Query 003841
Match_columns 792
No_of_seqs 305 out of 1778
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 13:01:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 7E-109 1E-113 961.4 46.1 615 20-708 2-656 (657)
2 PF01031 Dynamin_M: Dynamin ce 100.0 9.4E-61 2E-65 516.7 25.2 287 199-485 1-289 (295)
3 smart00053 DYNc Dynamin, GTPas 100.0 3.8E-45 8.3E-50 381.4 21.1 204 22-227 1-239 (240)
4 KOG0447 Dynamin-like GTP bindi 100.0 1.4E-32 3.1E-37 300.0 30.9 386 21-421 280-724 (980)
5 smart00302 GED Dynamin GTPase 99.9 1.2E-26 2.5E-31 208.1 12.2 91 615-705 2-92 (92)
6 PF02212 GED: Dynamin GTPase e 99.9 1.2E-22 2.6E-27 182.4 11.8 92 614-705 1-92 (92)
7 PF00350 Dynamin_N: Dynamin fa 99.7 3.9E-17 8.5E-22 161.1 14.5 141 50-190 1-168 (168)
8 COG0699 Predicted GTPases (dyn 99.6 4.8E-13 1E-17 155.8 28.9 502 97-700 2-542 (546)
9 COG0218 Predicted GTPase [Gene 99.5 7.9E-14 1.7E-18 140.2 12.7 128 44-197 21-152 (200)
10 COG1160 Predicted GTPases [Gen 99.0 8.9E-10 1.9E-14 122.8 9.4 173 22-223 150-334 (444)
11 COG0486 ThdF Predicted GTPase 98.8 9E-07 2E-11 99.4 22.3 147 23-197 192-341 (454)
12 PRK09866 hypothetical protein; 98.8 3.1E-06 6.7E-11 98.5 27.2 60 27-90 53-112 (741)
13 TIGR00436 era GTP-binding prot 98.6 4.9E-07 1.1E-11 97.0 13.0 119 49-195 2-122 (270)
14 COG1160 Predicted GTPases [Gen 98.6 3.6E-07 7.7E-12 102.3 12.0 123 48-195 4-127 (444)
15 PF02421 FeoB_N: Ferrous iron 98.6 1.4E-07 3E-12 93.0 7.8 117 49-195 2-120 (156)
16 COG1159 Era GTPase [General fu 98.5 3.1E-06 6.8E-11 90.3 15.0 168 49-249 8-178 (298)
17 TIGR03156 GTP_HflX GTP-binding 98.4 3.2E-06 7E-11 94.2 15.2 126 45-194 187-315 (351)
18 PRK00089 era GTPase Era; Revie 98.4 8.7E-06 1.9E-10 88.2 17.5 120 49-194 7-127 (292)
19 cd01878 HflX HflX subfamily. 98.4 4.2E-06 9E-11 85.4 13.9 127 45-195 39-168 (204)
20 TIGR00450 mnmE_trmE_thdF tRNA 98.4 6.4E-05 1.4E-09 86.3 24.6 82 24-108 180-262 (442)
21 PF01926 MMR_HSR1: 50S ribosom 98.4 6.1E-06 1.3E-10 76.6 13.4 114 49-189 1-116 (116)
22 TIGR03594 GTPase_EngA ribosome 98.4 7.3E-06 1.6E-10 93.5 16.8 145 23-194 146-297 (429)
23 TIGR03598 GTPase_YsxC ribosome 98.3 3.7E-06 8E-11 84.2 11.8 127 44-195 15-144 (179)
24 PRK11058 GTPase HflX; Provisio 98.3 4.8E-06 1E-10 95.0 14.0 126 45-194 195-323 (426)
25 PRK03003 GTP-binding protein D 98.3 1.3E-05 2.8E-10 92.9 17.0 124 46-194 210-336 (472)
26 PRK00093 GTP-binding protein D 98.3 1.3E-05 2.7E-10 91.8 16.4 122 46-194 172-298 (435)
27 PRK00454 engB GTP-binding prot 98.3 9.7E-06 2.1E-10 81.7 13.4 74 29-108 4-81 (196)
28 PRK09518 bifunctional cytidyla 98.3 1.5E-05 3.3E-10 96.8 17.2 124 46-195 449-576 (712)
29 PRK05291 trmE tRNA modificatio 98.3 9.9E-05 2.2E-09 85.0 22.2 81 25-108 192-274 (449)
30 cd01852 AIG1 AIG1 (avrRpt2-ind 98.2 1.2E-05 2.5E-10 82.0 12.7 147 49-221 2-163 (196)
31 PRK03003 GTP-binding protein D 98.2 1.5E-05 3.3E-10 92.3 14.4 124 45-194 36-160 (472)
32 cd01876 YihA_EngB The YihA (En 98.2 1E-05 2.2E-10 78.2 10.4 123 49-196 1-126 (170)
33 cd01853 Toc34_like Toc34-like 98.2 3.9E-05 8.4E-10 81.6 15.0 65 43-110 27-92 (249)
34 cd01868 Rab11_like Rab11-like. 98.1 2.2E-05 4.8E-10 76.7 12.0 119 48-194 4-122 (165)
35 cd01887 IF2_eIF5B IF2/eIF5B (i 98.1 1.5E-05 3.2E-10 77.9 10.3 60 48-107 1-60 (168)
36 TIGR03594 GTPase_EngA ribosome 98.1 2.3E-05 5E-10 89.4 13.0 122 49-196 1-123 (429)
37 cd04104 p47_IIGP_like p47 (47- 98.1 5.2E-05 1.1E-09 77.5 13.9 25 48-72 2-26 (197)
38 cd04163 Era Era subfamily. Er 98.1 6.4E-05 1.4E-09 72.3 13.3 59 47-108 3-62 (168)
39 KOG1191 Mitochondrial GTPase [ 98.1 0.00012 2.6E-09 82.5 17.1 45 46-90 267-312 (531)
40 PRK00093 GTP-binding protein D 98.1 4.5E-05 9.7E-10 87.3 14.2 120 47-194 1-123 (435)
41 COG1084 Predicted GTPase [Gene 98.1 5.3E-05 1.1E-09 81.8 13.6 144 28-196 150-296 (346)
42 cd01867 Rab8_Rab10_Rab13_like 98.0 5.4E-05 1.2E-09 74.5 12.0 28 47-74 3-30 (167)
43 PRK09518 bifunctional cytidyla 98.0 3.2E-05 7E-10 93.9 12.6 123 46-194 274-397 (712)
44 PRK15494 era GTPase Era; Provi 98.0 4.8E-05 1.1E-09 84.5 12.8 57 48-107 53-110 (339)
45 cd01898 Obg Obg subfamily. Th 98.0 4.4E-05 9.6E-10 74.8 11.1 57 49-107 2-58 (170)
46 TIGR00991 3a0901s02IAP34 GTP-b 98.0 0.00012 2.7E-09 79.6 15.2 75 30-108 22-97 (313)
47 cd01897 NOG NOG1 is a nucleola 98.0 5.1E-05 1.1E-09 74.3 11.1 56 48-107 1-57 (168)
48 PRK04213 GTP-binding protein; 98.0 6.6E-05 1.4E-09 76.3 12.2 57 45-108 7-63 (201)
49 cd01895 EngA2 EngA2 subfamily. 98.0 7.2E-05 1.6E-09 72.8 11.9 125 47-195 2-128 (174)
50 cd01861 Rab6 Rab6 subfamily. 98.0 7.1E-05 1.5E-09 72.6 11.6 58 49-107 2-59 (161)
51 cd01866 Rab2 Rab2 subfamily. 98.0 8.1E-05 1.7E-09 73.4 12.0 33 47-79 4-36 (168)
52 cd00880 Era_like Era (E. coli 98.0 0.00013 2.9E-09 69.0 13.1 55 52-108 1-56 (163)
53 PRK12298 obgE GTPase CgtA; Rev 97.9 5.2E-05 1.1E-09 85.6 11.8 58 47-108 159-218 (390)
54 cd01865 Rab3 Rab3 subfamily. 97.9 0.00011 2.3E-09 72.3 12.2 119 48-195 2-121 (165)
55 PF05049 IIGP: Interferon-indu 97.9 1.4E-05 3.1E-10 88.9 6.5 133 24-192 16-153 (376)
56 PRK12299 obgE GTPase CgtA; Rev 97.9 9.9E-05 2.1E-09 81.8 12.6 123 46-195 157-286 (335)
57 cd00154 Rab Rab family. Rab G 97.9 0.00014 3E-09 69.4 11.9 28 48-75 1-28 (159)
58 cd01894 EngA1 EngA1 subfamily. 97.9 7E-05 1.5E-09 71.9 9.8 117 51-195 1-120 (157)
59 cd04164 trmE TrmE (MnmE, ThdF, 97.9 0.00019 4.2E-09 68.7 12.6 57 49-108 3-60 (157)
60 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.9 0.00014 3.1E-09 71.1 11.8 26 48-73 3-28 (166)
61 cd04112 Rab26 Rab26 subfamily. 97.8 0.00015 3.2E-09 73.4 11.9 117 49-194 2-120 (191)
62 cd04123 Rab21 Rab21 subfamily. 97.8 0.0002 4.4E-09 69.1 12.0 26 49-74 2-27 (162)
63 cd04119 RJL RJL (RabJ-Like) su 97.8 0.0002 4.4E-09 69.5 12.0 27 49-75 2-28 (168)
64 cd01850 CDC_Septin CDC/Septin. 97.8 0.00015 3.2E-09 78.3 12.0 133 49-195 6-158 (276)
65 cd00881 GTP_translation_factor 97.8 8.1E-05 1.7E-09 73.9 8.9 25 49-73 1-25 (189)
66 TIGR00231 small_GTP small GTP- 97.8 0.00025 5.3E-09 67.1 11.8 58 48-107 2-60 (161)
67 cd04168 TetM_like Tet(M)-like 97.8 0.00014 2.9E-09 76.9 10.8 21 50-70 2-22 (237)
68 cd04122 Rab14 Rab14 subfamily. 97.8 0.00025 5.5E-09 69.6 12.1 28 49-76 4-31 (166)
69 cd01860 Rab5_related Rab5-rela 97.7 0.00036 7.8E-09 67.8 12.2 26 49-74 3-28 (163)
70 TIGR02729 Obg_CgtA Obg family 97.7 0.00039 8.4E-09 77.0 13.8 60 46-107 156-215 (329)
71 cd04165 GTPBP1_like GTPBP1-lik 97.7 7.4E-05 1.6E-09 78.2 7.7 30 49-79 1-30 (224)
72 cd04114 Rab30 Rab30 subfamily. 97.7 0.00027 5.8E-09 69.2 11.2 30 46-75 6-35 (169)
73 PF04548 AIG1: AIG1 family; I 97.7 0.00024 5.2E-09 73.6 11.3 146 49-220 2-163 (212)
74 cd04171 SelB SelB subfamily. 97.7 0.00022 4.8E-09 69.1 10.4 22 49-70 2-23 (164)
75 PRK12297 obgE GTPase CgtA; Rev 97.7 0.0004 8.6E-09 79.2 13.7 58 47-108 158-217 (424)
76 cd04142 RRP22 RRP22 subfamily. 97.7 0.00045 9.7E-09 70.8 12.8 24 49-72 2-25 (198)
77 cd01864 Rab19 Rab19 subfamily. 97.7 0.0004 8.7E-09 68.0 11.9 27 47-73 3-29 (165)
78 PF00009 GTP_EFTU: Elongation 97.7 7.1E-05 1.5E-09 75.7 6.6 23 48-70 4-26 (188)
79 cd01862 Rab7 Rab7 subfamily. 97.7 0.00046 9.9E-09 67.6 12.2 33 49-81 2-34 (172)
80 PF10662 PduV-EutP: Ethanolami 97.7 0.00016 3.5E-09 70.2 8.6 25 48-72 2-26 (143)
81 cd01879 FeoB Ferrous iron tran 97.7 0.00022 4.8E-09 68.7 9.7 54 52-108 1-54 (158)
82 smart00175 RAB Rab subfamily o 97.7 0.00045 9.7E-09 67.0 11.8 25 49-73 2-26 (164)
83 COG3596 Predicted GTPase [Gene 97.7 0.00057 1.2E-08 72.5 13.1 204 46-298 37-252 (296)
84 KOG2486 Predicted GTPase [Gene 97.7 0.0001 2.2E-09 77.9 7.6 127 46-195 135-263 (320)
85 cd04113 Rab4 Rab4 subfamily. 97.7 0.00043 9.4E-09 67.3 11.6 31 49-79 2-32 (161)
86 cd04166 CysN_ATPS CysN_ATPS su 97.7 0.00014 3.1E-09 74.9 8.5 23 49-71 1-23 (208)
87 PRK12296 obgE GTPase CgtA; Rev 97.6 0.00035 7.6E-09 80.9 12.3 59 46-107 158-216 (500)
88 cd01884 EF_Tu EF-Tu subfamily. 97.6 0.00012 2.6E-09 75.0 7.6 22 49-70 4-25 (195)
89 cd04169 RF3 RF3 subfamily. Pe 97.6 0.00029 6.3E-09 75.7 10.7 22 49-70 4-25 (267)
90 cd04159 Arl10_like Arl10-like 97.6 0.00062 1.4E-08 64.9 11.9 25 49-73 1-25 (159)
91 cd04170 EF-G_bact Elongation f 97.6 0.00026 5.6E-09 75.9 9.7 21 50-70 2-22 (268)
92 TIGR00993 3a0901s04IAP86 chlor 97.6 0.0011 2.3E-08 78.2 15.0 129 48-195 119-251 (763)
93 cd01886 EF-G Elongation factor 97.6 0.00013 2.8E-09 78.5 7.2 19 50-68 2-20 (270)
94 cd01863 Rab18 Rab18 subfamily. 97.6 0.001 2.3E-08 64.5 13.0 29 49-77 2-30 (161)
95 cd01890 LepA LepA subfamily. 97.6 0.0002 4.4E-09 70.9 7.9 22 49-70 2-23 (179)
96 cd04106 Rab23_lke Rab23-like s 97.6 0.00073 1.6E-08 65.6 11.7 25 49-73 2-26 (162)
97 cd04139 RalA_RalB RalA/RalB su 97.6 0.0004 8.6E-09 67.3 9.5 25 49-73 2-26 (164)
98 PRK15467 ethanolamine utilizat 97.5 0.00063 1.4E-08 67.0 10.9 23 49-71 3-25 (158)
99 cd00876 Ras Ras family. The R 97.5 0.00068 1.5E-08 65.2 10.7 33 49-82 1-33 (160)
100 cd04125 RabA_like RabA-like su 97.5 0.00088 1.9E-08 67.4 11.9 26 48-73 1-26 (188)
101 smart00173 RAS Ras subfamily o 97.5 0.00095 2.1E-08 65.0 11.7 25 49-73 2-26 (164)
102 cd04118 Rab24 Rab24 subfamily. 97.5 0.00062 1.3E-08 68.6 10.6 25 49-73 2-26 (193)
103 cd00882 Ras_like_GTPase Ras-li 97.5 0.00051 1.1E-08 63.9 9.1 21 52-72 1-21 (157)
104 cd01881 Obg_like The Obg-like 97.5 0.00046 9.9E-09 67.8 8.9 53 52-107 1-54 (176)
105 cd04136 Rap_like Rap-like subf 97.4 0.0012 2.6E-08 64.0 11.0 25 48-72 2-26 (163)
106 cd04127 Rab27A Rab27a subfamil 97.4 0.0017 3.7E-08 64.4 12.3 29 47-75 4-32 (180)
107 cd01858 NGP_1 NGP-1. Autoanti 97.4 0.00039 8.5E-09 68.2 7.4 74 24-106 82-156 (157)
108 PLN03110 Rab GTPase; Provision 97.4 0.0014 3.1E-08 67.9 12.0 27 47-73 12-38 (216)
109 CHL00071 tufA elongation facto 97.4 0.00029 6.2E-09 80.3 7.4 23 48-70 13-35 (409)
110 cd04145 M_R_Ras_like M-Ras/R-R 97.4 0.0012 2.6E-08 64.1 10.6 24 49-72 4-27 (164)
111 cd04157 Arl6 Arl6 subfamily. 97.4 0.0019 4E-08 62.6 11.8 24 49-72 1-24 (162)
112 cd04152 Arl4_Arl7 Arl4/Arl7 su 97.4 0.002 4.4E-08 64.7 12.4 25 49-73 5-29 (183)
113 cd04138 H_N_K_Ras_like H-Ras/N 97.4 0.0011 2.5E-08 63.8 10.3 26 48-73 2-27 (162)
114 PRK09554 feoB ferrous iron tra 97.4 0.00066 1.4E-08 83.0 10.4 117 48-195 4-127 (772)
115 cd01891 TypA_BipA TypA (tyrosi 97.4 0.0011 2.4E-08 67.2 10.5 21 49-69 4-24 (194)
116 TIGR02528 EutP ethanolamine ut 97.4 0.00068 1.5E-08 64.6 8.4 24 49-72 2-25 (142)
117 smart00178 SAR Sar1p-like memb 97.4 0.0017 3.7E-08 65.3 11.7 55 47-107 17-71 (184)
118 cd00878 Arf_Arl Arf (ADP-ribos 97.3 0.0017 3.8E-08 62.8 11.2 24 49-72 1-24 (158)
119 KOG0448 Mitofusin 1 GTPase, in 97.3 0.0014 3E-08 76.7 11.9 158 28-201 94-282 (749)
120 cd01896 DRG The developmentall 97.3 0.0017 3.8E-08 68.3 11.7 36 49-85 2-38 (233)
121 cd04111 Rab39 Rab39 subfamily. 97.3 0.0028 6E-08 65.5 12.8 28 48-75 3-30 (211)
122 TIGR00491 aIF-2 translation in 97.3 0.001 2.2E-08 78.9 10.6 38 45-82 2-39 (590)
123 cd00879 Sar1 Sar1 subfamily. 97.3 0.0049 1.1E-07 61.9 14.1 44 38-86 12-55 (190)
124 cd04115 Rab33B_Rab33A Rab33B/R 97.3 0.0019 4.1E-08 63.8 10.8 25 48-72 3-27 (170)
125 cd04109 Rab28 Rab28 subfamily. 97.3 0.0023 5E-08 66.1 11.9 24 49-72 2-25 (215)
126 cd01893 Miro1 Miro1 subfamily. 97.3 0.0024 5.2E-08 62.8 11.5 24 49-72 2-25 (166)
127 cd04175 Rap1 Rap1 subgroup. T 97.3 0.0028 6.1E-08 61.8 11.7 27 48-74 2-28 (164)
128 cd04101 RabL4 RabL4 (Rab-like4 97.3 0.0046 1E-07 60.1 13.1 21 49-69 2-22 (164)
129 PRK00007 elongation factor G; 97.3 0.00085 1.8E-08 81.5 9.5 117 46-196 9-143 (693)
130 cd04156 ARLTS1 ARLTS1 subfamil 97.3 0.0054 1.2E-07 59.4 13.4 24 49-72 1-24 (160)
131 cd04146 RERG_RasL11_like RERG/ 97.2 0.0018 3.9E-08 63.3 10.1 25 49-73 1-25 (165)
132 cd04140 ARHI_like ARHI subfami 97.2 0.0023 4.9E-08 62.8 10.7 24 49-72 3-26 (165)
133 cd04107 Rab32_Rab38 Rab38/Rab3 97.2 0.0033 7.1E-08 64.1 12.3 26 49-74 2-27 (201)
134 cd04137 RheB Rheb (Ras Homolog 97.2 0.0025 5.4E-08 63.3 10.9 24 49-72 3-26 (180)
135 cd00157 Rho Rho (Ras homology) 97.2 0.0018 4E-08 63.2 9.7 24 49-72 2-25 (171)
136 PLN03127 Elongation factor Tu; 97.2 0.00053 1.2E-08 78.9 6.7 25 46-70 60-84 (447)
137 PLN03108 Rab family protein; P 97.2 0.0036 7.8E-08 64.5 12.2 30 47-76 6-35 (210)
138 cd01892 Miro2 Miro2 subfamily. 97.2 0.0033 7.1E-08 62.4 11.3 26 48-73 5-30 (169)
139 cd04110 Rab35 Rab35 subfamily. 97.2 0.0048 1E-07 62.9 12.6 26 47-72 6-31 (199)
140 cd04124 RabL2 RabL2 subfamily. 97.2 0.003 6.5E-08 61.9 10.5 27 49-75 2-28 (161)
141 cd04167 Snu114p Snu114p subfam 97.1 0.0018 3.8E-08 67.0 9.0 24 49-72 2-25 (213)
142 cd04160 Arfrp1 Arfrp1 subfamil 97.1 0.0028 6.1E-08 61.8 10.1 22 49-70 1-22 (167)
143 TIGR00475 selB selenocysteine- 97.1 0.0016 3.6E-08 77.4 9.9 23 49-71 2-24 (581)
144 cd01889 SelB_euk SelB subfamil 97.1 0.003 6.6E-08 63.9 10.5 22 49-70 2-23 (192)
145 cd04162 Arl9_Arfrp2_like Arl9/ 97.1 0.0044 9.5E-08 61.1 11.3 24 49-72 1-24 (164)
146 TIGR00484 EF-G translation elo 97.1 0.0017 3.7E-08 78.9 9.9 24 46-69 9-32 (689)
147 PRK12317 elongation factor 1-a 97.1 0.00057 1.2E-08 78.3 5.5 24 48-71 7-30 (425)
148 cd04176 Rap2 Rap2 subgroup. T 97.1 0.0028 6.1E-08 61.7 9.7 27 49-75 3-29 (163)
149 cd04151 Arl1 Arl1 subfamily. 97.1 0.0057 1.2E-07 59.4 11.8 24 49-72 1-24 (158)
150 cd04154 Arl2 Arl2 subfamily. 97.1 0.0064 1.4E-07 60.2 12.2 28 45-72 12-39 (173)
151 cd04177 RSR1 RSR1 subgroup. R 97.1 0.0043 9.3E-08 61.1 10.9 27 49-75 3-29 (168)
152 COG2262 HflX GTPases [General 97.1 0.0099 2.2E-07 66.4 14.6 129 43-196 188-320 (411)
153 TIGR00485 EF-Tu translation el 97.1 0.001 2.3E-08 75.4 7.1 23 48-70 13-35 (394)
154 PRK12739 elongation factor G; 97.0 0.002 4.4E-08 78.3 9.9 24 46-69 7-30 (691)
155 cd04120 Rab12 Rab12 subfamily. 97.0 0.0049 1.1E-07 63.5 11.3 25 49-73 2-26 (202)
156 CHL00189 infB translation init 97.0 0.0028 6E-08 76.9 10.4 117 46-195 243-362 (742)
157 cd01885 EF2 EF2 (for archaea a 97.0 0.0026 5.7E-08 66.5 9.1 22 49-70 2-23 (222)
158 cd01849 YlqF_related_GTPase Yl 97.0 0.0011 2.5E-08 64.9 5.8 56 45-106 98-154 (155)
159 cd04148 RGK RGK subfamily. Th 97.0 0.0056 1.2E-07 63.8 11.3 24 49-72 2-25 (221)
160 cd04147 Ras_dva Ras-dva subfam 97.0 0.0043 9.3E-08 63.2 10.1 26 49-74 1-26 (198)
161 cd04108 Rab36_Rab34 Rab34/Rab3 97.0 0.0073 1.6E-07 60.0 11.5 25 49-73 2-26 (170)
162 cd00877 Ran Ran (Ras-related n 97.0 0.0028 6.1E-08 62.6 8.4 24 49-72 2-25 (166)
163 PLN03118 Rab family protein; P 97.0 0.0048 1E-07 63.5 10.5 25 48-72 15-39 (211)
164 cd04144 Ras2 Ras2 subfamily. 97.0 0.0046 1E-07 62.4 10.2 24 49-72 1-24 (190)
165 cd01855 YqeH YqeH. YqeH is an 97.0 0.0016 3.6E-08 65.8 6.9 71 22-106 110-189 (190)
166 cd04117 Rab15 Rab15 subfamily. 97.0 0.0091 2E-07 58.5 11.9 27 49-75 2-28 (161)
167 KOG1423 Ras-like GTPase ERA [C 97.0 0.013 2.9E-07 63.1 13.6 127 49-197 74-202 (379)
168 PRK05306 infB translation init 97.0 0.0033 7.1E-08 76.8 10.5 113 46-194 289-403 (787)
169 cd04178 Nucleostemin_like Nucl 97.0 0.0023 4.9E-08 64.4 7.7 54 47-106 117-171 (172)
170 cd04116 Rab9 Rab9 subfamily. 96.9 0.0091 2E-07 58.6 11.7 29 47-75 5-33 (170)
171 PRK12736 elongation factor Tu; 96.9 0.0018 3.8E-08 73.6 7.4 22 49-70 14-35 (394)
172 cd04155 Arl3 Arl3 subfamily. 96.9 0.01 2.3E-07 58.2 11.9 28 45-72 12-39 (173)
173 PLN03126 Elongation factor Tu; 96.9 0.0022 4.7E-08 74.5 8.0 24 47-70 81-104 (478)
174 TIGR00487 IF-2 translation ini 96.9 0.004 8.7E-08 74.1 10.3 114 46-194 86-201 (587)
175 PRK05506 bifunctional sulfate 96.9 0.002 4.3E-08 77.6 7.7 25 47-71 24-48 (632)
176 PRK00049 elongation factor Tu; 96.8 0.0027 5.9E-08 72.1 8.1 23 48-70 13-35 (396)
177 TIGR01394 TypA_BipA GTP-bindin 96.8 0.0035 7.6E-08 74.7 9.0 21 49-69 3-23 (594)
178 cd04132 Rho4_like Rho4-like su 96.8 0.011 2.4E-07 59.1 11.2 24 49-72 2-25 (187)
179 cd04141 Rit_Rin_Ric Rit/Rin/Ri 96.8 0.0084 1.8E-07 59.7 10.1 24 49-72 4-27 (172)
180 cd04153 Arl5_Arl8 Arl5/Arl8 su 96.8 0.015 3.4E-07 57.7 12.0 27 47-73 15-41 (174)
181 cd04161 Arl2l1_Arl13_like Arl2 96.8 0.018 3.8E-07 56.9 12.3 22 49-70 1-22 (167)
182 TIGR00437 feoB ferrous iron tr 96.8 0.0044 9.5E-08 73.9 9.4 110 54-194 1-113 (591)
183 PRK05124 cysN sulfate adenylyl 96.8 0.003 6.5E-08 73.4 7.7 28 44-71 24-51 (474)
184 PRK12735 elongation factor Tu; 96.7 0.0027 5.9E-08 72.1 7.1 23 48-70 13-35 (396)
185 COG1100 GTPase SAR1 and relate 96.7 0.014 3.1E-07 59.8 11.7 120 48-198 6-129 (219)
186 PRK04004 translation initiatio 96.7 0.0052 1.1E-07 73.1 9.5 29 44-72 3-31 (586)
187 cd01883 EF1_alpha Eukaryotic e 96.7 0.0037 8.1E-08 65.0 7.2 20 50-69 2-21 (219)
188 smart00174 RHO Rho (Ras homolo 96.7 0.0073 1.6E-07 59.4 8.9 23 50-72 1-23 (174)
189 TIGR01393 lepA GTP-binding pro 96.7 0.0051 1.1E-07 73.4 9.2 23 48-70 4-26 (595)
190 PTZ00369 Ras-like protein; Pro 96.7 0.015 3.3E-07 58.6 11.3 27 47-73 5-31 (189)
191 PRK10512 selenocysteinyl-tRNA- 96.7 0.004 8.7E-08 74.5 8.1 22 49-70 2-23 (614)
192 cd01870 RhoA_like RhoA-like su 96.7 0.032 6.8E-07 54.9 13.3 25 48-72 2-26 (175)
193 cd04102 RabL3 RabL3 (Rab-like3 96.7 0.036 7.7E-07 57.2 14.0 26 49-74 2-27 (202)
194 PRK00741 prfC peptide chain re 96.7 0.0086 1.9E-07 70.5 10.5 23 46-68 9-31 (526)
195 cd01857 HSR1_MMR1 HSR1/MMR1. 96.6 0.0036 7.8E-08 60.4 5.7 53 49-107 85-138 (141)
196 cd01882 BMS1 Bms1. Bms1 is an 96.6 0.015 3.2E-07 60.9 10.6 25 46-70 37-62 (225)
197 PLN03071 GTP-binding nuclear p 96.6 0.01 2.2E-07 61.7 9.4 27 46-72 12-38 (219)
198 cd04135 Tc10 TC10 subfamily. 96.5 0.016 3.4E-07 57.1 10.1 25 49-73 2-26 (174)
199 cd01888 eIF2_gamma eIF2-gamma 96.5 0.012 2.7E-07 60.3 9.7 22 49-70 2-23 (203)
200 cd04128 Spg1 Spg1p. Spg1p (se 96.5 0.022 4.7E-07 57.4 10.9 25 49-73 2-26 (182)
201 cd04134 Rho3 Rho3 subfamily. 96.5 0.019 4.1E-07 58.0 10.5 24 49-72 2-25 (189)
202 TIGR02034 CysN sulfate adenyly 96.5 0.0041 8.9E-08 70.9 6.1 22 49-70 2-23 (406)
203 cd04149 Arf6 Arf6 subfamily. 96.5 0.039 8.5E-07 54.6 12.4 27 47-73 9-35 (168)
204 PF00071 Ras: Ras family; Int 96.4 0.017 3.7E-07 56.0 9.5 24 49-72 1-24 (162)
205 PTZ00258 GTP-binding protein; 96.4 0.0048 1E-07 69.6 6.3 46 45-90 19-64 (390)
206 PRK13351 elongation factor G; 96.4 0.012 2.6E-07 71.7 9.9 24 46-69 7-30 (687)
207 PRK10218 GTP-binding protein; 96.3 0.0068 1.5E-07 72.3 7.2 24 46-69 4-27 (607)
208 TIGR03596 GTPase_YlqF ribosome 96.3 0.0082 1.8E-07 64.8 7.3 83 23-111 89-177 (276)
209 cd04105 SR_beta Signal recogni 96.3 0.04 8.7E-07 56.6 12.0 25 48-72 1-25 (203)
210 cd04143 Rhes_like Rhes_like su 96.3 0.038 8.3E-07 58.7 12.1 24 49-72 2-25 (247)
211 KOG0094 GTPase Rab6/YPT6/Ryh1, 96.3 0.012 2.6E-07 59.6 7.7 27 44-70 19-45 (221)
212 cd04158 ARD1 ARD1 subfamily. 96.3 0.038 8.2E-07 54.5 11.3 24 49-72 1-24 (169)
213 cd04131 Rnd Rnd subfamily. Th 96.3 0.021 4.6E-07 57.4 9.3 24 49-72 3-26 (178)
214 PRK05433 GTP-binding protein L 96.2 0.015 3.2E-07 69.6 9.4 24 47-70 7-30 (600)
215 cd01856 YlqF YlqF. Proteins o 96.2 0.017 3.7E-07 57.5 8.2 54 47-106 115-169 (171)
216 PF03193 DUF258: Protein of un 96.2 0.0038 8.1E-08 62.1 3.4 60 48-113 36-103 (161)
217 cd01851 GBP Guanylate-binding 96.2 0.0073 1.6E-07 63.2 5.6 59 46-108 6-71 (224)
218 TIGR00483 EF-1_alpha translati 96.1 0.0068 1.5E-07 69.5 5.6 23 48-70 8-30 (426)
219 PLN00116 translation elongatio 96.1 0.015 3.2E-07 72.3 8.6 44 149-193 99-163 (843)
220 PRK09563 rbgA GTPase YlqF; Rev 96.1 0.0077 1.7E-07 65.4 5.4 58 47-110 121-179 (287)
