ +...++.|.+||..+. ........+...+.+|++.+++. ++++.. ++.|++||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST-GTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCc-ccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEee
Confidence 688999999998777 5477889999998652 22111123335678999999876 554555 8899999987655432
Q ss_pred Ee-e--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003840 635 VF-K--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 710 (792)
Q Consensus 635 ~~-~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~ 710 (792)
.. . .....+++.+++..+++...++.|.+||..+.............+.+++++++|+++++...+ .|.+||....
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 21 1 346678899987755555567899999876655443333333467889999999977776655 9999998754
Q ss_pred CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc-ccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003840 711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-AHEGLIAALAVSTETGYVASASHDKFVK 789 (792)
Q Consensus 711 ~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~-~h~~~V~sl~fspdg~~LaSgs~DG~I~ 789 (792)
............+..++++++|..+++...++.|.+||..+....... .+...+.+++++++|+++++...++.|+
T Consensus 182 ---~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 182 ---NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp ---CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred ---ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence 222222223366889999999966665556789999999776554433 3346789999999999888888899999
Q ss_pred EeC
Q 003840 790 LWK 792 (792)
Q Consensus 790 IWd 792 (792)
+|+
T Consensus 259 ~~~ 261 (270)
T 1rwi_B 259 KLT 261 (270)
T ss_dssp EEC
T ss_pred EEc
Confidence 985
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.59 E-value=5.2e-13 Score=140.95 Aligned_cols=239 Identities=14% Similarity=0.087 Sum_probs=177.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEeccCC-CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEeccc-CCCe
Q 003840 523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASV 600 (792)
Q Consensus 523 dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~-~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h-~~~V 600 (792)
.+++|++++.|+.|.+||.++++.+.++..+. ..+.++.++|+|++|+ +.++.|+.||. + ++.+..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~-G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D-GRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T-SCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C-CCEEEEEcCCCCccc
Confidence 45789999999999999999999999998776 5789999999999888 45778999999 5 6677777764 3578
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---------CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003840 601 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---------GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC 671 (792)
Q Consensus 601 ~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---------~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~ 671 (792)
.++.+.++++.+++.++.++.|..+|. +++.+..+.. ....+++.++++.+++...++.|.+||.+ ++.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 899999998766543333777888875 6777666541 12346788899999888889999999998 999
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC------CceEEEEEeCCCCEEEEEEcC
Q 003840 672 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG------NKFHSCVFHPTYPSLLVIGCY 744 (792)
Q Consensus 672 ~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~------~~i~si~fspdg~~L~sgs~d 744 (792)
+.++... ..+.++.+.++|+++++++.+ .|..||..++ +.+..+.... ..+..++..++|..+++....
T Consensus 158 ~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 158 LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence 9888764 456678889999999988888 8999999877 5555554321 237788889999877776321
Q ss_pred --------CeEEEEEC-CCCcEE-EEccc--CCCeEEEE
Q 003840 745 --------QSLELWNM-SENKTM-TLTAH--EGLIAALA 771 (792)
Q Consensus 745 --------g~I~IwDl-~~~~~~-~~~~h--~~~V~sl~ 771 (792)
+..+++++ .+++++ .+..+ -+.|.+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 234 HDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp TCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred ccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 23456665 355555 33322 23455543
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.59 E-value=4.4e-12 Score=139.85 Aligned_cols=244 Identities=11% Similarity=0.065 Sum_probs=174.2
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeEEeccC-------CCCEEEEEECCCC
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSPSM 566 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs----------~Dg~I~vWdl~t~~~~~~l~~h-------~~~V~~i~fspdg 566 (792)
.+..+.....+ .++|+|||++|+++. .++.|.+||..+++.+.++... ......++|+|||
T Consensus 59 ~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG 136 (373)
T 2mad_H 59 ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN 136 (373)
T ss_pred EEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC
Confidence 44555544444 999999999999886 3678999999999888876532 1335689999999
Q ss_pred CeEEEEeC--CCcEEEEeCCCCCceeEE-ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----C
Q 003840 567 PRLATSSF--DKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----G 638 (792)
Q Consensus 567 ~~Lasgs~--Dg~V~IWdl~s~~~~i~~-~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~ 638 (792)
++|++++. ++.|.++| .+ ++.+.. +.. .. |+.+.++++..+++.+.||.+.+||. +++...... .
T Consensus 137 ~~l~v~n~~~~~~v~viD-~t-~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~ 209 (373)
T 2mad_H 137 ADLLFFQFAAGPAVGLVV-QG-GSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLT 209 (373)
T ss_pred CEEEEEecCCCCeEEEEE-CC-CCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccccc
Confidence 99998874 47899999 76 555555 432 22 35566777777778888999999999 877663322 1
Q ss_pred C----eeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEecC----------CCCCeEEEEEcCCCCEEEEEeC---
Q 003840 639 G----TAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQG----------HTKPIDSVCWDPSGELLASVSE--- 699 (792)
Q Consensus 639 ~----~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~--~~~~l~~----------h~~~V~sv~~spdg~~Las~s~--- 699 (792)
. .....+.++++.++..+.++.|.++|+.... .+..+.. .......++++++++.|++...
T Consensus 210 ~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~ 289 (373)
T 2mad_H 210 AAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS 289 (373)
T ss_pred CCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCC
Confidence 1 1123566777777777788899999997652 2222221 1122445788999887777542
Q ss_pred --------CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEE
Q 003840 700 --------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMTL 760 (792)
Q Consensus 700 --------d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~~ 760 (792)
+.|.++|+.+. +.+..+.. ......++|+||++ .++++. .++.|.+||+.+++.+..
T Consensus 290 ~~~~~~~~~~V~VID~~t~---~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 290 AWKLHAAAKEVTSVTGLVG---QTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cccccCCCCeEEEEECCCC---EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 27999999776 56666643 34688999999999 677776 478999999999998844
No 198
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.57 E-value=5.8e-13 Score=146.16 Aligned_cols=265 Identities=12% Similarity=0.112 Sum_probs=183.7
Q ss_pred cceeeeeeeecCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeEEeccCC-------CCEEEEEE
Q 003840 500 FSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHS-------SLITDVRF 562 (792)
Q Consensus 500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs----------~Dg~I~vWdl~t~~~~~~l~~h~-------~~V~~i~f 562 (792)
.+++.+..+.....+ . ++++|||++|+++. .++.|.+||..+++.+.++.... .....++|
T Consensus 67 ~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~ 144 (386)
T 3sjl_D 67 EAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL 144 (386)
T ss_dssp TTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred CCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEE
Confidence 344566666655555 4 99999999888775 36789999999999988875321 24567999
Q ss_pred CCCCCeEEEEeC--CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEEeeC-
Q 003840 563 SPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFKG- 638 (792)
Q Consensus 563 spdg~~Lasgs~--Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~~~~- 638 (792)
+|||++|+++.. ++.|.|+|+.+ .+.+.++... + |..+.|.+...+++.+.||.+.++++.. ++.......
T Consensus 145 spDGk~lyVan~~~~~~VsVID~~t-~~vv~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~ 219 (386)
T 3sjl_D 145 TPDGKTLLFYQFSPAPAVGVVDLEG-KAFKRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 219 (386)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred cCCCCEEEEEEcCCCCeEEEEECCC-CcEEEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce
Confidence 999999988874 68999999998 6666666422 1 1223355555566777899999999976 554321111
Q ss_pred ------Ce-eEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEec---------C-CCCCeEEEEEcCCCCEEEEEeC
Q 003840 639 ------GT-AQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQ---------G-HTKPIDSVCWDPSGELLASVSE 699 (792)
Q Consensus 639 ------~~-~~v~~sp~~~~lla~s~dg~I~i~D~~t~~--~~~~l~---------~-h~~~V~sv~~spdg~~Las~s~ 699 (792)
.+ ....|....+.++..+.+|.|+++|+.+.. .+..+. + ....+..++++++++.++....
T Consensus 220 ~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~ 299 (386)
T 3sjl_D 220 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 299 (386)
T ss_dssp CSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred eccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEec
Confidence 11 113555445566667779999999997664 332221 0 1223445788999987777542
Q ss_pred ----------C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEEc-CCeEEEEECCCCcEEEEcccCCC
Q 003840 700 ----------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGC-YQSLELWNMSENKTMTLTAHEGL 766 (792)
Q Consensus 700 ----------d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-~L~sgs~-dg~I~IwDl~~~~~~~~~~h~~~ 766 (792)
. .|.++|+.+. +.+..+... ..++.|+|++|++ +|+++.. ++.|.++|..+++.+......+.
T Consensus 300 ~~~~~~hk~~~~~V~viD~~t~---kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~ 375 (386)
T 3sjl_D 300 QRDEWRHKTASRFVVVLDAKTG---ERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH 375 (386)
T ss_dssp ECCTTCTTSCEEEEEEEETTTC---CEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred cccccccCCCCCEEEEEECCCC---eEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC
Confidence 2 7999999887 555555432 3678999999997 6777654 78999999999998865555555
Q ss_pred eEEEEEeCC
Q 003840 767 IAALAVSTE 775 (792)
Q Consensus 767 V~sl~fspd 775 (792)
-+.|.+++|
T Consensus 376 p~~l~~s~d 384 (386)
T 3sjl_D 376 GPQVITTAD 384 (386)
T ss_dssp SCCEEEECC
T ss_pred CceeEECCc
Confidence 666777776
No 199
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.56 E-value=5.1e-13 Score=148.97 Aligned_cols=266 Identities=7% Similarity=0.043 Sum_probs=187.4
Q ss_pred CCCCEEEEEeCC-----CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe----------CCCcEEEEeCCCC
Q 003840 522 SDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNP 586 (792)
Q Consensus 522 pdg~~Lasgs~D-----g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----------~Dg~V~IWdl~s~ 586 (792)
++++++++.... +.|.++|..+++.+.++.....+ .++++||+++|+++. .++.|.++|..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t- 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT- 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-
Confidence 466666665542 69999999999999999866665 899999999888886 367899999998
Q ss_pred CceeEEeccc-------CCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeEEEeeCCeeEEEEecCC-CEEEEEEc
Q 003840 587 GYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHL-GRYLAAAA 657 (792)
Q Consensus 587 ~~~i~~~~~h-------~~~V~sl~fspd~~~ll~sgs~-Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~-~~lla~s~ 657 (792)
.+.+..+.-. ......+.|+||+++++++... ++.|.++|+.+++.+..+..+.. ....|++ ..+++.+.
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCR 237 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEET
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcC
Confidence 5555555321 1234578999999988766543 68999999999999988775433 3344443 56677788
Q ss_pred CCeEEEEECCCCeEEEEe----cCCCCCe-EEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC---------
Q 003840 658 ENVVSILDAETQACRLSL----QGHTKPI-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN--------- 722 (792)
Q Consensus 658 dg~I~i~D~~t~~~~~~l----~~h~~~V-~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~--------- 722 (792)
||.+.+.+..+++..... .....++ ..+.|.+++..++..+.. .|.+.|+..... ..+..+...
T Consensus 238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~g~ 316 (426)
T 3c75_H 238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERADDW 316 (426)
T ss_dssp TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGGTE
T ss_pred CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeecccccccccc
Confidence 999998898666555321 1112221 235678988877766666 899999865321 111111100
Q ss_pred -CCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-CCCcEE
Q 003840 723 -GNKFHSCVFHPTYPSLLVIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVK 789 (792)
Q Consensus 723 -~~~i~si~fspdg~~L~sgs~----------dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~-~LaSgs-~DG~I~ 789 (792)
......++++++++++++... .+.|.++|+.+.+.+....-.....+++|++|++ +|+++. .++.|.
T Consensus 317 ~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 317 RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence 011223689999998888753 3479999999999884443334688999999999 888888 489999
Q ss_pred EeC
Q 003840 790 LWK 792 (792)
Q Consensus 790 IWd 792 (792)
|+|
T Consensus 397 VID 399 (426)
T 3c75_H 397 IYD 399 (426)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=2.1e-13 Score=162.85 Aligned_cols=265 Identities=11% Similarity=-0.036 Sum_probs=170.8
Q ss_pred cCCCCEEEEEeCCC-----eEEEEECCCCceeEEec------cCCCCEEEEEECCCCCeEEE-----EeCCCcEEEEeCC
Q 003840 521 SSDGKLLATGGHDK-----KAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLAT-----SSFDKTVRVWDAD 584 (792)
Q Consensus 521 spdg~~Lasgs~Dg-----~I~vWdl~t~~~~~~l~------~h~~~V~~i~fspdg~~Las-----gs~Dg~V~IWdl~ 584 (792)
+++|++++....++ .|++.+...++....+. +|...+..++|+|||++||. |+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47898888776543 34555555554433332 35557999999999999884 3445689999999
Q ss_pred CCCceeEEecccCCCe--EEEEEcCCCCeEEEEEeCCCc-------------EEEEEcCCCee--EEEee-----CCeeE
Q 003840 585 NPGYSLRTFMGHSASV--MSLDFHPNKDDLICSCDGDGE-------------IRYWSINNGSC--TRVFK-----GGTAQ 642 (792)
Q Consensus 585 s~~~~i~~~~~h~~~V--~sl~fspd~~~ll~sgs~Dg~-------------I~iwdl~~~~~--~~~~~-----~~~~~ 642 (792)
++. .+. ..+...+ ..++|+||++.++++ +.|.. |++|++.++.. ...+. .....
T Consensus 156 tg~-~~~--~~~~~~~~~~~~~wspDg~~l~~~-~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~ 231 (695)
T 2bkl_A 156 SGE-WSK--VDVIEGGKYATPKWTPDSKGFYYE-WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ 231 (695)
T ss_dssp TCC-BCS--SCCBSCCTTCCCEECTTSSEEEEE-ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred CCC-CcC--CcccCcccccceEEecCCCEEEEE-EecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence 843 320 1121222 689999999876654 44554 99999998762 22332 24567
Q ss_pred EEEecCCCEEEEEEcCC----eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe---CC-eEEEEECCCCCCcc
Q 003840 643 MRFQPHLGRYLAAAAEN----VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS---ED-SVRVWTVGSGSEGE 714 (792)
Q Consensus 643 v~~sp~~~~lla~s~dg----~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s---~d-~I~IwDl~s~~~~~ 714 (792)
+.|+|++.++++++.++ .|++||..+++... +..+...+....| ++|.+++... .+ .|.+||+.++....
T Consensus 232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~ 309 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARAS 309 (695)
T ss_dssp EEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred EEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccC
Confidence 89999999998888765 78888776654433 3345555666667 5566444443 13 89999997763211
Q ss_pred eEEEeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEEC--CCCcEEEEccc-CCCeEEEEEeCCCCEEEEEe----CCC
Q 003840 715 CVHELSCN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNM--SENKTMTLTAH-EGLIAALAVSTETGYVASAS----HDK 786 (792)
Q Consensus 715 ~i~~~~~~-~~~i~si~fspdg~~L~sgs~dg~I~IwDl--~~~~~~~~~~h-~~~V~sl~fspdg~~LaSgs----~DG 786 (792)
....+..+ ...+..++|+ ++..+++...++..+||.+ .......+..+ .+.|..++++++++.|+... ..+
T Consensus 310 ~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~ 388 (695)
T 2bkl_A 310 WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPR 388 (695)
T ss_dssp CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEE
T ss_pred CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence 22223333 4457888888 6677788888887666644 33333344444 66788889999998766332 246
Q ss_pred cEEEeC
Q 003840 787 FVKLWK 792 (792)
Q Consensus 787 ~I~IWd 792 (792)
.|++||
T Consensus 389 ~v~~~d 394 (695)
T 2bkl_A 389 QIYKTS 394 (695)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 788875
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=1.9e-11 Score=128.20 Aligned_cols=235 Identities=10% Similarity=0.033 Sum_probs=162.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 590 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~-~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i 590 (792)
...+.+++++++|+++++...++.|.+||.+ ++.. ..+......+.+|++.+++.++++...++.|.+||. ++....
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~ 133 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE 133 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE
Confidence 4568999999999988887778899999986 3322 222235567999999999988888777889999998 423222
Q ss_pred EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE-ee---CCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003840 591 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FK---GGTAQMRFQPHLGRYLAAAAENVVSILDA 666 (792)
Q Consensus 591 ~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~-~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D~ 666 (792)
.........+.++++.+++. ++++...++.|.+||. +++.... .. .....+++.+++..+++...++.|.+||.
T Consensus 134 ~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 134 YELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp EECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred ecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 22333456789999999874 5556666789999999 6665443 22 23557888888775555555789999999
Q ss_pred CCCeEEE-EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003840 667 ETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 744 (792)
Q Consensus 667 ~t~~~~~-~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d 744 (792)
+++... .+..+...+.+++++++|+++++...+ .|.+||.. + . .....+......+.++++ +++..++ ++..
T Consensus 212 -~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g-~-~~~~~~~~~~~~~~~i~~-~~g~l~v-~~~~ 285 (299)
T 2z2n_A 212 -SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-N-I-IEEYPIQIKSAEPHGICF-DGETIWF-AMEC 285 (299)
T ss_dssp -TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-T-E-EEEEECSSSSCCEEEEEE-CSSCEEE-EETT
T ss_pred -CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-C-c-eEEEeCCCCCCccceEEe-cCCCEEE-EecC
Confidence 665433 233355678999999999977766454 99999983 2 1 111122344567889999 8777544 4446
Q ss_pred CeEEEEECCCCc
Q 003840 745 QSLELWNMSENK 756 (792)
Q Consensus 745 g~I~IwDl~~~~ 756 (792)
+.|..++..+++
T Consensus 286 ~~l~~~~~~~~~ 297 (299)
T 2z2n_A 286 DKIGKLTLIKDN 297 (299)
T ss_dssp TEEEEEEEC---
T ss_pred CcEEEEEcCccc
Confidence 788888876654
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.54 E-value=4.2e-12 Score=134.76 Aligned_cols=239 Identities=12% Similarity=0.113 Sum_probs=165.7
Q ss_pred ecCCCCeEEEEEcCCCCEEEE-------EeCCCeEEEEECCCCceeEEec----cCCCCEEEEEECCC-CCeEEEEeCCC
Q 003840 509 RASTSKVICCHFSSDGKLLAT-------GGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPS-MPRLATSSFDK 576 (792)
Q Consensus 509 ~~H~~~V~~lafspdg~~Las-------gs~Dg~I~vWdl~t~~~~~~l~----~h~~~V~~i~fspd-g~~Lasgs~Dg 576 (792)
...-....+++|+++|+++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++ +.++
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCC
Confidence 444556789999999988887 5778999999988877643322 24567999999999 654444 4444
Q ss_pred cEEEEeCCCCCceeEE-ecc----cCCCeEEEEEcCCCCeEEEEEeCC---------------CcEEEEEcCCCeeEEEe
Q 003840 577 TVRVWDADNPGYSLRT-FMG----HSASVMSLDFHPNKDDLICSCDGD---------------GEIRYWSINNGSCTRVF 636 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~-~~~----h~~~V~sl~fspd~~~ll~sgs~D---------------g~I~iwdl~~~~~~~~~ 636 (792)
.|.+||.+ +..... ... ....+.++++.+++. ++++...+ +.|..||.. ++.....
T Consensus 93 ~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 93 GLLVVQTD--GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp EEEEEETT--SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred CEEEEeCC--CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 79999987 332222 111 124588999999976 44455444 567777766 5544332
Q ss_pred e--CCeeEEEEe----cCCCEEEEEE-cCCeEEEEECC-CCe-----EEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-e
Q 003840 637 K--GGTAQMRFQ----PHLGRYLAAA-AENVVSILDAE-TQA-----CRLSLQGHT-KPIDSVCWDPSGELLASVSED-S 701 (792)
Q Consensus 637 ~--~~~~~v~~s----p~~~~lla~s-~dg~I~i~D~~-t~~-----~~~~l~~h~-~~V~sv~~spdg~~Las~s~d-~ 701 (792)
. .....++++ ++++.++++. .++.|.+||.+ +++ ....+..+. ..+..++++++|+++++...+ .
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 2 345678899 8887776665 57899999976 443 233344343 567899999999988887666 9
Q ss_pred EEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 003840 702 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSEN 755 (792)
Q Consensus 702 I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~~~ 755 (792)
|.+||..++. .+..+..+...+.+++|++++++|++++. ++.|..|++...
T Consensus 249 i~~~d~~~g~---~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 249 IEVFGPDGGQ---PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEECTTCBS---CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEEcCCCCc---EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 9999987553 33444455577899999999996666654 578999998653
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.53 E-value=4.7e-13 Score=160.95 Aligned_cols=243 Identities=12% Similarity=0.067 Sum_probs=163.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCc--------
Q 003840 511 STSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT-------- 577 (792)
Q Consensus 511 H~~~V~~lafspdg~~Lasgs~D-----g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~-------- 577 (792)
|...+..++|||||++||.+..+ ..|++||+++++.+... .+...+..++|+|| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44468899999999999987654 46999999999876532 12222357899999 98888887654
Q ss_pred ------EEEEeCCCCCce-eEEec--ccCCCeEEEEEcCCCCeEEEEEeC----CCcEEEEEcCCC--eeEEEeeC---C
Q 003840 578 ------VRVWDADNPGYS-LRTFM--GHSASVMSLDFHPNKDDLICSCDG----DGEIRYWSINNG--SCTRVFKG---G 639 (792)
Q Consensus 578 ------V~IWdl~s~~~~-i~~~~--~h~~~V~sl~fspd~~~ll~sgs~----Dg~I~iwdl~~~--~~~~~~~~---~ 639 (792)
|++|++.++... ...+. .+...+..+.|+|||+.+++++.. +..|++||+.++ ++...+.. .
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 899999764321 22232 333468899999999887766643 348999999877 41233322 2
Q ss_pred eeEEEEecCCCEEEEEEcC----CeEEEEECCCC--eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC-CCC
Q 003840 640 TAQMRFQPHLGRYLAAAAE----NVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG-SGS 711 (792)
Q Consensus 640 ~~~v~~sp~~~~lla~s~d----g~I~i~D~~t~--~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~-s~~ 711 (792)
.... +.++++.|++.+.+ +.|.+||+.++ .....+..+...+..++|+ ++.++++...+ ..+||.+. ++
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 395 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG- 395 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS-
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 2223 45889998888764 46999999884 3444444455557778887 55667777666 55555443 22
Q ss_pred CcceEEEeec-CCCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCcEEEE
Q 003840 712 EGECVHELSC-NGNKFHSCVFHPTYPSLLVIGC----YQSLELWNMSENKTMTL 760 (792)
Q Consensus 712 ~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~----dg~I~IwDl~~~~~~~~ 760 (792)
..+..+.. ....+..+.++|+++.|+.... .+.|++||+.+++...+
T Consensus 396 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 396 --KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp --CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred --CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 34455544 3566888999999876664433 25899999998875444
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=8.7e-12 Score=132.27 Aligned_cols=236 Identities=7% Similarity=-0.013 Sum_probs=161.0
Q ss_pred ccCCCCEEEEEECCCCCeEEE-------EeCCCcEEEEeCCCCCceeEEecc-----cCCCeEEEEEcCCCCeEEEEEeC
Q 003840 551 EEHSSLITDVRFSPSMPRLAT-------SSFDKTVRVWDADNPGYSLRTFMG-----HSASVMSLDFHPNKDDLICSCDG 618 (792)
Q Consensus 551 ~~h~~~V~~i~fspdg~~Las-------gs~Dg~V~IWdl~s~~~~i~~~~~-----h~~~V~sl~fspd~~~ll~sgs~ 618 (792)
...-....+++|++++.++++ +..++.|.+||..+. .. ..+.. +...+.++++++++..++++..
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g-~~-~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~- 90 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG-KK-TVICKPEVNGYGGIPAGCQCDRDANQLFVADM- 90 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC-CE-EEEECCEETTEECCEEEEEECSSSSEEEEEET-
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC-cE-EEEEecccCCCCCCCceEEEecCCCcEEEEEC-
Confidence 334456789999999988877 677899999998763 32 22222 4567899999998334554443
Q ss_pred CCcEEEEEcCCCeeEEE-ee-------CCeeEEEEecCCCEEEEEEcC---------------CeEEEEECCCCeEEEEe
Q 003840 619 DGEIRYWSINNGSCTRV-FK-------GGTAQMRFQPHLGRYLAAAAE---------------NVVSILDAETQACRLSL 675 (792)
Q Consensus 619 Dg~I~iwdl~~~~~~~~-~~-------~~~~~v~~sp~~~~lla~s~d---------------g~I~i~D~~t~~~~~~l 675 (792)
++.|.+||.. ++.... .. .....+++.+++..+++...+ +.|..||.. ++.....
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 4579999998 765443 22 135678999987766655544 578888876 5443322
Q ss_pred cCCCCCeEEEEEc----CCCCEEEEEe-CC-eEEEEECC-CCCC--cceEEEeecCC-CceEEEEEeCCCCEEEEEEcCC
Q 003840 676 QGHTKPIDSVCWD----PSGELLASVS-ED-SVRVWTVG-SGSE--GECVHELSCNG-NKFHSCVFHPTYPSLLVIGCYQ 745 (792)
Q Consensus 676 ~~h~~~V~sv~~s----pdg~~Las~s-~d-~I~IwDl~-s~~~--~~~i~~~~~~~-~~i~si~fspdg~~L~sgs~dg 745 (792)
. +......++|+ ++++.|+.+. .+ .|.+||+. .+.. ...+..+..+. ..+..++++++|.++++...++
T Consensus 169 ~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 169 T-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp E-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred c-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 2 33456889999 9997665554 44 89999986 2211 11223333333 5678899999998777777888
Q ss_pred eEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE-eCCCcEEEeC
Q 003840 746 SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 792 (792)
Q Consensus 746 ~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSg-s~DG~I~IWd 792 (792)
.|.+||..+++.+ .+..+...+.+++|++++++|+.+ ..++.|..|+
T Consensus 248 ~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 9999999866544 455566789999999999955544 4567787764
No 205
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.49 E-value=5.4e-12 Score=133.09 Aligned_cols=207 Identities=11% Similarity=0.079 Sum_probs=161.1
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCceeEEecccC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC----C
Q 003840 565 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----G 639 (792)
Q Consensus 565 dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~-~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~ 639 (792)
.+++|++++.|+.|.+||.++ ++.+..+..+. ..+.++.+.|+++ +++ +.++.|+.||. +++.+..++. .
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~t-G~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDT-KEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTT-TEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCC-CeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 356899999999999999977 67777777665 5788999999986 444 34788999999 7988888874 3
Q ss_pred eeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecC------CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 003840 640 TAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG------HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 711 (792)
Q Consensus 640 ~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~------h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~ 711 (792)
+..+.+.++++.+++.+. ++.|..+|. +++.+..+.. +......+++.++|++|++...+ .|.+||.. +
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G- 155 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G- 155 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-
Confidence 456788999999998887 788888886 6777666542 11235567789999999998887 99999986 5
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccC------CCeEEEEEeCCCCEEEEE
Q 003840 712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE------GLIAALAVSTETGYVASA 782 (792)
Q Consensus 712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~------~~V~sl~fspdg~~LaSg 782 (792)
+.+..+... ..+.++.+.++++.++++..++.|..||..+++.+ .+..+. ..+..+...++|.++++.
T Consensus 156 --~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 156 --QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp --CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred --CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 566666554 34566788899999988888889999999988887 343222 237888889999988876
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=1.4e-12 Score=156.92 Aligned_cols=266 Identities=14% Similarity=0.053 Sum_probs=168.6
Q ss_pred cCCCCEEEEEeCCCe---EEEE--ECC---CCceeEEe------ccCCCCEEEEEECCCCCeEEEEeCC-----CcEEEE
Q 003840 521 SSDGKLLATGGHDKK---AVLW--HTD---TLKSKTNL------EEHSSLITDVRFSPSMPRLATSSFD-----KTVRVW 581 (792)
Q Consensus 521 spdg~~Lasgs~Dg~---I~vW--dl~---t~~~~~~l------~~h~~~V~~i~fspdg~~Lasgs~D-----g~V~IW 581 (792)
+|||++++....++. -.|| +.. .++....+ .+|...+..++|+|||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 389998887765433 4444 444 33333222 1233468899999999999887654 359999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC-------------cEEEEEcCCCee--EEEeeC-----Cee
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-------------EIRYWSINNGSC--TRVFKG-----GTA 641 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg-------------~I~iwdl~~~~~--~~~~~~-----~~~ 641 (792)
|+.+ +..+.. ..+...+..++|+|| +.++++...+. .|++|++.++.. ...+.. ...
T Consensus 195 dl~t-g~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~ 271 (741)
T 1yr2_A 195 GVAD-GKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH 271 (741)
T ss_dssp ETTT-CCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred ECCC-CCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence 9997 444332 112222357899999 77776654322 399999987652 223322 256
Q ss_pred EEEEecCCCEEEEEEcCC-----eEEEEECCCC--eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-----eEEEEECCC
Q 003840 642 QMRFQPHLGRYLAAAAEN-----VVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSED-----SVRVWTVGS 709 (792)
Q Consensus 642 ~v~~sp~~~~lla~s~dg-----~I~i~D~~t~--~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-----~I~IwDl~s 709 (792)
.+.|+|++.+++..+.++ .|++||+.++ ++...+..+...+.... +++|+.|+..+.+ .|.+||+.+
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 788999999988887643 8999999877 31344444555555553 4889888877653 599999876
Q ss_pred CCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcEEEEcc-cCCCeEEEEEeCCCCEEEEE-e--
Q 003840 710 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTMTLTA-HEGLIAALAVSTETGYVASA-S-- 783 (792)
Q Consensus 710 ~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~~~~~-h~~~V~sl~fspdg~~LaSg-s-- 783 (792)
+. ......+..+...+..++|. ++..+++...++..+|| ++..+....+.. +.+.|..++++++++.|+.. +
T Consensus 351 ~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 428 (741)
T 1yr2_A 351 ST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSF 428 (741)
T ss_dssp SS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEET
T ss_pred Cc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 42 12233334444556677777 55567777778865555 554443334443 46778899999998755532 2
Q ss_pred -CCCcEEEeC
Q 003840 784 -HDKFVKLWK 792 (792)
Q Consensus 784 -~DG~I~IWd 792 (792)
..+.|++||
T Consensus 429 ~~P~~i~~~d 438 (741)
T 1yr2_A 429 TQPATVLALD 438 (741)
T ss_dssp TEEEEEEEEE
T ss_pred CCCCEEEEEE
Confidence 246788775
No 207
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.48 E-value=1.5e-12 Score=141.59 Aligned_cols=265 Identities=8% Similarity=-0.014 Sum_probs=173.7
Q ss_pred eeeeeeecCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeEEe-------ccCCCCEEEEEECCCCCeEEEEe
Q 003840 503 KEANSVRASTSKVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKTNL-------EEHSSLITDVRFSPSMPRLATSS 573 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs--~Dg~I~vWdl~t~~~~~~l-------~~h~~~V~~i~fspdg~~Lasgs 573 (792)
+.+..+. ..+..++++++|+++++.. .++.++||.+.+++.. .+ ..+...+.+|+|+++++++++-.
T Consensus 10 ~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~ 85 (343)
T 2qe8_A 10 EVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDN 85 (343)
T ss_dssp EEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEEC
T ss_pred EEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcC
Confidence 4444443 6799999999999988864 2343556655455432 22 23557899999999987666554
Q ss_pred C-----CCcEEEEeCCCCCceeEEecc------cCCCeEEEEEcCCCCeEEEEEe---CCCcEEEEEcCCCeeEEEeeCC
Q 003840 574 F-----DKTVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGG 639 (792)
Q Consensus 574 ~-----Dg~V~IWdl~s~~~~i~~~~~------h~~~V~sl~fspd~~~ll~sgs---~Dg~I~iwdl~~~~~~~~~~~~ 639 (792)
. ++.|.+||+.+ +..+..+.. +...+..|++.+++..++++.. .++.|.+||+.+++..+.+..+
T Consensus 86 g~~~~~~~~i~~~d~~t-g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~ 164 (343)
T 2qe8_A 86 GNQSKSVPKLVAWDTLN-NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGY 164 (343)
T ss_dssp HHHHTSCCEEEEEETTT-TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTC
T ss_pred CCCcCCCCeEEEEECCC-CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCC
Confidence 3 57899999987 454554432 2245689999987666766665 6889999999988877665431
Q ss_pred --ee--EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCC---C
Q 003840 640 --TA--QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGS---G 710 (792)
Q Consensus 640 --~~--~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s---~ 710 (792)
.. ...+..++..+.+...++.+..|. ..+..|+|+|+|++|+++... .|..++... +
T Consensus 165 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~ 230 (343)
T 2qe8_A 165 PGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL 230 (343)
T ss_dssp TTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT
T ss_pred CcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC
Confidence 10 133444544455555566654442 236789999999988887765 555555321 1
Q ss_pred C--Ccc---eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc--cCCCeEEEEEeCCCCEEEEEe
Q 003840 711 S--EGE---CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASAS 783 (792)
Q Consensus 711 ~--~~~---~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~--h~~~V~sl~fspdg~~LaSgs 783 (792)
. ... .+.. .++......++++++|..+++...++.|.+||..+++...+.. +...+.+++|.+++.++++.+
T Consensus 231 ~~~~~~~~~~~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 231 QLTDAELGSKIER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp TCCHHHHHTTCEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred CCChhhhhcceEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 0 000 0111 1223345678999999888887788899999995566543332 345789999999998888876
Q ss_pred CCCc
Q 003840 784 HDKF 787 (792)
Q Consensus 784 ~DG~ 787 (792)
..+.
T Consensus 310 ~~~~ 313 (343)
T 2qe8_A 310 QLHH 313 (343)
T ss_dssp CGGG
T ss_pred cccc
Confidence 5433
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.48 E-value=3.3e-11 Score=134.51 Aligned_cols=230 Identities=11% Similarity=0.091 Sum_probs=164.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC--cEEEEeCCCCCcee
Q 003840 513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSL 590 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg--~V~IWdl~s~~~~i 590 (792)
....+|+|+++|+++++...++.|++||.+++.....+.... ... ++|+++++.|+++..++ .|.+|+..... ..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~-~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW-AP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT-CE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc-ee
Confidence 468899999999988887778999999999887766555433 333 99999999999988866 78888887633 33
Q ss_pred EEe----cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE----eeC--Ce--e-EEEEecCCCEEEEEEc
Q 003840 591 RTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKG--GT--A-QMRFQPHLGRYLAAAA 657 (792)
Q Consensus 591 ~~~----~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~~--~~--~-~v~~sp~~~~lla~s~ 657 (792)
..+ ......+.+++++|++..+++ +..++.|+.||..++..... ..+ .. . .++|+|+++.++++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 333 224566789999996566665 67788999999987764332 111 11 2 8999997777766654
Q ss_pred -CCeEEEEECCCCeEEEEecCCC---------------CCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceEEEe
Q 003840 658 -ENVVSILDAETQACRLSLQGHT---------------KPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHEL 719 (792)
Q Consensus 658 -dg~I~i~D~~t~~~~~~l~~h~---------------~~V~sv~~spdg~~Las~s-~d-~I~IwDl~s~~~~~~i~~~ 719 (792)
++.|+.||.... +..+.++. .....++|+++|+++++.. .+ .|++||+.++ .+..+
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G----~v~~~ 360 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG----YVSTV 360 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT----EEEEE
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC----EEEEE
Confidence 689999997754 22232221 3478899999999777776 66 9999997655 23333
Q ss_pred ecC---------------CCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003840 720 SCN---------------GNKFHSCVFHPTYPSLLVIGCYQSLELWNM 752 (792)
Q Consensus 720 ~~~---------------~~~i~si~fspdg~~L~sgs~dg~I~IwDl 752 (792)
.++ -.....+++++++.++++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 332 245789999999766666566678887765
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.46 E-value=3e-11 Score=134.79 Aligned_cols=228 Identities=13% Similarity=0.062 Sum_probs=160.6
Q ss_pred CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC--cEEEEEcCCCee
Q 003840 555 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSC 632 (792)
Q Consensus 555 ~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg--~I~iwdl~~~~~ 632 (792)
.....|+|+++++++++...++.|++||+.+ +........ ..... ++|++++..++ +++.++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~-g~~~~~~~~-~~~~~-ia~~~~g~~l~-~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDD-NKVTTVHPG-FKGGK-PAVTKDKQRVY-SIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTT-TEEEEEEET-CCBCB-CEECTTSSEEE-EEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCC-CEEEEeecc-CCCCc-eeEecCCCcEE-EEecCCCceEEEEEcCCCce
Confidence 4688999999998777777789999999986 333333333 33333 99999987655 555544 799999876654
Q ss_pred EEEe-------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE----ecCCCCCe--EEEEEcCCCC-EEEEEe
Q 003840 633 TRVF-------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS----LQGHTKPI--DSVCWDPSGE-LLASVS 698 (792)
Q Consensus 633 ~~~~-------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~----l~~h~~~V--~sv~~spdg~-~Las~s 698 (792)
...+ ......++++|+++.|+++..++.|+.||..++..... ..++.... ..++|+|++. ++++..
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 3333 13456789999778888877788999999988764333 22222222 3899999644 444444
Q ss_pred CC-eEEEEECCCCCCcceEEEeecC---------------CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEEc
Q 003840 699 ED-SVRVWTVGSGSEGECVHELSCN---------------GNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLT 761 (792)
Q Consensus 699 ~d-~I~IwDl~s~~~~~~i~~~~~~---------------~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~~~ 761 (792)
.+ .|+.|+.... +..+.+. -.....++|+++|.++++-. .++.|+.||+.++....+.
T Consensus 287 ~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 287 NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 44 8999987532 2222222 23478999999999665555 6789999998888877666
Q ss_pred cc---------------CCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 762 AH---------------EGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 762 ~h---------------~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
++ -.....|++++++.++++-..+++|+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 55 2468899999998877777778888765
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.46 E-value=5.4e-12 Score=140.70 Aligned_cols=251 Identities=12% Similarity=0.139 Sum_probs=178.8
Q ss_pred CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeEEeccC-------CCCEEEEE
Q 003840 499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH-------SSLITDVR 561 (792)
Q Consensus 499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs----------~Dg~I~vWdl~t~~~~~~l~~h-------~~~V~~i~ 561 (792)
..+.+.+..+..-..+ .++|+|||++|+++. .++.|.++|..+++.+.++.-. ......+.
T Consensus 106 ~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~ 183 (426)
T 3c75_H 106 GSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNA 183 (426)
T ss_dssp TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSE
T ss_pred CCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEE
Confidence 3445566666655555 899999999888876 3678999999999998887532 23356789
Q ss_pred ECCCCCeEEEEeC--CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE----
Q 003840 562 FSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV---- 635 (792)
Q Consensus 562 fspdg~~Lasgs~--Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~---- 635 (792)
|+||+++|+++.. ++.|.++|+.+ .+.+..+.-.. +....|++...+++.+.||.+.+.++.+++....
T Consensus 184 ~spDGk~lyV~n~~~~~~VsVID~~t-~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~ 258 (426)
T 3c75_H 184 LTPDNKNLLFYQFSPAPAVGVVDLEG-KTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEV 258 (426)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCC
T ss_pred EcCCCCEEEEEecCCCCeEEEEECCC-CeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeee
Confidence 9999999999874 57899999998 55666655321 1344565556666777899999999866665532
Q ss_pred eeCC----eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE--EecC----------CCCCeEEEEEcCCCCEEEEEeC
Q 003840 636 FKGG----TAQMRFQPHLGRYLAAAAENVVSILDAETQACRL--SLQG----------HTKPIDSVCWDPSGELLASVSE 699 (792)
Q Consensus 636 ~~~~----~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~--~l~~----------h~~~V~sv~~spdg~~Las~s~ 699 (792)
+... ...+.+.++++.+++....+.|.++|........ .+.. .......++++++++++++...
T Consensus 259 ~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~ 338 (426)
T 3c75_H 259 FHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVD 338 (426)
T ss_dssp CSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred eccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEec
Confidence 2111 1235678899998888889999999997654321 1110 0111223789999887666531
Q ss_pred -----------CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEE
Q 003840 700 -----------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMTL 760 (792)
Q Consensus 700 -----------d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~~ 760 (792)
+.|.++|+.+. +.+..+... .....++|+||++ ++++.. .++.|.|+|+.+++.+..
T Consensus 339 ~~~~gthk~~s~~VsVID~~T~---kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 339 QRDEWKHKAASRFVVVLNAETG---ERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp ECCTTCTTSCEEEEEEEETTTC---CEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred ccccccccCCCCEEEEEECCCC---eEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 27999999887 555555432 2578999999999 888888 489999999999998843
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.44 E-value=3e-12 Score=152.79 Aligned_cols=244 Identities=11% Similarity=0.035 Sum_probs=166.7
Q ss_pred cCCCCeEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCc-------
Q 003840 510 ASTSKVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT------- 577 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs-----~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~------- 577 (792)
+|...|..++|||||++||.+. ....|+|||+++++.+.... +......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 4566788999999999998643 23579999999998654311 11113567899 9999999888743
Q ss_pred ------EEEEeCCCCCc---eeEEecc-cCCCeEEEEEcCCCCeEEEEEeCC---CcEEEEEcCCCe-eEEEeeCC--ee
Q 003840 578 ------VRVWDADNPGY---SLRTFMG-HSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGS-CTRVFKGG--TA 641 (792)
Q Consensus 578 ------V~IWdl~s~~~---~i~~~~~-h~~~V~sl~fspd~~~ll~sgs~D---g~I~iwdl~~~~-~~~~~~~~--~~ 641 (792)
|++|++.+... .+..... |...+.++.|+||++.++++...+ ..|++||+.++. ....+... ..
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 99999987443 2222233 455678999999999888776543 589999998763 22333221 12
Q ss_pred EEEEecCCCEEEEEEcC----CeEEEEECCCCeE--EEEecCCCCCeEEEEEcCCCCEEEEEeC-C---eEEEEECCCCC
Q 003840 642 QMRFQPHLGRYLAAAAE----NVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSE-D---SVRVWTVGSGS 711 (792)
Q Consensus 642 ~v~~sp~~~~lla~s~d----g~I~i~D~~t~~~--~~~l~~h~~~V~sv~~spdg~~Las~s~-d---~I~IwDl~s~~ 711 (792)
...++++++.++..+.. +.|.++|+.++.. ...+..|...+. .|++++++|+.... + .|++||+..+
T Consensus 284 ~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~- 360 (693)
T 3iuj_A 284 VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK- 360 (693)
T ss_dssp EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence 22377788888776653 5899999988643 234555655555 88898988776653 3 6899998643
Q ss_pred CcceEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCcEEEEc
Q 003840 712 EGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTLT 761 (792)
Q Consensus 712 ~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~d----g~I~IwDl~~~~~~~~~ 761 (792)
....+.. ....+..+.++++++.|+....+ +.|+.||+.+++...+.
T Consensus 361 ---~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 361 ---RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp ---EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred ---eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 3333332 33456777888888877776655 79999999888755443
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.44 E-value=3.9e-12 Score=140.03 Aligned_cols=173 Identities=12% Similarity=0.091 Sum_probs=139.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------eeE-EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003840 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---------SKT-NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~---------~~~-~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl 583 (792)
.+..+++++...+|++|+.++ ++||++++.. ... ....+.. |+.|+| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 689999999999999999884 5669876433 111 2223556 999999 88999999 8899999999
Q ss_pred CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003840 584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI 663 (792)
Q Consensus 584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i 663 (792)
.+.. .......|...|.++.+.+. . ++++..||.|.+||+.++.... +...+.+++|+|++ ++++..||.|++
T Consensus 114 ~sl~-~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~-~~~~Vs~v~WSpkG--~~vg~~dg~i~~ 186 (388)
T 1xip_A 114 EELS-EFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ-LAQNVTSFDVTNSQ--LAVLLKDRSFQS 186 (388)
T ss_dssp SSTT-CEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE-EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred hhhh-ccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc-ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence 8743 45556677888988888755 2 6678899999999999887654 56789999999998 788999999999
Q ss_pred EECCCCeE--EEEe------c---CCCCCeEEEEEcCCCCEEEEEe
Q 003840 664 LDAETQAC--RLSL------Q---GHTKPIDSVCWDPSGELLASVS 698 (792)
Q Consensus 664 ~D~~t~~~--~~~l------~---~h~~~V~sv~~spdg~~Las~s 698 (792)
|+.+...+ ..++ . +|...|.+|+|.+++.++++-.
T Consensus 187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 187 FAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99988876 5566 3 3778899999999999888743
No 213
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.43 E-value=3e-10 Score=119.00 Aligned_cols=232 Identities=12% Similarity=-0.004 Sum_probs=163.7
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 003840 553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 632 (792)
Q Consensus 553 h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~ 632 (792)
....+.+|++.+++.++++...++.|.+||.. .......+......+.+|++.+++. ++++...++.|..||.. ++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-CCe
Confidence 45678999999999888877788999999987 2322222333446789999998875 55566667889999988 554
Q ss_pred EEE-ee---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE-EEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEE
Q 003840 633 TRV-FK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR-LSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT 706 (792)
Q Consensus 633 ~~~-~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~-~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwD 706 (792)
... .. .....+++.+++..+++...++.|..||.. ++.. ..+......+.+++++++|+++++...+ .|.+||
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 322 11 345678888887666655557899999988 5544 3333345678999999999977766655 899999
Q ss_pred CCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEE--cccCCCeEEEEEeCCCCEEEEEeC
Q 003840 707 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL--TAHEGLIAALAVSTETGYVASASH 784 (792)
Q Consensus 707 l~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~--~~h~~~V~sl~fspdg~~LaSgs~ 784 (792)
. ++.. . ..........+..+++.+++..+++....+.|.+||. +++...+ ..+...+.+++++++|+++++...
T Consensus 174 ~-~g~~-~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 249 (300)
T 2qc5_A 174 N-TGKL-E-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG 249 (300)
T ss_dssp T-TCCE-E-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred C-CCcE-E-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC
Confidence 8 3321 1 1222234456889999999976665555678999998 5554433 345567899999999987776656
Q ss_pred CCcEEEeC
Q 003840 785 DKFVKLWK 792 (792)
Q Consensus 785 DG~I~IWd 792 (792)
++.|.+||
T Consensus 250 ~~~i~~~~ 257 (300)
T 2qc5_A 250 ANQIGRIT 257 (300)
T ss_dssp TTEEEEEC
T ss_pred CCeEEEEC
Confidence 78888875
No 214
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.42 E-value=2.1e-12 Score=141.71 Aligned_cols=260 Identities=9% Similarity=0.029 Sum_probs=177.6
Q ss_pred CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeEEeccC-------CCCEEEEE
Q 003840 499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH-------SSLITDVR 561 (792)
Q Consensus 499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs----------~Dg~I~vWdl~t~~~~~~l~~h-------~~~V~~i~ 561 (792)
..+++.+.++.....+ .++|+|||++|+++. .++.|.+||+.+++.+.++... ......++
T Consensus 53 ~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia 130 (368)
T 1mda_H 53 AGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG 130 (368)
T ss_dssp TTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred CCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEE
Confidence 3445666777655556 799999999998886 3688999999999999998643 13456899
Q ss_pred ECCCCCeEEEEeC--CCcEEE--EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-----Cee
Q 003840 562 FSPSMPRLATSSF--DKTVRV--WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-----GSC 632 (792)
Q Consensus 562 fspdg~~Lasgs~--Dg~V~I--Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-----~~~ 632 (792)
|+|||++|+++.. +..|.+ +|+.+ +..+.. .+. +.+.|++...+++.+.||.+.+.|+.+ ++.
T Consensus 131 ~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v 202 (368)
T 1mda_H 131 NCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV 202 (368)
T ss_dssp ECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred EcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeE
Confidence 9999999999875 456888 88876 333321 111 224566666777778899999999987 443
Q ss_pred EE----EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEecCC----------CCCeEEEEEcCCCCEEEE
Q 003840 633 TR----VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGH----------TKPIDSVCWDPSGELLAS 696 (792)
Q Consensus 633 ~~----~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~--~~~~~l~~h----------~~~V~sv~~spdg~~Las 696 (792)
.. .+..+..... .++++.++..+. +.|.+.|..+. +.+..+... ......++|+++++++++
T Consensus 203 ~~~~t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV 280 (368)
T 1mda_H 203 GAQCTGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp CCCSCTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred EEEeeeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence 31 1111111123 777788777777 99999999754 233322211 111223789999987775
Q ss_pred E-e---C------CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE-EEEE-cCCeEEEEECCCCcEEEEcccC
Q 003840 697 V-S---E------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL-LVIG-CYQSLELWNMSENKTMTLTAHE 764 (792)
Q Consensus 697 ~-s---~------d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L-~sgs-~dg~I~IwDl~~~~~~~~~~h~ 764 (792)
+ . . +.+.+||+.+. +.+..+.... ....++|++|++++ ++.. .++.|.++|+.+++.+....-.
T Consensus 281 ~~~~~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 281 LTVEHSRSCLAAAENTSSVTASVG---QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSC---CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred EeccccCcccccCCCEEEEECCCC---eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 4 2 2 36669999887 4555554332 68899999999854 4445 4899999999999998655555
Q ss_pred CCeEEEEEeC
Q 003840 765 GLIAALAVST 774 (792)
Q Consensus 765 ~~V~sl~fsp 774 (792)
.....+++.+
T Consensus 357 ~~P~~i~~~~ 366 (368)
T 1mda_H 357 KGPESLSVQN 366 (368)
T ss_dssp SCCCEEECCC
T ss_pred CCCCEEEeec
Confidence 5566777654
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.41 E-value=3.8e-10 Score=119.72 Aligned_cols=229 Identities=13% Similarity=0.118 Sum_probs=155.6
Q ss_pred eecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 508 VRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 508 l~~H~~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
+..+..-..+..|++++ .++++...++.|+.||..+++.. .+ .....+.+++|+++++++++ . ++.|.+||.++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~- 82 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE- 82 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT-
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCC-
Confidence 33445557789999954 45666667899999999887653 23 24567999999999985554 4 56799999986
Q ss_pred CceeEEecc----cCCCeEEEEEcCCCCeEEEEEeC--------CCcEEEEEcCC-CeeEEEee--CCeeEEEEecCCCE
Q 003840 587 GYSLRTFMG----HSASVMSLDFHPNKDDLICSCDG--------DGEIRYWSINN-GSCTRVFK--GGTAQMRFQPHLGR 651 (792)
Q Consensus 587 ~~~i~~~~~----h~~~V~sl~fspd~~~ll~sgs~--------Dg~I~iwdl~~-~~~~~~~~--~~~~~v~~sp~~~~ 651 (792)
+........ ....+.++++.+++..++.+... .....+|.+.. ++...... .....++|+++++.
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCE
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCE
Confidence 332221111 12457899999998744433322 12344555443 33332222 34567999999988
Q ss_pred EEEEEc-CCeEEEEEC--CCCeE-----EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC
Q 003840 652 YLAAAA-ENVVSILDA--ETQAC-----RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 722 (792)
Q Consensus 652 lla~s~-dg~I~i~D~--~t~~~-----~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~ 722 (792)
++++.. ++.|.+||+ .++.. ...+..+......++++++|+++++...+ .|.+||..++ +.+..+...
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---~~~~~i~~p 239 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---KRLQTVKLP 239 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---CEEEEEECS
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---eEEEEEECC
Confidence 766654 789999987 45533 22333334567899999999988877766 8999998766 566677766
Q ss_pred CCceEEEEEe-CCCCEEEEEEcC
Q 003840 723 GNKFHSCVFH-PTYPSLLVIGCY 744 (792)
Q Consensus 723 ~~~i~si~fs-pdg~~L~sgs~d 744 (792)
...+++|+|. |+++.|++++..
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEEBC
T ss_pred CCCceEEEEeCCCCCEEEEEcCC
Confidence 6789999998 898888777653
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.41 E-value=1.9e-10 Score=122.10 Aligned_cols=227 Identities=10% Similarity=0.040 Sum_probs=152.5
Q ss_pred eccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 003840 550 LEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 628 (792)
Q Consensus 550 l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~ 628 (792)
+..+.....+..|++++. ++++...++.|+.||..+.. . ..+ .....+.++++++++. ++++ . +..|.+||..
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~-~-~~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~ 81 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ-V-QRV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNWK 81 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-E-EEE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc-E-EEE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEECC
Confidence 334455667889999544 56666678899999998633 2 223 3457899999999987 4433 3 6789999999
Q ss_pred CCeeEEEeeC-------CeeEEEEecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 003840 629 NGSCTRVFKG-------GTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 690 (792)
Q Consensus 629 ~~~~~~~~~~-------~~~~v~~sp~~~~lla~s~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd 690 (792)
+++....... ....+++.+++..+++... .+.|+.+|.. ++... +..+....+.++|+|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCC
Confidence 8876543321 2456889999875554432 2345555553 33322 2223345678999999
Q ss_pred CCEEEEEeC-C-eEEEEECC--CCCC--cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEccc
Q 003840 691 GELLASVSE-D-SVRVWTVG--SGSE--GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH 763 (792)
Q Consensus 691 g~~Las~s~-d-~I~IwDl~--s~~~--~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h 763 (792)
++.|+.+.. + .|.+||+. ++.. ...+..+.........+++.++|.++++....+.|.+||..+++.+ .+..+
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 997765543 3 89999973 3321 1222333333456789999999987777777789999999988876 55556
Q ss_pred CCCeEEEEEe-CCCCEEEEEeC
Q 003840 764 EGLIAALAVS-TETGYVASASH 784 (792)
Q Consensus 764 ~~~V~sl~fs-pdg~~LaSgs~ 784 (792)
...+++++|. ||++.|+.++.
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCceEEEEeCCCCCEEEEEcC
Confidence 6789999998 88876655543
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.37 E-value=1.1e-09 Score=117.86 Aligned_cols=220 Identities=14% Similarity=0.098 Sum_probs=150.5
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003840 514 KVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 592 (792)
Q Consensus 514 ~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~ 592 (792)
-..+++|++++. ++++...++.|.+||.++++... +. ....|.+++|+++++++++. .++ |.+||..++ .. ..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~~g-~~-~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DDG-LFLRDTATG-VL-TL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TTE-EEEEETTTC-CE-EE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CCC-EEEEECCCC-cE-EE
Confidence 357889999754 55666678899999998876432 32 34679999999999876654 444 999998763 32 22
Q ss_pred eccc-----CCCeEEEEEcCCCCeEEEEEeC-----CCcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEc-CC
Q 003840 593 FMGH-----SASVMSLDFHPNKDDLICSCDG-----DGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-EN 659 (792)
Q Consensus 593 ~~~h-----~~~V~sl~fspd~~~ll~sgs~-----Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~-dg 659 (792)
+... ...+.++++++++..++.+.+. .+.|+.++ +++...... .....++|+++++.++++.. ++
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 2211 2358899999998744433221 24566666 455443322 34567899999988766654 68
Q ss_pred eEEEEECC--CC-e-----EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEE
Q 003840 660 VVSILDAE--TQ-A-----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 730 (792)
Q Consensus 660 ~I~i~D~~--t~-~-----~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~ 730 (792)
.|.+||+. ++ . ....+......+..++++++|+++++...+ .|.+||. ++ +.+..+......+.+++
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g---~~~~~i~~~~~~~~~~a 277 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPA 277 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEE
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC---CEEEEEECCCCCcEEEE
Confidence 99999985 55 2 233333344567889999999988777655 8999997 33 45556666666799999
Q ss_pred Ee-CCCCEEEEEEcCC
Q 003840 731 FH-PTYPSLLVIGCYQ 745 (792)
Q Consensus 731 fs-pdg~~L~sgs~dg 745 (792)
|. ++++.|++++..+
T Consensus 278 f~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 278 FIGPDASRLLVTSARE 293 (326)
T ss_dssp EESTTSCEEEEEEBCT
T ss_pred EecCCCCEEEEEecCC
Confidence 98 8988887766543
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.35 E-value=9.5e-10 Score=118.52 Aligned_cols=219 Identities=9% Similarity=0.041 Sum_probs=146.9
Q ss_pred CEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE
Q 003840 556 LITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 634 (792)
Q Consensus 556 ~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~ 634 (792)
...+++|++++. ++++...++.|.+||..+ +. +..+. ....|.+++|.+++. +++++ . ..|++||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~-~~-~~~~~-~~~~v~~i~~~~dg~-l~v~~-~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLAS-GR-KTVHA-LPFMGSALAKISDSK-QLIAS-D-DGLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTT-TE-EEEEE-CSSCEEEEEEEETTE-EEEEE-T-TEEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCC-Cc-EEEEE-CCCcceEEEEeCCCe-EEEEE-C-CCEEEEECCCCcEEE
Confidence 356788999754 566666788999999986 32 23332 356799999999976 44333 3 459999998887654
Q ss_pred EeeC-------CeeEEEEecCCCEEEEEEc------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC-C
Q 003840 635 VFKG-------GTAQMRFQPHLGRYLAAAA------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-D 700 (792)
Q Consensus 635 ~~~~-------~~~~v~~sp~~~~lla~s~------dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~-d 700 (792)
.... ....+++++++..+++... .+.|+.+| +++.... ..+......++|++++++|+.+.. +
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~-~~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL-FADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE-EEEESSEEEEEECTTSCEEEEEETTT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe-eCCCcccCCeEEcCCCCEEEEEECCC
Confidence 3321 2456889999876554432 25677777 4544332 223345678999999997766543 4
Q ss_pred -eEEEEECC--CC-CC--cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 003840 701 -SVRVWTVG--SG-SE--GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 773 (792)
Q Consensus 701 -~I~IwDl~--s~-~~--~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fs 773 (792)
.|.+||+. ++ .. ...+..+.........+++.++|.++++...++.|.+||.. ++.+ .+..+...+++++|+
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEEe
Confidence 89999986 43 21 12233333334567889999999877666667899999984 5544 555566679999998
Q ss_pred -CCCCEEEEEeC
Q 003840 774 -TETGYVASASH 784 (792)
Q Consensus 774 -pdg~~LaSgs~ 784 (792)
++++.|+.++.
T Consensus 280 g~d~~~L~vt~~ 291 (326)
T 2ghs_A 280 GPDASRLLVTSA 291 (326)
T ss_dssp STTSCEEEEEEB
T ss_pred cCCCCEEEEEec
Confidence 88887655543
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.34 E-value=1.9e-10 Score=122.59 Aligned_cols=234 Identities=8% Similarity=0.045 Sum_probs=156.5
Q ss_pred eeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEE
Q 003840 546 SKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 624 (792)
Q Consensus 546 ~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~i 624 (792)
.+..+..........+|+++++ ++++...++.|..|+.. +. +..+..+...+.++++.+++. ++++...++.|.+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~--g~-~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED--GT-VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITR 111 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT--SC-EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC--CC-EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEE
Confidence 3444555556678899999998 56677778899999984 22 455555677899999999986 5545555678999
Q ss_pred EEcCCCeeEEEee-------CCeeEEEEecCCCEEEE----EEc-------------CCeEEEEECCCCeEEEEecCCCC
Q 003840 625 WSINNGSCTRVFK-------GGTAQMRFQPHLGRYLA----AAA-------------ENVVSILDAETQACRLSLQGHTK 680 (792)
Q Consensus 625 wdl~~~~~~~~~~-------~~~~~v~~sp~~~~lla----~s~-------------dg~I~i~D~~t~~~~~~l~~h~~ 680 (792)
|+.. ++...... .....+++.+++..+++ +.. .+.|+.||..+++..... ...
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 9986 55332211 12456899998876664 221 257888888766544333 334
Q ss_pred CeEEEEEcCCCCEEEEEeC-------CeEEEEECCCCCCcceEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003840 681 PIDSVCWDPSGELLASVSE-------DSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 752 (792)
Q Consensus 681 ~V~sv~~spdg~~Las~s~-------d~I~IwDl~s~~~~~~i~~~-~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl 752 (792)
....++|+|+++.|+.+.. ..|++|++.... ......+ .........+++.++|+ |++++. +.|.+||.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~~~ 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVFDS 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEECT
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEECC
Confidence 5678999999997766544 379999986542 1111111 11233456789999998 555554 45999998
Q ss_pred CCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003840 753 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 790 (792)
Q Consensus 753 ~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I 790 (792)
.......+..+. .+.+++|+++++.|+.++.++..++
T Consensus 266 ~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 266 DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 544333444444 5899999999998888887765554
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.33 E-value=5.4e-10 Score=118.99 Aligned_cols=232 Identities=13% Similarity=0.133 Sum_probs=158.6
Q ss_pred eeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003840 507 SVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 585 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s 585 (792)
.+..+.......+|+++|+ +++++..++.|..|+. +++ ...+..+...+..++|+++|+++++...++.|.+|+.+
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 3444555678899999998 5667777899999998 444 45556677789999999999877666666889999986
Q ss_pred CCceeEEecc-----cCCCeEEEEEcCCCCeEEEE----EeC-------------CCcEEEEEcCCCeeEEEe-eCCeeE
Q 003840 586 PGYSLRTFMG-----HSASVMSLDFHPNKDDLICS----CDG-------------DGEIRYWSINNGSCTRVF-KGGTAQ 642 (792)
Q Consensus 586 ~~~~i~~~~~-----h~~~V~sl~fspd~~~ll~s----gs~-------------Dg~I~iwdl~~~~~~~~~-~~~~~~ 642 (792)
+.. ..+.. ....+.++++.++|. ++++ |.. .+.|+.||..+++..... ......
