BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003841
(792 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 394 bits (1011), Expect = e-109, Method: Compositional matrix adjust.
Identities = 210/494 (42%), Positives = 298/494 (60%), Gaps = 39/494 (7%)
Query: 25 VIPLVNKLQDIFAQLGSQSTIELPXXXXXXXXXXXXXXXLEALVGRDFLPRGNDICTRRP 84
+IPLVN+LQD F+ +G + ++LP LE VGRDFLPRG+ I TRRP
Sbjct: 6 LIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRP 65
Query: 85 LVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFS 144
LVLQL+ T EY EFLH GK+F DF E+R EI+A+TD+ G NKG+S I L+++S
Sbjct: 66 LVLQLVNATT--EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYS 123
Query: 145 PHVLDITLVDLP-----------------------------------VTPANSDLANSDA 169
PHVL++TLVDLP V+PANSDLANSDA
Sbjct: 124 PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 183
Query: 170 LQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNR 229
L++A DP G RTIG+ITKLD+MD GTDAR++L K++PLR GY+GVVNRSQ+DI +
Sbjct: 184 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKK 243
Query: 230 SIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVS 289
I AL AE KFF S P Y LADR G P L K LNQ L HI+ LPGL++++ S L+S
Sbjct: 244 DITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLS 303
Query: 290 VAKEHASYGEIT-ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIF 348
+ KE Y + A + LL ++ +++ F +EG +++ T ELSGGARI+ IF
Sbjct: 304 IEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIF 363
Query: 349 QSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQ 408
F L +++ E +I AI+NA + LF PD+ FE ++++Q+ ++ +P L+
Sbjct: 364 HERFPFELVKMEFDEKELRREISYAIKNAAAAATGLFTPDMAFETIVKKQVKKIREPCLK 423
Query: 409 CARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDY 468
C + EL+ C +LQ++P LR+ M+ ++ +RE ++ + +I++E+ Y
Sbjct: 424 CVDMVISELISTVRQC-TKKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAY 482
Query: 469 INTSHPNFIGGSKA 482
+NT+H +FIG + A
Sbjct: 483 MNTNHEDFIGFANA 496
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%)
Query: 618 EIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQE 677
++ + L+ SY IV K + D +PK +MH ++N+TK + + + LY +++E
Sbjct: 655 QVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQNTLMEE 714
Query: 678 PEEVAMKRKRTRDTLRVLQQAFRTLDEL 705
E A +R L++A + ++
Sbjct: 715 SAEQAQRRDEMLRMYHALKEALSIIGDI 742
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust.
Identities = 211/494 (42%), Positives = 298/494 (60%), Gaps = 39/494 (7%)
Query: 25 VIPLVNKLQDIFAQLGSQSTIELPXXXXXXXXXXXXXXXLEALVGRDFLPRGNDICTRRP 84
+IPLVN+LQD F+ +G + ++LP LE VGRDFLPRG+ I TRRP
Sbjct: 29 LIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRP 88
Query: 85 LVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFS 144
LVLQL+ + T EY EFLH GK+F DF E+R EI+A+TD+ G NKG+S I L+++S
Sbjct: 89 LVLQLVNSTT--EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYS 146
Query: 145 PHVLDITLVDLP-----------------------------------VTPANSDLANSDA 169
PHVL++TLVDLP V+PANSDLANSDA
Sbjct: 147 PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 206
Query: 170 LQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNR 229
L+IA DP G RTIG+ITKLD+MD GTDAR++L K++PLR GY+GVVNRSQ+DI +
Sbjct: 207 LKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKK 266
Query: 230 SIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVS 289
I AL AE KFF S P Y LADR G P L K LNQ L HI+ LPGL++++ S L+S
Sbjct: 267 DITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLS 326
Query: 290 VAKEHASYGEIT-ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIF 348
+ KE Y + A + LL ++ +++ F +EG +++ T ELSGGARI+ IF
Sbjct: 327 IEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIF 386
Query: 349 QSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQ 408
F L +++ E +I AI+N ++ LF PD+ FE +++Q+ +L +PS++
Sbjct: 387 HERFPFELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDLAFEATVKKQVQKLKEPSIK 446
Query: 409 CARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDY 468
C + EL C +LQ++P LR+ M+ ++ +RE ++ + +I++E+ Y
Sbjct: 447 CVDMVVSELTSTIRKC-SEKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAY 505
Query: 469 INTSHPNFIGGSKA 482
+NT+H +FIG + A
Sbjct: 506 MNTNHEDFIGFANA 519
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%)
Query: 618 EIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQE 677
++ + L+ SY IV K + D +PK +MH ++N+TK + + + LY +++E
Sbjct: 678 QVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQNTLMEE 737
Query: 678 PEEVAMKRKRTRDTLRVLQQAFRTLDEL 705
E A +R L++A + ++
Sbjct: 738 SAEQAQRRDEMLRMYHALKEALSIIGDI 765
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 293 bits (751), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 158/329 (48%), Positives = 200/329 (60%), Gaps = 37/329 (11%)