221 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 96.1 0.054 1.2E-06 57.1 11.5 26 47-72 13-38 (232)
222 cd01874 Cdc42 Cdc42 subfamily. 96.1 0.041 8.8E-07 55.0 10.1 24 49-72 3-26 (175)
223 cd04121 Rab40 Rab40 subfamily. 96.0 0.061 1.3E-06 54.8 11.5 26 47-72 6-31 (189)
224 TIGR00503 prfC peptide chain r 96.0 0.025 5.4E-07 66.6 9.7 23 46-68 10-32 (527)
225 cd04150 Arf1_5_like Arf1-Arf5- 96.0 0.087 1.9E-06 51.5 12.1 24 49-72 2-25 (159)
226 PF00735 Septin: Septin; Inte 96.0 0.07 1.5E-06 57.9 12.3 134 49-196 6-158 (281)
227 cd01900 YchF YchF subfamily. 96.0 0.0083 1.8E-07 64.7 4.9 40 50-89 1-40 (274)
228 smart00177 ARF ARF-like small 95.9 0.097 2.1E-06 52.1 12.0 26 47-72 13-38 (175)
229 PRK12288 GTPase RsgA; Reviewed 95.9 0.0077 1.7E-07 67.2 4.5 59 49-113 207-273 (347)
230 TIGR01425 SRP54_euk signal rec 95.9 0.027 5.9E-07 64.3 8.9 44 167-210 226-269 (429)
231 cd04126 Rab20 Rab20 subfamily. 95.9 0.055 1.2E-06 56.6 10.5 24 49-72 2-25 (220)
232 COG1161 Predicted GTPases [Gen 95.9 0.0086 1.9E-07 66.2 4.7 59 49-112 134-192 (322)
233 PF08477 Miro: Miro-like prote 95.9 0.0057 1.2E-07 56.4 2.8 25 49-73 1-25 (119)
234 PLN00223 ADP-ribosylation fact 95.9 0.1 2.3E-06 52.4 12.1 25 48-72 18-42 (181)
235 cd04130 Wrch_1 Wrch-1 subfamil 95.8 0.084 1.8E-06 52.1 11.2 25 49-73 2-26 (173)
236 TIGR00750 lao LAO/AO transport 95.8 0.19 4.1E-06 55.0 14.9 25 46-70 33-57 (300)
237 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 95.8 0.073 1.6E-06 55.7 11.1 24 49-72 3-26 (222)
238 TIGR03597 GTPase_YqeH ribosome 95.8 0.016 3.5E-07 65.0 6.5 56 48-109 155-216 (360)
239 TIGR00157 ribosome small subun 95.8 0.011 2.3E-07 62.9 4.8 61 48-115 121-189 (245)
240 cd01871 Rac1_like Rac1-like su 95.8 0.075 1.6E-06 53.0 10.5 24 49-72 3-26 (174)
241 PTZ00416 elongation factor 2; 95.7 0.022 4.8E-07 70.7 8.0 44 149-193 93-157 (836)
242 PTZ00141 elongation factor 1- 95.7 0.015 3.2E-07 67.2 6.0 21 49-69 9-29 (446)
243 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 95.7 0.092 2E-06 53.0 11.0 25 48-72 6-30 (182)
244 PRK12289 GTPase RsgA; Reviewed 95.7 0.013 2.8E-07 65.5 5.1 58 49-112 174-239 (352)
245 PTZ00133 ADP-ribosylation fact 95.7 0.14 3.1E-06 51.4 12.2 25 48-72 18-42 (182)
246 PRK14723 flhF flagellar biosyn 95.6 0.034 7.4E-07 67.5 8.8 22 49-70 187-208 (767)
247 PRK04000 translation initiatio 95.5 0.029 6.4E-07 64.1 7.2 23 48-70 10-32 (411)
248 TIGR00490 aEF-2 translation el 95.5 0.064 1.4E-06 65.7 10.5 24 46-69 18-41 (720)
249 TIGR03680 eif2g_arch translati 95.4 0.017 3.6E-07 65.9 5.0 22 49-70 6-27 (406)
250 PRK09602 translation-associate 95.3 0.016 3.5E-07 65.8 4.4 39 48-86 2-40 (396)
251 PRK09435 membrane ATPase/prote 95.3 0.14 2.9E-06 57.0 11.5 25 46-70 55-79 (332)
252 PRK07560 elongation factor EF- 95.3 0.054 1.2E-06 66.4 9.1 26 45-70 18-43 (731)
253 COG5192 BMS1 GTP-binding prote 95.3 0.057 1.2E-06 62.0 8.3 113 43-196 64-179 (1077)
254 PRK11889 flhF flagellar biosyn 95.2 0.081 1.7E-06 59.8 9.4 56 167-225 365-420 (436)
255 PRK12740 elongation factor G; 95.2 0.051 1.1E-06 66.0 8.4 18 53-70 1-18 (668)
256 PRK00098 GTPase RsgA; Reviewed 95.2 0.041 8.9E-07 60.1 7.0 55 48-108 165-227 (298)
257 COG0370 FeoB Fe2+ transport sy 95.1 0.065 1.4E-06 63.5 8.7 118 48-195 4-123 (653)
258 cd01899 Ygr210 Ygr210 subfamil 95.0 0.02 4.2E-07 63.3 3.7 37 50-86 1-37 (318)
259 PRK09601 GTP-binding protein Y 95.0 0.033 7.1E-07 62.4 5.3 38 48-86 3-41 (364)
260 COG1163 DRG Predicted GTPase [ 94.9 0.033 7.2E-07 60.6 5.1 36 48-84 64-100 (365)
261 PRK14722 flhF flagellar biosyn 94.9 0.06 1.3E-06 60.6 7.3 22 49-70 139-160 (374)
262 PRK12727 flagellar biosynthesi 94.9 0.081 1.8E-06 61.8 8.5 23 48-70 351-373 (559)
263 KOG1707 Predicted Ras related/ 94.9 0.083 1.8E-06 61.4 8.4 121 48-197 10-132 (625)
264 PRK13796 GTPase YqeH; Provisio 94.8 0.021 4.7E-07 64.2 3.6 54 48-107 161-220 (365)
265 PRK14721 flhF flagellar biosyn 94.8 0.1 2.2E-06 59.7 8.9 23 48-70 192-214 (420)
266 KOG1424 Predicted GTP-binding 94.7 0.026 5.7E-07 64.5 4.0 62 47-114 314-376 (562)
267 cd01854 YjeQ_engC YjeQ/EngC. 94.7 0.033 7.1E-07 60.6 4.4 56 48-109 162-225 (287)
268 PLN00043 elongation factor 1-a 94.7 0.036 7.8E-07 64.0 4.9 21 49-69 9-29 (447)
269 cd04133 Rop_like Rop subfamily 94.6 0.23 5E-06 49.9 10.1 24 49-72 3-26 (176)
270 PRK06731 flhF flagellar biosyn 94.6 0.24 5.1E-06 53.5 10.7 25 46-70 74-98 (270)
271 TIGR02836 spore_IV_A stage IV 94.6 0.21 4.5E-06 56.7 10.4 36 30-70 5-40 (492)
272 COG1136 SalX ABC-type antimicr 94.6 0.024 5.3E-07 59.3 3.0 40 148-189 161-201 (226)
273 PRK05703 flhF flagellar biosyn 94.5 0.17 3.6E-06 58.2 9.7 22 49-70 223-244 (424)
274 COG1162 Predicted GTPases [Gen 94.4 0.047 1E-06 59.3 4.7 59 48-112 165-231 (301)
275 COG2229 Predicted GTPase [Gene 94.3 0.27 5.8E-06 49.6 9.5 129 44-204 7-147 (187)
276 KOG2203 GTP-binding protein [G 94.3 0.046 1E-06 62.7 4.5 35 38-72 27-62 (772)
277 PRK10416 signal recognition pa 94.2 0.11 2.4E-06 57.4 7.2 23 48-70 115-137 (318)
278 smart00176 RAN Ran (Ras-relate 94.2 0.28 6E-06 50.5 9.6 20 53-72 1-20 (200)
279 PRK06995 flhF flagellar biosyn 94.1 0.16 3.4E-06 59.1 8.5 54 169-225 381-434 (484)
280 KOG1954 Endocytosis/signaling 94.0 0.15 3.1E-06 56.4 7.4 29 45-74 56-84 (532)
281 PRK12726 flagellar biosynthesi 94.0 0.27 6E-06 55.4 9.8 23 48-70 207-229 (407)
282 PRK00771 signal recognition pa 93.7 0.18 3.9E-06 58.1 7.9 49 167-217 219-267 (437)
283 PRK12723 flagellar biosynthesi 93.5 0.32 6.9E-06 55.2 9.4 23 48-70 175-197 (388)
284 cd00071 GMPK Guanosine monopho 93.5 0.068 1.5E-06 51.5 3.5 33 50-84 2-38 (137)
285 COG3840 ThiQ ABC-type thiamine 93.4 0.057 1.2E-06 54.6 2.9 29 48-77 26-54 (231)
286 PF13555 AAA_29: P-loop contai 93.4 0.07 1.5E-06 44.6 3.0 20 49-68 25-44 (62)
287 COG4107 PhnK ABC-type phosphon 93.4 0.056 1.2E-06 54.1 2.8 33 47-81 32-64 (258)
288 PF00005 ABC_tran: ABC transpo 93.4 0.06 1.3E-06 51.0 3.0 23 49-71 13-35 (137)
289 cd01859 MJ1464 MJ1464. This f 93.3 0.2 4.3E-06 48.9 6.6 46 24-74 83-128 (156)
290 KOG0410 Predicted GTP binding 93.3 0.11 2.5E-06 56.4 5.1 43 43-85 174-216 (410)
291 PRK14974 cell division protein 93.2 0.22 4.7E-06 55.4 7.5 48 167-216 266-313 (336)
292 COG0536 Obg Predicted GTPase [ 93.2 0.54 1.2E-05 51.8 10.1 34 50-85 162-197 (369)
293 PRK12724 flagellar biosynthesi 93.1 0.21 4.6E-06 56.9 7.2 22 49-70 225-246 (432)
294 TIGR03263 guanyl_kin guanylate 93.1 0.084 1.8E-06 52.6 3.6 22 49-70 3-24 (180)
295 KOG0091 GTPase Rab39, small G 93.0 0.31 6.6E-06 48.3 7.1 24 49-72 10-33 (213)
296 PF00448 SRP54: SRP54-type pro 92.9 0.079 1.7E-06 54.4 3.2 22 49-70 3-24 (196)
297 COG1101 PhnK ABC-type uncharac 92.9 0.077 1.7E-06 55.0 3.0 24 48-71 33-56 (263)
298 cd03225 ABC_cobalt_CbiO_domain 92.6 0.085 1.8E-06 54.1 3.0 29 49-79 29-57 (211)
299 PRK10867 signal recognition pa 92.6 0.33 7.2E-06 55.8 8.0 50 166-217 226-275 (433)
300 cd04103 Centaurin_gamma Centau 92.6 0.099 2.1E-06 51.4 3.3 26 49-74 2-27 (158)
301 TIGR01166 cbiO cobalt transpor 92.6 0.086 1.9E-06 53.3 2.9 23 49-71 20-42 (190)
302 PTZ00327 eukaryotic translatio 92.5 0.23 5E-06 57.6 6.6 23 49-71 36-58 (460)
303 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.5 0.085 1.9E-06 54.4 2.8 28 49-78 32-59 (218)
304 KOG1489 Predicted GTP-binding 92.5 0.25 5.5E-06 53.8 6.3 37 47-85 196-234 (366)
305 cd03261 ABC_Org_Solvent_Resist 92.5 0.085 1.8E-06 55.2 2.8 23 49-71 28-50 (235)
306 PF03205 MobB: Molybdopterin g 92.4 0.098 2.1E-06 50.8 3.0 23 48-70 1-23 (140)
307 cd03264 ABC_drug_resistance_li 92.4 0.091 2E-06 54.0 2.8 28 49-78 27-54 (211)
308 PRK00300 gmk guanylate kinase; 92.4 0.11 2.3E-06 53.1 3.3 36 49-84 7-43 (205)
309 cd03224 ABC_TM1139_LivF_branch 92.3 0.095 2.1E-06 54.2 2.9 23 49-71 28-50 (222)
310 cd03114 ArgK-like The function 92.3 0.75 1.6E-05 45.0 9.0 21 50-70 2-22 (148)
311 cd03263 ABC_subfamily_A The AB 92.3 0.097 2.1E-06 54.1 2.9 28 49-78 30-57 (220)
312 cd03218 ABC_YhbG The ABC trans 92.2 0.1 2.2E-06 54.4 2.9 23 49-71 28-50 (232)
313 COG0410 LivF ABC-type branched 92.2 0.1 2.2E-06 54.5 2.8 23 49-71 31-53 (237)
314 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.2 0.1 2.2E-06 50.7 2.7 29 49-79 28-56 (144)
315 cd03269 ABC_putative_ATPase Th 92.1 0.1 2.2E-06 53.6 2.8 23 49-71 28-50 (210)
316 cd03266 ABC_NatA_sodium_export 92.1 0.1 2.2E-06 53.8 2.9 28 49-78 33-60 (218)
317 TIGR02673 FtsE cell division A 92.1 0.11 2.3E-06 53.5 2.9 23 49-71 30-52 (214)
318 COG1116 TauB ABC-type nitrate/ 92.0 0.13 2.7E-06 54.5 3.3 28 48-76 30-57 (248)
319 COG5256 TEF1 Translation elong 92.0 0.071 1.5E-06 59.9 1.5 60 132-194 70-159 (428)
320 cd03215 ABC_Carb_Monos_II This 92.0 0.11 2.5E-06 52.1 2.9 30 48-79 27-56 (182)
321 TIGR00960 3a0501s02 Type II (G 92.0 0.11 2.3E-06 53.7 2.8 24 48-71 30-53 (216)
322 PRK13541 cytochrome c biogenes 91.9 0.11 2.5E-06 52.7 2.8 28 49-78 28-55 (195)
323 cd03226 ABC_cobalt_CbiO_domain 91.9 0.11 2.4E-06 53.1 2.8 24 48-71 27-50 (205)
324 PF05879 RHD3: Root hair defec 91.9 0.086 1.9E-06 64.6 2.3 24 53-77 1-24 (742)
325 PRK11629 lolD lipoprotein tran 91.9 0.11 2.3E-06 54.5 2.6 23 49-71 37-59 (233)
326 cd03259 ABC_Carb_Solutes_like 91.9 0.11 2.4E-06 53.4 2.8 23 49-71 28-50 (213)
327 cd03265 ABC_DrrA DrrA is the A 91.8 0.11 2.4E-06 53.7 2.8 23 49-71 28-50 (220)
328 cd03293 ABC_NrtD_SsuB_transpor 91.8 0.11 2.5E-06 53.7 2.8 23 49-71 32-54 (220)
329 TIGR02315 ABC_phnC phosphonate 91.8 0.11 2.5E-06 54.4 2.8 23 49-71 30-52 (243)
330 cd01130 VirB11-like_ATPase Typ 91.8 0.11 2.5E-06 52.5 2.6 29 49-79 27-55 (186)
331 cd03256 ABC_PhnC_transporter A 91.7 0.12 2.6E-06 54.1 2.9 23 49-71 29-51 (241)
332 cd03222 ABC_RNaseL_inhibitor T 91.7 0.12 2.5E-06 52.3 2.7 29 48-78 26-54 (177)
333 cd03258 ABC_MetN_methionine_tr 91.7 0.13 2.7E-06 53.8 3.0 28 49-78 33-60 (233)
334 cd03262 ABC_HisP_GlnQ_permease 91.7 0.13 2.8E-06 52.9 3.0 28 49-78 28-55 (213)
335 PRK15177 Vi polysaccharide exp 91.7 0.14 3E-06 53.1 3.2 31 49-81 15-45 (213)
336 PF13521 AAA_28: AAA domain; P 91.6 0.11 2.4E-06 51.2 2.2 22 49-70 1-22 (163)
337 cd03229 ABC_Class3 This class 91.6 0.13 2.8E-06 51.6 2.8 28 49-78 28-55 (178)
338 cd03292 ABC_FtsE_transporter F 91.6 0.12 2.6E-06 53.1 2.6 23 49-71 29-51 (214)
339 PRK13540 cytochrome c biogenes 91.6 0.13 2.8E-06 52.5 2.9 25 47-71 27-51 (200)
340 cd03219 ABC_Mj1267_LivG_branch 91.6 0.13 2.7E-06 53.9 2.8 28 49-78 28-55 (236)
341 cd03249 ABC_MTABC3_MDL1_MDL2 M 91.6 0.13 2.7E-06 54.0 2.8 29 49-79 31-59 (238)
342 cd03254 ABCC_Glucan_exporter_l 91.6 0.13 2.8E-06 53.5 2.9 29 49-79 31-59 (229)
343 cd04129 Rho2 Rho2 subfamily. 91.5 0.18 3.8E-06 50.7 3.8 24 49-72 3-26 (187)
344 cd03230 ABC_DR_subfamily_A Thi 91.5 0.13 2.9E-06 51.2 2.9 23 49-71 28-50 (173)
345 PRK15112 antimicrobial peptide 91.5 0.13 2.8E-06 55.1 2.9 28 49-78 41-68 (267)
346 cd00267 ABC_ATPase ABC (ATP-bi 91.5 0.14 3E-06 50.1 2.8 32 48-81 26-57 (157)
347 cd03369 ABCC_NFT1 Domain 2 of 91.5 0.13 2.9E-06 52.6 2.8 30 48-79 35-64 (207)
348 cd03115 SRP The signal recogni 91.4 0.49 1.1E-05 46.9 6.8 22 49-70 2-23 (173)
349 cd03216 ABC_Carb_Monos_I This 91.4 0.14 3E-06 50.7 2.8 24 48-71 27-50 (163)
350 TIGR03608 L_ocin_972_ABC putat 91.3 0.14 3E-06 52.3 2.8 23 49-71 26-48 (206)
351 cd03231 ABC_CcmA_heme_exporter 91.3 0.15 3.2E-06 52.2 2.9 29 48-78 27-55 (201)
352 cd03278 ABC_SMC_barmotin Barmo 91.3 0.1 2.3E-06 53.4 1.8 23 48-70 23-45 (197)
353 cd03235 ABC_Metallic_Cations A 91.3 0.14 3.1E-06 52.6 2.9 23 49-71 27-49 (213)
354 cd03257 ABC_NikE_OppD_transpor 91.3 0.15 3.2E-06 52.9 3.0 29 48-78 32-60 (228)
355 PRK13768 GTPase; Provisional 91.3 0.52 1.1E-05 50.3 7.2 22 49-70 4-25 (253)
356 COG3910 Predicted ATPase [Gene 91.3 0.22 4.8E-06 50.6 4.0 46 26-78 23-69 (233)
357 PRK10895 lipopolysaccharide AB 91.3 0.14 3.1E-06 53.7 2.9 29 48-78 30-58 (241)
358 TIGR01978 sufC FeS assembly AT 91.3 0.15 3.3E-06 53.4 3.1 23 49-71 28-50 (243)
359 PRK14250 phosphate ABC transpo 91.3 0.14 3.1E-06 53.8 2.9 28 49-78 31-58 (241)
360 cd03298 ABC_ThiQ_thiamine_tran 91.3 0.15 3.2E-06 52.4 2.9 29 48-78 25-53 (211)
361 PRK11124 artP arginine transpo 91.2 0.14 3E-06 53.8 2.8 29 48-78 29-57 (242)
362 cd03268 ABC_BcrA_bacitracin_re 91.2 0.14 3.1E-06 52.4 2.7 23 49-71 28-50 (208)
363 TIGR02211 LolD_lipo_ex lipopro 91.2 0.15 3.3E-06 52.7 2.9 24 48-71 32-55 (221)
364 cd03236 ABC_RNaseL_inhibitor_d 91.2 0.16 3.4E-06 54.4 3.0 32 47-80 26-57 (255)
365 cd03301 ABC_MalK_N The N-termi 91.2 0.15 3.2E-06 52.5 2.8 23 49-71 28-50 (213)
366 cd03260 ABC_PstB_phosphate_tra 91.1 0.13 2.8E-06 53.5 2.4 23 49-71 28-50 (227)
367 KOG0446 Vacuolar sorting prote 91.1 0.17 3.6E-06 61.1 3.5 235 45-300 184-454 (657)
368 PRK13543 cytochrome c biogenes 91.1 0.16 3.5E-06 52.5 3.0 29 49-79 39-67 (214)
369 TIGR03864 PQQ_ABC_ATP ABC tran 91.1 0.15 3.2E-06 53.5 2.7 23 49-71 29-51 (236)
370 TIGR03410 urea_trans_UrtE urea 91.1 0.16 3.4E-06 53.0 2.9 24 48-71 27-50 (230)
371 cd03245 ABCC_bacteriocin_expor 91.1 0.16 3.5E-06 52.5 3.0 29 49-79 32-60 (220)
372 PRK13641 cbiO cobalt transport 91.1 0.15 3.2E-06 55.4 2.8 28 49-78 35-62 (287)
373 cd03246 ABCC_Protease_Secretio 91.1 0.16 3.4E-06 50.7 2.8 30 48-79 29-58 (173)
374 PRK13651 cobalt transporter AT 91.1 0.15 3.2E-06 56.0 2.9 29 49-79 35-63 (305)
375 PRK11248 tauB taurine transpor 91.1 0.16 3.4E-06 54.2 2.9 23 49-71 29-51 (255)
376 cd03217 ABC_FeS_Assembly ABC-t 91.0 0.17 3.6E-06 51.8 3.0 24 48-71 27-50 (200)
377 COG5019 CDC3 Septin family pro 91.0 1.8 4E-05 48.2 11.1 130 49-195 25-177 (373)
378 TIGR02324 CP_lyasePhnL phospho 91.0 0.17 3.6E-06 52.6 3.0 24 48-71 35-58 (224)
379 PRK10584 putative ABC transpor 91.0 0.16 3.4E-06 52.9 2.8 24 48-71 37-60 (228)
380 PRK13539 cytochrome c biogenes 91.0 0.17 3.6E-06 52.1 2.9 29 48-78 29-57 (207)
381 cd03223 ABCD_peroxisomal_ALDP 91.0 0.17 3.8E-06 50.2 3.0 28 49-78 29-56 (166)
382 cd03253 ABCC_ATM1_transporter 91.0 0.16 3.5E-06 53.1 2.9 29 48-78 28-56 (236)
383 TIGR02323 CP_lyasePhnK phospho 90.9 0.16 3.5E-06 53.7 2.9 29 48-78 30-58 (253)
384 CHL00131 ycf16 sulfate ABC tra 90.9 0.17 3.7E-06 53.4 3.1 23 48-70 34-56 (252)
385 cd03273 ABC_SMC2_euk Eukaryoti 90.9 0.18 3.8E-06 53.6 3.1 27 44-70 22-48 (251)
386 COG0194 Gmk Guanylate kinase [ 90.9 0.16 3.5E-06 51.5 2.6 35 49-83 6-40 (191)
387 cd03300 ABC_PotA_N PotA is an 90.9 0.16 3.4E-06 53.1 2.7 29 48-78 27-55 (232)
388 TIGR01184 ntrCD nitrate transp 90.8 0.17 3.8E-06 52.8 3.0 23 49-71 13-35 (230)
389 PRK13645 cbiO cobalt transport 90.8 0.17 3.7E-06 54.8 3.0 28 49-78 39-66 (289)
390 cd03295 ABC_OpuCA_Osmoprotecti 90.7 0.18 3.8E-06 53.1 3.0 28 49-78 29-56 (242)
391 COG1120 FepC ABC-type cobalami 90.7 0.2 4.3E-06 53.6 3.3 22 49-70 30-51 (258)
392 TIGR00968 3a0106s01 sulfate AB 90.7 0.17 3.7E-06 53.2 2.8 29 49-79 28-56 (237)
393 cd03297 ABC_ModC_molybdenum_tr 90.7 0.18 3.9E-06 51.9 3.0 24 48-71 24-47 (214)
394 PRK13635 cbiO cobalt transport 90.7 0.17 3.7E-06 54.7 2.8 28 49-78 35-62 (279)
395 PRK10908 cell division protein 90.7 0.17 3.6E-06 52.5 2.7 29 48-78 29-57 (222)
396 cd03228 ABCC_MRP_Like The MRP 90.7 0.19 4E-06 50.1 2.9 29 48-78 29-57 (171)
397 cd03251 ABCC_MsbA MsbA is an e 90.7 0.17 3.8E-06 52.7 2.8 28 49-78 30-57 (234)
398 PRK13538 cytochrome c biogenes 90.7 0.18 4E-06 51.6 2.9 24 48-71 28-51 (204)
399 TIGR00959 ffh signal recogniti 90.7 0.71 1.5E-05 53.1 7.9 50 166-217 225-274 (428)
400 cd03232 ABC_PDR_domain2 The pl 90.6 0.19 4.1E-06 51.0 3.0 31 48-78 34-64 (192)
401 cd03252 ABCC_Hemolysin The ABC 90.6 0.18 3.9E-06 52.7 2.9 23 49-71 30-52 (237)
402 cd03296 ABC_CysA_sulfate_impor 90.6 0.17 3.8E-06 53.0 2.7 23 49-71 30-52 (239)
403 cd03247 ABCC_cytochrome_bd The 90.6 0.19 4.2E-06 50.3 2.9 28 49-78 30-57 (178)
404 TIGR03740 galliderm_ABC gallid 90.5 0.18 3.9E-06 52.3 2.7 29 48-78 27-55 (223)
405 cd03233 ABC_PDR_domain1 The pl 90.5 0.17 3.7E-06 51.9 2.5 23 49-71 35-57 (202)
406 COG4559 ABC-type hemin transpo 90.5 0.2 4.2E-06 52.0 2.9 39 150-190 162-201 (259)
407 PRK13643 cbiO cobalt transport 90.5 0.18 3.8E-06 54.8 2.8 28 49-78 34-61 (288)
408 cd03250 ABCC_MRP_domain1 Domai 90.5 0.19 4.2E-06 51.3 2.9 29 49-79 33-61 (204)
409 PRK10247 putative ABC transpor 90.5 0.19 4.1E-06 52.4 2.9 23 49-71 35-57 (225)
410 COG1126 GlnQ ABC-type polar am 90.5 0.23 4.9E-06 51.6 3.4 64 148-219 155-218 (240)
411 PRK11247 ssuB aliphatic sulfon 90.5 0.18 3.8E-06 54.0 2.7 24 48-71 39-62 (257)
412 cd03214 ABC_Iron-Siderophores_ 90.5 0.2 4.3E-06 50.3 2.9 30 48-79 26-55 (180)
413 PRK13632 cbiO cobalt transport 90.5 0.18 4E-06 54.1 2.8 24 48-71 36-59 (271)
414 KOG2655 Septin family protein 90.5 1.6 3.4E-05 48.9 10.1 133 48-197 22-175 (366)
415 PRK14737 gmk guanylate kinase; 90.4 0.27 5.8E-06 50.1 3.8 22 49-70 6-27 (186)
416 PRK13638 cbiO cobalt transport 90.4 0.18 4E-06 54.0 2.8 28 49-78 29-56 (271)
417 PRK10253 iron-enterobactin tra 90.4 0.19 4E-06 53.8 2.8 29 48-78 34-62 (265)
418 PRK13652 cbiO cobalt transport 90.4 0.18 4E-06 54.3 2.7 28 49-78 32-59 (277)
419 cd03291 ABCC_CFTR1 The CFTR su 90.4 0.21 4.5E-06 54.3 3.1 30 49-80 65-94 (282)
420 TIGR01277 thiQ thiamine ABC tr 90.4 0.2 4.3E-06 51.7 2.9 29 48-78 25-53 (213)
421 TIGR01189 ccmA heme ABC export 90.3 0.23 5E-06 50.5 3.3 24 48-71 27-50 (198)
422 cd03294 ABC_Pro_Gly_Bertaine T 90.3 0.19 4.1E-06 53.9 2.8 23 49-71 52-74 (269)
423 TIGR02769 nickel_nikE nickel i 90.3 0.19 4.2E-06 53.7 2.9 24 48-71 38-61 (265)
424 COG3638 ABC-type phosphate/pho 90.3 0.23 5E-06 52.2 3.2 29 48-78 31-59 (258)
425 PRK10575 iron-hydroxamate tran 90.2 0.2 4.4E-06 53.6 2.9 23 49-71 39-61 (265)
426 cd03237 ABC_RNaseL_inhibitor_d 90.2 0.22 4.7E-06 52.9 3.1 23 49-71 27-49 (246)
427 KOG0093 GTPase Rab3, small G p 90.2 2.4 5.1E-05 41.5 9.7 27 48-74 22-48 (193)
428 TIGR03411 urea_trans_UrtD urea 90.2 0.21 4.6E-06 52.4 3.0 23 49-71 30-52 (242)
429 PRK13648 cbiO cobalt transport 90.2 0.2 4.2E-06 53.8 2.8 23 49-71 37-59 (269)
430 PRK13639 cbiO cobalt transport 90.2 0.2 4.3E-06 54.0 2.8 29 49-79 30-58 (275)
431 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 90.2 0.19 4.2E-06 52.3 2.6 24 48-71 49-72 (224)
432 PRK13633 cobalt transporter AT 90.2 0.2 4.4E-06 54.1 2.9 28 49-78 38-65 (280)
433 COG1121 ZnuC ABC-type Mn/Zn tr 90.2 0.21 4.6E-06 53.2 2.9 31 49-81 32-62 (254)
434 TIGR03771 anch_rpt_ABC anchore 90.1 0.21 4.6E-06 52.0 2.9 23 49-71 8-30 (223)
435 COG0532 InfB Translation initi 90.1 1.1 2.3E-05 52.2 8.6 118 45-195 3-122 (509)
436 PRK11264 putative amino-acid A 90.1 0.2 4.4E-06 52.8 2.7 23 49-71 31-53 (250)
437 TIGR01360 aden_kin_iso1 adenyl 90.1 0.21 4.7E-06 49.8 2.8 23 46-68 2-24 (188)
438 PRK10619 histidine/lysine/argi 90.1 0.2 4.4E-06 53.2 2.7 28 49-78 33-60 (257)
439 COG0480 FusA Translation elong 90.1 0.85 1.8E-05 55.4 8.2 114 46-195 9-143 (697)
440 cd03244 ABCC_MRP_domain2 Domai 90.0 0.22 4.8E-06 51.5 2.9 28 49-78 32-59 (221)
441 PF05621 TniB: Bacterial TniB 90.0 0.58 1.3E-05 51.1 6.1 60 26-89 43-102 (302)
442 PRK11300 livG leucine/isoleuci 90.0 0.21 4.6E-06 52.8 2.8 24 48-71 32-55 (255)
443 PRK11614 livF leucine/isoleuci 90.0 0.22 4.8E-06 52.2 2.9 23 49-71 33-55 (237)
444 PRK13546 teichoic acids export 89.9 0.21 4.6E-06 53.6 2.7 30 48-79 51-80 (264)
445 PRK11701 phnK phosphonate C-P 89.9 0.23 5E-06 52.8 2.9 24 48-71 33-56 (258)