T Consensus 116 -g~~-~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~g 192 (305)
T 3dr2_A 116 -GQA-HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNG 192 (305)
T ss_dssp -SCE-EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEE
T ss_pred -CCE-EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcc
Confidence 222 22211 123467899999986 4444 221 256888887666654332 233466
Q ss_pred EEEecCCCEEEEEEcC------CeEEEEECCCCeEE--EEe-cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCc
Q 003840 643 MRFQPHLGRYLAAAAE------NVVSILDAETQACR--LSL-QGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG 713 (792)
Q Consensus 643 v~~sp~~~~lla~s~d------g~I~i~D~~t~~~~--~~l-~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~ 713 (792)
++|+++++.++++... +.|.+||+...... ..+ .........++++++|+++++. .+.|.+|+.. +
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~-g--- 267 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD-G--- 267 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECTT-S---
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECCC-C---
Confidence 8999999988887765 78999998765311 111 1123445678999999955544 5589999974 3
Q ss_pred ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003840 714 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 751 (792)
Q Consensus 714 ~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwD 751 (792)
+.+..+.... .+.+++|.++++.|++++.+ .|+.++
T Consensus 268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~-~l~~~~ 303 (305)
T 3dr2_A 268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGP-CLWMLP 303 (305)
T ss_dssp CEEEEEECSS-CCCEEEECTTSCEEEEEETT-EEEEEE
T ss_pred CEEEEEECCC-ceeEEEEeCCCCEEEEEcCC-eEEEEE
Confidence 4455555444 58889999999989888875 444444
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.32 E-value=3.1e-11 Score=132.29 Aligned_cols=245 Identities=9% Similarity=-0.007 Sum_probs=163.0
Q ss_pred eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe----------CCCcEEEEeCCCCCceeEEeccc-------C
Q 003840 535 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNPGYSLRTFMGH-------S 597 (792)
Q Consensus 535 ~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----------~Dg~V~IWdl~s~~~~i~~~~~h-------~ 597 (792)
.|.++|.++++.+.++.....+ .+.|+||+++|+++. .++.|.+||+.+ .+.+.++... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEECCCccccccC
Confidence 8889999999999999866666 799999999998886 368899999998 6667766533 1
Q ss_pred CCeEEEEEcCCCCeEEEEEeC-CCcEEE--EEcCCCeeEEEeeCCeeEEEEecCCC-EEEEEEcCCeEEEEECCC-----
Q 003840 598 ASVMSLDFHPNKDDLICSCDG-DGEIRY--WSINNGSCTRVFKGGTAQMRFQPHLG-RYLAAAAENVVSILDAET----- 668 (792)
Q Consensus 598 ~~V~sl~fspd~~~ll~sgs~-Dg~I~i--wdl~~~~~~~~~~~~~~~v~~sp~~~-~lla~s~dg~I~i~D~~t----- 668 (792)
.....+.|+||+++++++... +..|.+ +|+.+ +..+..+. ++.+.|+++ .+++.+.|+.+.+.|+++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-CFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-CCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-ceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 235689999999988766544 467888 99877 44443211 122334443 445566788888899887
Q ss_pred CeEEEE----ecCCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeecC-------C---CceEEEEEeC
Q 003840 669 QACRLS----LQGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN-------G---NKFHSCVFHP 733 (792)
Q Consensus 669 ~~~~~~----l~~h~~~V~sv~~spdg~-~Las~s~d~I~IwDl~s~~~~~~i~~~~~~-------~---~~i~si~fsp 733 (792)
++.... +.....+. . .+++. ++++.. +.|.+.|+..... ..+..+... . .....++|++
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~ 273 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEEcC
Confidence 443211 11122333 3 45444 444444 8888899864311 222222111 0 1112268999
Q ss_pred CCCEEEEEEc-C--------CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-CCCcEEEeC
Q 003840 734 TYPSLLVIGC-Y--------QSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 792 (792)
Q Consensus 734 dg~~L~sgs~-d--------g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~-~LaSgs-~DG~I~IWd 792 (792)
++++++++.. . +.+.+||+.+++.+....-.....+|+|++|++ +++++. .++.|.+||
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 9999988654 2 367799999999884333333688999999998 566666 589999986
No 222
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.31 E-value=8.8e-10 Score=120.67 Aligned_cols=253 Identities=12% Similarity=0.039 Sum_probs=165.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCe--
Q 003840 523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-- 600 (792)
Q Consensus 523 dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V-- 600 (792)
++..|++++.++.|+.+|.++++.+..+............ .+..+++++.++.|..+|..+ ++.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~t-G~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEAD-GAVKWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTT-CCEEEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCC-CcEEEEEeCCCCceee
Confidence 4557888889999999999999988776644322212222 245888889999999999987 55554443222111
Q ss_pred ---EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeE----------E--EEecCCCEEEEEEcCCeEEEEE
Q 003840 601 ---MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ----------M--RFQPHLGRYLAAAAENVVSILD 665 (792)
Q Consensus 601 ---~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~----------v--~~sp~~~~lla~s~dg~I~i~D 665 (792)
....+. +. .++.+..++.|..+|..+++.+..+...... + .....++.+++++.++.|..+|
T Consensus 179 ~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 179 RGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred cCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 122222 23 4557788999999999999988766532100 0 0111357888888899999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEc
Q 003840 666 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGC 743 (792)
Q Consensus 666 ~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~ 743 (792)
.++++.+..... .....+.. ++..|+.++.+ .|..||..++ +.+..... ....+....+ .+..|++++.
T Consensus 256 ~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~ 326 (376)
T 3q7m_A 256 LRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGG---VTLWTQSDLLHRLLTSPVL--YNGNLVVGDS 326 (376)
T ss_dssp TTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTC---CEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred CCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCC---cEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence 999998877653 23444444 35566666666 9999999887 44444431 1222223333 3567999999
Q ss_pred CCeEEEEECCCCcEEE-EcccCCCeEE-EEEeCCCCEEEEEeCCCcEEEeC
Q 003840 744 YQSLELWNMSENKTMT-LTAHEGLIAA-LAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 744 dg~I~IwDl~~~~~~~-~~~h~~~V~s-l~fspdg~~LaSgs~DG~I~IWd 792 (792)
+|.|++||..+++.+. .......+.+ .... +..|+.++.||.|+.||
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence 9999999999999873 3332333322 2222 45778889999999885
No 223
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.29 E-value=2.5e-14 Score=157.66 Aligned_cols=223 Identities=12% Similarity=0.024 Sum_probs=121.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCC-CeE
Q 003840 523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA-SVM 601 (792)
Q Consensus 523 dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~-~V~ 601 (792)
++.+|++++.||.|+.||..+|+.+..+.. ..+.+..+..++..+++++.||.|+.||..+ ++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC-CceeeeeeccCccccc
Confidence 567999999999999999999999988876 4555666667787888889999999999987 444444432211 110
Q ss_pred -EEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCC
Q 003840 602 -SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK 680 (792)
Q Consensus 602 -sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~ 680 (792)
+..+. .+ ..+++++.|+.|+.||.++|+.+..+..+. ...++|+++.+++++.++.|+.||.++++.+..+..+.
T Consensus 85 ~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~- 160 (369)
T 2hz6_A 85 ASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF-ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD- 160 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred cCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCCC-cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence 01111 22 245577889999999999999887765432 34566788889999999999999999998765554211
Q ss_pred CeEEEEEcCCC---CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE--EEcCCeEEEEECCC
Q 003840 681 PIDSVCWDPSG---ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV--IGCYQSLELWNMSE 754 (792)
Q Consensus 681 ~V~sv~~spdg---~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s--gs~dg~I~IwDl~~ 754 (792)
....+++.+. ..+++++.+ .|+.||..++ +.+..+......+...+++.++...+. ...++.++++|..+
T Consensus 161 -~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~t 236 (369)
T 2hz6_A 161 -YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMS 236 (369)
T ss_dssp -ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHH
T ss_pred -ccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEecCCCceEEEEEecCCceEeccceeecccceeeeehhc
Confidence 1222333331 345556666 9999999887 455554433333333445556543210 01133455566554
Q ss_pred Cc
Q 003840 755 NK 756 (792)
Q Consensus 755 ~~ 756 (792)
++
T Consensus 237 G~ 238 (369)
T 2hz6_A 237 GE 238 (369)
T ss_dssp HH
T ss_pred CC
Confidence 44
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.26 E-value=7.9e-10 Score=131.29 Aligned_cols=261 Identities=13% Similarity=0.128 Sum_probs=178.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEeccCCCC-----------EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003840 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-----------ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 592 (792)
Q Consensus 524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~-----------V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~ 592 (792)
+..|++++.++.|+.+|..+|+.+-++...... ...+++ ++..|++++.|+.|+.+|..+ ++.+..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~t-G~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAAT-GKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTT-CCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCC-CCEEee
Confidence 457777888899999999999998877643210 112233 456888999999999999998 555555
Q ss_pred eccc-C----CCeEE-EEEcCCCCeEEEEEe-----CCCcEEEEEcCCCeeEEEeeCCe---------------------
Q 003840 593 FMGH-S----ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGGT--------------------- 640 (792)
Q Consensus 593 ~~~h-~----~~V~s-l~fspd~~~ll~sgs-----~Dg~I~iwdl~~~~~~~~~~~~~--------------------- 640 (792)
+..+ . ..+.+ ..+. +..+++.++ .++.|+.||.++++.+..+....
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred ecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 5433 1 11211 1111 234443332 27999999999999887764311
Q ss_pred --------------eEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEecC--CC------
Q 003840 641 --------------AQMRFQPHLGRYLAAAAEN-------------------VVSILDAETQACRLSLQG--HT------ 679 (792)
Q Consensus 641 --------------~~v~~sp~~~~lla~s~dg-------------------~I~i~D~~t~~~~~~l~~--h~------ 679 (792)
..+.++++++.++++..++ .|..+|.++++.+..+.. |.
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 2367888989988887664 599999999999887764 32
Q ss_pred -CCeEEEEEcCCC---CEEEEEeCC-eEEEEECCCCCCcceEEEeecC-----------CCce-----------------
Q 003840 680 -KPIDSVCWDPSG---ELLASVSED-SVRVWTVGSGSEGECVHELSCN-----------GNKF----------------- 726 (792)
Q Consensus 680 -~~V~sv~~spdg---~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~-----------~~~i----------------- 726 (792)
.....+....+| .+|+.++.+ .|+++|..+++ .+..+... ...+
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK---FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC---EeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 112223333467 577888877 99999998884 33332211 0111
Q ss_pred -------EEEEEeCCCCEEEEEEcC-------------------------------------------CeEEEEECCCCc
Q 003840 727 -------HSCVFHPTYPSLLVIGCY-------------------------------------------QSLELWNMSENK 756 (792)
Q Consensus 727 -------~si~fspdg~~L~sgs~d-------------------------------------------g~I~IwDl~~~~ 756 (792)
..++|+|+...+++...+ +.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 256889998888876432 689999999999
Q ss_pred EEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 757 TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 757 ~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.+....+...+.+..+..++.++++++.||.|++||
T Consensus 469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 885555555666666777888999999999999986
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.25 E-value=5.3e-10 Score=133.04 Aligned_cols=263 Identities=11% Similarity=0.105 Sum_probs=173.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEeccCCCC----------E-EEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003840 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----------I-TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 592 (792)
Q Consensus 524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~----------V-~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~ 592 (792)
+..|++++.++.|+.+|..+|+.+-.+...... + ..+.+ ++..|++++.|+.|+.||..+ ++.+..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~T-G~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKT-GQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT-CCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCC-CCEeee
Confidence 557788888999999999999998887643221 0 11222 356888999999999999998 555544
Q ss_pred eccc--CCCeEEEEEcC--CCCeEEEEEe-----CCCcEEEEEcCCCeeEEEeeCC------------------------
Q 003840 593 FMGH--SASVMSLDFHP--NKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGG------------------------ 639 (792)
Q Consensus 593 ~~~h--~~~V~sl~fsp--d~~~ll~sgs-----~Dg~I~iwdl~~~~~~~~~~~~------------------------ 639 (792)
+... ......+...| .+..+++.++ .+|.|+.||.++++.+..+...
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred ecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 4321 11111111111 1233443322 3789999999999988776421
Q ss_pred ----------eeEEEEecCCCEEEEEEcCCe-------------------EEEEECCCCeEEEEecC--CC-------CC
Q 003840 640 ----------TAQMRFQPHLGRYLAAAAENV-------------------VSILDAETQACRLSLQG--HT-------KP 681 (792)
Q Consensus 640 ----------~~~v~~sp~~~~lla~s~dg~-------------------I~i~D~~t~~~~~~l~~--h~-------~~ 681 (792)
-..+.+.++.+.++++..++. |..||.++++.+..+.. |. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 014678888899998887763 99999999999988764 32 12
Q ss_pred eEEEEEcCCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeecCC----------------------------------
Q 003840 682 IDSVCWDPSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG---------------------------------- 723 (792)
Q Consensus 682 V~sv~~spdg~---~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~---------------------------------- 723 (792)
+.......+|+ +|+.++.+ .++++|.++++. +.......
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p 383 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL---LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTP 383 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESS
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE---eccccccccccccccCccCCCcccchhhccccCCCCeeEeCC
Confidence 22222223565 67777777 999999988843 21111000
Q ss_pred -----CceEEEEEeCCCCEEEEEEc---------------------------------------------CCeEEEEECC
Q 003840 724 -----NKFHSCVFHPTYPSLLVIGC---------------------------------------------YQSLELWNMS 753 (792)
Q Consensus 724 -----~~i~si~fspdg~~L~sgs~---------------------------------------------dg~I~IwDl~ 753 (792)
.....++|+|+...|++... +|.|+.||+.
T Consensus 384 ~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~ 463 (689)
T 1yiq_A 384 AFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV 463 (689)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT
T ss_pred CcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC
Confidence 01123688998888877632 3679999999
Q ss_pred CCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 754 ENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 754 ~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+++.+....+...+....+...+.+|++++.||.|+.||
T Consensus 464 tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 464 KQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp TTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEE
Confidence 999884444444444446667788999999999999986
No 226
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.24 E-value=3.5e-09 Score=116.44 Aligned_cols=179 Identities=9% Similarity=0.050 Sum_probs=131.7
Q ss_pred CcceEEEEeCCCeeeecCCC--eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 429 SKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 429 ~k~~l~~s~Dg~~~~ss~s~--~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...++.++++...+++++.+ .+|++++..- .+.. ..+ . +....
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~--~~~~--~~~-----------------------------~--~~~~~ 83 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRD--HITS--DST-----------------------------P--LTFKW 83 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHH--HHHS--SSC-----------------------------C--CCCSE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhh--hhcc--ccc-----------------------------c--ccceE
Confidence 35689999999988887766 6687654431 1110 000 0 11111
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
...+.+ |++++| |+++|+++ .++.|++||+.+......+..|...|.++.+.+.. |++++.||.|.+||+.+.
T Consensus 84 -~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~ 156 (388)
T 1xip_A 84 -EKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTK 156 (388)
T ss_dssp -EEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTC
T ss_pred -EeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCC
Confidence 123556 999999 99999999 88999999999887777777888889999888653 888999999999999863
Q ss_pred CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee--EEEe------------eCCeeEEEEecCCCEE
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--TRVF------------KGGTAQMRFQPHLGRY 652 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~--~~~~------------~~~~~~v~~sp~~~~l 652 (792)
. ... +...|+|++|+|+| ++.|..||.|++|+...+.+ .+.+ ...+..+.|.+++.++
T Consensus 157 ~-~~~----~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~fl 228 (388)
T 1xip_A 157 S-TKQ----LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFL 228 (388)
T ss_dssp C-EEE----EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEE
T ss_pred c-ccc----ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEE
Confidence 3 322 45689999999998 45788899999999988886 5455 2346779999987777
Q ss_pred EEEEc
Q 003840 653 LAAAA 657 (792)
Q Consensus 653 la~s~ 657 (792)
++-..
T Consensus 229 v~y~~ 233 (388)
T 1xip_A 229 AVFGN 233 (388)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 66443
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.24 E-value=1.3e-09 Score=119.32 Aligned_cols=255 Identities=9% Similarity=0.086 Sum_probs=162.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEeccC---------CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec
Q 003840 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEH---------SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 594 (792)
Q Consensus 524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h---------~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~ 594 (792)
+..|++++.++.|+.||.++++.+..+... ...+.+.. ..++..|++++.++.|+.+|..+ ++.+..+.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSD-GTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTT-CCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCC-CCEEEEEe
Confidence 557888888999999999999988766542 22232221 12456888899999999999988 45444444
Q ss_pred ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEE------EEecCCCEEEEEEcCCeEEEEECCC
Q 003840 595 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM------RFQPHLGRYLAAAAENVVSILDAET 668 (792)
Q Consensus 595 ~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v------~~sp~~~~lla~s~dg~I~i~D~~t 668 (792)
..........+. + . .++.++.++.|..+|..+++.+..+....... .....++.+++++.++.|..+|.++
T Consensus 131 ~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~t 207 (376)
T 3q7m_A 131 VAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQ 207 (376)
T ss_dssp CSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTT
T ss_pred CCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCC
Confidence 332222222222 2 3 45578889999999999999887765432111 1111256788888899999999999
Q ss_pred CeEEEEecCCCCC----eE---EEEEcC--CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003840 669 QACRLSLQGHTKP----ID---SVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 738 (792)
Q Consensus 669 ~~~~~~l~~h~~~----V~---sv~~sp--dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L 738 (792)
++.+..+...... +. .+...| .+..++.++.+ .|..+|..++ +.+..... .....+.. ++..|
T Consensus 208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG---~~~w~~~~--~~~~~~~~--~~~~l 280 (376)
T 3q7m_A 208 GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG---QIMWKREL--GSVNDFIV--DGNRI 280 (376)
T ss_dssp CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC---CEEEEECC--CCEEEEEE--ETTEE
T ss_pred CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC---cEEeeccC--CCCCCceE--ECCEE
Confidence 9988776532110 00 000111 24556666666 9999999887 34443332 23334443 46678
Q ss_pred EEEEcCCeEEEEECCCCcEEEEcc--cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 739 LVIGCYQSLELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 739 ~sgs~dg~I~IwDl~~~~~~~~~~--h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
++++.++.|..||..+++.+.... ....+....+. +..|+.++.+|.|++||
T Consensus 281 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 281 YLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp EEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence 999999999999999998873322 22233333332 45777888888888775
No 228
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.21 E-value=2.9e-08 Score=103.19 Aligned_cols=245 Identities=9% Similarity=0.010 Sum_probs=158.6
Q ss_pred CEEEEEeCCCeEEEEECCCCcee-----EEeccCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCCCceeEEecccCC
Q 003840 525 KLLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSA 598 (792)
Q Consensus 525 ~~Lasgs~Dg~I~vWdl~t~~~~-----~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~V~IWdl~s~~~~i~~~~~h~~ 598 (792)
.+|+.+.. +.|+.++++..... ..+......+..++|++++..|+.+ ..++.|.+++++. ......+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCC-CCcEEEEECCCC
Confidence 35555543 47888888754321 1222223457899999976655554 4578899999975 333233322335
Q ss_pred CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEE
Q 003840 599 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACR 672 (792)
Q Consensus 599 ~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~d---g~I~i~D~~t~~~~ 672 (792)
....|++.+++..++++....+.|.++++.......... .....+++++++++++++... +.|..++.......
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 688999999877788777778899999987543322222 345678999988888777653 68888887654322
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEE
Q 003840 673 LSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLEL 749 (792)
Q Consensus 673 ~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-dg~I~I 749 (792)
............+++++++.+|+.+... .|.++|+... .....+. .......+++. +..|+++.. .+.|.+
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEE
Confidence 2222233457889999988777666554 8999998643 1122222 23344566654 566776665 479999
Q ss_pred EECCCCcEEE-EcccC-CCeEEEEEeCCCC
Q 003840 750 WNMSENKTMT-LTAHE-GLIAALAVSTETG 777 (792)
Q Consensus 750 wDl~~~~~~~-~~~h~-~~V~sl~fspdg~ 777 (792)
+|..+++.+. +.... ....++++.|++.
T Consensus 234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEEccccccccceeeecCccC
Confidence 9999988773 33222 2477888888764
No 229
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.20 E-value=5.6e-10 Score=119.10 Aligned_cols=259 Identities=11% Similarity=0.045 Sum_probs=168.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003840 511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 590 (792)
Q Consensus 511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i 590 (792)
+...+.++.+..+|. |++++.+ |..||. +++.+..+......+....+. +..|++++.++.|..||.. +...
T Consensus 58 ~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~--g~~~ 129 (330)
T 3hxj_A 58 GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD--GTEK 129 (330)
T ss_dssp GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT--SCEE
T ss_pred CCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC--CCEE
Confidence 344567778877775 4445444 888886 565554444333323333333 5578888889999999987 3444
Q ss_pred EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003840 591 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAE 667 (792)
Q Consensus 591 ~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I~i~D~~ 667 (792)
..+......+.++.+.+++. ++.++.++.|..||.. ++.+..+.. .+..+.+..++ .+++++ +.|..|| .
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-~l~v~t--~~l~~~d-~ 202 (330)
T 3hxj_A 130 WRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-TIYFGS--DKVYAIN-P 202 (330)
T ss_dssp EEEECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-CEEEES--SSEEEEC-T
T ss_pred EEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-EEEEEe--CEEEEEC-C
Confidence 44444555566777776654 4467778999999998 776665542 23344554554 455555 8899999 7
Q ss_pred CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003840 668 TQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 747 (792)
Q Consensus 668 t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I 747 (792)
+++.+..+......+.+++++++|.+++....+.|..+|. ++ ..+..+......+..+.+.+++ .|++++.++.|
T Consensus 203 ~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl 277 (330)
T 3hxj_A 203 DGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHL 277 (330)
T ss_dssp TSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEE
T ss_pred CCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CEeEEeeCCCCccccceEcCCC-eEEEecCCCCE
Confidence 7777777776667788899988887666554458888874 33 3444444433334445555555 57788888899
Q ss_pred EEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 748 ELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 748 ~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
..||. +++.+ .+......+.++....++.+ ..++.+|.|++.
T Consensus 278 ~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~~ 320 (330)
T 3hxj_A 278 YAINP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNGKFYAL 320 (330)
T ss_dssp EEECT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTSCEEEE
T ss_pred EEECC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCCeEEEE
Confidence 99996 55554 44445566778888788765 457889998874
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.19 E-value=8.2e-09 Score=114.11 Aligned_cols=217 Identities=10% Similarity=-0.001 Sum_probs=147.9
Q ss_pred CCCCeEEE-EeCCCcEEEEeCCCCC---ceeEEec------c-cCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEE
Q 003840 564 PSMPRLAT-SSFDKTVRVWDADNPG---YSLRTFM------G-HSASVMSLDFHPNKDDLICSCDGD------GEIRYWS 626 (792)
Q Consensus 564 pdg~~Las-gs~Dg~V~IWdl~s~~---~~i~~~~------~-h~~~V~sl~fspd~~~ll~sgs~D------g~I~iwd 626 (792)
.++++|++ +-.+++|+|+|+.+.. +.++++. . ....-..+...|++ +++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 77777655 5567889999997532 3444442 1 11234567788998 55565555 7899999
Q ss_pred cCCCeeEEEeeCC------eeEEEEecCCCEEEEEE-------------------cCCeEEEEECCCCeEEEEecCCC--
Q 003840 627 INNGSCTRVFKGG------TAQMRFQPHLGRYLAAA-------------------AENVVSILDAETQACRLSLQGHT-- 679 (792)
Q Consensus 627 l~~~~~~~~~~~~------~~~v~~sp~~~~lla~s-------------------~dg~I~i~D~~t~~~~~~l~~h~-- 679 (792)
.++++.+..+... ...+.|+|+++.+++.. .+..|.+||+.+++.+.++....
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 9999999888632 23478899999777774 36899999999998888776531
Q ss_pred CCeEEEEE--cCCCCEEEEEeC-----C--eEEEEECCCCCCcceEEEe--ec----------------CCCceEEEEEe
Q 003840 680 KPIDSVCW--DPSGELLASVSE-----D--SVRVWTVGSGSEGECVHEL--SC----------------NGNKFHSCVFH 732 (792)
Q Consensus 680 ~~V~sv~~--spdg~~Las~s~-----d--~I~IwDl~s~~~~~~i~~~--~~----------------~~~~i~si~fs 732 (792)
.....|.| +|++++++++++ . +|.+|....+ .......+ .. .......|.++
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 23445555 999998887775 3 7777666542 22222221 11 02457789999
Q ss_pred CCCCEEEEEEcC-CeEEEEECCCC---cEEEEcccC---------------CCeEEEEEeCCCCEEEEEe
Q 003840 733 PTYPSLLVIGCY-QSLELWNMSEN---KTMTLTAHE---------------GLIAALAVSTETGYVASAS 783 (792)
Q Consensus 733 pdg~~L~sgs~d-g~I~IwDl~~~---~~~~~~~h~---------------~~V~sl~fspdg~~LaSgs 783 (792)
+|+++|+++... +.|.+||+... +.+....-. +....+++++||++|+++.
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999998874 69999998632 333211111 1357899999999999887
No 231
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.18 E-value=1.2e-09 Score=130.22 Aligned_cols=232 Identities=12% Similarity=0.110 Sum_probs=153.0
Q ss_pred CCCCEEEEEECCCCCeEEEEe-----CCCcEEEEeCCCCCceeE-EecccCCCeEEEEEcCCCCeEEEEEeCC-------
Q 003840 553 HSSLITDVRFSPSMPRLATSS-----FDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD------- 619 (792)
Q Consensus 553 h~~~V~~i~fspdg~~Lasgs-----~Dg~V~IWdl~s~~~~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~D------- 619 (792)
|...+..++|+|||++||.+. .+..|+|||+.++ ..+. .+... ....++|+ |++.++++...+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg-~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESK-QPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTC-SEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCC-CCCccccCCc--eeccEEEe-CCCEEEEEEecCccccccc
Confidence 556788999999999888543 2357999999984 4333 22211 13568899 988877665432
Q ss_pred -----CcEEEEEcCCCee--EEEee--C----CeeEEEEecCCCEEEEEEc----CCeEEEEECCCCe-EEEEecCCCCC
Q 003840 620 -----GEIRYWSINNGSC--TRVFK--G----GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQA-CRLSLQGHTKP 681 (792)
Q Consensus 620 -----g~I~iwdl~~~~~--~~~~~--~----~~~~v~~sp~~~~lla~s~----dg~I~i~D~~t~~-~~~~l~~h~~~ 681 (792)
..|++|++.+... ...+. . ....+.|++++.++++... ++.|+++|+.++. ....+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 2499999987642 22332 2 2356889999998876654 2589999998763 34445555555
Q ss_pred eEEEEEcCCCCEEEEEe-CC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECC
Q 003840 682 IDSVCWDPSGELLASVS-ED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMS 753 (792)
Q Consensus 682 V~sv~~spdg~~Las~s-~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---~I~IwDl~ 753 (792)
+... |+++|..|+..+ .+ .|.+||+.++... ....+..+...+. .|++++++|++...++ .|++||+.
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 5555 667676555444 22 6899999876331 1233444544554 8999999888776654 79999998
Q ss_pred CCcEEEEc-ccCCCeEEEEEeCCCCEEEEEeCC----CcEEEeC
Q 003840 754 ENKTMTLT-AHEGLIAALAVSTETGYVASASHD----KFVKLWK 792 (792)
Q Consensus 754 ~~~~~~~~-~h~~~V~sl~fspdg~~LaSgs~D----G~I~IWd 792 (792)
++....+. ...+.+..+.++++++.|+....+ +.|+.||
T Consensus 359 g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 359 GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 76655443 345567788888888766655444 6777765
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.18 E-value=7.8e-09 Score=114.29 Aligned_cols=221 Identities=10% Similarity=0.047 Sum_probs=155.2
Q ss_pred EEc--CCCCEEEEE-eCCCeEEEEECCCC----ceeEEec------c-CCCCEEEEEECCCCCeEEEEeCC------CcE
Q 003840 519 HFS--SDGKLLATG-GHDKKAVLWHTDTL----KSKTNLE------E-HSSLITDVRFSPSMPRLATSSFD------KTV 578 (792)
Q Consensus 519 afs--pdg~~Lasg-s~Dg~I~vWdl~t~----~~~~~l~------~-h~~~V~~i~fspdg~~Lasgs~D------g~V 578 (792)
.++ .++++|++. ..++.|+|+|+.+. +..++++ . ....-..+...|+| +++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 446 788877765 46788999999755 6666663 1 11245667889999 77776555 789
Q ss_pred EEEeCCCCCceeEEecccC---CCeEEEEEcCCCCeEEEEEe-------------------CCCcEEEEEcCCCeeEEEe
Q 003840 579 RVWDADNPGYSLRTFMGHS---ASVMSLDFHPNKDDLICSCD-------------------GDGEIRYWSINNGSCTRVF 636 (792)
Q Consensus 579 ~IWdl~s~~~~i~~~~~h~---~~V~sl~fspd~~~ll~sgs-------------------~Dg~I~iwdl~~~~~~~~~ 636 (792)
.++|..+ .+.+.++.... ..-..+.|+|+++.++ +.. .+..|.+||+.+++.+..+
T Consensus 167 ~vlD~~T-~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 167 LMLDHYS-FEPLGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEECTTT-CCEEEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred EEEECCC-CeEEEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 9999997 66777775322 2244688899988555 443 3789999999999888877
Q ss_pred eCC-----eeEEEE--ecCCCEEEEEEc------CCeEEEEECCCCeE--EEE--ecCC----------------CCCeE
Q 003840 637 KGG-----TAQMRF--QPHLGRYLAAAA------ENVVSILDAETQAC--RLS--LQGH----------------TKPID 683 (792)
Q Consensus 637 ~~~-----~~~v~~--sp~~~~lla~s~------dg~I~i~D~~t~~~--~~~--l~~h----------------~~~V~ 683 (792)
..+ ...++| +|+++++++++. ++.|.+|..+.++. +.. +... .....
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 653 233555 999999888775 45787766544421 111 1110 23467
Q ss_pred EEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCC--------------ceEEEEEeCCCCEEEEEE
Q 003840 684 SVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGN--------------KFHSCVFHPTYPSLLVIG 742 (792)
Q Consensus 684 sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~--------------~i~si~fspdg~~L~sgs 742 (792)
.|.+++||++|+++..+ .|.+||+......+.+..+...+. ....+.++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 89999999999988876 999999975545566666654321 368899999999999998
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.15 E-value=3.1e-09 Score=126.19 Aligned_cols=251 Identities=11% Similarity=0.093 Sum_probs=166.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEeccC-C----CCEEE-EEECCCCCeEEEEeC------CCcEEEEeCCCCCcee
Q 003840 523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEH-S----SLITD-VRFSPSMPRLATSSF------DKTVRVWDADNPGYSL 590 (792)
Q Consensus 523 dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h-~----~~V~~-i~fspdg~~Lasgs~------Dg~V~IWdl~s~~~~i 590 (792)
++..|++++.|+.|+.+|..+|+.+..+..+ . ..+.+ ... .+..+++++. +|.|+.||..+ ++.+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~t-G~~~ 203 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAET-GERK 203 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTT-CCEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCC-CcEE
Confidence 3558888899999999999999998887754 1 11211 111 2345555553 78999999998 5555
Q ss_pred EEecccCC--------------------------------CeEEEEEcCCCCeEEEEEeCCC------------------
Q 003840 591 RTFMGHSA--------------------------------SVMSLDFHPNKDDLICSCDGDG------------------ 620 (792)
Q Consensus 591 ~~~~~h~~--------------------------------~V~sl~fspd~~~ll~sgs~Dg------------------ 620 (792)
..+..... ....+++.++++.++ .+..++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy-~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMY-VGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEE-EECCCCccccCCCCCccCCCCeee
Confidence 44432111 113567888866444 555443
Q ss_pred -cEEEEEcCCCeeEEEeeCC------------eeEEEEecCC---CEEEEEEcCCeEEEEECCCCeEEEEecCCCC----
Q 003840 621 -EIRYWSINNGSCTRVFKGG------------TAQMRFQPHL---GRYLAAAAENVVSILDAETQACRLSLQGHTK---- 680 (792)
Q Consensus 621 -~I~iwdl~~~~~~~~~~~~------------~~~v~~sp~~---~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~---- 680 (792)
.|..+|.++++.+..+... ...+....++ ..+++++.+|.|+++|.++++.+..+.....
T Consensus 283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 5999999999998876531 1112233355 5677888899999999999999877653211
Q ss_pred -------Ce------------------------EEEEEcCCCCEEEEEeC------------------------------
Q 003840 681 -------PI------------------------DSVCWDPSGELLASVSE------------------------------ 699 (792)
Q Consensus 681 -------~V------------------------~sv~~spdg~~Las~s~------------------------------ 699 (792)
++ ..++|+|++.+|++...
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 01 14688998887776432
Q ss_pred --------------CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc-cc
Q 003840 700 --------------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-AH 763 (792)
Q Consensus 700 --------------d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~-~h 763 (792)
+.|..||+.++ +.+..+.. ...+....+..++..+++++.++.|++||..+++++ .+. .+
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccccccccCCCCCccEEEEEeCCCC---cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 36888999887 45554443 233445567778888999999999999999999988 333 33
Q ss_pred CCCeEEEEEeCCCCEEEE
Q 003840 764 EGLIAALAVSTETGYVAS 781 (792)
Q Consensus 764 ~~~V~sl~fspdg~~LaS 781 (792)
.....-+.|..+|+.+++
T Consensus 519 ~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 519 GVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CCCSCCEEEEETTEEEEE
T ss_pred CcccCCEEEEeCCEEEEE
Confidence 333445666778875443
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.15 E-value=6.9e-09 Score=123.43 Aligned_cols=252 Identities=11% Similarity=0.103 Sum_probs=162.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEeccC--CCCEEEEEECC---CCCeEEEEe------CCCcEEEEeCCCCCceeEE
Q 003840 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSP---SMPRLATSS------FDKTVRVWDADNPGYSLRT 592 (792)
Q Consensus 524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h--~~~V~~i~fsp---dg~~Lasgs------~Dg~V~IWdl~s~~~~i~~ 592 (792)
+..|++++.|+.|+.||.++|+.+-.+... ......+..+| ++ .+++++ .+|.|+.||..+ ++.+..
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~ 198 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAET-GKEAWR 198 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTT-CCEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCC-CcEEEE
Confidence 457888999999999999999988776542 11111111222 44 445543 378999999998 554444
Q ss_pred eccc-------------------------------CCCeEEEEEcCCCCeEEEEEeCCC-------------------cE
Q 003840 593 FMGH-------------------------------SASVMSLDFHPNKDDLICSCDGDG-------------------EI 622 (792)
Q Consensus 593 ~~~h-------------------------------~~~V~sl~fspd~~~ll~sgs~Dg-------------------~I 622 (792)
+... ......+++.++++ +++.+..++ .|
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 3310 01112577888765 555676665 39
Q ss_pred EEEEcCCCeeEEEeeCC------------eeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEecCCC-CC-----
Q 003840 623 RYWSINNGSCTRVFKGG------------TAQMRFQPHLG---RYLAAAAENVVSILDAETQACRLSLQGHT-KP----- 681 (792)
Q Consensus 623 ~iwdl~~~~~~~~~~~~------------~~~v~~sp~~~---~lla~s~dg~I~i~D~~t~~~~~~l~~h~-~~----- 681 (792)
..||.++++.+..+... .....+..++. .+++++.+|.|+++|.++++.+....... .+
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 99999999998877531 01112222443 57777889999999999999875432211 00
Q ss_pred ---------------------------------eEEEEEcCCCCEEEEEeC-----------------------------
Q 003840 682 ---------------------------------IDSVCWDPSGELLASVSE----------------------------- 699 (792)
Q Consensus 682 ---------------------------------V~sv~~spdg~~Las~s~----------------------------- 699 (792)
-..++|+|+..+|++...
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 112688888887776521
Q ss_pred -----------------CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc
Q 003840 700 -----------------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT 761 (792)
Q Consensus 700 -----------------d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~ 761 (792)
+.|+.||+.++ +.+..+..+. .+....+...+..+++++.|+.|++||.++++.+ .+.
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 25888999887 5555554433 2333456667889999999999999999999988 443
Q ss_pred c-cCCCeEEEEEeCCCCE-EEEE
Q 003840 762 A-HEGLIAALAVSTETGY-VASA 782 (792)
Q Consensus 762 ~-h~~~V~sl~fspdg~~-LaSg 782 (792)
. +.....-+.|..+|+. |++.
T Consensus 514 ~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 514 AASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp CSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCCcccCceEEEECCEEEEEEE
Confidence 3 3323345677788874 4443
No 235
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.11 E-value=1.4e-09 Score=117.89 Aligned_cols=218 Identities=10% Similarity=0.037 Sum_probs=148.5
Q ss_pred CCEEEEEECCCCCeEEEEe--CCCcEEEEeCCCCCceeEEec-------ccCCCeEEEEEcCCCCeEEEEEeC-----CC
Q 003840 555 SLITDVRFSPSMPRLATSS--FDKTVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNKDDLICSCDG-----DG 620 (792)
Q Consensus 555 ~~V~~i~fspdg~~Lasgs--~Dg~V~IWdl~s~~~~i~~~~-------~h~~~V~sl~fspd~~~ll~sgs~-----Dg 620 (792)
..+..|+++++|+++++.. .++.++||.+++ +. +..+. .+...+.+|+|.+++. |+++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DG-LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TE-EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CC-eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence 6789999999999888864 234366666653 33 33221 2456799999999864 5544333 57
Q ss_pred cEEEEEcCCCeeEEEeeC---------CeeEEEEecCCCEEEEEE----cCCeEEEEECCCCeEEEEecCCCCCeE-EEE
Q 003840 621 EIRYWSINNGSCTRVFKG---------GTAQMRFQPHLGRYLAAA----AENVVSILDAETQACRLSLQGHTKPID-SVC 686 (792)
Q Consensus 621 ~I~iwdl~~~~~~~~~~~---------~~~~v~~sp~~~~lla~s----~dg~I~i~D~~t~~~~~~l~~h~~~V~-sv~ 686 (792)
.|.+||+.+++.++.+.. ....+++.++++.++++. .++.|.+||..+++....+.+|..... ...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 899999999987776642 236789998777766655 468999999999888777765432211 133
Q ss_pred EcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECC---CCc-----
Q 003840 687 WDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMS---ENK----- 756 (792)
Q Consensus 687 ~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg-~I~IwDl~---~~~----- 756 (792)
+..+|..+.+.+.+ .++.|. ..+..++|+|+++.|+++...+ .|+.++.. .+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp CEETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred eeECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 44466666655555 554443 1356799999999999888776 66666532 111
Q ss_pred ---EEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 757 ---TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 757 ---~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.+...++......++++++|.++++...++.|.+||
T Consensus 237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 012224445677899999999998888889999986
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.11 E-value=9.3e-10 Score=117.38 Aligned_cols=254 Identities=11% Similarity=0.077 Sum_probs=164.9
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccC
Q 003840 518 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS 597 (792)
Q Consensus 518 lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~ 597 (792)
+.+..+| .|.+++.++.|..|| .+++.+..+..+...+.++.+..++. |++++.+ |..||. + +..+..+....
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~-g~~~~~~~~~~ 97 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-D-GTEKWRFDTKK 97 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-C-GGGGGGSCC--
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-C-CcEEEEEECCC
Confidence 3444555 466677788899999 88887766665555667788877764 5555555 888886 3 33332222222
Q ss_pred CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003840 598 ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS 674 (792)
Q Consensus 598 ~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~ 674 (792)
..+....+. + . .++.++.++.|..||.. ++....+... ...+...++ +.+++++.++.|..||.. ++.+..
T Consensus 98 ~~~~~~~~~-~-~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~-g~l~vgt~~~~l~~~d~~-g~~~~~ 171 (330)
T 3hxj_A 98 AIVSDFTIF-E-D-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSED-GTIYVGSNDNYLYAINPD-GTEKWR 171 (330)
T ss_dssp ---CCEEEE-T-T-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTT-SCEEEECTTSEEEEECTT-SCEEEE
T ss_pred CcccCceEE-C-C-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCC-CEEEEEcCCCEEEEECCC-CCEeEE
Confidence 222233333 3 3 34577788999999998 7766555432 233444444 557778888999999999 877777
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 675 LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 675 l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
+......+.++.++.++.++++. +.|..|| .++ ..+..+......+.++++.+++. |++++.++.|..+|...
T Consensus 172 ~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g 244 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG 244 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS
T ss_pred EecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC
Confidence 76666677888888888866554 8888999 554 34444444456677888888775 67777788899998544
Q ss_pred CcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 755 NKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 755 ~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.....+......+.++.+..++. |..++.+|.|..||
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAIN 281 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred CEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence 44334444444455666665664 55677787787765
No 237
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.05 E-value=9.9e-11 Score=128.74 Aligned_cols=200 Identities=11% Similarity=0.039 Sum_probs=111.1
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCee---
Q 003840 565 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA--- 641 (792)
Q Consensus 565 dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~--- 641 (792)
++..|++++.||.|+.||..+ ++.+..+.. +.+.+..+..++. ++++++.||.|+.||..+++.+..+.....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~t-G~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRT-GSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTT-CCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 567899999999999999998 566666554 4555555555544 555778899999999999887766543211
Q ss_pred -EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 003840 642 -QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 719 (792)
Q Consensus 642 -~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~ 719 (792)
..-+...++.+++++.++.|+.||.++++.+..+..+. .+.++|++..|++++.+ .|+.||.++++....+..
T Consensus 84 ~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~- 158 (369)
T 2hz6_A 84 QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY- 158 (369)
T ss_dssp TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEE-
T ss_pred ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec-
Confidence 00011145678888889999999999999988776543 23456678888888877 999999998854322211
Q ss_pred ecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEE-EEEeCCCC
Q 003840 720 SCNGNKFHSCVFHPTY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA-LAVSTETG 777 (792)
Q Consensus 720 ~~~~~~i~si~fspdg---~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~s-l~fspdg~ 777 (792)
.. ....++..+. ..+++++.+|.|+.||..+++.+.......++.. ..++.++.
T Consensus 159 ~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 159 FD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp EE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred cc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 11 1222333332 5688889999999999999998744444555543 34445554
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.04 E-value=2e-09 Score=122.94 Aligned_cols=242 Identities=13% Similarity=0.081 Sum_probs=161.8
Q ss_pred CCCEEEEEeC-CCeEEEEECCCCceeEEecc-CCCCEEEEEE-C-CCCCeEEEEe------------------CCCcEEE
Q 003840 523 DGKLLATGGH-DKKAVLWHTDTLKSKTNLEE-HSSLITDVRF-S-PSMPRLATSS------------------FDKTVRV 580 (792)
Q Consensus 523 dg~~Lasgs~-Dg~I~vWdl~t~~~~~~l~~-h~~~V~~i~f-s-pdg~~Lasgs------------------~Dg~V~I 580 (792)
||++|++... ++.|.+.|+++.++...+.- ....+..+++ + |+++++++++ +++.|.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888888765 45699999999998886643 2356889998 5 8999998885 3467999
Q ss_pred EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC--------------cEEEEEcCCCeeEEEeeCCeeEEEEe
Q 003840 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--------------EIRYWSINNGSCTRVFKGGTAQMRFQ 646 (792)
Q Consensus 581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg--------------~I~iwdl~~~~~~~~~~~~~~~v~~s 646 (792)
+|.++ .+.+..+.-.. .-..++++|+++.+++++.... .|.++|+.... .+.
T Consensus 180 ID~~t-~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~------------~~v 245 (595)
T 1fwx_A 180 VDADK-WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE------------KAI 245 (595)
T ss_dssp EETTT-TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH------------HHH
T ss_pred EECCC-CeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee------------Eec
Confidence 99987 45555544222 3467889999988887775542 24444433211 122
Q ss_pred cCCCEEEEEEcCCeEEEEECCC--CeE-EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCC--------Cc
Q 003840 647 PHLGRYLAAAAENVVSILDAET--QAC-RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGS--------EG 713 (792)
Q Consensus 647 p~~~~lla~s~dg~I~i~D~~t--~~~-~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~--------~~ 713 (792)
++++.... +.|.|.|.++ ++. +..+.. .....++.++|||+++++++.. .|.++|+.+.. ..
T Consensus 246 ~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~ 320 (595)
T 1fwx_A 246 AAGDYQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR 320 (595)
T ss_dssp HHTCSEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred cCCCeeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence 33443332 5699999998 544 444432 2345689999999999988865 99999998531 01
Q ss_pred ceEEEeecCCCceEEEEEeCCCCEEEE-EEcCCeEEEEECCC----------CcEE-EEcccCCCe-----EEEEEeCCC
Q 003840 714 ECVHELSCNGNKFHSCVFHPTYPSLLV-IGCYQSLELWNMSE----------NKTM-TLTAHEGLI-----AALAVSTET 776 (792)
Q Consensus 714 ~~i~~~~~~~~~i~si~fspdg~~L~s-gs~dg~I~IwDl~~----------~~~~-~~~~h~~~V-----~sl~fspdg 776 (792)
..+.....-+.....++|+++| ++++ ..-++.|.+||+.+ ...+ ++..|..+- .++.+++||
T Consensus 321 ~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG 399 (595)
T 1fwx_A 321 SAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN 399 (595)
T ss_dssp GGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS
T ss_pred cceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC
Confidence 1222222345568899999999 5554 45578999999977 4444 444443321 223457999
Q ss_pred CEEEEEeC
Q 003840 777 GYVASASH 784 (792)
Q Consensus 777 ~~LaSgs~ 784 (792)
++|++++.
T Consensus 400 k~l~~~Nk 407 (595)
T 1fwx_A 400 DWLVCLSK 407 (595)
T ss_dssp SEEEEEES
T ss_pred CEEEEcCC
Confidence 99998764
No 239
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.04 E-value=3.2e-08 Score=117.33 Aligned_cols=261 Identities=13% Similarity=0.123 Sum_probs=169.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEeccCCCC----------E-EEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003840 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----------I-TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 592 (792)
Q Consensus 524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~----------V-~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~ 592 (792)
+..|++++.++.|+.+|..+|+.+-++...... + ..+++ .+..|++++.|+.|+.+|..+ ++.+..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~t-G~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKT-GKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTT-CCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCC-CCEeee
Confidence 457778888999999999999998877643211 0 11222 355788899999999999998 555544
Q ss_pred ecccC----CCeEE-EEEcCCCCeEEEEEe-----CCCcEEEEEcCCCeeEEEeeCC----e------------------
Q 003840 593 FMGHS----ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGG----T------------------ 640 (792)
Q Consensus 593 ~~~h~----~~V~s-l~fspd~~~ll~sgs-----~Dg~I~iwdl~~~~~~~~~~~~----~------------------ 640 (792)
+.... ..+.+ ..+. +..+++..+ .+|.|+.||.++++.+..+... .
T Consensus 143 ~~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 43211 11111 1111 233443322 2589999999999998876421 0
Q ss_pred ------------eEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEecC--CC-------C
Q 003840 641 ------------AQMRFQPHLGRYLAAAAEN-------------------VVSILDAETQACRLSLQG--HT-------K 680 (792)
Q Consensus 641 ------------~~v~~sp~~~~lla~s~dg-------------------~I~i~D~~t~~~~~~l~~--h~-------~ 680 (792)
..+.+.+..+.+++++.++ .|..+|.++++.+..+.. |. .
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~ 300 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ 300 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence 1367888888888887765 399999999999988764 32 2
Q ss_pred CeEEEEEcCCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeecCC------------Cc-------------------
Q 003840 681 PIDSVCWDPSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG------------NK------------------- 725 (792)
Q Consensus 681 ~V~sv~~spdg~---~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~------------~~------------------- 725 (792)
+.....+..+|+ +|+.++.+ .++++|..+++. +....... .+
T Consensus 301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~ 377 (668)
T 1kv9_A 301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL---ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP 377 (668)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE---eccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence 233333334665 67777777 999999988843 21111100 00
Q ss_pred -----eEEEEEeCCCCEEEEEE------------------------------------cCCeEEEEECCCCcEEEEcccC
Q 003840 726 -----FHSCVFHPTYPSLLVIG------------------------------------CYQSLELWNMSENKTMTLTAHE 764 (792)
Q Consensus 726 -----i~si~fspdg~~L~sgs------------------------------------~dg~I~IwDl~~~~~~~~~~h~ 764 (792)
...++++|+...+++.. .+|.|..||+.+++.+....+.
T Consensus 378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~ 457 (668)
T 1kv9_A 378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP 457 (668)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence 11267888777666522 2378999999999988433333
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 765 GLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 765 ~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
..+....+...+.+|++++.||.|++||
T Consensus 458 ~~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 458 THWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCCcCceeEeCCCEEEEECCcccchhhh
Confidence 4444445556788899999999999986
No 240
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.01 E-value=1.4e-06 Score=105.30 Aligned_cols=261 Identities=12% Similarity=0.075 Sum_probs=173.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc--------CCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--------HSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~--------h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl 583 (792)
...|.+++.+++|+ |.+|+.++-|.+||..++........ ....|.+++..+++.+|.+|+.++-|.+||.
T Consensus 356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence 45699999999886 55577787899999887665443211 2467999999888875777888777999998
Q ss_pred CCCCceeEEec-----ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---------CCeeEEEEecCC
Q 003840 584 DNPGYSLRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQMRFQPHL 649 (792)
Q Consensus 584 ~s~~~~i~~~~-----~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---------~~~~~v~~sp~~ 649 (792)
.+ +. +..+. .....|.++...+++. +. .|+. +.|.+||..+++...... ..+.++....++
T Consensus 435 ~~-~~-~~~~~~~~~~l~~~~v~~i~~d~~g~-lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g 509 (795)
T 4a2l_A 435 NS-GQ-VENFNQRNSQLVNENVYAILPDGEGN-LW-LGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK 509 (795)
T ss_dssp TT-CC-EEEECTTTSCCSCSCEEEEEECSSSC-EE-EEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC
T ss_pred CC-Cc-EEEeecCCCCcCCCeeEEEEECCCCC-EE-EEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC
Confidence 86 33 33332 1345799999888765 33 3444 558999998876554321 234556566554
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEec-------CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeec-
Q 003840 650 GRYLAAAAENVVSILDAETQACRLSLQ-------GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC- 721 (792)
Q Consensus 650 ~~lla~s~dg~I~i~D~~t~~~~~~l~-------~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~- 721 (792)
.+.+++. +.|.+||..+.+. .+. .....|.+|..+++|.+.++... .|..||..+. .+..+..
T Consensus 510 -~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~----~~~~~~~~ 580 (795)
T 4a2l_A 510 -RLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDK----QIKRYNTT 580 (795)
T ss_dssp -CEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTT----EEEEECGG
T ss_pred -CEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCC----cEEEeCCC
Confidence 4555666 6688899887765 222 12346899999999987765544 7888997653 2222221
Q ss_pred ---CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC----Ce--EEEEEeCCCCEEEEEeCCCcEEE
Q 003840 722 ---NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG----LI--AALAVSTETGYVASASHDKFVKL 790 (792)
Q Consensus 722 ---~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~----~V--~sl~fspdg~~LaSgs~DG~I~I 790 (792)
....|.++...++|...+ ++ ++.|..||..+++...+....+ .+ .++...++|.+++ |+.+|.+++
T Consensus 581 ~gl~~~~i~~i~~d~~g~lWi-~t-~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl~~~ 655 (795)
T 4a2l_A 581 NGLPNNVVYGILEDSFGRLWL-ST-NRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYF-GGINGITTF 655 (795)
T ss_dssp GTCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEE-EETTEEEEE
T ss_pred CCCchhheEEEEECCCCCEEE-Ec-CCceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEE-ecCCceEEE
Confidence 134588888888887544 44 4568889998887765554333 22 4667777887554 667776554
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.01 E-value=1.1e-07 Score=98.94 Aligned_cols=203 Identities=9% Similarity=0.045 Sum_probs=144.1
Q ss_pred ceeEEeccCC--CCEEEEEECCCCCeEEEEeC--CCcEEEEeCCCCCceeEEec-ccCCCeEEEEEcCCCCeEEEEEeCC
Q 003840 545 KSKTNLEEHS--SLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGD 619 (792)
Q Consensus 545 ~~~~~l~~h~--~~V~~i~fspdg~~Lasgs~--Dg~V~IWdl~s~~~~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~D 619 (792)
+.+.++. |. .....+.|++++.++++.+. ++.|+++|+.+ ++.+..+. +.......+++. ++.++++.-.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t-g~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQT-GKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTT-CCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCC-CCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 3445553 33 34689999998754444443 57899999998 55666554 222233456665 56777777789
Q ss_pred CcEEEEEcCCCeeEEEeeCC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC-----CCeEEEEEcCCCCE
Q 003840 620 GEIRYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-----KPIDSVCWDPSGEL 693 (792)
Q Consensus 620 g~I~iwdl~~~~~~~~~~~~-~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~-----~~V~sv~~spdg~~ 693 (792)
+.|.++|..+.+.+..+..+ .....+++++++++++..++.|.++|.++.+.+..+.-.. ..++.+.|. +|++
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 99999999999999888654 4456677888988888888999999999998887766321 236678888 6765
Q ss_pred EEEEeCC-eEEEEECCCCCCcceEEEeecC-------------CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCC
Q 003840 694 LASVSED-SVRVWTVGSGSEGECVHELSCN-------------GNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSEN 755 (792)
Q Consensus 694 Las~s~d-~I~IwDl~s~~~~~~i~~~~~~-------------~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~~~ 755 (792)
++....+ .|.+.|..++ +.+..+... ......++|+|+++.|++++ ..+.|++.++...
T Consensus 165 yvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 5555444 9999999887 445444421 13568999999998777766 4578888887554
No 242
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=2.2e-06 Score=103.32 Aligned_cols=270 Identities=8% Similarity=-0.029 Sum_probs=173.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--------------cCCCCEEEEEECCCCCeEEEEeCCCc
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--------------EHSSLITDVRFSPSMPRLATSSFDKT 577 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~--------------~h~~~V~~i~fspdg~~Lasgs~Dg~ 577 (792)
...|.++....+|. |..|+..+-|.+||..+........ .....|.+|....+|. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 46799999998885 5556665668889987765432211 1346799999998875 666776677
Q ss_pred EEEEeCCCCCceeEEec----------ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe------eCCee
Q 003840 578 VRVWDADNPGYSLRTFM----------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KGGTA 641 (792)
Q Consensus 578 V~IWdl~s~~~~i~~~~----------~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~------~~~~~ 641 (792)
|..|+..+.. ...+. -....|.+++...++. |..|+.++-|.+||..++...... ...+.
T Consensus 335 l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~ 410 (781)
T 3v9f_A 335 INFISNAPPT--FHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL 410 (781)
T ss_dssp EEEECSSCCS--CEEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEECC-----CCCSBEE
T ss_pred EEEeCCCCCc--ceeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE
Confidence 9999987532 22221 1235699999887765 335666777999998765433211 12234
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEe
Q 003840 642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL 719 (792)
Q Consensus 642 ~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~--~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~ 719 (792)
++....+ +.+.+++.++.|..||..+++...... .....|.++..+++|.+.+.. .+.|.+||..++.. ..+...
T Consensus 411 ~i~~d~~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt-~~Gl~~~~~~~~~~-~~~~~~ 487 (781)
T 3v9f_A 411 CSLKDSE-GNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGT-HAGVFVIDLASKKV-IHHYDT 487 (781)
T ss_dssp EEEECTT-SCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEE-TTEEEEEESSSSSC-CEEECT
T ss_pred EEEECCC-CCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEE-CCceEEEeCCCCeE-EecccC
Confidence 4444444 567778877889999988776543221 134679999998888766554 47899999876432 222111
Q ss_pred e---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc----cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 720 S---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA----HEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 720 ~---~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~----h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
. .....|.++...+++. |.+++.++.|..||..+++...+.. ....|.++...++|.+.++. .+|.|..||
T Consensus 488 ~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d 565 (781)
T 3v9f_A 488 SNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPS 565 (781)
T ss_dssp TTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred cccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence 1 1135688888888887 5556665568889988876655432 23568899998888866644 466546654
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.97 E-value=6e-07 Score=93.18 Aligned_cols=220 Identities=9% Similarity=0.010 Sum_probs=140.7
Q ss_pred CeEEEEeCCCcEEEEeCCCCCce----eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CC
Q 003840 567 PRLATSSFDKTVRVWDADNPGYS----LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GG 639 (792)
Q Consensus 567 ~~Lasgs~Dg~V~IWdl~s~~~~----i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~ 639 (792)
.+|+.+.. +.|+.++++..... ...+......+.+++|++++..++++...++.|..+++........+. ..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 35555554 46888888753211 112222234578999999888888888788999999998765444443 24
Q ss_pred eeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe-C--C-eEEEEECCCCCCcc
Q 003840 640 TAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-E--D-SVRVWTVGSGSEGE 714 (792)
Q Consensus 640 ~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s-~--d-~I~IwDl~s~~~~~ 714 (792)
...+++.++++.++++.. .+.|.++|.+.......+.........+++++++.+|+.+. . . .|.++++... ...
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRR 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcE
Confidence 567899998887777665 67999999875433222322224578999999665554444 2 2 7888887532 212
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe-CCCcEEEeC
Q 003840 715 CVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS-HDKFVKLWK 792 (792)
Q Consensus 715 ~i~~~~~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs-~DG~I~IWd 792 (792)
.+ ..........+++++++.+|+++... +.|.++|+.+.....+.........+++. +..|+.+. ..+.|.++|
T Consensus 160 ~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 160 IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEe
Confidence 22 11233467899999998888777654 69999999866544333333445677764 44555454 457777653
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.96 E-value=1.3e-06 Score=105.65 Aligned_cols=263 Identities=7% Similarity=0.050 Sum_probs=177.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-------CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-------h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~ 584 (792)
...|.++..+++|.+.+ |+.+ -|.+||..++........ ....|.+|...++|. |..|+.++-|.+|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 46799999999987544 5555 588999887765443221 236799999998885 5567777779999876
Q ss_pred CCCceeEEecc-------cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----------CCeeEEEEe
Q 003840 585 NPGYSLRTFMG-------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----------GGTAQMRFQ 646 (792)
Q Consensus 585 s~~~~i~~~~~-------h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----------~~~~~v~~s 646 (792)
+.. +..+.. ....|.+|+...++. |..|+.++-|.+||..++....... ..+.+++..
T Consensus 339 ~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 339 RNR--FKNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp GGS--SEEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred ccc--ceEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence 522 222221 235699999888765 3457778789999988776544321 234456666
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEec----CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEee--
Q 003840 647 PHLGRYLAAAAENVVSILDAETQACRLSLQ----GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELS-- 720 (792)
Q Consensus 647 p~~~~lla~s~dg~I~i~D~~t~~~~~~l~----~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~-- 720 (792)
.++..+.+++.++.|.+||..+++...... .....|.++..+++|.+++... +.|.+||..++ . +..+.