Query: 25 VIPLVNKLQDIFAQLGSQSTIELPXXXXXXXXXXXXXXXLEALVGRDFLPRGNDICTRRP 84
+IPLVN+LQD F+ +G + ++LP LE VGRDFLPRG+ I TRRP
Sbjct: 9 LIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRP 68
Query: 85 LVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFS 144
LVLQL+ T EY EFLH GK+F DF E+R EI+A+TD+ G NKG+S I L+++S
Sbjct: 69 LVLQLVNATT--EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYS 126
Query: 145 PHVLDITLVDLP-----------------------------------VTPANSDLANSDA 169
PHVL++TLVDLP V+PANSDLANSDA
Sbjct: 127 PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 186
Query: 170 LQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNR 229
L++A DP G RTIG+ITKLD+MD GTDAR++L K++PLR GY+GVVNRSQ+DI +
Sbjct: 187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKK 246
Query: 230 SIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVS 289
I AL AE KFF S P Y LADR G P L K LNQ L HI+ LPGL++++ S L+S
Sbjct: 247 DITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLS 306
Query: 290 VAKEHASYGEITESKAGQGALLLNILSKY 318
+ KE Y K G + + +L Y
Sbjct: 307 IEKEVEEYKNFRPDKHGTDSRVDEMLRMY 335
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 290 bits (741), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 157/329 (47%), Positives = 198/329 (60%), Gaps = 37/329 (11%)
Query: 25 VIPLVNKLQDIFAQLGSQSTIELPXXXXXXXXXXXXXXXLEALVGRDFLPRGNDICTRRP 84
+IPLVN+LQD F+ +G + ++LP LE VGRDFLPRG+ I TRRP
Sbjct: 9 LIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRP 68
Query: 85 LVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFS 144
LVLQL+ T EY EFLH GK+F DF E+R EI+A+TD+ G NKG+S I L+++S
Sbjct: 69 LVLQLVNATT--EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYS 126
Query: 145 PHVLDITLVDLP-----------------------------------VTPANSDLANSDA 169
PHVL++TLVDLP V+PANSDLANSDA
Sbjct: 127 PHVLNLTLVDLPGXTKVPVGDQPPDIEFQIRDXLXQFVTKENCLILAVSPANSDLANSDA 186
Query: 170 LQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNR 229
L++A DP G RTIG+ITKLD+ D GTDAR++L K++PLR GY+GVVNRSQ+DI +
Sbjct: 187 LKVAKEVDPQGQRTIGVITKLDLXDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKK 246
Query: 230 SIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVS 289
I AL AE KFF S P Y LADR G P L K LNQ L HI+ LPGL++++ S L+S
Sbjct: 247 DITAALAAERKFFLSHPSYRHLADRXGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLS 306
Query: 290 VAKEHASYGEITESKAGQGALLLNILSKY 318
+ KE Y K G + + L Y
Sbjct: 307 IEKEVEEYKNFRPDKHGTDSRVDEXLRXY 335
>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|B Chain B, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|C Chain C, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|D Chain D, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
Length = 319
Score = 283 bits (725), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 149/300 (49%), Positives = 188/300 (62%), Gaps = 37/300 (12%)
Query: 25 VIPLVNKLQDIFAQLGSQSTIELPXXXXXXXXXXXXXXXLEALVGRDFLPRGNDICTRRP 84
+IPLVN+LQD F+ LG +ELP LE VGRDFLPRG+ I TRRP
Sbjct: 22 LIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRP 81
Query: 85 LVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFS 144
LVLQL+ +K EY EFLH GK+F DF E+R EI+A+TD+ G NKG+S I L+++S
Sbjct: 82 LVLQLITSKA--EYAEFLHCKGKKFTDFDEVRLEIEAETDRVTGMNKGISSIPINLRVYS 139
Query: 145 PHVLDITLVDLP-----------------------------------VTPANSDLANSDA 169
PHVL++TL+DLP VTPAN+DLANSDA
Sbjct: 140 PHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVTPANTDLANSDA 199
Query: 170 LQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNR 229
L++A DP G RTIG+ITKLD+MD GTDAR++L K++PLR GYVGVVNRSQ+DI +
Sbjct: 200 LKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGVVNRSQKDIDGKK 259
Query: 230 SIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVS 289
IK A++AE KFF S P Y +ADR G P L K LNQ L HI+ LP ++++ L+S
Sbjct: 260 DIKAAMLAERKFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNFRNKLQGQLLS 319
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/298 (50%), Positives = 188/298 (63%), Gaps = 37/298 (12%)
Query: 25 VIPLVNKLQDIFAQLGSQSTIELPXXXXXXXXXXXXXXXLEALVGRDFLPRGNDICTRRP 84
+IPLVN+LQD F+ +G + ++LP LE VGRDFLPRG+ I TRRP
Sbjct: 4 LIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRP 63
Query: 85 LVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFS 144
LVLQL+ + T EY EFLH GK+F DF E+R EI+A+TD+ G NKG+S I L+++S
Sbjct: 64 LVLQLVNSTT--EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYS 121
Query: 145 PHVLDITLVDLP-----------------------------------VTPANSDLANSDA 169
PHVL++TLVDLP V+PANSDLANSDA
Sbjct: 122 PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181