446 PRK13631 cbiO cobalt transport 89.8 0.23 4.9E-06 54.9 3.0 29 49-79 54-82 (320)
447 TIGR03873 F420-0_ABC_ATP propo 89.8 0.23 5E-06 52.7 2.9 28 49-78 29-56 (256)
448 COG3839 MalK ABC-type sugar tr 89.8 0.24 5.1E-06 55.0 3.0 28 49-77 31-58 (338)
449 KOG1490 GTP-binding protein CR 89.8 1.8 3.8E-05 50.1 9.8 28 44-71 165-192 (620)
450 PRK09580 sufC cysteine desulfu 89.8 0.23 4.9E-06 52.3 2.8 24 48-71 28-51 (248)
451 cd03248 ABCC_TAP TAP, the Tran 89.7 0.23 5E-06 51.6 2.8 23 49-71 42-64 (226)
452 cd01875 RhoG RhoG subfamily. 89.7 0.28 6E-06 49.7 3.3 25 48-72 4-28 (191)
453 TIGR03005 ectoine_ehuA ectoine 89.7 0.23 5E-06 52.6 2.8 23 49-71 28-50 (252)
454 PRK13647 cbiO cobalt transport 89.6 0.23 4.9E-06 53.5 2.7 29 48-78 32-60 (274)
455 cd03290 ABCC_SUR1_N The SUR do 89.6 0.29 6.2E-06 50.6 3.4 24 48-71 28-51 (218)
456 PRK13636 cbiO cobalt transport 89.6 0.23 5E-06 53.7 2.8 29 49-79 34-62 (283)
457 TIGR00064 ftsY signal recognit 89.6 0.82 1.8E-05 49.4 6.9 22 49-70 74-95 (272)
458 TIGR02982 heterocyst_DevA ABC 89.6 0.28 6E-06 50.9 3.2 28 49-78 33-60 (220)
459 PRK15056 manganese/iron transp 89.6 0.23 5.1E-06 53.3 2.7 25 47-71 33-57 (272)
460 PRK09493 glnQ glutamine ABC tr 89.5 0.24 5.1E-06 52.0 2.7 23 49-71 29-51 (240)
461 PRK13637 cbiO cobalt transport 89.5 0.24 5.2E-06 53.8 2.8 23 49-71 35-57 (287)
462 PRK11831 putative ABC transpor 89.5 0.25 5.4E-06 53.0 2.9 23 49-71 35-57 (269)
463 PRK10771 thiQ thiamine transpo 89.4 0.27 5.7E-06 51.4 2.9 23 49-71 27-49 (232)
464 PRK11231 fecE iron-dicitrate t 89.3 0.26 5.7E-06 52.3 2.9 28 49-78 30-57 (255)
465 PRK09544 znuC high-affinity zi 89.3 0.25 5.4E-06 52.6 2.7 23 49-71 32-54 (251)
466 PRK13649 cbiO cobalt transport 89.3 0.29 6.2E-06 52.8 3.2 23 49-71 35-57 (280)
467 COG4988 CydD ABC-type transpor 89.2 0.3 6.6E-06 57.1 3.5 29 48-78 348-376 (559)
468 PRK13548 hmuV hemin importer A 89.2 0.27 5.9E-06 52.4 2.9 23 49-71 30-52 (258)
469 PRK13646 cbiO cobalt transport 89.2 0.27 5.8E-06 53.3 2.9 23 49-71 35-57 (286)
470 PRK14738 gmk guanylate kinase; 89.2 0.35 7.6E-06 49.9 3.6 22 49-70 15-36 (206)
471 PRK13547 hmuV hemin importer A 89.2 0.26 5.7E-06 53.1 2.8 23 49-71 29-51 (272)
472 PRK10078 ribose 1,5-bisphospho 89.1 0.28 6.2E-06 49.5 2.8 23 49-71 4-26 (186)
473 PRK13644 cbiO cobalt transport 89.1 0.28 6E-06 52.9 2.9 28 49-78 30-57 (274)
474 cd03275 ABC_SMC1_euk Eukaryoti 89.0 0.25 5.3E-06 52.4 2.4 24 48-71 23-46 (247)
475 PF13191 AAA_16: AAA ATPase do 88.9 0.41 8.9E-06 47.3 3.8 40 28-70 8-47 (185)
476 TIGR01188 drrA daunorubicin re 88.8 0.28 6.2E-06 53.6 2.8 23 49-71 21-43 (302)
477 PRK13642 cbiO cobalt transport 88.8 0.3 6.4E-06 52.7 2.9 29 48-78 34-62 (277)
478 cd03288 ABCC_SUR2 The SUR doma 88.8 0.3 6.6E-06 52.0 2.9 28 49-78 49-76 (257)
479 TIGR00972 3a0107s01c2 phosphat 88.8 0.28 6.1E-06 51.7 2.6 23 49-71 29-51 (247)
480 TIGR01288 nodI ATP-binding ABC 88.8 0.29 6.2E-06 53.6 2.8 23 49-71 32-54 (303)
481 PRK10751 molybdopterin-guanine 88.7 0.3 6.4E-06 49.3 2.6 26 45-70 4-29 (173)
482 PRK14262 phosphate ABC transpo 88.7 0.3 6.6E-06 51.5 2.8 23 49-71 31-53 (250)
483 PTZ00132 GTP-binding nuclear p 88.6 0.38 8.1E-06 49.5 3.4 27 44-70 6-33 (215)
484 PRK14247 phosphate ABC transpo 88.6 0.31 6.8E-06 51.4 2.8 23 49-71 31-53 (250)
485 PRK14239 phosphate transporter 88.6 0.32 6.9E-06 51.4 2.9 22 49-70 33-54 (252)
486 PRK14241 phosphate transporter 88.6 0.32 6.8E-06 51.8 2.8 23 49-71 32-54 (258)
487 PRK13851 type IV secretion sys 88.5 0.3 6.5E-06 54.6 2.7 32 48-81 163-194 (344)
488 cd03213 ABCG_EPDR ABCG transpo 88.5 0.32 6.9E-06 49.5 2.7 24 48-71 36-59 (194)
489 PRK13634 cbiO cobalt transport 88.5 0.31 6.7E-06 53.0 2.8 28 49-78 35-62 (290)
490 TIGR03348 VI_IcmF type VI secr 88.5 1.7 3.7E-05 56.3 9.8 52 24-77 82-139 (1169)
491 PRK10419 nikE nickel transport 88.5 0.32 7E-06 52.1 2.9 24 48-71 39-62 (268)
492 PRK14269 phosphate ABC transpo 88.4 0.33 7.1E-06 51.2 2.8 24 48-71 29-52 (246)
493 PF00025 Arf: ADP-ribosylation 88.4 0.37 8E-06 48.2 3.0 26 46-71 13-38 (175)
494 PRK14273 phosphate ABC transpo 88.3 0.34 7.3E-06 51.4 2.9 24 48-71 34-57 (254)
495 TIGR02770 nickel_nikD nickel i 88.3 0.35 7.5E-06 50.5 2.9 23 49-71 14-36 (230)
496 PF13304 AAA_21: AAA domain; P 88.3 0.14 3.1E-06 51.9 0.0 20 51-70 3-22 (303)
497 PRK10851 sulfate/thiosulfate t 88.3 0.33 7.2E-06 54.4 2.9 28 49-78 30-57 (353)
498 PRK14261 phosphate ABC transpo 88.3 0.34 7.4E-06 51.3 2.9 23 49-71 34-56 (253)
499 cd03267 ABC_NatA_like Similar 88.2 0.39 8.5E-06 50.4 3.3 23 49-71 49-71 (236)
500 PRK13650 cbiO cobalt transport 88.2 0.34 7.5E-06 52.3 2.9 24 48-71 34-57 (279)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=6.7e-109 Score=961.36 Aligned_cols=615 Identities=40% Similarity=0.576 Sum_probs=548.4
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCc-ccc
Q 003841 20 PLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTD-EEY 98 (792)
Q Consensus 20 ~~~~~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~-~~~ 98 (792)
++++.++|++|++||.|..+|.+..+++|+|||||+||+|||||||+|+|++|||||+|+|||||++++|.+.... .+|
T Consensus 2 ~~~~~li~~vn~lqd~~~~l~~~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~ 81 (657)
T KOG0446|consen 2 GLMRLLIPLSNPLQDKLEILGSSSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEE 81 (657)
T ss_pred chhhhccccchHHHHHHHHhcCCCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccc
Confidence 4678899999999999999997788999999999999999999999999999999999999999999999998643 689
Q ss_pred eeec-cCCCccccChhHHHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecC---------------------
Q 003841 99 GEFL-HLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLP--------------------- 156 (792)
Q Consensus 99 ~~~~-~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLP--------------------- 156 (792)
++|. |.++..++||++++++|+.+|++..|.++++|+.+|.|+|++|+|++|||||||
T Consensus 82 ~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~m 161 (657)
T KOG0446|consen 82 ASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSM 161 (657)
T ss_pred hhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHH
Confidence 9999 999999999999999999999999999999999999999999999999999999
Q ss_pred --------------CCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCcccccCeeEEecCCh
Q 003841 157 --------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQ 222 (792)
Q Consensus 157 --------------V~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L~lGy~~V~nrsq 222 (792)
|.|||.|++|++|+++|++|||.|.|||||+||+|+||+||+++++|.|+.+++++||++|+||+|
T Consensus 162 i~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~g~v~vvnR~q 241 (657)
T KOG0446|consen 162 IEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKVGYVGVVNRSQ 241 (657)
T ss_pred HHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCccccccceeeeeccch
Confidence 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCHHHHHHHHHHhhcCCCCCCCcccccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 003841 223 EDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITE 302 (792)
Q Consensus 223 ~di~~~~s~~ea~~~E~~fF~~~~~~~~l~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~~lg~~~~ 302 (792)
+||+.++++.+++..|+.||.+||.|+.+..++|+++|+++|+..|..||+++||.|+.+|+.++.++++||..||. ..
T Consensus 242 ~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~~~g~-~~ 320 (657)
T KOG0446|consen 242 SIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDELNRIGA-VD 320 (657)
T ss_pred hhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcc-cC
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999997 33
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhhccCCccccccccccccchHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHhhcCCCC
Q 003841 303 SKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKS 382 (792)
Q Consensus 303 ~~~~~~~~L~~~i~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~F~~~l~~~~~~~~l~~~dI~~~I~n~~G~~~ 382 (792)
........++.+++.|+..|...+.|..+...+.+++|||||+|+|++.|...+..++|++.+...+|++++.|++|+++
T Consensus 321 ~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i~~~~G~~~ 400 (657)
T KOG0446|consen 321 VDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLVSEASGIRP 400 (657)
T ss_pred CccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHHHhccCCCc
Confidence 34456788999999999999999999987655789999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhhhc-ccccchhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 003841 383 ALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVN-ELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHI 461 (792)
Q Consensus 383 plFvp~~~Fe~Lvr~qI~~l~~Pal~cv~~V~~eL~~iv~~~~~~-e~~rfp~L~~~i~~vv~~~L~~~~~~a~~~I~~L 461 (792)
++|+|+.+||.+|++||+++++||++|++.|+++|.+++++|... +|.|||.|++++.+++.+++++++.+++++|.++
T Consensus 401 ~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~~l~rfp~l~~~~~~~~~~~~~~~~~~t~~~v~~~ 480 (657)
T KOG0446|consen 401 SLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRATELKRFPVLYSELVEIASSLIAEGLDETKKAVKNL 480 (657)
T ss_pred cccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876 8999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCCCccchH-HHHHHHHhhhhcCCCCCccccCCCCCCCCCCCcchhhhhHHHHHhhhcccccCCCCCcc
Q 003841 462 IEMEMDYINTSHPNFIGGSK-AVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGVRPT 540 (792)
Q Consensus 462 i~~E~~yInT~hpdF~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 540 (792)
|+||.+||||+||||+++.+ |+...... +.+ .. +++. +.
T Consensus 481 i~~e~~yinT~h~df~~~~~~al~~~~~~--~~~-------~~-------------------------~~~~-~~----- 520 (657)
T KOG0446|consen 481 IDLEQSYLNTDHPDFRSLTDSALSSVTSP--SIA-------AM-------------------------KLIS-AQ----- 520 (657)
T ss_pred HHHHHHHhcCcChhhhhhHHHHHHHhhcc--ccc-------cc-------------------------cccc-cc-----
Confidence 99999999999999999875 43322110 000 00 0000 00
Q ss_pred hhhcccCCCCCCCCCCCccccccCCCCCCCCCCCCccCCCCCCCCchhhhhHHhhhhcCCCCccCCCCCCCchhHHHHHH
Q 003841 541 VEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSEQENVEIA 620 (792)
Q Consensus 541 ~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~~~~~~s~~e~~ei~ 620 (792)
. . .......++....+.+. .....+...+..+......++++..+++
T Consensus 521 ----~-~--~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (657)
T KOG0446|consen 521 ----L-L--KEELGECNSALKAIKNA--------------------------VGSIRLDPSDIVLSRALVLKKRECKETE 567 (657)
T ss_pred ----c-c--ccccccccchhhhhcch--------------------------hhhhhhcccchhhhhhhhcchhhhHHHH
Confidence 0 0 00000000000001000 0001222333444444566778889999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 003841 621 VTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYR-ENLFEEMLQEPEEVAMKRKRTRDTLRVLQQAF 699 (792)
Q Consensus 621 ~ir~Lv~SYF~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~LY~-~~~~~eLL~E~~~Ia~kR~~l~~~l~~LkqA~ 699 (792)
.|+.++.|||+||+|+|+|+|||+|||||||.+++.||++|+++||+ .+.+++||+|+|.|+++|+.|++|+++|++|.
T Consensus 568 ~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~~~~~~~~ll~E~~~i~~~R~~~~~~l~~L~~a~ 647 (657)
T KOG0446|consen 568 EISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYAGDEQLESLLKEDPRIKRRRELQQKRLLALQKAL 647 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHcccccc
Q 003841 700 RTLDELPLE 708 (792)
Q Consensus 700 ~iL~ev~~~ 708 (792)
.+|..+.+.
T Consensus 648 ~ii~~~~~~ 656 (657)
T KOG0446|consen 648 SILATVAQA 656 (657)
T ss_pred HHHHHHhcc
Confidence 999988653
No 2
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=9.4e-61 Score=516.74 Aligned_cols=287 Identities=46% Similarity=0.777 Sum_probs=254.5
Q ss_pred HHHHHhCCCcccccCeeEEecCChhhhhcccCHHHHHHHHHHhhcCCCCCCCcccccChhHHHHHHHHHHHHHHHHhhHH
Q 003841 199 ARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPG 278 (792)
Q Consensus 199 ~~~il~~~~~~L~lGy~~V~nrsq~di~~~~s~~ea~~~E~~fF~~~~~~~~l~~~~Gi~~L~~~L~~~L~~~I~~~LP~ 278 (792)
+.++|.|+++||+||||+|+||||+|++.+.|+++|++.|++||++||+|+..+++|||++|+.+|+++|.+||+++||.
T Consensus 1 ~~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~ 80 (295)
T PF01031_consen 1 AMDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPS 80 (295)
T ss_dssp SHHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcH
Confidence 36899999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCC-ChhhHHHHHHHHHHHHHHHHhhhccCCcc-ccccccccccchHHHHHHHHHHHhh
Q 003841 279 LKSRISSALVSVAKEHASYGEITE-SKAGQGALLLNILSKYSEAFSSMVEGKNE-EMSTSELSGGARIHYIFQSIFVKSL 356 (792)
Q Consensus 279 l~~~I~~~l~~~~~eL~~lg~~~~-~~~~~~~~L~~~i~~f~~~~~~~i~G~~~-~~~~~~l~ggari~~~f~~~F~~~l 356 (792)
|+.+|++.|.+++.+|+.||++++ +..+++.+|++++++|++.|+++|+|.|. .....++.||+||+++|++.|...+
T Consensus 81 l~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~ 160 (295)
T PF01031_consen 81 LKSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFL 160 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhh
Confidence 999999999999999999999998 77889999999999999999999999998 4678899999999999999999999
Q ss_pred hhcCCCCCCchHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhhhcccccchhHH
Q 003841 357 EEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLR 436 (792)
Q Consensus 357 ~~~~~~~~l~~~dI~~~I~n~~G~~~plFvp~~~Fe~Lvr~qI~~l~~Pal~cv~~V~~eL~~iv~~~~~~e~~rfp~L~ 436 (792)
..+++++.+++++|+++|++++|+++|+|+|+.+|+.||++||++|++||++|++.|+++|.+++.+|+..+|.+||.|+
T Consensus 161 ~~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~ 240 (295)
T PF01031_consen 161 EKIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFERFPNLK 240 (295)
T ss_dssp HHTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHH
T ss_pred hhhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccCCCCCCCccchHHHHH
Q 003841 437 KRMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNFIGGSKAVEI 485 (792)
Q Consensus 437 ~~i~~vv~~~L~~~~~~a~~~I~~Li~~E~~yInT~hpdF~~~~~a~~~ 485 (792)
+++.+++.++++++..+|+++|++||+||++||||+||||+++..++..
T Consensus 241 ~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T~~~~f~~~~~~~~~ 289 (295)
T PF01031_consen 241 EAIKEAVQQLLEECREPAKEMIENLIDMELSYINTQHPDFLGELQAIRQ 289 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTSTT--TTS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998876644
No 3
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=3.8e-45 Score=381.41 Aligned_cols=204 Identities=64% Similarity=1.024 Sum_probs=194.9
Q ss_pred CcchHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceee
Q 003841 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEF 101 (792)
Q Consensus 22 ~~~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~ 101 (792)
++.|++++|+|++++..+|+++.+++|+|||||+||+|||||||+|+|..|+|++.|.|||||++++|++.. .+|+++
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~--~~~~~~ 78 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSS--TEYAEF 78 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCC--CcceEE
Confidence 468999999999988789999999999999999999999999999999998999999999999999999864 689999
Q ss_pred ccCCCccccChhHHHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecC-------------------------
Q 003841 102 LHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLP------------------------- 156 (792)
Q Consensus 102 ~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLP------------------------- 156 (792)
++.+++.+.||+++++.|+++++++.+.+++||+++|+|+|+||++|+|+|||||
T Consensus 79 ~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~y 158 (240)
T smart00053 79 LHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQF 158 (240)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888899999999999999999999999999
Q ss_pred ----------CCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCcccccCeeEEecCChhhhh
Q 003841 157 ----------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 226 (792)
Q Consensus 157 ----------V~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L~lGy~~V~nrsq~di~ 226 (792)
|++|+.|+++++++++|+.+||.|.|||||+||+|.+++|++|.+++.|+.++|+||||+|+||+|+|++
T Consensus 159 i~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~v~nr~~~d~~ 238 (240)
T smart00053 159 ISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGVVNRSQKDIE 238 (240)
T ss_pred HhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEEEECCChHHhh
Confidence 6789999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 003841 227 F 227 (792)
Q Consensus 227 ~ 227 (792)
+
T Consensus 239 ~ 239 (240)
T smart00053 239 G 239 (240)
T ss_pred c
Confidence 4
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=100.00 E-value=1.4e-32 Score=300.01 Aligned_cols=386 Identities=24% Similarity=0.379 Sum_probs=282.0
Q ss_pred CCcchHHHHHHHHHHHHHhCCC--CCCCCCeEEEEccCCCchhHHHHHHhCCCCccccCC-CCCcccEEEEEeeccCccc
Q 003841 21 LGGSVIPLVNKLQDIFAQLGSQ--STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEE 97 (792)
Q Consensus 21 ~~~~l~~~~nkL~d~~~~~G~~--~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~-~~TR~P~~l~l~~~~~~~~ 97 (792)
|-.+||.++...-|+++....+ ..-.||++||||+||+||+||||.|..-.++|||+| +.||.|+.+.|...+.-
T Consensus 280 lKkSLIDMYSEVLD~Ls~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyH-- 357 (980)
T KOG0447|consen 280 LKKSLIDMYSEVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHH-- 357 (980)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcch--
Confidence 4457899999999999876543 456899999999999999999999999989999997 79999999999876430
Q ss_pred ceeeccCC----CccccChhHHHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecC-----------------
Q 003841 98 YGEFLHLP----GKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLP----------------- 156 (792)
Q Consensus 98 ~~~~~~~~----g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLP----------------- 156 (792)
-+.|-+.. =.+..|+.++|.+++-.+......++.+|+.+|.+.|.||+++-+.|||||
T Consensus 358 VAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~ 437 (980)
T KOG0447|consen 358 VALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKET 437 (980)
T ss_pred hhhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHH
Confidence 01111111 013457888999998888777788899999999999999999999999999
Q ss_pred ------------------CCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCc----chHHHHHhCCCcccc-cC
Q 003841 157 ------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG----TDARNLLLGKVIPLR-LG 213 (792)
Q Consensus 157 ------------------V~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~g----t~~~~il~~~~~~L~-lG 213 (792)
+-....|-+-+..-.+...+||.|.|||.||||.|+.... ...++||.|+.+|+| ||
T Consensus 438 I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALG 517 (980)
T KOG0447|consen 438 IFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALG 517 (980)
T ss_pred HHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcc
Confidence 1233456666777889999999999999999999998752 235799999999996 99
Q ss_pred eeEEec-CChhhhhcccCHHHHHHHHHHhhcCCCCCCC--c-ccccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003841 214 YVGVVN-RSQEDIMFNRSIKDALVAEEKFFRSRPVYNG--L-ADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVS 289 (792)
Q Consensus 214 y~~V~n-rsq~di~~~~s~~ea~~~E~~fF~~~~~~~~--l-~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~ 289 (792)
||+|+. |+. ...||++.++.|++||++...++. + ++.+.+.+|.-..+.-+|..+++++-..........-.