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~---~-~~~~~~~ 489 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR---S-FTTIEKE 489 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT---E-EEECCBC
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC---e-EEEcccc
Confidence 665548888888889999998876544322 1345799999999888776655 67889998654 2 22221
Q ss_pred -----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc-------ccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003840 721 -----CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-------AHEGLIAALAVSTETGYVASASHDKFV 788 (792)
Q Consensus 721 -----~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~-------~h~~~V~sl~fspdg~~LaSgs~DG~I 788 (792)
.....|.++...+++.. .+++. +.|..||..+++. .+. .....|.++..+++|.+.++. .+| |
T Consensus 490 ~~~~~~~~~~i~~i~~d~~g~l-Wigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G-l 564 (795)
T 4a2l_A 490 KDGTPVVSKQITTLFRDSHKRL-WIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-REG-F 564 (795)
T ss_dssp TTCCBCCCCCEEEEEECTTCCE-EEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SSC-E
T ss_pred ccccccCCceEEEEEECCCCCE-EEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CCC-c
Confidence 12356888988888874 44555 5689999887765 332 134578999999988866644 344 5
Q ss_pred EEe
Q 003840 789 KLW 791 (792)
Q Consensus 789 ~IW 791 (792)
..|
T Consensus 565 ~~~ 567 (795)
T 4a2l_A 565 YCF 567 (795)
T ss_dssp EEE
T ss_pred eeE
Confidence 444
No 245
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.95 E-value=2.7e-07 Score=107.28 Aligned_cols=259 Identities=11% Similarity=0.098 Sum_probs=163.7
Q ss_pred CCEEEEEeC-CCeEEEEEC-CCCceeEEeccCCC-C----------EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003840 524 GKLLATGGH-DKKAVLWHT-DTLKSKTNLEEHSS-L----------ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 590 (792)
Q Consensus 524 g~~Lasgs~-Dg~I~vWdl-~t~~~~~~l~~h~~-~----------V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i 590 (792)
+..|++++. ++.|+.+|. ++++.+-.+..... . ...+++ .+..|++++.|+.|..+|..+ ++.+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~t-G~~~ 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKT-GKIN 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT-CCEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCC-CCEE
Confidence 446667777 889999999 89998877653221 0 011222 355888888999999999988 4444
Q ss_pred EEecccC----CCeE-EEEEcCCCCeEEEEEeC------CCcEEEEEcCCCeeEEEeeCCe-------------------
Q 003840 591 RTFMGHS----ASVM-SLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFKGGT------------------- 640 (792)
Q Consensus 591 ~~~~~h~----~~V~-sl~fspd~~~ll~sgs~------Dg~I~iwdl~~~~~~~~~~~~~------------------- 640 (792)
..+.... ..+. +..+. +..++ +++. ++.|+.+|.++++.+..+....
T Consensus 139 W~~~~~~~~~~~~~~~~P~v~--~g~v~-vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 139 WEVEVCDPKVGSTLTQAPFVA--KDTVL-MGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp EEEECCCGGGTCBCCSCCEEE--TTEEE-EECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEecCCCCCccceeccCCEEE--CCEEE-EEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence 4433111 0121 11111 23444 4443 7999999999999887765321
Q ss_pred ----------------------eEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEecC--CC-
Q 003840 641 ----------------------AQMRFQPHLGRYLAAAAE----------------NVVSILDAETQACRLSLQG--HT- 679 (792)
Q Consensus 641 ----------------------~~v~~sp~~~~lla~s~d----------------g~I~i~D~~t~~~~~~l~~--h~- 679 (792)
..+++.+..+.++++..+ +.|..+|.++++.+..+.. |.
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~ 295 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDE 295 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcc
Confidence 125667777788777642 3599999999999887753 21
Q ss_pred -------CCeEEEEEcCCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeecCC-------------Cce---------
Q 003840 680 -------KPIDSVCWDPSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG-------------NKF--------- 726 (792)
Q Consensus 680 -------~~V~sv~~spdg~---~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~-------------~~i--------- 726 (792)
.++. +....+|+ +++.++.+ .++++|..+++ .+..+.... .++
T Consensus 296 ~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~ 371 (571)
T 2ad6_A 296 WDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN---LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRM 371 (571)
T ss_dssp SCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCT
T ss_pred cccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC---EEeeecccCCccccccccccCCceecccccCCCC
Confidence 1221 22224674 56667766 99999998873 333322111 111
Q ss_pred -----------------EEEEEeCCCCEEEEEEc-------------------------------------CCeEEEEEC
Q 003840 727 -----------------HSCVFHPTYPSLLVIGC-------------------------------------YQSLELWNM 752 (792)
Q Consensus 727 -----------------~si~fspdg~~L~sgs~-------------------------------------dg~I~IwDl 752 (792)
..++|+|+...|++... ++.|+.||+
T Consensus 372 ~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~ 451 (571)
T 2ad6_A 372 DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL 451 (571)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT
T ss_pred CCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEEC
Confidence 24578888887777642 468999999
Q ss_pred CCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 753 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 753 ~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.+++.+....+...+.+..+...+.+|+.++.||.|+.||
T Consensus 452 ~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 452 TTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp TTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred CCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 9999874333333343333344566777888999999886
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.91 E-value=1.7e-07 Score=96.66 Aligned_cols=191 Identities=14% Similarity=0.171 Sum_probs=135.5
Q ss_pred eeEEeccCC--CCEEEEEECCCCCeEEEEeCCC--cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc
Q 003840 546 SKTNLEEHS--SLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 621 (792)
Q Consensus 546 ~~~~l~~h~--~~V~~i~fspdg~~Lasgs~Dg--~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~ 621 (792)
.+.++. |. .....|.|+ ++.++++.+.+| .|+++|+.+ ++.+..+.-. .......+.++++.+++....++.
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~T-gkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIES-GKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTT-CCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCC-CcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCE
Confidence 444553 33 335788888 666666777766 899999998 5555555432 233332233345677777777999
Q ss_pred EEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC--C---CCeEEEEEcCCCCEEEE
Q 003840 622 IRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH--T---KPIDSVCWDPSGELLAS 696 (792)
Q Consensus 622 I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h--~---~~V~sv~~spdg~~Las 696 (792)
+.+||..+.+.+..+........+.++++.++++..++.|.++|..+.+.+.++... . ..++.+.|. +|++++.
T Consensus 109 v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan 187 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN 187 (262)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence 999999999999998865555566678888888887889999999999888776542 1 334567776 6766655
Q ss_pred EeCC-eEEEEECCCCCCcceEEEeecC------------CCceEEEEEeCCCCEEEEEEcC
Q 003840 697 VSED-SVRVWTVGSGSEGECVHELSCN------------GNKFHSCVFHPTYPSLLVIGCY 744 (792)
Q Consensus 697 ~s~d-~I~IwDl~s~~~~~~i~~~~~~------------~~~i~si~fspdg~~L~sgs~d 744 (792)
.-.+ .|.+.|..++ +.+..+... ....+.++|+|+++.|++.+..
T Consensus 188 ~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 188 VWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp ETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 5444 9999999887 444444432 2356899999999988888765
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.91 E-value=3.8e-07 Score=106.19 Aligned_cols=261 Identities=11% Similarity=0.068 Sum_probs=163.0
Q ss_pred CCEEEEEeC-CCeEEEEEC-CCCceeEEeccCCCC-----------EEEEEECCCCCe----EEEEeCCCcEEEEeCCCC
Q 003840 524 GKLLATGGH-DKKAVLWHT-DTLKSKTNLEEHSSL-----------ITDVRFSPSMPR----LATSSFDKTVRVWDADNP 586 (792)
Q Consensus 524 g~~Lasgs~-Dg~I~vWdl-~t~~~~~~l~~h~~~-----------V~~i~fspdg~~----Lasgs~Dg~V~IWdl~s~ 586 (792)
+..|++++. ++.|+.+|. .+++.+-.+...... ...+++.|.+.. |++++.|+.|+.+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T- 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET- 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT-
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC-
Confidence 446777777 889999999 899988777543210 123455443444 88899999999999998
Q ss_pred CceeEEecccC----CCeEE-EEEcCCCCeEEEEEe------CCCcEEEEEcCCCeeEEEeeCCee--------------
Q 003840 587 GYSLRTFMGHS----ASVMS-LDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTA-------------- 641 (792)
Q Consensus 587 ~~~i~~~~~h~----~~V~s-l~fspd~~~ll~sgs------~Dg~I~iwdl~~~~~~~~~~~~~~-------------- 641 (792)
++.+-...... ..+.+ ..+. + ..++ +++ .+|.|+.||.++++.+..+.....
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~-vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYVV-K-DKVI-IGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEE-T-TEEE-ECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CCEEEeecCCCCCccceeecCCEEE-C-CEEE-EEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence 44444332211 01211 1122 2 3344 443 379999999999999877653211
Q ss_pred ---------------------------EEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEecCC
Q 003840 642 ---------------------------QMRFQPHLGRYLAAAAE----------------NVVSILDAETQACRLSLQGH 678 (792)
Q Consensus 642 ---------------------------~v~~sp~~~~lla~s~d----------------g~I~i~D~~t~~~~~~l~~h 678 (792)
.+.+.+..+.+++++.+ +.|..+|.++++.+..+...
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 24566778888888765 38999999999998877642
Q ss_pred CC----------CeEEEEEc-CCC---CEEEEEeCC-eEEEEECCCCCCcceEEEeecC-------------CCc-----
Q 003840 679 TK----------PIDSVCWD-PSG---ELLASVSED-SVRVWTVGSGSEGECVHELSCN-------------GNK----- 725 (792)
Q Consensus 679 ~~----------~V~sv~~s-pdg---~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~-------------~~~----- 725 (792)
.. ++. +... .+| ..++.++.+ .++++|.++++ .+...... ..+
T Consensus 298 ~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~~~~~ 373 (599)
T 1w6s_A 298 PHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA---LVSANKLDDTVNVFKSVDLKTGQPVRDPE 373 (599)
T ss_dssp TTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCCEEECGG
T ss_pred CCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC---EeecccccCCcccccccccCCCceeeccc
Confidence 21 121 2222 567 466667777 99999998874 33322211 011
Q ss_pred ---------------------eEEEEEeCCCCEEEEEE---------------------------------------cCC
Q 003840 726 ---------------------FHSCVFHPTYPSLLVIG---------------------------------------CYQ 745 (792)
Q Consensus 726 ---------------------i~si~fspdg~~L~sgs---------------------------------------~dg 745 (792)
...++|+|+...+++.. ..|
T Consensus 374 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G 453 (599)
T 1w6s_A 374 YGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLG 453 (599)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCE
T ss_pred cCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcC
Confidence 12456777766655431 246
Q ss_pred eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 746 SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 746 ~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.|..||+.+++.+-...+..++..-.+...+.+|+.++.||.|+.||
T Consensus 454 ~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 454 QIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp EEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred eEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence 89999999998873333332232222333566777888999999875
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.90 E-value=3e-07 Score=95.62 Aligned_cols=202 Identities=8% Similarity=0.035 Sum_probs=139.2
Q ss_pred cceeeeeeeecCCC--CeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCceeEEeccCC-CCEEEEEECCCCCeEEE-Ee
Q 003840 500 FSFKEANSVRASTS--KVICCHFSSDGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLAT-SS 573 (792)
Q Consensus 500 ~~~~~~~~l~~H~~--~V~~lafspdg~~Lasgs~--Dg~I~vWdl~t~~~~~~l~~h~-~~V~~i~fspdg~~Las-gs 573 (792)
..++.+.++. |.. ....++|++|+.++++.+. ++.|.++|+.+++.+..+.-.. .....+++. ++.|+. .-
T Consensus 7 ~~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~ 83 (266)
T 2iwa_A 7 YIVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVW 83 (266)
T ss_dssp EEEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEET
T ss_pred cCceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEe
Confidence 3455566664 433 3689999998754444443 5799999999999998876322 223345554 445544 45
Q ss_pred CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC--------eeEEEE
Q 003840 574 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--------TAQMRF 645 (792)
Q Consensus 574 ~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~--------~~~v~~ 645 (792)
.++.|.++|..+ .+.+..+...... ...+++|++.++++- .++.|.++|..+.+.+..+.-. ...+.|
T Consensus 84 ~~~~v~viD~~t-~~v~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 84 LKNIGFIYDRRT-LSNIKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp TCSEEEEEETTT-TEEEEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred cCCEEEEEECCC-CcEEEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence 678999999987 5666666432122 233556777777554 6889999999998888776532 345666
Q ss_pred ecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCC-------------CCCeEEEEEcCCCCEEEEEeCC--eEEEEECCC
Q 003840 646 QPHLGRYLAAAA-ENVVSILDAETQACRLSLQGH-------------TKPIDSVCWDPSGELLASVSED--SVRVWTVGS 709 (792)
Q Consensus 646 sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h-------------~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s 709 (792)
. + +++++... ++.|.+.|..+++++..+... ......|+|+++++.|++++.. .|.+.++..
T Consensus 160 ~-d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 160 I-N-GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp E-T-TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred E-C-CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 6 4 46666664 789999999999998887632 1346899999999877666654 888888754
Q ss_pred C
Q 003840 710 G 710 (792)
Q Consensus 710 ~ 710 (792)
.
T Consensus 238 ~ 238 (266)
T 2iwa_A 238 V 238 (266)
T ss_dssp C
T ss_pred c
Confidence 3
No 249
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.88 E-value=6.1e-08 Score=110.73 Aligned_cols=204 Identities=12% Similarity=0.081 Sum_probs=145.3
Q ss_pred CeEEEEE-c-CCCCEEEEEe------------------CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe
Q 003840 514 KVICCHF-S-SDGKLLATGG------------------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS 573 (792)
Q Consensus 514 ~V~~laf-s-pdg~~Lasgs------------------~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs 573 (792)
.+..+++ + |+++++++++ .++.|.++|.++.+....+.-.. ....++++|+|+++++++
T Consensus 135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~ 213 (595)
T 1fwx_A 135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTS 213 (595)
T ss_dssp SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEE
T ss_pred CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEe
Confidence 4778887 5 8999988884 34679999999999888887433 346678999999999888
Q ss_pred CCC--------------------------------------cEEEEeCCC--CCceeEEecccCCCeEEEEEcCCCCeEE
Q 003840 574 FDK--------------------------------------TVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLI 613 (792)
Q Consensus 574 ~Dg--------------------------------------~V~IWdl~s--~~~~i~~~~~h~~~V~sl~fspd~~~ll 613 (792)
++. .|.|.|..+ ....+..+.. .....++.++|||++++
T Consensus 214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~ 292 (595)
T 1fwx_A 214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLC 292 (595)
T ss_dssp SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEE
T ss_pred cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEE
Confidence 653 366677765 2221333332 23456899999999999
Q ss_pred EEEeCCCcEEEEEcCCCe------------eEEEee--CCeeEEEEecCCCEEEEEE-cCCeEEEEECCC----------
Q 003840 614 CSCDGDGEIRYWSINNGS------------CTRVFK--GGTAQMRFQPHLGRYLAAA-AENVVSILDAET---------- 668 (792)
Q Consensus 614 ~sgs~Dg~I~iwdl~~~~------------~~~~~~--~~~~~v~~sp~~~~lla~s-~dg~I~i~D~~t---------- 668 (792)
+++..+.+|.++|+.+.+ .+.... .+...++|++++ ++++.. .|+.|.+||+.+
T Consensus 293 V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~ 371 (595)
T 1fwx_A 293 VAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKV 371 (595)
T ss_dssp EECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSC
T ss_pred EeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccccc
Confidence 999899999999999653 233333 356778999999 555444 499999999977
Q ss_pred CeEEEEecCCCCCe-----EEEEEcCCCCEEEEEeC---CeE-----------EEEECCCCCCcceEEEeec
Q 003840 669 QACRLSLQGHTKPI-----DSVCWDPSGELLASVSE---DSV-----------RVWTVGSGSEGECVHELSC 721 (792)
Q Consensus 669 ~~~~~~l~~h~~~V-----~sv~~spdg~~Las~s~---d~I-----------~IwDl~s~~~~~~i~~~~~ 721 (792)
...+.++..|-.+- ..+.+++||++|++... |.+ .++|+. +...+.+.....
T Consensus 372 ~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis-~~~m~lv~d~p~ 442 (595)
T 1fwx_A 372 DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDIS-GDKMVLVHDGPT 442 (595)
T ss_dssp CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECS-SSSCEEEEEEEE
T ss_pred ceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcC-CCcEEEEEEEcC
Confidence 56777777664432 12345799999998764 355 899994 445566655544
No 250
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=9.5e-06 Score=97.78 Aligned_cols=271 Identities=8% Similarity=0.020 Sum_probs=170.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-------CCCCEEEEEECC--CCCeEEEEeCCCcEEEEeC
Q 003840 513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSP--SMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-------h~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWdl 583 (792)
..|.+|....+|+.|.+|+.++-|..||..+.+....... ....|.+|.... ++ .|..++.++.|..||.
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~~~~ 144 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEYLDI 144 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEEEET
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeEEEC
Confidence 4699999999997466777775799999987665433111 123689998887 66 4555664555889998
Q ss_pred CCCCceeEEecc------cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----------eCCeeEEEEec
Q 003840 584 DNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----------KGGTAQMRFQP 647 (792)
Q Consensus 584 ~s~~~~i~~~~~------h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----------~~~~~~v~~sp 647 (792)
.+ + .+..+.. ....|.+|....++. +. .++.++.|..||..+++..... ...+.++....
T Consensus 145 ~~-~-~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~ 220 (781)
T 3v9f_A 145 AT-G-KFTHYNKSTVPALPSEQTWTATEAEDGK-LY-IGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDT 220 (781)
T ss_dssp TT-T-EEEEESTTTCTTCSCCCEEEEEEEETTE-EE-EEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECT
T ss_pred CC-C-eEEeeccCcccCCCccceEEEEECCCCC-EE-EEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcC
Confidence 75 2 2333321 234588888876654 33 4666657999998887654321 12344555555
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEec-------CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEE---
Q 003840 648 HLGRYLAAAAENVVSILDAETQACRLSLQ-------GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH--- 717 (792)
Q Consensus 648 ~~~~lla~s~dg~I~i~D~~t~~~~~~l~-------~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~--- 717 (792)
+ +.+.+++.+ .|.+||..+.+...... .....|.++..+.+|.+.+....+.|.+||..+........
T Consensus 221 ~-g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f 298 (781)
T 3v9f_A 221 N-GNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRF 298 (781)
T ss_dssp T-CCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------C
T ss_pred C-CCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeecccc
Confidence 4 456666665 79999988765432211 12356999999888876654433589999987642211111
Q ss_pred ----Ee----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc----------cCCCeEEEEEeCCCCEE
Q 003840 718 ----EL----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA----------HEGLIAALAVSTETGYV 779 (792)
Q Consensus 718 ----~~----~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~----------h~~~V~sl~fspdg~~L 779 (792)
.. ......|.++....+|. |.+|+.++.|..|+..+.....+.. ....|.+++...++.+.
T Consensus 299 ~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW 377 (781)
T 3v9f_A 299 EFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW 377 (781)
T ss_dssp EEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE
T ss_pred ccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE
Confidence 00 11345688888888886 7778878889999988766543321 23569999988887755
Q ss_pred EEEeCCCcEEEeC
Q 003840 780 ASASHDKFVKLWK 792 (792)
Q Consensus 780 aSgs~DG~I~IWd 792 (792)
+ |+.++-|.+||
T Consensus 378 i-gt~~~Gl~~~~ 389 (781)
T 3v9f_A 378 I-GTDGGGINVFE 389 (781)
T ss_dssp E-EEBSSCEEEEE
T ss_pred E-EeCCCcEEEEE
Confidence 4 55555566553
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.87 E-value=1e-06 Score=94.19 Aligned_cols=234 Identities=10% Similarity=0.009 Sum_probs=145.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-------------------CCCCEEEEEECCCCCeEEEEe
Q 003840 513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------------------HSSLITDVRFSPSMPRLATSS 573 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-------------------h~~~V~~i~fspdg~~Lasgs 573 (792)
....+++|+++|++++++..++.|..||..+++....... ....+..|++.++...|+++.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 4567889999999888888899999999876544321110 113578999997333555555
Q ss_pred CCCcEEEEeCCCCCceeEEecc-----cCCCeEEEEEcC-CCCeEEEEEeC-----------------CCcEEEEEcCCC
Q 003840 574 FDKTVRVWDADNPGYSLRTFMG-----HSASVMSLDFHP-NKDDLICSCDG-----------------DGEIRYWSINNG 630 (792)
Q Consensus 574 ~Dg~V~IWdl~s~~~~i~~~~~-----h~~~V~sl~fsp-d~~~ll~sgs~-----------------Dg~I~iwdl~~~ 630 (792)
..+.|.++|..+ + .+..+.. .......+++.+ ++. ++++... ++.|..||..++
T Consensus 99 ~~~~i~~~d~~~-g-~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 99 CYYHLSVVGSEG-G-HATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp TTTEEEEECTTC-E-ECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred CCCCEEEEeCCC-C-EEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 555588888764 2 2222221 123578899999 875 4434322 367999998877
Q ss_pred eeEEEee--CCeeEEEEecCCCEEEEEEc-CCeEEEEECCCC---eEEEEecCCCCCeEEEEEcCCCCEEEEEeC-----
Q 003840 631 SCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSE----- 699 (792)
Q Consensus 631 ~~~~~~~--~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~---~~~~~l~~h~~~V~sv~~spdg~~Las~s~----- 699 (792)
+...... .....++++++++.++++.. .+.|.+||+... ... .+....+ ...++++++|+++++...
T Consensus 176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence 6543322 34567899999987777654 689999998752 211 1111223 788999999997777654
Q ss_pred -----C-eEEEEECCCCCCcceEEEeecCC----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003840 700 -----D-SVRVWTVGSGSEGECVHELSCNG----NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 700 -----d-~I~IwDl~s~~~~~~i~~~~~~~----~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~ 756 (792)
. .|.++|.. + +.+..+.... ..+..+++ .++..+++....+.|.++++....
T Consensus 254 ~~~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 254 MHGRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp TTSCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred ccCCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence 2 57777753 2 4444444332 34566666 344433333456788888876443
No 252
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.85 E-value=1.9e-06 Score=91.58 Aligned_cols=230 Identities=11% Similarity=0.042 Sum_probs=140.6
Q ss_pred eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEe-CCC-cEE
Q 003840 546 SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDG-EIR 623 (792)
Q Consensus 546 ~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs-~Dg-~I~ 623 (792)
.+..+... .....++|+++++++++...++.|..||.+. .....+ .....+.+|++.+++. ++++.. .++ .|.
T Consensus 24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g--~~~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG--NQQIHA-TVEGKVSGLAFTSNGD-LVATGWNADSIPVV 98 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC--CEEEEE-ECSSEEEEEEECTTSC-EEEEEECTTSCEEE
T ss_pred EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC--ceEEEE-eCCCCceeEEEcCCCc-EEEEeccCCcceEE
Confidence 34444322 4578899999998777777889999999875 233222 2345688999999987 443433 332 477
Q ss_pred EEEcCCCeeEEEeeC----CeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeE-EEEec---------CCCCCeEEEEEc
Q 003840 624 YWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAA-AENVVSILDAETQAC-RLSLQ---------GHTKPIDSVCWD 688 (792)
Q Consensus 624 iwdl~~~~~~~~~~~----~~~~v~~sp~~~~lla~s-~dg~I~i~D~~t~~~-~~~l~---------~h~~~V~sv~~s 688 (792)
.+|..+++....... ....++..+ ++.++++. .++.|+++|..+++. +.... ..-.....| +
T Consensus 99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 778777776543321 112233333 45555555 488999999876532 22111 111234455 7
Q ss_pred CCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEE---ccc
Q 003840 689 PSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL---TAH 763 (792)
Q Consensus 689 pdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~---~~h 763 (792)
+++++|+.+... .|.+||+...........+.. ......+++.++|+++++....+.|.+||.. ++...+ ...
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~ 253 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG 253 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc
Confidence 888877666544 899999874111111111111 1345678999999876666667899999976 554322 222
Q ss_pred CCCeEEEEEe---CCCCEEEEEeCC
Q 003840 764 EGLIAALAVS---TETGYVASASHD 785 (792)
Q Consensus 764 ~~~V~sl~fs---pdg~~LaSgs~D 785 (792)
...+++++|. ++++.|+.++..
T Consensus 254 ~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 254 VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred cCCceEEEEecccCCCCEEEEECCC
Confidence 3568999998 888777766543
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.84 E-value=3.4e-07 Score=94.38 Aligned_cols=181 Identities=11% Similarity=0.083 Sum_probs=129.9
Q ss_pred CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE
Q 003840 556 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 635 (792)
Q Consensus 556 ~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~ 635 (792)
....|.|+ ++.++++.+.+|.|+++|+.+ ++.+..+.........+++ +++.+++....++.+.+||..+.+.+..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~T-gkv~~~~l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLES-AQPVWMERLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSC-SSCSEEEECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCC-CcEEeEECCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 34678887 456677778888999999998 5555555222222234555 4567777777899999999999999999
Q ss_pred eeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC--C---CCeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 003840 636 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH--T---KPIDSVCWDPSGELLASVSED-SVRVWTVGS 709 (792)
Q Consensus 636 ~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h--~---~~V~sv~~spdg~~Las~s~d-~I~IwDl~s 709 (792)
+........+.++++.|+++..++.|.++|.++.+.+.++... . ..++.+.|. +|++++....+ .|.+.|..+
T Consensus 132 i~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~T 210 (268)
T 3nok_A 132 TRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPAT 210 (268)
T ss_dssp EECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTT
T ss_pred EeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCC
Confidence 8765544555577888988888999999999999888877542 2 245667777 77666555444 999999988
Q ss_pred CCCcceEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 003840 710 GSEGECVHELSC-------------NGNKFHSCVFHPTYPSLLVIGCY 744 (792)
Q Consensus 710 ~~~~~~i~~~~~-------------~~~~i~si~fspdg~~L~sgs~d 744 (792)
+ +.+..+.. .....+.|+|+|+++.|++.+..
T Consensus 211 G---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 211 G---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp C---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred C---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 7 44444332 22457899999988777776654
No 254
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.84 E-value=1.6e-06 Score=92.63 Aligned_cols=230 Identities=9% Similarity=0.013 Sum_probs=141.9
Q ss_pred CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecc--------------------cCCCeEEEEEcCCCCeEEE
Q 003840 555 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--------------------HSASVMSLDFHPNKDDLIC 614 (792)
Q Consensus 555 ~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~--------------------h~~~V~sl~fspd~~~ll~ 614 (792)
....+++|.+++++|+++..++.|..||..+.. +..+.. ....+.+|++.+++..++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~- 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG--FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY- 95 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTC--EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCc--eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-
Confidence 345678899999888889899999999887522 222211 113578999997334455
Q ss_pred EEeCCCcEEEEEcCCCeeEEEe---e----CCeeEEEEec-CCCEEEEEEc-----------------CCeEEEEECCCC
Q 003840 615 SCDGDGEIRYWSINNGSCTRVF---K----GGTAQMRFQP-HLGRYLAAAA-----------------ENVVSILDAETQ 669 (792)
Q Consensus 615 sgs~Dg~I~iwdl~~~~~~~~~---~----~~~~~v~~sp-~~~~lla~s~-----------------dg~I~i~D~~t~ 669 (792)
.++..+.|..+|..++...... . .....+++.+ ++..+++... ++.|..||..++
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 4444555888887765432211 1 1245688888 7654444322 367999998877
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc----
Q 003840 670 ACRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC---- 743 (792)
Q Consensus 670 ~~~~~l~~h~~~V~sv~~spdg~~Las~s-~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~---- 743 (792)
+....... ......|+|++++++|+.+. .+ .|.+|++....... ...+..... ...+++.++|+++++...
T Consensus 176 ~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 176 ETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp EEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred EEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence 64433221 12346799999999666554 43 89999987532111 111111223 788999999986665544
Q ss_pred ------CCeEEEEECCCCcEE-EEccc----CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 744 ------YQSLELWNMSENKTM-TLTAH----EGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 744 ------dg~I~IwDl~~~~~~-~~~~h----~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.+.|..+|.. ++.+ .+... ...++++++ .++.++++...++.|.+++
T Consensus 253 ~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp STTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred cccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 3678888875 4444 33332 235777777 3565555555677777663
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.82 E-value=7.5e-06 Score=86.88 Aligned_cols=234 Identities=11% Similarity=0.031 Sum_probs=144.0
Q ss_pred eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC--cEE
Q 003840 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TVR 579 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg--~V~ 579 (792)
.+.+..+... .....++|+++|+++++...++.|..||.+.. ....+. ....+..|+|.++++++++..... .|.
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 3445555433 56889999999997777768899999998753 333332 345689999999998666554332 366
Q ss_pred EEeCCCCCceeEEec-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEe----------eC--CeeEEEE
Q 003840 580 VWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF----------KG--GTAQMRF 645 (792)
Q Consensus 580 IWdl~s~~~~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~----------~~--~~~~v~~ 645 (792)
.+|..+ +....... ........+++.++ ..++++...++.|+++|...++. +... .. ....+
T Consensus 99 ~~d~~~-g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-- 174 (306)
T 2p4o_A 99 SLVKSD-GTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-- 174 (306)
T ss_dssp EEECTT-SCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred EEcCCC-CeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence 667655 33222111 12233455565544 44555555688999999876532 1110 00 12223
Q ss_pred ecCCCEEEEEEc-CCeEEEEECCC-CeE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee
Q 003840 646 QPHLGRYLAAAA-ENVVSILDAET-QAC--RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 720 (792)
Q Consensus 646 sp~~~~lla~s~-dg~I~i~D~~t-~~~--~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~ 720 (792)
+++++.++++.. .+.|.+||+.. ++. ...+.. ......++++++|+++++.... .|.+||.. +. ...+..+.
T Consensus 175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~-~~~~~~~~ 251 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RS-TTIIAQAE 251 (306)
T ss_dssp EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CC-EEEEECGG
T ss_pred CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CC-EEEEeecc
Confidence 788887777665 67999999874 321 111111 1235678999999877666655 89999864 31 11132344
Q ss_pred cCCCceEEEEEe---CCCCEEEEEEcCC
Q 003840 721 CNGNKFHSCVFH---PTYPSLLVIGCYQ 745 (792)
Q Consensus 721 ~~~~~i~si~fs---pdg~~L~sgs~dg 745 (792)
......++|+|. ++++.|++++..+
T Consensus 252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred cccCCceEEEEecccCCCCEEEEECCCC
Confidence 344568999998 8988888877653
No 256
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.81 E-value=1.1e-07 Score=112.55 Aligned_cols=262 Identities=10% Similarity=0.054 Sum_probs=153.5
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEECCCCcee--EEec-cCCCCEEEEEECCCCCeEEEEeC-CCcEEE
Q 003840 517 CCHFSS-DGKLLATGGHDK-----------KAVLWHTDTLKSK--TNLE-EHSSLITDVRFSPSMPRLATSSF-DKTVRV 580 (792)
Q Consensus 517 ~lafsp-dg~~Lasgs~Dg-----------~I~vWdl~t~~~~--~~l~-~h~~~V~~i~fspdg~~Lasgs~-Dg~V~I 580 (792)
++++.+ +|++++.|+.+. .+.+||..+.+.. ..+. .+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888999887643 5889998876533 2232 23344556788899999999984 457999
Q ss_pred EeCCCCCceeEEecc-c-CCCeEEEEEcCCCCeEEEEEe-CC-----CcEEEEEcCCCeeEEEee-------CCeeEEEE
Q 003840 581 WDADNPGYSLRTFMG-H-SASVMSLDFHPNKDDLICSCD-GD-----GEIRYWSINNGSCTRVFK-------GGTAQMRF 645 (792)
Q Consensus 581 Wdl~s~~~~i~~~~~-h-~~~V~sl~fspd~~~ll~sgs-~D-----g~I~iwdl~~~~~~~~~~-------~~~~~v~~ 645 (792)
||..+... ..+.. + ...-.++++.++++ +++.|+ .+ ..+.+||..+.+....-. .......+
T Consensus 270 yd~~t~~W--~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~ 346 (656)
T 1k3i_A 270 YDSSSDSW--IPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 346 (656)
T ss_dssp EEGGGTEE--EECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred ecCcCCce--eECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccccee
Confidence 99986321 12111 1 11223455566665 555666 34 579999998877554310 00000111
Q ss_pred ecCCCEEEEEEcC---------CeEEEEECCCCeEEEEecCCC---------CCeEEEEEcC-CCCEEEEEeC-------
Q 003840 646 QPHLGRYLAAAAE---------NVVSILDAETQACRLSLQGHT---------KPIDSVCWDP-SGELLASVSE------- 699 (792)
Q Consensus 646 sp~~~~lla~s~d---------g~I~i~D~~t~~~~~~l~~h~---------~~V~sv~~sp-dg~~Las~s~------- 699 (792)
..++..++.++.+ ..+..||..+.........+. ..-.++.|.. +++++++|+.
T Consensus 347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~ 426 (656)
T 1k3i_A 347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 426 (656)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence 2333334444433 467888988775443322221 1234455543 6777777763
Q ss_pred --C---eEEEEECCCCCCcceEEEe--ecCCC-ceEEEEEeCCCCEEEEEEcC-----------CeEEEEECCCCcEEEE
Q 003840 700 --D---SVRVWTVGSGSEGECVHEL--SCNGN-KFHSCVFHPTYPSLLVIGCY-----------QSLELWNMSENKTMTL 760 (792)
Q Consensus 700 --d---~I~IwDl~s~~~~~~i~~~--~~~~~-~i~si~fspdg~~L~sgs~d-----------g~I~IwDl~~~~~~~~ 760 (792)
+ .|.+||..+.. ..... ..... ...++++.++++.+++|+.+ ..+.+||..+.+...+
T Consensus 427 ~~~~~~~v~~yd~~~~~---W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~ 503 (656)
T 1k3i_A 427 ATTNAHIITLGEPGTSP---NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 503 (656)
T ss_dssp CCCCEEEEECCSTTSCC---EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred cCCcceEEEcCCCCCCC---eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeec
Confidence 1 46677776542 21111 11122 23455677899999998864 4689999988775543
Q ss_pred cc---cCCCeEEEEEeCCCCEEEEEeC
Q 003840 761 TA---HEGLIAALAVSTETGYVASASH 784 (792)
Q Consensus 761 ~~---h~~~V~sl~fspdg~~LaSgs~ 784 (792)
.. ......+..+.+|+++++.||.
T Consensus 504 ~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 504 NPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCccccccHhhcCCCcEEEecCCC
Confidence 22 2223344556789999999885
No 257
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.78 E-value=6.8e-07 Score=105.86 Aligned_cols=254 Identities=13% Similarity=0.163 Sum_probs=156.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEeccCCC-CEEEEEECC--CCCeEEEEeC------CCcEEEEeCCCCCceeEEec
Q 003840 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSP--SMPRLATSSF------DKTVRVWDADNPGYSLRTFM 594 (792)
Q Consensus 524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~-~V~~i~fsp--dg~~Lasgs~------Dg~V~IWdl~s~~~~i~~~~ 594 (792)
+..|++++.|+.|+.+|.++|+.+..+..... ....+...| .+..+++++. +|.|+.||..+ ++.+..+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~~~ 195 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADT-GKLAWRFY 195 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT-CCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCC-CcEEEEec
Confidence 45788888999999999999999877764210 000111111 1335555543 58999999998 55554443
Q ss_pred cc--C-----------------------------CCeEEEEEcCCCCeEEEEEeCCC-------------------cEEE
Q 003840 595 GH--S-----------------------------ASVMSLDFHPNKDDLICSCDGDG-------------------EIRY 624 (792)
Q Consensus 595 ~h--~-----------------------------~~V~sl~fspd~~~ll~sgs~Dg-------------------~I~i 624 (792)
.. . .....+++.++.+ +++.+..++ .|..
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 11 0 0112467777755 455666555 4999
Q ss_pred EEcCCCeeEEEeeCC------------eeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEecCCCC---------
Q 003840 625 WSINNGSCTRVFKGG------------TAQMRFQPHLG---RYLAAAAENVVSILDAETQACRLSLQGHTK--------- 680 (792)
Q Consensus 625 wdl~~~~~~~~~~~~------------~~~v~~sp~~~---~lla~s~dg~I~i~D~~t~~~~~~l~~h~~--------- 680 (792)
+|.++++.+..+... .....+..++. .+++++.+|.++++|.++++.+..+.....
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~ 354 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA 354 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence 999999998877532 11122233543 477788899999999999998854432110
Q ss_pred ---C------------------------eEEEEEcCCCCEEEEEe-----------------------------------
Q 003840 681 ---P------------------------IDSVCWDPSGELLASVS----------------------------------- 698 (792)
Q Consensus 681 ---~------------------------V~sv~~spdg~~Las~s----------------------------------- 698 (792)
+ -..++++|+..+++...
T Consensus 355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~ 434 (668)
T 1kv9_A 355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA 434 (668)
T ss_dssp TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence 0 01267778766655421
Q ss_pred -C-CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCC-eEEEEEeC
Q 003840 699 -E-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL-IAALAVST 774 (792)
Q Consensus 699 -~-d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~-V~sl~fsp 774 (792)
. +.|+.||+.++ +.+....... ......+...+.++++++.|+.|++||.++++.+ .+...... ..-+.+..
T Consensus 435 ~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~ 510 (668)
T 1kv9_A 435 VVSGALLAWDPVKQ---KAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFEL 510 (668)
T ss_dssp GCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred CccceEEEEeCCCC---cEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEE
Confidence 2 26888999887 4444443322 2333445557888999999999999999999988 33322211 12344455
Q ss_pred CCC-EEEEEe
Q 003840 775 ETG-YVASAS 783 (792)
Q Consensus 775 dg~-~LaSgs 783 (792)
+|+ |++.++
T Consensus 511 ~G~~yva~~~ 520 (668)
T 1kv9_A 511 AGRQYVAIMA 520 (668)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 666 444443
No 258
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.78 E-value=1.7e-06 Score=88.28 Aligned_cols=191 Identities=16% Similarity=0.135 Sum_probs=134.6
Q ss_pred ceeEEeccCC--CCEEEEEECCCCCeEEEEeCC--CcEEEEeCCCCCceeEEecccCC-CeEEEEEcCCCCeEEEEEeCC
Q 003840 545 KSKTNLEEHS--SLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYSLRTFMGHSA-SVMSLDFHPNKDDLICSCDGD 619 (792)
Q Consensus 545 ~~~~~l~~h~--~~V~~i~fspdg~~Lasgs~D--g~V~IWdl~s~~~~i~~~~~h~~-~V~sl~fspd~~~ll~sgs~D 619 (792)
+.+.++ .|. ...-.+.|+. +.++.+.+.+ ..|+++|+.+ ++.+..+.-... .-..+++. ++.++...-.+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~t-gkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLET-GRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRN 84 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTT-CCEEEEEECCTTCCEEEEEEE--TTEEEEEESSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCC-CCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeC
Confidence 344445 343 4466889986 5555565654 4899999998 566655543222 22344444 56777777789
Q ss_pred CcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC-----CCeEEEEEcCCCCEE
Q 003840 620 GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-----KPIDSVCWDPSGELL 694 (792)
Q Consensus 620 g~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~-----~~V~sv~~spdg~~L 694 (792)
+.+.+||..+.+.+..+........+.++++.++++..++.|.++|.++.+.+.++.-.. ..++.+.|. +|+++
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly 163 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL 163 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred CEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence 999999999999999987655556666788888888889999999999998887776422 345667776 67666
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 003840 695 ASVSED-SVRVWTVGSGSEGECVHELSC-------------NGNKFHSCVFHPTYPSLLVIGCY 744 (792)
Q Consensus 695 as~s~d-~I~IwDl~s~~~~~~i~~~~~-------------~~~~i~si~fspdg~~L~sgs~d 744 (792)
+..-.. .|.+.|..++ +.+..+.. .....+.|+|+|+++.|++.+..
T Consensus 164 anvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 164 ANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 555444 9999999888 44444431 22357899999998888887764
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.77 E-value=1.8e-06 Score=100.50 Aligned_cols=261 Identities=10% Similarity=0.029 Sum_probs=158.3
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEeccCCCCE---------EEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecc
Q 003840 525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLI---------TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 595 (792)
Q Consensus 525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V---------~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~ 595 (792)
..|++++.++.|+.+|.++++.+-++....... ..+++ .+..|++++.|+.|..+|..+ ++.+-.+..
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~T-G~~~W~~~~ 145 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNT-GKVVWKKKF 145 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSS-CCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCC-CCEEeeecC
Confidence 356666664559999999999887776432210 11222 355788889999999999998 554444332
Q ss_pred cC----CCeE-EEEEcC---CCCeEEEEEe------CCCcEEEEEcCCCeeEEEeeCCe---------------------
Q 003840 596 HS----ASVM-SLDFHP---NKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGT--------------------- 640 (792)
Q Consensus 596 h~----~~V~-sl~fsp---d~~~ll~sgs------~Dg~I~iwdl~~~~~~~~~~~~~--------------------- 640 (792)
.. ..+. ...+.. ++..++++++ .++.|+.+|.++++.+..+....
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 21 0111 111111 1222444554 37899999999999887654310
Q ss_pred -----------------------eEEEEecCCCEEEEEEc--------------------C----CeEEEEECCCCeEEE
Q 003840 641 -----------------------AQMRFQPHLGRYLAAAA--------------------E----NVVSILDAETQACRL 673 (792)
Q Consensus 641 -----------------------~~v~~sp~~~~lla~s~--------------------d----g~I~i~D~~t~~~~~ 673 (792)
..+++.+..+.++++.. | +.|..+|.++++.+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 12456667788887774 2 589999999999998
Q ss_pred EecC--CC--------CCeEEEEEc-CCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeecCC-------------C-
Q 003840 674 SLQG--HT--------KPIDSVCWD-PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG-------------N- 724 (792)
Q Consensus 674 ~l~~--h~--------~~V~sv~~s-pdg~---~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~-------------~- 724 (792)
.+.. |. .++. +... .+|+ +|+.++.+ .++++|..+++ .+..+.... .
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p 381 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK---LQNAFPFVDNITWASHIDLKTGRP 381 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSSCCCSEEEECTTTCCE
T ss_pred EEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC---EecccccccCccccccccccCCCE
Confidence 8753 32 1221 2222 4674 67777777 99999998874 332222111 0
Q ss_pred -------------------c------------eEEEEEeCCCCEEEEEE-------------------------------
Q 003840 725 -------------------K------------FHSCVFHPTYPSLLVIG------------------------------- 742 (792)
Q Consensus 725 -------------------~------------i~si~fspdg~~L~sgs------------------------------- 742 (792)
. ...++++|+...+++..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~ 461 (582)
T 1flg_A 382 VEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMY 461 (582)
T ss_dssp EECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESC
T ss_pred eEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCC
Confidence 0 01345666655555543
Q ss_pred --cCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 743 --CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 743 --~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.+|.|..||+.+++.+-...+...+..-.+...+.+|+.++.||.|+.||
T Consensus 462 ~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 462 DDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp SSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred CCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence 25789999999999873322222333222233466788899999999886
No 260
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.77 E-value=8e-07 Score=91.53 Aligned_cols=196 Identities=15% Similarity=0.166 Sum_probs=133.6
Q ss_pred cceeeeeeeecCCCC--eEEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeEEeccCCCC-EEEEEECCCCCeEEEEe-
Q 003840 500 FSFKEANSVRASTSK--VICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSS- 573 (792)
Q Consensus 500 ~~~~~~~~l~~H~~~--V~~lafspdg~~Lasgs~Dg--~I~vWdl~t~~~~~~l~~h~~~-V~~i~fspdg~~Lasgs- 573 (792)
..++.+.++ .|... .-.+.|+ ++.++.+.+.+| .|+++|+++++.+..+...... -..|++ ++..|+.+.
T Consensus 29 ~~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw 104 (262)
T 3nol_A 29 YDYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTW 104 (262)
T ss_dssp EEEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEES
T ss_pred cceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEe
Confidence 344555666 44433 3678998 676667777666 8999999999999888654322 123444 344555554
Q ss_pred CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC--------eeEEEE
Q 003840 574 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--------TAQMRF 645 (792)
Q Consensus 574 ~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~--------~~~v~~ 645 (792)
.++.+.+||..+ .+.+.++.... .-..++ +++..++++- .++.|.++|..+.+.+..+... .+.+.|
T Consensus 105 ~~~~v~v~D~~t-~~~~~ti~~~~-eG~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~ 179 (262)
T 3nol_A 105 KNGLGFVWNIRN-LRQVRSFNYDG-EGWGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW 179 (262)
T ss_dssp SSSEEEEEETTT-CCEEEEEECSS-CCCCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE
T ss_pred eCCEEEEEECcc-CcEEEEEECCC-CceEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE
Confidence 588999999998 66677666432 223444 5667677554 4788999999999888776431 233566
Q ss_pred ecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCC------------CCCeEEEEEcCCCCEEEEEeCCeEEEEE
Q 003840 646 QPHLGRYLAAAA-ENVVSILDAETQACRLSLQGH------------TKPIDSVCWDPSGELLASVSEDSVRVWT 706 (792)
Q Consensus 646 sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h------------~~~V~sv~~spdg~~Las~s~d~I~IwD 706 (792)
. ++++++... ++.|.+.|.++++++..+... ....+.|+|+|+++.|++.+..-=++|.
T Consensus 180 ~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~e 251 (262)
T 3nol_A 180 V--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFE 251 (262)
T ss_dssp E--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred E--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEE
Confidence 5 456776664 789999999999998887642 1346889999999988888876333443
No 261
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.74 E-value=3.5e-05 Score=82.30 Aligned_cols=226 Identities=8% Similarity=-0.050 Sum_probs=144.4
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEE-EeCCCcEEEEeCCCC---CceeEEecccCCCeE
Q 003840 526 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKTVRVWDADNP---GYSLRTFMGHSASVM 601 (792)
Q Consensus 526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Las-gs~Dg~V~IWdl~s~---~~~i~~~~~h~~~V~ 601 (792)
+|+.+. ...|+..|+++.+....+. ....+..++|++.+..|+. -..++.|..++++.. ......+........
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344443 3568999998876655554 3456889999986655554 455688999998751 122222322234567
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcC--CeEEEEECCCCeEEEEec
Q 003840 602 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE--NVVSILDAETQACRLSLQ 676 (792)
Q Consensus 602 sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~d--g~I~i~D~~t~~~~~~l~ 676 (792)
.|++.+.+..++++-..++.|.++|+........+. .....+++.|.+++++.+... +.|..+++..........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 899987777787777778999999987654433333 245678999988888777653 689999886543332223
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 003840 677 GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS 753 (792)
Q Consensus 677 ~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~ 753 (792)
..-.....|+|++++..|+.+... .|..+|+... ....+............+++. +..|+++. ..+.|..+|..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCC
Confidence 334567899999987777666544 8999998742 223332222223346677774 34555554 45689999876
Q ss_pred CCc
Q 003840 754 ENK 756 (792)
Q Consensus 754 ~~~ 756 (792)
+++
T Consensus 238 ~g~ 240 (316)
T 1ijq_A 238 TGS 240 (316)
T ss_dssp TCC
T ss_pred CCc
Confidence 554
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.73 E-value=1.4e-06 Score=101.16 Aligned_cols=250 Identities=10% Similarity=0.053 Sum_probs=151.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEeccCC----CCEEE-EEECCCCCeEEEEeC------CCcEEEEeCCCCCceeEE
Q 003840 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITD-VRFSPSMPRLATSSF------DKTVRVWDADNPGYSLRT 592 (792)
Q Consensus 524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~----~~V~~-i~fspdg~~Lasgs~------Dg~V~IWdl~s~~~~i~~ 592 (792)
+..|++++.|+.|+.+|.++++.+-.+.... ..+.+ .... ++ .+++++. ++.|+.+|..+ ++.+..
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKT-GELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTT-CCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCC-CcEEEE
Confidence 4578888889999999999999887765321 01111 1111 33 5566554 79999999998 454444
Q ss_pred ecccCCC-------------------------------------e-EEEEEcCCCCeEEEEEeCC---------------
Q 003840 593 FMGHSAS-------------------------------------V-MSLDFHPNKDDLICSCDGD--------------- 619 (792)
Q Consensus 593 ~~~h~~~-------------------------------------V-~sl~fspd~~~ll~sgs~D--------------- 619 (792)
+...... + ..+++.+....++ .+..+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy-~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFY-YGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEE-EECCCCccccCCccCCCcee
Confidence 3321100 0 1355666555444 44321
Q ss_pred -CcEEEEEcCCCeeEEEeeCC---------eeE-EEE--ecCCC---EEEEEEcCCeEEEEECCCCeEEEEecCCC----
Q 003840 620 -GEIRYWSINNGSCTRVFKGG---------TAQ-MRF--QPHLG---RYLAAAAENVVSILDAETQACRLSLQGHT---- 679 (792)
Q Consensus 620 -g~I~iwdl~~~~~~~~~~~~---------~~~-v~~--sp~~~---~lla~s~dg~I~i~D~~t~~~~~~l~~h~---- 679 (792)
+.|..+|.++++.+..+... ... +.+ ..+++ .+++++.+|.++++|.++++.+..+....
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 35999999999988776532 111 222 23553 35567779999999999999887764321
Q ss_pred ---------CCe--------------------------EEEEEcCCCCEEEEEe--------------------------
Q 003840 680 ---------KPI--------------------------DSVCWDPSGELLASVS-------------------------- 698 (792)
Q Consensus 680 ---------~~V--------------------------~sv~~spdg~~Las~s-------------------------- 698 (792)
.++ ..++|+|+..+|++.+
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 111 2357888777666543
Q ss_pred -----------CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccC-
Q 003840 699 -----------ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE- 764 (792)
Q Consensus 699 -----------~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~- 764 (792)
.+ .|..||+.++ +.+..+.... .+....+...+..+++++.|+.|++||.++++++ .+....
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG---~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 506 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTC---CEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eccCccccCCCCCCeEEEEECCCC---CEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCC
Confidence 23 7888888776 3444433222 2222333445667888999999999999999988 333221
Q ss_pred CCeEEEEEeCCCCEEEE
Q 003840 765 GLIAALAVSTETGYVAS 781 (792)
Q Consensus 765 ~~V~sl~fspdg~~LaS 781 (792)
.....+.+..+|+.++.
T Consensus 507 ~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 507 GIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cEeeeEEEEECCEEEEE
Confidence 11222345567765443
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.72 E-value=1.3e-05 Score=86.98 Aligned_cols=237 Identities=10% Similarity=0.002 Sum_probs=151.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCCCce
Q 003840 511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYS 589 (792)
Q Consensus 511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~V~IWdl~s~~~~ 589 (792)
+.+..+|.+..++. +|+.+. ...|+..+++.......+. ....+..++|++....|+.+ ...+.|+.++++.. ..
T Consensus 32 ~~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~-~~ 107 (349)
T 3v64_C 32 RPDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS-NV 107 (349)
T ss_dssp CTTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SC
T ss_pred CCCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCC-Cc
Confidence 34556677776644 444443 4568888887665544444 34458899999766555544 56788999998863 32
Q ss_pred eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc-C-CeEEEE
Q 003840 590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA-E-NVVSIL 664 (792)
Q Consensus 590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~-d-g~I~i~ 664 (792)
...+.........|++.+.+..++++-...+.|.++++........+. .....+++.|.++.++.+.. . +.|..+
T Consensus 108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~ 187 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 187 (349)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence 233332334567899988777788787778899999987654333333 24567899998888777665 3 789999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003840 665 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 742 (792)
Q Consensus 665 D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs 742 (792)
+++.......+...-.....|+|++++..|+.+... .|..+|+.... ... .+.........+++. . ..|+++.
T Consensus 188 ~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~-~~~--~~~~~~~~P~giav~-~-~~ly~td 262 (349)
T 3v64_C 188 SMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKA--VISQGLPHPFAITVF-E-DSLYWTD 262 (349)
T ss_dssp ETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE--EECSSCSSEEEEEEE-T-TEEEEEE
T ss_pred eCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc-eEE--EEeCCCCCceEEEEE-C-CEEEEec
Confidence 887543333223334457899999877766666554 89999986432 121 222234456777773 3 3455554
Q ss_pred -cCCeEEEEECCCCc
Q 003840 743 -CYQSLELWNMSENK 756 (792)
Q Consensus 743 -~dg~I~IwDl~~~~ 756 (792)
..+.|..+|..+++
T Consensus 263 ~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 263 WHTKSINSANKFTGK 277 (349)
T ss_dssp TTTTEEEEEETTTCC
T ss_pred CCCCeEEEEEccCCC
Confidence 45688888855544
No 264
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.67 E-value=4.2e-06 Score=85.40 Aligned_cols=191 Identities=12% Similarity=0.085 Sum_probs=129.8
Q ss_pred cceeeeeeeecCCCC--eEEEEEcCCCCEEEEEeCC--CeEEEEECCCCceeEEeccCCCC-EEEEEECCCCCeEEEEeC
Q 003840 500 FSFKEANSVRASTSK--VICCHFSSDGKLLATGGHD--KKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSSF 574 (792)
Q Consensus 500 ~~~~~~~~l~~H~~~--V~~lafspdg~~Lasgs~D--g~I~vWdl~t~~~~~~l~~h~~~-V~~i~fspdg~~Lasgs~ 574 (792)
..++.+..+ .|... +-.+.|+. +.++.+.+.+ ..|+++|+++++.+..+...... -..+++. ++++++..-.
T Consensus 7 ~~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~ 83 (243)
T 3mbr_X 7 QGYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWR 83 (243)
T ss_dssp CCEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESS
T ss_pred cceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEee
Confidence 345556666 45433 55889986 5555565654 48999999999999887643322 1234443 2334444556
Q ss_pred CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--------CeeEEEEe
Q 003840 575 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQ 646 (792)
Q Consensus 575 Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------~~~~v~~s 646 (792)
++.+.+||..+ .+.+.++.... .-..++ +++..++++ ..++.|.++|..+.+.++.+.- ..+.+.+.
T Consensus 84 ~~~v~v~D~~t-l~~~~ti~~~~-~Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 84 NHEGFVYDLAT-LTPRARFRYPG-EGWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV 158 (243)
T ss_dssp SSEEEEEETTT-TEEEEEEECSS-CCCEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred CCEEEEEECCc-CcEEEEEeCCC-CceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe
Confidence 88999999988 66677766433 223554 556667755 4588999999999988877653 22334444
Q ss_pred cCCCEEEEEE-cCCeEEEEECCCCeEEEEecCC-------------CCCeEEEEEcCCCCEEEEEeCC
Q 003840 647 PHLGRYLAAA-AENVVSILDAETQACRLSLQGH-------------TKPIDSVCWDPSGELLASVSED 700 (792)
Q Consensus 647 p~~~~lla~s-~dg~I~i~D~~t~~~~~~l~~h-------------~~~V~sv~~spdg~~Las~s~d 700 (792)
++++++.. .++.|.+.|.++++++..+... ..-.+.|+|+|+++.|++.+..
T Consensus 159 --~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 159 --NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp --TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred --CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 56677666 4789999999999998877521 1246889999998888777766
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.66 E-value=1.3e-05 Score=88.18 Aligned_cols=235 Identities=10% Similarity=-0.004 Sum_probs=150.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEE-EEeCCCcEEEEeCCCCCceeE
Q 003840 513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLR 591 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~La-sgs~Dg~V~IWdl~s~~~~i~ 591 (792)
+...|.+..+++ +|+.+. ...|+.++++.......+. ....+..++|.+.+..|+ +-...+.|+.|+++. .....
T Consensus 77 d~~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g-~~~~~ 152 (386)
T 3v65_B 77 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNG-SNVEE 152 (386)
T ss_dssp TSSCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CCEEE
T ss_pred CCCeECCccccc-eeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCC-CCcEE
Confidence 344566666643 444443 4678888988765544444 345688999997655555 445678899999876 33223
Q ss_pred EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc-C-CeEEEEEC
Q 003840 592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA-E-NVVSILDA 666 (792)
Q Consensus 592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~-d-g~I~i~D~ 666 (792)
.+.........|++.+.+..++++-...+.|.++++........+. .....+++.|.++.++.+.. . +.|..+++
T Consensus 153 ~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 3333334556788988777788777778889999887554333333 23567899998888877765 3 68999998
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-c
Q 003840 667 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-C 743 (792)
Q Consensus 667 ~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~ 743 (792)
............-.....|+|++++..|+.+... .|..+|+.... ....+.........+++. .+ .|+++. .
T Consensus 233 dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~-~ly~td~~ 307 (386)
T 3v65_B 233 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-ED-SLYWTDWH 307 (386)
T ss_dssp TSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TT-EEEEEETT
T ss_pred CCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CC-EEEEeeCC
Confidence 7654433333334557899999877766666544 89999986431 111222234456777773 33 455444 4
Q ss_pred CCeEEEEECCCCc
Q 003840 744 YQSLELWNMSENK 756 (792)
Q Consensus 744 dg~I~IwDl~~~~ 756 (792)
.+.|..+|..+++
T Consensus 308 ~~~V~~~~~~~G~ 320 (386)
T 3v65_B 308 TKSINSANKFTGK 320 (386)
T ss_dssp TTEEEEEETTTCC
T ss_pred CCeEEEEECCCCc
Confidence 5688888865554
No 266
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.64 E-value=1.3e-06 Score=105.06 Aligned_cols=238 Identities=9% Similarity=0.064 Sum_probs=134.7
Q ss_pred CeEEEEEc-CCCCEEEEEeC-CC----eEEEEECCCC-ceeE-EeccCCCCEEEEEECCCCCeEEEEeCC-----CcEEE
Q 003840 514 KVICCHFS-SDGKLLATGGH-DK----KAVLWHTDTL-KSKT-NLEEHSSLITDVRFSPSMPRLATSSFD-----KTVRV 580 (792)
Q Consensus 514 ~V~~lafs-pdg~~Lasgs~-Dg----~I~vWdl~t~-~~~~-~l~~h~~~V~~i~fspdg~~Lasgs~D-----g~V~I 580 (792)
.+...+|| |||++||.+.. +| .|+++|++++ +.+. .+.. ....++|+||++.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998887643 22 4999999998 6321 1211 13468999999988877765 25888
Q ss_pred EeCCCCCce-eEEec-ccCCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCC--ee-EEEeeCCeeEEEEecC---CC
Q 003840 581 WDADNPGYS-LRTFM-GHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNG--SC-TRVFKGGTAQMRFQPH---LG 650 (792)
Q Consensus 581 Wdl~s~~~~-i~~~~-~h~~~V~sl~fspd~~~ll~sgs~--Dg~I~iwdl~~~--~~-~~~~~~~~~~v~~sp~---~~ 650 (792)
|++.++... ...+. ........+.|+||++.++++... ...|+++|+.++ .. +..+........|+++ ++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 888763221 22322 233456788999999988877643 346888898875 22 1333221122223333 67
Q ss_pred EEEEEEcC-----CeEEEEECCCCeEEEE-ecCCCC--CeEEEEEcCCCCEE-EEEeCC---eEEEEEC-------CCCC
Q 003840 651 RYLAAAAE-----NVVSILDAETQACRLS-LQGHTK--PIDSVCWDPSGELL-ASVSED---SVRVWTV-------GSGS 711 (792)
Q Consensus 651 ~lla~s~d-----g~I~i~D~~t~~~~~~-l~~h~~--~V~sv~~spdg~~L-as~s~d---~I~IwDl-------~s~~ 711 (792)
.|+..+.. ..|.++|+.+...... +..+.. .+..+.+. ++.| ++...+ .|.++|+ ..+.
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~ 409 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGT 409 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTTT
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCCc
Confidence 76666543 3788888875211111 222333 34455554 4444 444444 5777776 2221
Q ss_pred CcceEEEeecCC-CceEEEEE----eCCCCE-EEEEEcC---CeEEEEECCCCcEEE
Q 003840 712 EGECVHELSCNG-NKFHSCVF----HPTYPS-LLVIGCY---QSLELWNMSENKTMT 759 (792)
Q Consensus 712 ~~~~i~~~~~~~-~~i~si~f----spdg~~-L~sgs~d---g~I~IwDl~~~~~~~ 759 (792)
.+..+.... ..+..+.+ ++++.. +++.+.. ..|+.+|+.+++...