Query: 170 LQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNR 229
L+IA DP G RTIG+ITKLD+MD GTDAR++L K++PLR GY+GVVNRSQ+DI +
Sbjct: 182 LKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKK 241
Query: 230 SIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSAL 287
I AL AE KFF S P Y LADR G P L K LNQ L HI+ LPGL++++ S L
Sbjct: 242 DITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL 299
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 280 bits (715), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 147/314 (46%), Positives = 197/314 (62%), Gaps = 42/314 (13%)
Query: 25 VIPLVNKLQDIFAQLGSQSTIELPXXXXXXXXXXXXXXXLEALVGRDFLPRGNDICTRRP 84
+IP++NKLQD+F LGS ++LP LE +VGRDFLPRG+ I TRRP
Sbjct: 3 LIPVINKLQDVFNTLGSDP-LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRP 61
Query: 85 LVLQLLQT------KTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQI 138
L+LQL +E+GEFLH P FYDFSEIR EI TD+ G NKG+S + I
Sbjct: 62 LILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPI 121
Query: 139 RLKIFSPHVLDITLVDLP-----------------------------------VTPANSD 163
LKI+SPHV+++TLVDLP VTPAN+D
Sbjct: 122 NLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181
Query: 164 LANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQE 223
LANSDALQ+A DP+G RTIG+ITKLD+MD+GTDA +L G+VIPL LG++GV+NRSQE
Sbjct: 182 LANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQE 241
Query: 224 DIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRI 283
DI+ +SI+++L +E +F++ P+Y +A+R G L+K LN++L+ HI+ LP LK ++
Sbjct: 242 DIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKV 301
Query: 284 SSALVSVAKEHASY 297
S L V E ++Y
Sbjct: 302 SKMLSDVQGELSTY 315
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 208 bits (529), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 179/322 (55%), Gaps = 48/322 (14%)
Query: 24 SVIPLVNKLQDIFAQLGSQSTIE--------LPXXXXXXXXXXXXXXXLEALVGRDFLPR 75
++I LVNK+Q LG LP LE++VG+DFLPR
Sbjct: 3 NLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPR 62
Query: 76 GNDICTRRPLVLQLLQTKTDE---EYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKG 132
G+ I TRRPLVLQL K D+ EY EFLHLP K+F DF+ +R+EIQ +TD+E G +K
Sbjct: 63 GSGIVTRRPLVLQL--QKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKA 120
Query: 133 VSDKQIRLKIFSPHVLDITLVDLP-----------------------------------V 157
+S I L I+SP+V+++TL+DLP +
Sbjct: 121 ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180
Query: 158 TPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 217
+PAN DLA SDA++I+ DP G RT G++TK+D+MD+GTDA +L G+ L+ +VGV
Sbjct: 181 SPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240
Query: 218 VNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILP 277
VNRSQ DI N + A E ++F + Y LA++ G LAK L++ L + IK+ +P
Sbjct: 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIP 300
Query: 278 GLKSRISSALVSVAKEHASYGE 299
G++S I+ ++ + E + G+
Sbjct: 301 GIQSLINKTVLELETELSRLGK 322
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 125/463 (26%), Positives = 211/463 (45%), Gaps = 64/463 (13%)
Query: 8 NTTAAQSQPSAVPLGG-------SVIPLVNKLQDIFAQLGSQSTIELPXXXXXXXXXXXX 60
+ T AQ P +V V P ++ L D LG + + LP
Sbjct: 25 DATVAQKNPGSVAENNLCSQYEEKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGK 83
Query: 61 XXXLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFY--------DF 112
LEAL G LPRG+ I TR PLVL+L + ++++ GK Y D
Sbjct: 84 SSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDKW------RGKVSYQDYEIEISDA 136
Query: 113 SEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLP---------------- 156
SE+ +EI + AG G+S + I L+I S V D+TL+DLP
Sbjct: 137 SEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 196
Query: 157 -------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 197
V P+N D+A ++AL +A DP+G RTIGI+TK D++D+GT
Sbjct: 197 KIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGT 256
Query: 198 DAR--NLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD-- 253
+ + +++ V L+ GY+ V R Q++I S+ +AL E+ FF + P + L +
Sbjct: 257 EDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEG 316
Query: 254 RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYG-EITESKAGQGALLL 312
+ VP LA+KL L+ HI LP L+++I + +E YG +I E + + L+
Sbjct: 317 KATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLI 376
Query: 313 NILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRT 372
+ ++ +++ +++++G+ E + ++ R+ + F + I+
Sbjct: 377 DKVNAFNQDITALMQGE-ETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQK 435
Query: 373 AIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYD 415
G + FV FE ++++QI L +P++ + D
Sbjct: 436 FENQYRGRELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTD 478