T Consensus 518 YfaVVTGrGn----ssdSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQaDaFkAtrFN 593 (980)
T KOG0447|consen 518 YFAVVTGKGN----SSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQADSFKATRFN 593 (980)
T ss_pred eeEEEecCCC----cchhHHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999875 443 235899999999999998766653 2 57899999999999999999999999999999999999
Q ss_pred HHHHHHH-cCCCCCChh------hHHHHHHHHHHHHHHHHhhhccCCccccccccccccchH-HHHHHHHHHHhhhhcCC
Q 003841 290 VAKEHAS-YGEITESKA------GQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARI-HYIFQSIFVKSLEEVDP 361 (792)
Q Consensus 290 ~~~eL~~-lg~~~~~~~------~~~~~L~~~i~~f~~~~~~~i~G~~~~~~~~~l~ggari-~~~f~~~F~~~l~~~~~ 361 (792)
++.|.+. ++.-|.... .+...|-.+|+ .++ .--.++++.-.+.++ .|| ...|++.+......++.
T Consensus 594 LEtEWKNnfpRlRel~RdELfdKAkgEILDEvi~-lsq----v~~k~w~e~l~~~~~--e~vs~~~~~~~~lpaA~~~~s 666 (980)
T KOG0447|consen 594 LETEWKNNYPRLRELDRNELFEKAKNEILDEVIS-LSQ----VTPKHWEEILQQSLW--ERVSTHVIENIYLPAAQTMNS 666 (980)
T ss_pred hhhhhhhcChHhhhcChHHHHHHhhhhHHHHHHh-hhh----cChhhHHHHHHHHHH--HHhhhhhhhhccchhhhcccc
Confidence 9998875 444443322 12223333331 111 111111110000000 011 12233333333333344
Q ss_pred CCCCchHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 003841 362 CEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKIS 421 (792)
Q Consensus 362 ~~~l~~~dI~~~I~n~~G~~~plFvp~~~Fe~Lvr~qI~~l~~Pal~cv~~V~~eL~~iv 421 (792)
-+..+.-||+ +..+....++.-.-+.+|+.|-..+...+.+|+-+-.+.|++.|...+
T Consensus 667 g~FnttvdIk--lk~w~DKqL~~k~ve~~w~tl~e~f~r~~~~~~~k~hd~ifd~lkeav 724 (980)
T KOG0447|consen 667 GTFNTTVDIK--LKQWTDKQLPNKAVEVAWETLQEEFSRFMTEPKGKEHDDIFDKLKEAV 724 (980)
T ss_pred cccceeehhh--hhhhhhhhcchhhhHHHHHHHHHHHHHHhccccccccchHHHHHHHHH
Confidence 4445555664 445555566666668999999999999999999988999999888776
No 5
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.94 E-value=1.2e-26 Score=208.13 Aligned_cols=91 Identities=38% Similarity=0.666 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhcCCCHHHHHHHHHHHHHHHH
Q 003841 615 ENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRV 694 (792)
Q Consensus 615 e~~ei~~ir~Lv~SYF~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~LY~~~~~~eLL~E~~~Ia~kR~~l~~~l~~ 694 (792)
|..+++.|+.|+.|||+||+|+|+|+|||+|||||||.+++.||++|+++||+++.+++||+|||+|++||++|++++++
T Consensus 2 e~~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~~~~~~LL~E~~~i~~kR~~~~~~l~~ 81 (92)
T smart00302 2 EDSELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKEELLDELLEEDPEIASKRKELKKRLEL 81 (92)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccc
Q 003841 695 LQQAFRTLDEL 705 (792)
Q Consensus 695 LkqA~~iL~ev 705 (792)
|++|.++|++|
T Consensus 82 L~~A~~~l~~v 92 (92)
T smart00302 82 LKKARQIIAAV 92 (92)
T ss_pred HHHHHHHHhcC
Confidence 99999999876
No 6
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.88 E-value=1.2e-22 Score=182.40 Aligned_cols=92 Identities=43% Similarity=0.706 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhcCCCHHHHHHHHHHHHHHH
Q 003841 614 QENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLR 693 (792)
Q Consensus 614 ~e~~ei~~ir~Lv~SYF~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~LY~~~~~~eLL~E~~~Ia~kR~~l~~~l~ 693 (792)
||..+++.|+.+++|||+||+|||.|+|||+|+||||+.+++.|+.+|+..||..+.+++||+|||+|++||++|+++++
T Consensus 1 ~e~~~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~~~~~Ll~Ed~~i~~kR~~l~~~~~ 80 (92)
T PF02212_consen 1 REQREVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEEDLEELLQEDPEIAEKREELKKKLE 80 (92)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGCCCCT--GHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccc
Q 003841 694 VLQQAFRTLDEL 705 (792)
Q Consensus 694 ~LkqA~~iL~ev 705 (792)
+|++|.++|.+|
T Consensus 81 ~L~~A~~~L~~~ 92 (92)
T PF02212_consen 81 RLKKAQQILSEV 92 (92)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC
Confidence 999999999875
No 7
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.73 E-value=3.9e-17 Score=161.08 Aligned_cols=141 Identities=38% Similarity=0.491 Sum_probs=114.4
Q ss_pred EEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcc--cceeeccCCCccccChhHHHHHHHHHHHHhh
Q 003841 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDE--EYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~--~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~ 127 (792)
|+|+|.+|||||||||+|+|.+.+|.+.+.||++|++++........ .+..........+.++.++++.+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 79999999999999999999999999999999999999998765422 1111111113456788899988887776666
Q ss_pred cCCCCcCcCceEEEEecCCcceeEEeecC-------------------------CCCCCCchhhHHHHHHHhhhCCCCCe
Q 003841 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLP-------------------------VTPANSDLANSDALQIAGIADPDGYR 182 (792)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtlVDLP-------------------------V~~a~~Dl~~~~al~la~~vDp~g~R 182 (792)
+....++...+.+....+...+++|||+| |..++.++.+++...+.+.+++.+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSR 160 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSS
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCe
Confidence 55667888889999999999999999999 77889999999999999999999999
Q ss_pred EEEEeecC
Q 003841 183 TIGIITKL 190 (792)
Q Consensus 183 TIGVlTK~ 190 (792)
+|+|+||.
T Consensus 161 ~i~V~nk~ 168 (168)
T PF00350_consen 161 TIFVLNKA 168 (168)
T ss_dssp EEEEEE-G
T ss_pred EEEEEcCC
Confidence 99999994
No 8
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=99.59 E-value=4.8e-13 Score=155.84 Aligned_cols=502 Identities=26% Similarity=0.316 Sum_probs=347.1
Q ss_pred cceeeccCCCccccChhHHHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecC--------------------
Q 003841 97 EYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLP-------------------- 156 (792)
Q Consensus 97 ~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLP-------------------- 156 (792)
+|..|.+.+...+.++..++.+....+....+...++...++.+.+..+.+..++.+|.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (546)
T COG0699 2 EEFEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDEL 81 (546)
T ss_pred CcchhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHH
Confidence 566777878778889999999988888777777788999999999999999999999998
Q ss_pred ---------------CCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCcccccCeeEEecCC
Q 003841 157 ---------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRS 221 (792)
Q Consensus 157 ---------------V~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L~lGy~~V~nrs 221 (792)
...++.+.++......++..++ +.||.+.++.++++..+ +..|++.++|..
T Consensus 82 ~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 147 (546)
T COG0699 82 LDLGKIEIENALILLGIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI-------LGNGDVLVVDAL 147 (546)
T ss_pred HHhhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee-------eccccccccCch
Confidence 2344556666666667777665 77777777766543222 678888999999
Q ss_pred hhhhhcccCHHHHHHHHHHhhcCCCCCCCcccccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCC
Q 003841 222 QEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEIT 301 (792)
Q Consensus 222 q~di~~~~s~~ea~~~E~~fF~~~~~~~~l~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~~lg~~~ 301 (792)
+.++...++...+...|..+|..|+.|.+....++..++...+++++..|++...+............ .++..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~- 220 (546)
T COG0699 148 ETDIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN- 220 (546)
T ss_pred hHHHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch-
Confidence 99999888998899999999999999999888999999999999999999999999877666655543 22221
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhhccCCccccccccccccchHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHhhcCCC
Q 003841 302 ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPK 381 (792)
Q Consensus 302 ~~~~~~~~~L~~~i~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~F~~~l~~~~~~~~l~~~dI~~~I~n~~G~~ 381 (792)
.++.....|...+.. +.+|.|++.. ...+++.+.+.+..+.....+..|.+
T Consensus 221 --------~~~~~~~~~~~~~~~-------------~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~ 271 (546)
T COG0699 221 --------EVLAVIQTLLKRLSE-------------LVRGARIRLN--------IILFSDLEEVSDSPVLLKELASKGER 271 (546)
T ss_pred --------HHHHHHHHHHHHHHH-------------Hhccchhhhh--------hcccchHHHhhhhhhHHHHHcccCCC
Confidence 345555556555552 2344555543 12223333444556666667777877
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhh-hcccccchhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003841 382 SALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCL-VNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGH 460 (792)
Q Consensus 382 ~plFvp~~~Fe~Lvr~qI~~l~~Pal~cv~~V~~eL~~iv~~~~-~~e~~rfp~L~~~i~~vv~~~L~~~~~~a~~~I~~ 460 (792)
...|.....|..++..++..+..+..+|+..+.+++.+++.... ......|+.+...+...+.++..+.....+..+..
T Consensus 272 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (546)
T COG0699 272 PSLLSGLTLLDTLVETPIGQFDTQINQLLRKLISELVRILLKELESASSSPFPKLSEALEEVVNQLKNKVDSGLESGLLA 351 (546)
T ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 77888999999999999999999988999999999998854433 34578899999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCCccchHHHHHHHHhhhhcC--C-CCCccccCCCCCCCCCCCcchhhhhHHHHHhhhcccccCCCC
Q 003841 461 IIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSK--V-PLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGV 537 (792)
Q Consensus 461 Li~~E~~yInT~hpdF~~~~~a~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 537 (792)
.++.+..||+|.||+|.....+............ . -.+....++- ......+ ...........+ ..+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~----~~~ 421 (546)
T COG0699 352 IIDIEERYINTKHPLFLSLRQAAAILSKVLDNLEALLRSLDDSRLREL--SDMGLNS----LLSNNLEEHLLG----SDF 421 (546)
T ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccch--hhcccch----hHHHHHHHHhhc----chh
Confidence 9999999999999999987666655433211100 0 0000000000 0000000 000000000000 000
Q ss_pred CcchhhcccCCCCCCCCCCCccccccCCCCCCCCCCCCccCCCCCCCCchhhhhHHhhhhcCCCCccCCCCCCCchhHHH
Q 003841 538 RPTVEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSEQENV 617 (792)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~~~~~~s~~e~~ 617 (792)
. ...+++ .+... .. ... .-... ..... . .......+...
T Consensus 422 ------------~--~~~~~~---~~~~~----~~-~~~-----~~~~~--~~~~~---~---------~~~~~~~~~~~ 460 (546)
T COG0699 422 ------------S--LYKFLN---EFLEL----KK-LDA-----LLATL--GEALR---R---------LTGLLPERKTL 460 (546)
T ss_pred ------------h--HHHHHH---HHhhh----cc-chh-----hhccc--hHHHH---H---------hhcccchhhhh
Confidence 0 000000 00000 00 000 00000 00000 0 00111122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 003841 618 EIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQ 697 (792)
Q Consensus 618 ei~~ir~Lv~SYF~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~LY~~~~~~eLL~E~~~Ia~kR~~l~~~l~~Lkq 697 (792)
+...++.++.+| .++...+.|.|+++++.++.+..++..+......+|.+...+++..+.+.+.++|..+.+.++.+.+
T Consensus 461 ~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 539 (546)
T COG0699 461 EKQLIKSLLESL-LILAQKIRDSVLKAIFELLKNKRKRLAQKQRLKRLYLEQLEDELLRTAEEILELRLLLEQFLEALKL 539 (546)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 334558999999 9999999999999999999999988888888899999999999999999999999999999999998
Q ss_pred HHH
Q 003841 698 AFR 700 (792)
Q Consensus 698 A~~ 700 (792)
+..
T Consensus 540 ~~~ 542 (546)
T COG0699 540 AAR 542 (546)
T ss_pred HHH
Confidence 865
No 9
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.52 E-value=7.9e-14 Score=140.22 Aligned_cols=128 Identities=23% Similarity=0.329 Sum_probs=93.6
Q ss_pred CCCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHH
Q 003841 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (792)
Q Consensus 44 ~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~ 123 (792)
.-++|+||++|++|+||||+||+|+|+..|.|.+.++.| +|+.|....+....++++||++|. ++.++.++.|
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGr----Tq~iNff~~~~~~~lVDlPGYGyA---kv~k~~~e~w 93 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGR----TQLINFFEVDDELRLVDLPGYGYA---KVPKEVKEKW 93 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCc----cceeEEEEecCcEEEEeCCCcccc---cCCHHHHHHH
Confidence 348999999999999999999999999888999987444 788887754444679999999875 4444444444
Q ss_pred H----HhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCcc
Q 003841 124 D----KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 197 (792)
Q Consensus 124 ~----~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~gt 197 (792)
. .+...... |.. -..|||..+.+-..|...-+++. ..|..++.|+||+|++..+.
T Consensus 94 ~~~i~~YL~~R~~-----L~~--------vvlliD~r~~~~~~D~em~~~l~------~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 94 KKLIEEYLEKRAN-----LKG--------VVLLIDARHPPKDLDREMIEFLL------ELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred HHHHHHHHhhchh-----heE--------EEEEEECCCCCcHHHHHHHHHHH------HcCCCeEEEEEccccCChhH
Confidence 3 33332221 222 46789988888887864444333 56889999999999998654
No 10
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.00 E-value=8.9e-10 Score=122.77 Aligned_cols=173 Identities=21% Similarity=0.344 Sum_probs=109.2
Q ss_pred CcchHHHHHHHHHHHHHhCCC--CC---CCCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCc
Q 003841 22 GGSVIPLVNKLQDIFAQLGSQ--ST---IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTD 95 (792)
Q Consensus 22 ~~~l~~~~nkL~d~~~~~G~~--~~---i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~ 95 (792)
+..+-.|++.+...+- +-. .. .+.-+|+|||++|+|||||+|+|+|....-++. .+.||.++.+.+.....
T Consensus 150 g~Gi~dLld~v~~~l~--~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~- 226 (444)
T COG1160 150 GRGIGDLLDAVLELLP--PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR- 226 (444)
T ss_pred ccCHHHHHHHHHhhcC--CcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe-
Confidence 3455556666655431 211 11 245799999999999999999999999887766 57899999888775431
Q ss_pred ccceeeccCCCccccChhHHHHHHHH--HHHHh--hcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHH
Q 003841 96 EEYGEFLHLPGKRFYDFSEIRREIQA--QTDKE--AGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQ 171 (792)
Q Consensus 96 ~~~~~~~~~~g~~~~d~~~i~~~i~~--~~~~~--~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~ 171 (792)
.| .+.|.+.+|+..+. ..+++ ..+-+++ ...++ -|.++| |...+..|| ++
T Consensus 227 -~~---------~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI---------~~a~v-vllviD-----a~~~~~~qD-~~ 280 (444)
T COG1160 227 -KY---------VLIDTAGIRRKGKITESVEKYSVARTLKAI---------ERADV-VLLVID-----ATEGISEQD-LR 280 (444)
T ss_pred -EE---------EEEECCCCCcccccccceEEEeehhhHhHH---------hhcCE-EEEEEE-----CCCCchHHH-HH
Confidence 22 23344444433211 01110 0111112 12222 466788 999999999 78
Q ss_pred HHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCC-ccc-ccCeeEEecCChh
Q 003841 172 IAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKV-IPL-RLGYVGVVNRSQE 223 (792)
Q Consensus 172 la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~-~~L-~lGy~~V~nrsq~ 223 (792)
+|.-+-..|.-.|.|++|||+++..+...+...-+. ..| .++|..+.+-|..
T Consensus 281 ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~ 334 (444)
T COG1160 281 IAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISAL 334 (444)
T ss_pred HHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEec
Confidence 888888899999999999999987433232222211 123 4677777776654
No 11
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.76 E-value=9e-07 Score=99.37 Aligned_cols=147 Identities=22% Similarity=0.255 Sum_probs=83.8
Q ss_pred cchHHHHHHHHHHHHHhCCCCCC-CCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCccccee
Q 003841 23 GSVIPLVNKLQDIFAQLGSQSTI-ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGE 100 (792)
Q Consensus 23 ~~l~~~~nkL~d~~~~~G~~~~i-~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~ 100 (792)
..+-.+.++|.++++....+.-+ +--.||+||.+|+|||||||+|+|.+.-.+++ .++||.-++-.+.-.. -...
T Consensus 192 ~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G---~pv~ 268 (454)
T COG0486 192 EKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG---IPVR 268 (454)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC---EEEE
Confidence 34445555666655544333222 45689999999999999999999998765555 5689988776654321 1112
Q ss_pred eccCCCccccChhHHHHH-HHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCC
Q 003841 101 FLHLPGKRFYDFSEIRRE-IQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPD 179 (792)
Q Consensus 101 ~~~~~g~~~~d~~~i~~~-i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~ 179 (792)
.++.-|-+.++ +.|.+. |+.....+.. .++ -|.++| ++..+...+-.-+. .-+.
T Consensus 269 l~DTAGiRet~-d~VE~iGIeRs~~~i~~----------------ADl-vL~v~D-----~~~~~~~~d~~~~~--~~~~ 323 (454)
T COG0486 269 LVDTAGIRETD-DVVERIGIERAKKAIEE----------------ADL-VLFVLD-----ASQPLDKEDLALIE--LLPK 323 (454)
T ss_pred EEecCCcccCc-cHHHHHHHHHHHHHHHh----------------CCE-EEEEEe-----CCCCCchhhHHHHH--hccc
Confidence 23333433211 112111 2222221111 111 466677 55544444422222 3367
Q ss_pred CCeEEEEeecCCCCCCcc
Q 003841 180 GYRTIGIITKLDIMDRGT 197 (792)
Q Consensus 180 g~RTIGVlTK~D~~~~gt 197 (792)
+.++|.|+||.|++....
T Consensus 324 ~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 324 KKPIIVVLNKADLVSKIE 341 (454)
T ss_pred CCCEEEEEechhcccccc
Confidence 899999999999997643
No 12
>PRK09866 hypothetical protein; Provisional
Probab=98.76 E-value=3.1e-06 Score=98.54 Aligned_cols=60 Identities=25% Similarity=0.379 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEe
Q 003841 27 PLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLL 90 (792)
Q Consensus 27 ~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~ 90 (792)
.-+..|+.-+..+-. .-|.++|||..|+|||||+|+|+|...+|.+...+|.+|+.++..
T Consensus 53 ~ri~~L~~~L~Kv~~----~~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~ 112 (741)
T PRK09866 53 ERHAMLNNELRKISR----LEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHT 112 (741)
T ss_pred HHHHHHHHHHHHHhc----cceEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEec
Confidence 444444444444422 229999999999999999999999999999999999999966543
No 13
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.57 E-value=4.9e-07 Score=96.98 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=68.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHhh
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~ 127 (792)
.|+|||.+|+|||||+|+|+|..+-.++. ..+||.++.-..... +....|++.||.... ...+.+.+...+....
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~---~~qii~vDTPG~~~~-~~~l~~~~~~~~~~~l 77 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG---ASQIIFIDTPGFHEK-KHSLNRLMMKEARSAI 77 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC---CcEEEEEECcCCCCC-cchHHHHHHHHHHHHH
Confidence 58999999999999999999997544443 357887764433221 123467899986432 1222222222221111
Q ss_pred cCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhh-HHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLAN-SDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~-~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
. +.++ -+.++| ++..... ..++...+ ..+.++|.|+||.|+.++
T Consensus 78 ~---------------~aDv-vl~VvD-----~~~~~~~~~~i~~~l~---~~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 78 G---------------GVDL-ILFVVD-----SDQWNGDGEFVLTKLQ---NLKRPVVLTRNKLDNKFK 122 (270)
T ss_pred h---------------hCCE-EEEEEE-----CCCCCchHHHHHHHHH---hcCCCEEEEEECeeCCCH
Confidence 1 1222 345677 3222111 22333333 346889999999999853
No 14
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.57 E-value=3.6e-07 Score=102.28 Aligned_cols=123 Identities=24% Similarity=0.230 Sum_probs=82.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHh
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~ 126 (792)
|.||+||++|+|||||+|+|+|...--+.+ .++||.++.-...-... + ..+++..|-...+-+++.+.+.+.+...
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~-f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--E-FILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--e-EEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 899999999999999999999997533433 57999887655443321 1 2345666655444456777776666554
Q ss_pred hcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
+... ++ -|.+|| +...++..| ..+|+.+-+.+.++|.|++|+|..+.
T Consensus 81 i~eA---------------Dv-ilfvVD-----~~~Git~~D-~~ia~~Lr~~~kpviLvvNK~D~~~~ 127 (444)
T COG1160 81 IEEA---------------DV-ILFVVD-----GREGITPAD-EEIAKILRRSKKPVILVVNKIDNLKA 127 (444)
T ss_pred HHhC---------------CE-EEEEEe-----CCCCCCHHH-HHHHHHHHhcCCCEEEEEEcccCchh
Confidence 3321 12 466788 444444444 44555555777999999999999843
No 15
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.57 E-value=1.4e-07 Score=93.00 Aligned_cols=117 Identities=26% Similarity=0.310 Sum_probs=72.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCc-cccChhHHHHHHHHHHHHh
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGK-RFYDFSEIRREIQAQTDKE 126 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~-~~~d~~~i~~~i~~~~~~~ 126 (792)
+|++||.+|+|||||+|+|+|... .++. .++|+.+.+-.+... ....+++++||. .....++ .+.+. .+.+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~~~~~---~~~~~lvDlPG~ysl~~~s~-ee~v~--~~~l 74 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGIFKLG---DQQVELVDLPGIYSLSSKSE-EERVA--RDYL 74 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEEEEET---TEEEEEEE----SSSSSSSH-HHHHH--HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEEEEec---CceEEEEECCCcccCCCCCc-HHHHH--HHHH
Confidence 699999999999999999999984 4444 567777766666543 255688999993 3322211 11121 1222
Q ss_pred hcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
... .|++ -+.++| |+. ++ .-+.+..++-..|.++|.|+||+|+..+
T Consensus 75 ~~~--------------~~D~-ii~VvD-----a~~-l~--r~l~l~~ql~e~g~P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 75 LSE--------------KPDL-IIVVVD-----ATN-LE--RNLYLTLQLLELGIPVVVVLNKMDEAER 120 (156)
T ss_dssp HHT--------------SSSE-EEEEEE-----GGG-HH--HHHHHHHHHHHTTSSEEEEEETHHHHHH
T ss_pred hhc--------------CCCE-EEEECC-----CCC-HH--HHHHHHHHHHHcCCCEEEEEeCHHHHHH
Confidence 211 1222 456678 544 32 2356777777789999999999999853
No 16
>COG1159 Era GTPase [General function prediction only]
Probab=98.46 E-value=3.1e-06 Score=90.26 Aligned_cols=168 Identities=20% Similarity=0.220 Sum_probs=93.8
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC-CCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHhh
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~-~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~ 127 (792)
-|++||++|+|||+|||+|+|.+...++.. -+||..+.-..... +....|++.||...- -..+-+.+......
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~---~~QiIfvDTPGih~p-k~~l~~~m~~~a~~-- 81 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD---NAQIIFVDTPGIHKP-KHALGELMNKAARS-- 81 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC---CceEEEEeCCCCCCc-chHHHHHHHHHHHH--
Confidence 489999999999999999999987666663 57888776655443 355678999996532 22222222222111
Q ss_pred cCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHH--HHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhC
Q 003841 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSD--ALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLG 205 (792)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~--al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~ 205 (792)
++++ -++ -|.+|| ++..+..-+ .+...+. ...+.|.++||.|+....+....+...
T Consensus 82 ----sl~d---------vDl-ilfvvd-----~~~~~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~ 139 (298)
T COG1159 82 ----ALKD---------VDL-ILFVVD-----ADEGWGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAF 139 (298)
T ss_pred ----Hhcc---------CcE-EEEEEe-----ccccCCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHH
Confidence 1111 111 455677 555444333 2333333 457999999999999876532222211
Q ss_pred CCcccccCeeEEecCChhhhhcccCHHHHHHHHHHhhcCCCCCC
Q 003841 206 KVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYN 249 (792)
Q Consensus 206 ~~~~L~lGy~~V~nrsq~di~~~~s~~ea~~~E~~fF~~~~~~~ 249 (792)
....+.|--+.--|+.. +..+..-...=.+++..+|+|-
T Consensus 140 --~~~~~~f~~ivpiSA~~---g~n~~~L~~~i~~~Lpeg~~~y 178 (298)
T COG1159 140 --LKKLLPFKEIVPISALK---GDNVDTLLEIIKEYLPEGPWYY 178 (298)
T ss_pred --HHhhCCcceEEEeeccc---cCCHHHHHHHHHHhCCCCCCcC
Confidence 11122232333334432 2234443344455566666653
No 17
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.44 E-value=3.2e-06 Score=94.17 Aligned_cols=126 Identities=19% Similarity=0.215 Sum_probs=74.9
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHH
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~ 124 (792)
-..|+|++||..|+|||||||+|+|..+...+.-..|+.|+.-.+.... .....+.+.+|.......++.+.++...+
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~--~~~i~l~DT~G~~~~l~~~lie~f~~tle 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD--GGEVLLTDTVGFIRDLPHELVAAFRATLE 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC--CceEEEEecCcccccCCHHHHHHHHHHHH
Confidence 3679999999999999999999999986444445688988765554311 12335677787521112233233322222
Q ss_pred HhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhh---HHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLAN---SDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~---~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
.+. ..++ -|.+|| ++..... ..+..+.+++.-.+.++|.|+||+|+.+
T Consensus 265 ~~~----------------~ADl-il~VvD-----~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 265 EVR----------------EADL-LLHVVD-----ASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred HHH----------------hCCE-EEEEEE-----CCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 111 1111 355677 3221111 1234555565545678999999999975
No 18
>PRK00089 era GTPase Era; Reviewed
Probab=98.41 E-value=8.7e-06 Score=88.18 Aligned_cols=120 Identities=23% Similarity=0.267 Sum_probs=66.2
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC-CCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHhh
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~-~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~ 127 (792)
-|+|||..|||||||+|+|+|.++...+.. .+||..+.-.... .+....|++.||..... ..+.+.+...+....
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~---~~~qi~~iDTPG~~~~~-~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE---DDAQIIFVDTPGIHKPK-RALNRAMNKAAWSSL 82 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc---CCceEEEEECCCCCCch-hHHHHHHHHHHHHHH
Confidence 489999999999999999999976444443 3566554322221 12345678899854211 222222222221111
Q ss_pred cCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
.. .++ -+.++| +...+...+ ..+.+.+-..+.+.|.|+||.|+..
T Consensus 83 ~~---------------~D~-il~vvd-----~~~~~~~~~-~~i~~~l~~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 83 KD---------------VDL-VLFVVD-----ADEKIGPGD-EFILEKLKKVKTPVILVLNKIDLVK 127 (292)
T ss_pred hc---------------CCE-EEEEEe-----CCCCCChhH-HHHHHHHhhcCCCEEEEEECCcCCC
Confidence 11 111 355667 333222221 2222222234678999999999984
No 19
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.40 E-value=4.2e-06 Score=85.42 Aligned_cols=127 Identities=19% Similarity=0.210 Sum_probs=72.5
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHH
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~ 124 (792)
-..|.|+|+|..|+||||||++|+|..+.+.+....|..|....+.... .....+++.||..........+.....+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD--GREVLLTDTVGFIRDLPHQLVEAFRSTLE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC--CceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence 4579999999999999999999999876555555566656543332211 11345678888532212222222211111
Q ss_pred HhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchh---hHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLA---NSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~---~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
.... .++ -+.++| +..... ...+.++.+.+...+.+.|.|+||+|+.+.