T Consensus 410 ---~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~ 463 (751)
T 2xe4_A 410 ---GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTA 463 (751)
T ss_dssp ---CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEE
T ss_pred ---cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEE
Confidence 022222111 12233322 345554 4444433 368888888776543
No 267
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.64 E-value=3.7e-06 Score=97.76 Aligned_cols=253 Identities=12% Similarity=0.057 Sum_probs=150.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEeccCCC----CEE---EEEEC-CCCC-eEEEEe------CCCcEEEEeCCCCCc
Q 003840 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS----LIT---DVRFS-PSMP-RLATSS------FDKTVRVWDADNPGY 588 (792)
Q Consensus 524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~----~V~---~i~fs-pdg~-~Lasgs------~Dg~V~IWdl~s~~~ 588 (792)
+..|++++.|+.|+.+|.++|+.+-.+..... .+. .+.=. .+++ .|++++ .++.|+.+|..+ ++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t-G~ 195 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT-GE 195 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT-CC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC-CC
Confidence 45788888999999999999998877653221 111 11111 1233 566655 378999999988 44
Q ss_pred eeEEecccCCCe-----------------------------------------EEEEEcCCCCeEEEEEe----------
Q 003840 589 SLRTFMGHSASV-----------------------------------------MSLDFHPNKDDLICSCD---------- 617 (792)
Q Consensus 589 ~i~~~~~h~~~V-----------------------------------------~sl~fspd~~~ll~sgs---------- 617 (792)
.+-........+ ..+++.+....+++..+
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 443332110000 12455566554443332
Q ss_pred --C-------C----CcEEEEEcCCCeeEEEeeCC---------e-eEEEEe---cCCC---EEEEEEcCCeEEEEECCC
Q 003840 618 --G-------D----GEIRYWSINNGSCTRVFKGG---------T-AQMRFQ---PHLG---RYLAAAAENVVSILDAET 668 (792)
Q Consensus 618 --~-------D----g~I~iwdl~~~~~~~~~~~~---------~-~~v~~s---p~~~---~lla~s~dg~I~i~D~~t 668 (792)
. | +.|..+|.++++.+..+... . ..+.+. .+++ .+++++.+|.|+++|.++
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 1 2 68999999999998877531 1 112222 3453 566778899999999999
Q ss_pred CeEEEEecCCCC--C-------------------------------------------eEEEEEcCCCCEEEEEe-----
Q 003840 669 QACRLSLQGHTK--P-------------------------------------------IDSVCWDPSGELLASVS----- 698 (792)
Q Consensus 669 ~~~~~~l~~h~~--~-------------------------------------------V~sv~~spdg~~Las~s----- 698 (792)
++.+..+..... . -..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 998876654310 0 01345666555444432
Q ss_pred ----------------------------CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003840 699 ----------------------------ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 749 (792)
Q Consensus 699 ----------------------------~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~I 749 (792)
.+ .|..||+.++ +.+....... .+....+...+..+++++.|+.|+.
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG---KVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC---CEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC---CEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEE
Confidence 13 6888888877 3443333221 2222222235667888999999999
Q ss_pred EECCCCcEEEEcccCCCeE--EEEEeCCCC-EEEE
Q 003840 750 WNMSENKTMTLTAHEGLIA--ALAVSTETG-YVAS 781 (792)
Q Consensus 750 wDl~~~~~~~~~~h~~~V~--sl~fspdg~-~LaS 781 (792)
||.++++.+........+. -+.|..+|+ ||++
T Consensus 512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~ 546 (582)
T 1flg_A 512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV 546 (582)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EECCCCCEEEEecCCCCcccCceEEEECCEEEEEE
Confidence 9999999883322222222 366667887 4443
No 268
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.62 E-value=6.1e-06 Score=85.00 Aligned_cols=176 Identities=10% Similarity=0.038 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC-CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003840 515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 593 (792)
Q Consensus 515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~-~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~ 593 (792)
...+.|+ ++.++++.+.+|.|+++|+++++.+..+ -... .-..+++.. +++++..-.++.+.+||..+ .+.+.++
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~T-l~~~~ti 132 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMP-PQRERTT 132 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTT-TEEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCc-CcEEEEE
Confidence 4678887 4566777778889999999999998887 3222 123456543 23444455688999999998 6667776
Q ss_pred cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--------CeeEEEEecCCCEEEEEEc-CCeEEEE
Q 003840 594 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPHLGRYLAAAA-ENVVSIL 664 (792)
Q Consensus 594 ~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------~~~~v~~sp~~~~lla~s~-dg~I~i~ 664 (792)
... ..-..++ +++..++++ ..++.|.++|..+.+.+..+.- ..+.+.|. ++++++... ++.|.+.
T Consensus 133 ~~~-~eGwGLt--~Dg~~L~vS-dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 133 RYS-GEGWGLC--YWNGKLVRS-DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEI 206 (268)
T ss_dssp ECS-SCCCCEE--EETTEEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEE
T ss_pred eCC-CceeEEe--cCCCEEEEE-CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEE
Confidence 643 2224555 456666655 4589999999999998877653 22345555 446776664 7899999
Q ss_pred ECCCCeEEEEecCC-------------CCCeEEEEEcCCCCEEEEEeCC
Q 003840 665 DAETQACRLSLQGH-------------TKPIDSVCWDPSGELLASVSED 700 (792)
Q Consensus 665 D~~t~~~~~~l~~h-------------~~~V~sv~~spdg~~Las~s~d 700 (792)
|.++++++..+... ..-.+.|+|+|+++.|++.+..
T Consensus 207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 99999998877532 1356889999987766666655
No 269
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.62 E-value=3.8e-06 Score=97.80 Aligned_cols=248 Identities=13% Similarity=0.088 Sum_probs=147.5
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEeccCC----CCEEE-EEECCCCCeEEEEe------CCCcEEEEeCCCCCceeEEec
Q 003840 526 LLATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITD-VRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRTFM 594 (792)
Q Consensus 526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~----~~V~~-i~fspdg~~Lasgs------~Dg~V~IWdl~s~~~~i~~~~ 594 (792)
+|++++.|+.|+.+|.++|+.+-...... ..+++ ..+ .++ .|++++ .+|.|+.||..+ ++.+-.+.
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~T-G~~~W~~~ 199 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKT-GEQVWRAY 199 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTT-CCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCC-CcEEEEEc
Confidence 38888899999999999999887654322 01111 111 134 555555 389999999998 45444433
Q ss_pred ccCCC-------------------------------------e-EEEEEcCCCCeEEEEEeCC----------------C
Q 003840 595 GHSAS-------------------------------------V-MSLDFHPNKDDLICSCDGD----------------G 620 (792)
Q Consensus 595 ~h~~~-------------------------------------V-~sl~fspd~~~ll~sgs~D----------------g 620 (792)
..... + ..+++.+... +++.+..+ +
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~ 278 (599)
T 1w6s_A 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTM 278 (599)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCccccc
Confidence 21110 0 1345555555 44455444 4
Q ss_pred cEEEEEcCCCeeEEEeeCCe----------eEEEEe---cCC---CEEEEEEcCCeEEEEECCCCeEEEEecCCC-----
Q 003840 621 EIRYWSINNGSCTRVFKGGT----------AQMRFQ---PHL---GRYLAAAAENVVSILDAETQACRLSLQGHT----- 679 (792)
Q Consensus 621 ~I~iwdl~~~~~~~~~~~~~----------~~v~~s---p~~---~~lla~s~dg~I~i~D~~t~~~~~~l~~h~----- 679 (792)
.|..+|.++++.+..+.... ..+.+. .++ ..++.++.+|.|+++|.++++.+.......
T Consensus 279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~ 358 (599)
T 1w6s_A 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF 358 (599)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred eEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccc
Confidence 89999999999987775421 112222 345 245557789999999999999887654211
Q ss_pred --------CCe--------------------------EEEEEcCCCCEEEEEe---------------------------
Q 003840 680 --------KPI--------------------------DSVCWDPSGELLASVS--------------------------- 698 (792)
Q Consensus 680 --------~~V--------------------------~sv~~spdg~~Las~s--------------------------- 698 (792)
.++ ..++|+|+..+|++..
T Consensus 359 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 438 (599)
T 1w6s_A 359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM 438 (599)
T ss_dssp EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred cccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccccee
Confidence 111 2356777766655432
Q ss_pred ------------CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccC
Q 003840 699 ------------ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE 764 (792)
Q Consensus 699 ------------~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~ 764 (792)
.. .|..||+.++ +.+...... .....-.+...+..+++++.|+.|+.||.++++++ .+....
T Consensus 439 ~~~p~~~~~~~~~~G~l~A~D~~tG---~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 439 YPGPKGDRQNYEGLGQIKAYNAITG---DYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp EECTTSBTTTTBCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccCCcCCcccCCCcCeEEEEECCCC---CEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCC
Confidence 12 5677777666 333333211 11111123335677888999999999999999988 333222
Q ss_pred -CCeEEEEEeCCCC-EEEE
Q 003840 765 -GLIAALAVSTETG-YVAS 781 (792)
Q Consensus 765 -~~V~sl~fspdg~-~LaS 781 (792)
....-+.|..+|+ ||++
T Consensus 515 g~~~~P~~y~~~G~qyv~~ 533 (599)
T 1w6s_A 515 GAIGYPMTYTHKGTQYVAI 533 (599)
T ss_dssp CCCSCCEEEEETTEEEEEE
T ss_pred CcEeccEEEEeCCEEEEEE
Confidence 2222355566776 4444
No 270
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.57 E-value=7.5e-05 Score=82.60 Aligned_cols=226 Identities=8% Similarity=-0.054 Sum_probs=147.8
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCCC---ceeEEecccCCCeE
Q 003840 526 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPG---YSLRTFMGHSASVM 601 (792)
Q Consensus 526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~V~IWdl~s~~---~~i~~~~~h~~~V~ 601 (792)
+|+.+. ...|+..+++.......+ .....+..|+|++.+..|+.+ ...+.|+.++++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 444443 468999998876554444 345678999999866655555 456789999987421 12233333445678
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEec
Q 003840 602 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQ 676 (792)
Q Consensus 602 sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~--dg~I~i~D~~t~~~~~~l~ 676 (792)
.|++.+.+..|+++-...+.|.+.+++.......+.. ....+++.|.+++++.+.. .+.|..+++........+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 8999887777887877788999999986654444442 3567899998888887764 3789999987654444344
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 003840 677 GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS 753 (792)
Q Consensus 677 ~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~ 753 (792)
..-.....|++++++..|+.+... .|..+|+... ....+............+++ ++..|+... ..+.|..+|..
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEE--ETTEEEEEESSSCSEEEEESS
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEE--eCCEEEEecCCCCeEEEEEcC
Confidence 344567899999988777766654 8999998643 22233222222334556666 344555554 44689889866
Q ss_pred CCc
Q 003840 754 ENK 756 (792)
Q Consensus 754 ~~~ 756 (792)
+++
T Consensus 320 ~G~ 322 (400)
T 3p5b_L 320 TGS 322 (400)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 271
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.56 E-value=1.5e-05 Score=89.11 Aligned_cols=231 Identities=10% Similarity=0.059 Sum_probs=137.3
Q ss_pred CEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC----cEEEEEcCCC
Q 003840 556 LITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNG 630 (792)
Q Consensus 556 ~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg----~I~iwdl~~~ 630 (792)
....|+|+| ++..|+++...+.|+++|++. ..+..+.........|+|+++++.++++...++ .+.+++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~--~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK--EYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTT--TEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCC--CEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 457889998 456677766668899999875 334444445566889999999887776665333 2333443 23
Q ss_pred eeE--EEe--eCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCC--eE
Q 003840 631 SCT--RVF--KGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED--SV 702 (792)
Q Consensus 631 ~~~--~~~--~~~~~~v~~sp~~~~lla~s-~dg~I~i~D~~t~~~~~~l~-~h~~~V~sv~~spdg~~Las~s~d--~I 702 (792)
... ..+ ......++++|+.+.++++. .++.|..||...+....... ........|+|+|+|++|+.+... .|
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 221 222 23456788999656666555 57899999998776522222 122456789999999966665544 88
Q ss_pred EEEECCCCC-CcceEEEeecC---------------CCceE-EEEEe--------CCCCEEEEEE-cCCeEEEEECCCCc
Q 003840 703 RVWTVGSGS-EGECVHELSCN---------------GNKFH-SCVFH--------PTYPSLLVIG-CYQSLELWNMSENK 756 (792)
Q Consensus 703 ~IwDl~s~~-~~~~i~~~~~~---------------~~~i~-si~fs--------pdg~~L~sgs-~dg~I~IwDl~~~~ 756 (792)
.+|+..... ....+..+.+. -.... .+++. +++. |+++. ..+.|+.++ .++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEEC-TTSE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEEC-CCCc
Confidence 888765321 00011111111 01123 45553 2344 55554 456899998 4555
Q ss_pred EEEEccc------------------CCCeEEEEEeCC-CCEEEEEeCCCcEEEe
Q 003840 757 TMTLTAH------------------EGLIAALAVSTE-TGYVASASHDKFVKLW 791 (792)
Q Consensus 757 ~~~~~~h------------------~~~V~sl~fspd-g~~LaSgs~DG~I~IW 791 (792)
...+.+. -.....|+++++ +.++++-...+.|+.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 5544332 125789999995 5444444445677765
No 272
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.52 E-value=0.00012 Score=78.56 Aligned_cols=266 Identities=10% Similarity=0.017 Sum_probs=147.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec----cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 587 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~----~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~ 587 (792)
...+.+|.|..++..+|+ +.+|.|. +..+.++.-..+. .....+.+|.|.+ + .+++++.++.|+. ....+
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~--S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH--TTDGG 108 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE--ESSTT
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE--ECCCC
Confidence 447999999888877775 4577653 3344443322221 2345689999976 3 4444556664433 33334
Q ss_pred ceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----eCCeeEEEEecCCCEEEEEEcCCe
Q 003840 588 YSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRYLAAAAENV 660 (792)
Q Consensus 588 ~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~sp~~~~lla~s~dg~ 660 (792)
....... .+...+..|.+.+++ .+++++ .+|.|+. ....++.-... ...+..+.+.+++..+ +++.++.
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~-~~g~~G~ 184 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYV-AVSSRGS 184 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEE-EEETTSS
T ss_pred CCceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEE-EEECCCc
Confidence 4333332 233567888877664 455444 4565432 22223322222 2345667788875544 5555555
Q ss_pred EEEE-EC--CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEe-ecCCCceEEEEEeCCCC
Q 003840 661 VSIL-DA--ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYP 736 (792)
Q Consensus 661 I~i~-D~--~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~-~~~~~~i~si~fspdg~ 736 (792)
|+.- |. .+.+.+. ......+..+.+.+++.+++++..+.+++++...+.....+..- ......+..+++.+++.
T Consensus 185 ~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~ 262 (327)
T 2xbg_A 185 FYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE 262 (327)
T ss_dssp EEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC
T ss_pred EEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE
Confidence 5443 42 3334432 23456788999999998776665557666642212111111100 01223578888988776
Q ss_pred EEEEEEcCCeEEEEECCCCcEEE-Ec---ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 737 SLLVIGCYQSLELWNMSENKTMT-LT---AHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 737 ~L~sgs~dg~I~IwDl~~~~~~~-~~---~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.++ ++.++.| ++..+.++... +. .....+.++.|.+++ .+++++.+|.|..++
T Consensus 263 ~~~-~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 263 VWL-AGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EEE-EESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred EEE-EeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 544 4556767 45556565443 22 134568889997555 466677899887664
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.51 E-value=0.00021 Score=73.68 Aligned_cols=200 Identities=10% Similarity=0.055 Sum_probs=135.5
Q ss_pred eeeecCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeEEecc-CCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003840 506 NSVRASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~La-sgs~Dg~I~vWdl~t~~~~~~l~~-h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl 583 (792)
+.+.+-.+.+..++|+|+++.|+ +...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 45667777899999999876554 57778899999998 888877742 2356889999998877677667788999998
Q ss_pred CCCCc--eeEEec------ccCCCeEEEEEcCCCCeEEEEEeCCC-cEEEEEc-CCCeeEEEe----------eCCeeEE
Q 003840 584 DNPGY--SLRTFM------GHSASVMSLDFHPNKDDLICSCDGDG-EIRYWSI-NNGSCTRVF----------KGGTAQM 643 (792)
Q Consensus 584 ~s~~~--~i~~~~------~h~~~V~sl~fspd~~~ll~sgs~Dg-~I~iwdl-~~~~~~~~~----------~~~~~~v 643 (792)
...+. .+.... ........|+|.|.+..++++...+. .|+.|+- .....+..+ ......+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 76553 122221 23445689999999888887665554 4555551 011112222 1245789
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCC---------CCeEEEEEcCCCCEEEEEeCCeEEEEEC
Q 003840 644 RFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSEDSVRVWTV 707 (792)
Q Consensus 644 ~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~sv~~spdg~~Las~s~d~I~IwDl 707 (792)
+++|..+.+++.+. ...|.++|.... .+..+.-.. ..-..|+|+++|++++++-.+.+++|.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 99999988887776 568888887644 444433221 2457899999999666644446666643
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.51 E-value=0.00016 Score=78.38 Aligned_cols=226 Identities=9% Similarity=0.033 Sum_probs=142.6
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee
Q 003840 558 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 637 (792)
Q Consensus 558 ~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~ 637 (792)
+|.+..++ .+|+.+.. ..|+..+++. .. ...+......+..++|++.+..++++-...+.|+.+++........+.
T Consensus 37 ~C~~~~~~-~~ll~~~~-~~I~~i~~~g-~~-~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 37 SCKALGPE-PVLLFANR-IDIRQVLPHR-SE-YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp CEEESSSC-CEEEEECB-SCEEEECTTS-CC-EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred cccccccC-ceeEeecc-cceEEEeCCC-Ce-eEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 34444443 34444433 4488888865 22 333333445588999998878888777778999999998765444433
Q ss_pred C---CeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCC
Q 003840 638 G---GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSG 710 (792)
Q Consensus 638 ~---~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~ 710 (792)
. ....+++.+.++.|+.+.. .+.|.+++++.......+.........|+++|.+.+|+....+ .|..+++...
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~ 192 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 192 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence 2 3467889887777766655 6799999987654443343344567899999976655555433 6777777542
Q ss_pred CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEE-EcccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003840 711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFV 788 (792)
Q Consensus 711 ~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~-~~~h~~~V~sl~fspdg~~LaSgs~DG~I 788 (792)
. ....+.........++|++++..|+++... +.|..+|+....... +........+|++. ++.++++-...+.|
T Consensus 193 ~---~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V 268 (349)
T 3v64_C 193 G---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI 268 (349)
T ss_dssp S---CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred C---cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeE
Confidence 1 111112234457899999988888877654 689999988654443 33334567788883 34344443345555
Q ss_pred EEe
Q 003840 789 KLW 791 (792)
Q Consensus 789 ~IW 791 (792)
..+
T Consensus 269 ~~~ 271 (349)
T 3v64_C 269 NSA 271 (349)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.51 E-value=9.3e-05 Score=81.39 Aligned_cols=225 Identities=9% Similarity=0.028 Sum_probs=143.9
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC
Q 003840 559 DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 638 (792)
Q Consensus 559 ~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~ 638 (792)
|.+..+ ..+|+.+.. ..|+.+++.. .. +..+......+..++|++.+..++++-...+.|+.|++........+..
T Consensus 81 C~~~~~-~~~l~~~~~-~~I~~i~~~~-~~-~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 81 CKALGP-EPVLLFANR-IDIRQVLPHR-SE-YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp EEECSS-CCEEEEECB-SCEEEECTTS-CC-CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred ECCccc-cceeEeecC-ccceeeccCC-Cc-EEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 334444 234444433 4588888875 22 2333334456889999988788887877789999999987665444432
Q ss_pred ---CeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCC
Q 003840 639 ---GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGS 711 (792)
Q Consensus 639 ---~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~~ 711 (792)
....+++.+.++.|+.+.. .+.|.+++++.......+.........|+++|.+.+|+....+ .|..+++....
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 3456888887777766655 6789999987654444444444567899999977766655433 67777775421
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEE-EcccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003840 712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFVK 789 (792)
Q Consensus 712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~-~~~h~~~V~sl~fspdg~~LaSgs~DG~I~ 789 (792)
..............++|++++..|+++... +.|+.+|+....... +........+|++. ++.++++-...+.|.
T Consensus 237 ---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~ 312 (386)
T 3v65_B 237 ---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSIN 312 (386)
T ss_dssp ---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred ---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEE
Confidence 111222334457899999988888877654 689999987654443 33334567788883 344444444456665
Q ss_pred Ee
Q 003840 790 LW 791 (792)
Q Consensus 790 IW 791 (792)
.+
T Consensus 313 ~~ 314 (386)
T 3v65_B 313 SA 314 (386)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.51 E-value=0.00022 Score=75.95 Aligned_cols=217 Identities=11% Similarity=0.004 Sum_probs=137.3
Q ss_pred eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC----CeeEEEee---CCe
Q 003840 568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----GSCTRVFK---GGT 640 (792)
Q Consensus 568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~----~~~~~~~~---~~~ 640 (792)
+|+.+.. ..|+..|++.. .....+ .....+.+++|++.+..++++-..++.|..+++.. ......+. ...
T Consensus 3 ~ll~~~~-~~I~~i~~~~~-~~~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRS-EYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEECB-SSEEEEETTSC-CCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEECC-CeEEEEECCCc-ceEehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 3444444 45899999863 333333 34456889999998788887877789999999886 22222232 245
Q ss_pred eEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC---CeEEEEECCCCCCcceE
Q 003840 641 AQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---DSVRVWTVGSGSEGECV 716 (792)
Q Consensus 641 ~~v~~sp~~~~lla~s-~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~---d~I~IwDl~s~~~~~~i 716 (792)
..+++.+.++.++.+. ..+.|.++|.+.......+.........++++|.+.+|+.+.. ..|..+++... ....+
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~ 158 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSL 158 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEE
Confidence 6788887777776664 4789999998865544444433456789999996665554443 26777777432 11111
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEEc---ccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 717 HELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLT---AHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 717 ~~~~~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~~~---~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
..........+++++++..|+++... +.|..+|+.......+. .......+|++. .+.++++-...+.|..+
T Consensus 159 --~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 159 --VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp --ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred --EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 12234567899999988888877754 59999999865443332 123456788885 34444444445666654
No 277
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.51 E-value=7.6e-05 Score=79.84 Aligned_cols=219 Identities=9% Similarity=-0.023 Sum_probs=139.6
Q ss_pred CCeEEEEECCCCc-eeEEeccCCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCC
Q 003840 533 DKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 610 (792)
Q Consensus 533 Dg~I~vWdl~t~~-~~~~l~~h~~~V~~i~fspdg~~L-asgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~ 610 (792)
...|+.+|++... ....+......+..|+|.+.+..| ++-...+.|..++++........+...-.....+++.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4678999998764 122222223457789999855544 55556788999998764222222222334567889988777
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEecCCCCCeEEE
Q 003840 611 DLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSV 685 (792)
Q Consensus 611 ~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~--dg~I~i~D~~t~~~~~~l~~h~~~V~sv 685 (792)
.++++-...+.|.++++........+. .....+++.|.++.++.+.. .+.|..++++.......+...-..-..|
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 788777778899999987544333332 23567899998888887774 5789999887543332233333456899
Q ss_pred EEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCc
Q 003840 686 CWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENK 756 (792)
Q Consensus 686 ~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~~~~ 756 (792)
+|++++..|+.+... .|..+|+... ....+. .........+++.. ..|+... ..+.|..+|..+++
T Consensus 172 avd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~--~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 172 TLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVV--KGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE--CSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred EEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEe--cCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCC
Confidence 999977776666554 8999998643 222222 22344566777753 3455444 44689999986654
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.51 E-value=3.7e-05 Score=79.36 Aligned_cols=197 Identities=11% Similarity=0.164 Sum_probs=128.8
Q ss_pred EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003840 592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAE 667 (792)
Q Consensus 592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~ 667 (792)
.+.+-...+..|+|+|+++.|+++...++.|...|+. ++.++.+. .....+++..++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4445667899999999988898888889999999998 88877764 245668888776544444457789999876
Q ss_pred CCe---EEEEec------CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC---CCCcceEEE--e--ecCCCceEEEE
Q 003840 668 TQA---CRLSLQ------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS---GSEGECVHE--L--SCNGNKFHSCV 730 (792)
Q Consensus 668 t~~---~~~~l~------~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s---~~~~~~i~~--~--~~~~~~i~si~ 730 (792)
... .+.... ........|+|++.+..|+++.+. ...||.+.. ......+.. + ......+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 543 222221 134457899999998766666654 444444431 111111111 0 11234578999
Q ss_pred EeCCCCEEEEEEcC-CeEEEEECCCCcEE-E--Ecc-c------CCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 731 FHPTYPSLLVIGCY-QSLELWNMSENKTM-T--LTA-H------EGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 731 fspdg~~L~sgs~d-g~I~IwDl~~~~~~-~--~~~-h------~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
++|....|++.+.. +.|.++|.... .+ . +.. . -.....|+|.++|+++++ ++-+.+++|
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 99977766666655 58899997755 44 2 221 1 125689999999985554 677766665
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.47 E-value=0.00026 Score=79.09 Aligned_cols=232 Identities=12% Similarity=0.103 Sum_probs=136.8
Q ss_pred CEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCC---C-cEEEEEcCC
Q 003840 556 LITDVRFSPS--MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---G-EIRYWSINN 629 (792)
Q Consensus 556 ~V~~i~fspd--g~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D---g-~I~iwdl~~ 629 (792)
....|+|+++ ...|+++...+.|+.+|+.+ + .+..+........+|+|+++++ ++++.... . .+..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~-g-~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN-Q-YVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTT-T-EEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCC-C-EEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4678999984 44566665558899999875 3 3444444556689999999988 66554321 1 233333322
Q ss_pred Cee-EEEe--eCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEe-cC-CCCCeEEEEEcCCCCEEEEEeCC--e
Q 003840 630 GSC-TRVF--KGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSL-QG-HTKPIDSVCWDPSGELLASVSED--S 701 (792)
Q Consensus 630 ~~~-~~~~--~~~~~~v~~sp~~~~lla~s-~dg~I~i~D~~t~~~~~~l-~~-h~~~V~sv~~spdg~~Las~s~d--~ 701 (792)
+.. ...+ ......+++.+..+.|+++. .++.|+.+|..++.....+ .. ....-..|+|+|++++|+.+... .
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 111 0111 13345688899556666555 4678999999877652222 21 22233579999999966665544 8
Q ss_pred EEEEECCCC-CCcceEEEeecC---------------CCceEEEEE---------eCCCCEEEEEEcCCeEEEEECCCCc
Q 003840 702 VRVWTVGSG-SEGECVHELSCN---------------GNKFHSCVF---------HPTYPSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 702 I~IwDl~s~-~~~~~i~~~~~~---------------~~~i~si~f---------spdg~~L~sgs~dg~I~IwDl~~~~ 756 (792)
|+.+++... ........+.+. -.....+++ .+++.++++-...+.|+.++. ++.
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 999887531 111111111111 123567888 556654444445578999985 555
Q ss_pred EEEEccc------------------CCCeEEEEEe-CCCCEEEEEeCCCcEEEe
Q 003840 757 TMTLTAH------------------EGLIAALAVS-TETGYVASASHDKFVKLW 791 (792)
Q Consensus 757 ~~~~~~h------------------~~~V~sl~fs-pdg~~LaSgs~DG~I~IW 791 (792)
..++.+. -.....|+++ +++.++++-...++|+.+
T Consensus 376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 5544332 1237789999 566555554456777765
No 280
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=4.8e-05 Score=85.04 Aligned_cols=234 Identities=10% Similarity=0.096 Sum_probs=141.5
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC-C----cEEEEeCCCC
Q 003840 513 SKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-K----TVRVWDADNP 586 (792)
Q Consensus 513 ~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D-g----~V~IWdl~s~ 586 (792)
.....|+|+| ++..|+++...+.|+++|++++...... ........|+|++++++|+++... + .+.+++....
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 3568899998 4556666665588999999876654443 355668999999999966666542 2 2444444321
Q ss_pred CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC----CeeEEEEecCCCEEEEEEc-CCeE
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAA-ENVV 661 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~~~~lla~s~-dg~I 661 (792)
......+. .......++++|++.+++++-..++.|+.|+...+.....+.. ....++|++++++++++.. .+.|
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 11112222 2334568889995566776776788999999987765333321 3567999999996666654 6789
Q ss_pred EEEECCC--CeE--EEEecCC---C------------CCeE-EEEEc--------CCCCEEEEEeCC-eEEEEECCCCCC
Q 003840 662 SILDAET--QAC--RLSLQGH---T------------KPID-SVCWD--------PSGELLASVSED-SVRVWTVGSGSE 712 (792)
Q Consensus 662 ~i~D~~t--~~~--~~~l~~h---~------------~~V~-sv~~s--------pdg~~Las~s~d-~I~IwDl~s~~~ 712 (792)
..++.+. ++. +..+.+. . ..-. .+++. ++|.++++-..+ .|+.++. .+
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G-- 371 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG-- 371 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS--
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC--
Confidence 9987653 221 1111111 0 1122 45553 345555555444 8888883 22
Q ss_pred cceEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003840 713 GECVHELSCN------------------GNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS 753 (792)
Q Consensus 713 ~~~i~~~~~~------------------~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~ 753 (792)
.+..+.+. -.....+++.+++..|+++.. .+.|+.++++
T Consensus 372 --~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 372 --RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp --EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred --cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 22222211 124788999996555555554 4578887764
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.40 E-value=5.8e-05 Score=84.43 Aligned_cols=233 Identities=10% Similarity=0.033 Sum_probs=139.9
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC-----cEEEEeCCC
Q 003840 513 SKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-----TVRVWDADN 585 (792)
Q Consensus 513 ~~V~~lafspd--g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg-----~V~IWdl~s 585 (792)
....+|+|+++ +..|+++...+.|+.+|..++.....+ ........|+|+++++ |+++...+ .+..++...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34678999985 445555554489999999877655443 4556689999999999 54444321 233333332
Q ss_pred CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-EEeeC----CeeEEEEecCCCEEEEEEc-CC
Q 003840 586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFKG----GTAQMRFQPHLGRYLAAAA-EN 659 (792)
Q Consensus 586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~-~~~~~----~~~~v~~sp~~~~lla~s~-dg 659 (792)
.......+. .......+++++++..++++-..++.|+.+|..++... ..+.. ....++|++++++|+++.. .+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 111111221 23445678899955566656666788999999877662 22221 1235999999997766665 67
Q ss_pred eEEEEECC--CCeE--EEEecCC---------------CCCeEEEEE---------cCCCCEEEEEeCC-eEEEEECCCC
Q 003840 660 VVSILDAE--TQAC--RLSLQGH---------------TKPIDSVCW---------DPSGELLASVSED-SVRVWTVGSG 710 (792)
Q Consensus 660 ~I~i~D~~--t~~~--~~~l~~h---------------~~~V~sv~~---------spdg~~Las~s~d-~I~IwDl~s~ 710 (792)
.|+.+|.. ++.. ...+.+. -.....+++ ..+|.++++-..+ .|+.++. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 99998865 2321 1111111 123556888 6777777666666 8988884 22
Q ss_pred CCcceEEEeecC------------------CCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 003840 711 SEGECVHELSCN------------------GNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS 753 (792)
Q Consensus 711 ~~~~~i~~~~~~------------------~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~ 753 (792)
.+..+.+. -.....+++.|....|+++. ..+.|+.++++
T Consensus 375 ----~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 ----RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ----EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ----CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 22222221 12367788884433455544 44577777764
No 282
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.39 E-value=0.00032 Score=84.09 Aligned_cols=238 Identities=8% Similarity=-0.039 Sum_probs=151.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCCCCC---ce
Q 003840 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPG---YS 589 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~L-asgs~Dg~V~IWdl~s~~---~~ 589 (792)
.-+|.++.... +|+.+ ....|+..++........+. ....+..|+|.+....| ++-...+.|+.++++... ..
T Consensus 386 ~~~C~~~~~~p-~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~ 462 (791)
T 3m0c_C 386 TKACKAVGSIA-YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 462 (791)
T ss_dssp CCCCEETTSCC-EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred Cceeeeccccc-ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce
Confidence 33444443332 44443 34568888887665544443 45678899999855554 455556789999987521 22
Q ss_pred eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEc-C-CeEEEE
Q 003840 590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA-E-NVVSIL 664 (792)
Q Consensus 590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~-d-g~I~i~ 664 (792)
...+.........|++.+.+.+|+++-...+.|.+.++........+.. ....|++.|..++|+.+.. . +.|.+.
T Consensus 463 ~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~ 542 (791)
T 3m0c_C 463 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 542 (791)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred eEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence 2333334456678999888888888888889999999986554444432 3567999999888888764 2 689999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003840 665 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 742 (792)
Q Consensus 665 D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs 742 (792)
++........+...-.....|++++.+..|+.+... .|.++++.... ...+......-.....|++ .+.+|+++.
T Consensus 543 ~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~-~~~v~~~~~~l~~P~glav--~~~~lYwtD 619 (791)
T 3m0c_C 543 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAV--FEDKVFWTD 619 (791)
T ss_dssp ETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEE--ETTEEEEEE
T ss_pred ecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc-eEEEecCCCccCCCCEEEE--eCCEEEEEE
Confidence 987665555554444678899999877776666554 89999986432 2222221112223455665 344666666
Q ss_pred cC-CeEEEEECCCCcE
Q 003840 743 CY-QSLELWNMSENKT 757 (792)
Q Consensus 743 ~d-g~I~IwDl~~~~~ 757 (792)
.. +.|...|..+++.
T Consensus 620 ~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 620 IINEAIFSANRLTGSD 635 (791)
T ss_dssp TTTTEEEEEETTTCCC
T ss_pred CCCCEEEEEeCCCCcc
Confidence 54 6888888766643
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.38 E-value=0.00039 Score=76.79 Aligned_cols=217 Identities=11% Similarity=0.025 Sum_probs=138.9
Q ss_pred eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC----eeEEEee---CCe
Q 003840 568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVFK---GGT 640 (792)
Q Consensus 568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~~---~~~ 640 (792)
+|+.+. ...|+..+++... ...+......+..|+|++.+..++++-...+.|+.+++... .....+. ...
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~--~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSE--YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCS--CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEec-cceeEEEccCCcc--eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 444443 4668888887632 23333455678899999987888877777889999998752 2223333 245
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC---CeEEEEECCCCCCcceE
Q 003840 641 AQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---DSVRVWTVGSGSEGECV 716 (792)
Q Consensus 641 ~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~---d~I~IwDl~s~~~~~~i 716 (792)
..+++.+.++.|+.+.. .+.|.++|++.......+.........|+++|.+.+|+.... ..|...++.... ..
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~ 238 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 238 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cE
Confidence 66888887777766654 679999999876655555444456789999997666555542 278888875431 11
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEEcc---cCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 717 HELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTA---HEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 717 ~~~~~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~~~~---h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
..+...-.....+++++++..|+++... +.|+.+|++......+.. ......+|++. .+.++++-...+.|..+
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 316 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEE
Confidence 1222333567899999988888888654 689999998765443322 23445677773 33344444445666554
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.37 E-value=0.00026 Score=75.68 Aligned_cols=219 Identities=9% Similarity=0.006 Sum_probs=137.9
Q ss_pred eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-EEee---CCeeEE
Q 003840 568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFK---GGTAQM 643 (792)
Q Consensus 568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~-~~~~---~~~~~v 643 (792)
+|+.+. ...|+.+|++...............+.+++|++.+..++++-...+.|..+++...... ..+. .....+
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 344443 45699999986432222222223456789999877778878777889999998866321 1221 245668
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC--C-eEEEEECCCCCCcceEEEe
Q 003840 644 RFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGECVHEL 719 (792)
Q Consensus 644 ~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~--d-~I~IwDl~s~~~~~~i~~~ 719 (792)
++.+.++.++.+.. .+.|.+++++.......+.........|+++|.+.+|+.+.. . .|..+++... ....+ +
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~--~ 161 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFII--I 161 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEE--E
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEE--E
Confidence 88887777766654 679999998765433333344456789999987665555542 3 7888887532 11111 2
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEE-cccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 720 SCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTL-TAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 720 ~~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~~-~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
...-.....++|++++..|+.+... +.|+.+|+.......+ ........++++..+ .++++-...+.|..+
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILAC 234 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEE
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEE
Confidence 2233457899999988888887654 6899999986544433 334455677877533 344443345556544
No 285
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.35 E-value=3e-05 Score=93.00 Aligned_cols=190 Identities=14% Similarity=0.151 Sum_probs=118.4
Q ss_pred CeEEEEEc-CCCCeEEEEEeCCC----cEEEEEcCCC-eeEE-EeeCCeeEEEEecCCCEEEEEEcC-----CeEEEEEC
Q 003840 599 SVMSLDFH-PNKDDLICSCDGDG----EIRYWSINNG-SCTR-VFKGGTAQMRFQPHLGRYLAAAAE-----NVVSILDA 666 (792)
Q Consensus 599 ~V~sl~fs-pd~~~ll~sgs~Dg----~I~iwdl~~~-~~~~-~~~~~~~~v~~sp~~~~lla~s~d-----g~I~i~D~ 666 (792)
.+..++|+ |||+.++++.+.+| .|+++|+.++ +.+. .+......+.|+|+++.|+.+..+ ..|+++++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 57789999 99998887777655 4999999998 6322 122234568899999998888765 26888898
Q ss_pred CCCe--EEEEec-CCCCCeEEEEEcCCCCEEEEEeC---C-eEEEEECCCCCCcce-EEEe-ecCCCceEEEEEeCCCCE
Q 003840 667 ETQA--CRLSLQ-GHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGEC-VHEL-SCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 667 ~t~~--~~~~l~-~h~~~V~sv~~spdg~~Las~s~---d-~I~IwDl~s~~~~~~-i~~~-~~~~~~i~si~fspdg~~ 737 (792)
.++. .+..+. ........+.|+|||++|+..+. . .|+++|+.++.. .. +..+ ........++.|+. ++.
T Consensus 255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~~~~~l~~~~~~~~~s~~~~~-g~~ 332 (751)
T 2xe4_A 255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HNTLEIVRPREKGVRYDVQMHG-TSH 332 (751)
T ss_dssp TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-CCCEEESSCCCTTCCEEEEEET-TTE
T ss_pred CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-CceeEEeecCCCCceEEEeeee-CCE
Confidence 7753 122222 23345678899999998876552 2 789999976521 12 1222 22334445555544 555
Q ss_pred EEEEEcC-----CeEEEEECCC-CcEEE-EcccCC--CeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 738 LLVIGCY-----QSLELWNMSE-NKTMT-LTAHEG--LIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 738 L~sgs~d-----g~I~IwDl~~-~~~~~-~~~h~~--~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
|+..+.. ..|+++|+.+ +.... +..+.. .+..+.+. .+.++++...||..+||
T Consensus 333 l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 5555433 2788888875 23223 344443 34555554 33455666677876654
No 286
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.31 E-value=0.00014 Score=77.93 Aligned_cols=183 Identities=17% Similarity=0.237 Sum_probs=124.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCC----CC---eEEEEe-C--CCcEEEEeCCCCCceeEE
Q 003840 523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS----MP---RLATSS-F--DKTVRVWDADNPGYSLRT 592 (792)
Q Consensus 523 dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspd----g~---~Lasgs-~--Dg~V~IWdl~s~~~~i~~ 592 (792)
...+++.....+-+.|||+ +++.+..+.. +.++.|..-|+ ++ ++++.. . +++|++|+++.....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3446666667789999999 8888888864 56777776663 22 223333 3 578999988532334555
Q ss_pred ecc------cC-CCeEEEEE--cCC-CCeEEEEEeCCCcEEEEEcC-------CCeeEEEee--CCeeEEEEecCCCEEE
Q 003840 593 FMG------HS-ASVMSLDF--HPN-KDDLICSCDGDGEIRYWSIN-------NGSCTRVFK--GGTAQMRFQPHLGRYL 653 (792)
Q Consensus 593 ~~~------h~-~~V~sl~f--spd-~~~ll~sgs~Dg~I~iwdl~-------~~~~~~~~~--~~~~~v~~sp~~~~ll 653 (792)
+.. .. ..+..+|+ ++. +..++++..++|.+..|++. +.+.++.|. .....+.+.+..+.|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 522 11 56777888 664 44567788889999999983 335566665 3456688888899999
Q ss_pred EEEcCCeEEEEECC-----CCeEEEEec-CC-CCCeEEEEE--cCCCC-EEEEEeCC--eEEEEECC
Q 003840 654 AAAAENVVSILDAE-----TQACRLSLQ-GH-TKPIDSVCW--DPSGE-LLASVSED--SVRVWTVG 708 (792)
Q Consensus 654 a~s~dg~I~i~D~~-----t~~~~~~l~-~h-~~~V~sv~~--spdg~-~Las~s~d--~I~IwDl~ 708 (792)
++-.+..|..||.+ +++.+..+. ++ ...+..|++ .++++ ||++.+.+ .+.+||..
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99999888888865 345665553 22 236888887 45555 66666644 99999996
No 287
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.25 E-value=3.3e-05 Score=91.22 Aligned_cols=226 Identities=7% Similarity=0.006 Sum_probs=127.4
Q ss_pred EEEECC-CCCeEEEEeCCC-----------cEEEEeCCCCCce-eEEec-ccCCCeEEEEEcCCCCeEEEEEe-CCCcEE
Q 003840 559 DVRFSP-SMPRLATSSFDK-----------TVRVWDADNPGYS-LRTFM-GHSASVMSLDFHPNKDDLICSCD-GDGEIR 623 (792)
Q Consensus 559 ~i~fsp-dg~~Lasgs~Dg-----------~V~IWdl~s~~~~-i~~~~-~h~~~V~sl~fspd~~~ll~sgs-~Dg~I~ 623 (792)
.+++.+ ++++++.|+.+. .+.+||..+.... +..+. .+.....++++..++. +++.|+ .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceE
Confidence 456666 888888887643 5889999874422 22221 2333444577777765 555666 456899
Q ss_pred EEEcCCCeeEEEee--C--CeeEEEEecCCCEEEEEE-cC-----CeEEEEECCCCeEEEEe----cCCCCCeEEEEEcC
Q 003840 624 YWSINNGSCTRVFK--G--GTAQMRFQPHLGRYLAAA-AE-----NVVSILDAETQACRLSL----QGHTKPIDSVCWDP 689 (792)
Q Consensus 624 iwdl~~~~~~~~~~--~--~~~~v~~sp~~~~lla~s-~d-----g~I~i~D~~t~~~~~~l----~~h~~~V~sv~~sp 689 (792)
+||..+.+....-. . ....+++.+++..+++|+ .+ ..+.+||..+.+-...- ......-....+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 99998876554321 1 113355566777777777 33 57999999887644320 00000000011223
Q ss_pred CCCEEEEE----------eCCeEEEEECCCCCCcceEEEeec------CCCceEEEEEeC-CCCEEEEEEcCC-------
Q 003840 690 SGELLASV----------SEDSVRVWTVGSGSEGECVHELSC------NGNKFHSCVFHP-TYPSLLVIGCYQ------- 745 (792)
Q Consensus 690 dg~~Las~----------s~d~I~IwDl~s~~~~~~i~~~~~------~~~~i~si~fsp-dg~~L~sgs~dg------- 745 (792)
++++++.+ ..+.+..||..+............ ....-.++.|.. +++.+++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 33433333 233678899876532222211111 011224445544 667777776432
Q ss_pred ----eEEEEECCCCcEEEEc---ccCCC-eEEEEEeCCCCEEEEEeCC
Q 003840 746 ----SLELWNMSENKTMTLT---AHEGL-IAALAVSTETGYVASASHD 785 (792)
Q Consensus 746 ----~I~IwDl~~~~~~~~~---~h~~~-V~sl~fspdg~~LaSgs~D 785 (792)
.|.+||..+.....+. ..... -.++++.+++++++.||.+
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 6888998888766543 12222 2345667899999999865
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=0.00034 Score=78.89 Aligned_cols=239 Identities=12% Similarity=0.074 Sum_probs=144.0
Q ss_pred CeEEEEEcC-CCCEEEEE-eCCCeEEEEECCCCceeEEeccC---CCCEEEEEE-------CCCCCeEEEEeCCC-----
Q 003840 514 KVICCHFSS-DGKLLATG-GHDKKAVLWHTDTLKSKTNLEEH---SSLITDVRF-------SPSMPRLATSSFDK----- 576 (792)
Q Consensus 514 ~V~~lafsp-dg~~Lasg-s~Dg~I~vWdl~t~~~~~~l~~h---~~~V~~i~f-------spdg~~Lasgs~Dg----- 576 (792)
....|+|+| ++..|+++ ...+.|++.|++++.....+... ......|+| ++++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 478899998 34444444 44467999999887766555432 235899999 99999777776554
Q ss_pred --cEEEEeCCCCCcee-----EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-------CCee----------
Q 003840 577 --TVRVWDADNPGYSL-----RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-------NGSC---------- 632 (792)
Q Consensus 577 --~V~IWdl~s~~~~i-----~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~-------~~~~---------- 632 (792)
.|.+++....+... ..+... .....++++|++.+|+++...++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 26666544312211 222222 2345788999878888888888999999997 5543
Q ss_pred -EEE-ee----CCeeEEEEecCCCEEEEEE-cCCeEEEEEC--CCCeE--EEEecC---CC------------CCeE-EE
Q 003840 633 -TRV-FK----GGTAQMRFQPHLGRYLAAA-AENVVSILDA--ETQAC--RLSLQG---HT------------KPID-SV 685 (792)
Q Consensus 633 -~~~-~~----~~~~~v~~sp~~~~lla~s-~dg~I~i~D~--~t~~~--~~~l~~---h~------------~~V~-sv 685 (792)
... +. .....++|+|+++.++++. ....|+.+|. ..+.. ...+.+ .. .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 111 21 2246799999999766555 4678888654 33322 012211 11 1123 45
Q ss_pred EEc-------CCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC------------------------CCceEEEEEeC
Q 003840 686 CWD-------PSGELLASVSED-SVRVWTVGSGSEGECVHELSCN------------------------GNKFHSCVFHP 733 (792)
Q Consensus 686 ~~s-------pdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~------------------------~~~i~si~fsp 733 (792)
+.. .++.++++-..+ +|+.++. ++ .+.++.+. -.....+++.+
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G----~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG----IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC----BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeC-CC----CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 554 456666655555 8999983 33 23333221 12356788888
Q ss_pred CCCEEEEEEc-CCeEEEEECCCCcEE
Q 003840 734 TYPSLLVIGC-YQSLELWNMSENKTM 758 (792)
Q Consensus 734 dg~~L~sgs~-dg~I~IwDl~~~~~~ 758 (792)
+...|+++.. ...|+.++++...+.
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCEEEEEeCCCCEEEEEECCCCccc
Confidence 7334555544 458888888766554
No 289
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=0.00045 Score=77.89 Aligned_cols=230 Identities=13% Similarity=0.079 Sum_probs=135.7
Q ss_pred CEEEEEECC-CCCeEEEEeC-CCcEEEEeCCCCCceeEEeccc----CCCeEEEEE-------cCCCCeEEEEEeCCCc-
Q 003840 556 LITDVRFSP-SMPRLATSSF-DKTVRVWDADNPGYSLRTFMGH----SASVMSLDF-------HPNKDDLICSCDGDGE- 621 (792)
Q Consensus 556 ~V~~i~fsp-dg~~Lasgs~-Dg~V~IWdl~s~~~~i~~~~~h----~~~V~sl~f-------spd~~~ll~sgs~Dg~- 621 (792)
....|+|.| +...|+++.. .+.|++.|+.+ + .+..+... ......|+| ++++..++++...++.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~-~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN-R-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTT-T-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCC-C-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 467899998 3445555544 46688888875 3 33333321 235889999 9998877766655422
Q ss_pred -----EEEEEcCC-Cee--------EEEeeCCeeEEEEecCCCEEEEEEc-CCeEEEEECC-------CCeE--------
Q 003840 622 -----IRYWSINN-GSC--------TRVFKGGTAQMRFQPHLGRYLAAAA-ENVVSILDAE-------TQAC-------- 671 (792)
Q Consensus 622 -----I~iwdl~~-~~~--------~~~~~~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~-------t~~~-------- 671 (792)
|.+++... +.. +..+ .+...++++|+++.|+++.. ++.|+.||+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred ccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 66776443 122 2222 34567888997777776664 6789999987 4443
Q ss_pred ------EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcce--EEEeecC---------------CCce
Q 003840 672 ------RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGEC--VHELSCN---------------GNKF 726 (792)
Q Consensus 672 ------~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~--i~~~~~~---------------~~~i 726 (792)
+..+ ........|+|+|+|++|+.+... .|+.++...... .. ...+.+. -...
T Consensus 297 ~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~-~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 297 PNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK-EFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp TTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-EECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred ccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc-eecccEEecCCCCCCcccCCcccccccCCC
Confidence 2222 223456799999999965555544 888866542110 10 0111111 0123
Q ss_pred E-EEEEe-------CCCCEEEEEEcCCeEEEEECCCCcEEEEccc------------------------CCCeEEEEEeC
Q 003840 727 H-SCVFH-------PTYPSLLVIGCYQSLELWNMSENKTMTLTAH------------------------EGLIAALAVST 774 (792)
Q Consensus 727 ~-si~fs-------pdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h------------------------~~~V~sl~fsp 774 (792)
. .++.. .++.++++=....+|+.++ .++...++.+. -.....|++++
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 4 44554 3455444444557999999 45665555432 12367899999
Q ss_pred C-CCEEEEEeCCCcEEEe
Q 003840 775 E-TGYVASASHDKFVKLW 791 (792)
Q Consensus 775 d-g~~LaSgs~DG~I~IW 791 (792)
+ +.++++=....+|+.+
T Consensus 454 ~~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp TTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCCEEEEE
Confidence 7 6555554456777765
No 290
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.15 E-value=0.0033 Score=73.42 Aligned_cols=274 Identities=10% Similarity=-0.012 Sum_probs=158.9
Q ss_pred CCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC--CCcEEEEeCCCCCce
Q 003840 513 SKVICCHFSSDGKLLAT-GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYS 589 (792)
Q Consensus 513 ~~V~~lafspdg~~Las-gs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~--Dg~V~IWdl~s~~~~ 589 (792)
.....+++++.+..|+. -...+.|.+.+++.......+...-.....|++.|.+.+|+.+.. .+.|...+++. ...
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~ 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSR 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-CSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-Cce
Confidence 46889999996655554 456789999998765444444345566789999997666666654 35666667764 222
Q ss_pred eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc-CCeEEEEE
Q 003840 590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA-ENVVSILD 665 (792)
Q Consensus 590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~-dg~I~i~D 665 (792)
.......-.....|++.+++..|+++-...+.|..+|+.......... .+...+++..+ .++.+.. .+.|...|
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACN 240 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEE
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEE
Confidence 222223345678999999888888777778889999987544333222 12334555433 5555543 67888888
Q ss_pred CCCCeEEEEecCCCC-------------------------Ce--EEE---------EEcCCC---------------CEE
Q 003840 666 AETQACRLSLQGHTK-------------------------PI--DSV---------CWDPSG---------------ELL 694 (792)
Q Consensus 666 ~~t~~~~~~l~~h~~-------------------------~V--~sv---------~~spdg---------------~~L 694 (792)
..+++....+..... .. .|+ |..|.| .+|
T Consensus 241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L 320 (619)
T 3s94_A 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL 320 (619)
T ss_dssp SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence 876643322211000 00 111 111211 144
Q ss_pred EEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEEEE-cccCCCeEEEEE
Q 003840 695 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTMTL-TAHEGLIAALAV 772 (792)
Q Consensus 695 as~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~~~~~~~~-~~h~~~V~sl~f 772 (792)
+.+....|+..++...........+ ..-..+..++|.+.+..|+.+.. .+.|+.+++.......+ ...-..+..+++
T Consensus 321 l~~~~~~i~~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAv 399 (619)
T 3s94_A 321 LLARRTDLRRISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV 399 (619)
T ss_dssp EEEESSCEEEEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEcccceEEEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEE
Confidence 4444446666677554321111111 12234678999997777777765 57899999887544333 333356778999
Q ss_pred eCCCCEEEEEe-CCCcEEE
Q 003840 773 STETGYVASAS-HDKFVKL 790 (792)
Q Consensus 773 spdg~~LaSgs-~DG~I~I 790 (792)
...++.|+.+. ..+.|.+
T Consensus 400 D~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 400 DWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp ETTTTEEEEEETTTTEEEE
T ss_pred ecccCcEEEEeCCCCcEEE
Confidence 87555444443 3455554
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.12 E-value=0.0011 Score=79.45 Aligned_cols=201 Identities=11% Similarity=-0.004 Sum_probs=128.5
Q ss_pred cCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCC----ceeEEeccCCCCEEEEEECCCCCeE-EEEeCCCcEEEEeC
Q 003840 510 ASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDA 583 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~La-sgs~Dg~I~vWdl~t~----~~~~~l~~h~~~V~~i~fspdg~~L-asgs~Dg~V~IWdl 583 (792)
.....+..|+|++.+..|+ +-...+.|+.++++.. .....+.........|++...+..| ++-...+.|.+.++
T Consensus 421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 500 (791)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeC
Confidence 3456688999998555554 4455678999998753 2334444445667789998776544 45566788999999
Q ss_pred CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCC-CcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEc-C
Q 003840 584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA-E 658 (792)
Q Consensus 584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D-g~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~-d 658 (792)
+. ......+.........|++.|.+.+|+++-..+ +.|.+.++........+.. ....+++.+..++|+.+.. .
T Consensus 501 dG-~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~ 579 (791)
T 3m0c_C 501 KG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 579 (791)
T ss_dssp TS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CC-CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCC
Confidence 75 333333333445688999999877777665443 7899999875544444432 4567999988888888765 5
Q ss_pred CeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCc
Q 003840 659 NVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEG 713 (792)
Q Consensus 659 g~I~i~D~~t~~~~~~l~~--h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~ 713 (792)
+.|..+|+........+.. .-.....|++. +.+|+..... .|...|..++...
T Consensus 580 ~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 580 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred CcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcce
Confidence 6899999876544333332 22234566664 3345544443 7888887666443
No 292
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.09 E-value=0.00057 Score=74.04 Aligned_cols=224 Identities=12% Similarity=0.104 Sum_probs=120.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--EEec---cCCCCEEEEEECCC---CCeEEEEeC-C-----Cc
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLE---EHSSLITDVRFSPS---MPRLATSSF-D-----KT 577 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~--~~l~---~h~~~V~~i~fspd---g~~Lasgs~-D-----g~ 577 (792)
-.....++|.|||+++++ ..+|.|++++ +++.. ..+. ........|+|+|+ +..|+++.. + ..
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 445789999999985554 5679999998 34322 1121 22456899999998 555555543 2 56
Q ss_pred EEEEeCCCCC----c-eeEEec---ccCCCeEEEEEcCCCCeEEEEEeC-------------CCcEEEEEcCCC------
Q 003840 578 VRVWDADNPG----Y-SLRTFM---GHSASVMSLDFHPNKDDLICSCDG-------------DGEIRYWSINNG------ 630 (792)
Q Consensus 578 V~IWdl~s~~----~-~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~-------------Dg~I~iwdl~~~------ 630 (792)
|..|++.... . .+..+. ........|+|.|++. |+++.+. .|.|..++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 8888876421 1 111122 1112346899999985 4444322 145666665420
Q ss_pred ------eeEEEee---CCeeEEEEecCCCEEEEEEcC-Ce--------EEEEECCC----------------CeEEEEec
Q 003840 631 ------SCTRVFK---GGTAQMRFQPHLGRYLAAAAE-NV--------VSILDAET----------------QACRLSLQ 676 (792)
Q Consensus 631 ------~~~~~~~---~~~~~v~~sp~~~~lla~s~d-g~--------I~i~D~~t----------------~~~~~~l~ 676 (792)
.....+. .....++|+++.+.|+++... +. |.+...-. ..++..+.
T Consensus 186 f~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 186 FLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred ccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 0111111 123457899955656655442 22 33332111 01222332
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc---ceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003840 677 GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG---ECVHELSCNGNKFHSCVFHPTYPSLLVI 741 (792)
Q Consensus 677 ~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~---~~i~~~~~~~~~i~si~fspdg~~L~sg 741 (792)
+......++| .+|.++++...+ .|...++...... .....+......+..+++.|||..+++.
T Consensus 266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 2223556777 466666655555 7877777543210 1122222334578899999998755554
No 293
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.09 E-value=0.021 Score=66.71 Aligned_cols=117 Identities=9% Similarity=-0.041 Sum_probs=80.2
Q ss_pred CCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC--CCcEEEEeCCCCCce
Q 003840 513 SKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYS 589 (792)
Q Consensus 513 ~~V~~lafspdg~~L-asgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~--Dg~V~IWdl~s~~~~ 589 (792)
.....|+++..+..| ++-...+.|.+.+++.......+...-.....|++.|...+|+.+.. .+.|...+++. ..
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG--~~ 157 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG--SE 157 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--CS
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC--Cc
Confidence 356789998765555 44455688999998765443334345566899999986666666553 46777777764 22
Q ss_pred eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe
Q 003840 590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 631 (792)
Q Consensus 590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~ 631 (792)
...+...-.....|++.+++..|+++-...+.|..+|+....
T Consensus 158 ~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~ 199 (628)
T 4a0p_A 158 RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN 199 (628)
T ss_dssp CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCc
Confidence 333333456678999999888888777778889999986543
No 294
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.08 E-value=0.0071 Score=72.25 Aligned_cols=261 Identities=10% Similarity=0.092 Sum_probs=151.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 591 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~ 591 (792)
...|.|+....+| .|.+|+.+| +.+||..+.+...........|.++.. .++ .|..++.+ -|..||..+ .. +.
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~-~~-~~ 134 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQS-RK-LT 134 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTT-CC-EE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCC-Ce-EE
Confidence 4569998888777 566676655 788998876543311112345777765 344 56667666 488888875 22 33
Q ss_pred Eec-----ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-eC-------CeeEEEEecCCCEEEEEEcC
Q 003840 592 TFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KG-------GTAQMRFQPHLGRYLAAAAE 658 (792)
Q Consensus 592 ~~~-----~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~-------~~~~v~~sp~~~~lla~s~d 658 (792)
.+. .....|.+|....++...+ ++. +-|..||..+++..... .. .+.++....+++.+.+++.
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g~lWi--gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDNQIYV--GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTCCEEE--EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred EeccCCCCcCCCeEEEEEEcCCCCEEE--EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 331 1235688888877765333 444 45888898776643321 11 1445555666676777764
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEe-----ecCCCceEEEEEeC
Q 003840 659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL-----SCNGNKFHSCVFHP 733 (792)
Q Consensus 659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~-----~~~~~~i~si~fsp 733 (792)
+.|..||..+++...........|.+++.+.+|.+.+.. .+.+.+++..+... ..+... ......|.++....
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 568889988765432211122458889888888876654 55788888765421 111100 01234588888777
Q ss_pred CCCEEEEEEcCCeEEEEECCCCc-EEEEc-----ccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003840 734 TYPSLLVIGCYQSLELWNMSENK-TMTLT-----AHEGLIAALAVSTETGYVASASHDKFV 788 (792)
Q Consensus 734 dg~~L~sgs~dg~I~IwDl~~~~-~~~~~-----~h~~~V~sl~fspdg~~LaSgs~DG~I 788 (792)
++. |.+|+..| |.++.....- ..... .....|.++....+|.+.+. +.+|.+
T Consensus 289 ~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~ 346 (758)
T 3ott_A 289 EHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLI 346 (758)
T ss_dssp TCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEE
T ss_pred CCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcce
Confidence 776 56666666 5555432211 11111 12346888888877776554 455533
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.08 E-value=0.0028 Score=74.11 Aligned_cols=218 Identities=10% Similarity=-0.025 Sum_probs=141.5
Q ss_pred eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEE
Q 003840 568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMR 644 (792)
Q Consensus 568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~ 644 (792)
+|+.+ ....|+..|++............-..+..|+|++.+..++++-..++.|+.+++........+.. ....++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44444 45679999998633322211223356889999998888888888889999999986554444432 356788
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe-C-C-eEEEEECCCCCCcceEEEee
Q 003840 645 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-E-D-SVRVWTVGSGSEGECVHELS 720 (792)
Q Consensus 645 ~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s-~-d-~I~IwDl~s~~~~~~i~~~~ 720 (792)
+.+.++.|+.+.. .+.|.+.+++.......+...-.....|+++|...+|+... . . .|...++.... ...+ .