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 135 bits (341), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 123/458 (26%), Positives = 210/458 (45%), Gaps = 64/458 (13%)
Query: 6 ATNTTAAQSQPSAVPLGGSVIPLVNKLQDIFAQLGSQSTIELPXXXXXXXXXXXXXXXLE 65
A N +Q + P I L++ L+ LG + + LP LE
Sbjct: 12 AENNLCSQYEEKVRP----CIDLIDSLR----ALGVEQDLALPAIAVIGDQSSGKSSVLE 63
Query: 66 ALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFY--------DFSEIRR 117
AL G LPRG+ I TR PLVL+L + ++++ GK Y D SE+ +
Sbjct: 64 ALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDKW------RGKVSYQDYEIEISDASEVEK 116
Query: 118 EIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLP--------------------- 156
EI + AG G+S + I L+I S V D+TL+DLP
Sbjct: 117 EINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTL 176
Query: 157 --------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDAR-- 200
V P+N D+A ++AL +A DP+G RTIGI+TK D++D+GT+ +
Sbjct: 177 IKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVV 236
Query: 201 NLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVP 258
+++ V L+ GY+ V R Q++I S+ +AL E+ FF + P + L + + VP
Sbjct: 237 DVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVP 296
Query: 259 QLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYG-EITESKAGQGALLLNILSK 317
LA+KL L+ HI LP L+++I + +E YG +I E + + L++ ++
Sbjct: 297 CLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNA 356
Query: 318 YSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNA 377
+++ +++++G+ E + ++ R+ + F + I+ A
Sbjct: 357 FNQDITALMQGE-ETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQA 415
Query: 378 TGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYD 415
+ FV FE ++++QI L +P++ + D
Sbjct: 416 AAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTD 453
>pdb|1R8W|A Chain A, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R8W|B Chain B, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|A Chain A, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|B Chain B, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9E|A Chain A, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
pdb|1R9E|B Chain B, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
Length = 787
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 205 GKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRS 244
GKV LR+G+ G++N ++E + NRSI + +EKF S
Sbjct: 170 GKV--LRVGFNGIINEAKEQLEKNRSIDPDFIKKEKFLNS 207
>pdb|1L23|A Chain A, Enhanced Protein Thermostability From Site-Directed
Mutations That Decrease The Entropy Of Unfolding
Length = 164
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ A + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRAILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|176L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|176L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 168 DALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMF 227
+ L++ D +GY TIGI L + D ++A L K I GV+ + + + +F
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHTLKV-DGNSNAAKSELDKAIGRNTN--GVITKDEAEKLF 67
Query: 228 NRSIKDALVAEEKFFRSRPVYNGL 251
N+ + A+ + + +PVY+ L
Sbjct: 68 NQDVDAAVRGILRNAKLKPVYDSL 91
>pdb|1L21|A Chain A, Contributions Of Left-Handed Helical Residues To The
Structure And Stability Of Bacteriophage T4 Lysozyme
Length = 164
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 168 DALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMF 227
+ L++ D +GY TIGI L +A L K I G GV+ + + + +F
Sbjct: 11 EGLRLKIYKDTEGYYTIGI-GHLLTKSPSLNAAKSELDKAIGRNCG--GVITKDEAEKLF 67
Query: 228 NRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS-RIS 284
N+ + A+ + + +PVY+ L RC + + ++ + V L L+ R
Sbjct: 68 NQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWD 127
Query: 285 SALVSVAK 292
A V++AK
Sbjct: 128 EAAVNLAK 135
>pdb|1L72|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R ++A V++AK
Sbjct: 125 RWAAAAVNLAK 135
>pdb|167L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|167L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NTNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L37|A Chain A, Contributions Of Engineered Surface Salt Bridges To The
Stability Of T4 Lysozyme Determined By Directed
Mutagenesis
Length = 164
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V + L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFENSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L44|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLEMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L07|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L53|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L03|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|172L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L58|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L22|A Chain A, Contributions Of Left-Handed Helical Residues To The