T Consensus 117 ~~~~----------------~d~-ii~v~D-----~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 117 EVAE----------------ADL-LLHVVD-----ASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred HHhc----------------CCe-EEEEEE-----CCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 1111 111 344566 222111 123445556665567899999999999764
No 20
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.39 E-value=6.4e-05 Score=86.31 Aligned_cols=82 Identities=24% Similarity=0.244 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCccc-cCCCCCcccEEEEEeeccCcccceeec
Q 003841 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPR-GNDICTRRPLVLQLLQTKTDEEYGEFL 102 (792)
Q Consensus 24 ~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr-~~~~~TR~P~~l~l~~~~~~~~~~~~~ 102 (792)
.+-.+.++|.++++.......-+-.+||+||.+|+|||||+|+|+|..+-.+ ....+||...+..+.... ....+.
T Consensus 180 ~l~~~~~~l~~ll~~~~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g---~~v~l~ 256 (442)
T TIGR00450 180 LLLSIIAELKDILNSYKLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG---ILIKLL 256 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC---EEEEEe
Confidence 3445556666665554222223567999999999999999999999864223 234567766655444321 122567
Q ss_pred cCCCcc
Q 003841 103 HLPGKR 108 (792)
Q Consensus 103 ~~~g~~ 108 (792)
+.||..
T Consensus 257 DTaG~~ 262 (442)
T TIGR00450 257 DTAGIR 262 (442)
T ss_pred eCCCcc
Confidence 788854
No 21
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.38 E-value=6.1e-06 Score=76.57 Aligned_cols=114 Identities=23% Similarity=0.281 Sum_probs=66.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCccccChhHH-HHHHHHHHHHh
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEI-RREIQAQTDKE 126 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i-~~~i~~~~~~~ 126 (792)
+|+|+|..|+|||||+|+|+|......+. ..+|+.+..-.... ...+..+++.||......... .+.+.......
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~---~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY---NNKKFILVDTPGINDGESQDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE---TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee---ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence 69999999999999999999975444444 57899884422222 123446899999543322221 11222222221
Q ss_pred hcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeec
Q 003841 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITK 189 (792)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK 189 (792)
.. . + + -+.+|| ++..+. .....+.+++. .+.++|.|+||
T Consensus 78 -~~---~--d----------~-ii~vv~-----~~~~~~-~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 78 -SK---S--D----------L-IIYVVD-----ASNPIT-EDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp -CT---E--S----------E-EEEEEE-----TTSHSH-HHHHHHHHHHH-TTSEEEEEEES
T ss_pred -HH---C--C----------E-EEEEEE-----CCCCCC-HHHHHHHHHHh-cCCCEEEEEcC
Confidence 11 1 1 1 344567 444322 22345555555 78999999998
No 22
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.38 E-value=7.3e-06 Score=93.49 Aligned_cols=145 Identities=18% Similarity=0.286 Sum_probs=84.0
Q ss_pred cchHHHHHHHHHHHHHhCCC--CCCCCCeEEEEccCCCchhHHHHHHhCCCCccc-cCCCCCcccEEEEEeeccCcccce
Q 003841 23 GSVIPLVNKLQDIFAQLGSQ--STIELPQVAVVGSQSSGKSSVLEALVGRDFLPR-GNDICTRRPLVLQLLQTKTDEEYG 99 (792)
Q Consensus 23 ~~l~~~~nkL~d~~~~~G~~--~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr-~~~~~TR~P~~l~l~~~~~~~~~~ 99 (792)
..+-.+++.+...+..-+.. ..-...+|+|+|..++|||||+++|+|.++... ....+||.++...+.... .-.
T Consensus 146 ~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~---~~~ 222 (429)
T TIGR03594 146 RGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG---KKY 222 (429)
T ss_pred CChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC---cEE
Confidence 34555666665543221111 112346899999999999999999999875433 335678888776665432 123
Q ss_pred eeccCCCccccChhHHHHHHHH----HHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhh
Q 003841 100 EFLHLPGKRFYDFSEIRREIQA----QTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGI 175 (792)
Q Consensus 100 ~~~~~~g~~~~d~~~i~~~i~~----~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~ 175 (792)
.+++.||... +..+...++. .+..... ..++ -+.++| +...++.++ .++++.
T Consensus 223 ~liDT~G~~~--~~~~~~~~e~~~~~~~~~~~~---------------~ad~-~ilV~D-----~~~~~~~~~-~~~~~~ 278 (429)
T TIGR03594 223 LLIDTAGIRR--KGKVTEGVEKYSVLRTLKAIE---------------RADV-VLLVLD-----ATEGITEQD-LRIAGL 278 (429)
T ss_pred EEEECCCccc--cccchhhHHHHHHHHHHHHHH---------------hCCE-EEEEEE-----CCCCccHHH-HHHHHH
Confidence 4667787431 1111111111 1111111 1122 355677 555555554 456666
Q ss_pred hCCCCCeEEEEeecCCCCC
Q 003841 176 ADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 176 vDp~g~RTIGVlTK~D~~~ 194 (792)
+...|.+.|.|+||+|+++
T Consensus 279 ~~~~~~~iiiv~NK~Dl~~ 297 (429)
T TIGR03594 279 ILEAGKALVIVVNKWDLVK 297 (429)
T ss_pred HHHcCCcEEEEEECcccCC
Confidence 6667899999999999983
No 23
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.35 E-value=3.7e-06 Score=84.21 Aligned_cols=127 Identities=22% Similarity=0.292 Sum_probs=72.1
Q ss_pred CCCCCeEEEEccCCCchhHHHHHHhCCCCccccCC--CCCcccEEEEEeeccCcccceeeccCCCccccChh-HHHHHHH
Q 003841 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFS-EIRREIQ 120 (792)
Q Consensus 44 ~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~--~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~-~i~~~i~ 120 (792)
.-..|.|+|+|..++||||++++|+|..+.+..+. .+|+.+..... . .-..+++.||....... ..+....
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~---~~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N---DGFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C---CcEEEEeCCCCccccCChhHHHHHH
Confidence 35789999999999999999999999875554332 35654322221 1 12356788885432211 1112222
Q ss_pred HHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 121 AQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 121 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
.....+....... ++ -+.++| ++.++...+ .++.+.++..+.+.|+|+||+|+++.
T Consensus 89 ~~~~~~l~~~~~~------------~~-ii~vvd-----~~~~~~~~~-~~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 89 KLIEEYLEKRENL------------KG-VVLLMD-----IRHPLKELD-LEMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHHHHHHhChhh------------cE-EEEEec-----CCCCCCHHH-HHHHHHHHHcCCCEEEEEECcccCCH
Confidence 1111111110000 11 355567 455554444 23444555678899999999999864
No 24
>PRK11058 GTPase HflX; Provisional
Probab=98.34 E-value=4.8e-06 Score=95.03 Aligned_cols=126 Identities=16% Similarity=0.197 Sum_probs=73.3
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHH
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~ 124 (792)
..+|.|++||.+|+|||||+|+|+|.++...+.-.+|+.|+.-.+.-.. .....+++.+|........+...+.....
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~--~~~~~l~DTaG~~r~lp~~lve~f~~tl~ 272 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD--VGETVLADTVGFIRHLPHDLVAAFKATLQ 272 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC--CCeEEEEecCcccccCCHHHHHHHHHHHH
Confidence 3679999999999999999999999886433334678888764443221 11234678888521111222222222111
Q ss_pred HhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc-h-hh-HHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD-L-AN-SDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D-l-~~-~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
.. ...++ -|.++| ++.. . .+ ..+.++.+++...+.++|.|+||+|+.+
T Consensus 273 ~~----------------~~ADl-IL~VvD-----aS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 273 ET----------------RQATL-LLHVVD-----AADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred Hh----------------hcCCE-EEEEEe-----CCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 11 11122 356677 3221 1 11 1123455566556789999999999975
No 25
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.32 E-value=1.3e-05 Score=92.95 Aligned_cols=124 Identities=21% Similarity=0.253 Sum_probs=73.2
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccc-cCCCCCcccEEEEEeeccCcccceeeccCCCcccc-ChhHHHHHHHH-H
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPR-GNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFY-DFSEIRREIQA-Q 122 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr-~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~-d~~~i~~~i~~-~ 122 (792)
..++|+|||.+|+|||||+++|+|..+... ...+.||.++...+.... ..+ .+++.+|.... ....-...... .
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~-~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTW-RFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEE-EEEECCCccccccccchHHHHHHHH
Confidence 568999999999999999999999875433 335678888766554432 222 46777874210 00000000000 0
Q ss_pred HHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 123 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
+.... ...++ -+.++| +...++.++ ++++..+...|..+|.|+||+|+.+
T Consensus 287 ~~~~i---------------~~ad~-vilV~D-----a~~~~s~~~-~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 287 THAAI---------------EAAEV-AVVLID-----ASEPISEQD-QRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHH---------------hcCCE-EEEEEe-----CCCCCCHHH-HHHHHHHHHcCCCEEEEEECcccCC
Confidence 10111 11222 455677 444444443 3455555557899999999999985
No 26
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.30 E-value=1.3e-05 Score=91.82 Aligned_cols=122 Identities=24% Similarity=0.367 Sum_probs=76.4
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHH----
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQ---- 120 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~---- 120 (792)
+..+|+|||..++|||||+++|+|......+. .+.||.++...+... .....+++.||.... ..+...++
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~---~~~~~lvDT~G~~~~--~~~~~~~e~~~~ 246 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD---GQKYTLIDTAGIRRK--GKVTEGVEKYSV 246 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC---CeeEEEEECCCCCCC--cchhhHHHHHHH
Confidence 46899999999999999999999987554443 467887776665432 123357788884311 11111111
Q ss_pred HHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 121 AQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 121 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
..+.+... ..++ -+.+|| +...+..++ .++++.+...|...|.|+||+|+.+
T Consensus 247 ~~~~~~~~---------------~ad~-~ilViD-----~~~~~~~~~-~~i~~~~~~~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 247 IRTLKAIE---------------RADV-VLLVID-----ATEGITEQD-LRIAGLALEAGRALVIVVNKWDLVD 298 (435)
T ss_pred HHHHHHHH---------------HCCE-EEEEEe-----CCCCCCHHH-HHHHHHHHHcCCcEEEEEECccCCC
Confidence 11111111 1111 355677 666665555 4566666667899999999999984
No 27
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.29 E-value=9.7e-06 Score=81.71 Aligned_cols=74 Identities=22% Similarity=0.296 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCC--CCCCCCeEEEEccCCCchhHHHHHHhCCCCccccCC--CCCcccEEEEEeeccCcccceeeccC
Q 003841 29 VNKLQDIFAQLGSQ--STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHL 104 (792)
Q Consensus 29 ~nkL~d~~~~~G~~--~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~--~~TR~P~~l~l~~~~~~~~~~~~~~~ 104 (792)
+.++++.-+..-++ ..-.+|.|+|||.+++||||||++|+|..+.+..++ .|||.+..... +....+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~------~~~l~l~Dt 77 (196)
T PRK00454 4 IHNAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV------NDKLRLVDL 77 (196)
T ss_pred hhHHHHHHhhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec------CCeEEEeCC
Confidence 34445443333222 334789999999999999999999999876555443 35654322221 122356788
Q ss_pred CCcc
Q 003841 105 PGKR 108 (792)
Q Consensus 105 ~g~~ 108 (792)
||..
T Consensus 78 pG~~ 81 (196)
T PRK00454 78 PGYG 81 (196)
T ss_pred CCCC
Confidence 8854
No 28
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.28 E-value=1.5e-05 Score=96.76 Aligned_cols=124 Identities=23% Similarity=0.302 Sum_probs=74.6
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCc-cccCCCCCcccEEEEEeeccCcccceeeccCCCccc--cChhHHHHHHHH-
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL-PRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF--YDFSEIRREIQA- 121 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~l-Pr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~--~d~~~i~~~i~~- 121 (792)
..++|++||..|+|||||+|+|+|..+. +.....+||.++...+.... .. ..+++.+|... ...... +....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--~~-~~liDTaG~~~~~~~~~~~-e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--ED-WLFIDTAGIKRRQHKLTGA-EYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--CE-EEEEECCCcccCcccchhH-HHHHHH
Confidence 5689999999999999999999999753 33345678888766554432 22 24678887421 100000 00000
Q ss_pred HHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 122 QTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 122 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
.+... + ...++ -+.++| ++..++.++ ++++..+...|...|.|+||+|+++.
T Consensus 525 r~~~~------i---------~~adv-vilViD-----at~~~s~~~-~~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 525 RTQAA------I---------ERSEL-ALFLFD-----ASQPISEQD-LKVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred HHHHH------h---------hcCCE-EEEEEE-----CCCCCCHHH-HHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 00010 1 11122 344577 555555444 45555665678999999999999863
No 29
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.25 E-value=9.9e-05 Score=85.02 Aligned_cols=81 Identities=22% Similarity=0.207 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHhCCCC-CCCCCeEEEEccCCCchhHHHHHHhCCCCcccc-CCCCCcccEEEEEeeccCcccceeec
Q 003841 25 VIPLVNKLQDIFAQLGSQS-TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFL 102 (792)
Q Consensus 25 l~~~~nkL~d~~~~~G~~~-~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~-~~~~TR~P~~l~l~~~~~~~~~~~~~ 102 (792)
+-.+.++|.++.+...... .-+-+.|++||..|+|||||+|+|+|.++..++ ....||.+++..+.... ....+.
T Consensus 192 i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g---~~i~l~ 268 (449)
T PRK05291 192 LEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG---IPLRLI 268 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC---eEEEEE
Confidence 3344555555444332111 124479999999999999999999998753333 34567877665554321 123567
Q ss_pred cCCCcc
Q 003841 103 HLPGKR 108 (792)
Q Consensus 103 ~~~g~~ 108 (792)
+.+|..
T Consensus 269 DT~G~~ 274 (449)
T PRK05291 269 DTAGIR 274 (449)
T ss_pred eCCCCC
Confidence 888854
No 30
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.23 E-value=1.2e-05 Score=82.00 Aligned_cols=147 Identities=17% Similarity=0.166 Sum_probs=79.1
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccC--CCCCcccEEEEEeeccCcccceeeccCCCccccC--hhHHHHHHHHHHH
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYD--FSEIRREIQAQTD 124 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~--~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d--~~~i~~~i~~~~~ 124 (792)
+|++||..++|||||+|+|+|...+..+. ..+|+.+........ .....+++.||....+ -+++.+++.....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~---~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD---GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC---CeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 69999999999999999999997655553 356665433322221 1234678999965432 2234444332211
Q ss_pred HhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhH--HHHHHHhhh-CC-CCCeEEEEeecCCCCCCcchHH
Q 003841 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANS--DALQIAGIA-DP-DGYRTIGIITKLDIMDRGTDAR 200 (792)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~--~al~la~~v-Dp-~g~RTIGVlTK~D~~~~gt~~~ 200 (792)
.. ..++++ -|.++| +.. +... .+++..+++ .+ -..++|.|+||.|.+..+ ...
T Consensus 79 ~~---------------~~g~~~-illVi~-----~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~-~~~ 135 (196)
T cd01852 79 LS---------------APGPHA-FLLVVP-----LGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG-TLE 135 (196)
T ss_pred hc---------------CCCCEE-EEEEEE-----CCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC-cHH
Confidence 10 012222 334445 222 3222 234444442 21 135899999999998654 333
Q ss_pred HHHhCCC-------cccccCeeEEecCC
Q 003841 201 NLLLGKV-------IPLRLGYVGVVNRS 221 (792)
Q Consensus 201 ~il~~~~-------~~L~lGy~~V~nrs 221 (792)
+++.+.. ....--|+..-|+.
T Consensus 136 ~~~~~~~~~l~~l~~~c~~r~~~f~~~~ 163 (196)
T cd01852 136 DYLENSCEALKRLLEKCGGRYVAFNNKA 163 (196)
T ss_pred HHHHhccHHHHHHHHHhCCeEEEEeCCC
Confidence 3333321 11222366666665
No 31
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.21 E-value=1.5e-05 Score=92.30 Aligned_cols=124 Identities=21% Similarity=0.192 Sum_probs=71.0
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCcc-ccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHH
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLP-RGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lP-r~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~ 123 (792)
-..|.|+|||..|+|||||+++|+|..+.. ....++||..+........ .-..+++.+|.. .+...+.+.+...+
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~---~~~~l~DT~G~~-~~~~~~~~~~~~~~ 111 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG---RRFTVVDTGGWE-PDAKGLQASVAEQA 111 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC---cEEEEEeCCCcC-CcchhHHHHHHHHH
Confidence 467999999999999999999999986422 2334567765544332211 113456788854 22333444444333
Q ss_pred HHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
...... .++ -|.+|| +...+...+ ..++..+...+..+|.|+||+|+..
T Consensus 112 ~~~~~~---------------aD~-il~VvD-----~~~~~s~~~-~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 112 EVAMRT---------------ADA-VLFVVD-----ATVGATATD-EAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred HHHHHh---------------CCE-EEEEEE-----CCCCCCHHH-HHHHHHHHHcCCCEEEEEECccCCc
Confidence 322211 111 355677 332222111 2223333346789999999999864
No 32
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.18 E-value=1e-05 Score=78.17 Aligned_cols=123 Identities=19% Similarity=0.284 Sum_probs=65.8
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC--CCcccEEEEEeeccCcccceeeccCCCccccCh-hHHHHHHHHHHHH
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDF-SEIRREIQAQTDK 125 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~--~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~-~~i~~~i~~~~~~ 125 (792)
+|+++|+.++|||||+++|++..+.+..++. +|+....+.. +....+++.||...... ...++.....+..
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~------~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 74 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV------NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEE 74 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc------cCeEEEecCCCccccccCHHHHHHHHHHHHH
Confidence 5899999999999999999965566766654 4544322221 12456777888543311 1122222222222
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCc
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 196 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~g 196 (792)
+.... +.+. ..+.++|. ..+.. ..-.++.+.++..+...+.|+||+|++..+
T Consensus 75 ~~~~~-----~~~~--------~~~~v~d~-----~~~~~-~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 75 YLENR-----ENLK--------GVVLLIDS-----RHGPT-EIDLEMLDWLEELGIPFLVVLTKADKLKKS 126 (170)
T ss_pred HHHhC-----hhhh--------EEEEEEEc-----CcCCC-HhHHHHHHHHHHcCCCEEEEEEchhcCChH
Confidence 22111 0100 12345552 22211 111233344444467899999999998654
No 33
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.15 E-value=3.9e-05 Score=81.57 Aligned_cols=65 Identities=17% Similarity=0.059 Sum_probs=45.3
Q ss_pred CCCCCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCcccc
Q 003841 43 STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFY 110 (792)
Q Consensus 43 ~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~ 110 (792)
....-..|+|+|..|+|||||+|+|+|.....++. ..+|+.+........ ..-..+++.||....
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~---g~~i~vIDTPGl~~~ 92 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD---GFKLNIIDTPGLLES 92 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC---CeEEEEEECCCcCcc
Confidence 34567799999999999999999999997655543 246666554433221 112367899997644
No 34
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.14 E-value=2.2e-05 Score=76.75 Aligned_cols=119 Identities=12% Similarity=0.080 Sum_probs=64.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHhh
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~ 127 (792)
.+|+|||+.++||||+++++++..|.+....+++.......+.... ......+.+.+|... +..+ +....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~--~~~~-------~~~~~ 73 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDG-KTIKAQIWDTAGQER--YRAI-------TSAYY 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECC-EEEEEEEEeCCChHH--HHHH-------HHHHH
Confidence 5899999999999999999999987555544444322222222111 111234455665321 1111 11111
Q ss_pred cCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
... + .-+.++|+. ..+.--.-..++...++..+.+...+.|.||.|+.+
T Consensus 74 ~~~-----~-----------~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 74 RGA-----V-----------GALLVYDIT--KKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred CCC-----C-----------EEEEEEECc--CHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 110 1 124556732 111111123466666666666789999999999875
No 35
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.12 E-value=1.5e-05 Score=77.92 Aligned_cols=60 Identities=18% Similarity=0.249 Sum_probs=37.6
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~ 107 (792)
|.|+|+|..++|||||+++|++..+.......+|+......+...........+++.||.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~ 60 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGH 60 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCc
Confidence 789999999999999999999887654433445543222222211001123356778885
No 36
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.11 E-value=2.3e-05 Score=89.43 Aligned_cols=122 Identities=21% Similarity=0.174 Sum_probs=73.0
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccc-cCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHhh
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPR-GNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr-~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~ 127 (792)
.|+|||+.|+|||||+|.|+|...-.+ ....+||......+.... .-..+++.||... +...+.+.+...+....
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~---~~~~liDTpG~~~-~~~~~~~~~~~~~~~~~ 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG---REFILIDTGGIEE-DDDGLDKQIREQAEIAI 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC---eEEEEEECCCCCC-cchhHHHHHHHHHHHHH
Confidence 489999999999999999999864333 335688877665544321 2235678888532 22334445544443322
Q ss_pred cCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCc
Q 003841 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 196 (792)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~g 196 (792)
.. .++ -|.+|| +...+...+ ..+++.+...+..+|.|+||+|+.+..
T Consensus 77 ~~---------------ad~-vl~vvD-----~~~~~~~~d-~~i~~~l~~~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 77 EE---------------ADV-ILFVVD-----GREGLTPED-EEIAKWLRKSGKPVILVANKIDGKKED 123 (429)
T ss_pred hh---------------CCE-EEEEEe-----CCCCCCHHH-HHHHHHHHHhCCCEEEEEECccCCccc
Confidence 21 111 355677 443333322 223333333578899999999997643
No 37
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.09 E-value=5.2e-05 Score=77.46 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=22.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.+|+|+|+.|+|||||+|+|+|..+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~ 26 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH 26 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC
Confidence 4799999999999999999999764
No 38
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.06 E-value=6.4e-05 Score=72.26 Aligned_cols=59 Identities=29% Similarity=0.327 Sum_probs=38.3
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCC-CCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~-~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
-..|+|+|..|+||||++++|+|.++.+.+.. .+|+......+... .....+++.||..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~liDtpG~~ 62 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDD---DAQIIFVDTPGIH 62 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcC---CeEEEEEECCCCC
Confidence 35799999999999999999999975433332 34554433332211 1234567888854
No 39
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=0.00012 Score=82.53 Aligned_cols=45 Identities=33% Similarity=0.288 Sum_probs=39.2
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEe
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLL 90 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~ 90 (792)
.-++||++|++|+|||||||+|+..+.--++. .+.||..++..+.
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~ 312 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVT 312 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEee
Confidence 44899999999999999999999998766665 5789999988875
No 40
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.06 E-value=4.5e-05 Score=87.33 Aligned_cols=120 Identities=21% Similarity=0.204 Sum_probs=69.0
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccc-cCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPR-GNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr-~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
+|.|++||+.|+|||||+++|+|.....+ ....+||....-.+.... ....+++.||....+ ..+...+...+..
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~---~~~~liDT~G~~~~~-~~~~~~~~~~~~~ 76 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG---REFILIDTGGIEPDD-DGFEKQIREQAEL 76 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC---cEEEEEECCCCCCcc-hhHHHHHHHHHHH
Confidence 48999999999999999999999864223 334577776654443321 223567888864311 1233333333322
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhH--HHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANS--DALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~--~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
.... .++ -|.+|| +...+... +..+..++ .+.++|.|+||+|+.+
T Consensus 77 ~~~~---------------ad~-il~vvd-----~~~~~~~~~~~~~~~l~~---~~~piilv~NK~D~~~ 123 (435)
T PRK00093 77 AIEE---------------ADV-ILFVVD-----GRAGLTPADEEIAKILRK---SNKPVILVVNKVDGPD 123 (435)
T ss_pred HHHh---------------CCE-EEEEEE-----CCCCCCHHHHHHHHHHHH---cCCcEEEEEECccCcc
Confidence 2211 122 344567 33222221 22333333 3789999999999754
No 41
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.06 E-value=5.3e-05 Score=81.84 Aligned_cols=144 Identities=22% Similarity=0.227 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCccccC--CCCCcccEEEEEeeccCcccceeeccCC
Q 003841 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLP 105 (792)
Q Consensus 28 ~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~--~~~TR~P~~l~l~~~~~~~~~~~~~~~~ 105 (792)
.+++.++.++.|-. -+.++|.|||+|-+|+|||||+.+|++-+ |--. .-+|+- +.+=+.........+++.|
T Consensus 150 fL~~~r~~l~~LP~-Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK~---i~vGhfe~~~~R~QvIDTP 223 (346)
T COG1084 150 FLRKARDHLKKLPA-IDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTKG---IHVGHFERGYLRIQVIDTP 223 (346)
T ss_pred HHHHHHHHHhcCCC-CCCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCCCccccc---eeEeeeecCCceEEEecCC
Confidence 44445555444421 24579999999999999999999999985 3322 234442 2332322211122467888
Q ss_pred CccccChhHHHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCC-CeEE
Q 003841 106 GKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDG-YRTI 184 (792)
Q Consensus 106 g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g-~RTI 184 (792)
|----++++ ++.|+...-....--.++ -|-|+|. -..|.-.++.|.. |-.++-+.- .+++
T Consensus 224 GlLDRPl~E-rN~IE~qAi~AL~hl~~~---------------IlF~~D~-Se~cgy~lE~Q~~--L~~eIk~~f~~p~v 284 (346)
T COG1084 224 GLLDRPLEE-RNEIERQAILALRHLAGV---------------ILFLFDP-SETCGYSLEEQIS--LLEEIKELFKAPIV 284 (346)
T ss_pred cccCCChHH-hcHHHHHHHHHHHHhcCe---------------EEEEEcC-ccccCCCHHHHHH--HHHHHHHhcCCCeE
Confidence 854333433 333432211111000011 4667772 1223334555543 333333332 5899
Q ss_pred EEeecCCCCCCc
Q 003841 185 GIITKLDIMDRG 196 (792)
Q Consensus 185 GVlTK~D~~~~g 196 (792)
.|+||.|.++.+
T Consensus 285 ~V~nK~D~~~~e 296 (346)
T COG1084 285 VVINKIDIADEE 296 (346)
T ss_pred EEEecccccchh
Confidence 999999999754
No 42
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.02 E-value=5.4e-05 Score=74.54 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=25.0
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
..+|+|||+.++|||||++++++..|-+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~ 30 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNP 30 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCc
Confidence 4689999999999999999999998743
No 43
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.02 E-value=3.2e-05 Score=93.94 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=72.8
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCcccc-CCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~-~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~ 124 (792)
.+|.|++||++|+|||||+++|+|..+..++ ..++||..+....... .....+++.+|... +...+.+.+...+.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~---~~~~~liDT~G~~~-~~~~~~~~~~~~~~ 349 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA---GTDFKLVDTGGWEA-DVEGIDSAIASQAQ 349 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC---CEEEEEEeCCCcCC-CCccHHHHHHHHHH
Confidence 4689999999999999999999998653333 2457777665443321 12234678888542 22234444433332
Q ss_pred HhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
..... .++ -|.+|| +...+...+ ..+++.+...+..+|.|+||.|+..
T Consensus 350 ~~~~~---------------aD~-iL~VvD-----a~~~~~~~d-~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 350 IAVSL---------------ADA-VVFVVD-----GQVGLTSTD-ERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred HHHHh---------------CCE-EEEEEE-----CCCCCCHHH-HHHHHHHHhcCCCEEEEEECccccc
Confidence 22211 112 455678 444333332 2334444457899999999999865
No 44
>PRK15494 era GTPase Era; Provisional
Probab=98.01 E-value=4.8e-05 Score=84.45 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=39.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~ 107 (792)
..|++||+.|+|||||+++|+|..+..++. ..+||....-.+... +....|++.||.
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~---~~qi~~~DTpG~ 110 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLK---DTQVILYDTPGI 110 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeC---CeEEEEEECCCc
Confidence 489999999999999999999997643333 245665543222221 123467889986
No 45
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.00 E-value=4.4e-05 Score=74.77 Aligned_cols=57 Identities=21% Similarity=0.188 Sum_probs=37.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~ 107 (792)
.|++||..++|||||+++|+|....+......|+.|..-.+.... .....+.+.||.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~ 58 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD--GRSFVVADIPGL 58 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC--CCeEEEEecCcc
Confidence 489999999999999999999864222223456666543332211 123457788884
No 46
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.99 E-value=0.00012 Score=79.56 Aligned_cols=75 Identities=19% Similarity=0.313 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 30 NKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 30 nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
.+|.+++..+-. .+.+..+|+|+|..|+||||++|+|+|......+. ..+|..|+...... ......+++.||..