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l---~ 162 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTL---V 162 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEE---E
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEE---E
Confidence 9888887777665 67999999876543333333445578999998655555544 2 3 77777775432 2222 2
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 721 CNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 721 ~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
........+++++++..|+++... +.|..+|+.......+........+|++.. +.++++-...+.|...
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERA 233 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEE
Confidence 245568899999988888888664 689999997755443333444566788764 3333333335556543
No 296
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.02 E-value=0.002 Score=69.79 Aligned_cols=228 Identities=12% Similarity=0.052 Sum_probs=124.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEEec---cCCCCEEEEEECCC---CCeEEEEeC----C----C
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLE---EHSSLITDVRFSPS---MPRLATSSF----D----K 576 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~-~~~~l~---~h~~~V~~i~fspd---g~~Lasgs~----D----g 576 (792)
-.....++|.|||+ |+++..+|.|+++| .+++ .+..+. ........|+|+|+ +..|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 45688999999997 44455679999997 3454 222221 22356899999997 555555443 3 5
Q ss_pred cEEEEeCCCCC------cee-EEecc-cCCCeEEEEEcCCCCeEEEEEeC------------CCcEEEEEcCCCe-----
Q 003840 577 TVRVWDADNPG------YSL-RTFMG-HSASVMSLDFHPNKDDLICSCDG------------DGEIRYWSINNGS----- 631 (792)
Q Consensus 577 ~V~IWdl~s~~------~~i-~~~~~-h~~~V~sl~fspd~~~ll~sgs~------------Dg~I~iwdl~~~~----- 631 (792)
.|..|++.... +.+ ..+.. .......|+|.|++..++..++. .|.|..++....-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 67778776431 111 11221 11234579999998644433321 2456555554210
Q ss_pred --eEEEee---CCeeEEEEecCCCEEEEEEcCC----eEEEEECCC----------------CeEEEEecCCCCCeEEEE
Q 003840 632 --CTRVFK---GGTAQMRFQPHLGRYLAAAAEN----VVSILDAET----------------QACRLSLQGHTKPIDSVC 686 (792)
Q Consensus 632 --~~~~~~---~~~~~v~~sp~~~~lla~s~dg----~I~i~D~~t----------------~~~~~~l~~h~~~V~sv~ 686 (792)
....+. .....++|+++.+.|+++.... .|.+...-. ..++..+.........++
T Consensus 186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 011121 2345688999666666665422 344432111 012233311223567788
Q ss_pred Ec-------CCCCEEEEEeCC-eEEEEECCCCCCcceEEEee-cCCCceEEEEEeCCCCEEEEE
Q 003840 687 WD-------PSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYPSLLVI 741 (792)
Q Consensus 687 ~s-------pdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~-~~~~~i~si~fspdg~~L~sg 741 (792)
|. .+|.++++.... .|..+++...........+. .....+..+++.|||..+++.
T Consensus 266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 83 467666665555 88888886432111122332 234578899999999644444
No 297
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.02 E-value=0.022 Score=59.96 Aligned_cols=247 Identities=10% Similarity=0.157 Sum_probs=150.0
Q ss_pred CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeE
Q 003840 533 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDL 612 (792)
Q Consensus 533 Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~l 612 (792)
+..|.|.|+.+...+.+..-.. -+.-.+|..+.||.-. ..++.|||+++ +..++.+.- ...|.-=.|..+. .+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~A---dsAIMnP~~~ViALra-g~~LQiFnlet-K~klks~~~-~e~VvfWkWis~~-~L 120 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISA---DSAIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHTM-TDDVTFWKWISLN-TV 120 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCC---SEEEECSSSSEEEEEE-TTEEEEEETTT-TEEEEEEEC-SSCEEEEEECSSS-EE
T ss_pred CCEEEEEECCCCCCcccccccc---ceeeeCCCccEEEEec-CCeEEEechHH-hhhhcceec-CCccEEEEecCCC-eE
Confidence 4478999998865543322111 1234588877777665 67899999998 555666553 3566666676553 33
Q ss_pred EEEEeCCCcEEEEEcCC-CeeEEEeeCC-------eeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEecC
Q 003840 613 ICSCDGDGEIRYWSINN-GSCTRVFKGG-------TAQMRFQPHLGRYLAAAA-------ENVVSILDAETQACRLSLQG 677 (792)
Q Consensus 613 l~sgs~Dg~I~iwdl~~-~~~~~~~~~~-------~~~v~~sp~~~~lla~s~-------dg~I~i~D~~t~~~~~~l~~ 677 (792)
.+++ +..|+-|++.. ....+.|+.+ +...+.+++.++++..+- .|.+.+|..+.+. -..+++
T Consensus 121 ~lVT--~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG 197 (365)
T 2xzh_A 121 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 197 (365)
T ss_dssp EEEE--SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECC
T ss_pred EEEc--CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeee
Confidence 3333 67899999975 3455555432 344566778888766553 3678889887653 344566
Q ss_pred CCCCeEEEEEcCC---CCEEEEEeC---C-eEEEEECCCC---CC--cc-eEEEeec---CCCceEEEEEeCCCCEEEEE
Q 003840 678 HTKPIDSVCWDPS---GELLASVSE---D-SVRVWTVGSG---SE--GE-CVHELSC---NGNKFHSCVFHPTYPSLLVI 741 (792)
Q Consensus 678 h~~~V~sv~~spd---g~~Las~s~---d-~I~IwDl~s~---~~--~~-~i~~~~~---~~~~i~si~fspdg~~L~sg 741 (792)
|......+.+..+ ..+|+.+.. + .+.|.++... .. .+ .+..+.. ...-..++..++....++..
T Consensus 198 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 6544333322211 113444433 2 7889998543 11 11 1111111 13346778889999999999
Q ss_pred EcCCeEEEEECCCCcEEE-EcccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003840 742 GCYQSLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFVK 789 (792)
Q Consensus 742 s~dg~I~IwDl~~~~~~~-~~~h~~~V~sl~fspdg~~LaSgs~DG~I~ 789 (792)
+..|.|++||++++.++. -.-....|..-+-+.+..-++....+|.|.
T Consensus 278 TK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl 326 (365)
T 2xzh_A 278 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 326 (365)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEE
T ss_pred eCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEE
Confidence 999999999999999883 333445555545444444455555666553
No 298
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.01 E-value=0.0017 Score=70.22 Aligned_cols=227 Identities=14% Similarity=0.128 Sum_probs=124.7
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec---ccCCCeEEEEEcCC---CCeEEEEEeCC-----CcE
Q 003840 554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPN---KDDLICSCDGD-----GEI 622 (792)
Q Consensus 554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~---~h~~~V~sl~fspd---~~~ll~sgs~D-----g~I 622 (792)
-...+.|+|.|+|+++ ++..+|.|++++ ......+..+. ........|+|+|+ +..++++...+ +.|
T Consensus 30 l~~P~~ia~~pdG~l~-V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 30 LEVPWALAFLPDGGML-IAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CSCEEEEEECTTSCEE-EEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCCceEEEEcCCCeEE-EEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 4457899999999854 455669999998 32111122111 22356889999998 55566554433 678
Q ss_pred EEEEcCCCee------EEEee--C----CeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC--------
Q 003840 623 RYWSINNGSC------TRVFK--G----GTAQMRFQPHLGRYLAAAA-------------ENVVSILDAETQ-------- 669 (792)
Q Consensus 623 ~iwdl~~~~~------~~~~~--~----~~~~v~~sp~~~~lla~s~-------------dg~I~i~D~~t~-------- 669 (792)
..|+...+.. +..+. . ....+.|.|++..+++.+. .+.|.-+|.+..
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 8888775421 11122 1 2356899999855544332 146666665431
Q ss_pred ------eEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eE------EEEECCCCCC---------------cceEEEee
Q 003840 670 ------ACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SV------RVWTVGSGSE---------------GECVHELS 720 (792)
Q Consensus 670 ------~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I------~IwDl~s~~~---------------~~~i~~~~ 720 (792)
..+.. .++ .....++|+| ++.++++-... .+ .|.-+..+.. ...+..+
T Consensus 188 ~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~- 264 (352)
T 2ism_A 188 GRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW- 264 (352)
T ss_dssp TCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred CCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence 01111 122 2356789999 67766654433 32 2333333220 1122222
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-------EEEEcccCCCeEEEEEeCCCCEEEEEeC-CC
Q 003840 721 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-------TMTLTAHEGLIAALAVSTETGYVASASH-DK 786 (792)
Q Consensus 721 ~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~-------~~~~~~h~~~V~sl~fspdg~~LaSgs~-DG 786 (792)
........++| .++..+++.-..+.|...+++... ...+..-...+.++++.|||.++++... +|
T Consensus 265 ~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~~~g 337 (352)
T 2ism_A 265 PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSNRDG 337 (352)
T ss_dssp TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECSTTT
T ss_pred CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeCCCC
Confidence 12234566777 455544444445678887776432 1122233467899999999987776543 44
No 299
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.00 E-value=0.0048 Score=65.87 Aligned_cols=230 Identities=10% Similarity=0.083 Sum_probs=127.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec---cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 588 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~---~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~ 588 (792)
...+.+|.|++ +..++ ++.++.|+. ..+.++.-..+. .+...+..|.+.+++..++++ .+|.| |.....+.
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~ 152 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGK 152 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCC
Confidence 34588888876 44444 455665544 333344333322 234567888887776655554 45544 32222233
Q ss_pred eeE-EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEE-EEc--CCCeeEEE-eeCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003840 589 SLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY-WSI--NNGSCTRV-FKGGTAQMRFQPHLGRYLAAAAENVVSI 663 (792)
Q Consensus 589 ~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~i-wdl--~~~~~~~~-~~~~~~~v~~sp~~~~lla~s~dg~I~i 663 (792)
... ........+.++++.+++. +++++ .+|.|+. +|- .+-+.+.. .......+.+.+++ .+++++.+|.+++
T Consensus 153 tW~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g-~~~~~~~~G~~~~ 229 (327)
T 2xbg_A 153 NWQALVQEAIGVMRNLNRSPSGE-YVAVS-SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDG-RLWMIVNGGKIAF 229 (327)
T ss_dssp SEEEEECSCCCCEEEEEECTTSC-EEEEE-TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTS-CEEEEETTTEEEE
T ss_pred CCEEeecCCCcceEEEEEcCCCc-EEEEE-CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCC-CEEEEeCCceEEE
Confidence 222 2334556789999998764 45444 4555444 332 12222211 12345567777775 5666777888877
Q ss_pred EECCCCeEEEEecC----CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003840 664 LDAETQACRLSLQG----HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 739 (792)
Q Consensus 664 ~D~~t~~~~~~l~~----h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~ 739 (792)
.+...++.-..+.. ....+.++.+.+++.+++++..+.| ++....+.....+.........+..+.|.+++ .++
T Consensus 230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~ 307 (327)
T 2xbg_A 230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGF 307 (327)
T ss_dssp EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEE
T ss_pred ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceE
Confidence 65333333222221 2235889999988888887776665 44554443333222111123457788887554 477
Q ss_pred EEEcCCeEEEEEC
Q 003840 740 VIGCYQSLELWNM 752 (792)
Q Consensus 740 sgs~dg~I~IwDl 752 (792)
+++.+|.|.-++-
T Consensus 308 ~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 308 ILGQKGILLRYVT 320 (327)
T ss_dssp EECSTTEEEEECC
T ss_pred EEcCCceEEEEcC
Confidence 7788888777653
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.00 E-value=1.2e-05 Score=95.56 Aligned_cols=224 Identities=8% Similarity=-0.037 Sum_probs=133.9
Q ss_pred CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCC---CceeEEecccCCCeEEEEEcC
Q 003840 532 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNP---GYSLRTFMGHSASVMSLDFHP 607 (792)
Q Consensus 532 ~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~V~IWdl~s~---~~~i~~~~~h~~~V~sl~fsp 607 (792)
..+.|++.++++......+.. ...+..|+|.+.+..|+.+ ...+.|+.+++... ......+.........|++.+
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 346788888887665444433 3456788999876666655 45678999998741 111111111222345788876
Q ss_pred CCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEecCCCCCe
Q 003840 608 NKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPI 682 (792)
Q Consensus 608 d~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~--dg~I~i~D~~t~~~~~~l~~h~~~V 682 (792)
.+..|+++-...+.|.++++........+. .....+++.|.+++|+.+.. .+.|.++++........+...-...
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~P 542 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 542 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence 666677666667899999988655444433 23466888888777776654 2688888876443222222223446
Q ss_pred EEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEE
Q 003840 683 DSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMT 759 (792)
Q Consensus 683 ~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~ 759 (792)
..|+|++++..|+.+... .|.++++... ....+............+++..+ .|+++. ..+.|..+|..+++.+.
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEE
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceE
Confidence 689999976655555444 8999998642 21222211111223345555443 455554 45689999988777664
No 301
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.99 E-value=0.0017 Score=75.83 Aligned_cols=221 Identities=9% Similarity=-0.024 Sum_probs=136.0
Q ss_pred CCCeEEEEECCCCc-eeEEeccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCC
Q 003840 532 HDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 609 (792)
Q Consensus 532 ~Dg~I~vWdl~t~~-~~~~l~~h~~~V~~i~fspdg~~Lasgs-~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~ 609 (792)
....|++.|++... ....+......+..|+|++.+..|+.+. ..+.|..++++........+...-.....|++.+.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 45678888887653 2222333455688999998766666554 467888899875322223333333578899999987
Q ss_pred CeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEecCCCCCeEE
Q 003840 610 DDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDS 684 (792)
Q Consensus 610 ~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~--dg~I~i~D~~t~~~~~~l~~h~~~V~s 684 (792)
..++++-...+.|.+.++........+. .....+++.|..++++.+.. .+.|...++............-.....
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 175 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence 8888888888999999998654333332 24567999999888887764 367888887654333333334456789
Q ss_pred EEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcE
Q 003840 685 VCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKT 757 (792)
Q Consensus 685 v~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~~~~~ 757 (792)
|++++++..|+.+... .|..+|+........+ .........+++..+ .|+.+.. .+.|...|..+++.
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~---~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE---eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence 9999987766666554 8888888643211111 111222345666544 5666554 46888888877653
No 302
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.95 E-value=0.038 Score=60.36 Aligned_cols=248 Identities=10% Similarity=0.149 Sum_probs=151.8
Q ss_pred CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCe
Q 003840 532 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 611 (792)
Q Consensus 532 ~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ 611 (792)
.+..|.|.|+.+...+.+..-. --+.-.+|..+.||.-. ..++.|||+++ +..++.+.-.. .|.-=.|..+. .
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~-K~klks~~~~e-~VvfWkWis~~-~ 118 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHTMTD-DVTFWKWISLN-T 118 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTT-TEEEEEEECSS-CCCEEEEEETT-E
T ss_pred CCCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHH-hhhhcceecCC-CceEEEecCCC-e
Confidence 3447999999886554332211 11345678777776665 77899999998 55666665434 45555565442 2
Q ss_pred EEEEEeCCCcEEEEEcCC-CeeEEEeeC-------CeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEec
Q 003840 612 LICSCDGDGEIRYWSINN-GSCTRVFKG-------GTAQMRFQPHLGRYLAAAA-------ENVVSILDAETQACRLSLQ 676 (792)
Q Consensus 612 ll~sgs~Dg~I~iwdl~~-~~~~~~~~~-------~~~~v~~sp~~~~lla~s~-------dg~I~i~D~~t~~~~~~l~ 676 (792)
+. ..+ +..|+-|++.. ...++.|+. .+...+.+++.++++..+- .|.+.+|..+.+. -..++
T Consensus 119 l~-lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ie 195 (494)
T 1bpo_A 119 VA-LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE 195 (494)
T ss_dssp EE-EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEEC
T ss_pred EE-EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhe
Confidence 33 222 77899999974 345556543 2344567788888776553 4678889887653 34456
Q ss_pred CCCCCeEEEEEcCCC---CEEEEEeC----CeEEEEECCCCC-----CcceEEEe-ec---CCCceEEEEEeCCCCEEEE
Q 003840 677 GHTKPIDSVCWDPSG---ELLASVSE----DSVRVWTVGSGS-----EGECVHEL-SC---NGNKFHSCVFHPTYPSLLV 740 (792)
Q Consensus 677 ~h~~~V~sv~~spdg---~~Las~s~----d~I~IwDl~s~~-----~~~~i~~~-~~---~~~~i~si~fspdg~~L~s 740 (792)
+|......+.+..+. .+|+.+.. ..+.|.++.... ..+....+ .. ...-..++.+++....++.
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence 665544433332211 24444443 278999986431 11111111 11 1334677889999999999
Q ss_pred EEcCCeEEEEECCCCcEEEE-cccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003840 741 IGCYQSLELWNMSENKTMTL-TAHEGLIAALAVSTETGYVASASHDKFVK 789 (792)
Q Consensus 741 gs~dg~I~IwDl~~~~~~~~-~~h~~~V~sl~fspdg~~LaSgs~DG~I~ 789 (792)
.+..|.|++||+.++.++.. .-....|...+...+..-++....+|.|.
T Consensus 276 iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl 325 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 325 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred EecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence 99999999999999998833 34445565555555545555556666553
No 303
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.95 E-value=0.02 Score=68.25 Aligned_cols=265 Identities=8% Similarity=0.026 Sum_probs=152.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe-cc----CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EE----HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l-~~----h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
...|.++....+|.+.+ |+.+ -|..||..+.+..... .. ....|.+|....++..|..|+.. -|..||..+
T Consensus 145 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~-Gl~~~~~~~- 220 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG-YLFQYFPST- 220 (758)
T ss_dssp CSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE-EEEEEETTT-
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECC-CCeEEcCCC-
Confidence 35689999888887555 4444 5778888776543221 11 12348888888777766666644 488888875
Q ss_pred CceeEEec-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----------CCeeEEEEecCCCEEEEE
Q 003840 587 GYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------GGTAQMRFQPHLGRYLAA 655 (792)
Q Consensus 587 ~~~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----------~~~~~v~~sp~~~~lla~ 655 (792)
+. +..+. .....|.+|....++... .|+. +-|.+++..++....... ..+.++....+ +.+.+|
T Consensus 221 ~~-~~~~~~l~~~~i~~i~~d~~g~lW--igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~-g~lWiG 295 (758)
T 3ott_A 221 GQ-IKQTEAFHNNSIKSLALDGNGDLL--AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE-HNIWLG 295 (758)
T ss_dssp TE-EEEEEEEEEEEEEEEEECTTCCEE--EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT-CCEEEE
T ss_pred Ce-EEeccCCCCCeEEEEEEcCCCCEE--EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC-CCEEEE
Confidence 22 22221 123458888887776533 3443 458888887665433221 12344444443 456667
Q ss_pred EcCCeEEEEECCCCeEEEEec-----CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEee-------cCC
Q 003840 656 AAENVVSILDAETQACRLSLQ-----GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELS-------CNG 723 (792)
Q Consensus 656 s~dg~I~i~D~~t~~~~~~l~-----~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~-------~~~ 723 (792)
+..| +.++.....-...... .....|.+++.+.+|.+.+.. .+.+..++..++.... +..+. ...
T Consensus 296 T~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~ 372 (758)
T 3ott_A 296 TDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHD-AIWYRMGDKTYPLSH 372 (758)
T ss_dssp ESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCC-CEEECTTCSSSCCSC
T ss_pred eCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEee-CCcceeecccccccce-eEEeccCCcCCCCCC
Confidence 7666 5444332211111111 123468899988888876654 4567777765432111 11111 122
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc--c-----cCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 724 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT--A-----HEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 724 ~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~--~-----h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
..|.++....++. |.+|+ ++.|..||..+++...+. . ....|.++....++.+.+ |+..+-|.+|
T Consensus 373 ~~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~ 444 (758)
T 3ott_A 373 NRIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVV 444 (758)
T ss_dssp SCEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEE
T ss_pred CceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEE
Confidence 4578888777776 55555 568999999888765332 1 234688888877776544 5555445554
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.94 E-value=0.0043 Score=67.14 Aligned_cols=224 Identities=14% Similarity=0.127 Sum_probs=127.9
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec---ccCCCeEEEEEcCC---CCeEEEEEeC---C----C
Q 003840 554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPN---KDDLICSCDG---D----G 620 (792)
Q Consensus 554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~---~h~~~V~sl~fspd---~~~ll~sgs~---D----g 620 (792)
-...+.|+|.|+++ |+++..+|.|+++|... ...+..+. ........|+|+|+ +..++++-.. + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G-~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISPSG-KKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECSSC-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeCCC-ceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 45578999999997 55556669999997432 22222211 22356889999997 5556555432 3 5
Q ss_pred cEEEEEcCCC--e-----eE-EEeeC----CeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC------
Q 003840 621 EIRYWSINNG--S-----CT-RVFKG----GTAQMRFQPHLGRYLAAAA-------------ENVVSILDAETQ------ 669 (792)
Q Consensus 621 ~I~iwdl~~~--~-----~~-~~~~~----~~~~v~~sp~~~~lla~s~-------------dg~I~i~D~~t~------ 669 (792)
.|..|+.... . .+ ..+.. ....+.|.|++..+++.+. .|.|..+|.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6778887654 1 11 11221 2356899999865555432 245666665432
Q ss_pred ---eEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC----eEEEEECCCCCC---------------cceEEEeecCCCce
Q 003840 670 ---ACRLSLQGHTKPIDSVCWDP-SGELLASVSED----SVRVWTVGSGSE---------------GECVHELSCNGNKF 726 (792)
Q Consensus 670 ---~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d----~I~IwDl~s~~~---------------~~~i~~~~~~~~~i 726 (792)
..+. ..++. ....++|++ +++++++-... .|.+.. .+.. ...+..+.......
T Consensus 186 f~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 186 FPNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp STTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred CCCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 1122 12332 346799999 67766654332 344432 2210 01222321223456
Q ss_pred EEEEEe-------CCCCEEEEEEcCCeEEEEECCCC-cEE---EEc-ccCCCeEEEEEeCCCCEEEEEe
Q 003840 727 HSCVFH-------PTYPSLLVIGCYQSLELWNMSEN-KTM---TLT-AHEGLIAALAVSTETGYVASAS 783 (792)
Q Consensus 727 ~si~fs-------pdg~~L~sgs~dg~I~IwDl~~~-~~~---~~~-~h~~~V~sl~fspdg~~LaSgs 783 (792)
..++|. .++.++++.-..+.|..+++... +.. .+. .....+..+++.|||.++++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 778883 45655555555568988888753 332 222 2246789999999998777664
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.94 E-value=0.0015 Score=70.64 Aligned_cols=193 Identities=9% Similarity=0.050 Sum_probs=109.7
Q ss_pred CEEEEEECCCCCeEEEE------------eCCCcEEEEeCCCCCceeEE--ecc-----cCCCeEEEEEcC--CCC-eEE
Q 003840 556 LITDVRFSPSMPRLATS------------SFDKTVRVWDADNPGYSLRT--FMG-----HSASVMSLDFHP--NKD-DLI 613 (792)
Q Consensus 556 ~V~~i~fspdg~~Lasg------------s~Dg~V~IWdl~s~~~~i~~--~~~-----h~~~V~sl~fsp--d~~-~ll 613 (792)
...+|...++|..++++ ..+|.|.+||+.+....... +.+ .......|.+.+ ++. +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34455666665443333 26899999999753222222 222 234677888866 344 344
Q ss_pred EEEeC--CCcEEEEEcCCC--e--eEEEeeC----CeeEEEEecCCCEEEEEE-----------------cCCeEEEEEC
Q 003840 614 CSCDG--DGEIRYWSINNG--S--CTRVFKG----GTAQMRFQPHLGRYLAAA-----------------AENVVSILDA 666 (792)
Q Consensus 614 ~sgs~--Dg~I~iwdl~~~--~--~~~~~~~----~~~~v~~sp~~~~lla~s-----------------~dg~I~i~D~ 666 (792)
++-.. +..|.+|++... . .+..+.+ ..+.+.+.+++..+++.. ..|.|+.||.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 467778777653 2 2223332 356788888866555432 1245666666
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeC-CCCEEEEEEc
Q 003840 667 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-TYPSLLVIGC 743 (792)
Q Consensus 667 ~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp-dg~~L~sgs~ 743 (792)
..-+.+ .. .-..-+.|+|+||+++|+.+... .|..|++.........+.+ ........+++.+ +|++.+++..
T Consensus 211 ~~~~~~--~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 211 NDVRVV--AE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp TCCEEE--EE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred CeEEEe--ec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 422221 21 22346889999999988777654 8999998643222223333 2346678899999 5887766654
Q ss_pred CC-eEEEEEC
Q 003840 744 YQ-SLELWNM 752 (792)
Q Consensus 744 dg-~I~IwDl 752 (792)
++ .|..|+.
T Consensus 287 ~g~~v~~~~P 296 (355)
T 3sre_A 287 NGMRIFFYDA 296 (355)
T ss_dssp CHHHHHSCCT
T ss_pred CceEEEEECC
Confidence 42 3444443
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.93 E-value=0.0028 Score=67.23 Aligned_cols=200 Identities=9% Similarity=0.096 Sum_probs=122.3
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEE-ecc----CC--CCEEEEEE---CCCCCeEEEEe---
Q 003840 508 VRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTN-LEE----HS--SLITDVRF---SPSMPRLATSS--- 573 (792)
Q Consensus 508 l~~H~~~V~~lafspdg~~Lasgs-~Dg~I~vWdl~t~~~~~~-l~~----h~--~~V~~i~f---spdg~~Lasgs--- 573 (792)
+....-...|++|++....|..++ ..+.|..||...+..... +.+ .. ..+..|.| .++++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 344455567899988555666655 799999999986544333 222 11 13689999 68877777543
Q ss_pred ----------CCCcEEEEeCC---CCCcee-EEeccc-----------CCCeEEEEEcCCCCeEEEEEeCC-CcEEEEEc
Q 003840 574 ----------FDKTVRVWDAD---NPGYSL-RTFMGH-----------SASVMSLDFHPNKDDLICSCDGD-GEIRYWSI 627 (792)
Q Consensus 574 ----------~Dg~V~IWdl~---s~~~~i-~~~~~h-----------~~~V~sl~fspd~~~ll~sgs~D-g~I~iwdl 627 (792)
.+..|..||+. ++.... ..+... ...+..+++.++|+.++ +++.. +.|..++.
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYV-t~s~~~~~I~rV~p 166 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYV-AFALGMPAIARVSA 166 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEE-EEEESSCEEEEECT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEE-eCCCCCCeEEEEeC
Confidence 26779999998 533222 222211 12478999999987555 67767 77777776
Q ss_pred CCCeeEEEee--------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEec--CC---CCCeEEE-EEcCCCC
Q 003840 628 NNGSCTRVFK--------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQ--GH---TKPIDSV-CWDPSGE 692 (792)
Q Consensus 628 ~~~~~~~~~~--------~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~-~~~l~--~h---~~~V~sv-~~spdg~ 692 (792)
........+. ...+-+++.|++..|++....+.|..+|+++... ...+. +. -.....| ....+|+
T Consensus 167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 167 DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence 6442221111 1245799999999999998899999999885432 01111 21 1123333 3334777
Q ss_pred EEEE-EeCC-eEEEEECC
Q 003840 693 LLAS-VSED-SVRVWTVG 708 (792)
Q Consensus 693 ~Las-~s~d-~I~IwDl~ 708 (792)
.|++ .... .+.+.+..
T Consensus 247 vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSWD 264 (334)
T ss_dssp EEEEEEETTEEEEEECSS
T ss_pred EEEEEcCCCCEEEEECCC
Confidence 7444 4444 45555443
No 307
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.91 E-value=0.0051 Score=76.79 Aligned_cols=271 Identities=13% Similarity=0.111 Sum_probs=145.3
Q ss_pred CCCeEEEEEcCC------CCEEEEEeC-CCeEEEEECCCCceeEEecc-CCCCEEEEEEC--CCCCeEEEEeCCCcEEEE
Q 003840 512 TSKVICCHFSSD------GKLLATGGH-DKKAVLWHTDTLKSKTNLEE-HSSLITDVRFS--PSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 512 ~~~V~~lafspd------g~~Lasgs~-Dg~I~vWdl~t~~~~~~l~~-h~~~V~~i~fs--pdg~~Lasgs~Dg~V~IW 581 (792)
...|.|+++.+. ++++|+|.. |++|+|+++.+.+.+....- ......+|.+. ....+|.+|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 567999999863 369999997 99999999998776654321 11233444333 233578999999988777
Q ss_pred eCCCC-Ccee--E-EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC-Ce-eEEEEecCC--CEEE
Q 003840 582 DADNP-GYSL--R-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-GT-AQMRFQPHL--GRYL 653 (792)
Q Consensus 582 dl~s~-~~~i--~-~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-~~-~~v~~sp~~--~~ll 653 (792)
.++.. +... + .+.+ ..++.=..|...+...+++++ +.-..+|.-+..-....+.. .+ ....|+... +.++
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v 710 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLA 710 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEE
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEE
Confidence 66531 2221 1 2222 345544444444444444444 44444444332211111111 12 223344322 3344
Q ss_pred EEEcCCeEEEEECCCCe--EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------------------------------
Q 003840 654 AAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED------------------------------- 700 (792)
Q Consensus 654 a~s~dg~I~i~D~~t~~--~~~~l~~h~~~V~sv~~spdg~~Las~s~d------------------------------- 700 (792)
+..++.++|.-+.+.. .+.++. -...++.++++|+.+.++.+..+
T Consensus 711 -~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1158)
T 3ei3_A 711 -LANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKL 788 (1158)
T ss_dssp -EECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCC
T ss_pred -EEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccc
Confidence 4445568887765431 222222 23457778888876654443311
Q ss_pred -------------------eEEEEECCCCCCcceEEEeecCCCc-eEEEE---EeCC-CCEEEEEE----------cCCe
Q 003840 701 -------------------SVRVWTVGSGSEGECVHELSCNGNK-FHSCV---FHPT-YPSLLVIG----------CYQS 746 (792)
Q Consensus 701 -------------------~I~IwDl~s~~~~~~i~~~~~~~~~-i~si~---fspd-g~~L~sgs----------~dg~ 746 (792)
.|+++|-.+. ..+..+.-..+. +.+++ |..+ ..+|++|+ ..|.
T Consensus 789 ~~~~~~~~~~~~g~~~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr 865 (1158)
T 3ei3_A 789 FSSSTAPHETSFGEEVEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR 865 (1158)
T ss_dssp C----------CCCEEEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred ccccccCchhhcCCceeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence 2445554333 333333322222 33333 3222 46888887 2478
Q ss_pred EEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 747 LELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 747 I~IwDl~~~~~~--~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
|++|++.+++.. .....++.|++++-- +|++||+. ..+|+||+
T Consensus 866 i~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~ 910 (1158)
T 3ei3_A 866 IVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYE 910 (1158)
T ss_dssp EEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEE
T ss_pred EEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEE
Confidence 999999765544 333557889998744 45444433 46788875
No 308
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.90 E-value=0.0026 Score=68.10 Aligned_cols=179 Identities=9% Similarity=0.179 Sum_probs=116.6
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeEEEee-CCeeEEEEecC----CCE--E-EEEEc---CCeEEEEEC--CCCeEEEEecC
Q 003840 611 DLICSCDGDGEIRYWSINNGSCTRVFK-GGTAQMRFQPH----LGR--Y-LAAAA---ENVVSILDA--ETQACRLSLQG 677 (792)
Q Consensus 611 ~ll~sgs~Dg~I~iwdl~~~~~~~~~~-~~~~~v~~sp~----~~~--l-la~s~---dg~I~i~D~--~t~~~~~~l~~ 677 (792)
.+++...+++-+.+||+ .++.+..+. +..+.+.+-+. +.. + ++... ++.|.+|++ .++. +..+..
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~ 118 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTD 118 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSC
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccc
Confidence 35657777889999999 788887776 45555555542 222 3 33333 478999966 3443 444421
Q ss_pred ------CC-CCeEEEEE--cCC-CC-EEEEEeCC-eEEEEECCCC----CCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003840 678 ------HT-KPIDSVCW--DPS-GE-LLASVSED-SVRVWTVGSG----SEGECVHELSCNGNKFHSCVFHPTYPSLLVI 741 (792)
Q Consensus 678 ------h~-~~V~sv~~--spd-g~-~Las~s~d-~I~IwDl~s~----~~~~~i~~~~~~~~~i~si~fspdg~~L~sg 741 (792)
.. ..+..+|+ ++. ++ ++++...+ .+..|++... -..+.++++.. ...+..|++.+....|+++
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~ 197 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIA 197 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEe
Confidence 11 45667787 774 54 55556555 8888888432 12355666664 4578999999999999999
Q ss_pred EcCCeEEEEECC-----CCcEEEEccc---CCCeEEEEEe--CCCC-EEEEEe-CCCcEEEeC
Q 003840 742 GCYQSLELWNMS-----ENKTMTLTAH---EGLIAALAVS--TETG-YVASAS-HDKFVKLWK 792 (792)
Q Consensus 742 s~dg~I~IwDl~-----~~~~~~~~~h---~~~V~sl~fs--pdg~-~LaSgs-~DG~I~IWd 792 (792)
-.+..|+.|+.+ +++.+...+. ...+..|++- ++++ ||++++ .+..+.|||
T Consensus 198 eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 198 EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp ETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred cccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 999888888865 3445544322 2468888884 5555 666665 466787775
No 309
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.85 E-value=0.0013 Score=68.85 Aligned_cols=227 Identities=11% Similarity=0.040 Sum_probs=116.6
Q ss_pred CCCEEEEEe-CC-----CeEEEEECCCCceeEE--eccCCCCEEEEEECCCCCeEEEEeCC-----CcEEEEeCCCCC--
Q 003840 523 DGKLLATGG-HD-----KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPG-- 587 (792)
Q Consensus 523 dg~~Lasgs-~D-----g~I~vWdl~t~~~~~~--l~~h~~~V~~i~fspdg~~Lasgs~D-----g~V~IWdl~s~~-- 587 (792)
++.+++.|+ .+ ..+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 344566666 32 4688899877653221 2221222222232 56677888765 468999998744
Q ss_pred -ceeE-EecccCCCeEEEEEcCCCCeEEEEEeCC-----CcEEEEEcCCCeeEEEee--CC-eeEEEEecCCCEEEEEEc
Q 003840 588 -YSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFK--GG-TAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 588 -~~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~--~~-~~~v~~sp~~~~lla~s~ 657 (792)
.... .+........++.+ ++.+++.|+.+ ..+.+||+.+.+....-. .. ....+...++..++.|+.
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 168 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY 168 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCB
T ss_pred eeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCC
Confidence 2211 11111122222222 34566677654 368899998876554322 11 111222224444555554
Q ss_pred C-----CeEEEEECCCCeEEEEe--cCCCCCeEEEEEcCCCCEEEEEeC------CeEEEEECCCCCCcceEEEeecCCC
Q 003840 658 E-----NVVSILDAETQACRLSL--QGHTKPIDSVCWDPSGELLASVSE------DSVRVWTVGSGSEGECVHELSCNGN 724 (792)
Q Consensus 658 d-----g~I~i~D~~t~~~~~~l--~~h~~~V~sv~~spdg~~Las~s~------d~I~IwDl~s~~~~~~i~~~~~~~~ 724 (792)
+ ..+.+||+.+.+-...- ........++. -++++++.|+. +.+.+||+.+.. ...+..+.....
T Consensus 169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~ 245 (301)
T 2vpj_A 169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDS-WTTVTSMTTPRC 245 (301)
T ss_dssp CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE-EEEECCCSSCCB
T ss_pred CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCc-EEECCCCCCccc
Confidence 3 46899999887544321 11111112222 25666666653 268999997642 222222222111
Q ss_pred ceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEE
Q 003840 725 KFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMT 759 (792)
Q Consensus 725 ~i~si~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~ 759 (792)
....+. -+++.++.|+.+ ..|.+||+.+.+...
T Consensus 246 ~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 246 YVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp SCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred ceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 222222 266667777665 368899998876543
No 310
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.82 E-value=0.0047 Score=66.82 Aligned_cols=232 Identities=12% Similarity=0.100 Sum_probs=126.5
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC-ceeE----EecccCCCeEEEEEcCC---CCeEEEEEeC-------
Q 003840 554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-YSLR----TFMGHSASVMSLDFHPN---KDDLICSCDG------- 618 (792)
Q Consensus 554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~-~~i~----~~~~h~~~V~sl~fspd---~~~ll~sgs~------- 618 (792)
-...+.|+|.|+++.|+++...|.|++++.+... ..+. .+.........|+|+|+ +..++++-..
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 3457899999999845556678999999854210 0111 11122345789999996 5555555433
Q ss_pred CCcEEEEEcCCC--e--eEE-EeeC---------CeeEEEEecCCCEEEEEEcC--------------CeEEEEECCCC-
Q 003840 619 DGEIRYWSINNG--S--CTR-VFKG---------GTAQMRFQPHLGRYLAAAAE--------------NVVSILDAETQ- 669 (792)
Q Consensus 619 Dg~I~iwdl~~~--~--~~~-~~~~---------~~~~v~~sp~~~~lla~s~d--------------g~I~i~D~~t~- 669 (792)
...|..|++... . ..+ .+.. ....+.|.|++ +|+++..+ |.|.-+|.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 235666776543 1 111 1111 13469999987 45444433 46777776532
Q ss_pred -------------eEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC--eEEEEECCCCCC---------------------
Q 003840 670 -------------ACRLSLQGHTKPIDSVCWDP-SGELLASVSED--SVRVWTVGSGSE--------------------- 712 (792)
Q Consensus 670 -------------~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d--~I~IwDl~s~~~--------------------- 712 (792)
..+.. .++ .....++|++ +|+++++-... .=.|.-+..+..
T Consensus 176 p~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 11111 122 3467899999 66665553321 112222222111
Q ss_pred -------cceEEEeecCCCceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCcEE---EEc-ccCCCeEEEEEeC
Q 003840 713 -------GECVHELSCNGNKFHSCVFHP-------TYPSLLVIGCYQSLELWNMSENKTM---TLT-AHEGLIAALAVST 774 (792)
Q Consensus 713 -------~~~i~~~~~~~~~i~si~fsp-------dg~~L~sgs~dg~I~IwDl~~~~~~---~~~-~h~~~V~sl~fsp 774 (792)
...+..+. +......++|.. ++.++++.-..+.|..+++..++.. .+. .....+..+++.|
T Consensus 254 ~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP 332 (353)
T ss_dssp BSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred CCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence 01111122 123466677764 4555555555678888888766543 222 2345799999999
Q ss_pred CCCEEEEEe-CCCcEE
Q 003840 775 ETGYVASAS-HDKFVK 789 (792)
Q Consensus 775 dg~~LaSgs-~DG~I~ 789 (792)
||.++++.. .+|.|.
T Consensus 333 dG~lyv~td~~~g~I~ 348 (353)
T 2g8s_A 333 DGYLYVLTDESSGELL 348 (353)
T ss_dssp TSCEEEEECSTTEEEE
T ss_pred CCcEEEEEeCCCCEEE
Confidence 998766543 355543
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.80 E-value=0.0097 Score=64.22 Aligned_cols=190 Identities=13% Similarity=0.096 Sum_probs=114.3
Q ss_pred CeEEEEEcCCCCEEEEE------------eCCCeEEEEECCC--Ccee-EEecc-----CCCCEEEEEECC--CCC-eEE
Q 003840 514 KVICCHFSSDGKLLATG------------GHDKKAVLWHTDT--LKSK-TNLEE-----HSSLITDVRFSP--SMP-RLA 570 (792)
Q Consensus 514 ~V~~lafspdg~~Lasg------------s~Dg~I~vWdl~t--~~~~-~~l~~-----h~~~V~~i~fsp--dg~-~La 570 (792)
....+++.++|..++++ ..+|.|.+||.++ .+.. ..+.+ .......|.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45566778887554444 1689999999874 2221 12222 234567777755 454 344
Q ss_pred EE-eC--CCcEEEEeCCCCCceeE---Eeccc-CCCeEEEEEcCCCCeEEEEEe-----------------CCCcEEEEE
Q 003840 571 TS-SF--DKTVRVWDADNPGYSLR---TFMGH-SASVMSLDFHPNKDDLICSCD-----------------GDGEIRYWS 626 (792)
Q Consensus 571 sg-s~--Dg~V~IWdl~s~~~~i~---~~~~h-~~~V~sl~fspd~~~ll~sgs-----------------~Dg~I~iwd 626 (792)
++ .. +..|.||+++..+.... .+.+. -...+++.+.++|. ++++.. ..|.|+.||
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 44 33 56788988876443332 33322 24578999999876 333433 124555555
Q ss_pred cCCCeeEEEee--CCeeEEEEecCCCEEEEEEc-CCeEEEEECCC-CeE--EEEecCCCCCeEEEEEcC-CCCEEEEEeC
Q 003840 627 INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAET-QAC--RLSLQGHTKPIDSVCWDP-SGELLASVSE 699 (792)
Q Consensus 627 l~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t-~~~--~~~l~~h~~~V~sv~~sp-dg~~Las~s~ 699 (792)
. +++..... ...+.++|+|+++.++++.. .+.|..||+.. ++. ...+ ........+++++ +|++++++..
T Consensus 210 ~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 210 P--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp T--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred C--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 5 33332222 34677999999998888775 68999999863 322 2233 2345677899999 5998887765
Q ss_pred C--eEEEEEC
Q 003840 700 D--SVRVWTV 707 (792)
Q Consensus 700 d--~I~IwDl 707 (792)
+ .|..|+-
T Consensus 287 ~g~~v~~~~P 296 (355)
T 3sre_A 287 NGMRIFFYDA 296 (355)
T ss_dssp CHHHHHSCCT
T ss_pred CceEEEEECC
Confidence 5 4555544
No 312
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.78 E-value=0.052 Score=67.73 Aligned_cols=226 Identities=10% Similarity=0.029 Sum_probs=130.7
Q ss_pred EEEEECCC--CCeEEEEeCCCcEEEEeCCCCCc-eeEEecccCCCeEEEEEcCCCCeEEEEEeC----------------
Q 003840 558 TDVRFSPS--MPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDG---------------- 618 (792)
Q Consensus 558 ~~i~fspd--g~~Lasgs~Dg~V~IWdl~s~~~-~i~~~~~h~~~V~sl~fspd~~~ll~sgs~---------------- 618 (792)
....|+.. ..-|+..+ ++.++|..+++... .++++ .-...+..|+++|..+.+++.++.
T Consensus 696 ~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 773 (1158)
T 3ei3_A 696 YMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPS 773 (1158)
T ss_dssp EEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCC
T ss_pred eEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEE-eCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhh
Confidence 34455442 12344443 45599988865322 22333 244677888888876655443321
Q ss_pred --------------------------------CCcEEEEEcCCCeeEEEeeC----CeeEEE---EecC-CCEEEEEEc-
Q 003840 619 --------------------------------DGEIRYWSINNGSCTRVFKG----GTAQMR---FQPH-LGRYLAAAA- 657 (792)
Q Consensus 619 --------------------------------Dg~I~iwdl~~~~~~~~~~~----~~~~v~---~sp~-~~~lla~s~- 657 (792)
-+.|+++|-.+.+.+..+.- .+.+++ |..+ ..++++|+.
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~ 853 (1158)
T 3ei3_A 774 ASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAM 853 (1158)
T ss_dssp HHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEE
T ss_pred hhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeee
Confidence 12366777777766655432 122222 2222 356777762
Q ss_pred ---------CCeEEEEECCCCeEEEEe-cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceE
Q 003840 658 ---------ENVVSILDAETQACRLSL-QGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFH 727 (792)
Q Consensus 658 ---------dg~I~i~D~~t~~~~~~l-~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~ 727 (792)
.|.|++|++..++..... ...+++|++++-- +| +|+++-...|++|++...+... ....... .+.
T Consensus 854 ~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~--~~~~~~~-~i~ 928 (1158)
T 3ei3_A 854 VYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR--TECNHYN-NIM 928 (1158)
T ss_dssp CCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE--EEEEECC-CSC
T ss_pred cCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE--EEeeccc-cEE
Confidence 478999998755433222 1246788888754 34 5666666689999997543222 1111111 133
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEE--ECCCCcEEEEc--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 728 SCVFHPTYPSLLVIGCYQSLELW--NMSENKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 728 si~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~~~~--~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
.+.....+++|++|..-..|.++ +...++...+. .+..+++++.|-.++ .++.+..+|.|.++
T Consensus 929 ~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 929 ALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVC 995 (1158)
T ss_dssp EEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEE
T ss_pred EEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEE
Confidence 33333457789999988877665 45555555333 456688899887554 67778889998875
No 313
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.77 E-value=0.0069 Score=64.29 Aligned_cols=206 Identities=11% Similarity=0.101 Sum_probs=127.6
Q ss_pred ccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCceeEEecc----cC--CCeEEEEE---cCCCCeEEEEEe---
Q 003840 551 EEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMG----HS--ASVMSLDF---HPNKDDLICSCD--- 617 (792)
Q Consensus 551 ~~h~~~V~~i~fspdg~~Lasgs-~Dg~V~IWdl~s~~~~i~~~~~----h~--~~V~sl~f---spd~~~ll~sgs--- 617 (792)
......-.+++|.+....|+.++ ..++|..||...+......+.+ .. ..+..|.| .++ ..|+++..
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~ 87 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAK 87 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccc
Confidence 33444456789988666666666 7999999999753222222222 11 13679999 577 45665443
Q ss_pred ----------CCCcEEEEEcC---CCeeEEEee------C----------CeeEEEEecCCCEEEEEEcC-CeEEEEECC
Q 003840 618 ----------GDGEIRYWSIN---NGSCTRVFK------G----------GTAQMRFQPHLGRYLAAAAE-NVVSILDAE 667 (792)
Q Consensus 618 ----------~Dg~I~iwdl~---~~~~~~~~~------~----------~~~~v~~sp~~~~lla~s~d-g~I~i~D~~ 667 (792)
.+..|..||+. +++.+.... + ....++..++++.+++.+.. +.|..++..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 26789999999 777665443 1 35678999999999988888 898888887
Q ss_pred CCeEEEEe-cC----CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee-c---CCCceEEE-EEeCCCC
Q 003840 668 TQACRLSL-QG----HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-C---NGNKFHSC-VFHPTYP 736 (792)
Q Consensus 668 t~~~~~~l-~~----h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~-~---~~~~i~si-~fspdg~ 736 (792)
.......+ .. .....+.|+++|+|++|++...+ .|..+|+...... .+..-. + .......+ ..-.+|+
T Consensus 168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCE
Confidence 55333222 11 12236799999999988877657 8999998743110 122110 1 11223443 4445777
Q ss_pred EEEEEE-cCCeEEEEECCCCcEE
Q 003840 737 SLLVIG-CYQSLELWNMSENKTM 758 (792)
Q Consensus 737 ~L~sgs-~dg~I~IwDl~~~~~~ 758 (792)
.|+++. ..+.+.+.+.+..+..
T Consensus 247 vllV~~~~~~~~~l~S~DgW~sa 269 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSWDNWKSA 269 (334)
T ss_dssp EEEEEEETTEEEEEECSSTTSEE
T ss_pred EEEEEcCCCCEEEEECCCCccee
Confidence 755554 4556666665554443
No 314
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.77 E-value=9.2e-05 Score=87.94 Aligned_cols=196 Identities=11% Similarity=-0.010 Sum_probs=117.5
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC----CceeEEeccCCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCC
Q 003840 513 SKVICCHFSSDGKLLATGG-HDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs-~Dg~I~vWdl~t----~~~~~~l~~h~~~V~~i~fspdg-~~Lasgs~Dg~V~IWdl~s~ 586 (792)
..+..|+|++.+..|+.+. ..+.|+.+++.. ......+.........|++.+.+ .++++-...+.|.+++++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg- 484 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG- 484 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS-
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC-
Confidence 4567899998776666654 457899999875 22222222222345668887544 4455555678899999875
Q ss_pred CceeEEecccCCCeEEEEEcCCCCeEEEEEeCC-CcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc-CCeE
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA-ENVV 661 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D-g~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~-dg~I 661 (792)
......+.........|++.|.+.+|+++-... +.|.++++........+. .....++|++++++|+++.. .+.|
T Consensus 485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I 564 (699)
T 1n7d_A 485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564 (699)
T ss_dssp CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence 332223332334567899999777666554333 788888876433222222 23456999998887777665 5789
Q ss_pred EEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003840 662 SILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 710 (792)
Q Consensus 662 ~i~D~~t~~~~~~l~--~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~ 710 (792)
.++|+........+. ........|++..+ .++++.... .|..++..++
T Consensus 565 ~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp EEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred EEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 999987543332222 11223345566544 333343333 8989987655
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.75 E-value=0.0037 Score=65.55 Aligned_cols=224 Identities=9% Similarity=0.038 Sum_probs=115.7
Q ss_pred EEEEEeC--CCeEEEEECCCCceeEE--eccCCCCEEEEEECCCCCeEEEEeCC----CcEEEEeCCCCCceeE-Eeccc
Q 003840 526 LLATGGH--DKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD----KTVRVWDADNPGYSLR-TFMGH 596 (792)
Q Consensus 526 ~Lasgs~--Dg~I~vWdl~t~~~~~~--l~~h~~~V~~i~fspdg~~Lasgs~D----g~V~IWdl~s~~~~i~-~~~~h 596 (792)
+++.|+. ...+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+...... .+...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4555654 35788999887653322 2222222223333 56677888765 5688899887332111 11111
Q ss_pred CCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcCCCeeEEEeeC--C-eeEEEEecCCCEEEEEEc---------C
Q 003840 597 SASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFKG--G-TAQMRFQPHLGRYLAAAA---------E 658 (792)
Q Consensus 597 ~~~V~sl~fspd~~~ll~sgs~D------g~I~iwdl~~~~~~~~~~~--~-~~~v~~sp~~~~lla~s~---------d 658 (792)
......+.+ ++.+++.|+.+ ..+.+||+.+.+....-.. . ........++..++.++. .
T Consensus 92 r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 92 RDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp CBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEEC
T ss_pred ccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccccc
Confidence 112222222 34576677765 4689999998775543211 1 111122224444444443 3
Q ss_pred CeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeC------CeEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 003840 659 NVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSE------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVF 731 (792)
Q Consensus 659 g~I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~------d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~f 731 (792)
..+.+||..+.+-...-.. ....-.+++.. ++++++.|+. +.+.+||+.+.. ...+..+.........+.+
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~ 246 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAAV 246 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEEE
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEEE
Confidence 4688999988754332111 11111222222 5666666553 258899987641 2222222221222223333
Q ss_pred eCCCCEEEEEEcC-----CeEEEEECCCCcEE
Q 003840 732 HPTYPSLLVIGCY-----QSLELWNMSENKTM 758 (792)
Q Consensus 732 spdg~~L~sgs~d-----g~I~IwDl~~~~~~ 758 (792)
++..+++|+.+ ..|.+||..+.+..
T Consensus 247 --~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 247 --GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp --TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred --CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 66677777754 47999999988755
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.74 E-value=0.06 Score=58.83 Aligned_cols=233 Identities=11% Similarity=0.172 Sum_probs=153.6
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccC
Q 003840 518 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS 597 (792)
Q Consensus 518 lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~ 597 (792)
.-.+|..+.||.=. ...+.|||+++...++.+.-.. .|.-=.|..+. .|+..+ +..|+-|+++....+.+.|..|.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecch
Confidence 44567666666654 6799999999988888776544 45555665443 444443 34599999987667777777654
Q ss_pred ----CCeEEEEEcCCCCeEEEEEe------CCCcEEEEEcCCCeeEEEeeCCeeEEE-EecCC----CEEEEEEc----C
Q 003840 598 ----ASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHL----GRYLAAAA----E 658 (792)
Q Consensus 598 ----~~V~sl~fspd~~~ll~sgs------~Dg~I~iwdl~~~~~~~~~~~~~~~v~-~sp~~----~~lla~s~----d 658 (792)
..|.....+++.+.++++|- -.|.+.+|..+.+. ...++++..+.. +..++ ..+++-.. .
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 45777777888888877664 24778889887543 344555554432 32222 23444333 2
Q ss_pred CeEEEEECCCC--------eEEEEe-cC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc
Q 003840 659 NVVSILDAETQ--------ACRLSL-QG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 725 (792)
Q Consensus 659 g~I~i~D~~t~--------~~~~~l-~~---h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~ 725 (792)
+.++|.++... +....+ .. -.+--.++..++.-.+++..+.. .|++||++++ .++.........
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs~~~ 302 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGET 302 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSSC
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeecccCCc
Confidence 78999988542 111111 11 12334567788877777777776 9999999988 788777777777
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 726 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 726 i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
|...+.+....-+++....|.|.-..+++..++
T Consensus 303 iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred eEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 777777776666777778887777776665543
No 317
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.69 E-value=0.028 Score=60.43 Aligned_cols=232 Identities=13% Similarity=0.111 Sum_probs=128.3
Q ss_pred EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-eeEEe----cccCCCeEEEEEcCC---CCeEEEEE--eC
Q 003840 549 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTF----MGHSASVMSLDFHPN---KDDLICSC--DG 618 (792)
Q Consensus 549 ~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~-~i~~~----~~h~~~V~sl~fspd---~~~ll~sg--s~ 618 (792)
.+...-...+.|+|.|+|++|++--..|.|++++...... .+..+ .........|+|+|+ +..++++- ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 3434455678999999998777766689999998654222 12222 123456889999995 34444332 24
Q ss_pred CCcEEEEEcCCC----------eeE-EEee----CCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC-
Q 003840 619 DGEIRYWSINNG----------SCT-RVFK----GGTAQMRFQPHLGRYLAAAA-------------ENVVSILDAETQ- 669 (792)
Q Consensus 619 Dg~I~iwdl~~~----------~~~-~~~~----~~~~~v~~sp~~~~lla~s~-------------dg~I~i~D~~t~- 669 (792)
++.|.-|.+..+ +.+ ..+. .....+.|.+++..+++.+. .|.|.-++....
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 556777766542 111 1121 12345999999876666542 355555565432
Q ss_pred --------eEEEEecCCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCCC---------------cceEEEeecCCC
Q 003840 670 --------ACRLSLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSE---------------GECVHELSCNGN 724 (792)
Q Consensus 670 --------~~~~~l~~h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s~~~---------------~~~i~~~~~~~~ 724 (792)
..++. .+|. ....++|+|+|.++++-.. + .-.|.-+..+.. ...+..+..+..
T Consensus 186 p~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 186 APGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp CTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred cCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 11222 2343 3457999999887765432 2 222222222211 112222322223
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE----E-EEcccCCCeEEEEEeCCCCEEEEEe
Q 003840 725 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT----M-TLTAHEGLIAALAVSTETGYVASAS 783 (792)
Q Consensus 725 ~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~----~-~~~~h~~~V~sl~fspdg~~LaSgs 783 (792)
....++|.. +..++..-..+.|..+.+..... . .+.+....+.+|++.|||.++++.+
T Consensus 264 ap~G~~~~~-g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYAE-GSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEET-TEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEEc-CceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 456677763 44343333345676666655432 1 2334457899999999998776644
No 318
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.69 E-value=0.077 Score=55.91 Aligned_cols=233 Identities=10% Similarity=0.153 Sum_probs=154.1
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccC
Q 003840 518 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS 597 (792)
Q Consensus 518 lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~ 597 (792)
.-.+|..+.||.-. ...+.|||+++...++.+.-. ..|.-=.|..+. .|+..+. ..|+-|+++....+.+.|..|.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT~-taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSS-EEEEEES-SEEEEEESSTTCCCEEEEECCG
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCC-eEEEEcC-CcEEEEcccCCCCCceeeecch
Confidence 34577777777765 678999999998888877654 467777787554 4444433 4599999987667777777654
Q ss_pred ----CCeEEEEEcCCCCeEEEEEe------CCCcEEEEEcCCCeeEEEeeCCeeEEE-EecCC----CEEEEEEc----C
Q 003840 598 ----ASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHL----GRYLAAAA----E 658 (792)
Q Consensus 598 ----~~V~sl~fspd~~~ll~sgs------~Dg~I~iwdl~~~~~~~~~~~~~~~v~-~sp~~----~~lla~s~----d 658 (792)
..|.....+++.+.++++|- -.|.+.+|..+.+ ....++++..+.. +..++ ..+++-+. .
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 226 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 226 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 45777777888888877664 2467888988754 3344556555532 32222 23444333 2
Q ss_pred CeEEEEECCCC--------e-EEEEecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc
Q 003840 659 NVVSILDAETQ--------A-CRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 725 (792)
Q Consensus 659 g~I~i~D~~t~--------~-~~~~l~~---h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~ 725 (792)
+.++|.++... + .+..+.. -.+--.++..++.-.+++..+.. .|++||++++ .++.........
T Consensus 227 ~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg---t~i~~nrIS~d~ 303 (365)
T 2xzh_A 227 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGET 303 (365)
T ss_dssp EEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSSC
T ss_pred cEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC---cEEEEeccCCCc
Confidence 58899887432 1 1111211 12334567777777777777766 9999999988 788877777777
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 726 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 726 i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
|...+.+....-+++....|.|.-..+++..++
T Consensus 304 iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 304 IFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp EEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred eEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 776676666556777778887777776665543
No 319
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.69 E-value=0.0066 Score=65.63 Aligned_cols=225 Identities=13% Similarity=0.095 Sum_probs=120.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE---e----ccCCCCEEEEEECCC---CCeEEEEe-C-------
Q 003840 513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN---L----EEHSSLITDVRFSPS---MPRLATSS-F------- 574 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~---l----~~h~~~V~~i~fspd---g~~Lasgs-~------- 574 (792)
...+.|+|.|||++|+++...|.|++++.+ +..... + .........|+|+|+ +.+|+++. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 457899999999844455578999999854 332111 1 122356789999996 45555443 2
Q ss_pred CCcEEEEeCCCCCce---eEE-ecc------cCCCeEEEEEcCCCCeEEEEEeC-------------CCcEEEEEcCCCe
Q 003840 575 DKTVRVWDADNPGYS---LRT-FMG------HSASVMSLDFHPNKDDLICSCDG-------------DGEIRYWSINNGS 631 (792)
Q Consensus 575 Dg~V~IWdl~s~~~~---i~~-~~~------h~~~V~sl~fspd~~~ll~sgs~-------------Dg~I~iwdl~~~~ 631 (792)
...|..|++...... ... +.. .......|+|.|++. |+++.+. .|.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 235666776542111 111 111 111235799999984 4444432 2467777765320
Q ss_pred ------------eEEEee---CCeeEEEEecCCCEEEEEEcCC----eEEEEECC--------C----------------
Q 003840 632 ------------CTRVFK---GGTAQMRFQPHLGRYLAAAAEN----VVSILDAE--------T---------------- 668 (792)
Q Consensus 632 ------------~~~~~~---~~~~~v~~sp~~~~lla~s~dg----~I~i~D~~--------t---------------- 668 (792)
....+. .....++|.+..+.|+++.... .|.+...- .
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 112222 1245688999667777665431 23221100 0
Q ss_pred -----CeEEEEecCCCCCeEEEEEcC-------CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003840 669 -----QACRLSLQGHTKPIDSVCWDP-------SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 735 (792)
Q Consensus 669 -----~~~~~~l~~h~~~V~sv~~sp-------dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg 735 (792)
..++..+..| .....++|.. +|.++++.... .|...++..+........+......+..+++.|||
T Consensus 256 ~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG 334 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG 334 (353)
T ss_dssp SCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred CCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence 0111222222 3466777764 46666665555 78888876431111111122334578999999999
Q ss_pred CEEEE
Q 003840 736 PSLLV 740 (792)
Q Consensus 736 ~~L~s 740 (792)
..+++
T Consensus 335 ~lyv~ 339 (353)
T 2g8s_A 335 YLYVL 339 (353)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 84444
No 320
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.64 E-value=0.014 Score=61.55 Aligned_cols=234 Identities=6% Similarity=-0.045 Sum_probs=134.4
Q ss_pred cCCCCEEEEEe--CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC--------------CcEEEEeCC
Q 003840 521 SSDGKLLATGG--HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--------------KTVRVWDAD 584 (792)
Q Consensus 521 spdg~~Lasgs--~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D--------------g~V~IWdl~ 584 (792)
+.+|.+|+... .++.|+..+.+... ...+... .+--|++++.+|+.+... ..|+..+++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 35677777664 35667777765443 3334322 133557788888777543 356666776
Q ss_pred CCCceeEEecccCCCeEEEEEcCCCCeEEEEE---eCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEc-CCe
Q 003840 585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSC---DGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-ENV 660 (792)
Q Consensus 585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sg---s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~-dg~ 660 (792)
... ...+... . +..|+++++.++++- ..+..|+..++......+...... ..++++++.|+..+. ...