Structure And Stability Of Bacteriophage T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQG 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1LYG|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+N+ + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NTNGVINKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL 251
+FN+ + A+ + + +PVY+ L
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSL 91
>pdb|1L18|A Chain A, Hydrophobic Stabilization In T4 Lysozyme Determined
Directly By Multiple Substitutions Of Ile 3
Length = 164
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L08|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|190L|A Chain A, A Helix Initiation Signal In T4 Lysozyme Identified By
Polyalanine Mutagenesis
Length = 164
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ G + + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRAC------AGAITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L60|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAAFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|3F9L|A Chain A, Evaulaution At Atomic Resolution Of The Role Of Strain In
Destabilizing The Temperature Sensitive T4 Lysozyme
Mutant Arg96-->his
Length = 164
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVAAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L15|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L10|A Chain A, Structural Studies Of Mutants Of The Lysozyme Of
Bacteriophage T4. The Temperature-Sensitive Mutant
Protein Thr157 (Right Arrow) Ile
Length = 164
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L01|A Chain A, Structural Studies Of Mutants Of The Lysozyme Of
Bacteriophage T4. The Temperature-Sensitive Mutant
Protein Thr157 (Right Arrow) Ile
Length = 164
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L11|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L02|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L17|A Chain A, Hydrophobic Stabilization In T4 Lysozyme Determined
Directly By Multiple Substitutions Of Ile 3
Length = 164
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|150L|A Chain A, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
pdb|150L|B Chain B, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
pdb|150L|C Chain C, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
pdb|150L|D Chain D, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
pdb|256L|A Chain A, Bacteriophage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|3FA0|A Chain A, Evaulaution At Atomic Resolution Of The Role Of Strain In
Destabilizing The Temperature Sensitive T4 Lysozyme
Mutant Arg96-->his
Length = 162
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1LYD|A Chain A, Crystal Structure Of T4-Lysozyme Generated From Synthetic
Coding Dna Expressed In Escherichia Coli
pdb|2LZM|A Chain A, Structure Of Bacteriophage T4 Lysozyme Refined At 1.7
Angstroms Resolution
pdb|3LZM|A Chain A, Structural Studies Of Mutants Of T4 Lysozyme That Alter
Hydrophobic Stabilization
pdb|4LZM|A Chain A, Comparison Of The Crystal Structure Of Bacteriophage T4
Lysozyme At Low, Medium, And High Ionic Strengths
pdb|5LZM|A Chain A, Comparison Of The Crystal Structure Of Bacteriophage T4
Lysozyme At Low, Medium, And High Ionic Strengths
pdb|6LZM|A Chain A, Comparison Of The Crystal Structure Of Bacteriophage T4
Lysozyme At Low, Medium, And High Ionic Strengths
pdb|7LZM|A Chain A, Comparison Of The Crystal Structure Of Bacteriophage T4
Lysozyme At Low, Medium, And High Ionic Strengths
Length = 164
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L09|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|149L|A Chain A, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1D9W|A Chain A, Bacteriophage T4 Lysozyme Mutant
Length = 164
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQD 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L12|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L20|A Chain A, Enhanced Protein Thermostability From Designed Mutations
That Interact With Alpha-helix Dipoles
Length = 164
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L04|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
pdb|1L05|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L47|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L38|A Chain A, Contributions Of Engineered Surface Salt Bridges To The