T Consensus 22 ~~l~~~l~~l~~-~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~---~G~~l~VIDTPGL~ 97 (313)
T TIGR00991 22 TKLLELLGKLKE-EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR---AGFTLNIIDTPGLI 97 (313)
T ss_pred HHHHHHHHhccc-ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE---CCeEEEEEECCCCC
Confidence 444444444432 35788999999999999999999999986422222 23455555433221 12234677889854
No 47
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.98 E-value=5.1e-05 Score=74.29 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=35.6
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~ 107 (792)
|.|+++|.+++|||||+++|++..+ +.+. ...|+.+..-.... ......+.+.||.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~~i~Dt~G~ 57 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDY---KYLRWQVIDTPGL 57 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEcc---CceEEEEEECCCc
Confidence 7899999999999999999999875 3322 22344332211111 1123456777875
No 48
>PRK04213 GTP-binding protein; Provisional
Probab=97.98 E-value=6.6e-05 Score=76.32 Aligned_cols=57 Identities=25% Similarity=0.294 Sum_probs=40.0
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
-..+.|+++|..|+|||||+++|+|..+.......+|+.+..+.+. -..+.+.||..
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~-------~~~l~Dt~G~~ 63 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG-------DFILTDLPGFG 63 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec-------ceEEEeCCccc
Confidence 4568999999999999999999999875322234667766544322 13456788853
No 49
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.98 E-value=7.2e-05 Score=72.76 Aligned_cols=125 Identities=19% Similarity=0.329 Sum_probs=66.3
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHH-H
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT-D 124 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~-~ 124 (792)
.++|+++|..++||||++++|+|..+.+.+. ..+|+......+.... .. ..+++.||.... ......++... .
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~iiDtpG~~~~--~~~~~~~e~~~~~ 76 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KK-YTLIDTAGIRRK--GKVEEGIEKYSVL 76 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--ee-EEEEECCCCccc--cchhccHHHHHHH
Confidence 5789999999999999999999987544333 3455555443333321 12 246777874311 11111110000 0
Q ss_pred HhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
.... .. .+.++ -+.++| ++...... .+.+.+.+...+.+.|.|+||+|+++.
T Consensus 77 ~~~~---~~---------~~~d~-vi~v~d-----~~~~~~~~-~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 77 RTLK---AI---------ERADV-VLLVID-----ATEGITEQ-DLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHH---HH---------hhcCe-EEEEEe-----CCCCcchh-HHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 0000 00 01111 345566 33333222 233444444457899999999999865
No 50
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.96 E-value=7.1e-05 Score=72.64 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=38.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~ 107 (792)
.|++||++++||||||++|+|..+.+....+.|+......+... ...-+..+.+.||.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~D~~G~ 59 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLE-DKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEEC-CEEEEEEEEECCCc
Confidence 68999999999999999999998766545555554433333221 11123345677774
No 51
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.95 E-value=8.1e-05 Score=73.44 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=27.3
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
+-+|+|||++++||||||+++++..+.+....+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t 36 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT 36 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc
Confidence 358999999999999999999998775554433
No 52
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.95 E-value=0.00013 Score=68.95 Aligned_cols=55 Identities=24% Similarity=0.260 Sum_probs=37.0
Q ss_pred EEccCCCchhHHHHHHhCCCCc-cccCCCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 52 VVGSQSSGKSSVLEALVGRDFL-PRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 52 VvG~qssGKSSlLeal~G~~~l-Pr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
|+|..+|||||++++|++..+. ......+|..+....+.... ..-..+++.||..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dt~g~~ 56 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP--LGPVVLIDTPGID 56 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC--CCcEEEEECCCCC
Confidence 5899999999999999998765 33344566666555443221 2234567788854
No 53
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.95 E-value=5.2e-05 Score=85.64 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=43.4
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccC--CCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~--~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
+..|++||.+|||||||||+|++.. |.-+ ..+||.|+.-.+.... .....|+++||..
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k--~~vs~~p~TT~~p~~Giv~~~~--~~~i~~vDtPGi~ 218 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAK--PKVADYPFTTLVPNLGVVRVDD--ERSFVVADIPGLI 218 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCc--ccccCCCCCccCcEEEEEEeCC--CcEEEEEeCCCcc
Confidence 4689999999999999999999986 3333 4689999877665421 1224678999854
No 54
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.93 E-value=0.00011 Score=72.29 Aligned_cols=119 Identities=18% Similarity=0.070 Sum_probs=61.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCC-CCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHh
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~-~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~ 126 (792)
-+|+|+|++++|||||++.+++..|.+.-..+ .+++.......+. ......+.+.+|... +..+ +...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~l~Dt~g~~~--~~~~-------~~~~ 70 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRND--KRVKLQIWDTAGQER--YRTI-------TTAY 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC--EEEEEEEEECCChHH--HHHH-------HHHH
Confidence 37999999999999999999999874332211 1222221111111 011223445555321 1111 1111
Q ss_pred hcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
.. +.++ -|.++|. .....--+..+|++..++..+.....|.|.||+|+.+.
T Consensus 71 ~~---------------~~~~-~l~v~d~--~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 121 (165)
T cd01865 71 YR---------------GAMG-FILMYDI--TNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121 (165)
T ss_pred cc---------------CCcE-EEEEEEC--CCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcc
Confidence 11 1111 3445672 11111112345666666666667889999999999753
No 55
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.92 E-value=1.4e-05 Score=88.86 Aligned_cols=133 Identities=23% Similarity=0.274 Sum_probs=66.0
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCC-----CccccCCCCCcccEEEEEeeccCcccc
Q 003841 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRD-----FLPRGNDICTRRPLVLQLLQTKTDEEY 98 (792)
Q Consensus 24 ~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~-----~lPr~~~~~TR~P~~l~l~~~~~~~~~ 98 (792)
++-.+..++++.+..+. ...+ .|+|+|+.|+||||+||||-|.. .-|+|.--+|..|....--+. +.
T Consensus 16 ~~~~~~s~i~~~l~~~~---~~~l-~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~----pn 87 (376)
T PF05049_consen 16 NLQEVVSKIREALKDID---NAPL-NIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF----PN 87 (376)
T ss_dssp -HHHHHHHHHHHHHHHH---H--E-EEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-----TT
T ss_pred CHHHHHHHHHHHHHHhh---cCce-EEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC----CC
Confidence 34566778888777664 2233 89999999999999999998863 123333224444443332111 12
Q ss_pred eeeccCCCccccChhHHHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCC
Q 003841 99 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADP 178 (792)
Q Consensus 99 ~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp 178 (792)
..+-++||.+-.+|. ..+..+. -.+..-...|-| +..-+...+ ..+|+++-.
T Consensus 88 v~lWDlPG~gt~~f~-~~~Yl~~---------~~~~~yD~fiii-----------------~s~rf~~nd-v~La~~i~~ 139 (376)
T PF05049_consen 88 VTLWDLPGIGTPNFP-PEEYLKE---------VKFYRYDFFIII-----------------SSERFTEND-VQLAKEIQR 139 (376)
T ss_dssp EEEEEE--GGGSS---HHHHHHH---------TTGGG-SEEEEE-----------------ESSS--HHH-HHHHHHHHH
T ss_pred CeEEeCCCCCCCCCC-HHHHHHH---------ccccccCEEEEE-----------------eCCCCchhh-HHHHHHHHH
Confidence 234466776544442 1111111 012111111112 222333333 678888888
Q ss_pred CCCeEEEEeecCCC
Q 003841 179 DGYRTIGIITKLDI 192 (792)
Q Consensus 179 ~g~RTIGVlTK~D~ 192 (792)
.|.+...|.||.|.
T Consensus 140 ~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 140 MGKKFYFVRTKVDS 153 (376)
T ss_dssp TT-EEEEEE--HHH
T ss_pred cCCcEEEEEecccc
Confidence 89999999999886
No 56
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=97.90 E-value=9.9e-05 Score=81.81 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=70.1
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccC--CCCCcccEEEEEeeccCcccceeeccCCCccc--cChhHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF--YDFSEIRREIQA 121 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~--~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~--~d~~~i~~~i~~ 121 (792)
-++.|++||.+||||||||++|++.. |.-+ ..+|+.|..-.+.... .....+.++||... .....+....
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~~--~~~~~i~D~PGli~ga~~~~gLg~~f-- 230 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVDD--YKSFVIADIPGLIEGASEGAGLGHRF-- 230 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeCC--CcEEEEEeCCCccCCCCccccHHHHH--
Confidence 36899999999999999999999875 3322 3579999876554321 12235678888531 1111122111
Q ss_pred HHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhH-HHHHHHhhhCC--CCCeEEEEeecCCCCCC
Q 003841 122 QTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANS-DALQIAGIADP--DGYRTIGIITKLDIMDR 195 (792)
Q Consensus 122 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~-~al~la~~vDp--~g~RTIGVlTK~D~~~~ 195 (792)
-+.. ...++ -+.+||+- ..+ .+.+. .+....+.+++ .....|.|+||+|+.+.
T Consensus 231 --lrhi---------------e~a~v-lI~ViD~s--~~~-s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 231 --LKHI---------------ERTRL-LLHLVDIE--AVD-PVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE 286 (335)
T ss_pred --HHHh---------------hhcCE-EEEEEcCC--CCC-CHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence 1111 11111 35567721 111 13222 23444555665 36789999999999753
No 57
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.88 E-value=0.00014 Score=69.41 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=24.7
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
.+|+|+|.+++||||++++|.+..+.+.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~ 28 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN 28 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc
Confidence 3799999999999999999999986444
No 58
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.88 E-value=7e-05 Score=71.89 Aligned_cols=117 Identities=21% Similarity=0.167 Sum_probs=61.5
Q ss_pred EEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHhhcC
Q 003841 51 AVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGG 129 (792)
Q Consensus 51 vVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~ 129 (792)
|++|..++|||||+++|+|......+. ..+|+.......... ..-..+++.||...... .+.+.+...+......
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~DtpG~~~~~~-~~~~~~~~~~~~~~~~ 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG---GREFILIDTGGIEPDDE-GISKEIREQAELAIEE 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC---CeEEEEEECCCCCCchh-HHHHHHHHHHHHHHHh
Confidence 589999999999999999985322222 244554433332221 12235678888643211 2333333222221111
Q ss_pred CCCcCcCceEEEEecCCcceeEEeecCCCCCCCch--hhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 130 NKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDL--ANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 130 ~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl--~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
.+. -+.++|. ...+ .+....+++++ .+.+.|.|+||+|+.+.
T Consensus 77 -----~d~-----------ii~v~d~-----~~~~~~~~~~~~~~~~~---~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 77 -----ADV-----------ILFVVDG-----REGLTPADEEIAKYLRK---SKKPVILVVNKVDNIKE 120 (157)
T ss_pred -----CCE-----------EEEEEec-----cccCCccHHHHHHHHHh---cCCCEEEEEECcccCCh
Confidence 011 2334552 2111 12233444444 46899999999999864
No 59
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.87 E-value=0.00019 Score=68.73 Aligned_cols=57 Identities=30% Similarity=0.310 Sum_probs=37.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
.|+++|..++||||++++|+|..+...+. ..+|+.+....+... .....+++.||..
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~DtpG~~ 60 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG---GIPVRLIDTAGIR 60 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC---CEEEEEEECCCcC
Confidence 69999999999999999999987533332 345554443333221 2234567888854
No 60
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.86 E-value=0.00014 Score=71.13 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=23.7
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
.+|+|||.+++|||||++++++..|.
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~ 28 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYT 28 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57999999999999999999988763
No 61
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.84 E-value=0.00015 Score=73.45 Aligned_cols=117 Identities=17% Similarity=0.176 Sum_probs=60.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCCC-cccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHhh
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT-RRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~T-R~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~ 127 (792)
+|+|||++++|||||++.+++..|. .+.-..| .......+.......-...+.+.||... +..+ +....
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~-------~~~~~ 71 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFL-NGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER--FRSV-------THAYY 71 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-ccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH--HHHh-------hHHHc
Confidence 5899999999999999999998763 3221212 1111111111111111123445666321 1111 11111
Q ss_pred cCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchh-hHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLA-NSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~-~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
. +.++ -+.++|+- .. ..+. -..++..+++..+.+...|.|.||.|+..
T Consensus 72 ~---------------~ad~-~i~v~D~~--~~-~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 72 R---------------DAHA-LLLLYDIT--NK-ASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG 120 (191)
T ss_pred c---------------CCCE-EEEEEECC--CH-HHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh
Confidence 1 1122 35566721 00 1111 13356667777777889999999999964
No 62
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.82 E-value=0.0002 Score=69.09 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
+|+|||.+++||||+++++++..+.+
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~ 27 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE 27 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 68999999999999999999987644
No 63
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.81 E-value=0.0002 Score=69.50 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=24.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
+|+|||+.++|||||++++++..|.+.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~ 28 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSK 28 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC
Confidence 699999999999999999999987543
No 64
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.81 E-value=0.00015 Score=78.35 Aligned_cols=133 Identities=18% Similarity=0.232 Sum_probs=68.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCC-----CcccEEEEEeecc---Ccc-cceeeccCCCcccc-----ChhH
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC-----TRRPLVLQLLQTK---TDE-EYGEFLHLPGKRFY-----DFSE 114 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~-----TR~P~~l~l~~~~---~~~-~~~~~~~~~g~~~~-----d~~~ 114 (792)
.|+|||..++||||++|+|++..+.+...... ....+.+...... ... -...+++.||.... .+..
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~ 85 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKP 85 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHH
Confidence 69999999999999999999998765432111 0111122211110 000 12346678885421 1234
Q ss_pred HHHHHHHHHHHhhcC------CCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEee
Q 003841 115 IRREIQAQTDKEAGG------NKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIIT 188 (792)
Q Consensus 115 i~~~i~~~~~~~~g~------~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlT 188 (792)
|.+.|......+... +..+.+..+ ++.++.+. +....+...+ +.+.+.+.. +..+|.|+|
T Consensus 86 i~~yi~~q~~~~l~~e~~~~r~~~~~d~rv----------h~~ly~i~--~~~~~l~~~D-~~~lk~l~~-~v~vi~Vin 151 (276)
T cd01850 86 IVDYIDDQFDQYLREESRIKRNPRIPDTRV----------HACLYFIE--PTGHGLKPLD-IEFMKRLSK-RVNIIPVIA 151 (276)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCce----------EEEEEEEe--CCCCCCCHHH-HHHHHHHhc-cCCEEEEEE
Confidence 444444433322111 112222222 33333322 2233454444 455555543 688999999
Q ss_pred cCCCCCC
Q 003841 189 KLDIMDR 195 (792)
Q Consensus 189 K~D~~~~ 195 (792)
|+|++..
T Consensus 152 K~D~l~~ 158 (276)
T cd01850 152 KADTLTP 158 (276)
T ss_pred CCCcCCH
Confidence 9999864
No 65
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.79 E-value=8.1e-05 Score=73.91 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~l 73 (792)
.|+|+|..++||||++++|++..+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~ 25 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGD 25 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCC
Confidence 3899999999999999999998754
No 66
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.79 E-value=0.00025 Score=67.09 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=36.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC-CCCcccEEEEEeeccCcccceeeccCCCc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~-~~TR~P~~l~l~~~~~~~~~~~~~~~~g~ 107 (792)
.+|+++|..+||||||+++|++.. .|.... +.|+-.....+... .......+.+.||.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEED-GKTYKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEEC-CEEEEEEEEECCCc
Confidence 579999999999999999999998 455543 44443333222211 10112245677773
No 67
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.78 E-value=0.00014 Score=76.86 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=19.6
Q ss_pred EEEEccCCCchhHHHHHHhCC
Q 003841 50 VAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~G~ 70 (792)
|+++|..++|||||+|+|+..
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~ 22 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYT 22 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 899999999999999999864
No 68
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.78 E-value=0.00025 Score=69.56 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=24.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCcccc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~ 76 (792)
+|+|||+.++||||+|+.+++..|.+..
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~~~~~ 31 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKFMADC 31 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 6999999999999999999999875443
No 69
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.73 E-value=0.00036 Score=67.79 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=24.1
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
+|+|||++++||||++++|++..+.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~ 28 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSE 28 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 69999999999999999999998755
No 70
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.73 E-value=0.00039 Score=76.96 Aligned_cols=60 Identities=20% Similarity=0.181 Sum_probs=41.6
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~ 107 (792)
-++.|++||.+||||||||++|++.....-....+|+.|..-.+.... .....+.++||.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~--~~~~~i~D~PGl 215 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD--GRSFVIADIPGL 215 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC--ceEEEEEeCCCc
Confidence 358999999999999999999998752211223578888866554321 123356788885
No 71
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.73 E-value=7.4e-05 Score=78.19 Aligned_cols=30 Identities=37% Similarity=0.573 Sum_probs=23.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
+|+|||++++|||||+.+|+...| .-+.+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~ 30 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGK 30 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCc-CCCCCe
Confidence 489999999999999999996545 444443
No 72
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.72 E-value=0.00027 Score=69.24 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=25.6
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
.++.|+|+|.+++|||||++++++..+.+.
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~ 35 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPG 35 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC
Confidence 458999999999999999999997766443
No 73
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.72 E-value=0.00024 Score=73.57 Aligned_cols=146 Identities=21% Similarity=0.218 Sum_probs=74.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccC--CCCCcccEEEEEeeccCcccceeeccCCCccccCh--hHHHHHHHHHHH
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDF--SEIRREIQAQTD 124 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~--~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~--~~i~~~i~~~~~ 124 (792)
+|+++|..+|||||++|+|+|...++.+. ..||+..-...-... .....+++.||..-.+. .++.++|.....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~---g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVD---GRQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEET---TEEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeec---ceEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 69999999999999999999998766653 357765543333211 23345778898543322 344454443221
Q ss_pred HhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhH--HHHHHHhh-hCC-CCCeEEEEeecCCCCCCcchHH
Q 003841 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANS--DALQIAGI-ADP-DGYRTIGIITKLDIMDRGTDAR 200 (792)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~--~al~la~~-vDp-~g~RTIGVlTK~D~~~~gt~~~ 200 (792)
. .. .||++ -| || +| +. .++.. .+++..++ +.+ --.+||.|+|..|...... ..
T Consensus 79 ~---~~------------~g~ha-~l-lV-i~---~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~-~~ 135 (212)
T PF04548_consen 79 L---CS------------PGPHA-FL-LV-IP---LG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDS-LE 135 (212)
T ss_dssp H---TT------------T-ESE-EE-EE-EE---TT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT-HH
T ss_pred h---cc------------CCCeE-EE-EE-Ee---cC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccccc-HH
Confidence 1 01 13333 12 22 22 23 34322 33443333 222 2468999999999887543 33
Q ss_pred HHHh--------CCCcccccCeeEEecC
Q 003841 201 NLLL--------GKVIPLRLGYVGVVNR 220 (792)
Q Consensus 201 ~il~--------~~~~~L~lGy~~V~nr 220 (792)
+++. .-....+-.|+.+-|+
T Consensus 136 ~~l~~~~~~~l~~li~~c~~R~~~f~n~ 163 (212)
T PF04548_consen 136 DYLKKESNEALQELIEKCGGRYHVFNNK 163 (212)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEECCTT
T ss_pred HHHhccCchhHhHHhhhcCCEEEEEecc
Confidence 3333 1122355557777776
No 74
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.71 E-value=0.00022 Score=69.06 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.5
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|++++|||||+++|+|.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~ 23 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI 23 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc
Confidence 4899999999999999999985
No 75
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.70 E-value=0.0004 Score=79.24 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=41.4
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccC--CCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~--~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
++.|++||.+||||||||++|++.. |+-+ ..+|+.|..-.+.... .....+.++||..
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~~--~~~~~laD~PGli 217 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETDD--GRSFVMADIPGLI 217 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEeC--CceEEEEECCCCc
Confidence 4699999999999999999999875 4422 3578888755443221 1234677889863
No 76
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.70 E-value=0.00045 Score=70.79 Aligned_cols=24 Identities=29% Similarity=0.728 Sum_probs=22.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|+|||++++|||||++.+++..|
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f 25 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF 25 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Confidence 699999999999999999999887
No 77
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.69 E-value=0.0004 Score=68.01 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=24.0
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
...|+|||+.++|||||++++.+..|.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~ 29 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFS 29 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCc
Confidence 468999999999999999999987663
No 78
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.69 E-value=7.1e-05 Score=75.69 Aligned_cols=23 Identities=39% Similarity=0.788 Sum_probs=21.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
..|+|+|..++|||||+++|++.
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~ 26 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGK 26 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCcEeechhhhhh
Confidence 46999999999999999999866
No 79
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.68 E-value=0.00046 Score=67.61 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=26.2
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~T 81 (792)
.|+|||..++|||||+++|++..+.+....+++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~ 34 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG 34 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccc
Confidence 699999999999999999999876444333333
No 80
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.68 E-value=0.00016 Score=70.20 Aligned_cols=25 Identities=28% Similarity=0.640 Sum_probs=22.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
-+|.+||+.+||||||+.+|.|...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~ 26 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI 26 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC
Confidence 3799999999999999999999865
No 81
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.68 E-value=0.00022 Score=68.73 Aligned_cols=54 Identities=22% Similarity=0.205 Sum_probs=34.6
Q ss_pred EEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 52 VVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 52 VvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
++|..++||||++++|+|..+.+-....+|+.+....+.... .-..+++.||..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~liDtpG~~ 54 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG---KEIEIVDLPGTY 54 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC---eEEEEEECCCcc
Confidence 589999999999999999875332334556654333332211 123577888854
No 82
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.67 E-value=0.00045 Score=67.00 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=23.0
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~l 73 (792)
+|+|+|+.++||||+++++++..+-
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~ 26 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFS 26 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999763
No 83
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.67 E-value=0.00057 Score=72.52 Aligned_cols=204 Identities=19% Similarity=0.177 Sum_probs=108.6
Q ss_pred CCCeEE-EEccCCCchhHHHHHHhCCCCcccc-CCCCCcccEEEEEeeccCcccceeeccCCCccc---cChhHHHHHHH
Q 003841 46 ELPQVA-VVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF---YDFSEIRREIQ 120 (792)
Q Consensus 46 ~lPqIv-VvG~qssGKSSlLeal~G~~~lPr~-~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~---~d~~~i~~~i~ 120 (792)
.-|-++ ++|..++|||||+|||.+...-|+. .+.||+-++....... .+.-.+.+.||.+. .|- +.+..+.
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~---~~~l~lwDtPG~gdg~~~D~-~~r~~~~ 112 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD---GENLVLWDTPGLGDGKDKDA-EHRQLYR 112 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc---ccceEEecCCCcccchhhhH-HHHHHHH
Confidence 467777 9999999999999999975555666 4778886655544332 24556678888653 221 1222222
Q ss_pred HHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCC-CchhhHH--HHHH-HhhhCCCCCeEEEEeecCCCCCCc
Q 003841 121 AQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPAN-SDLANSD--ALQI-AGIADPDGYRTIGIITKLDIMDRG 196 (792)
Q Consensus 121 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~-~Dl~~~~--al~l-a~~vDp~g~RTIGVlTK~D~~~~g 196 (792)
+...+ . + .-|-|+| +. .|+.+.+ +..+ ..-+| .|+|.|+|-.|+..++
T Consensus 113 d~l~~---~------D-----------LvL~l~~-----~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 113 DYLPK---L------D-----------LVLWLIK-----ADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPG 164 (296)
T ss_pred HHhhh---c------c-----------EEEEecc-----CCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccc
Confidence 22111 0 0 1333444 22 2222221 1111 22222 8999999999998877
Q ss_pred chHHHHHhCCCcccccCeeEEecCChhhhhcccCHHHHHHHHHHhhc-CCCCCCCc-ccccChhHHHHHHHHHHHHHHHH
Q 003841 197 TDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFR-SRPVYNGL-ADRCGVPQLAKKLNQILVQHIKA 274 (792)
Q Consensus 197 t~~~~il~~~~~~L~lGy~~V~nrsq~di~~~~s~~ea~~~E~~fF~-~~~~~~~l-~~~~Gi~~L~~~L~~~L~~~I~~ 274 (792)
.+|. ...+.-...+.+. +++.-..=.+||. .||.|..- ..-+|+..|..+|-+.|-.+-+.
T Consensus 165 ~~W~---------------~~~~~p~~a~~qf--i~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs 227 (296)
T COG3596 165 REWD---------------SAGHQPSPAIKQF--IEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEARS 227 (296)
T ss_pred cccc---------------cccCCCCHHHHHH--HHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcccccc
Confidence 5442 1111111111111 1111112245554 46766543 23489999888887777655544
Q ss_pred h-hHHHHHHHHHHHHHHHHHHHHcC
Q 003841 275 I-LPGLKSRISSALVSVAKEHASYG 298 (792)
Q Consensus 275 ~-LP~l~~~I~~~l~~~~~eL~~lg 298 (792)
- .+.+.+..+......+.+..-++
T Consensus 228 ~~a~~~~d~~~~~~~~~q~~~~~~~ 252 (296)
T COG3596 228 PLAARLQDELRTQSARTQARTQFLE 252 (296)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhhc
Confidence 2 24444555555544444444443
No 84
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.67 E-value=0.0001 Score=77.88 Aligned_cols=127 Identities=20% Similarity=0.186 Sum_probs=75.0
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCc-ccceeeccCCCccccChh-HHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTD-EEYGEFLHLPGKRFYDFS-EIRREIQAQT 123 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~-~~~~~~~~~~g~~~~d~~-~i~~~i~~~~ 123 (792)
..|++++.|.+|+||||||+.++..+.. ..++-. -|-.++.++.... ..| ..+++||+++.... +..+....-+
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~-~~t~k~--K~g~Tq~in~f~v~~~~-~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNI-ADTSKS--KNGKTQAINHFHVGKSW-YEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhh-hhhcCC--CCccceeeeeeeccceE-EEEecCCcccccCCccCcchHhHhH
Confidence 4579999999999999999999988643 332221 2344555555442 334 45789996542211 1111111111
Q ss_pred HHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
..+.-+.. .-+--+.|||.-|..-+.|.....|+. ..+-.-..|+||+|++..
T Consensus 211 ~~Y~leR~-------------nLv~~FLLvd~sv~i~~~D~~~i~~~g------e~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 211 KSYLLERE-------------NLVRVFLLVDASVPIQPTDNPEIAWLG------ENNVPMTSVFTKCDKQKK 263 (320)
T ss_pred HHHHHhhh-------------hhheeeeeeeccCCCCCCChHHHHHHh------hcCCCeEEeeehhhhhhh
Confidence 11110001 012356788866666777765555444 567888999999999864
No 85
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.66 E-value=0.00043 Score=67.29 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=26.0
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
+|+|+|..++|||||++.|++..+.+....+
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~ 32 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHT 32 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCc
Confidence 6899999999999999999998875554433
No 86
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.66 E-value=0.00014 Score=74.88 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.8
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
+|+|||..++|||||+|+|++..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~ 23 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDS 23 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHc
Confidence 58999999999999999998653
No 87
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.64 E-value=0.00035 Score=80.92 Aligned_cols=59 Identities=24% Similarity=0.227 Sum_probs=41.9
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~ 107 (792)
-+..|++||.+||||||||++|++...-.-.....|+.|..-.+... +....+.++||.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~---~~~f~laDtPGl 216 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAG---DTRFTVADVPGL 216 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEEC---CeEEEEEECCCC
Confidence 45899999999999999999999985321122457888876555432 123456788885
No 88
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.64 E-value=0.00012 Score=75.01 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.4
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|++||..++|||||+++|++.
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~ 25 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKV 25 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 89
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.63 E-value=0.00029 Score=75.73 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.1
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|++||..++|||||+|+|+..
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~ 25 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLF 25 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5899999999999999999854
No 90
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.62 E-value=0.00062 Score=64.95 Aligned_cols=25 Identities=32% Similarity=0.702 Sum_probs=23.2
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~l 73 (792)
+|++||.+++|||||+++|+|..|.