T Consensus 97 g~~--~~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~ 168 (302)
T 3s25_A 97 GHG--STVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPKNGQ 168 (302)
T ss_dssp SCC--CEEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEECTTTCC
T ss_pred CCc--ceEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCCCce
Confidence 532 2333221 1 235677788777665 345567777776544444444333 456888888887766 578
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003840 661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~ 737 (792)
|++.++..+.....+.+ ... ..++|++.+|+-...+ .|..-++..... ..+. ...+ ..|+|++.+
T Consensus 169 Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~----~~Lt--~~~~--~~~~~~g~~ 236 (302)
T 3s25_A 169 LYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP----VVLT--EANI--EHYNVYGSL 236 (302)
T ss_dssp EEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC----EECS--CSCE--EEEEEETTE
T ss_pred EEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe----EEEe--CCCc--ceEEECCCE
Confidence 99999887755444432 222 3466889888876543 566666654422 1221 1222 348888998
Q ss_pred EEEEEc--CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 003840 738 LLVIGC--YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 783 (792)
Q Consensus 738 L~sgs~--dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs 783 (792)
|+.+.. .+.|...+++......+... .+..+ ++.+.+|+-..
T Consensus 237 Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~~i--~i~~d~Iy~td 280 (302)
T 3s25_A 237 IFYQRGGDNPALCVVKNDGTGFKELAKG--EFCNI--NVTSQYVYFTD 280 (302)
T ss_dssp EEEEECSSSCEEEEEETTSCCCEEEEES--CEEEE--EECSSEEEEEE
T ss_pred EEEEECCCCcEEEEEECCCCccEEeeCC--ccceE--EEeCCEEEEEE
Confidence 887643 35788888877554433322 23333 33445554443
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.56 E-value=0.006 Score=63.84 Aligned_cols=225 Identities=14% Similarity=0.065 Sum_probs=113.9
Q ss_pred CCEEEEEeCC----CeEEEEECCCCceeEE--eccCCCCEEEEEECCCCCeEEEEeCCC-----cEEEEeCCCCCceeEE
Q 003840 524 GKLLATGGHD----KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFDK-----TVRVWDADNPGYSLRT 592 (792)
Q Consensus 524 g~~Lasgs~D----g~I~vWdl~t~~~~~~--l~~h~~~V~~i~fspdg~~Lasgs~Dg-----~V~IWdl~s~~~~i~~ 592 (792)
+.+++.|+.+ ..+.+||+.+.+-... +......-..+.+ ++.+++.|+.++ .+.+||..+.. ...
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~ 91 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQ--WTS 91 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCc--eee
Confidence 3455556543 4588899887653322 1111111122233 666778887653 58889987632 222
Q ss_pred ecc---cCCCeEEEEEcCCCCeEEEEEeCCC-----cEEEEEcCCCeeEEEee--CCe-eEEEEecCCCEEEEEEc----
Q 003840 593 FMG---HSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNGSCTRVFK--GGT-AQMRFQPHLGRYLAAAA---- 657 (792)
Q Consensus 593 ~~~---h~~~V~sl~fspd~~~ll~sgs~Dg-----~I~iwdl~~~~~~~~~~--~~~-~~v~~sp~~~~lla~s~---- 657 (792)
+.. .......+.+ ++.+++.|+.++ .+.+||+.+.+....-. ... .......++..++.|+.
T Consensus 92 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 168 (302)
T 2xn4_A 92 VANMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVAS 168 (302)
T ss_dssp ECCCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTT
T ss_pred CCCCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCC
Confidence 221 1111222222 245666776553 57889988876554321 111 11112224344444443
Q ss_pred ---CCeEEEEECCCCeEEEE--ecCCCCCeEEEEEcCCCCEEEEEeC------CeEEEEECCCCCCcceEEEeecCCCce
Q 003840 658 ---ENVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSE------DSVRVWTVGSGSEGECVHELSCNGNKF 726 (792)
Q Consensus 658 ---dg~I~i~D~~t~~~~~~--l~~h~~~V~sv~~spdg~~Las~s~------d~I~IwDl~s~~~~~~i~~~~~~~~~i 726 (792)
...+.+||+.+.+-... +....... +++. -++++++.|+. +.+.+||+.+. ....+..+.......
T Consensus 169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 169 RQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTN-AWRQVADMNMCRRNA 245 (302)
T ss_dssp TEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTT-EEEEECCCSSCCBSC
T ss_pred CccccEEEEEeCCCCcEEECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCC-CEeeCCCCCCccccC
Confidence 24688999988754332 11111112 2222 25666666653 25889998764 222222222111111
Q ss_pred EEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEE
Q 003840 727 HSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTL 760 (792)
Q Consensus 727 ~si~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~~ 760 (792)
. ++ .-++..++.|+.++ .|.+||+.+.+...+
T Consensus 246 ~-~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 246 G-VC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp E-EE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred e-EE-EECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 2 22 23666777777653 589999998876544
No 322
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.56 E-value=0.041 Score=59.07 Aligned_cols=236 Identities=10% Similarity=0.046 Sum_probs=125.4
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE--Ee----ccCCCCEEEEEECCC---CCeEEEE--
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NL----EEHSSLITDVRFSPS---MPRLATS-- 572 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~--~l----~~h~~~V~~i~fspd---g~~Lasg-- 572 (792)
.+..+-..-...+.|+|.|||+++++--..|.|++++..+++... .+ .........|+|+|+ +.+|++.
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 334444555678999999999977776558999999876655422 12 123567899999995 3445443
Q ss_pred -eCCCcEEEEeCCCC---------Cce-eEEec-ccCCCeEEEEEcCCCCeEEEEEe------------CCCcEEEEEcC
Q 003840 573 -SFDKTVRVWDADNP---------GYS-LRTFM-GHSASVMSLDFHPNKDDLICSCD------------GDGEIRYWSIN 628 (792)
Q Consensus 573 -s~Dg~V~IWdl~s~---------~~~-i~~~~-~h~~~V~sl~fspd~~~ll~sgs------------~Dg~I~iwdl~ 628 (792)
..++.|.-|.+... .+. +..+. ........|.|.|++..++.+|+ ..|.|.-++..
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 24455666766541 111 11221 11123457999999864443332 13555555544
Q ss_pred CCe-------eEEEeeC---CeeEEEEecCCCEEEEEEc--CCeEEEEECCCCe------------------EEEEecCC
Q 003840 629 NGS-------CTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQA------------------CRLSLQGH 678 (792)
Q Consensus 629 ~~~-------~~~~~~~---~~~~v~~sp~~~~lla~s~--dg~I~i~D~~t~~------------------~~~~l~~h 678 (792)
..- ....+.. ....++|.++ +.|+++.. ++.-.|.-+..+. ++..+..+
T Consensus 183 G~ip~~nPf~~~~i~a~G~RNp~Gla~dp~-G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~ 261 (347)
T 3das_A 183 GEPAPGNPFPGSPVYSYGHRNVQGLAWDDK-QRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD 261 (347)
T ss_dssp SSBCTTCSSTTCCEEEBCCSBCCEEEECTT-CCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred CCccCCCCCCCCeEEeeCCCCcceEEECCC-CCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC
Confidence 220 0112221 2456889886 44555443 2222222111111 12222222
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003840 679 TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVI 741 (792)
Q Consensus 679 ~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~-~~~i~~~~~~~~~i~si~fspdg~~L~sg 741 (792)
......++|. +|.+++..-.. .|....+..... .+....+......+..+++.|||..+++.
T Consensus 262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 2344566665 45666655555 666666654321 12223333445678899999998655444
No 323
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.49 E-value=0.022 Score=60.08 Aligned_cols=178 Identities=8% Similarity=0.019 Sum_probs=109.4
Q ss_pred EEEEcCCCCEEEEEeCC--------------CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe--CCCcEEE
Q 003840 517 CCHFSSDGKLLATGGHD--------------KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS--FDKTVRV 580 (792)
Q Consensus 517 ~lafspdg~~Lasgs~D--------------g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs--~Dg~V~I 580 (792)
|--|+++|++|+.+... ..|+..+++..+... +.... +..|++++++|+... .++.-.|
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceE
Confidence 34567888888877543 467778887665333 32221 226677888888776 3444444
Q ss_pred EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcC--
Q 003840 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE-- 658 (792)
Q Consensus 581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~d-- 658 (792)
|.+...+.....+..+.. +.|+++++.++++......|.+.++..+.....+.+... ..+.|++++++....+
T Consensus 132 y~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~-~~~~P~g~~iy~t~~~~~ 206 (302)
T 3s25_A 132 YRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCY-KPVVLDDTNVYYMDVNRD 206 (302)
T ss_dssp EEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCEE-EEEEEETTEEEEEEGGGT
T ss_pred EEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCcc-ceeeecCCEEEEEEcCCC
Confidence 444333444445544433 456777888887766578899999887766655554433 4466899998887654
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCC
Q 003840 659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGS 709 (792)
Q Consensus 659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s 709 (792)
..|...++...... .+.. ..+ ..|+|++.+|+.+... .|...++.-
T Consensus 207 ~~I~~~~ldG~~~~-~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 207 NAIVHVNINNPNPV-VLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp TEEEEECSSSCCCE-ECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred cEEEEEECCCCCeE-EEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 36777777765432 2221 233 3477888888776432 566666643
No 324
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.40 E-value=0.01 Score=62.16 Aligned_cols=208 Identities=10% Similarity=0.064 Sum_probs=106.3
Q ss_pred CeEEEEeC--CCcEEEEeCCCCCceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCC----CcEEEEEcCCCeeEEEee
Q 003840 567 PRLATSSF--DKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGD----GEIRYWSINNGSCTRVFK 637 (792)
Q Consensus 567 ~~Lasgs~--Dg~V~IWdl~s~~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~D----g~I~iwdl~~~~~~~~~~ 637 (792)
.+++.|+. ...+.+||..+... ..+. ........+.+ ++.+++.|+.+ ..+.+||+.+.+....-.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSW--TDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEE--EECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCE--ecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 35556654 35688899886322 2221 11112222222 34577777755 678899999887554322
Q ss_pred C--C-eeEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEEe---------
Q 003840 638 G--G-TAQMRFQPHLGRYLAAAAE------NVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVS--------- 698 (792)
Q Consensus 638 ~--~-~~~v~~sp~~~~lla~s~d------g~I~i~D~~t~~~~~~l~~h-~~~V~sv~~spdg~~Las~s--------- 698 (792)
. . ........++..++.|+.+ ..+.+||..+.+-...-... ...-.+++. -++++++.|+
T Consensus 88 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 88 PPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCE
T ss_pred CCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccc
Confidence 1 1 1112222244455555544 46899999887543321111 111112222 2566666665
Q ss_pred -CCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEEccc---CCCeEE
Q 003840 699 -EDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAH---EGLIAA 769 (792)
Q Consensus 699 -~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~~~~h---~~~V~s 769 (792)
.+.+.+||+.+. ....+..+..... -.+++.. +++.+++|+.+ ..|.+||+.+.+...+... .....+
T Consensus 167 ~~~~~~~yd~~~~-~W~~~~~~p~~r~-~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 167 VLNSCEVYDPATE-TWTELCPMIEARK-NHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243 (306)
T ss_dssp ECCCEEEEETTTT-EEEEECCCSSCCB-SCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred ccceEEEeCCCCC-eEEECCCccchhh-cceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence 235889998764 1222222221111 1222222 56666666543 4689999998876644321 112223
Q ss_pred EEEeCCCCEEEEEeCC
Q 003840 770 LAVSTETGYVASASHD 785 (792)
Q Consensus 770 l~fspdg~~LaSgs~D 785 (792)
+.+ ++++++.|+.+
T Consensus 244 ~~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 244 AAV--GSIVYVLAGFQ 257 (306)
T ss_dssp EEE--TTEEEEEECBC
T ss_pred EEE--CCEEEEEeCcC
Confidence 333 67788888765
No 325
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.40 E-value=0.0052 Score=64.19 Aligned_cols=210 Identities=13% Similarity=0.074 Sum_probs=105.8
Q ss_pred CCCeEEEEe-CC-----CcEEEEeCCCCCceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCC-----CcEEEEEcCCC
Q 003840 565 SMPRLATSS-FD-----KTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNG 630 (792)
Q Consensus 565 dg~~Lasgs-~D-----g~V~IWdl~s~~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~D-----g~I~iwdl~~~ 630 (792)
++.+++.|+ .+ ..+.+||+.+.. ...+. ........+.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQE--WSFLPSITRKRRYVASVSL---HDRIYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCe--EEeCCCCChhhccccEEEE---CCEEEEEcCCCCCccCceEEEEECCCC
Confidence 444666666 32 358888887632 22221 11111222222 24577677754 46899999887
Q ss_pred e---eEEEee--CC-eeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEE--EecCCCCCeEEEEEcCCCCEEEEE
Q 003840 631 S---CTRVFK--GG-TAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASV 697 (792)
Q Consensus 631 ~---~~~~~~--~~-~~~v~~sp~~~~lla~s~d-----g~I~i~D~~t~~~~~--~l~~h~~~V~sv~~spdg~~Las~ 697 (792)
+ ....-. .. ........++..++.|+.+ ..+.+||..+.+-.. .+....... +++. -++++++.|
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~G 166 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA-GLVV-ASGVIYCLG 166 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC-EEEE-ETTEEEEEC
T ss_pred CCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc-eEEE-ECCEEEEEC
Confidence 6 433321 11 1111222244444455432 478999998865332 222111112 2222 256666666
Q ss_pred eC------CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEEcccC--
Q 003840 698 SE------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHE-- 764 (792)
Q Consensus 698 s~------d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~~~~h~-- 764 (792)
+. +.+.+||+.+. ....+..+.........+. -++..+++|+.+ ..|.+||+.+.+...+....
T Consensus 167 G~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 243 (301)
T 2vpj_A 167 GYDGLNILNSVEKYDPHTG-HWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243 (301)
T ss_dssp CBCSSCBCCCEEEEETTTT-EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred CCCCCcccceEEEEeCCCC-cEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc
Confidence 53 25889998764 2222222221111122222 256666777654 47999999988766543211
Q ss_pred -CCeEEEEEeCCCCEEEEEeCCC
Q 003840 765 -GLIAALAVSTETGYVASASHDK 786 (792)
Q Consensus 765 -~~V~sl~fspdg~~LaSgs~DG 786 (792)
....++. -++++++.|+.++
T Consensus 244 r~~~~~~~--~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 244 RCYVGATV--LRGRLYAIAGYDG 264 (301)
T ss_dssp CBSCEEEE--ETTEEEEECCBCS
T ss_pred ccceeEEE--ECCEEEEEcCcCC
Confidence 1112222 2677777777653
No 326
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.36 E-value=0.013 Score=61.29 Aligned_cols=212 Identities=9% Similarity=0.004 Sum_probs=105.6
Q ss_pred CCeEEEEeCC----CcEEEEeCCCCCceeEEecccCC--CeEEEEEcCCCCeEEEEEeCC-----CcEEEEEcCCCeeEE
Q 003840 566 MPRLATSSFD----KTVRVWDADNPGYSLRTFMGHSA--SVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTR 634 (792)
Q Consensus 566 g~~Lasgs~D----g~V~IWdl~s~~~~i~~~~~h~~--~V~sl~fspd~~~ll~sgs~D-----g~I~iwdl~~~~~~~ 634 (792)
+.+++.|+.+ ..+.+||+.+.. ...+..... .-.+++.. ++.+++.|+.+ ..+.+||+.+.+...
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 91 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEER--WHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS 91 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCc--EeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceee
Confidence 3455555543 357888887632 222211111 11122222 34577677654 358899998876554
Q ss_pred EeeC--C-eeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeC------
Q 003840 635 VFKG--G-TAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSE------ 699 (792)
Q Consensus 635 ~~~~--~-~~~v~~sp~~~~lla~s~d-----g~I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~------ 699 (792)
.-.. . ........++..+++|+.+ ..+.+||+.+.+-...-.. ....-.+++. -++++++.|+.
T Consensus 92 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 92 VANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQ 170 (302)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTE
T ss_pred CCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCc
Confidence 3221 1 1111222344555666654 3688899887754332111 1111122222 25666666542
Q ss_pred --CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEEcccCCC--eEEE
Q 003840 700 --DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHEGL--IAAL 770 (792)
Q Consensus 700 --d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~~~~h~~~--V~sl 770 (792)
+.+.+||+.+.. ...+..+....... +++. -++..+++|+.+ ..+.+||+.+.+...+...... -.++
T Consensus 171 ~~~~~~~yd~~~~~-W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~ 247 (302)
T 2xn4_A 171 CLSTVECYNATTNE-WTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV 247 (302)
T ss_dssp ECCCEEEEETTTTE-EEEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred cccEEEEEeCCCCc-EEECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeE
Confidence 258899987641 22222222111112 2222 256667777654 3799999998876654422111 1122
Q ss_pred EEeCCCCEEEEEeCCC
Q 003840 771 AVSTETGYVASASHDK 786 (792)
Q Consensus 771 ~fspdg~~LaSgs~DG 786 (792)
+ .-++++++.|+.++
T Consensus 248 ~-~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 248 C-AVNGLLYVVGGDDG 262 (302)
T ss_dssp E-EETTEEEEECCBCS
T ss_pred E-EECCEEEEECCcCC
Confidence 2 23677777887654
No 327
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.35 E-value=0.0059 Score=64.26 Aligned_cols=227 Identities=9% Similarity=0.009 Sum_probs=114.9
Q ss_pred CCCCEEEEEeCC----CeEEEEECCCCceeEE--eccCCCCEEEEEECCCCCeEEEEeC----C-----CcEEEEeCCCC
Q 003840 522 SDGKLLATGGHD----KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSF----D-----KTVRVWDADNP 586 (792)
Q Consensus 522 pdg~~Lasgs~D----g~I~vWdl~t~~~~~~--l~~h~~~V~~i~fspdg~~Lasgs~----D-----g~V~IWdl~s~ 586 (792)
-++.+++.|+.+ ..+.+||..+.+-... +.........+.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 355677777642 4688999887653322 1111111222222 5667777776 2 45888998763
Q ss_pred CceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCC-----CcEEEEEcCCCeeEEEee--CCe-eEEEEecCCCEEEEE
Q 003840 587 GYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFK--GGT-AQMRFQPHLGRYLAA 655 (792)
Q Consensus 587 ~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~--~~~-~~v~~sp~~~~lla~ 655 (792)
. ...+. ........+.+ +..+++.|+.+ ..+.+||+.+.+....-. ... .......++..++.|
T Consensus 101 ~--W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 175 (308)
T 1zgk_A 101 Q--WSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVG 175 (308)
T ss_dssp E--EEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred e--EeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEe
Confidence 2 22221 11112222223 24566666643 468899998876544321 111 111112244444555
Q ss_pred EcC-----CeEEEEECCCCeEEEE--ecCCCCCeEEEEEcCCCCEEEEEeC------CeEEEEECCCCCCcceEEEeecC
Q 003840 656 AAE-----NVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSE------DSVRVWTVGSGSEGECVHELSCN 722 (792)
Q Consensus 656 s~d-----g~I~i~D~~t~~~~~~--l~~h~~~V~sv~~spdg~~Las~s~------d~I~IwDl~s~~~~~~i~~~~~~ 722 (792)
+.+ ..+.+||+.+.+-... +....... +++.. ++++++.|+. +.+.+||+.+.. ...+..+...
T Consensus 176 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~ 252 (308)
T 1zgk_A 176 GFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET-WTFVAPMKHR 252 (308)
T ss_dssp CBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE-EEECCCCSSC
T ss_pred CCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc-EEECCCCCCC
Confidence 443 4689999987754322 11111112 22222 5666666653 258999987641 2222222211
Q ss_pred CCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEE
Q 003840 723 GNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTL 760 (792)
Q Consensus 723 ~~~i~si~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~~ 760 (792)
.... +++. -+++.++.|+.+ ..|.+||+.+.+...+
T Consensus 253 r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 253 RSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp CBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred ccce-EEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 1112 2222 256667777654 3688999988775543
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.34 E-value=0.033 Score=58.52 Aligned_cols=225 Identities=8% Similarity=0.011 Sum_probs=113.8
Q ss_pred EEEEEeCCCeEEEEECCCCceeE-EeccCCCCEEEEEECCCCCeEEEEeC----C-------CcEEEEeCCCCCceeEEe
Q 003840 526 LLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSF----D-------KTVRVWDADNPGYSLRTF 593 (792)
Q Consensus 526 ~Lasgs~Dg~I~vWdl~t~~~~~-~l~~h~~~V~~i~fspdg~~Lasgs~----D-------g~V~IWdl~s~~~~i~~~ 593 (792)
+++.|+ ..+.+||..+.+-.. .+..........+...++.+++.|+. + ..+.+||..+.. ...+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE--WLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE--EEEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe--EEEC
Confidence 344555 579999998876432 22222223333344457778888874 1 127788887632 2222
Q ss_pred cccCCCe--EEEEEcCCCCeEEEEEeCC--------CcEEEEEcCCCeeEEEee--CC-eeEEEEecCCCEEEEEEc---
Q 003840 594 MGHSASV--MSLDFHPNKDDLICSCDGD--------GEIRYWSINNGSCTRVFK--GG-TAQMRFQPHLGRYLAAAA--- 657 (792)
Q Consensus 594 ~~h~~~V--~sl~fspd~~~ll~sgs~D--------g~I~iwdl~~~~~~~~~~--~~-~~~v~~sp~~~~lla~s~--- 657 (792)
......- .+++.. ++.+++.|+.+ ..+.+||+.+.+....-. .. ....+...++..++.|+.
T Consensus 83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTT
T ss_pred CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCC
Confidence 2111111 122222 34566677632 468999998876543321 11 111222234444555554
Q ss_pred ---CCeEEEEECCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeecCCCceE
Q 003840 658 ---ENVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFH 727 (792)
Q Consensus 658 ---dg~I~i~D~~t~~~~~~l~~h-~~~V~sv~~spdg~~Las~s~d------~I~IwDl~s~~~~~~i~~~~~~~~~i~ 727 (792)
-..+.+||..+.+-...-... ...-.+++. -++++++.|+.+ .+.+||+.+. ....+..+.......
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~- 237 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDN-KWAPFEAFPQERSSL- 237 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTT-EEEEECCCSSCCBSC-
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCC-eEEECCCCCCcccce-
Confidence 247899999887533221111 111112222 256666666543 4788898764 222222222111112
Q ss_pred EEEEeCCCCEEEEEEcC--------------CeEEEEECCCCcEEEE
Q 003840 728 SCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTL 760 (792)
Q Consensus 728 si~fspdg~~L~sgs~d--------------g~I~IwDl~~~~~~~~ 760 (792)
+++. -+++.+++|+.+ ..|.+||+.+.+...+
T Consensus 238 ~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 238 SLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred eEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 2222 256667777653 2478899988876544
No 329
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.27 E-value=0.12 Score=57.78 Aligned_cols=105 Identities=10% Similarity=0.152 Sum_probs=62.1
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-eeEEecc------cCCCeEEEEEcCC---CCeEEEEEeC----
Q 003840 553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMG------HSASVMSLDFHPN---KDDLICSCDG---- 618 (792)
Q Consensus 553 h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~-~i~~~~~------h~~~V~sl~fspd---~~~ll~sgs~---- 618 (792)
.-...+.|+|.|+|+++++-...+.|++++..++.. .+..+.. ....+..|+|+|+ +..++++-+.
T Consensus 25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 345678999999998777665555788887654222 1222221 2456779999996 5555555432
Q ss_pred --------CCcEEEEEcCCC--ee---EEE---ee----CCeeEEEEecCCCEEEEEEc
Q 003840 619 --------DGEIRYWSINNG--SC---TRV---FK----GGTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 619 --------Dg~I~iwdl~~~--~~---~~~---~~----~~~~~v~~sp~~~~lla~s~ 657 (792)
...|..|++... .. ... +. .....+.|.+++..+++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665432 11 111 21 12466999999876666553
No 330
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.27 E-value=0.012 Score=64.30 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=88.5
Q ss_pred CCeEEEEECCCCeEEEEecCC----CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCc---------ceEEEeec---
Q 003840 658 ENVVSILDAETQACRLSLQGH----TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG---------ECVHELSC--- 721 (792)
Q Consensus 658 dg~I~i~D~~t~~~~~~l~~h----~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~---------~~i~~~~~--- 721 (792)
++.|+..++......+.+... -..|..+..+|+|++||..+...|.|..+..+... ...+.+..
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 466666665533222222211 23578899999999999999889999888733210 11223322
Q ss_pred ---CCCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCCc--EE---------EEcccCCCeEEEEEeCCCCEEEEEe-
Q 003840 722 ---NGNKFHSCVFHPT---YPSLLVIGCYQSLELWNMSENK--TM---------TLTAHEGLIAALAVSTETGYVASAS- 783 (792)
Q Consensus 722 ---~~~~i~si~fspd---g~~L~sgs~dg~I~IwDl~~~~--~~---------~~~~h~~~V~sl~fspdg~~LaSgs- 783 (792)
....|..+.|||- +..|++...|+.|++||+.... +. ........|.+++|..++-.|...+
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~ 199 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNT 199 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEEC
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEec
Confidence 2467999999995 5689999999999999998622 11 1122336789999999887666655
Q ss_pred -CCCcEE
Q 003840 784 -HDKFVK 789 (792)
Q Consensus 784 -~DG~I~ 789 (792)
++|.|+
T Consensus 200 t~~GDIY 206 (452)
T 3pbp_A 200 TEGGDIF 206 (452)
T ss_dssp TTSCEEE
T ss_pred CCCCCEE
Confidence 778876
No 331
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.25 E-value=6.2e-05 Score=89.83 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=2.3
Q ss_pred cccCCCeEEEEEeC
Q 003840 761 TAHEGLIAALAVST 774 (792)
Q Consensus 761 ~~h~~~V~sl~fsp 774 (792)
..|-.-+..+.|.+
T Consensus 706 SDH~pV~a~f~l~~ 719 (727)
T 4b8c_D 706 SDHIPLLARFEFMK 719 (727)
T ss_dssp SSBCC---------
T ss_pred CCceeEEEEEEEec
Confidence 34555555555544
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.17 E-value=0.051 Score=57.13 Aligned_cols=224 Identities=10% Similarity=0.028 Sum_probs=110.7
Q ss_pred EEEEEeCCCeEEEEECCCCceeE-EeccCCCCEEEEEECCCCCeEEEEeC----CC-------cEEEEeCCCCCceeEEe
Q 003840 526 LLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSF----DK-------TVRVWDADNPGYSLRTF 593 (792)
Q Consensus 526 ~Lasgs~Dg~I~vWdl~t~~~~~-~l~~h~~~V~~i~fspdg~~Lasgs~----Dg-------~V~IWdl~s~~~~i~~~ 593 (792)
+++.|+. .+.+||..+.+-.. .+..........+...++.+++.|+. ++ .+.+||..+.. ...+
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE--WVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE--EEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc--EEEC
Confidence 3444443 47889988776443 12211122233334557778888873 12 16778877532 2222
Q ss_pred cc---cCCCeEEEEEcCCCCeEEEEEeCC-------CcEEEEEcCCCeeEEEee--CCe-eEEEEecCCCEEEEEEc---
Q 003840 594 MG---HSASVMSLDFHPNKDDLICSCDGD-------GEIRYWSINNGSCTRVFK--GGT-AQMRFQPHLGRYLAAAA--- 657 (792)
Q Consensus 594 ~~---h~~~V~sl~fspd~~~ll~sgs~D-------g~I~iwdl~~~~~~~~~~--~~~-~~v~~sp~~~~lla~s~--- 657 (792)
.. .......+.+ ++.+++.|+.+ ..+.+||+.+.+....-. ... .......++..++.|+.
T Consensus 94 ~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 170 (318)
T 2woz_A 94 PPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDD 170 (318)
T ss_dssp SCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESS
T ss_pred CCCCccccccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCC
Confidence 21 1111222222 34566677654 358889998876554321 111 11122234444455543
Q ss_pred ---CCeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeecCCCceE
Q 003840 658 ---ENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFH 727 (792)
Q Consensus 658 ---dg~I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d------~I~IwDl~s~~~~~~i~~~~~~~~~i~ 727 (792)
...+.+||..+.+-...-.. ....-.+++. -++++++.|+.+ .+.+||+.+.. ...+..+.......
T Consensus 171 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~- 247 (318)
T 2woz_A 171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQERSSI- 247 (318)
T ss_dssp SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSCCBSC-
T ss_pred CCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe-EEECCCCCCcccce-
Confidence 24699999988754332111 1111122222 256666666532 57789987642 22222222211111
Q ss_pred EEEEeCCCCEEEEEEcC--------------CeEEEEECCCCcEEEE
Q 003840 728 SCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTL 760 (792)
Q Consensus 728 si~fspdg~~L~sgs~d--------------g~I~IwDl~~~~~~~~ 760 (792)
+++ .-++..++.|+.+ ..|.+||+.+.+...+
T Consensus 248 ~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 248 SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 222 2355666666643 3688999988776544
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.12 E-value=0.014 Score=62.46 Aligned_cols=228 Identities=10% Similarity=-0.015 Sum_probs=112.6
Q ss_pred CCCEEEEEeC-CCeEEEEECCC--C--ceeEEec-cCCCCEEEEEECCCCCeEEEEeC-C---------CcEEEEeCCCC
Q 003840 523 DGKLLATGGH-DKKAVLWHTDT--L--KSKTNLE-EHSSLITDVRFSPSMPRLATSSF-D---------KTVRVWDADNP 586 (792)
Q Consensus 523 dg~~Lasgs~-Dg~I~vWdl~t--~--~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~-D---------g~V~IWdl~s~ 586 (792)
++++++.|+. ...+.+||+.+ . ..+..+. .......++.+ ++++++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5666666664 35688999864 2 2222222 11222223333 5667777776 2 46889998863
Q ss_pred CceeEEecc---cCCCeEEEEEcCCCCeEEEEEeCC---------------------------------------CcEEE
Q 003840 587 GYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGD---------------------------------------GEIRY 624 (792)
Q Consensus 587 ~~~i~~~~~---h~~~V~sl~fspd~~~ll~sgs~D---------------------------------------g~I~i 624 (792)
. ...+.. ....-.+++. . ++.+++.|+.+ ..+.+
T Consensus 97 ~--W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (357)
T 2uvk_A 97 S--WVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172 (357)
T ss_dssp E--EEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred c--EEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence 2 222211 1111122222 2 34677777754 57899
Q ss_pred EEcCCCeeEEEeeCC---ee-EEEEecCCCEEEEEEc------CCeEEEEEC--CCCeEEE--EecCCCCCeEEEEEcCC
Q 003840 625 WSINNGSCTRVFKGG---TA-QMRFQPHLGRYLAAAA------ENVVSILDA--ETQACRL--SLQGHTKPIDSVCWDPS 690 (792)
Q Consensus 625 wdl~~~~~~~~~~~~---~~-~v~~sp~~~~lla~s~------dg~I~i~D~--~t~~~~~--~l~~h~~~V~sv~~spd 690 (792)
||+.+.+....-..+ .. ..+...++..++.|+. ...+.+||+ ++.+-.. .+........+.+...+
T Consensus 173 yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~ 252 (357)
T 2uvk_A 173 FDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISN 252 (357)
T ss_dssp EETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEET
T ss_pred EeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEEC
Confidence 999887755442211 11 1222223344444442 346777887 4433221 11111111121122235
Q ss_pred CCEEEEEeC-----------------------CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC--
Q 003840 691 GELLASVSE-----------------------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-- 745 (792)
Q Consensus 691 g~~Las~s~-----------------------d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg-- 745 (792)
+++++.|+. ..+.+||+.+. ....+..+....... .++.-+++.++.|+.++
T Consensus 253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~--~~~~~~~~i~v~GG~~~~~ 329 (357)
T 2uvk_A 253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG-KWDKSGELSQGRAYG--VSLPWNNSLLIIGGETAGG 329 (357)
T ss_dssp TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSS--EEEEETTEEEEEEEECGGG
T ss_pred CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC-ceeeCCCCCCCcccc--eeEEeCCEEEEEeeeCCCC
Confidence 666666652 14778998764 334444443332222 22334677888888653
Q ss_pred ----eEEEEECCCCcEEE
Q 003840 746 ----SLELWNMSENKTMT 759 (792)
Q Consensus 746 ----~I~IwDl~~~~~~~ 759 (792)
.|.++++++++.+.
T Consensus 330 ~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 330 KAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp CEEEEEEEEEC-CCSCEE
T ss_pred CEeeeEEEEEEcCcEeEe
Confidence 57777998888774
No 334
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.10 E-value=0.045 Score=57.53 Aligned_cols=210 Identities=9% Similarity=-0.029 Sum_probs=103.6
Q ss_pred eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeC----C-------CcEEEEEcCCCeeEEEe
Q 003840 568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG----D-------GEIRYWSINNGSCTRVF 636 (792)
Q Consensus 568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~----D-------g~I~iwdl~~~~~~~~~ 636 (792)
+++.|+ ..+.+||..+.......+..........+...+ +.+++.|+. + ..+.+||..+.+....-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 445555 569999998754433222222122222222333 446666663 1 12788999887654321
Q ss_pred e--CCeeE-EEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEEeC-----
Q 003840 637 K--GGTAQ-MRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSE----- 699 (792)
Q Consensus 637 ~--~~~~~-v~~sp~~~~lla~s~d--------g~I~i~D~~t~~~~~~l~~h-~~~V~sv~~spdg~~Las~s~----- 699 (792)
. ..... .....++..++.|+.+ ..+.+||..+.+-...-... ...-.+++. -++++++.|+.
T Consensus 84 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 84 PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRK 162 (315)
T ss_dssp CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSC
T ss_pred CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCc
Confidence 1 11111 1112233444444421 46899999887533211111 111122222 35666666664
Q ss_pred --CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEEcccC--CCeEEE
Q 003840 700 --DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTLTAHE--GLIAAL 770 (792)
Q Consensus 700 --d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~~~~h~--~~V~sl 770 (792)
+.+.+||+.+.. ...+..+....... +++ .-+++.+++|+.++ .+.+||+.+.+...+..-. ..-.++
T Consensus 163 ~~~~~~~yd~~~~~-W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 239 (315)
T 4asc_A 163 CLNKMCVYDPKKFE-WKELAPMQTARSLF-GAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL 239 (315)
T ss_dssp BCCCEEEEETTTTE-EEECCCCSSCCBSC-EEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred ccceEEEEeCCCCe-EEECCCCCCchhce-EEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence 258899987641 12222221111112 222 22667777777654 6899999988766544211 111122
Q ss_pred EEeCCCCEEEEEeCC
Q 003840 771 AVSTETGYVASASHD 785 (792)
Q Consensus 771 ~fspdg~~LaSgs~D 785 (792)
+. -++++++.|+.+
T Consensus 240 ~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 240 VS-LVGTLYAIGGFA 253 (315)
T ss_dssp EE-ETTEEEEEEEEE
T ss_pred EE-ECCEEEEECCcc
Confidence 22 266777777764
No 335
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.06 E-value=0.41 Score=53.31 Aligned_cols=105 Identities=14% Similarity=0.143 Sum_probs=63.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE--Eecc------CCCCEEEEEECCC---CCeEEEEeC------
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEE------HSSLITDVRFSPS---MPRLATSSF------ 574 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~--~l~~------h~~~V~~i~fspd---g~~Lasgs~------ 574 (792)
-...++|+|.|||+++++-...+.|++++..++.... .+.. ....+..|+|+|+ +.+|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4467899999999977766544579888866554322 2221 2456789999995 555555432
Q ss_pred -------CCcEEEEeCCCCC------cee-EEec-ccCCCeEEEEEcCCCCeEEEEE
Q 003840 575 -------DKTVRVWDADNPG------YSL-RTFM-GHSASVMSLDFHPNKDDLICSC 616 (792)
Q Consensus 575 -------Dg~V~IWdl~s~~------~~i-~~~~-~h~~~V~sl~fspd~~~ll~sg 616 (792)
...|..|+++... +.+ ..+. ........|+|.|++..++.+|
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2346666654321 111 1121 1123478999999987555444
No 336
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.06 E-value=8.4e-05 Score=88.73 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=3.5
Q ss_pred CCeEEEEECC
Q 003840 533 DKKAVLWHTD 542 (792)
Q Consensus 533 Dg~I~vWdl~ 542 (792)
+|...+|...
T Consensus 487 ~G~AI~y~~s 496 (727)
T 4b8c_D 487 DGCCIFFKRD 496 (727)
T ss_dssp CCCEEEC---
T ss_pred ccEEEEEEcc
Confidence 4455555443
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.019 Score=61.38 Aligned_cols=190 Identities=9% Similarity=0.050 Sum_probs=104.1
Q ss_pred CeEEEEeCCCcEEEEeCCCCCceeEEeccc-CCCeEEEEE--cCCCCeEEEEE-eCCCcEEEEEcCCCeeEEEeeCC---
Q 003840 567 PRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDF--HPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGG--- 639 (792)
Q Consensus 567 ~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h-~~~V~sl~f--spd~~~ll~sg-s~Dg~I~iwdl~~~~~~~~~~~~--- 639 (792)
.++++++.||.|+-+|..+ ++....+... ..++....- .+.+..+++.. ..||.|+.+|..+|.....+..+
T Consensus 11 ~~V~v~t~dG~l~Ald~~t-G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRN-GHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTT-TEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCC-CcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 3788999999999999987 6666655543 122222110 01122344343 58999999999888655444321
Q ss_pred -eeEEEEe-----------cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCC-------CeEEEEEc-----CCCCEEE
Q 003840 640 -TAQMRFQ-----------PHLGRYLAAAAENVVSILDAETQACRLSLQGHTK-------PIDSVCWD-----PSGELLA 695 (792)
Q Consensus 640 -~~~v~~s-----------p~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~-------~V~sv~~s-----pdg~~La 695 (792)
...+... ..++.+++++.++.+...|+++|+.+..+..... ...|.... ..+..|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1112221 1567889999999999999999999998874321 01122111 1234566
Q ss_pred EEeCC-eEEEEECCCCCCcce-EEEeecCCCc--e-EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE
Q 003840 696 SVSED-SVRVWTVGSGSEGEC-VHELSCNGNK--F-HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT 759 (792)
Q Consensus 696 s~s~d-~I~IwDl~s~~~~~~-i~~~~~~~~~--i-~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~ 759 (792)
.+..+ .+.+.+ +++..... +......... + ....++.|+.+ ++++.||.|+.+|..++..+.
T Consensus 170 ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 66665 666666 34421111 1111110000 0 00001123554 557788888888888777654
No 338
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.90 E-value=0.12 Score=58.18 Aligned_cols=256 Identities=10% Similarity=0.081 Sum_probs=141.4
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEeccC-------------------------CCCE--EEEEECC---CCCeEEEEe-C
Q 003840 526 LLATGGHDKKAVLWHTDTLKSKTNLEEH-------------------------SSLI--TDVRFSP---SMPRLATSS-F 574 (792)
Q Consensus 526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h-------------------------~~~V--~~i~fsp---dg~~Lasgs-~ 574 (792)
.|.+|+..|.|+|+-+.+++.++.+... .+.. ..+++.. ||++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 4678889999999999888888776420 0011 1233322 566777665 4
Q ss_pred CCcEEEEeCCCCCceeEEe-cccCCCeEEEEEc--CCCCeEEEEEe------CCCcEE---------E---EEcCCCeeE
Q 003840 575 DKTVRVWDADNPGYSLRTF-MGHSASVMSLDFH--PNKDDLICSCD------GDGEIR---------Y---WSINNGSCT 633 (792)
Q Consensus 575 Dg~V~IWdl~s~~~~i~~~-~~h~~~V~sl~fs--pd~~~ll~sgs------~Dg~I~---------i---wdl~~~~~~ 633 (792)
+..|...+++. -++-..+ ......+.+++|- |+..++|+.+- .||... + .|..+.+..
T Consensus 152 n~RvAri~l~~-~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~ 230 (638)
T 3sbq_A 152 NSRVARIRLDI-MKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA 230 (638)
T ss_dssp TTEEEEEETTT-TEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred CcceEEEECCc-EeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence 56677788876 3332222 2345678888886 56555554331 133311 1 122222221
Q ss_pred EE--eeCCeeEEEEecCCCEEEEEEcCC---------------eEEEEEC-------------------------CC---
Q 003840 634 RV--FKGGTAQMRFQPHLGRYLAAAAEN---------------VVSILDA-------------------------ET--- 668 (792)
Q Consensus 634 ~~--~~~~~~~v~~sp~~~~lla~s~dg---------------~I~i~D~-------------------------~t--- 668 (792)
.. ..+....+...+++++.++.+.+. .|.++++ +.
T Consensus 231 ~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 231 FQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 11 122223344556666666665421 3444443 22
Q ss_pred -C-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC---------CCcceEEEeecCCCceEEEEEeCCC
Q 003840 669 -Q-ACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG---------SEGECVHELSCNGNKFHSCVFHPTY 735 (792)
Q Consensus 669 -~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~---------~~~~~i~~~~~~~~~i~si~fspdg 735 (792)
+ ..++.+. -......+.++|||+++++++.- ++.|+|++.. ....++..-..-+-.....+|.++|
T Consensus 311 ~~~~~~~~iP-~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G 389 (638)
T 3sbq_A 311 KDSKFTRYVP-VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG 389 (638)
T ss_dssp BCCSSEEEEE-ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred cCCceEEEEe-CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC
Confidence 1 1111111 11234567899999999988865 9999999742 1112222222245567888999999
Q ss_pred CEEEEEEcCCeEEEEECCCC----------cEE-EEcccCCCeEEEEE------eCCCCEEEEEeC
Q 003840 736 PSLLVIGCYQSLELWNMSEN----------KTM-TLTAHEGLIAALAV------STETGYVASASH 784 (792)
Q Consensus 736 ~~L~sgs~dg~I~IwDl~~~----------~~~-~~~~h~~~V~sl~f------spdg~~LaSgs~ 784 (792)
....+.--|..|..|++... .++ .+..|-.+ -.+.- .+||+||++.+.
T Consensus 390 ~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 390 NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEES
T ss_pred ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecc
Confidence 54455557889999998653 233 34444332 22322 578999988753
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.81 E-value=0.1 Score=54.85 Aligned_cols=208 Identities=10% Similarity=0.010 Sum_probs=101.4
Q ss_pred eEEEEeCCCcEEEEeCCCCCceeEEecccC-CCeEEEEEcCCCCeEEEEEeC----CC-------cEEEEEcCCCeeEEE
Q 003840 568 RLATSSFDKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDG----DG-------EIRYWSINNGSCTRV 635 (792)
Q Consensus 568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~-~~V~sl~fspd~~~ll~sgs~----Dg-------~I~iwdl~~~~~~~~ 635 (792)
+++.|+. .+.+||..+............ ..-.+++ ..+ +.+++.|+. ++ .+.+||..+.+....
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 4445543 388999987443332222111 1222333 233 456667773 12 277889887765443
Q ss_pred ee--CCe-eEEEEecCCCEEEEEEcC-------CeEEEEECCCCeEEEEecCCCCC--eEEEEEcCCCCEEEEEeC----
Q 003840 636 FK--GGT-AQMRFQPHLGRYLAAAAE-------NVVSILDAETQACRLSLQGHTKP--IDSVCWDPSGELLASVSE---- 699 (792)
Q Consensus 636 ~~--~~~-~~v~~sp~~~~lla~s~d-------g~I~i~D~~t~~~~~~l~~h~~~--V~sv~~spdg~~Las~s~---- 699 (792)
-. ... .......++..+++|+.+ ..+.+||..+.+-...-. ...+ -.+++. .++++++.|+.
T Consensus 94 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 94 PPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYGHNVIS-HNGMIYCLGGKTDDK 171 (318)
T ss_dssp SCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEESCEEEE-ETTEEEEECCEESSS
T ss_pred CCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccccEEEE-ECCEEEEEcCCCCCC
Confidence 11 111 111122244555566543 368889998775433211 1111 112222 35666666652
Q ss_pred ---CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEEcccCCC--eEE
Q 003840 700 ---DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHEGL--IAA 769 (792)
Q Consensus 700 ---d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~~~~h~~~--V~s 769 (792)
+.+.+||+.+.. ...+..+...... .+++. -+++.++.|+.+ ..+.+||+.+.+...+...... -.+
T Consensus 172 ~~~~~~~~yd~~~~~-W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 248 (318)
T 2woz_A 172 KCTNRVFIYNPKKGD-WKDLAPMKTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSIS 248 (318)
T ss_dssp CBCCCEEEEETTTTE-EEEECCCSSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCE
T ss_pred CccceEEEEcCCCCE-EEECCCCCCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceE
Confidence 158899987642 2222222211111 22222 256667777654 3688999998876644322111 112
Q ss_pred EEEeCCCCEEEEEeCC
Q 003840 770 LAVSTETGYVASASHD 785 (792)
Q Consensus 770 l~fspdg~~LaSgs~D 785 (792)
++ .-++++++.|+.+
T Consensus 249 ~~-~~~~~i~v~GG~~ 263 (318)
T 2woz_A 249 LV-SLAGSLYAIGGFA 263 (318)
T ss_dssp EE-EETTEEEEECCBC
T ss_pred EE-EECCEEEEECCee
Confidence 22 2356777777754
No 340
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.76 E-value=0.3 Score=53.01 Aligned_cols=254 Identities=8% Similarity=-0.033 Sum_probs=120.1
Q ss_pred CCCeEEEEEcC--CCCEEEEEeCCC----eEEEEECCCCceeEEecc--------------CCCCEEEEEECCC--CCeE
Q 003840 512 TSKVICCHFSS--DGKLLATGGHDK----KAVLWHTDTLKSKTNLEE--------------HSSLITDVRFSPS--MPRL 569 (792)
Q Consensus 512 ~~~V~~lafsp--dg~~Lasgs~Dg----~I~vWdl~t~~~~~~l~~--------------h~~~V~~i~fspd--g~~L 569 (792)
...|.+|+++| ++.++ +++..| .|... .+.++.-..+.. ....|.+|++.|. ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~-~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERML-MAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEE-EEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEE-EEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 34699999998 44444 444444 34333 233322222211 1135888999872 4566
Q ss_pred EEEeCCCcEEEEeCCCCCceeEEecc-------------------cCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCC
Q 003840 570 ATSSFDKTVRVWDADNPGYSLRTFMG-------------------HSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINN 629 (792)
Q Consensus 570 asgs~Dg~V~IWdl~s~~~~i~~~~~-------------------h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~ 629 (792)
+++...+.|... ...+.....+.. ....|.+|.+.|.. ..++ .+..++.|...+ ..
T Consensus 132 ~~g~~~ggl~~S--~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~-vg~~~ggl~~s~-Dg 207 (394)
T 3b7f_A 132 YAGTSPQGLFRS--TDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY-IGMSSGGVFEST-DA 207 (394)
T ss_dssp EEEEETTEEEEE--SSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE-EEEETBEEEEES-ST
T ss_pred EEEecCCcEEEE--cCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE-EEECCCCEEEEC-CC
Confidence 666666654444 333333333321 12357899998843 3444 343344444332 22
Q ss_pred CeeEEEee----------------CCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecC--CC---CCeEEEEE
Q 003840 630 GSCTRVFK----------------GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQG--HT---KPIDSVCW 687 (792)
Q Consensus 630 ~~~~~~~~----------------~~~~~v~~sp~~-~~lla~s~dg~I~i~D~~t~~~~~~l~~--h~---~~V~sv~~ 687 (792)
++.-..+. ..+..+.+.+.. +.++++... .|+..+-. ++.-..+.. .. ..+.++++
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~-gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~ 285 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC-GIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVV 285 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT-EEEEEETT-TTEEECGGGGSCTTTCSCEEEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC-eEEEeCCC-CCcceECCCCCCCCCccceEEEEE
Confidence 22211111 124567777763 566666544 45544432 222222221 11 34567888
Q ss_pred cCC-CCEEEEEeC-----------C-eEEEEECCC-CCCcceEEE-eecCCC----ceEEEEEeCCC-CEEEEEEcCCeE
Q 003840 688 DPS-GELLASVSE-----------D-SVRVWTVGS-GSEGECVHE-LSCNGN----KFHSCVFHPTY-PSLLVIGCYQSL 747 (792)
Q Consensus 688 spd-g~~Las~s~-----------d-~I~IwDl~s-~~~~~~i~~-~~~~~~----~i~si~fspdg-~~L~sgs~dg~I 747 (792)
+|. ...|+++.. + ...||.... +.....+.. +..... ....++++|.. ..|++++.++.|
T Consensus 286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 763 333333321 2 345555444 233333221 111110 11357787743 457777666666
Q ss_pred EEEECCCCcEEEEcccCCCeEEEEEe
Q 003840 748 ELWNMSENKTMTLTAHEGLIAALAVS 773 (792)
Q Consensus 748 ~IwDl~~~~~~~~~~h~~~V~sl~fs 773 (792)
+.-+-.......+..+-..|.+|.|.
T Consensus 366 ~~S~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 366 WASADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EEESSTTSBCEEEECSCSCEEEEEEE
T ss_pred EEECCCCCCceEcccCCCCeeEEEEe
Confidence 54433222223444444567777764
No 341
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.69 E-value=0.047 Score=57.20 Aligned_cols=181 Identities=15% Similarity=0.100 Sum_probs=92.4
Q ss_pred CCCEEEEEeC----C-----CeEEEEECCCCceeEE--eccCCCCEEEEEECCCCCeEEEEeCC-----CcEEEEeCCCC
Q 003840 523 DGKLLATGGH----D-----KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNP 586 (792)
Q Consensus 523 dg~~Lasgs~----D-----g~I~vWdl~t~~~~~~--l~~h~~~V~~i~fspdg~~Lasgs~D-----g~V~IWdl~s~ 586 (792)
++++++.|+. + ..+.+||..+.+-... +.........+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5667777765 2 4688899877643222 2222222223333 56677777654 35888998763
Q ss_pred CceeE-EecccCCCeEEEEEcCCCCeEEEEEeCC-----CcEEEEEcCCCeeEEEee--CC--eeEEEEecCCCEEEEEE
Q 003840 587 GYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFK--GG--TAQMRFQPHLGRYLAAA 656 (792)
Q Consensus 587 ~~~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~--~~--~~~v~~sp~~~~lla~s 656 (792)
..... .+........++.+ ++.+++.|+.+ ..+.+||+.+.+....-. .. ...+.. -++..++.++
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 223 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGG 223 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred eEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE-ECCEEEEEeC
Confidence 21111 11111112222223 34566677654 468999998876543321 11 111222 2444455555
Q ss_pred cC-----CeEEEEECCCCeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC------eEEEEECCCC
Q 003840 657 AE-----NVVSILDAETQACRLSLQGHT-KPIDSVCWDPSGELLASVSED------SVRVWTVGSG 710 (792)
Q Consensus 657 ~d-----g~I~i~D~~t~~~~~~l~~h~-~~V~sv~~spdg~~Las~s~d------~I~IwDl~s~ 710 (792)
.+ ..+.+||+++.+-...-.... ..-.+++. -++++++.|+.+ .|.+||+.+.
T Consensus 224 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 224 YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp BCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 43 579999998875433211111 11112222 256666666532 5778888653
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.68 E-value=0.025 Score=60.54 Aligned_cols=217 Identities=9% Similarity=-0.002 Sum_probs=101.9
Q ss_pred CCCeEEEEeCC-CcEEEEeCCCCCceeEEecc----cCCCeEEEEEcCCCCeEEEEEeC-C---------CcEEEEEcCC
Q 003840 565 SMPRLATSSFD-KTVRVWDADNPGYSLRTFMG----HSASVMSLDFHPNKDDLICSCDG-D---------GEIRYWSINN 629 (792)
Q Consensus 565 dg~~Lasgs~D-g~V~IWdl~s~~~~i~~~~~----h~~~V~sl~fspd~~~ll~sgs~-D---------g~I~iwdl~~ 629 (792)
++.+++.|+.+ ..+.+||+.........+.. ......++.+ ++.+++.|+. + ..+.+||+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 45555666543 45888888631222222221 1111222222 2456666665 2 4689999988
Q ss_pred CeeEEEee---CC-eeEEEEecCCCEEEEEEcC---------------------------------------CeEEEEEC
Q 003840 630 GSCTRVFK---GG-TAQMRFQPHLGRYLAAAAE---------------------------------------NVVSILDA 666 (792)
Q Consensus 630 ~~~~~~~~---~~-~~~v~~sp~~~~lla~s~d---------------------------------------g~I~i~D~ 666 (792)
.+....-. .. ....++..++..++.|+.+ ..+.+||.
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred CcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 76554321 11 1122233454555556543 57999999
Q ss_pred CCCeEEE--EecCCCCCeEEEEEcCCCCEEEEEeC-------CeEEEEEC--CCCCCcceEEEeecCCCceEEEEEeCCC
Q 003840 667 ETQACRL--SLQGHTKPIDSVCWDPSGELLASVSE-------DSVRVWTV--GSGSEGECVHELSCNGNKFHSCVFHPTY 735 (792)
Q Consensus 667 ~t~~~~~--~l~~h~~~V~sv~~spdg~~Las~s~-------d~I~IwDl--~s~~~~~~i~~~~~~~~~i~si~fspdg 735 (792)
.+.+-.. .+......-.+++.. ++++++.|+. +.+.+||+ .+. ....+..+..........+...++
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~-~W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNL-KWNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---C-EEEECCCSSTTTCCBSCEEEEETT
T ss_pred CCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCC-cEEecCCCCCCcccccceEEEECC
Confidence 8864333 222111111233332 5566666542 25777877 322 122222221111112222333456
Q ss_pred CEEEEEEcC----------------------CeEEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEeCCC
Q 003840 736 PSLLVIGCY----------------------QSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDK 786 (792)
Q Consensus 736 ~~L~sgs~d----------------------g~I~IwDl~~~~~~~~~~h~-~~V~sl~fspdg~~LaSgs~DG 786 (792)
+.+++|+.+ ..+.+||+.+.+...+.... ......++..++++++.||.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETA 327 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECG
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCC
Confidence 666666632 25789999887655332111 1111122334678888888653
No 343
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.62 E-value=0.097 Score=65.12 Aligned_cols=217 Identities=10% Similarity=0.180 Sum_probs=125.3
Q ss_pred CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCe
Q 003840 532 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 611 (792)
Q Consensus 532 ~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ 611 (792)
....|.|.|+.++..+.+-.- .--+...+|..+.||.-. ..++.|||+++ +..++.+.- ...|.-=.|.....
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnl~~-k~klks~~~-~e~VvfWkWis~~~- 118 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHTM-TDDVTFWKWISLNT- 118 (1630)
T ss_pred CCceEEEEECCCCCCcccccc---cchhhccCCCcceEEEec-CCeEEEeehHH-hhhhccccc-CCCceEEEecCCCe-
Confidence 344789999987654422111 111234567776666554 77899999997 444555443 33455556654432
Q ss_pred EEEEEeCCCcEEEEEcCCC-eeEEEee-------CCeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEec
Q 003840 612 LICSCDGDGEIRYWSINNG-SCTRVFK-------GGTAQMRFQPHLGRYLAAAA-------ENVVSILDAETQACRLSLQ 676 (792)
Q Consensus 612 ll~sgs~Dg~I~iwdl~~~-~~~~~~~-------~~~~~v~~sp~~~~lla~s~-------dg~I~i~D~~t~~~~~~l~ 676 (792)
+.+++ +..|+.|++... ..++.|. ..+...+.+++.++++..+- .|.+.+|..+.+. -..+.
T Consensus 119 l~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ie 195 (1630)
T 1xi4_A 119 VALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE 195 (1630)
T ss_pred eEEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhh
Confidence 32222 678999999642 2333332 23444566777787766553 4788888876542 22344
Q ss_pred CCCCCeEEEEEcC---CCCEEEEEeC----CeEEEEECCCC---CC--c-ceEEEeec---CCCceEEEEEeCCCCEEEE
Q 003840 677 GHTKPIDSVCWDP---SGELLASVSE----DSVRVWTVGSG---SE--G-ECVHELSC---NGNKFHSCVFHPTYPSLLV 740 (792)
Q Consensus 677 ~h~~~V~sv~~sp---dg~~Las~s~----d~I~IwDl~s~---~~--~-~~i~~~~~---~~~~i~si~fspdg~~L~s 740 (792)
||......+.... ...+++.+.. ..+.|.++... .. . +.+..+.. ...-..++..++....++.
T Consensus 196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~ 275 (1630)
T 1xi4_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (1630)
T ss_pred HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence 5544433333221 1223333332 37888888543 10 0 11111111 1233456778888899999
Q ss_pred EEcCCeEEEEECCCCcEE
Q 003840 741 IGCYQSLELWNMSENKTM 758 (792)
Q Consensus 741 gs~dg~I~IwDl~~~~~~ 758 (792)
.+..|.|++||+.++.++
T Consensus 276 itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred EecCceEEEEecccchhh
Confidence 999999999999999877
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.58 E-value=0.091 Score=62.08 Aligned_cols=221 Identities=5% Similarity=-0.023 Sum_probs=114.1
Q ss_pred CCCCeEEEEeCC----CcEEEEeCCCCCceeEEec------ccCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEc
Q 003840 564 PSMPRLATSSFD----KTVRVWDADNPGYSLRTFM------GHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSI 627 (792)
Q Consensus 564 pdg~~Lasgs~D----g~V~IWdl~s~~~~i~~~~------~h~~~V~sl~fspd~~~ll~sgs~D------g~I~iwdl 627 (792)
.++.+++.|+.+ ..+.+||..+.......+. .....-.+++....++.+++.|+.+ ..+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777754 4588899887433322201 1111112333333124566677654 35889999
Q ss_pred CCCeeEEEee--CC--eeEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEec-----CCCCCeEEEEEcCC-CCEEE
Q 003840 628 NNGSCTRVFK--GG--TAQMRFQPHLGRYLAAAAEN--VVSILDAETQACRLSLQ-----GHTKPIDSVCWDPS-GELLA 695 (792)
Q Consensus 628 ~~~~~~~~~~--~~--~~~v~~sp~~~~lla~s~dg--~I~i~D~~t~~~~~~l~-----~h~~~V~sv~~spd-g~~La 695 (792)
.+.+....-. .+ ...++...++..++.|+.++ .+.+||..+..-...-. .......++.+..+ +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 8876554321 11 11223323666666666543 79999998875433211 11122233555555 66666
Q ss_pred EEeC--------CeEEEEECCCCCC-----cceEEEeecCCCceEEEEEeCCCCEEEEEEcC--------CeEEEEECCC
Q 003840 696 SVSE--------DSVRVWTVGSGSE-----GECVHELSCNGNKFHSCVFHPTYPSLLVIGCY--------QSLELWNMSE 754 (792)
Q Consensus 696 s~s~--------d~I~IwDl~s~~~-----~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d--------g~I~IwDl~~ 754 (792)
.|+. +.+.+||+.+... ...+.........-.+++...++..+++|+.+ ..|.+||+.+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 6654 2588999987642 22232211111122233344446677777743 4699999998
Q ss_pred CcEEEEcccC--------CCe-EEEEEeCCCCEEEEEeC
Q 003840 755 NKTMTLTAHE--------GLI-AALAVSTETGYVASASH 784 (792)
Q Consensus 755 ~~~~~~~~h~--------~~V-~sl~fspdg~~LaSgs~ 784 (792)
.+........ ..+ .+++...++++++.||.