Stability Of T4 Lysozyme Determined By Directed
Mutagenesis
Length = 164
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQEK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L14|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L52|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L46|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L13|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|171L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ A + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSALDKAIGR------NTNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL 251
+FN+ + A+ + + +PVY+ L
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSL 91
>pdb|1L57|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTDSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|4EPI|A Chain A, The Crystal Structure Of Pesticin-T4 Lysozyme Hybrid
Stabilized By Engineered Disulfide Bonds
Length = 330
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 177 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTN------GVITKDEAE 230
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGL-KS 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L +
Sbjct: 231 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 290
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 291 RWDEAAVNLAK 301
>pdb|1L42|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
pdb|1L43|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLEIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L06|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L16|A Chain A, Structural Analysis Of The Temperature-Sensitive Mutant Of
Bacteriophage T4 Lysozyme, Glycine 156 (Right Arrow)
Aspartic Acid
Length = 164
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|152L|A Chain A, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
Length = 164
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDCEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NTNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1T6H|A Chain A, Crystal Structure T4 Lysozyme Incorporating An Unnatural
Amino Acid P-Iodo-L-Phenylalanine At Position 153
Length = 164
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L97|A Chain A, Structure Of A Hinge-Bending Bacteriophage T4 Lysozyme
Mutant, Ile3-> Pro
pdb|1L97|B Chain B, Structure Of A Hinge-Bending Bacteriophage T4 Lysozyme
Mutant, Ile3-> Pro
pdb|1L96|A Chain A, Structure Of A Hinge-bending Bacteriophage T4 Lysozyme
Mutant, Ile3-> Pro
Length = 164
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L98|A Chain A, Perturbation Of Trp 138 In T4 Lysozyme By Mutations At Gln
105 Used To Correlate Changes In Structure, Stability,
Solvation, And Spectroscopic Properties
Length = 164
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFEMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1PQK|A Chain A, Repacking Of The Core Of T4 Lysozyme By Automated Design
pdb|1PQK|B Chain B, Repacking Of The Core Of T4 Lysozyme By Automated Design
pdb|1PQK|C Chain C, Repacking Of The Core Of T4 Lysozyme By Automated Design
Length = 164
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NTNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL 251
+FN+ + A+ A + + +PVY+ L
Sbjct: 65 KLFNQDVDAAVRAVLRNAKLKPVYDSL 91
>pdb|1L19|A Chain A, Enhanced Protein Thermostability From Designed Mutations
That Interact With Alpha-helix Dipoles
Length = 164
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPDLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1C69|A Chain A, T4 Lysozyme Mutant C54tC97AL133A IN THE PRESENCE OF 8 ATM
Argon
pdb|1C6A|A Chain A, T4 Lysozyme Mutant C54tC97AL133A IN THE PRESENCE OF 8 ATM
Krypton
pdb|1C6B|A Chain A, T4 Lysozyme Mutant C54tC97AL133A IN THE PRESENCE OF 8 ATM
Xenon
pdb|1L69|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V+ AK
Sbjct: 125 RWDEAAVNAAK 135
>pdb|3K2R|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme Mutant
K65v1R76V1
Length = 164
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NTNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL 251
+FN+ + A+ + + +PVY+ L
Sbjct: 65 CLFNQDVDAAVCGILRNAKLKPVYDSL 91
>pdb|1DYC|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A +++AK
Sbjct: 125 RWDEAAINLAK 135
>pdb|2LC9|A Chain A, Solution Structure Of A Minor And Transiently Formed State
Of A T4 Lysozyme Mutant
Length = 164
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NTNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L R + ++ + V LP L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAAAINMVFQMGETGVAAFTNSLPMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|239L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKAYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NTNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL 251