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~ 25 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFS 25 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCC
Confidence 5899999999999999999999874
No 91
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.59 E-value=0.00026 Score=75.88 Aligned_cols=21 Identities=43% Similarity=0.643 Sum_probs=19.6
Q ss_pred EEEEccCCCchhHHHHHHhCC
Q 003841 50 VAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~G~ 70 (792)
|++||..++|||||+|+|++.
T Consensus 2 i~ivG~~gsGKStL~~~Ll~~ 22 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYA 22 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999864
No 92
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.58 E-value=0.0011 Score=78.25 Aligned_cols=129 Identities=15% Similarity=0.121 Sum_probs=70.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCccccChhH-HHHHHHHHHHH
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSE-IRREIQAQTDK 125 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~-i~~~i~~~~~~ 125 (792)
..|+|||.+|+||||++|+|+|...+..+. ..+|....++..... .....+++.||......++ ..+++.....+
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id---G~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ---GVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC---CceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 479999999999999999999997555543 245554444432211 1234678899865432222 22222222222
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCC--CCCeEEEEeecCCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADP--DGYRTIGIITKLDIMDR 195 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp--~g~RTIGVlTK~D~~~~ 195 (792)
.... .+|++ -| +|| .+..-..|.....+++..+++=. --.+||.|+|..|.+++
T Consensus 196 ~Lsk-------------~gpDV-VL-lV~-RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 196 FIKK-------------NPPDI-VL-YVD-RLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHhc-------------CCCCE-EE-EEE-eCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 2111 12332 22 333 11122344444455555443221 24689999999999963
No 93
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.58 E-value=0.00013 Score=78.49 Aligned_cols=19 Identities=16% Similarity=0.508 Sum_probs=18.3
Q ss_pred EEEEccCCCchhHHHHHHh
Q 003841 50 VAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~ 68 (792)
|++||..++|||||+|+|+
T Consensus 2 v~ivGh~~~GKTtL~~~Ll 20 (270)
T cd01886 2 IGIIAHIDAGKTTTTERIL 20 (270)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 7999999999999999996
No 94
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.58 E-value=0.001 Score=64.51 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=24.8
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~ 77 (792)
+|+|+|.+++||||++++|++..+.+...
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~ 30 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLA 30 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccC
Confidence 68999999999999999999997644333
No 95
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.57 E-value=0.0002 Score=70.92 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=20.2
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|++||..++|||||+++|++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~ 23 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLEL 23 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHH
Confidence 3899999999999999999874
No 96
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.57 E-value=0.00073 Score=65.56 Aligned_cols=25 Identities=40% Similarity=0.563 Sum_probs=22.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~l 73 (792)
.|+|||+.++|||||++++++..|.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~ 26 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT 26 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5899999999999999999998764
No 97
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.55 E-value=0.0004 Score=67.26 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~l 73 (792)
+|+++|..++|||||++++++..|.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~ 26 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV 26 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc
Confidence 6999999999999999999988763
No 98
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.54 E-value=0.00063 Score=67.04 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
+|++||..++|||||+++|.|..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~ 25 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY 25 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999999874
No 99
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.52 E-value=0.00068 Score=65.20 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=25.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTR 82 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR 82 (792)
+|+|+|..++|||||+++|++..+ +......|.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~ 33 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIE 33 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChh
Confidence 489999999999999999998874 344333444
No 100
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.52 E-value=0.00088 Score=67.35 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.7
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
..|+|+|+.++|||||++.+++..|.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~ 26 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFS 26 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 37999999999999999999999874
No 101
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.52 E-value=0.00095 Score=65.01 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=23.1
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~l 73 (792)
+|+|+|+.++|||||++++++..|.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~ 26 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV 26 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC
Confidence 6999999999999999999998764
No 102
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.51 E-value=0.00062 Score=68.64 Aligned_cols=25 Identities=40% Similarity=0.686 Sum_probs=23.2
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~l 73 (792)
+|+|||+.++|||||++++++..|.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~ 26 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFL 26 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcC
Confidence 6999999999999999999998764
No 103
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.49 E-value=0.00051 Score=63.89 Aligned_cols=21 Identities=48% Similarity=0.860 Sum_probs=19.3
Q ss_pred EEccCCCchhHHHHHHhCCCC
Q 003841 52 VVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 52 VvG~qssGKSSlLeal~G~~~ 72 (792)
|||..++|||||+++|.+...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~ 21 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEF 21 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCc
Confidence 689999999999999999864
No 104
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.47 E-value=0.00046 Score=67.77 Aligned_cols=53 Identities=25% Similarity=0.266 Sum_probs=33.9
Q ss_pred EEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCc
Q 003841 52 VVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (792)
Q Consensus 52 VvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~ 107 (792)
++|++||||||||++|+|..+ ..+. ..+|+.|..-.+.... .....+.+.||.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~--~~~~~i~DtpG~ 54 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPD--GARIQVADIPGL 54 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCC--CCeEEEEecccc
Confidence 589999999999999999975 3332 3456666543322110 122356777874
No 105
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.42 E-value=0.0012 Score=64.04 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=23.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.+|+|||+.++|||||++++++..|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~ 26 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF 26 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4799999999999999999998766
No 106
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.41 E-value=0.0017 Score=64.38 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=25.1
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
..+|+|||+.++|||||++.+++..|.+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~ 32 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPK 32 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcc
Confidence 35899999999999999999999877443
No 107
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.41 E-value=0.00039 Score=68.24 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=45.8
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeec
Q 003841 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFL 102 (792)
Q Consensus 24 ~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~ 102 (792)
.+-.+++.|.+.++.. ..-.-..|+|||.+|+|||||+|+|.|....+++. ..+||....+.+. ....++
T Consensus 82 ~~~~L~~~l~~~~~~~---~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~------~~~~li 152 (157)
T cd01858 82 GKGSLIQLLRQFSKLH---SDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLM------KRIYLI 152 (157)
T ss_pred cHHHHHHHHHHHHhhh---ccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcC------CCEEEE
Confidence 3445566665544311 11122468899999999999999999987766655 2457654443321 223566
Q ss_pred cCCC
Q 003841 103 HLPG 106 (792)
Q Consensus 103 ~~~g 106 (792)
+.||
T Consensus 153 DtPG 156 (157)
T cd01858 153 DCPG 156 (157)
T ss_pred ECcC
Confidence 7776
No 108
>PLN03110 Rab GTPase; Provisional
Probab=97.40 E-value=0.0014 Score=67.86 Aligned_cols=27 Identities=26% Similarity=0.564 Sum_probs=24.2
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
+-.|+|||++++|||||++.|++..|.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~ 38 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFC 38 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 358999999999999999999998763
No 109
>CHL00071 tufA elongation factor Tu
Probab=97.40 E-value=0.00029 Score=80.34 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=21.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
-.|+++|..++|||||+++|++.
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~ 35 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMT 35 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999975
No 110
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.38 E-value=0.0012 Score=64.06 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=22.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|+|||+.++|||||++++++..+
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~~ 27 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSYF 27 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 799999999999999999998865
No 111
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.38 E-value=0.0019 Score=62.61 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|+|||+.++|||||++.|++..+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~ 24 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENA 24 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCC
Confidence 589999999999999999998753
No 112
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=97.38 E-value=0.002 Score=64.72 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=23.0
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~l 73 (792)
+|++||.+++|||||++++++..|.
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~ 29 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFV 29 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcC
Confidence 6999999999999999999988764
No 113
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.38 E-value=0.0011 Score=63.77 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=23.6
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
.+|+|+|+.++|||||++++++..|.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~ 27 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV 27 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc
Confidence 47999999999999999999998764
No 114
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.37 E-value=0.00066 Score=82.95 Aligned_cols=117 Identities=22% Similarity=0.277 Sum_probs=67.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCccccChhH------HHHHHH
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSE------IRREIQ 120 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~------i~~~i~ 120 (792)
.+|++||..|+|||||+|+|+|... -++. ..+|..+.+..+... +.-..++++||.. ++.. ..+.+.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~---~~~i~lvDtPG~y--sl~~~~~~~s~~E~i~ 77 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTT---DHQVTLVDLPGTY--SLTTISSQTSLDEQIA 77 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcC---ceEEEEEECCCcc--ccccccccccHHHHHH
Confidence 5799999999999999999999865 3333 345665544444322 2234678999853 2221 111221
Q ss_pred HHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 121 AQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 121 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
. ..+.. ..+++ -+.+|| ++. +.. -+.+..++...|.++|.|+||.|+.++
T Consensus 78 ~--~~l~~--------------~~aD~-vI~VvD-----at~-ler--~l~l~~ql~e~giPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 78 C--HYILS--------------GDADL-LINVVD-----ASN-LER--NLYLTLQLLELGIPCIVALNMLDIAEK 127 (772)
T ss_pred H--HHHhc--------------cCCCE-EEEEec-----CCc-chh--hHHHHHHHHHcCCCEEEEEEchhhhhc
Confidence 1 11111 12333 245677 432 221 123344445568999999999998743
No 115
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.37 E-value=0.0011 Score=67.15 Aligned_cols=21 Identities=24% Similarity=0.599 Sum_probs=20.1
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
.|++||..++|||||+++|++
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~ 24 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLK 24 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHH
Confidence 699999999999999999996
No 116
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.37 E-value=0.00068 Score=64.65 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=22.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|++||++++|||||+++|+|..+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 699999999999999999999865
No 117
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.37 E-value=0.0017 Score=65.35 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=35.8
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~ 107 (792)
-+.|+++|.+++||||+++.++|..+. . ...|+.|....+... ..-..+.+.+|.
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~-~--~~~t~~~~~~~~~~~---~~~~~~~D~~G~ 71 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLA-Q--HQPTQHPTSEELAIG---NIKFTTFDLGGH 71 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCc-c--cCCccccceEEEEEC---CEEEEEEECCCC
Confidence 489999999999999999999998652 1 134555554333221 112245566774
No 118
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.35 E-value=0.0017 Score=62.81 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=22.2
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|+|+|..++||||++++++|..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~ 24 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV 24 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999973
No 119
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0014 Score=76.69 Aligned_cols=158 Identities=25% Similarity=0.282 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCC-
Q 003841 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPG- 106 (792)
Q Consensus 28 ~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g- 106 (792)
..++|.-+.+.+- -.--.||+.|+-|+|||+|+||++-.+.||-|.|.||-|=+++.=. +.-.+++-.+|
T Consensus 94 ~~~~l~~i~~~l~----r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Vega-----dG~e~vl~~~~s 164 (749)
T KOG0448|consen 94 YEDKLDAIDEVLA----RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGA-----DGAEAVLATEGS 164 (749)
T ss_pred HHHHHHHHHHHHh----hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeeccc-----CCcceeeccCCC
Confidence 3455555444442 2345899999999999999999999999999999999875544321 11112333444
Q ss_pred ccccChhHHHHHHHHHHHHhhcCCCCcCcCceEEEEecCCc------ceeEEeecC------------------------
Q 003841 107 KRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHV------LDITLVDLP------------------------ 156 (792)
Q Consensus 107 ~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~------~~LtlVDLP------------------------ 156 (792)
+.-.|..-+...+.+.-.. +. --..--++|+-|+- -++.|||-|
T Consensus 165 ~ek~d~~ti~~~~haL~~~-----~~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVl 238 (749)
T KOG0448|consen 165 EEKIDMKTINQLAHALKPD-----KD-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVL 238 (749)
T ss_pred cccccHHHHhHHHHhcCcc-----cc-cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEE
Confidence 1122322233222221100 00 11223455665552 478899999
Q ss_pred CCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHH
Q 003841 157 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARN 201 (792)
Q Consensus 157 V~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~ 201 (792)
|+-|.+-++.++ .++.+.+-....-...+.+|||..-...++.+
T Consensus 239 V~NaEntlt~se-k~Ff~~vs~~KpniFIlnnkwDasase~ec~e 282 (749)
T KOG0448|consen 239 VVNAENTLTLSE-KQFFHKVSEEKPNIFILNNKWDASASEPECKE 282 (749)
T ss_pred EecCccHhHHHH-HHHHHHhhccCCcEEEEechhhhhcccHHHHH
Confidence 555666666555 56666666554445555688999877666643
No 120
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.33 E-value=0.0017 Score=68.28 Aligned_cols=36 Identities=31% Similarity=0.353 Sum_probs=27.2
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccE
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPL 85 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~ 85 (792)
+|++||.+|+|||||+++|+|... ..+. ..+|..|.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~ 38 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCV 38 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccce
Confidence 689999999999999999999863 2222 34555544
No 121
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.31 E-value=0.0028 Score=65.55 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=24.6
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
..|+|||++++||||||+.+++..|.+.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~ 30 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV 30 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 4799999999999999999999876443
No 122
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.30 E-value=0.001 Score=78.94 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=31.5
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCc
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTR 82 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR 82 (792)
+.-|-|+|+|..++||||||++|+|..+.....|..|+
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq 39 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQ 39 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceec
Confidence 45799999999999999999999999775544565665
No 123
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.30 E-value=0.0049 Score=61.85 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=32.1
Q ss_pred HhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEE
Q 003841 38 QLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (792)
Q Consensus 38 ~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~ 86 (792)
.+|.. ..-.+|+++|.++||||||+++|++..+. ....|..|..
T Consensus 12 ~~~~~--~~~~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~ 55 (190)
T cd00879 12 SLGLY--NKEAKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTS 55 (190)
T ss_pred Hhhcc--cCCCEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcce
Confidence 35543 56799999999999999999999987642 2234555543
No 124
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.29 E-value=0.0019 Score=63.80 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=23.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
..|+|||++++|||||++++++..+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~ 27 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF 27 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 5799999999999999999998876
No 125
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.29 E-value=0.0023 Score=66.15 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=22.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|+|||+.++|||||++.+++..|
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~ 25 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF 25 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998876
No 126
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.28 E-value=0.0024 Score=62.77 Aligned_cols=24 Identities=33% Similarity=0.745 Sum_probs=22.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|+|||+.++|||||++++++..|
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~ 25 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 689999999999999999999876
No 127
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.27 E-value=0.0028 Score=61.84 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=23.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
..|+|||+.++|||||+++++...|.+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~ 28 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVE 28 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCc
Confidence 379999999999999999998665533
No 128
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.26 E-value=0.0046 Score=60.13 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.7
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
+|+|||+.+||||||+++|.+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999985
No 129
>PRK00007 elongation factor G; Reviewed
Probab=97.26 E-value=0.00085 Score=81.47 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=64.7
Q ss_pred CCCeEEEEccCCCchhHHHHHHh---CCCCcc--cc-------------CCCCCcccEEEEEeeccCcccceeeccCCCc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALV---GRDFLP--RG-------------NDICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~---G~~~lP--r~-------------~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~ 107 (792)
.+..|+|||..++|||||+|+|+ |..... +. ....|+....+.+... +....+++.||.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~---~~~~~liDTPG~ 85 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK---DHRINIIDTPGH 85 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC---CeEEEEEeCCCc
Confidence 45689999999999999999996 431100 00 1122333322332221 123345666763
Q ss_pred cccChhHHHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEe
Q 003841 108 RFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGII 187 (792)
Q Consensus 108 ~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVl 187 (792)
. ||.. ++. +.... . ++ -+.+|| |...+..++ ..+++.+...|.+.|.|+
T Consensus 86 ~--~f~~---ev~----~al~~----~-----------D~-~vlVvd-----a~~g~~~qt-~~~~~~~~~~~~p~iv~v 134 (693)
T PRK00007 86 V--DFTI---EVE----RSLRV----L-----------DG-AVAVFD-----AVGGVEPQS-ETVWRQADKYKVPRIAFV 134 (693)
T ss_pred H--HHHH---HHH----HHHHH----c-----------CE-EEEEEE-----CCCCcchhh-HHHHHHHHHcCCCEEEEE
Confidence 2 2211 111 10000 0 01 344556 666665554 556666667789999999
Q ss_pred ecCCCCCCc
Q 003841 188 TKLDIMDRG 196 (792)
Q Consensus 188 TK~D~~~~g 196 (792)
||+|+.+..
T Consensus 135 NK~D~~~~~ 143 (693)
T PRK00007 135 NKMDRTGAD 143 (693)
T ss_pred ECCCCCCCC
Confidence 999998643
No 130
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.25 E-value=0.0054 Score=59.39 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=22.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|+++|..++|||||+++|++..+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~ 24 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL 24 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc
Confidence 589999999999999999999976
No 131
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.24 E-value=0.0018 Score=63.33 Aligned_cols=25 Identities=28% Similarity=0.648 Sum_probs=22.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~l 73 (792)
.|+|||+.++|||||++++++..|.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~ 25 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI 25 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc
Confidence 4899999999999999999887663
No 132
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.24 E-value=0.0023 Score=62.83 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=22.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|+|||++++|||||++++++..|
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f 26 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTF 26 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999999876
No 133
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.24 E-value=0.0033 Score=64.13 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=23.2
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
.|||||+.++|||||++.+++..|.+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~ 27 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQ 27 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 69999999999999999999887633
No 134
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.22 E-value=0.0025 Score=63.33 Aligned_cols=24 Identities=46% Similarity=0.657 Sum_probs=22.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|++||..++|||||++.+++..+
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~ 26 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999998875
No 135
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.21 E-value=0.0018 Score=63.22 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=22.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.|+|+|..++|||||+++|++..+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~ 25 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999999986
No 136
>PLN03127 Elongation factor Tu; Provisional
Probab=97.21 E-value=0.00053 Score=78.94 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.8
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.--.|+++|..++|||||+++|+|.
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~ 84 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKV 84 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhH
Confidence 3456999999999999999999854
No 137
>PLN03108 Rab family protein; Provisional
Probab=97.20 E-value=0.0036 Score=64.54 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=25.8
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCcccc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~ 76 (792)
.-.|+|||+.++|||||++.|++..|.+..
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~ 35 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH 35 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCC
Confidence 358999999999999999999998775543
No 138
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.18 E-value=0.0033 Score=62.36 Aligned_cols=26 Identities=42% Similarity=0.660 Sum_probs=23.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
-.|+|||+.++|||||++.+++..|.
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~ 30 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFS 30 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 47999999999999999999998873
No 139
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.17 E-value=0.0048 Score=62.89 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=24.2
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
...|+|||+.++|||||++.+.+..|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~ 31 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF 31 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 57899999999999999999999876
No 140
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.15 E-value=0.003 Score=61.85 Aligned_cols=27 Identities=22% Similarity=0.556 Sum_probs=24.0
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
+|+|||+.++|||||++.+++..|-|.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~ 28 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQ 28 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC
Confidence 699999999999999999998877444
No 141
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.13 E-value=0.0018 Score=66.98 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.|+|||..++|||||+++|++..+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~ 25 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTH 25 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999998754
No 142
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.13 E-value=0.0028 Score=61.84 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.3
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|+|||.+++|||||++.|++.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh
Confidence 3899999999999999999875
No 143
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.12 E-value=0.0016 Score=77.36 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-|+++|..++|||||+++|+|..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~ 24 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA 24 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 38999999999999999999853
No 144
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.12 E-value=0.003 Score=63.88 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.5
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|+++|+.++|||||+++|++.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~ 23 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEI 23 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhc
Confidence 5899999999999999999984
No 145
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.11 E-value=0.0044 Score=61.13 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=22.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
||++||++++|||||+..+++..|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~ 24 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS 24 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC
Confidence 799999999999999999998765
No 146
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.10 E-value=0.0017 Score=78.91 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=21.6
Q ss_pred CCCeEEEEccCCCchhHHHHHHhC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G 69 (792)
.+..|+|||..++|||||+|+|++
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~ 32 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILF 32 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999964
No 147
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.10 E-value=0.00057 Score=78.25 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.|++||..++|||||+++|++..
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~ 30 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYET 30 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHc
Confidence 368999999999999999998663
No 148
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.09 E-value=0.0028 Score=61.70 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=23.8
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
+|+++|+.++||||+++.+.+..|.+.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~ 29 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEK 29 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 799999999999999999998876443
No 149
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.09 E-value=0.0057 Score=59.45 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|+|||.+++|||||+++|....+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~ 24 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV 24 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC
Confidence 589999999999999999977765
No 150
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.09 E-value=0.0064 Score=60.19 Aligned_cols=28 Identities=25% Similarity=0.565 Sum_probs=24.7
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
..-++|+|+|..++|||||+++|+|..+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~ 39 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI 39 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC
Confidence 3557999999999999999999998854
No 151
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.08 E-value=0.0043 Score=61.05 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=24.1
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
.|++||..++||||+++++++..|.+.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~ 29 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIES 29 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcc
Confidence 699999999999999999998887543
No 152
>COG2262 HflX GTPases [General function prediction only]
Probab=97.07 E-value=0.0099 Score=66.43 Aligned_cols=129 Identities=18% Similarity=0.243 Sum_probs=70.1
Q ss_pred CCCCCCeEEEEccCCCchhHHHHHHhCCCCccccCC-CCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHH
Q 003841 43 STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQA 121 (792)
Q Consensus 43 ~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~-~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 121 (792)
..-..|+|++||=.|||||||+|+|+|... +..+. -.|=.|+-=++.-.. ....-+.+.-|+. .+++.++.+
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LFATLdpttR~~~l~~--g~~vlLtDTVGFI----~~LP~~LV~ 260 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADV-YVADQLFATLDPTTRRIELGD--GRKVLLTDTVGFI----RDLPHPLVE 260 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCe-eccccccccccCceeEEEeCC--CceEEEecCccCc----ccCChHHHH
Confidence 346899999999999999999999999975 44432 334333322221110 0001111222321 123333332
Q ss_pred HHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc-hh-hH-HHHHHHhhhCCCCCeEEEEeecCCCCCCc
Q 003841 122 QTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD-LA-NS-DALQIAGIADPDGYRTIGIITKLDIMDRG 196 (792)
Q Consensus 122 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D-l~-~~-~al~la~~vDp~g~RTIGVlTK~D~~~~g 196 (792)
+...-... +..+|+ -|.+|| |..+ +. .. ....+.++++-...++|-|+||.|++...
T Consensus 261 AFksTLEE------------~~~aDl-llhVVD-----aSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~ 320 (411)
T COG2262 261 AFKSTLEE------------VKEADL-LLHVVD-----ASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDE 320 (411)
T ss_pred HHHHHHHH------------hhcCCE-EEEEee-----cCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCch
Confidence 22111000 011122 466688 4443 22 11 23567778777779999999999998643
No 153
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.06 E-value=0.001 Score=75.39 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
-.|+++|..++|||||+++|++.
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~ 35 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTV 35 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhh
Confidence 45999999999999999999865
No 154
>PRK12739 elongation factor G; Reviewed
Probab=97.05 E-value=0.002 Score=78.28 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=21.4
Q ss_pred CCCeEEEEccCCCchhHHHHHHhC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G 69 (792)
.+..|+|||..++|||||+|+|+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~ 30 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILY 30 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999964
No 155
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.04 E-value=0.0049 Score=63.47 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=23.0
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~l 73 (792)
||||||+.++||||++..++.-.|-
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~ 26 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC 26 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC
Confidence 7999999999999999999987763
No 156
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.01 E-value=0.0028 Score=76.86 Aligned_cols=117 Identities=20% Similarity=0.329 Sum_probs=64.7
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeecc-CcccceeeccCCCccccChhHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTK-TDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~-~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~ 124 (792)
..|.|+|+|..++||||||++|.+..+.....++.|.-.....+.... .......|++.||.. +|...+.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe--~F~~mr~------- 313 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE--AFSSMRS------- 313 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHH--HHHHHHH-------
Confidence 568999999999999999999998876332233444322212211110 011234577888853 2322221
Q ss_pred HhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCch--hhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDL--ANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl--~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
+... .+ ++ -+.+|| +.... .+.++++.+ ...+.+.|.|+||+|+.+.
T Consensus 314 rg~~----~a-----------Di-aILVVD-----A~dGv~~QT~E~I~~~---k~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 314 RGAN----VT-----------DI-AILIIA-----ADDGVKPQTIEAINYI---QAANVPIIVAINKIDKANA 362 (742)
T ss_pred HHHH----HC-----------CE-EEEEEE-----CcCCCChhhHHHHHHH---HhcCceEEEEEECCCcccc
Confidence 1111 11 11 234456 43332 223444444 3457899999999999753
No 157
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.01 E-value=0.0026 Score=66.53 Aligned_cols=22 Identities=14% Similarity=0.486 Sum_probs=19.9
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|||.-.+|||||+++|+..
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~ 23 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLAS 23 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 158
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.99 E-value=0.0011 Score=64.87 Aligned_cols=56 Identities=32% Similarity=0.341 Sum_probs=42.8
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCC
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPG 106 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g 106 (792)
....+|+|+|.+|+||||++|+|+|....+.+. ..+||++..+.+. ....+++.||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~------~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD------NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec------CCEEEEECCC
Confidence 456899999999999999999999986556555 3788888776542 2345667776
No 159
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=96.99 E-value=0.0056 Score=63.78 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|+|||+.++|||||++.+++..|
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~ 25 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEY 25 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCc
Confidence 699999999999999999976655
No 160
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.98 E-value=0.0043 Score=63.15 Aligned_cols=26 Identities=19% Similarity=0.531 Sum_probs=23.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
+|+|||+.++|||||++++++..+.+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~ 26 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP 26 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc
Confidence 58999999999999999999987643
No 161
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=96.98 E-value=0.0073 Score=59.99 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=23.1
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~l 73 (792)
.|+|||++++|||||++++++..|.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~ 26 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD 26 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6999999999999999999998763
No 162
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=96.97 E-value=0.0028 Score=62.57 Aligned_cols=24 Identities=21% Similarity=0.548 Sum_probs=21.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|+|||++++|||||+++++...+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~ 25 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999987655
No 163
>PLN03118 Rab family protein; Provisional
Probab=96.97 E-value=0.0048 Score=63.48 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=23.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.+|+|||+.++|||||+++|++..+
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~ 39 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSV 39 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC
Confidence 4999999999999999999999865
No 164
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.97 E-value=0.0046 Score=62.44 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|+|||+.++|||||++.+++-.|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f 24 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF 24 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC
Confidence 489999999999999999997766
No 165
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.96 E-value=0.0016 Score=65.84 Aligned_cols=71 Identities=25% Similarity=0.294 Sum_probs=47.0
Q ss_pred CcchHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCcc-------c-cC-CCCCcccEEEEEeec
Q 003841 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLP-------R-GN-DICTRRPLVLQLLQT 92 (792)
Q Consensus 22 ~~~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lP-------r-~~-~~~TR~P~~l~l~~~ 92 (792)
+..+-++++.|.+.+. .-..|++||.+|+|||||+|+|.+..... . +. ..+||-|..+.+..
T Consensus 110 ~~gi~eL~~~l~~~l~--------~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~- 180 (190)
T cd01855 110 GWGVEELINAIKKLAK--------KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN- 180 (190)
T ss_pred CCCHHHHHHHHHHHhh--------cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-
Confidence 3445566666655432 23589999999999999999999864321 1 11 25788887776632
Q ss_pred cCcccceeeccCCC
Q 003841 93 KTDEEYGEFLHLPG 106 (792)
Q Consensus 93 ~~~~~~~~~~~~~g 106 (792)
-..+++.||
T Consensus 181 -----~~~~~DtPG 189 (190)
T cd01855 181 -----GKKLYDTPG 189 (190)
T ss_pred -----CCEEEeCcC
Confidence 135677777
No 166
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=96.96 E-value=0.0091 Score=58.50 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=24.0
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
+|+|||+.++|||||+..+++..|.+.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~ 28 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSS 28 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCC
Confidence 689999999999999999999887443
No 167
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.96 E-value=0.013 Score=63.06 Aligned_cols=127 Identities=18% Similarity=0.228 Sum_probs=74.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC-CCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHhh
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~-~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~ 127 (792)
+|+|||.+|+|||+|.|.++|.+..|++... +||+-+-=.+. . .+...+|.+.||-... ..++..-. .+....