T Consensus 636 ~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 636 ETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp TEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred CeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 8765322100 000 23333455677777764
No 345
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.55 E-value=1.2 Score=48.22 Aligned_cols=258 Identities=9% Similarity=-0.023 Sum_probs=121.3
Q ss_pred CEEEEEeCCCeEEEEECCC-CceeEEe--ccCCCCEEEEEECC-CCCeEEEEeCCC--cEEEEeCCCCCceeEEecc---
Q 003840 525 KLLATGGHDKKAVLWHTDT-LKSKTNL--EEHSSLITDVRFSP-SMPRLATSSFDK--TVRVWDADNPGYSLRTFMG--- 595 (792)
Q Consensus 525 ~~Lasgs~Dg~I~vWdl~t-~~~~~~l--~~h~~~V~~i~fsp-dg~~Lasgs~Dg--~V~IWdl~s~~~~i~~~~~--- 595 (792)
..|++|+..| +.+++... +..-..+ ......|.+|++.| +...|++++..| ...||.....+.....+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPA 101 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCcccc
Confidence 3677777776 55555432 2222221 12345799999998 334455555444 1123333332333232221
Q ss_pred -----------cCCCeEEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeEEEee----------------------CCe
Q 003840 596 -----------HSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFK----------------------GGT 640 (792)
Q Consensus 596 -----------h~~~V~sl~fspd--~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----------------------~~~ 640 (792)
....|.+|++.|. ...++ ++...+.|...+-. ++.-..+. ..+
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~-~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWY-AGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEE-EEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEE-EEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCce
Confidence 1125778999873 34444 55445555544322 22111111 123
Q ss_pred eEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEecC-----C--------CCCeEEEEEcCC-CCEEEEEeCCeEEEE
Q 003840 641 AQMRFQPH-LGRYLAAAAENVVSILDAETQACRLSLQG-----H--------TKPIDSVCWDPS-GELLASVSEDSVRVW 705 (792)
Q Consensus 641 ~~v~~sp~-~~~lla~s~dg~I~i~D~~t~~~~~~l~~-----h--------~~~V~sv~~spd-g~~Las~s~d~I~Iw 705 (792)
..+.+.|. .+.++++..++.|...+-. ++.-..+.. + ...+.+|+++++ ...|+.+..+.|...
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s 258 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRM 258 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEe
Confidence 46777774 4567777666655544322 221111110 0 124889999985 356666666665554
Q ss_pred ECCCCCCcceEEEeec--CC---CceEEEEEeCC-CCEEEEEEc-----------CCeEEEEECCC-CcEE-EEc-ccCC
Q 003840 706 TVGSGSEGECVHELSC--NG---NKFHSCVFHPT-YPSLLVIGC-----------YQSLELWNMSE-NKTM-TLT-AHEG 765 (792)
Q Consensus 706 Dl~s~~~~~~i~~~~~--~~---~~i~si~fspd-g~~L~sgs~-----------dg~I~IwDl~~-~~~~-~~~-~h~~ 765 (792)
+-. +. ....+.. .. ..+..++++|. ...|+++.. ++...||...+ ++.. .+. +-..
T Consensus 259 ~D~-G~---tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~ 334 (394)
T 3b7f_A 259 DRR-EG---VWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPT 334 (394)
T ss_dssp ETT-TT---EEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCC
T ss_pred CCC-CC---cceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCC
Confidence 421 21 1111111 11 23567788763 344555542 23345554443 3322 221 1110
Q ss_pred -------CeEEEEEeCC-CCEEEEEeCCCcEEE
Q 003840 766 -------LIAALAVSTE-TGYVASASHDKFVKL 790 (792)
Q Consensus 766 -------~V~sl~fspd-g~~LaSgs~DG~I~I 790 (792)
...+++++|. ...|+.++.++.|.+
T Consensus 335 ~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 335 DQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp SSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred ccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 1235788774 344666666666653
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.061 Score=57.48 Aligned_cols=142 Identities=8% Similarity=-0.010 Sum_probs=84.0
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEeccC-CCCEEEEEEC--C-CCCeEEEE-eCCCcEEEEeCCCCCceeEEecc----c
Q 003840 526 LLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFS--P-SMPRLATS-SFDKTVRVWDADNPGYSLRTFMG----H 596 (792)
Q Consensus 526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h-~~~V~~i~fs--p-dg~~Lasg-s~Dg~V~IWdl~s~~~~i~~~~~----h 596 (792)
++++++.||.|+-+|.++|+.+-+++.. ..++....-. + ++..++.. +.||.|..++..++ .....+.. .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G-~~~~~~~~~~lv~ 90 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG-LQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE-EEEEEEEHHHHHT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC-cEEeeecccccee
Confidence 7889999999999999999999888754 1222221100 1 22334343 68999999998763 22222221 1
Q ss_pred CCCeEE---EEE-cC---CCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCee----------EEEEe-----cCCCEEEE
Q 003840 597 SASVMS---LDF-HP---NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA----------QMRFQ-----PHLGRYLA 654 (792)
Q Consensus 597 ~~~V~s---l~f-sp---d~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~----------~v~~s-----p~~~~lla 654 (792)
..++.. ..+ .+ .....+++|+.+|.+...|+++|+.+..+..... |.+.. ..++.++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 122221 000 00 0234677999999999999999999998864321 11111 12356777
Q ss_pred EEcCCeEEEEECCCC
Q 003840 655 AAAENVVSILDAETQ 669 (792)
Q Consensus 655 ~s~dg~I~i~D~~t~ 669 (792)
+..+..|.+.+ +++
T Consensus 171 g~~~y~v~~~~-~sG 184 (339)
T 2be1_A 171 GKTIFELGIHS-YDG 184 (339)
T ss_dssp EEEEEECEECC-TTS
T ss_pred ecceEEEEEEC-CCC
Confidence 77777777766 444
No 347
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.35 E-value=0.19 Score=54.84 Aligned_cols=143 Identities=15% Similarity=0.058 Sum_probs=95.2
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC----CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC--------
Q 003840 520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH----SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-------- 587 (792)
Q Consensus 520 fspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h----~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~-------- 587 (792)
...+|..|+++- ++.||.-++......+.++.. -..|..+..+|+|++||..+.. .|.|-.+..+.
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCccccc
Confidence 345666666664 578888788755555555433 2368889999999999988655 58888887321
Q ss_pred ---ceeEEecc------cCCCeEEEEEcCCCCe--EEEEEeCCCcEEEEEcCCCe--eE------EEee-----CCeeEE
Q 003840 588 ---YSLRTFMG------HSASVMSLDFHPNKDD--LICSCDGDGEIRYWSINNGS--CT------RVFK-----GGTAQM 643 (792)
Q Consensus 588 ---~~i~~~~~------h~~~V~sl~fspd~~~--ll~sgs~Dg~I~iwdl~~~~--~~------~~~~-----~~~~~v 643 (792)
...+.+.- ....|..+.|||-+.. .|++-..|+.|++||+.... .. ..|. ..+.++
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEE
Confidence 11223332 2567999999997643 56678889999999998622 11 1122 345678
Q ss_pred EEecCCCEEEEEE--cCCeEEEE
Q 003840 644 RFQPHLGRYLAAA--AENVVSIL 664 (792)
Q Consensus 644 ~~sp~~~~lla~s--~dg~I~i~ 664 (792)
+|..++=.|++.. .+|.|+-+
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEE
T ss_pred EEcCCCcEEEEEecCCCCCEEEE
Confidence 8888766677755 66777665
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=96.25 E-value=2 Score=47.79 Aligned_cols=105 Identities=11% Similarity=0.043 Sum_probs=60.3
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc---eeEEec---------cCCCCEEEEEECCC----CCeEEEEeC-
Q 003840 513 SKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLK---SKTNLE---------EHSSLITDVRFSPS----MPRLATSSF- 574 (792)
Q Consensus 513 ~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~---~~~~l~---------~h~~~V~~i~fspd----g~~Lasgs~- 574 (792)
...+.|+|.|||. .|+++...|.|++++.+... .+..+. ........|+|+|+ +.++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4578999999996 55566788999999754321 222221 11457889999996 333333222
Q ss_pred -C----------CcEEEEeCCCC---------CceeEEec--ccCCCeEEEEEcCCCCeEEEEEe
Q 003840 575 -D----------KTVRVWDADNP---------GYSLRTFM--GHSASVMSLDFHPNKDDLICSCD 617 (792)
Q Consensus 575 -D----------g~V~IWdl~s~---------~~~i~~~~--~h~~~V~sl~fspd~~~ll~sgs 617 (792)
+ ..|.-|.+... .+.+..+. ........|+|.||+..+|.+|+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 13445666421 11222222 12234678999999865554443
No 349
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=96.25 E-value=0.21 Score=58.93 Aligned_cols=239 Identities=8% Similarity=0.022 Sum_probs=123.2
Q ss_pred EEE-EcCCCCEEEEEe-----CCCeEEEEECCCCceeEE-ec-cCCC------CEEEEEECCCCCeEEEE----------
Q 003840 517 CCH-FSSDGKLLATGG-----HDKKAVLWHTDTLKSKTN-LE-EHSS------LITDVRFSPSMPRLATS---------- 572 (792)
Q Consensus 517 ~la-fspdg~~Lasgs-----~Dg~I~vWdl~t~~~~~~-l~-~h~~------~V~~i~fspdg~~Lasg---------- 572 (792)
.+. ++||+++++.+- .-..|+++|+++++.+.. +. .-.. ....++|..+..++++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~ 212 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSS 212 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcC
Confidence 344 889999877642 234699999999877631 22 0000 11344776444344432
Q ss_pred eCCCcEEEEeCCCCCc-eeEEecccCCCe-EEEEEcCCCCe----EEEEEeCC---CcEEEEEcCC--CeeEEEeeCCee
Q 003840 573 SFDKTVRVWDADNPGY-SLRTFMGHSASV-MSLDFHPNKDD----LICSCDGD---GEIRYWSINN--GSCTRVFKGGTA 641 (792)
Q Consensus 573 s~Dg~V~IWdl~s~~~-~i~~~~~h~~~V-~sl~fspd~~~----ll~sgs~D---g~I~iwdl~~--~~~~~~~~~~~~ 641 (792)
+....|+.|.+-++.. ....+.+....+ .+...+.++.. ++++.+.+ ..+++.|... ++.+........
T Consensus 213 ~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 292 (711)
T 4hvt_A 213 LYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA 292 (711)
T ss_dssp SSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC
T ss_pred CCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc
Confidence 1235699998876432 233343333333 34455666653 45454422 4566667653 433333222222
Q ss_pred EEEEecCCCEEEEE----------EcCCeEEEEECCCCe-------EEEE-ecC-CCCCeEEEEEcCCCCEEEEEeCC--
Q 003840 642 QMRFQPHLGRYLAA----------AAENVVSILDAETQA-------CRLS-LQG-HTKPIDSVCWDPSGELLASVSED-- 700 (792)
Q Consensus 642 ~v~~sp~~~~lla~----------s~dg~I~i~D~~t~~-------~~~~-l~~-h~~~V~sv~~spdg~~Las~s~d-- 700 (792)
.+.....+..++.. ...+.|.++|+.+.. .... +.. ....+..+.|..+ .++++...+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~ 371 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVV 371 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTE
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCE
Confidence 23334443333322 235678889887631 1112 222 3345778888866 455555554
Q ss_pred -eEEEEECCCCC-CcceEEEeecCCCceEEEEEeCCCCEEEEE-EcC---CeEEEEECCCCcEE
Q 003840 701 -SVRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVI-GCY---QSLELWNMSENKTM 758 (792)
Q Consensus 701 -~I~IwDl~s~~-~~~~i~~~~~~~~~i~si~fspdg~~L~sg-s~d---g~I~IwDl~~~~~~ 758 (792)
.|.++|+.++. ....+..+.. ...+..+.+.+++..++.. +.. ..++.+|+. ++..
T Consensus 372 ~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~ 433 (711)
T 4hvt_A 372 AKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK 433 (711)
T ss_dssp EEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred EEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence 67888876542 1111111221 2346666666776544443 332 478888887 5443
No 350
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.98 E-value=0.14 Score=63.83 Aligned_cols=232 Identities=10% Similarity=0.168 Sum_probs=134.8
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEeccc--
Q 003840 519 HFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-- 596 (792)
Q Consensus 519 afspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h-- 596 (792)
-.+|..+.||.=. ..++.|||+++...++.+.-.. .|.-=.|..+. .|+..+ +..|+-|+++....+++.|..|
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~ 147 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSS 147 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchh
Confidence 3456666666554 6789999999877777665433 45556776544 343333 3359999997655666666555
Q ss_pred --CCCeEEEEEcCCCCeEEEEEe------CCCcEEEEEcCCCeeEEEeeCCeeEE---EE--ecCCCEEEEEEc----CC
Q 003840 597 --SASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTAQM---RF--QPHLGRYLAAAA----EN 659 (792)
Q Consensus 597 --~~~V~sl~fspd~~~ll~sgs------~Dg~I~iwdl~~~~~~~~~~~~~~~v---~~--sp~~~~lla~s~----dg 659 (792)
...|..-..+++.+.++++|- -.|.+.+|.++.+.. ..++++..+. .+ .+....+++... .+
T Consensus 148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~ 226 (1630)
T 1xi4_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 226 (1630)
T ss_pred cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCc
Confidence 456777777888888877664 357888888775432 1222222111 11 111223333332 26
Q ss_pred eEEEEECCCC---eEEE------EecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCce
Q 003840 660 VVSILDAETQ---ACRL------SLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 726 (792)
Q Consensus 660 ~I~i~D~~t~---~~~~------~l~~---h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i 726 (792)
.++|.++... ...+ .+.. -.+--.++..++.-.++...+.. .|.+||+.++ .++..-......|
T Consensus 227 kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~~i 303 (1630)
T 1xi4_A 227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGETI 303 (1630)
T ss_pred eEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCCce
Confidence 8888887542 1111 1111 11223345666655666666655 8999999987 5555554455555
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 727 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 727 ~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
...+.+....-+++....|.|.-..+++..++
T Consensus 304 F~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 304 FVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred EEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 55554444444566667776666666665554
No 351
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.46 E-value=0.55 Score=46.70 Aligned_cols=143 Identities=13% Similarity=0.025 Sum_probs=82.8
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE------EEEec--CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC
Q 003840 639 GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC------RLSLQ--GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG 710 (792)
Q Consensus 639 ~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~------~~~l~--~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~ 710 (792)
....++|+|++. |+++ .+|.++-.+..+... -..+- +-. ...++.|+++|.+.++ +++.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCCS
T ss_pred cceeEEECCCcc-EEEE-eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCcC
Confidence 566899999655 5555 888888887755211 11111 111 1478999999998888 6667777765332
Q ss_pred CCcce----EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-------EEEEc-ccCCCeEEEEEeCCCCE
Q 003840 711 SEGEC----VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-------TMTLT-AHEGLIAALAVSTETGY 778 (792)
Q Consensus 711 ~~~~~----i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~-------~~~~~-~h~~~V~sl~fspdg~~ 778 (792)
....- ...-...-..+..+.|.|+|...++. ++.++-+...... ...+. ..-....-+.|++++.+
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l 195 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL 195 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence 21111 11111122467899999999855555 7776544333221 01111 23334455778999887
Q ss_pred EEEEeCCCcEE
Q 003840 779 VASASHDKFVK 789 (792)
Q Consensus 779 LaSgs~DG~I~ 789 (792)
+++. +|.|+
T Consensus 196 ~~v~--~g~~Y 204 (236)
T 1tl2_A 196 FGVQ--GGKFY 204 (236)
T ss_dssp EEEE--TTEEE
T ss_pred EEEe--CCeEE
Confidence 7665 77553
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.44 E-value=0.92 Score=51.08 Aligned_cols=223 Identities=15% Similarity=0.132 Sum_probs=130.9
Q ss_pred eEEEEeCCCcEEEEeCCCCCceeEEeccc-------------------------CCCe--EEEEEc---CCCCeEEEEEe
Q 003840 568 RLATSSFDKTVRVWDADNPGYSLRTFMGH-------------------------SASV--MSLDFH---PNKDDLICSCD 617 (792)
Q Consensus 568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h-------------------------~~~V--~sl~fs---pd~~~ll~sgs 617 (792)
.|.+|+..|.|+|+-+.+ .+.+..+.-. .+.. ..+.+. -||+++|+-.-
T Consensus 72 ~f~SgG~sG~v~v~G~PS-mR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk 150 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPS-MRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDK 150 (638)
T ss_dssp EEEECGGGCCEEEEEETT-TEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred EEeecCcCceEEEEecCC-cceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence 367888889999998876 4443333200 0000 122222 24556665555
Q ss_pred CCCcEEEEEcCCCeeEEEeeC----CeeEEEEe--cCCCEEEEEEc-------CCeE------------EEEECCCCeEE
Q 003840 618 GDGEIRYWSINNGSCTRVFKG----GTAQMRFQ--PHLGRYLAAAA-------ENVV------------SILDAETQACR 672 (792)
Q Consensus 618 ~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~s--p~~~~lla~s~-------dg~I------------~i~D~~t~~~~ 672 (792)
.+..|-..+++..++.++++. .+..++|. |+.+++++++. ||.. ...|.++.+..
T Consensus 151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~ 230 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA 230 (638)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred CCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence 677888999999998887764 34456665 68888888876 3221 12344444444
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeC----------------CeEEEEECCC-------CC--Ccc--eEEEeecC---
Q 003840 673 LSLQGHTKPIDSVCWDPSGELLASVSE----------------DSVRVWTVGS-------GS--EGE--CVHELSCN--- 722 (792)
Q Consensus 673 ~~l~~h~~~V~sv~~spdg~~Las~s~----------------d~I~IwDl~s-------~~--~~~--~i~~~~~~--- 722 (792)
+.+.- ......+..+++|++.++.+. |.|.++++.. ++ ... -+..+.+.
T Consensus 231 ~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~ 309 (638)
T 3sbq_A 231 FQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD 309 (638)
T ss_dssp EEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred EEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence 33321 223444566778888776653 2477777531 11 111 11122221
Q ss_pred ------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC------cE-------EEEcccCCCeEEEEEeCCC
Q 003840 723 ------------GNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSEN------KT-------MTLTAHEGLIAALAVSTET 776 (792)
Q Consensus 723 ------------~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~~~------~~-------~~~~~h~~~V~sl~fspdg 776 (792)
......|.++|||+++++++. +.+|.|+|++.. ++ +....-.-.....+|.++|
T Consensus 310 ~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G 389 (638)
T 3sbq_A 310 GKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG 389 (638)
T ss_dssp TBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred ccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC
Confidence 123456788999999998876 459999998742 11 2222233456788999999
Q ss_pred CEEEEEeCCCcEEEeC
Q 003840 777 GYVASASHDKFVKLWK 792 (792)
Q Consensus 777 ~~LaSgs~DG~I~IWd 792 (792)
....|.--|..|..|+
T Consensus 390 ~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 390 NAYTTLFIDSQVVKWN 405 (638)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred ceEeeeeecceEEEEe
Confidence 5555555799999885
No 353
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.05 E-value=1.7 Score=43.27 Aligned_cols=175 Identities=10% Similarity=-0.031 Sum_probs=93.4
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCC---c--eeEEecc-cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee------
Q 003840 565 SMPRLATSSFDKTVRVWDADNPG---Y--SLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC------ 632 (792)
Q Consensus 565 dg~~Lasgs~Dg~V~IWdl~s~~---~--~i~~~~~-h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~------ 632 (792)
...+|++...| +|++=...... . ....+-. .-..+.+++|+|++. |.++ .+|.++-.+..+...
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccc
Confidence 34466677777 65554444322 1 1222221 124677999999775 4434 678777776654211
Q ss_pred EEEee----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-------EEEecCCCCCeEEEEEcCCCCEEEEEeCCe
Q 003840 633 TRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-------RLSLQGHTKPIDSVCWDPSGELLASVSEDS 701 (792)
Q Consensus 633 ~~~~~----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~-------~~~l~~h~~~V~sv~~spdg~~Las~s~d~ 701 (792)
...+- .....+.|.+++..+++ .||.|+-++..+... ...-..-=..+..|.|.|+|.+.++. ++.
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ 155 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ 155 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence 11111 11366788888766666 669998887633110 11111111457899999999988888 556
Q ss_pred EEEEECCCCCC--c-ceEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003840 702 VRVWTVGSGSE--G-ECVHELS-CNGNKFHSCVFHPTYPSLLVIGCYQSLE 748 (792)
Q Consensus 702 I~IwDl~s~~~--~-~~i~~~~-~~~~~i~si~fspdg~~L~sgs~dg~I~ 748 (792)
++-+...+... . .....+- ..-.....+.|.+++..+++. ++.|+
T Consensus 156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 44333221110 0 0111111 222345556788888755555 66443
No 354
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.86 E-value=0.19 Score=59.34 Aligned_cols=149 Identities=14% Similarity=0.195 Sum_probs=82.3
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCceeE--EeccCCCCEEEEEECCCCCeEEEEeCCC--cEEEEeCCCCCceeEE
Q 003840 523 DGKLLATGGHD------KKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRT 592 (792)
Q Consensus 523 dg~~Lasgs~D------g~I~vWdl~t~~~~~--~l~~h~~~V~~i~fspdg~~Lasgs~Dg--~V~IWdl~s~~~~i~~ 592 (792)
++++++.|+.+ ..+.+||..+.+-.. .+......- +++...++++++.|+.++ .+.+||+.+.......
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 77777887754 358889988753322 222222222 233334788888888765 6899999874322111
Q ss_pred ----ecccCCCeEEEEEcCCCCeEEEEEeC--C-----CcEEEEEcCCCe------eEEEeeC----Ce-eEEEEecCCC
Q 003840 593 ----FMGHSASVMSLDFHPNKDDLICSCDG--D-----GEIRYWSINNGS------CTRVFKG----GT-AQMRFQPHLG 650 (792)
Q Consensus 593 ----~~~h~~~V~sl~fspd~~~ll~sgs~--D-----g~I~iwdl~~~~------~~~~~~~----~~-~~v~~sp~~~ 650 (792)
.........++.+..+.+.+++.|+. + ..+.+||+.+.. ....... .. ..+....++.
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~ 609 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK 609 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence 11112222335555553567767765 2 458999998877 2222111 11 1233333245
Q ss_pred EEEEEEc--------CCeEEEEECCCCeEE
Q 003840 651 RYLAAAA--------ENVVSILDAETQACR 672 (792)
Q Consensus 651 ~lla~s~--------dg~I~i~D~~t~~~~ 672 (792)
.+++|+. ...|.+||+.+.+-.
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 5555553 346999999887654
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.33 E-value=8 Score=42.89 Aligned_cols=226 Identities=14% Similarity=0.090 Sum_probs=115.1
Q ss_pred CCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCC--ceeEEec---------ccCCCeEEEEEcCC---CCeEEEEEeC-
Q 003840 555 SLITDVRFSPSMP-RLATSSFDKTVRVWDADNPG--YSLRTFM---------GHSASVMSLDFHPN---KDDLICSCDG- 618 (792)
Q Consensus 555 ~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s~~--~~i~~~~---------~h~~~V~sl~fspd---~~~ll~sgs~- 618 (792)
..-+.|+|.|++. .|+++...|.|++++.+... ..+..+. ........|+|+|+ +..++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4568999999996 56667788999999764311 1222221 11356789999996 2334333322
Q ss_pred -C----------CcEEEEEcCCC----------eeEEEee-----CCeeEEEEecCCCEEEEEEcCC-------------
Q 003840 619 -D----------GEIRYWSINNG----------SCTRVFK-----GGTAQMRFQPHLGRYLAAAAEN------------- 659 (792)
Q Consensus 619 -D----------g~I~iwdl~~~----------~~~~~~~-----~~~~~v~~sp~~~~lla~s~dg------------- 659 (792)
+ ..|.-|.+..+ +.+..+. .....+.|.|++..+++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 14545665421 2222222 1245689999987666655432
Q ss_pred ----eEEEEECCCC---------------------eEEEEecCCCCCeEEEEEcCC-----CC-EEEEEeC---C--eEE
Q 003840 660 ----VVSILDAETQ---------------------ACRLSLQGHTKPIDSVCWDPS-----GE-LLASVSE---D--SVR 703 (792)
Q Consensus 660 ----~I~i~D~~t~---------------------~~~~~l~~h~~~V~sv~~spd-----g~-~Las~s~---d--~I~ 703 (792)
.|.-+|.+.. ..++. .+|.. ...++|+|. |+ +++.+.. + .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 2333343331 00111 12222 346899996 44 3443321 1 123
Q ss_pred EEECCCCCC---cceEEEeecCC-CceEEEEEeCC-------CCEEEEEEcCCeEEEEECCCCc----EEEEc-------
Q 003840 704 VWTVGSGSE---GECVHELSCNG-NKFHSCVFHPT-------YPSLLVIGCYQSLELWNMSENK----TMTLT------- 761 (792)
Q Consensus 704 IwDl~s~~~---~~~i~~~~~~~-~~i~si~fspd-------g~~L~sgs~dg~I~IwDl~~~~----~~~~~------- 761 (792)
|..+..+.. ...+..+..+. ..+..+.|-.. +. ++++...+.|....++... ...+.
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~-~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~ 330 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGS-YVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSC 330 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTC-EEEEETTSCEEEEEC-----CCEEEEECEEETTSS
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcce-EEEecCCCcEEEEEeCCCCceeeEEEeecCCcccc
Confidence 444433321 12344443221 45667776432 23 4555555777766665432 11221
Q ss_pred --ccCCCeEEEEEeCCCCEEEEEe
Q 003840 762 --AHEGLIAALAVSTETGYVASAS 783 (792)
Q Consensus 762 --~h~~~V~sl~fspdg~~LaSgs 783 (792)
.....+.++.+.|||.++++..
T Consensus 331 ~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 331 RGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CSCCCSEEEEEEECTTCCEEEEEE
T ss_pred cccccCcceEEEECCCCCEEEEec
Confidence 1235789999999999887765
No 356
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=94.25 E-value=7.1 Score=42.05 Aligned_cols=186 Identities=10% Similarity=0.091 Sum_probs=102.1
Q ss_pred cEEEEeCCCCC-ceeEEecc------cCCCeEEEEEc---CC----CCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeE
Q 003840 577 TVRVWDADNPG-YSLRTFMG------HSASVMSLDFH---PN----KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 642 (792)
Q Consensus 577 ~V~IWdl~s~~-~~i~~~~~------h~~~V~sl~fs---pd----~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~ 642 (792)
.|.+||+.++. ..++.+.- ....+..|.+. +. +.+..++=..++.|.++|+.+++.-+.....
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG---
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC---
Confidence 36677777631 44444432 23457788877 22 2333334445788999999999887765321
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC----CCEEEEEeCCeEEEEECCC-----CCCc
Q 003840 643 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS----GELLASVSEDSVRVWTVGS-----GSEG 713 (792)
Q Consensus 643 v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd----g~~Las~s~d~I~IwDl~s-----~~~~ 713 (792)
|.|+....+ .-+|.-. .+ ...|..|+++|+ ++.|+......-++|.+.+ ....
T Consensus 201 --~~pd~~~~~--~i~G~~~-----------~~---~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~ 262 (381)
T 3q6k_A 201 --FKAERPTKF--DYGGKEY-----------EF---KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGK 262 (381)
T ss_dssp --GSCCSCEEE--EETTEEE-----------EE---CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCC
T ss_pred --CccccCcce--EECCEEe-----------Ee---ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchh
Confidence 233311111 1122211 11 245899999998 7878777665445555432 2111
Q ss_pred ceEEEeecCC--CceEEEEEe-CCCCEEEEEEcCCeEEEEECCC-C----cEE--EEcccCCCeEEEEEeCCCCEEEEEe
Q 003840 714 ECVHELSCNG--NKFHSCVFH-PTYPSLLVIGCYQSLELWNMSE-N----KTM--TLTAHEGLIAALAVSTETGYVASAS 783 (792)
Q Consensus 714 ~~i~~~~~~~--~~i~si~fs-pdg~~L~sgs~dg~I~IwDl~~-~----~~~--~~~~h~~~V~sl~fspdg~~LaSgs 783 (792)
..+..+-... ......++. .+|..+++--..+.|..|+..+ . ... .....-..+..+.+..++.+.+.++
T Consensus 263 ~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 263 LNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred hceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 2222222222 234455675 4665555556667999999876 1 112 2222233578888888887666554
No 357
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=93.98 E-value=8 Score=41.60 Aligned_cols=229 Identities=10% Similarity=0.117 Sum_probs=116.2
Q ss_pred CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc----------eeEEecc-cCCCeEEEEEcCCCCeEEEEEeCCCcEEE
Q 003840 556 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----------SLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRY 624 (792)
Q Consensus 556 ~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~----------~i~~~~~-h~~~V~sl~fspd~~~ll~sgs~Dg~I~i 624 (792)
.|..|+. .....+.-..||.|+.|-....+. ....+.. ....+..+++.....+.+ .-..||.|+.
T Consensus 54 ~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~-al~~~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCL-ALSSEGEVYS 130 (389)
T ss_dssp CEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEE-EEETTSCEEE
T ss_pred ceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEE-EEcCCCCEEE
Confidence 3444443 234566667889999996543111 1111221 223455566655544444 5567999999
Q ss_pred EEcCCCe---------e--EEEee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----------eEEEEecC-CC
Q 003840 625 WSINNGS---------C--TRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-----------ACRLSLQG-HT 679 (792)
Q Consensus 625 wdl~~~~---------~--~~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~-----------~~~~~l~~-h~ 679 (792)
|-....- . ...+. .....+.+.......++...+|.|+.|-.... .....+.. ..
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~ 210 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG 210 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC
Confidence 9654310 0 11111 11233445555677788888999999965321 11111211 23
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC------c--ceEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003840 680 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------G--ECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLEL 749 (792)
Q Consensus 680 ~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~------~--~~i~~~~~-~~~~i~si~fspdg~~L~sgs~dg~I~I 749 (792)
..|..|+......+.++...+ .|+.|-...... . .....+.. ....|..++.. ..+.++...+|.|+.
T Consensus 211 ~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~ 288 (389)
T 3kci_A 211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYT 288 (389)
T ss_dssp SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEE
Confidence 456666654433445555555 899997543110 0 01111111 12235544443 345666678899999
Q ss_pred EECCCC---------c---EEEEccc-CCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 750 WNMSEN---------K---TMTLTAH-EGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 750 wDl~~~---------~---~~~~~~h-~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
|-.... . +..+..- ...|..|+.. ....+....||.|+.|
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTW 341 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEe
Confidence 965421 1 1122211 2345555543 3344445678888887
No 358
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=93.97 E-value=6.6 Score=46.75 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=77.8
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeEEeccC-------CCCEEEEEECCCC-CeEEEEeCCCc----E
Q 003840 512 TSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSPSM-PRLATSSFDKT----V 578 (792)
Q Consensus 512 ~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h-------~~~V~~i~fspdg-~~Lasgs~Dg~----V 578 (792)
.+.|.+|+++|. ...+++++..+.|...+ +.++.-..+..+ ...|.+|++.|.. ..++++..+.. .
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 458999999985 45667777777766554 334333333322 2469999999843 44544443211 4
Q ss_pred EEEeCCCCCceeEEeccc---------CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---------CCe
Q 003840 579 RVWDADNPGYSLRTFMGH---------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGT 640 (792)
Q Consensus 579 ~IWdl~s~~~~i~~~~~h---------~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---------~~~ 640 (792)
.||.-...+..-..+... ...+..|+++|.....++.+...+.|. .....++.-..+. ..+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 455544445444333210 113567888887655666665444332 1222222211111 234
Q ss_pred eEEEEecCC-CEEEEEEcC
Q 003840 641 AQMRFQPHL-GRYLAAAAE 658 (792)
Q Consensus 641 ~~v~~sp~~-~~lla~s~d 658 (792)
..+.+.|.. +.++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 567777754 466666654
No 359
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=93.42 E-value=7.1 Score=41.15 Aligned_cols=260 Identities=9% Similarity=0.035 Sum_probs=133.1
Q ss_pred CEEEEEeCCCeEEEEECCCCce-------e--EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE---eCCCC-----C
Q 003840 525 KLLATGGHDKKAVLWHTDTLKS-------K--TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW---DADNP-----G 587 (792)
Q Consensus 525 ~~Lasgs~Dg~I~vWdl~t~~~-------~--~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW---dl~s~-----~ 587 (792)
.++++.+.+|.|+--.+.+.+. + ..++ ..+.+..+........|+.-+..|.++.. ++... +
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 3677778888888665432111 1 1122 23345555444455566666677766544 44321 1
Q ss_pred ceeEEec--ccCCCeEEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeE-------EEeeC--CeeEEEEecCCCEEEE
Q 003840 588 YSLRTFM--GHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCT-------RVFKG--GTAQMRFQPHLGRYLA 654 (792)
Q Consensus 588 ~~i~~~~--~h~~~V~sl~fspd--~~~ll~sgs~Dg~I~iwdl~~~~~~-------~~~~~--~~~~v~~sp~~~~lla 654 (792)
..+..+. .....|.++....+ ...+++..+.+|.|+...+...... ..++. ....+........++.
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence 2211111 12345655544332 2446668899999999987653221 12222 2333444455678999
Q ss_pred EEcCCeEEEEECC--CC---------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc----ceEEE
Q 003840 655 AAAENVVSILDAE--TQ---------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG----ECVHE 718 (792)
Q Consensus 655 ~s~dg~I~i~D~~--t~---------~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~----~~i~~ 718 (792)
.+..|.+..+... .- .....+. ....|.++...+++.+|+..+.. .++.-.+...... .-+..
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 9999998888776 21 1111222 33457777666666677777776 7777776433211 12222
Q ss_pred ee--cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-------EEc--ccCCCeEEEEEeC-CCCEEEEEeCCC
Q 003840 719 LS--CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-------TLT--AHEGLIAALAVST-ETGYVASASHDK 786 (792)
Q Consensus 719 ~~--~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-------~~~--~h~~~V~sl~fsp-dg~~LaSgs~DG 786 (792)
+. .....+..+....+...|+..+.+|.+.-++...-... ... .....|.++...+ +...+.+.+++|
T Consensus 242 ~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 242 VMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 22 22344555555555667888888888777776442211 111 2234566665544 334466666655
No 360
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.39 E-value=2.1 Score=44.19 Aligned_cols=239 Identities=13% Similarity=0.052 Sum_probs=115.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec
Q 003840 515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 594 (792)
Q Consensus 515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~ 594 (792)
|..|+....- .++. . ||.|+.|-......+..-......|..|+...+- .++. . ||.|+.|-....+..-. -.
T Consensus 26 i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~-P~ 98 (282)
T 3qhy_B 26 VDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV-PA 98 (282)
T ss_dssp CCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC-CG
T ss_pred CcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC-Cc
Confidence 5555544332 2233 4 8888888765422211111123357777765443 3333 4 89999998765332211 11
Q ss_pred ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003840 595 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL 673 (792)
Q Consensus 595 ~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~-~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~ 673 (792)
.-...|..|+.... +.+ .-. ||.|+.|-.+..-.+. ..........+.......++.. ||.|+.|-......+.
T Consensus 99 ~~~~~v~~ia~G~~--hs~-al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg 173 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASY-ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTT 173 (282)
T ss_dssp GGSSSEEEEEEETT--EEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTS
T ss_pred ccCCCeEEEECcCC--EEE-EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCC
Confidence 12346777776543 333 334 9999999765422111 0011111222333334444444 7888888765421110
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003840 674 SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 753 (792)
Q Consensus 674 ~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~ 753 (792)
.-......|..|+.-.+. .++. .++.|+.|-......... -......|..++.... +.++.. +|.|+.|-..
T Consensus 174 ~p~~~~~~v~~i~~G~~h-s~al-~~G~v~~wG~n~~gqlg~---p~~~~~~v~~i~~G~~--h~~al~-~g~v~~wG~n 245 (282)
T 3qhy_B 174 VPAEAQSGVDDVAGGIFH-SLAL-KDGKVIAWGDNRYKQTTV---PTEALSGVSAIASGEW--YSLALK-NGKVIAWGSS 245 (282)
T ss_dssp CCGGGGSSEEEEEECSSE-EEEE-ETTEEEEEECCTTSTTCC---CGGGGSSCCEEEECSS--CEEEEE-TTEEEEESTT
T ss_pred CceecCCCeEEEEecCCE-EEEE-ECCeEEEEECCCCCCCCC---CcccCCCceEEEcCCC--EEEEEE-CCEEEEecCC
Confidence 000112456666654333 2333 444888987654321110 0011123555554333 333444 8999999765
Q ss_pred CCcEEEEcccCCCeEEEEEeCCC
Q 003840 754 ENKTMTLTAHEGLIAALAVSTET 776 (792)
Q Consensus 754 ~~~~~~~~~h~~~V~sl~fspdg 776 (792)
....+.+ ...|..++.....
T Consensus 246 ~~gq~~v---~~~v~~iaaG~~h 265 (282)
T 3qhy_B 246 RTAPSSV---QSGVSSIEAGPNA 265 (282)
T ss_dssp CCCCGGG---SSCEEEEEECSSC
T ss_pred CCccccC---CCCcEEEEECcCe
Confidence 5433221 3357777665443
No 361
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.03 E-value=1.9 Score=44.60 Aligned_cols=215 Identities=14% Similarity=0.060 Sum_probs=107.6
Q ss_pred CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE
Q 003840 555 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 634 (792)
Q Consensus 555 ~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~ 634 (792)
..|..|+....- .++. . ||.|+.|-....+..-. -......|..|+.... +.++. . ||.|+.|-.+..-.+.
T Consensus 24 ~~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~-p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 24 SGVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SSCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSC-CGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCC-CccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCC
Confidence 357777765432 2333 4 99999998765332211 1112335667766533 34434 4 8999999866422111
Q ss_pred ---EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCC
Q 003840 635 ---VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 711 (792)
Q Consensus 635 ---~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~ 711 (792)
.+...+..++ ......++.. +|.|+.|-....-.+-........|..|+.-.+..++ ..++.|+.|-.....
T Consensus 96 ~P~~~~~~v~~ia--~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~--l~~G~v~~wG~n~~g 170 (282)
T 3qhy_B 96 VPAEARSGVDAIA--AGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA--VKNGGVIAWGDNYFG 170 (282)
T ss_dssp CCGGGSSSEEEEE--EETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE--EETTEEEEEECCTTS
T ss_pred CCcccCCCeEEEE--CcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE--EECCEEEEecCCCCC
Confidence 1112333333 3344556666 9999999765421110001122346666654333222 334588888765432
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003840 712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 790 (792)
Q Consensus 712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I 790 (792)
.... .......|..++.... +.++. .+|.|+.|-......+ .-......|..|+...+. .++.. ||.|+.
T Consensus 171 qlg~---p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~ 241 (282)
T 3qhy_B 171 QTTV---PAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVIA 241 (282)
T ss_dssp TTSC---CGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEEE
T ss_pred CCCC---ceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEEE
Confidence 2110 0001234555554333 33444 6899999976543222 111222356666654433 33333 888888
Q ss_pred e
Q 003840 791 W 791 (792)
Q Consensus 791 W 791 (792)
|
T Consensus 242 w 242 (282)
T 3qhy_B 242 W 242 (282)
T ss_dssp E
T ss_pred e
Confidence 7
No 362
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=92.84 E-value=13 Score=40.43 Aligned_cols=227 Identities=8% Similarity=0.050 Sum_probs=115.4
Q ss_pred CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-----------eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEE
Q 003840 555 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-----------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 623 (792)
Q Consensus 555 ~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~-----------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~ 623 (792)
..|..|+.. ....+.-..||.|+.|-....+. ..-........|..|+... ...+.-..||.|+
T Consensus 75 ~~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~---~hs~al~~~G~v~ 149 (423)
T 3mvd_K 75 PDAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD---SHSACLLEDGRVF 149 (423)
T ss_dssp SSEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS---SEEEEEETTSCEE
T ss_pred CCceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc---CeEEEEeCCCeEE
Confidence 346666654 44666777899999996643211 1111111234566666543 2333556799999
Q ss_pred EEEc--CC-Cee---------E-EEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC---------------------
Q 003840 624 YWSI--NN-GSC---------T-RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ--------------------- 669 (792)
Q Consensus 624 iwdl--~~-~~~---------~-~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~--------------------- 669 (792)
.|-. .. +.+ . ..+......+.+.....+.++...+|.|+.|-....
T Consensus 150 ~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 229 (423)
T 3mvd_K 150 AWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRD 229 (423)
T ss_dssp EEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTT
T ss_pred EEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccc
Confidence 9985 22 221 0 011122234445555667788888999999964321
Q ss_pred --eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC--------cceEEEeecCCCceEEEEEeCCCCEE
Q 003840 670 --ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE--------GECVHELSCNGNKFHSCVFHPTYPSL 738 (792)
Q Consensus 670 --~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~--------~~~i~~~~~~~~~i~si~fspdg~~L 738 (792)
.+..........|..|+.... ..++....+ .|+.|-...... .............|..++. -..+.
T Consensus 230 ~~~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~ht 306 (423)
T 3mvd_K 230 LLRPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHHT 306 (423)
T ss_dssp TSSCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSEE
T ss_pred ccCCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCeE
Confidence 111111112234555554322 122222344 788886543210 1111111112334554443 34566
Q ss_pred EEEEcCCeEEEEECCCC---------c----EEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 739 LVIGCYQSLELWNMSEN---------K----TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 739 ~sgs~dg~I~IwDl~~~---------~----~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
++...+|.|+.|-.... . +..+..-...|..|+.... +.+....||.|+.|
T Consensus 307 ~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~w 370 (423)
T 3mvd_K 307 VILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSW 370 (423)
T ss_dssp EEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEE
T ss_pred EEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEE
Confidence 77788899999965321 1 1122222335777766533 33344678888888
No 363
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=92.71 E-value=20 Score=42.49 Aligned_cols=143 Identities=13% Similarity=0.176 Sum_probs=72.8
Q ss_pred CCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCceeEEeccc-------CCCeEEEEEcCCCCeEEEEEeCCCc----
Q 003840 554 SSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDGDGE---- 621 (792)
Q Consensus 554 ~~~V~~i~fspd-g~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h-------~~~V~sl~fspd~~~ll~sgs~Dg~---- 621 (792)
...|.+|+++|. ...+++++..+.|...+ ..+.....+..+ ...|.+|++.|.+...++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 468999999995 45677777777665444 334444444332 2469999999865444444432211
Q ss_pred EEEE-EcCCCeeEEEeeC------------CeeEEEEecCCC-EEEEEEcCCeEEEEECCCC---eEEEEec---CCCCC
Q 003840 622 IRYW-SINNGSCTRVFKG------------GTAQMRFQPHLG-RYLAAAAENVVSILDAETQ---ACRLSLQ---GHTKP 681 (792)
Q Consensus 622 I~iw-dl~~~~~~~~~~~------------~~~~v~~sp~~~-~lla~s~dg~I~i~D~~t~---~~~~~l~---~h~~~ 681 (792)
-.|| ....++.-..+.. .+..+++.|... .++++...+.|.. ..+.+ +.+..+. .....
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTC
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCC
Confidence 2333 3333332222211 124577777643 4455443443322 22222 2221111 11245
Q ss_pred eEEEEEcCC-CCEEEEEeC
Q 003840 682 IDSVCWDPS-GELLASVSE 699 (792)
Q Consensus 682 V~sv~~spd-g~~Las~s~ 699 (792)
+..|.++|. +..|+++..
T Consensus 171 ~~~i~~~p~~~~~~~~~~~ 189 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASAT 189 (789)
T ss_dssp EEEEEECTTSTTCEEEEES
T ss_pred eEEEEECCCCCCEEEEEEc
Confidence 788999884 445555543
No 364
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=91.46 E-value=12 Score=38.39 Aligned_cols=206 Identities=9% Similarity=-0.028 Sum_probs=99.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEE---CCCCceeEEeccCCCCEEEEEECC--CCCeEEEEeCCCcEEEEeCCCC-
Q 003840 513 SKVICCHFSSDGKLLATGGHDKKAVLWH---TDTLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDADNP- 586 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~Dg~I~vWd---l~t~~~~~~l~~h~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWdl~s~- 586 (792)
+.+.++.......+|+.-+.+|.++--. +..+.....+. ....|..+.. . +..++++++.+|.|+...+..-
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 4566655555555677777788776543 32221111133 3556666654 4 4678999999999999987642
Q ss_pred ----CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEE
Q 003840 587 ----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 662 (792)
Q Consensus 587 ----~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~ 662 (792)
+.....+. ..+.+..+........++ ..+..|.++.++...-.....- ..-+.
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~il-l~T~~G~~~r~~~~eip~~gR~---------------------a~Gv~ 158 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSVDETHIL-LFTKKGRVARFSVREVPPSTPG---------------------ARGVQ 158 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECCSSCEEE-EEETTSEEEEEEGGGSCBCCTT---------------------CCCEE
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeCCCCEEE-EEECCCEEEEEEhhhCCCcCCC---------------------CCCEE
Confidence 11111122 123344443333323333 4455666655554321110000 00011
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC----cceEEEeecCCCceEEEEEeCCCCE
Q 003840 663 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE----GECVHELSCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 663 i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~----~~~i~~~~~~~~~i~si~fspdg~~ 737 (792)
..+ +. ....|..+....++.+|+..+.. .++...+..... .+-+..+ .....+..+....+...
T Consensus 159 ~i~---------L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~ 227 (276)
T 3no0_A 159 GIK---------LE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVE 227 (276)
T ss_dssp CCC---------CC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEE
T ss_pred EEc---------cC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCE
Confidence 111 11 12334444433445566666655 677766543211 1122222 22344544444444456
Q ss_pred EEEEEcCCeEEE--EECCC
Q 003840 738 LLVIGCYQSLEL--WNMSE 754 (792)
Q Consensus 738 L~sgs~dg~I~I--wDl~~ 754 (792)
++..+.+|.+.. ++..+
T Consensus 228 i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 228 LLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEETTSCEEEEEEEGGG
T ss_pred EEEEcCCCeEEEeeeCHHH
Confidence 777788887777 76644
No 365
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=91.32 E-value=27 Score=40.98 Aligned_cols=105 Identities=11% Similarity=0.094 Sum_probs=59.2
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEeccC-------CCCEEEEEECC-CCCeEEEEeCC-------C
Q 003840 513 SKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSP-SMPRLATSSFD-------K 576 (792)
Q Consensus 513 ~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h-------~~~V~~i~fsp-dg~~Lasgs~D-------g 576 (792)
+.|.+|+|+|.. ..|+++...+.|+.++ +.++.-..+..+ ...|.+|++.| +...|+++... +
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 379999999863 4566676667666654 233333333222 24599999998 33444444321 1
Q ss_pred cEEEEeCCCCCceeEEecc-cC--------CCeEEEEEcCCCCeEEEEEeC
Q 003840 577 TVRVWDADNPGYSLRTFMG-HS--------ASVMSLDFHPNKDDLICSCDG 618 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~~~~-h~--------~~V~sl~fspd~~~ll~sgs~ 618 (792)
...||.-...++....+.. .. ..+.+|+++|.+...++.+..
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 2556665554544333221 11 124679999876555656653
No 366
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=89.77 E-value=22 Score=37.30 Aligned_cols=69 Identities=6% Similarity=-0.039 Sum_probs=40.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECC---------CCceeEE---eccCCCCEEEE-EECC--CCCeEEEEeCCCcEE
Q 003840 515 VICCHFSSDGKLLATGGHDKKAVLWHTD---------TLKSKTN---LEEHSSLITDV-RFSP--SMPRLATSSFDKTVR 579 (792)
Q Consensus 515 V~~lafspdg~~Lasgs~Dg~I~vWdl~---------t~~~~~~---l~~h~~~V~~i-~fsp--dg~~Lasgs~Dg~V~ 579 (792)
+..+........|+..+..|.++-+... .|..+.. +. ....|..+ .... ++.+|+.++.+|.++
T Consensus 41 l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iK 119 (323)
T 1wp5_A 41 LLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVK 119 (323)
T ss_dssp EEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEE
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEE
Confidence 4444444445577777788887766542 1221111 22 23345544 4432 256899999999999
Q ss_pred EEeCC
Q 003840 580 VWDAD 584 (792)
Q Consensus 580 IWdl~ 584 (792)
...+.
T Consensus 120 rt~l~ 124 (323)
T 1wp5_A 120 KTELK 124 (323)
T ss_dssp EEEGG
T ss_pred EeEHH
Confidence 98875
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=87.47 E-value=25 Score=36.93 Aligned_cols=178 Identities=13% Similarity=0.087 Sum_probs=102.3
Q ss_pred eEEEEEeCCCcEEEEEcCCCee-------EE--Eee--CCeeEEEEecCCCEEEEEEcCCeEEEEEC---CC------Ce
Q 003840 611 DLICSCDGDGEIRYWSINNGSC-------TR--VFK--GGTAQMRFQPHLGRYLAAAAENVVSILDA---ET------QA 670 (792)
Q Consensus 611 ~ll~sgs~Dg~I~iwdl~~~~~-------~~--~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~---~t------~~ 670 (792)
.++++.+.+|.|+--.+.+.+. +. .++ ..+..+........++..+..|.++.+.. .. +.
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 4566778888888766432111 11 111 12333444455677888888887666543 21 22
Q ss_pred EEEEecC--CCCCeEEEEEcC---CCCEEEEEeCC-eEEEEECCCCCCcc--eE--EEeecCCCceEEEEEeCCCCEEEE
Q 003840 671 CRLSLQG--HTKPIDSVCWDP---SGELLASVSED-SVRVWTVGSGSEGE--CV--HELSCNGNKFHSCVFHPTYPSLLV 740 (792)
Q Consensus 671 ~~~~l~~--h~~~V~sv~~sp---dg~~Las~s~d-~I~IwDl~s~~~~~--~i--~~~~~~~~~i~si~fspdg~~L~s 740 (792)
.+..+.. ....|.++.... +..+++..+.+ .|+...+....... -+ ..+.. +..+..+........|+.
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEE
T ss_pred EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEE
Confidence 2211111 234455554333 46788888877 88888875532211 11 12222 345666666666678999
Q ss_pred EEcCCeEEEEECC--CCcEE----------EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003840 741 IGCYQSLELWNMS--ENKTM----------TLTAHEGLIAALAVSTETGYVASASHDKFVKL 790 (792)
Q Consensus 741 gs~dg~I~IwDl~--~~~~~----------~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I 790 (792)
.+..|.+..+... .-... .+ .....|.++....++.+|+.++..|.++.
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr 223 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKR 223 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEE
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEE
Confidence 9999988888776 32111 12 23455777766666778889999998874
No 368
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=86.72 E-value=37 Score=36.39 Aligned_cols=162 Identities=9% Similarity=0.093 Sum_probs=90.2
Q ss_pred eEEEEECCCC--ceeEEecc------CCCCEEEEEEC---CC----CCeEEEE-eCCCcEEEEeCCCCCceeEEec----
Q 003840 535 KAVLWHTDTL--KSKTNLEE------HSSLITDVRFS---PS----MPRLATS-SFDKTVRVWDADNPGYSLRTFM---- 594 (792)
Q Consensus 535 ~I~vWdl~t~--~~~~~l~~------h~~~V~~i~fs---pd----g~~Lasg-s~Dg~V~IWdl~s~~~~i~~~~---- 594 (792)
+|.+||+.+. +.++++.- ....+.+|++. ++ +.+++.+ +.++-|.|||+.+ +...+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~-~~swRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKK-QDSWNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTT-TEEEEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCC-CcEEEEccCCCc
Confidence 6889999998 88877653 23567888887 22 3344444 3467799999987 33333321
Q ss_pred ----------cc----CCCeEEEEEcCC----CCeEEEEEeCCCcEEEEE---cCCC---eeEEEe--eCC-ee--EEEE
Q 003840 595 ----------GH----SASVMSLDFHPN----KDDLICSCDGDGEIRYWS---INNG---SCTRVF--KGG-TA--QMRF 645 (792)
Q Consensus 595 ----------~h----~~~V~sl~fspd----~~~ll~sgs~Dg~I~iwd---l~~~---~~~~~~--~~~-~~--~v~~ 645 (792)
+. ...|..|+++|+ ++.|.+..-....++-.. ++.. ..++.+ ++. .. .+++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 10 246788888887 555555544333333333 1111 112222 111 22 3445
Q ss_pred ecCCCEEEE-EEcCCeEEEEECCC-C------eEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 003840 646 QPHLGRYLA-AAAENVVSILDAET-Q------ACRLSLQGHTKPIDSVCWDPSGELLASVS 698 (792)
Q Consensus 646 sp~~~~lla-~s~dg~I~i~D~~t-~------~~~~~l~~h~~~V~sv~~spdg~~Las~s 698 (792)
.+..+.++. --..+.|..|+..+ . ..+.. ...-..+..+.+..+|.+.+...
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~-d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT-SSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE-CTTCCSEEEEEECTTSCEEEEEC
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE-CCCccccCeEEECCCCeEEEEEC
Confidence 434455444 44578999999876 1 22222 11334577788877776555443
No 369
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=86.13 E-value=59 Score=38.09 Aligned_cols=60 Identities=12% Similarity=0.165 Sum_probs=36.6
Q ss_pred CCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCceeEEeccc-------CCCeEEEEEcCCCC-eEEEEE
Q 003840 555 SLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTFMGH-------SASVMSLDFHPNKD-DLICSC 616 (792)
Q Consensus 555 ~~V~~i~fspdg-~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h-------~~~V~sl~fspd~~-~ll~sg 616 (792)
+.|..|+|+|.. ..|+++...+.|..++ ..+.....+..+ ...|.+|+++|.+. .+++.+
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~--D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD--PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE--TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC--CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 379999999964 4666676666555554 334444444332 24599999998543 444443
No 370
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=84.90 E-value=39 Score=35.03 Aligned_cols=228 Identities=10% Similarity=0.048 Sum_probs=121.7
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcee---------EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC---C---
Q 003840 522 SDGKLLATGGHDKKAVLWHTDTLKSK---------TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN---P--- 586 (792)
Q Consensus 522 pdg~~Lasgs~Dg~I~vWdl~t~~~~---------~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s---~--- 586 (792)
++..++++.+.+|.|+-..+...+.. ..++. .+.+..+........++..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 45668889999999998876543221 11222 33445555544556788888888877665542 1
Q ss_pred --Cce---eEEecccCCCeEEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCee-------EEEeeC--CeeEEEEecCCC
Q 003840 587 --GYS---LRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSC-------TRVFKG--GTAQMRFQPHLG 650 (792)
Q Consensus 587 --~~~---i~~~~~h~~~V~sl~fspd--~~~ll~sgs~Dg~I~iwdl~~~~~-------~~~~~~--~~~~v~~sp~~~ 650 (792)
+.. ...+. ....|.++...++ ....++..+..|.++...+..... ...++. .+..+.......
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 163 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence 110 01122 2334555543321 223445778899999988754321 112222 233344444567
Q ss_pred EEEEEEcCCeEEEEECCC---------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC----cceE
Q 003840 651 RYLAAAAENVVSILDAET---------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE----GECV 716 (792)
Q Consensus 651 ~lla~s~dg~I~i~D~~t---------~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~----~~~i 716 (792)
.++..+.+|.+..+.... +.....+. ....|.++....++..|++.+.. .++.+++..... ..-+
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv 242 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGY 242 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCE
Confidence 899999999988887643 12222233 23456666655556666666666 777787743211 1112
Q ss_pred EEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003840 717 HELS---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 752 (792)
Q Consensus 717 ~~~~---~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl 752 (792)
..+. .....+..+....+...++..+..|.+.-...
T Consensus 243 ~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 243 TSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA 281 (312)
T ss_dssp ECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred EeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 2222 22234444333345556666677775443444
No 371
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=84.78 E-value=45 Score=35.59 Aligned_cols=230 Identities=10% Similarity=0.034 Sum_probs=124.5
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC---------CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC---CCC--
Q 003840 521 SSDGKLLATGGHDKKAVLWHTDT---------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA---DNP-- 586 (792)
Q Consensus 521 spdg~~Lasgs~Dg~I~vWdl~t---------~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl---~s~-- 586 (792)
-++..++++.+.+|.|+--.+.. +.....++. .+.+..+........|+..+..|.++-+.. ...
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46777999999999999865532 222233333 455655555555667777788887665543 221
Q ss_pred ---CceeE---EecccCCCeEEEEEcC--CCCeEEEEEeCCCcEEEEEcCCCee-------EEEeeC--CeeEEEEecCC
Q 003840 587 ---GYSLR---TFMGHSASVMSLDFHP--NKDDLICSCDGDGEIRYWSINNGSC-------TRVFKG--GTAQMRFQPHL 649 (792)
Q Consensus 587 ---~~~i~---~~~~h~~~V~sl~fsp--d~~~ll~sgs~Dg~I~iwdl~~~~~-------~~~~~~--~~~~v~~sp~~ 649 (792)
+..+. .+. ....|.++.... +...+|+.++..|.++...+..... ...++. ....+......
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 11111 122 334565554432 1233566888999999988754321 111222 22334444455
Q ss_pred CEEEEEEcCCeEEEEECCC---------CeEEEEecCCCCCeEEEEEcC-------------------------------
Q 003840 650 GRYLAAAAENVVSILDAET---------QACRLSLQGHTKPIDSVCWDP------------------------------- 689 (792)
Q Consensus 650 ~~lla~s~dg~I~i~D~~t---------~~~~~~l~~h~~~V~sv~~sp------------------------------- 689 (792)
..++..+.+|.+..|+... |.....+. ....|.++...+
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC-----------------------------
T ss_pred ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 6788888889888886532 11111222 234455554443
Q ss_pred ----CCCEEEEEeCC-eEEEEECCCCCC----cceEE--EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003840 690 ----SGELLASVSED-SVRVWTVGSGSE----GECVH--ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 753 (792)
Q Consensus 690 ----dg~~Las~s~d-~I~IwDl~s~~~----~~~i~--~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~ 753 (792)
++..|++.+.. ..+...+..... ..-+. .+....+.+..+.+..+...|+..+..|.+.-+.+.
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS 315 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence 34567777776 777777643211 11122 222223455555444555667777777766555543
No 372
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=84.39 E-value=41 Score=34.86 Aligned_cols=189 Identities=11% Similarity=0.051 Sum_probs=102.7
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCC------ceeE--EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-
Q 003840 563 SPSMPRLATSSFDKTVRVWDADNPG------YSLR--TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT- 633 (792)
Q Consensus 563 spdg~~Lasgs~Dg~V~IWdl~s~~------~~i~--~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~- 633 (792)
-++..++++.+.+|.|+-..+..-. .-+. .+. ..+.+..+........++ ..+..|.++-+....-...
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll-~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLF-MISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCC--
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEE-EEECCCeEEEEEHHHCCCCC
Confidence 3466688999999999988765311 0111 122 223444444444434444 5667888777765421111
Q ss_pred -----------EEeeC--CeeEEEEec---CCCEEEEEEcCCeEEEEECCCC-------eEEEEecCCCCCeEEEEEcCC
Q 003840 634 -----------RVFKG--GTAQMRFQP---HLGRYLAAAAENVVSILDAETQ-------ACRLSLQGHTKPIDSVCWDPS 690 (792)
Q Consensus 634 -----------~~~~~--~~~~v~~sp---~~~~lla~s~dg~I~i~D~~t~-------~~~~~l~~h~~~V~sv~~spd 690 (792)
-.+.. .+..+.... ...+++.++..|.++...+... .....+.. .+.+..+....+
T Consensus 83 r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~ 161 (312)
T 1suu_A 83 RASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFK 161 (312)
T ss_dssp -----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECT
T ss_pred ccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCC
Confidence 01221 122222222 4577899999999998877432 22223333 455665555544
Q ss_pred CCEEEEEeCC-eEEEEECCCC----CCcceEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 691 GELLASVSED-SVRVWTVGSG----SEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 691 g~~Las~s~d-~I~IwDl~s~----~~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
+..|+..+.+ .+..+.+..- ....-+..+.- .+..+..+....++..|++.+..|.++.+++..
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 5555555555 7777776431 11112222222 244566666656677899999999999888754
No 373
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=82.66 E-value=78 Score=36.93 Aligned_cols=178 Identities=10% Similarity=0.034 Sum_probs=95.8
Q ss_pred EcCCCCeEEEEEeCCC----cEEEEEcCCCeeEEE-eeCCe----------eEEEEecCCCEEEEEEc-----------C
Q 003840 605 FHPNKDDLICSCDGDG----EIRYWSINNGSCTRV-FKGGT----------AQMRFQPHLGRYLAAAA-----------E 658 (792)
Q Consensus 605 fspd~~~ll~sgs~Dg----~I~iwdl~~~~~~~~-~~~~~----------~~v~~sp~~~~lla~s~-----------d 658 (792)
++|+++.++++-+..| .|+++|+.+++.+.. |.... ..++|. +.+.++++.. .