+FN+ + A+ + + +PVY+ L
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSL 91
>pdb|247L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NTNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL 251
+FN+ + A+ + +++PVY+ L
Sbjct: 65 KLFNQDVDAAVRGILRNAKAKPVYDSL 91
>pdb|1L00|A Chain A, Perturbation Of Trp 138 In T4 Lysozyme By Mutations At Gln
105 Used To Correlate Changes In Structure, Stability,
Solvation, And Spectroscopic Properties
Length = 164
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + + + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFAMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1D3J|A Chain A, N-Terminal Domain Core Methionine Mutation
Length = 164
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NTNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL 251
MFN+ + A+ + + +PVY+ L
Sbjct: 65 KMFNQDVDAAVRGILRNAKLKPVYDSL 91
>pdb|1L24|A Chain A, Enhanced Protein Thermostability From Site-directed
Mutations That Decrease The Entropy Of Unfolding
Length = 164
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNPKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L99|A Chain A, Perturbation Of Trp 138 In T4 Lysozyme By Mutations At Gln
105 Used To Correlate Changes In Structure, Stability,
Solvation, And Spectroscopic Properties
Length = 164
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + + + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFGMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|110L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 168 DALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMF 227
+ L++ D +GY TIGI L +A L L K I GV+ + + + +F
Sbjct: 11 EGLRLKIYKDTEGYYTIGI-GHLLTKSPSLNAAKLELDKAIGRNTN--GVITKDEAEKLF 67
Query: 228 NRSIKDALVAEEKFFRSRPVYNGL 251
N+ + A+ + + +PVY+ L
Sbjct: 68 NQDVDAAVRGILRNAKLKPVYDSL 91
>pdb|1L71|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R +A ++AK
Sbjct: 125 RWDAAAANLAK 135
>pdb|3C83|A Chain A, Bacteriophage T4 Lysozyme Mutant D89a In Wildtype
Background At Room Temperature
Length = 164
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYASLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L50|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCVLINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L75|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQ 266
+FN+ + A+ + + +PVY+ L RC + + ++ +
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGE 108
>pdb|1L73|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQ 266
+FN+ + A+ + + +PVY+ L RC + + ++ +
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGE 108
>pdb|1CTW|A Chain A, T4 Lysozyme Mutant I78a
Length = 164
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NTNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL 251
+FN+ + A+ + + +PVY+ L
Sbjct: 65 KLFNQDVDAAVRGALRNAKLKPVYDSL 91
>pdb|1DYD|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A +++AK
Sbjct: 125 RWDEAALNLAK 135
>pdb|168L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|168L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|168L|C Chain C, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|168L|D Chain D, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|168L|E Chain E, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQ 266
+FN+ + A+ + + +PVY+ L RC + + ++ +
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGE 108
>pdb|1DYF|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A +++AK
Sbjct: 125 RWDEAAMNLAK 135
>pdb|191L|A Chain A, A Helix Initiation Signal In T4 Lysozyme Identified By
Polyalanine Mutagenesis
Length = 164
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ G + + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRAC------AGAITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQ 266
+FN+ + A+ + + +PVY+ L RC + + ++ +
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGE 108
>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE
(1-605) Complexed With Adp And Substrate
Length = 605
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 376 NATGPKSA-LFVPDVPFEVLIRRQIARLLDP---SLQCARFIYDELMKISHHCLVNELQR 431
+ATGPK + V E L+ + R ++P +LQ A + I LV R
Sbjct: 289 DATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGL---SVSDIDDVILVGGQTR 345
Query: 432 FPVLRKRMDEVIGNFLREGLEPSETM-IGHIIE 463
P+++K++ E G R+ + P E + IG ++
Sbjct: 346 MPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQ 378