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCCC
Confidence 7888888887776655 699999999987642 22111 334787 4445554421 2
Q ss_pred CeEEEEECCCC----eEEEEecCCCCCeEEEEEcCCCC-----EEEEEeCC----eEEEEECCCCCCcceEEEeecCCCc
Q 003840 659 NVVSILDAETQ----ACRLSLQGHTKPIDSVCWDPSGE-----LLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 725 (792)
Q Consensus 659 g~I~i~D~~t~----~~~~~l~~h~~~V~sv~~spdg~-----~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~ 725 (792)
..|+.|.+-+. ..++.-... ....++..+.+++ .+++.+.+ .+++.|..... ..+..+......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKE-YIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKN--LKLQKINMPSDA 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTT-SCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSS--CEEEECCSCTTC
T ss_pred CEEEEEECCCChHHCeEEeccCCC-ceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCC--CcceEeecCCcc
Confidence 46888877653 334433322 2233455566766 24444433 45666654321 122222222211
Q ss_pred eEEEEEeCCCCEEEEE----------EcCCeEEEEECCCC--------cEEEEc--ccCCCeEEEEEeCCCCEEEEEeCC
Q 003840 726 FHSCVFHPTYPSLLVI----------GCYQSLELWNMSEN--------KTMTLT--AHEGLIAALAVSTETGYVASASHD 785 (792)
Q Consensus 726 i~si~fspdg~~L~sg----------s~dg~I~IwDl~~~--------~~~~~~--~h~~~V~sl~fspdg~~LaSgs~D 785 (792)
.+..+.++.+++.. ...+.|.++|+.+. ....+. .....|..+.|..+ .++++...+
T Consensus 293 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~ 369 (711)
T 4hvt_A 293 --TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDN 369 (711)
T ss_dssp --EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEET
T ss_pred --eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEEC
Confidence 12344455444432 13567999998763 222222 33446778888765 577777777
Q ss_pred CcEE
Q 003840 786 KFVK 789 (792)
Q Consensus 786 G~I~ 789 (792)
+.-+
T Consensus 370 ~~~~ 373 (711)
T 4hvt_A 370 VVAK 373 (711)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 6533
No 374
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=82.19 E-value=85 Score=36.86 Aligned_cols=145 Identities=12% Similarity=0.124 Sum_probs=71.0
Q ss_pred CCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCceeEEecc------------cCCCeEEEEEcCCC-CeEEEEEeC
Q 003840 553 HSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTFMG------------HSASVMSLDFHPNK-DDLICSCDG 618 (792)
Q Consensus 553 h~~~V~~i~fspdg-~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~------------h~~~V~sl~fspd~-~~ll~sgs~ 618 (792)
-.+.|.+|+++|.+ ..++++...|.|.. ....++.-..+.. ....|.+|+++|.. +.+++.++.
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~--S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~ 96 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYR--WNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGD 96 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEE--EETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECS
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEE--ECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecc
Confidence 45689999999965 46667766665443 3333444333322 12458999999854 334433321
Q ss_pred ----CCcEEEE-EcCCCeeEEEeeC----------Ce--eEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecC---
Q 003840 619 ----DGEIRYW-SINNGSCTRVFKG----------GT--AQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQG--- 677 (792)
Q Consensus 619 ----Dg~I~iw-dl~~~~~~~~~~~----------~~--~~v~~sp~~-~~lla~s~dg~I~i~D~~t~~~~~~l~~--- 677 (792)
.....|| ....++.-..+.. .. ..+.+.|.. +.+++++.++.|.. ..+.++.-..+..
T Consensus 97 ~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW~~~~~~~~ 175 (763)
T 3a0f_A 97 YVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTWSRMNQLPD 175 (763)
T ss_dssp CTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSCEECTTSCC
T ss_pred cccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCccccccCcc
Confidence 1113333 3333432222211 11 257787764 45555555443332 2222222112211
Q ss_pred ---CCCCeEEEEEcCCC-CEEEEEeCC
Q 003840 678 ---HTKPIDSVCWDPSG-ELLASVSED 700 (792)
Q Consensus 678 ---h~~~V~sv~~spdg-~~Las~s~d 700 (792)
....+..|+++|.. ..|+.+..+
T Consensus 176 ~~~~~~~~~~i~~~p~~~~~~~~~~~~ 202 (763)
T 3a0f_A 176 SSTYGIGIISVIFDPKNVGTAYVASHA 202 (763)
T ss_dssp CSCTTTCEEEEEECSSSTTCEEEEESS
T ss_pred cCCCccceEEEEECCCCCCEEEEEEeC
Confidence 11347788888743 334444433
No 375
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=81.69 E-value=52 Score=34.01 Aligned_cols=222 Identities=12% Similarity=0.047 Sum_probs=110.1
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCC--------ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-------
Q 003840 565 SMPRLATSSFDKTVRVWDADNPG--------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN------- 629 (792)
Q Consensus 565 dg~~Lasgs~Dg~V~IWdl~s~~--------~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~------- 629 (792)
+..++++.+.+|.|+--.+.+-. .....+.. .+.+..+........++ ..+..|.++-+....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll-~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHIL-CFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEE-EEECCCEEEEEEhhHCcCCCCC
Confidence 45678889999999877665310 01111222 23343443333334444 455677766665421
Q ss_pred --CeeEE---EeeCC--eeEEEEe---cCCCEEEEEEcCCeEEEEECCC-------CeEEEEecCCCCCeEEEEEcCCCC
Q 003840 630 --GSCTR---VFKGG--TAQMRFQ---PHLGRYLAAAAENVVSILDAET-------QACRLSLQGHTKPIDSVCWDPSGE 692 (792)
Q Consensus 630 --~~~~~---~~~~~--~~~v~~s---p~~~~lla~s~dg~I~i~D~~t-------~~~~~~l~~h~~~V~sv~~spdg~ 692 (792)
|..+. .+... +..+... .++.+++.++..|.++...+.. +.....+..+ +.+..+....+..
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence 22111 12222 2222221 2456789999999999887642 2222233333 4555554444444
Q ss_pred EEEEEe-CCeEEEEECCCC----CCcceEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--------EE
Q 003840 693 LLASVS-EDSVRVWTVGSG----SEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--------TM 758 (792)
Q Consensus 693 ~Las~s-~d~I~IwDl~s~----~~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~--------~~ 758 (792)
.|+..+ .+.+..++...- ....-+..+.- .+..|.++....++..|++.+..|.++-.++.... ..
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~ 238 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 238 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence 444444 446666665322 11111221111 23456666555566789999999988888764321 11
Q ss_pred --EEcccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003840 759 --TLTAHEGLIAALAVSTETGYVASASHDKFVK 789 (792)
Q Consensus 759 --~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~ 789 (792)
.+..-.+.+..+....+..-|+..+.+|.+.
T Consensus 239 ~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~i 271 (307)
T 1zi0_A 239 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV 271 (307)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEESSCCEE
T ss_pred eeEecCCCCeEEEEEEeCCCceEEEEcCCCcEE
Confidence 2222335555554444445455566666653
No 376
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=79.22 E-value=62 Score=33.40 Aligned_cols=229 Identities=8% Similarity=0.042 Sum_probs=120.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeE---------EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC---CCCC---
Q 003840 523 DGKLLATGGHDKKAVLWHTDTLKSKT---------NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA---DNPG--- 587 (792)
Q Consensus 523 dg~~Lasgs~Dg~I~vWdl~t~~~~~---------~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl---~s~~--- 587 (792)
+..++++.+.+|.|+--.+.+.+... .++. .+.+..+........|+..+..|.++-+.. ...+
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 45678888999999887776543221 1222 233444444445557777777887665544 3211
Q ss_pred --ceeE---EecccCCCeEEEEEcC--CCCeEEEEEeCCCcEEEEEcCCCe-------eEEEeeC--CeeEEEEecCCCE
Q 003840 588 --YSLR---TFMGHSASVMSLDFHP--NKDDLICSCDGDGEIRYWSINNGS-------CTRVFKG--GTAQMRFQPHLGR 651 (792)
Q Consensus 588 --~~i~---~~~~h~~~V~sl~fsp--d~~~ll~sgs~Dg~I~iwdl~~~~-------~~~~~~~--~~~~v~~sp~~~~ 651 (792)
..+. .+ .....|.++...+ +...+++..+.+|.++...+.... ....++. ....+........
T Consensus 81 ~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 81 RGRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE 159 (307)
T ss_dssp CCEEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCE
T ss_pred CCeEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCE
Confidence 1111 12 2334566554422 123345578889999999875321 1111222 2233334445568
Q ss_pred EEEEEcCCeEEEEECCC---------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC---C---cce
Q 003840 652 YLAAAAENVVSILDAET---------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS---E---GEC 715 (792)
Q Consensus 652 lla~s~dg~I~i~D~~t---------~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~---~---~~~ 715 (792)
++..+.+|.+..++... +.....+. ....|.++....++..|++.+.. .++..++.... . ...
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~ 238 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 238 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence 88999999888887642 11112222 23456666555555667777766 77777764321 1 111
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 716 i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
...+....+.+..+....+...|+..+.+|.+.-+++..
T Consensus 239 ~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 239 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 112222334555544444456677777778776666654
No 377
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=78.09 E-value=75 Score=33.74 Aligned_cols=222 Identities=11% Similarity=0.110 Sum_probs=113.6
Q ss_pred EEEEEeCCCeEEEEECCCC--------c---eeEEecc-CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-----
Q 003840 526 LLATGGHDKKAVLWHTDTL--------K---SKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----- 588 (792)
Q Consensus 526 ~Lasgs~Dg~I~vWdl~t~--------~---~~~~l~~-h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~----- 588 (792)
..+.-..||.|+.|-.... . ....+.. ....+..++++......+.-..||.|+.|-....+.
T Consensus 64 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~ 143 (389)
T 3kci_A 64 TLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN 143 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSS
T ss_pred eEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCC
Confidence 5555567888888854321 1 1111221 233456677777677777788899999996543111
Q ss_pred -----eeEEeccc-CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---------e-E-EEee----CCeeEEEEec
Q 003840 589 -----SLRTFMGH-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---------C-T-RVFK----GGTAQMRFQP 647 (792)
Q Consensus 589 -----~i~~~~~h-~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~---------~-~-~~~~----~~~~~v~~sp 647 (792)
....+... ...|..|+... ...+....||.|+.|-....- . . ..+. ..+..++...
T Consensus 144 ~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~ 220 (389)
T 3kci_A 144 RSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS 220 (389)
T ss_dssp CCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC
T ss_pred CccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC
Confidence 11122221 22566666542 233355679999999754310 0 0 1111 1223333333
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-----------eEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC---
Q 003840 648 HLGRYLAAAAENVVSILDAETQ-----------ACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS--- 711 (792)
Q Consensus 648 ~~~~lla~s~dg~I~i~D~~t~-----------~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~--- 711 (792)
.....++...+|.|+.|-.... .....+.. ....|..|+.-. .+.++...+ .|+.|-.....
T Consensus 221 g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~v~~wG~n~~GqLG 298 (389)
T 3kci_A 221 GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSGAVYTWGKGDYHRLG 298 (389)
T ss_dssp SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTSCEEEEECCGGGTTC
T ss_pred CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC--CEEEEEeCCCeEEEEeCCCCCCCC
Confidence 3367778888999999965321 11122221 122455555432 333333445 88888654310
Q ss_pred ---Cc--ceEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 712 ---EG--ECVHELS-CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 712 ---~~--~~i~~~~-~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
.. .....+. .....|..++. ...+.++...+|.|+.|-...
T Consensus 299 ~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 299 HGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp SSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECCT
T ss_pred CCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCC
Confidence 00 0111111 12234554443 344567778889999997654
No 378
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.02 E-value=78 Score=38.31 Aligned_cols=38 Identities=11% Similarity=0.328 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee
Q 003840 599 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 637 (792)
Q Consensus 599 ~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~ 637 (792)
.|.+++..++.. ++++-+.|+++|+|++.++.++....
T Consensus 237 ~~~~~~~~~~~~-~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTT-EEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCc-EEEEEECCCEEEEEECCCCCeEeeec
Confidence 466777776654 55588899999999999999987653
No 379
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=76.29 E-value=70 Score=32.45 Aligned_cols=114 Identities=10% Similarity=0.065 Sum_probs=70.1
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc------eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003840 513 SKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 585 (792)
Q Consensus 513 ~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~------~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s 585 (792)
..|..+.... +..+++..+.+|.|+...+.... ....++. .+.+..+........|+..+.+|.++.++...
T Consensus 68 e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~e 146 (276)
T 3no0_A 68 EKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVRE 146 (276)
T ss_dssp CCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhh
Confidence 3455543321 56799999999999999876542 1222333 34566666666666888999999988887642
Q ss_pred --------CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC
Q 003840 586 --------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 629 (792)
Q Consensus 586 --------~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~ 629 (792)
.+.....+. ....|.++....++.. ++..+..|.++...+..
T Consensus 147 ip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~-ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 147 VPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPY-LLVITAKGRVKKISHEE 196 (276)
T ss_dssp SCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSE-EEEEETTSCEEEEEGGG
T ss_pred CCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCE-EEEEeCCCcEEEeEHHH
Confidence 111111222 2355666555544444 44777889999888754
No 380
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=74.33 E-value=1.4e+02 Score=34.99 Aligned_cols=147 Identities=12% Similarity=0.083 Sum_probs=75.1
Q ss_pred CCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEecc------------CCCCEEEEEECCC-CCeEEEEeCC-
Q 003840 511 STSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEE------------HSSLITDVRFSPS-MPRLATSSFD- 575 (792)
Q Consensus 511 H~~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t~~~~~~l~~------------h~~~V~~i~fspd-g~~Lasgs~D- 575 (792)
-.+.|.+|+++|.+ ..++++...|.|...+ +.++.-..+.. ....|.+|++.|. ...|+++..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45689999999965 5666777666665443 23333222221 2345899999983 3444443321
Q ss_pred ----CcEEEEeCCCCCceeEEeccc-------CC--CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----
Q 003840 576 ----KTVRVWDADNPGYSLRTFMGH-------SA--SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----- 637 (792)
Q Consensus 576 ----g~V~IWdl~s~~~~i~~~~~h-------~~--~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----- 637 (792)
....||.-...++....+... .+ ....|+++|.+...++++..++.|. .....++.-..+.
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~~~~~~ 176 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWSRMNQLPDS 176 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCEECTTSCCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCccccccCccc
Confidence 124555544444433332210 11 1246888886544555555444333 2222232211111
Q ss_pred ----CCeeEEEEecCC-CEEEEEEcCC
Q 003840 638 ----GGTAQMRFQPHL-GRYLAAAAEN 659 (792)
Q Consensus 638 ----~~~~~v~~sp~~-~~lla~s~dg 659 (792)
.....+.+.|.. +.++++..++
T Consensus 177 ~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 177 STYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCCccceEEEEECCCCCCEEEEEEeCC
Confidence 124456777754 4566666654
No 381
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=73.67 E-value=1e+02 Score=33.00 Aligned_cols=266 Identities=11% Similarity=0.081 Sum_probs=130.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------ceeEEecc-CCCCEEEEEECCCCCeEEEEeCC-CcEE
Q 003840 513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-----------KSKTNLEE-HSSLITDVRFSPSMPRLATSSFD-KTVR 579 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~-----------~~~~~l~~-h~~~V~~i~fspdg~~Lasgs~D-g~V~ 579 (792)
..|..|+.-.. +.+.-..||.|+.|-.... .....+.. ....|..|+.-.+ ..+....| +.|+
T Consensus 16 ~~v~~ia~G~~--hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v~ 91 (406)
T 4d9s_A 16 RKVLIISAGAS--HSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEVY 91 (406)
T ss_dssp CCEEEEEECSS--EEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEEE
T ss_pred cceEEEecCCC--eEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEEE
Confidence 34665555433 5555567888888854321 11111221 2345777776533 33333444 5899
Q ss_pred EEeCCCCCc--------e--eEEecc-cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe----------eE-EEee
Q 003840 580 VWDADNPGY--------S--LRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS----------CT-RVFK 637 (792)
Q Consensus 580 IWdl~s~~~--------~--i~~~~~-h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~----------~~-~~~~ 637 (792)
.|-....+. . ...+.. ....|..|+... ...+.-..||.|+.|-.+..- .. ..+.
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~---~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGD---SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEECh---hheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 996542111 0 111111 223577776542 233455679999999765321 01 1111
Q ss_pred --CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----------eE-EEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eE
Q 003840 638 --GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ----------AC-RLSLQG-HTKPIDSVCWDPSGELLASVSED-SV 702 (792)
Q Consensus 638 --~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~----------~~-~~~l~~-h~~~V~sv~~spdg~~Las~s~d-~I 702 (792)
.......+.....+.++...+|.|+.|-.... .. ...+.. ....|..|+.. ..+.+....+ .|
T Consensus 169 ~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~v 246 (406)
T 4d9s_A 169 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGAL 246 (406)
T ss_dssp GGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCCE
T ss_pred ccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCCE
Confidence 11233445555667788888999999964321 11 111111 12345555543 2333334444 78
Q ss_pred EEEECCCCCC------c-c-eEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC---------c---EEEEc
Q 003840 703 RVWTVGSGSE------G-E-CVHELS-CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN---------K---TMTLT 761 (792)
Q Consensus 703 ~IwDl~s~~~------~-~-~i~~~~-~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~---------~---~~~~~ 761 (792)
+.|-...... . . ....+. .....|..++. -..+.++...+|.|+.|-.... . +..+.
T Consensus 247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 324 (406)
T 4d9s_A 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVR 324 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEEC
T ss_pred EEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEe
Confidence 8886543211 0 0 111111 11223444433 3456667778889999965431 0 11111
Q ss_pred -ccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 762 -AHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 762 -~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
.....|..|+.. ..+.+....||.|+.|
T Consensus 325 ~~~~~~v~~va~G--~~hs~alt~~G~v~~w 353 (406)
T 4d9s_A 325 FPDDQKVVQVSCG--WRHTLAVTERNNVFAW 353 (406)
T ss_dssp CGGGCCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred ccCCCcEEEEEeC--CCeEEEEeCCCCEEEe
Confidence 123356666543 2344445678888877
No 382
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=71.95 E-value=1.2e+02 Score=33.16 Aligned_cols=253 Identities=10% Similarity=0.076 Sum_probs=0.0
Q ss_pred CCCeEEEE-----------------ECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec
Q 003840 532 HDKKAVLW-----------------HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 594 (792)
Q Consensus 532 ~Dg~I~vW-----------------dl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~ 594 (792)
.++.|+.| +......+..+......|..|+.-.. ..++-..||.|+.|=....+..-....
T Consensus 27 ~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~--Ht~alt~~G~v~~wG~n~~GqLG~~~~ 104 (473)
T 3of7_A 27 QPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGM--HTLALDEESNVWSWGCNDVGALGRDTS 104 (473)
T ss_dssp SCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSS--EEEEEETTCCEEEEECCTTSTTCSCCC
T ss_pred CCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCC--eEEEEecCCeEEEeECCCCCCCCCCCc
Q ss_pred cc----------------------------------------CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc-------
Q 003840 595 GH----------------------------------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSI------- 627 (792)
Q Consensus 595 ~h----------------------------------------~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl------- 627 (792)
.. ...|..|+.. ....+.-..||.|+.|-.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G---~~hs~alt~~G~vy~wG~n~~~~Gq 181 (473)
T 3of7_A 105 NAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAAT---DNMSCALFSNGEVYAWGTFRCNEGI 181 (473)
T ss_dssp ---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEEC---SSEEEEEETTSCEEEEECEEETTEE
T ss_pred ccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEcc---CCEEEEEeCCCeEEEeeCCcCCCCc
Q ss_pred --------CCCeeEEEeeCCee--EEEEecCCCEEEEEEcCCeEEEEECCCC-----------------------eEEEE
Q 003840 628 --------NNGSCTRVFKGGTA--QMRFQPHLGRYLAAAAENVVSILDAETQ-----------------------ACRLS 674 (792)
Q Consensus 628 --------~~~~~~~~~~~~~~--~v~~sp~~~~lla~s~dg~I~i~D~~t~-----------------------~~~~~ 674 (792)
........+..... .+.+.......++...+|.|+.|-.... ..+..
T Consensus 182 LG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~ 261 (473)
T 3of7_A 182 LGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKY 261 (473)
T ss_dssp EESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEE
T ss_pred cCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEE
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003840 675 LQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 752 (792)
Q Consensus 675 l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl 752 (792)
+.. +.-.++++..+|++++.|... .+-+-+........................+.....+.++...+|.|+.|-.
T Consensus 262 Ia~--G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~ 339 (473)
T 3of7_A 262 IAS--GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGR 339 (473)
T ss_dssp EEE--CSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred Eec--CCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEEC
Q ss_pred ----------------------CCCcEEEEcccCCCe-EEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 753 ----------------------SENKTMTLTAHEGLI-AALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 753 ----------------------~~~~~~~~~~h~~~V-~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
...........-..+ ....++.-....+....||.|+.|
T Consensus 340 n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~~G~vy~w 401 (473)
T 3of7_A 340 LDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSW 401 (473)
T ss_dssp CTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCCCccCCCccccccccccccCCceeeeccCcccCCCCceEEEEeCCCeEEEEeCCCcEEEe
No 383
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.87 E-value=31 Score=41.93 Aligned_cols=40 Identities=20% Similarity=0.154 Sum_probs=35.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE 551 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~ 551 (792)
...|.+++..++..+|++-+.|++++||++.++.++.+..
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 3467888888999999999999999999999999888754
No 384
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=68.38 E-value=1.3e+02 Score=32.02 Aligned_cols=225 Identities=11% Similarity=0.056 Sum_probs=115.8
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCC------C--CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC----
Q 003840 562 FSPSMPRLATSSFDKTVRVWDADN------P--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---- 629 (792)
Q Consensus 562 fspdg~~Lasgs~Dg~V~IWdl~s------~--~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~---- 629 (792)
+-++..++++.+.+|.|+--.+.. . +.....+. ....+..+........++ ..+..|.++.+....
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll-~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLL-TFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEE-EEETTSEEEEEEGGGSCBC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEE-EEeCCCeEEEEEHHHCcCC
Confidence 456778999999999999765431 1 12223333 345565555555545455 455677776665421
Q ss_pred -----CeeEE---EeeCC--eeEEEEe---cCCCEEEEEEcCCeEEEEECCC-------CeEEEEecCCCCCeEEEEEcC
Q 003840 630 -----GSCTR---VFKGG--TAQMRFQ---PHLGRYLAAAAENVVSILDAET-------QACRLSLQGHTKPIDSVCWDP 689 (792)
Q Consensus 630 -----~~~~~---~~~~~--~~~v~~s---p~~~~lla~s~dg~I~i~D~~t-------~~~~~~l~~h~~~V~sv~~sp 689 (792)
|..+. .+... +..+... ....+++.++..|.++...+.. +.....+.. ...+..+....
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~ 159 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD 159 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence 21111 12222 2222222 1346899999999999887543 222223332 34455554444
Q ss_pred CCCEEEEEeCC-eEEEEECCCC----CCcceEEEeec-CCCceEEEEEeC------------------------------
Q 003840 690 SGELLASVSED-SVRVWTVGSG----SEGECVHELSC-NGNKFHSCVFHP------------------------------ 733 (792)
Q Consensus 690 dg~~Las~s~d-~I~IwDl~s~----~~~~~i~~~~~-~~~~i~si~fsp------------------------------ 733 (792)
....|+..+.+ .+..|+...- ....-+..+.- ....|.++...+
T Consensus 160 ~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC----------------------------
T ss_pred CCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 44445555544 6555654321 11111111111 223444444433
Q ss_pred -----CCCEEEEEEcCCeEEEEECCCCcE--------E--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003840 734 -----TYPSLLVIGCYQSLELWNMSENKT--------M--TLTAHEGLIAALAVSTETGYVASASHDKFVK 789 (792)
Q Consensus 734 -----dg~~L~sgs~dg~I~IwDl~~~~~--------~--~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~ 789 (792)
++.+|++.+..|..+...+..... . .+....+.+..+.+..+..-|+..+..|.+.
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~i 310 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLV 310 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEE
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEE
Confidence 456899999999888887754322 1 2222334555554444444555556666543
No 385
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=65.16 E-value=1.5e+02 Score=31.65 Aligned_cols=229 Identities=10% Similarity=-0.018 Sum_probs=109.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------------eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003840 515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLK------------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~------------~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd 582 (792)
|..|+.. +.+.+.-..||.|+.|-....- .....-.....|..|+... ...++-..||.|+.|-
T Consensus 77 v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~--~hs~al~~~G~v~~wG 152 (423)
T 3mvd_K 77 AVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD--SHSACLLEDGRVFAWG 152 (423)
T ss_dssp EEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS--SEEEEEETTSCEEEEE
T ss_pred ceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc--CeEEEEeCCCeEEEEe
Confidence 5555543 3356666778888888543210 1111111234566666543 3555567899999997
Q ss_pred C--CCCCc---------eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--------------------
Q 003840 583 A--DNPGY---------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-------------------- 631 (792)
Q Consensus 583 l--~s~~~---------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-------------------- 631 (792)
. ...+. ...........|..|+... ...+.-..||.|+.|-....-
T Consensus 153 ~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 229 (423)
T 3mvd_K 153 SFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGA---DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRD 229 (423)
T ss_dssp CEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTT
T ss_pred CCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCC---CeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccc
Confidence 6 32111 1111112234566666543 233355679999999654211
Q ss_pred ---eEEE-eeCCeeEEEEecCCCEEEEE-EcCCeEEEEECCC-----------CeEEEEecCCCCCeEEEEEcCCCCEEE
Q 003840 632 ---CTRV-FKGGTAQMRFQPHLGRYLAA-AAENVVSILDAET-----------QACRLSLQGHTKPIDSVCWDPSGELLA 695 (792)
Q Consensus 632 ---~~~~-~~~~~~~v~~sp~~~~lla~-s~dg~I~i~D~~t-----------~~~~~~l~~h~~~V~sv~~spdg~~La 695 (792)
.... +........+.......++. ..++.|+.|-... .............|..|+.- ..+.+
T Consensus 230 ~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G--~~ht~ 307 (423)
T 3mvd_K 230 LLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGG--QHHTV 307 (423)
T ss_dssp TSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEEC--SSEEE
T ss_pred ccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcc--cCeEE
Confidence 0000 00111111111222333333 4688888885432 11111111113456655543 23333
Q ss_pred EEeCC-eEEEEECCCC------CCc---ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 696 SVSED-SVRVWTVGSG------SEG---ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 696 s~s~d-~I~IwDl~s~------~~~---~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
....+ .|+.|-.... ... .....+..-...|..++.. ..+.++...+|.|+.|-...
T Consensus 308 alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G--~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 308 ILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCG--EVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp EEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEE--TTEEEEEETTSCEEEEECCT
T ss_pred EEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcC--CCeEEEEcCCCCEEEECCCC
Confidence 44444 8888865321 111 1112222222255555554 34556668889999997644
No 386
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=62.55 E-value=1.5e+02 Score=30.76 Aligned_cols=223 Identities=13% Similarity=0.120 Sum_probs=113.4
Q ss_pred CCCCeEEEEeCCCcEEEEeCCC---CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC---------Ce
Q 003840 564 PSMPRLATSSFDKTVRVWDADN---PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---------GS 631 (792)
Q Consensus 564 pdg~~Lasgs~Dg~V~IWdl~s---~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~---------~~ 631 (792)
++..++++.+.+|.|+--.+.. .+.....+.. .+.+..+........++ ..+..|.++-+.... |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll-~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLL-LFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEE-EEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEE-EEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 5667889999999998776541 0111112222 23444444444444444 455678776665422 22
Q ss_pred eEE---EeeCC--eeEEEEec---CCCEEEEEEcCCeEEEEECCC--------CeEEEEecCCCCCeEEEEEcCCCCEEE
Q 003840 632 CTR---VFKGG--TAQMRFQP---HLGRYLAAAAENVVSILDAET--------QACRLSLQGHTKPIDSVCWDPSGELLA 695 (792)
Q Consensus 632 ~~~---~~~~~--~~~v~~sp---~~~~lla~s~dg~I~i~D~~t--------~~~~~~l~~h~~~V~sv~~spdg~~La 695 (792)
.+. .+... +..+.... ++.+++.++.+|.++...+.. +.....+... +.+..+........|+
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence 111 12222 22222222 256799999999999887642 2222233322 4555555544444455
Q ss_pred EEeCC-eEEEEECCCC----CCcceEEEeec-CCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCc--------EEEE
Q 003840 696 SVSED-SVRVWTVGSG----SEGECVHELSC-NGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENK--------TMTL 760 (792)
Q Consensus 696 s~s~d-~I~IwDl~s~----~~~~~i~~~~~-~~~~i~si~fspdg~-~L~sgs~dg~I~IwDl~~~~--------~~~~ 760 (792)
..+.+ .+..+....- ....-+..+.- .+..|.++...+++. .|++.+..|..+..++.... ...+
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~ 239 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECe
Confidence 55554 6666665321 11122222222 234466665544455 78899999988887775421 1111
Q ss_pred ---cccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003840 761 ---TAHEGLIAALAVSTETGYVASASHDKFVK 789 (792)
Q Consensus 761 ---~~h~~~V~sl~fspdg~~LaSgs~DG~I~ 789 (792)
......+..+....++..|+..+.+|.+.
T Consensus 240 ~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~i 271 (323)
T 1wp5_A 240 RELKANPHRISGFVVAQDSDTIYLQTEKSFIE 271 (323)
T ss_dssp CCCSSSCCCEEEEEEECTTCEEEEEETTSCEE
T ss_pred eecCCCCceEEEEEEeCCCCeEEEEeCCCeEE
Confidence 11222455443333344555666677654
No 387
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=54.66 E-value=2.2e+02 Score=30.22 Aligned_cols=225 Identities=10% Similarity=0.094 Sum_probs=113.0
Q ss_pred CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc------------eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003840 555 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY------------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 622 (792)
Q Consensus 555 ~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~------------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I 622 (792)
..|..|+... ...+.-..||.|+.|-....+. ....+ .....|..|+... ...+.-..||.|
T Consensus 59 ~~i~~va~G~--~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G~---~hs~alt~~G~v 132 (413)
T 1a12_A 59 EDVVQAEAGG--MHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAGD---SHTAALTDDGRV 132 (413)
T ss_dssp SCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEECS---SEEEEEETTSCE
T ss_pred CCeEEEEeCC--CeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecCC---CeEEEEcCCCcE
Confidence 5566666543 3555566889999996653211 01111 1234676666542 233455679999
Q ss_pred EEEEc--CC-Cee-----------EEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-e-----------------
Q 003840 623 RYWSI--NN-GSC-----------TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-A----------------- 670 (792)
Q Consensus 623 ~iwdl--~~-~~~-----------~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~-~----------------- 670 (792)
+.|-. +. +.+ ...+......+.+.....+.++...+|.|+.|-.... .
T Consensus 133 ~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~ 212 (413)
T 1a12_A 133 FLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGL 212 (413)
T ss_dssp EEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGH
T ss_pred EEeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccc
Confidence 99975 22 110 0111122233444555567778888999999965431 0
Q ss_pred -----EE-EEecC----CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC------cc--eEEEeec-CC--CceEE
Q 003840 671 -----CR-LSLQG----HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------GE--CVHELSC-NG--NKFHS 728 (792)
Q Consensus 671 -----~~-~~l~~----h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~------~~--~i~~~~~-~~--~~i~s 728 (792)
+. ..+.. ....|..|+...+ +.++...+ .|+.|-...... .. ....+.. .. ..|..
T Consensus 213 ~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~--hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ 290 (413)
T 1a12_A 213 ERLLVPKCVMLKSRGSRGHVRFQDAFCGAY--FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVG 290 (413)
T ss_dssp HHHHSCEECCCBCSSCCSBCCEEEEEEETT--EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEE
T ss_pred cccccCceEeeccccccCCccEEEEEeCCC--EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEE
Confidence 10 01100 1234666655432 33333344 888887653211 00 0111111 11 23444
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCC----------CcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 729 CVFHPTYPSLLVIGCYQSLELWNMSE----------NKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 729 i~fspdg~~L~sgs~dg~I~IwDl~~----------~~~~--~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
++. -..+.++...+|.|+.|-... .... ........|..|+... .+.+....||.|+.|
T Consensus 291 ia~--G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~--~hs~alt~~G~v~~w 361 (413)
T 1a12_A 291 FSG--GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGA--SVGYAVTKDGRVFAW 361 (413)
T ss_dssp EEE--CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECS--SEEEEEETTSCEEEE
T ss_pred Eec--ccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECc--ceEEEEeCCCCEEEe
Confidence 443 344666777889999996532 1111 2222223566666532 344445578888887
No 388
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=53.97 E-value=86 Score=35.69 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=40.5
Q ss_pred eEEEEecCCCEEEEEEcC------------CeEEEEECCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEE
Q 003840 641 AQMRFQPHLGRYLAAAAE------------NVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASV 697 (792)
Q Consensus 641 ~~v~~sp~~~~lla~s~d------------g~I~i~D~~t~~~~~~l~~h-~~~V~sv~~spdg~~Las~ 697 (792)
-.++|++.+..+++...+ +.+.+++..+++....+.+. ..+++.++|+||++.|++.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 348899988755554332 35677787888776666553 4679999999999988765
No 389
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=53.04 E-value=1.1e+02 Score=26.36 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=16.5
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEECCC
Q 003840 683 DSVCWDPSGELLASVSEDSVRVWTVGS 709 (792)
Q Consensus 683 ~sv~~spdg~~Las~s~d~I~IwDl~s 709 (792)
..+.+..+|++++....+.+ +|...+
T Consensus 59 ~~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECTTSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECCCCCE-EEECCC
Confidence 45677788887776443343 787654
No 390
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=51.60 E-value=3.4e+02 Score=31.51 Aligned_cols=34 Identities=12% Similarity=0.384 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee
Q 003840 682 IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 720 (792)
Q Consensus 682 V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~ 720 (792)
|.++.+ +..++++.+.| ++|+|+++++ .++....
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~---~lv~t~D 258 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSF---TLIQDYD 258 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTT---EEEEEEE
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCC---ceEEeec
Confidence 555544 47799999999 9999999887 4454443
No 391
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.64 E-value=4.3e+02 Score=32.42 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=29.6
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003840 642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 676 (792)
Q Consensus 642 ~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~ 676 (792)
+++..++..++++.+.|+.++||++.++.++.+..
T Consensus 242 s~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 242 SMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred EeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556777899999999999999999999988754
No 392
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=45.24 E-value=95 Score=31.09 Aligned_cols=68 Identities=9% Similarity=0.078 Sum_probs=41.8
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc------EE--EEcccCCCeEEEEEe-CCCCEEEEEeCCCcEEEe
Q 003840 723 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK------TM--TLTAHEGLIAALAVS-TETGYVASASHDKFVKLW 791 (792)
Q Consensus 723 ~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~------~~--~~~~h~~~V~sl~fs-pdg~~LaSgs~DG~I~IW 791 (792)
+..|..+....++.+|+.++..|.++...+.... .. .+.. .+.+..+... .++..|+..+.+|.+..|
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 3456665443466788999999999988774321 11 2322 2345555454 345577788888887654
No 393
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=44.68 E-value=3.1e+02 Score=29.02 Aligned_cols=192 Identities=15% Similarity=0.170 Sum_probs=95.5
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc----------eeEEecc-cCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003840 554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----------SLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEI 622 (792)
Q Consensus 554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~----------~i~~~~~-h~~~V~sl~fspd~~~ll~sgs~Dg~I 622 (792)
...|..|+.-. ...++-..||.|+.|=....+. ....+.. ....|..|+... .+.++....++.|
T Consensus 15 ~~~v~~ia~G~--~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~--~ht~al~~~gg~v 90 (406)
T 4d9s_A 15 PRKVLIISAGA--SHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA--DHTVAYSQSGMEV 90 (406)
T ss_dssp CCCEEEEEECS--SEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECS--SEEEEEETTTTEE
T ss_pred ccceEEEecCC--CeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCc--ceEEEEECCCCEE
Confidence 34566665533 3455556788888886543221 1111211 123577776543 3344333334589
Q ss_pred EEEEcCCC------e---eEE--Eee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----------e-EEEEecC-
Q 003840 623 RYWSINNG------S---CTR--VFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ----------A-CRLSLQG- 677 (792)
Q Consensus 623 ~iwdl~~~------~---~~~--~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~----------~-~~~~l~~- 677 (792)
+.|-.... . ... .+. .......+.....+.++...+|.|+.|-.... . ....+..
T Consensus 91 ~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 170 (406)
T 4d9s_A 91 YSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF 170 (406)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGG
T ss_pred EEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEeccc
Confidence 99965321 0 111 111 12233445555677888889999999975431 1 1112221
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC------c-ceE-EEee-cCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003840 678 HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------G-ECV-HELS-CNGNKFHSCVFHPTYPSLLVIGCYQSL 747 (792)
Q Consensus 678 h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~------~-~~i-~~~~-~~~~~i~si~fspdg~~L~sgs~dg~I 747 (792)
....|..|+.. ..+.++...+ .|+.|-...... . ... ..+. .....|..++. -..+.++...+|.|
T Consensus 171 ~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~--G~~ht~~l~~~G~v 246 (406)
T 4d9s_A 171 EGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC--GWRHTISVSYSGAL 246 (406)
T ss_dssp TTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE--CSSEEEEEETTCCE
T ss_pred CCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE--CCCcEEEEcCCCCE
Confidence 12346666543 3344444555 888886543211 0 111 1111 11233444443 34466777788899
Q ss_pred EEEECC
Q 003840 748 ELWNMS 753 (792)
Q Consensus 748 ~IwDl~ 753 (792)
+.|-..
T Consensus 247 ~~wG~n 252 (406)
T 4d9s_A 247 YTYGWS 252 (406)
T ss_dssp EEEECC
T ss_pred EEeeCC
Confidence 999654
No 394
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=44.52 E-value=57 Score=37.15 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=42.6
Q ss_pred CeEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCceeEEeccC-CCCEEEEEECCCCCeEEEE
Q 003840 514 KVICCHFSSDGKLLATGGHD------------KKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATS 572 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~D------------g~I~vWdl~t~~~~~~l~~h-~~~V~~i~fspdg~~Lasg 572 (792)
..--|+|+++|+++++-..+ ..+.+.+..+++....+.+. ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34668999999866654322 23566677778877766654 4679999999999887765
No 395
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.97 E-value=1.8e+02 Score=35.81 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=29.5
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 725 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 725 ~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
.+.+++..++..++++.+.|++++||++.++.++
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 3556677788899999999999999999999877
No 396
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=43.83 E-value=75 Score=35.95 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=43.5
Q ss_pred CCeEEEEEcCCCCEEEEEeC------------CCeEEEEECCCCceeEEeccC-CCCEEEEEECCCCCeEEEE
Q 003840 513 SKVICCHFSSDGKLLATGGH------------DKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATS 572 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~------------Dg~I~vWdl~t~~~~~~l~~h-~~~V~~i~fspdg~~Lasg 572 (792)
.....|+|+++|.+.++... ...|..++..+++....+... ...++.++|+||++.|+++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 44678999999987773321 125677777778876666543 4579999999999988766
No 397
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=43.49 E-value=4e+02 Score=29.98 Aligned_cols=228 Identities=12% Similarity=0.100 Sum_probs=112.7
Q ss_pred cCCCCeEEEEEcCCCC-EEEEEeCCCe----------------------------EEEEECCCCceeEEeccC--CCC--
Q 003840 510 ASTSKVICCHFSSDGK-LLATGGHDKK----------------------------AVLWHTDTLKSKTNLEEH--SSL-- 556 (792)
Q Consensus 510 ~H~~~V~~lafspdg~-~Lasgs~Dg~----------------------------I~vWdl~t~~~~~~l~~h--~~~-- 556 (792)
.|...+....|+-||+ -|++.+.+|+ |.|+|-.+|+.+.++.-. ...
T Consensus 176 a~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~ 255 (591)
T 2zux_A 176 AHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVS 255 (591)
T ss_dssp TTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGG
T ss_pred cccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCccc
Confidence 3666788888888886 5666666665 788888888877765421 111
Q ss_pred -------------EEEEEECC-CCCeEEEEe---CCCcEEEEeCCCCCceeEE--eccc-----------CCCeEEEEEc
Q 003840 557 -------------ITDVRFSP-SMPRLATSS---FDKTVRVWDADNPGYSLRT--FMGH-----------SASVMSLDFH 606 (792)
Q Consensus 557 -------------V~~i~fsp-dg~~Lasgs---~Dg~V~IWdl~s~~~~i~~--~~~h-----------~~~V~sl~fs 606 (792)
..++++.. +...++.+- ....|..||... ++.... +... ...+.-..+.
T Consensus 256 ~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~-~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVD 334 (591)
T 2zux_A 256 DWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRD-GKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVD 334 (591)
T ss_dssp GGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEET-TEEEEEEEEETTSTTCGGGSSCCCSCCEEECCS
T ss_pred ccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCC-CceEEEEEecCCCCCcccccccCCCCCeeEeCC
Confidence 23344322 112333332 123477888865 332222 2111 0233444455
Q ss_pred CCCCeEEEEEe----CCCcEEEEEcCCCeeEEEeeCCeeEEEEecCC--CEEEEEEcCC----eEEEEECCCCeEEEEec
Q 003840 607 PNKDDLICSCD----GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL--GRYLAAAAEN----VVSILDAETQACRLSLQ 676 (792)
Q Consensus 607 pd~~~ll~sgs----~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~--~~lla~s~dg----~I~i~D~~t~~~~~~l~ 676 (792)
-||..-|+.|+ .||++ +|....+. -.......|.|+. -.++.+.+++ ...++|.++++.+....
T Consensus 335 gDG~dEIv~Gs~~iD~dG~~-L~st~~gH-----GDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~ 408 (591)
T 2zux_A 335 GDGKDEIIFGSMAVDHDGKG-MYSTGLGH-----GDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVY 408 (591)
T ss_dssp SSSSCEEEETTEEECTTSCE-EEECSCCC-----CSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEEC
T ss_pred CCCCceEEEeeeEECCCCCE-eeeCCCCC-----CCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcC
Confidence 55555444332 34433 45543211 1112233456653 3566665541 45678999999998876
Q ss_pred CC--CCCeEEEEEcCCCC--EEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEE
Q 003840 677 GH--TKPIDSVCWDPSGE--LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWN 751 (792)
Q Consensus 677 ~h--~~~V~sv~~spdg~--~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-~L~sgs~dg~I~IwD 751 (792)
.. .+......|.|+.. -+.+ + -.+|+.... .+.... ....-..+-|.-|.. .|+- .+.|.-|+
T Consensus 409 ~~~d~Gr~~~~Didp~~pG~E~w~---~-~~l~~~~G~----~i~~~~-p~~~N~~i~WdGDl~relld---~~~i~k~~ 476 (591)
T 2zux_A 409 AGKDVGRGMAADIDPRYPGQEVWA---N-GSLYSAKGV----KIGSGV-PSSTNFGIWWDGDLLREQLD---SNRIDKWD 476 (591)
T ss_dssp CSSCCCCEEEECCCTTSSSCEEEE---T-TEEECTTSC----BCSSCC-CSCCSEEECCSSSSSCEEEE---TTEEEEEE
T ss_pred CCCCCCceeEEecCCCCCceEEEe---c-CceECCCCC----EecCCC-CCCcceeEEECCCCcHhhhC---CceEEecc
Confidence 43 33333444555422 2222 1 135554321 111110 011123456666653 3332 24788898
Q ss_pred CCCCc
Q 003840 752 MSENK 756 (792)
Q Consensus 752 l~~~~ 756 (792)
...++
T Consensus 477 ~~~~~ 481 (591)
T 2zux_A 477 YQNGV 481 (591)
T ss_dssp TTTTE
T ss_pred cCCCc
Confidence 87775
No 398
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=39.16 E-value=1.7e+02 Score=24.59 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=15.8
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEECCC
Q 003840 684 SVCWDPSGELLASVSEDSVRVWTVGS 709 (792)
Q Consensus 684 sv~~spdg~~Las~s~d~I~IwDl~s 709 (792)
.+.+..||++++....+ -.||...+
T Consensus 54 ~L~l~~dGnLvL~d~~~-~~vWss~t 78 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDSSG-RSLWASHS 78 (105)
T ss_dssp EEEECTTSCEEEECTTC-CEEEECCC
T ss_pred EEEEeCCccEEEECCCc-EEEEEecC
Confidence 47778888877654433 34676543
No 399
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=36.63 E-value=98 Score=35.04 Aligned_cols=59 Identities=5% Similarity=-0.025 Sum_probs=42.2
Q ss_pred CceEEEEEeCCCCEEEEEEc------------CCeEEEEECCCCcEEEEcc--cCCCeEEEEEeCCCCEEEEE
Q 003840 724 NKFHSCVFHPTYPSLLVIGC------------YQSLELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASA 782 (792)
Q Consensus 724 ~~i~si~fspdg~~L~sgs~------------dg~I~IwDl~~~~~~~~~~--h~~~V~sl~fspdg~~LaSg 782 (792)
.....|+|.++|.+.++... ...|+.++..++++..+.. ....++.++|+||++.|+++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 34678899999986664432 1267777887887765442 34578999999999988765
No 400
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=36.50 E-value=5e+02 Score=29.12 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=79.7
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEecc-------------------C-----C-CCEEEEEECCCCCeEEEEeC---CC
Q 003840 525 KLLATGGHDKKAVLWHTDTLKSKTNLEE-------------------H-----S-SLITDVRFSPSMPRLATSSF---DK 576 (792)
Q Consensus 525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-------------------h-----~-~~V~~i~fspdg~~Lasgs~---Dg 576 (792)
.+|++|+.||.++.+|.. ++++..+-. | . -.+.++.+...-+.++.++. ..
T Consensus 86 ~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG~ 164 (570)
T 3hx6_A 86 PRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGGK 164 (570)
T ss_dssp CEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSCS
T ss_pred cEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCCc
Confidence 478899999999999877 554433210 1 1 11333433222233444432 23
Q ss_pred cEEEEeCCCCC--ceeEEecc-------cCCCeEEEEEcCCCCeEEEEEeC------CCcEEEEEcCCCeeEEEeeCC--
Q 003840 577 TVRVWDADNPG--YSLRTFMG-------HSASVMSLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFKGG-- 639 (792)
Q Consensus 577 ~V~IWdl~s~~--~~i~~~~~-------h~~~V~sl~fspd~~~ll~sgs~------Dg~I~iwdl~~~~~~~~~~~~-- 639 (792)
.++..|+.++. ..+..+.. +.-.--.|....+++.+++.++. ...|+|.|+.++..++.+...
T Consensus 165 ~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~~ 244 (570)
T 3hx6_A 165 GLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTGR 244 (570)
T ss_dssp EEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECCS
T ss_pred EEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCCC
Confidence 46666766532 22223321 11111123333456666655543 457999999999998877521
Q ss_pred ------eeEEE-EecCC----CEEEEEEcCCeEEEEECCCC
Q 003840 640 ------TAQMR-FQPHL----GRYLAAAAENVVSILDAETQ 669 (792)
Q Consensus 640 ------~~~v~-~sp~~----~~lla~s~dg~I~i~D~~t~ 669 (792)
...+. +..++ ..++++...|.|.-+|+...
T Consensus 245 ~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~ 285 (570)
T 3hx6_A 245 TGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAG 285 (570)
T ss_dssp TTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCS
T ss_pred CccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCC
Confidence 22232 33332 46888888999999998764
No 401
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=35.76 E-value=3.4e+02 Score=26.91 Aligned_cols=140 Identities=9% Similarity=-0.052 Sum_probs=73.5
Q ss_pred EEEEEeCCCeEEEEECCCCce-eEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC------CCcee---EEecc
Q 003840 526 LLATGGHDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN------PGYSL---RTFMG 595 (792)
Q Consensus 526 ~Lasgs~Dg~I~vWdl~t~~~-~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s------~~~~i---~~~~~ 595 (792)
.+++.+.+|.|+--....... ...++.. +.+..+........|+..+..|.++-+.+.. .+..+ ..+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 455666777776555433211 1123333 3344444433445677777888766554432 12211 1111
Q ss_pred cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-------eeEEEeeC--CeeEEEEe-cCCCEEEEEEcCCeEEEEE
Q 003840 596 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------SCTRVFKG--GTAQMRFQ-PHLGRYLAAAAENVVSILD 665 (792)
Q Consensus 596 h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~-------~~~~~~~~--~~~~v~~s-p~~~~lla~s~dg~I~i~D 665 (792)
....|.++....++. .++.++..|.++...+... .....++. .+..+... ..+..++..+.+|.+..|+
T Consensus 82 ~~e~Iv~~~~~~~~~-~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQ-KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTC-EEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCC-EEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 235666664433434 4457889999999987542 22222322 22223333 3456788888888888887
Q ss_pred CCC
Q 003840 666 AET 668 (792)
Q Consensus 666 ~~t 668 (792)
...
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 643
No 402
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=32.88 E-value=53 Score=38.23 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=30.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 003840 513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE 552 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~ 552 (792)
..|.|+.+. ..+|++-+.|+++|+||++++.++.+..-
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 346665553 67999999999999999999998877654
No 403
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A*
Probab=31.57 E-value=5.6e+02 Score=28.19 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=11.8
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEE
Q 003840 641 AQMRFQPHLGRYLAAAA-ENVVSI 663 (792)
Q Consensus 641 ~~v~~sp~~~~lla~s~-dg~I~i 663 (792)
..++|....++++++.. +|.|.+
T Consensus 219 g~vAlks~~GkYL~~~g~~g~L~~ 242 (493)
T 3llp_A 219 GKVAFRDCEGRYLAPSGPSGTLKA 242 (493)
T ss_dssp -CEEEECTTSCBEEEETTTTEEEE
T ss_pred CEEEEEeCCCCEEeEECCCCeEEe
Confidence 34555444445555444 666665
No 404
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=26.77 E-value=2.9e+02 Score=23.42 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=12.0
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEEcCC
Q 003840 602 SLDFHPNKDDLICSCDGDGEIRYWSINN 629 (792)
Q Consensus 602 sl~fspd~~~ll~sgs~Dg~I~iwdl~~ 629 (792)
.+.+..+|+.++ . ..++.+ +|...+
T Consensus 60 ~l~l~~dGNLVl-~-d~~~~~-iW~S~t 84 (113)
T 3mez_B 60 FMRLGHSGELDI-T-DDRLNT-VFVSNT 84 (113)
T ss_dssp EEEECTTSCEEE-E-CTTSCE-EEECSC
T ss_pred EEEEeCCCcEEE-E-CCCCCE-EEECCC
Confidence 455666655333 2 234443 676544
No 405
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=26.76 E-value=6.4e+02 Score=27.32 Aligned_cols=97 Identities=20% Similarity=0.365 Sum_probs=49.7
Q ss_pred EEEEEeCCCcEEEEEcCCC--eeEEE---eeC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE--EE-EecCCC---
Q 003840 612 LICSCDGDGEIRYWSINNG--SCTRV---FKG-GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC--RL-SLQGHT--- 679 (792)
Q Consensus 612 ll~sgs~Dg~I~iwdl~~~--~~~~~---~~~-~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~--~~-~l~~h~--- 679 (792)
+++.. -+|.|++|.--.. +.+.. +.+ ............-++++...|.+....++ ++. .. .+....
T Consensus 111 lliVs-ptG~VryWesIs~~~~~~ei~~~L~~~E~vt~l~n~epaGfIlaTStgrl~~lsir-Gkp~l~~~~l~~~~G~l 188 (450)
T 1xks_A 111 VMVAT-REGSIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLIPE-SSGKIHQHILPQGQGML 188 (450)
T ss_dssp EEEEC-TTCEEEEESCTTCTTCCEEEECC----CCEEEEEEETTTEEEEEETTCCEEEEEEC-TTSCEEEEECTTCCCC-
T ss_pred EEEEc-CCccEEEccccCCCCceEEEEecCCCCceEEEEeecCCceEEEEeccceEEEEEec-CCceEEEEEecCCCccc
Confidence 45444 4999999974332 22221 222 22222233445567777777777666665 321 11 111111
Q ss_pred -----------------CC--eEEEEEcCCCCEEEEEeCCeEEEEECCCC
Q 003840 680 -----------------KP--IDSVCWDPSGELLASVSEDSVRVWTVGSG 710 (792)
Q Consensus 680 -----------------~~--V~sv~~spdg~~Las~s~d~I~IwDl~s~ 710 (792)
.. ..++.+...++.+++.+...+.+|++..+
T Consensus 189 ~gi~~~~sSl~G~~s~~~~ia~v~~~~~~g~r~v~ilT~~~lq~W~l~~~ 238 (450)
T 1xks_A 189 SGIGRKVSSLFGILSPSSDLTLSSVLWDRERSSFYSLTSSNISKWELDDS 238 (450)
T ss_dssp -----------------CCCCEEEEEEETTTTEEEEEESSEEEEEEECSS
T ss_pred ccccccccccccccCCCcceEEEEeccCCCcEEEEEEcCCceEEEEecCC
Confidence 11 12344556667777666668999999443
No 406
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=24.92 E-value=1.1e+02 Score=26.13 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=14.2
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEC
Q 003840 684 SVCWDPSGELLASVSEDSVRVWTV 707 (792)
Q Consensus 684 sv~~spdg~~Las~s~d~I~IwDl 707 (792)
.+.+..+|++++....+.+.+|..
T Consensus 53 ~l~l~~dGNLVl~~~~~~~~vW~S 76 (111)
T 3mez_A 53 TLRLNNRGQLEIHSANSNTPVWVY 76 (111)
T ss_dssp EEEECTTSCEEEECSSCSSCSEEE
T ss_pred EEEEcCCCcEEEEeCCCCEEEEEe
Confidence 456777888776544334446654
No 407
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=23.54 E-value=8.2e+02 Score=27.46 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=29.3
Q ss_pred CeEEEEe-cCCCCCeEEEEEcCCC--CEEEEEeCC-----eEEEEECCCCCCcceEEEe
Q 003840 669 QACRLSL-QGHTKPIDSVCWDPSG--ELLASVSED-----SVRVWTVGSGSEGECVHEL 719 (792)
Q Consensus 669 ~~~~~~l-~~h~~~V~sv~~spdg--~~Las~s~d-----~I~IwDl~s~~~~~~i~~~ 719 (792)
++.+... .+|...+....|.|+. .-++.+.++ ...+.|.+++ +.+...
T Consensus 352 G~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG---~vlw~~ 407 (591)
T 2zux_A 352 GKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATG---KILWGV 407 (591)
T ss_dssp SCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTC---CEEEEE
T ss_pred CCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCC---cEEEEc
Confidence 4444433 3688888888888874 455555553 4556787776 444443
No 408
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=20.65 E-value=9.2e+02 Score=26.97 Aligned_cols=144 Identities=14% Similarity=0.133 Sum_probs=80.6
Q ss_pred CCeEEEEEeCCCcEEEEEcCCCeeEEEee--------------------------CCee--EEEEecCCCEEEEEEc---
Q 003840 609 KDDLICSCDGDGEIRYWSINNGSCTRVFK--------------------------GGTA--QMRFQPHLGRYLAAAA--- 657 (792)
Q Consensus 609 ~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--------------------------~~~~--~v~~sp~~~~lla~s~--- 657 (792)
...+++.|..||.++.+|.. ++.+..|- +... .+.+...-+.+++++.
T Consensus 84 R~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~G 162 (570)
T 3hx6_A 84 RAPRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAG 162 (570)
T ss_dssp CCCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTS
T ss_pred CccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCC
Confidence 34577788999999998877 54332220 0011 1111111133555554
Q ss_pred CCeEEEEECCC---CeEEEEecCCC-------CCeEEEEEcCCCCEEEEEeC-------C-eEEEEECCCCCCcceEEEe
Q 003840 658 ENVVSILDAET---QACRLSLQGHT-------KPIDSVCWDPSGELLASVSE-------D-SVRVWTVGSGSEGECVHEL 719 (792)
Q Consensus 658 dg~I~i~D~~t---~~~~~~l~~h~-------~~V~sv~~spdg~~Las~s~-------d-~I~IwDl~s~~~~~~i~~~ 719 (792)
...++..|+.+ .+.+.++.... -.--.|....++++++..+. . .|+|+|+.++. .+..+
T Consensus 163 G~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~---li~~i 239 (570)
T 3hx6_A 163 GKGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGA---ITRKL 239 (570)
T ss_dssp CSEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCC---EEEEE
T ss_pred CcEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCc---eEEEE
Confidence 34788888876 46666665211 11112344456775544332 2 79999999874 44444
Q ss_pred ecCC-----CceEEEEE-eCCC----CEEEEEEcCCeEEEEECCCCc
Q 003840 720 SCNG-----NKFHSCVF-HPTY----PSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 720 ~~~~-----~~i~si~f-spdg----~~L~sgs~dg~I~IwDl~~~~ 756 (792)
.... ..+..++. ..++ .+++++...|.|+-+|+....
T Consensus 240 ~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 240 EVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGK 286 (570)
T ss_dssp EECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSS
T ss_pred ecCCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCC
Confidence 3221 23444433 3332 579999999999999997643
No 409
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=20.55 E-value=7.4e+02 Score=25.86 Aligned_cols=228 Identities=12% Similarity=0.032 Sum_probs=114.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------------eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEE
Q 003840 513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-------------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~-------------~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~ 579 (792)
..|..|+...+ +.+.-..||.|+.|-..... ....+ .-...|..|+... ...++-..||.|+
T Consensus 59 ~~i~~va~G~~--hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G~--~hs~alt~~G~v~ 133 (413)
T 1a12_A 59 EDVVQAEAGGM--HTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAGD--SHTAALTDDGRVF 133 (413)
T ss_dssp SCEEEEEECSS--EEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEECS--SEEEEEETTSCEE
T ss_pred CCeEEEEeCCC--eEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecCC--CeEEEEcCCCcEE
Confidence 45666665433 45555678888888653210 01111 1133566666543 3555667889999
Q ss_pred EEeC--CCCCc---------e--eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-------------
Q 003840 580 VWDA--DNPGY---------S--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT------------- 633 (792)
Q Consensus 580 IWdl--~s~~~---------~--i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~------------- 633 (792)
.|-. ...+. . ...+ .....|..|+.-. ...+.-..||.|+.|-....-.+
T Consensus 134 ~wG~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~ 209 (413)
T 1a12_A 134 LWGSFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASGN---DHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGR 209 (413)
T ss_dssp EEECEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGG
T ss_pred EeeCCcCCCCccCcCCccccccCCEEe-cCCCCEEEEEecC---ceEEEEcCCCCEEEeeCCCCCccCCCcccccccccc
Confidence 9975 22110 0 1111 2234566666543 23335567999999976532100
Q ss_pred ---------E--Eee-----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----------eEEEEecCC---CCCeE
Q 003840 634 ---------R--VFK-----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-----------ACRLSLQGH---TKPID 683 (792)
Q Consensus 634 ---------~--~~~-----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~-----------~~~~~l~~h---~~~V~ 683 (792)
. .+. .......+.....+.++...+|.|+.|-.... .....+... ...|.
T Consensus 210 ~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~ 289 (413)
T 1a12_A 210 QGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV 289 (413)
T ss_dssp GGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEE
T ss_pred ccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEE
Confidence 0 010 11222333344456677778999999976431 111112211 13366
Q ss_pred EEEEcCCCCEEEEEeCC-eEEEEECCCCC------Ccc--e-EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003840 684 SVCWDPSGELLASVSED-SVRVWTVGSGS------EGE--C-VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 753 (792)
Q Consensus 684 sv~~spdg~~Las~s~d-~I~IwDl~s~~------~~~--~-i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~ 753 (792)
.|+.- ..+.++...+ .|+.|-..... ... . ...+.. ...|..++. -..+.++...+|.|+.|-..
T Consensus 290 ~ia~G--~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~--G~~hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 290 GFSGG--QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVAC--GASVGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp EEEEC--SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEE--CSSEEEEEETTSCEEEEECC
T ss_pred EEecc--cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEE--CcceEEEEeCCCCEEEecCC
Confidence 55543 2333334444 88888654310 001 1 111111 124555544 34466777788999999654
Q ss_pred C
Q 003840 754 E 754 (792)
Q Consensus 754 ~ 754 (792)
.
T Consensus 365 ~ 365 (413)
T 1a12_A 365 T 365 (413)
T ss_dssp T
T ss_pred C
Confidence 3
Done!