>pdb|1L48|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCVLINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L74|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 29.3 bits (64), Expect = 9.2, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQ 266
+FN+ + A+ + + +PVY+ L RC + + ++ +
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGE 108
>pdb|1L36|A Chain A, Toward A Simplification Of The Protein Folding Problem: A
Stabilizing Polyalanine Alpha-Helix Engineered In T4
Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 9.2, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQ 266
+FN+ + A+ + + +PVY+ L RC + + ++ +
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGE 108
>pdb|3C7W|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 9.3, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L +C + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRKCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L51|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 9.5, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCVLINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|1L49|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 9.6, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCVLINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|223L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
pdb|225L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
pdb|226L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
Length = 164
Score = 29.3 bits (64), Expect = 9.6, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQ 266
+FN+ + A+ + + +PVY+ L RC + + ++ +
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGE 108
>pdb|1DYB|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 9.6, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQ 266
+FN+ + A+ + + +PVY+ L RC + + ++ +
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGE 108
>pdb|1L70|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 29.3 bits (64), Expect = 9.6, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A ++AK
Sbjct: 125 RWDEAAAALAK 135
>pdb|3C81|A Chain A, Mutant K85a Of T4 Lysozyme In Wildtype Background At Room
Temperature
Length = 164
Score = 29.3 bits (64), Expect = 9.7, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLAPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
>pdb|173L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 9.7, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLEIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L RC + + ++ + V L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLEMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++A+
Sbjct: 125 RWDEAAVNLAE 135
>pdb|1L33|A Chain A, Contributions Of Left-Handed Helical Residues To The
Structure And Stability Of Bacteriophage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 9.7, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NCNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQ 266
+FN+ + A+ + + +PVY+ L RC + + ++ +
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGE 108
>pdb|217L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
pdb|3L64|A Chain A, T4 Lysozyme S44eWT
Length = 164
Score = 29.3 bits (64), Expect = 9.9, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKEELDKAIGR------NTNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL 251
+FN+ + A+ + + +PVY+ L
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSL 91
>pdb|161L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 29.3 bits (64), Expect = 10.0, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 168 DALQIAGIADPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 224
+ L++ D +GY TIGI +TK ++ + +G+ GV+ + + +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR------NTNGVITKDEAE 64
Query: 225 IMFNRSIKDALVAEEKFFRSRPVYNGL--ADRCGVPQLAKKLNQILVQHIKAILPGLKS- 281
+FN+ + A+ + + +PVY+ L R + + ++ + V A L L+
Sbjct: 65 KLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTASLRMLQQK 124
Query: 282 RISSALVSVAK 292
R A V++AK
Sbjct: 125 RWDEAAVNLAK 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,568,344
Number of Sequences: 62578
Number of extensions: 861019
Number of successful extensions: 2422
Number of sequences better than 100.0: 301
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 290
Number of HSP's that attempted gapping in prelim test: 2372
Number of HSP's gapped (non-prelim): 319
length of query: 792
length of database: 14,973,337
effective HSP length: 107
effective length of query: 685
effective length of database: 8,277,491
effective search space: 5670081335
effective search space used: 5670081335
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)