T Consensus 74 ~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~t-s--~eTQlvf~DTPGlvs~--~~~r~~~l-~~s~lq 147 (379)
T KOG1423|consen 74 YVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIIT-S--GETQLVFYDTPGLVSK--KMHRRHHL-MMSVLQ 147 (379)
T ss_pred EEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEe-c--CceEEEEecCCccccc--chhhhHHH-HHHhhh
Confidence 8999999999999999999999998998864 55654322211 1 2345678888884321 12221110 011000
Q ss_pred cCCCC-cCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCcc
Q 003841 128 GGNKG-VSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 197 (792)
Q Consensus 128 g~~~~-~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~gt 197 (792)
.-.++ ...+. .+.++| +. +..-.-+...|.+.+++- ....|-|++|.|+..+-.
T Consensus 148 ~~~~a~q~AD~-----------vvVv~D--as-~tr~~l~p~vl~~l~~ys--~ips~lvmnkid~~k~k~ 202 (379)
T KOG1423|consen 148 NPRDAAQNADC-----------VVVVVD--AS-ATRTPLHPRVLHMLEEYS--KIPSILVMNKIDKLKQKR 202 (379)
T ss_pred CHHHHHhhCCE-----------EEEEEe--cc-CCcCccChHHHHHHHHHh--cCCceeeccchhcchhhh
Confidence 00001 11222 345567 11 224444556677777775 466788999999986543
No 168
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.96 E-value=0.0033 Score=76.81 Aligned_cols=113 Identities=24% Similarity=0.329 Sum_probs=63.9
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
..|.|+|+|..++||||||++|.+..+.....+..|.-.....+... .....|++.||.. +|...+. +
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~---~~~ItfiDTPGhe--~F~~m~~-------r 356 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN---GGKITFLDTPGHE--AFTAMRA-------R 356 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC---CEEEEEEECCCCc--cchhHHH-------h
Confidence 56999999999999999999998876532222333432222222111 1234578889854 3433221 1
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCch--hhHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDL--ANSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl--~~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
.. ..+ |+ -+.+|| +...+ .+.+++..++ ..+.+.|.|+||+|+.+
T Consensus 357 ga----~~a-----------Di-aILVVd-----AddGv~~qT~e~i~~a~---~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 357 GA----QVT-----------DI-VVLVVA-----ADDGVMPQTIEAINHAK---AAGVPIIVAINKIDKPG 403 (787)
T ss_pred hh----hhC-----------CE-EEEEEE-----CCCCCCHhHHHHHHHHH---hcCCcEEEEEECccccc
Confidence 10 011 11 234456 44332 2233444444 45788999999999964
No 169
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.96 E-value=0.0023 Score=64.36 Aligned_cols=54 Identities=28% Similarity=0.309 Sum_probs=37.9
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPG 106 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g 106 (792)
.-+|+|||..|+|||||+|+|+|....+++. ..+||.-..+.+ +....+++.||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~------~~~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL------DKKVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe------CCCEEEEECcC
Confidence 4689999999999999999999987666665 356665333332 12234566666
No 170
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=96.94 E-value=0.0091 Score=58.60 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.1
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
+-+|+|||+.++|||||++.+++..|.+.
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~ 33 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQ 33 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcC
Confidence 45899999999999999999998877443
No 171
>PRK12736 elongation factor Tu; Reviewed
Probab=96.93 E-value=0.0018 Score=73.58 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=20.5
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|+++|...+|||||+++|+|.
T Consensus 14 ni~i~Ghvd~GKSTL~~~L~~~ 35 (394)
T PRK12736 14 NIGTIGHVDHGKTTLTAAITKV 35 (394)
T ss_pred EEEEEccCCCcHHHHHHHHHhh
Confidence 5999999999999999999975
No 172
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.90 E-value=0.01 Score=58.25 Aligned_cols=28 Identities=29% Similarity=0.641 Sum_probs=24.8
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
-.-.+|+|+|.+++|||||+++|.|..+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~ 39 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDI 39 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCC
Confidence 3467899999999999999999999854
No 173
>PLN03126 Elongation factor Tu; Provisional
Probab=96.90 E-value=0.0022 Score=74.48 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.2
Q ss_pred CCeEEEEccCCCchhHHHHHHhCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-.|+++|..++|||||+++|++.
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~ 104 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMA 104 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHh
Confidence 345899999999999999999965
No 174
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=96.89 E-value=0.004 Score=74.05 Aligned_cols=114 Identities=19% Similarity=0.293 Sum_probs=64.9
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
.-|.|+++|..++||||||++|.+..+.....++.|.--....+.... .....|++.||.. +|...+. +
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~--~~~i~~iDTPGhe--~F~~~r~-------r 154 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENED--GKMITFLDTPGHE--AFTSMRA-------R 154 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECC--CcEEEEEECCCCc--chhhHHH-------h
Confidence 459999999999999999999999876443334445432222222111 1133577889853 3433221 1
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCch--hhHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDL--ANSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl--~~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
. .+ ..++ -+.+|| ++... .+.+.++.++ ..+.+.|.|+||+|+.+
T Consensus 155 g------a~---------~aDi-aILVVd-----a~dgv~~qT~e~i~~~~---~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 155 G------AK---------VTDI-VVLVVA-----ADDGVMPQTIEAISHAK---AANVPIIVAINKIDKPE 201 (587)
T ss_pred h------hc---------cCCE-EEEEEE-----CCCCCCHhHHHHHHHHH---HcCCCEEEEEECccccc
Confidence 1 10 1111 233455 43322 2233444443 45788999999999964
No 175
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.88 E-value=0.002 Score=77.59 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.2
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
...||+||..++|||||+++|+...
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~ 48 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDS 48 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHh
Confidence 3479999999999999999999764
No 176
>PRK00049 elongation factor Tu; Reviewed
Probab=96.85 E-value=0.0027 Score=72.09 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
-.|+++|..++|||||+++|++.
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~ 35 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKV 35 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHh
Confidence 35899999999999999999974
No 177
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.81 E-value=0.0035 Score=74.65 Aligned_cols=21 Identities=24% Similarity=0.599 Sum_probs=19.6
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
-|+|||..++|||||+++|+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~ 23 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLK 23 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999984
No 178
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.79 E-value=0.011 Score=59.11 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=22.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.|+|||+.++|||||++++.+..|
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~ 25 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF 25 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC
Confidence 699999999999999999999876
No 179
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=96.78 E-value=0.0084 Score=59.67 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=22.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.|+|||+.++|||||+..+++..|
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f 27 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSF 27 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 699999999999999999998877
No 180
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=96.77 E-value=0.015 Score=57.69 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=23.9
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
-.+|+++|.+++|||||++.|++..+.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~ 41 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV 41 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC
Confidence 358999999999999999999877664
No 181
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=96.77 E-value=0.018 Score=56.94 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=20.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|+++|..+||||||++.|+|.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~ 22 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE 22 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999987
No 182
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=96.77 E-value=0.0044 Score=73.90 Aligned_cols=110 Identities=24% Similarity=0.219 Sum_probs=60.1
Q ss_pred ccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCccccChhHHH--HHHHHHHHHhhcCC
Q 003841 54 GSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIR--REIQAQTDKEAGGN 130 (792)
Q Consensus 54 G~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~--~~i~~~~~~~~g~~ 130 (792)
|.+|+|||||+|+|+|..+ .++. .++|+...+-.+.... .-..+.++||... +.... +.+.. .+...
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~---~~i~lvDtPG~~~--~~~~s~~e~v~~---~~l~~- 70 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQG---EDIEIVDLPGIYS--LTTFSLEEEVAR---DYLLN- 70 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECC---eEEEEEECCCccc--cCccchHHHHHH---HHHhh-
Confidence 8999999999999999875 3333 3456544433333221 1236788998532 21111 11111 11110
Q ss_pred CCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 131 KGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 131 ~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
..+++ -+.++| ++. +. ..+.+..++...+.++|.|+||.|+.+
T Consensus 71 ------------~~aDv-vI~VvD-----at~-le--r~l~l~~ql~~~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 71 ------------EKPDL-VVNVVD-----ASN-LE--RNLYLTLQLLELGIPMILALNLVDEAE 113 (591)
T ss_pred ------------cCCCE-EEEEec-----CCc-ch--hhHHHHHHHHhcCCCEEEEEehhHHHH
Confidence 01122 344556 332 21 224445555556899999999999864
No 183
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=96.75 E-value=0.003 Score=73.37 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.5
Q ss_pred CCCCCeEEEEccCCCchhHHHHHHhCCC
Q 003841 44 TIELPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 44 ~i~lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
.-....|||||..++|||||+++|+...
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~ 51 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDT 51 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhc
Confidence 3567899999999999999999998663
No 184
>PRK12735 elongation factor Tu; Reviewed
Probab=96.74 E-value=0.0027 Score=72.06 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.7
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
-.|+++|..++|||||+++|++.
T Consensus 13 ~~i~iiGhvd~GKSTL~~~L~~~ 35 (396)
T PRK12735 13 VNVGTIGHVDHGKTTLTAAITKV 35 (396)
T ss_pred EEEEEECcCCCCHHHHHHHHHHh
Confidence 35899999999999999999973
No 185
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.72 E-value=0.014 Score=59.77 Aligned_cols=120 Identities=23% Similarity=0.298 Sum_probs=64.6
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC--CCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~--~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
=+|||+|+.|+|||||++++++..| +.+.. +.+-+|......... .--....+.+|. .+++ ..+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~--~~~~~~~Dt~gq-----~~~~----~~~~~ 73 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKTIEPYRR--NIKLQLWDTAGQ-----EEYR----SLRPE 73 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEEEEeCCC--EEEEEeecCCCH-----HHHH----HHHHH
Confidence 4899999999999999999999976 43332 122333322222110 000111222221 1221 12222
Q ss_pred h-hcCCCCcCcCceEEEEecCCcceeEEeecCCCC-CCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCcch
Q 003841 126 E-AGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTP-ANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTD 198 (792)
Q Consensus 126 ~-~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~-a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~ 198 (792)
+ .|. +. -+.++| +.. ...+-....|....+..++.....|-|.+|.|+.+....
T Consensus 74 y~~~~----------------~~-~l~~~d--~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~ 129 (219)
T COG1100 74 YYRGA----------------NG-ILIVYD--STLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSS 129 (219)
T ss_pred HhcCC----------------CE-EEEEEe--cccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhH
Confidence 1 221 11 223333 111 233444556677777777778899999999999876543
No 186
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.72 E-value=0.0052 Score=73.14 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=25.7
Q ss_pred CCCCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 44 TIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 44 ~i~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.+.-|.|+++|..++||||||++|.|..+
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v 31 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAV 31 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCccc
Confidence 35679999999999999999999998743
No 187
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.70 E-value=0.0037 Score=64.96 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=18.6
Q ss_pred EEEEccCCCchhHHHHHHhC
Q 003841 50 VAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~G 69 (792)
|+++|..++|||||+++|+.
T Consensus 2 v~i~Gh~~~GKttL~~~ll~ 21 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLY 21 (219)
T ss_pred EEEecCCCCChHHHHHHHHH
Confidence 79999999999999999963
No 188
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=96.69 E-value=0.0073 Score=59.45 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.7
Q ss_pred EEEEccCCCchhHHHHHHhCCCC
Q 003841 50 VAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~G~~~ 72 (792)
|+|||+.++|||||++.+.+..|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~ 23 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF 23 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC
Confidence 68999999999999999999876
No 189
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=96.69 E-value=0.0051 Score=73.39 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.7
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
--|++||..++|||||+++|+..
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~ 26 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEY 26 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 190
>PTZ00369 Ras-like protein; Provisional
Probab=96.68 E-value=0.015 Score=58.60 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=24.2
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
-..|+|||+.++|||||++.+++..|.
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~ 31 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI 31 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 468999999999999999999988763
No 191
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=96.67 E-value=0.004 Score=74.48 Aligned_cols=22 Identities=32% Similarity=0.592 Sum_probs=20.5
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+++|..++|||||+++|+|.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~ 23 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV 23 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999996
No 192
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=96.67 E-value=0.032 Score=54.93 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=23.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
..|+|+|+.++|||||+..+.+..|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~ 26 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF 26 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999998876
No 193
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=96.66 E-value=0.036 Score=57.18 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=23.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
+|+|||+.++|||||+..+++..|..
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~ 27 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG 27 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 69999999999999999999987754
No 194
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=96.65 E-value=0.0086 Score=70.45 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.8
Q ss_pred CCCeEEEEccCCCchhHHHHHHh
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~ 68 (792)
..-.|++||..++|||||.|+|+
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll 31 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLL 31 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHH
Confidence 45589999999999999999996
No 195
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.58 E-value=0.0036 Score=60.39 Aligned_cols=53 Identities=26% Similarity=0.312 Sum_probs=37.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~ 107 (792)
.++|+|.+|+|||||+|+|.|..++..+. ..+||....+.+. .-..+++.||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLT------PTITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeC------CCEEEEECCCc
Confidence 89999999999999999999998754433 3467764444431 12356677774
No 196
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.57 E-value=0.015 Score=60.92 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=21.8
Q ss_pred CCC-eEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELP-QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lP-qIvVvG~qssGKSSlLeal~G~ 70 (792)
.-| -|+|||..++|||||+++|.+.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~ 62 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 444 4899999999999999999886
No 197
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=96.56 E-value=0.01 Score=61.70 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=23.4
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
..-+|+|||++++|||||++.++...|
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f 38 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF 38 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCC
Confidence 445899999999999999999877666
No 198
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=96.54 E-value=0.016 Score=57.07 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=23.0
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~l 73 (792)
+|+|+|..++|||||++.+.+..|.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~ 26 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 6999999999999999999988763
No 199
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=96.54 E-value=0.012 Score=60.32 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=20.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|+++|..++|||||+++|+|.
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999988
No 200
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=96.48 E-value=0.022 Score=57.44 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=22.8
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~l 73 (792)
+|+|||+.++|||||+..+++..|.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~ 26 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFD 26 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 6899999999999999999988763
No 201
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.48 E-value=0.019 Score=57.99 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=22.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|+|||+.++|||||++.+++..|
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~ 25 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF 25 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999876
No 202
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=96.46 E-value=0.0041 Score=70.88 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.2
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|||||..++|||||+++|+..
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~ 23 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHD 23 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHH
Confidence 5899999999999999999755
No 203
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=96.45 E-value=0.039 Score=54.62 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.8
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
..+|++||.+++|||||+++|++..|.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~ 35 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV 35 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc
Confidence 468999999999999999999876653
No 204
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=96.43 E-value=0.017 Score=55.99 Aligned_cols=24 Identities=33% Similarity=0.733 Sum_probs=22.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.|+|||+.++|||||++.+.+..|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~ 24 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF 24 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc
Confidence 589999999999999999999876
No 205
>PTZ00258 GTP-binding protein; Provisional
Probab=96.43 E-value=0.0048 Score=69.63 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=36.0
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEe
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLL 90 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~ 90 (792)
..-.+|++||.+|+|||||+|+|+|.......-..||+.|..-.+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~ 64 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVN 64 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEe
Confidence 3456899999999999999999999874333346799988765543
No 206
>PRK13351 elongation factor G; Reviewed
Probab=96.39 E-value=0.012 Score=71.66 Aligned_cols=24 Identities=13% Similarity=0.397 Sum_probs=21.5
Q ss_pred CCCeEEEEccCCCchhHHHHHHhC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G 69 (792)
....|+|||..++|||||+++|+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~ 30 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILF 30 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHH
Confidence 356899999999999999999974
No 207
>PRK10218 GTP-binding protein; Provisional
Probab=96.35 E-value=0.0068 Score=72.34 Aligned_cols=24 Identities=21% Similarity=0.547 Sum_probs=21.7
Q ss_pred CCCeEEEEccCCCchhHHHHHHhC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G 69 (792)
.+-.|+|||..++|||||+++|++
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~ 27 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQ 27 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHH
Confidence 356799999999999999999996
No 208
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.34 E-value=0.0082 Score=64.82 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=52.8
Q ss_pred cchHHHHHHHHHHHHHhCCC-----CCCCCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcc
Q 003841 23 GSVIPLVNKLQDIFAQLGSQ-----STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDE 96 (792)
Q Consensus 23 ~~l~~~~nkL~d~~~~~G~~-----~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~ 96 (792)
..+-.+++.|.+.+...... ..-...+|+|||.+|+|||||+|+|+|.....++. ..+||.+..+.+.
T Consensus 89 ~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~------ 162 (276)
T TIGR03596 89 KGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS------ 162 (276)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC------
Confidence 34555666666554321100 01234679999999999999999999987655544 3578876655542
Q ss_pred cceeeccCCCccccC
Q 003841 97 EYGEFLHLPGKRFYD 111 (792)
Q Consensus 97 ~~~~~~~~~g~~~~d 111 (792)
....+++.||..+-.
T Consensus 163 ~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 163 DGLELLDTPGILWPK 177 (276)
T ss_pred CCEEEEECCCcccCC
Confidence 234678889874433
No 209
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.32 E-value=0.04 Score=56.63 Aligned_cols=25 Identities=28% Similarity=0.620 Sum_probs=23.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
|.|+++|..+||||||+..|++..+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~ 25 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY 25 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999998865
No 210
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=96.32 E-value=0.038 Score=58.75 Aligned_cols=24 Identities=25% Similarity=0.672 Sum_probs=22.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|+|||+.++||||||+.+++..|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f 25 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF 25 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 699999999999999999988776
No 211
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.012 Score=59.56 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=22.4
Q ss_pred CCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 44 TIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 44 ~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.+..-.|||+|+||+||+||+...+--
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd 45 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYD 45 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHh
Confidence 455579999999999999999877533
No 212
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=96.30 E-value=0.038 Score=54.54 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=22.0
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|++||..++|||||++++++..|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~ 24 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF 24 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC
Confidence 489999999999999999998865
No 213
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.26 E-value=0.021 Score=57.37 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=22.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|||||+.++|||||+..+++..|
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f 26 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY 26 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 699999999999999999998876
No 214
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.25 E-value=0.015 Score=69.55 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=21.1
Q ss_pred CCeEEEEccCCCchhHHHHHHhCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.--|++||..++|||||+++|+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~ 30 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIEL 30 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 447999999999999999999754
No 215
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.20 E-value=0.017 Score=57.54 Aligned_cols=54 Identities=26% Similarity=0.291 Sum_probs=37.4
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPG 106 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g 106 (792)
.+.|+++|.+|+|||||+++|.+..+..++. ..+|+....+.+. .-..+++.||
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~------~~~~~iDtpG 169 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS------PGIYLLDTPG 169 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec------CCEEEEECCC
Confidence 4689999999999999999999987654433 2466655444432 1134566666
No 216
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.20 E-value=0.0038 Score=62.05 Aligned_cols=60 Identities=23% Similarity=0.331 Sum_probs=34.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccC-------C-CCCcccEEEEEeeccCcccceeeccCCCccccChh
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-------D-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFS 113 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~-------~-~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~ 113 (792)
..+|++|.+++|||||||+|++..-+..+. | .+||..- |...+ .-+..++.||....++.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~---l~~l~---~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRE---LFPLP---DGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEE---EEEET---TSEEEECSHHHHT--GC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCee---EEecC---CCcEEEECCCCCccccc
Confidence 689999999999999999999985444432 2 3444322 22221 23456788886544444
No 217
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=96.17 E-value=0.0073 Score=63.24 Aligned_cols=59 Identities=29% Similarity=0.338 Sum_probs=40.7
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC--CCccccCC--CCCcccEEEEEeeccC---cccceeeccCCCcc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR--DFLPRGND--ICTRRPLVLQLLQTKT---DEEYGEFLHLPGKR 108 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~--~~lPr~~~--~~TR~P~~l~l~~~~~---~~~~~~~~~~~g~~ 108 (792)
+.=.|+|+|.+++|||+|||.|+|. .| +.+.+ .|||- +.+-..+. .+....+++.+|..
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f-~~~~~~~~~T~g---i~~~~~~~~~~~~~~v~~lDteG~~ 71 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGF-DVMDTSQQTTKG---IWMWSVPFKLGKEHAVLLLDTEGTD 71 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCe-EecCCCCCCccc---eEEEeccccCCCcceEEEEecCCcC
Confidence 4457999999999999999999999 65 77765 68883 22222211 12445667777743
No 218
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=96.12 E-value=0.0068 Score=69.46 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
-.|++||..++|||||+++|+..
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~~ 30 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLYK 30 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHHH
Confidence 45899999999999999999853
No 219
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=96.09 E-value=0.015 Score=72.33 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=34.2
Q ss_pred eeEEeecC---------------------CCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCC
Q 003841 149 DITLVDLP---------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 193 (792)
Q Consensus 149 ~LtlVDLP---------------------V~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~ 193 (792)
.++|||+| |+.|...+..+. ..+.+.+...+...|.++||+|+.
T Consensus 99 ~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred EEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHHCCCCEEEEEECCccc
Confidence 56899999 677777776554 445566666788999999999998
No 220
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.07 E-value=0.0077 Score=65.43 Aligned_cols=58 Identities=24% Similarity=0.348 Sum_probs=41.8
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCcccc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFY 110 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~ 110 (792)
-.+|+|||.+|+|||||+|+|+|.....++. ..+||-+..+.+. ....+++.||-.+.
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~------~~~~l~DtPGi~~~ 179 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG------KGLELLDTPGILWP 179 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC------CcEEEEECCCcCCC
Confidence 4589999999999999999999987655544 3577765544432 23457888886443
No 221
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.06 E-value=0.054 Score=57.10 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=23.7
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.-.|||||+.++||||||..+++..|
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F 38 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCY 38 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCC
Confidence 45899999999999999999998876
No 222
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=96.05 E-value=0.041 Score=54.95 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=22.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|+|||+.++|||||+..+++..|
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f 26 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF 26 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 699999999999999999998876
No 223
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=96.04 E-value=0.061 Score=54.77 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.3
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+=.|+|||+.++||||||..+++-.|
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~ 31 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST 31 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35899999999999999999998765
No 224
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=96.02 E-value=0.025 Score=66.60 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=21.1
Q ss_pred CCCeEEEEccCCCchhHHHHHHh
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~ 68 (792)
..-.|+|||..++|||||+|+|+
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll 32 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVL 32 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 56789999999999999999985
No 225
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=96.02 E-value=0.087 Score=51.54 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|+++|.+++|||||++.+....|
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~ 25 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEI 25 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 699999999999999999976555
No 226
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=96.00 E-value=0.07 Score=57.92 Aligned_cols=134 Identities=18% Similarity=0.248 Sum_probs=62.8
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCC-----CcccEEEEEeeccC----cccceeeccCCCccc-c----ChhH
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC-----TRRPLVLQLLQTKT----DEEYGEFLHLPGKRF-Y----DFSE 114 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~-----TR~P~~l~l~~~~~----~~~~~~~~~~~g~~~-~----d~~~ 114 (792)
.|.|||..|+||||+|++|.+....+...... ....+.+.-....- ..-...+++.||++. . .+..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~ 85 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEP 85 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHH
Confidence 58999999999999999999997766542111 11122232221110 011224567888642 1 2344
Q ss_pred HHHHHHHHHHHhhcC-----CCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeec
Q 003841 115 IRREIQAQTDKEAGG-----NKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITK 189 (792)
Q Consensus 115 i~~~i~~~~~~~~g~-----~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK 189 (792)
|.+.|....+.+... ...+.+..|.+ -|-||+ |....+...| ++..|++-. ....|-||.|
T Consensus 86 I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~--------cLYfI~----pt~~~L~~~D-i~~mk~Ls~-~vNvIPvIaK 151 (281)
T PF00735_consen 86 IVDYIESQFDSYLEEESKINRPRIEDTRVHA--------CLYFIP----PTGHGLKPLD-IEFMKRLSK-RVNVIPVIAK 151 (281)
T ss_dssp HHHHHHHHHHHHHHHHTSSS-TTS----EEE--------EEEEE-----TTSSSS-HHH-HHHHHHHTT-TSEEEEEEST
T ss_pred HHHHHHHHHHHHHHHhhcccccCcCCCCcce--------EEEEEc----CCCccchHHH-HHHHHHhcc-cccEEeEEec
Confidence 555555443332211 12333444433 233444 3333344344 344444443 4678999999
Q ss_pred CCCCCCc
Q 003841 190 LDIMDRG 196 (792)
Q Consensus 190 ~D~~~~g 196 (792)
.|.+...
T Consensus 152 aD~lt~~ 158 (281)
T PF00735_consen 152 ADTLTPE 158 (281)
T ss_dssp GGGS-HH
T ss_pred ccccCHH
Confidence 9999743
No 227
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=95.96 E-value=0.0083 Score=64.74 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=31.6
Q ss_pred EEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEE
Q 003841 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQL 89 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l 89 (792)
|++||.+|+|||||+++|+|....+..-..||+.|..-.+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v 40 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIV 40 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeE
Confidence 5799999999999999999997533333678988865443
No 228
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=95.90 E-value=0.097 Score=52.13 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.3
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
..+|++||.+++|||||++.+..-.|
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~ 38 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES 38 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC
Confidence 47899999999999999999964344
No 229
>PRK12288 GTPase RsgA; Reviewed
Probab=95.89 E-value=0.0077 Score=67.20 Aligned_cols=59 Identities=24% Similarity=0.361 Sum_probs=38.8
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccC-------C-CCCcccEEEEEeeccCcccceeeccCCCccccChh
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-------D-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFS 113 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~-------~-~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~ 113 (792)
.+|+||.+|+|||||||+|+|...+..+. | .+||...-+.| + .-+.+++.||....++.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l---~---~~~~liDTPGir~~~l~ 273 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHF---P---HGGDLIDSPGVREFGLW 273 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEe---c---CCCEEEECCCCCcccCC
Confidence 48999999999999999999986554433 1 24544322222 1 11347889997655543
No 230
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.89 E-value=0.027 Score=64.33 Aligned_cols=44 Identities=25% Similarity=0.110 Sum_probs=28.5
Q ss_pred HHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCccc
Q 003841 167 SDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPL 210 (792)
Q Consensus 167 ~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L 210 (792)
+++...|+.+.....-+-.|+||.|-..+|-.+..+..--..|+
T Consensus 226 q~a~~~a~~F~~~~~~~g~IlTKlD~~argG~aLs~~~~t~~PI 269 (429)
T TIGR01425 226 QAAEAQAKAFKDSVDVGSVIITKLDGHAKGGGALSAVAATKSPI 269 (429)
T ss_pred hhHHHHHHHHHhccCCcEEEEECccCCCCccHHhhhHHHHCCCe
Confidence 45566666665545567789999999887766655543333333
No 231
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=95.89 E-value=0.055 Score=56.58 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=22.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.|+|||+.++|||||++.+++..|
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f 25 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF 25 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 589999999999999999999886
No 232
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.87 E-value=0.0086 Score=66.19 Aligned_cols=59 Identities=27% Similarity=0.338 Sum_probs=38.2
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccCh
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDF 112 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~ 112 (792)
.+.|||-+|+|||||||+|+|....- +.++|..+.=.+.-..+....+++.||..+.++
T Consensus 134 ~v~vvG~PNVGKSslIN~L~~k~~~~-----~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLLGKKVAK-----TSNRPGTTKGIQWIKLDDGIYLLDTPGIIPPKF 192 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHhccccee-----eCCCCceecceEEEEcCCCeEEecCCCcCCCCc
Confidence 59999999999999999999997532 223443322111111234457789999765443
No 233
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.87 E-value=0.0057 Score=56.40 Aligned_cols=25 Identities=32% Similarity=0.687 Sum_probs=22.1
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~l 73 (792)
+|+|+|+.++||||||++|++..+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 5999999999999999999999763
No 234
>PLN00223 ADP-ribosylation factor; Provisional
Probab=95.86 E-value=0.1 Score=52.41 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.+|++||.++||||||+..+....|
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~ 42 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEI 42 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC
Confidence 5899999999999999999986555
No 235
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=95.84 E-value=0.084 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=22.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~l 73 (792)
+|+++|+.++||||++..+++..|.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~ 26 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 6899999999999999999877663
No 236
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.83 E-value=0.19 Score=55.02 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.5
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-+.|+|+|.+++||||+++.|.+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999865
No 237
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=95.82 E-value=0.073 Score=55.74 Aligned_cols=24 Identities=25% Similarity=0.614 Sum_probs=22.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.|||||+.++||||||..+++..|
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f 26 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY 26 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 689999999999999999999876
No 238
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=95.79 E-value=0.016 Score=65.01 Aligned_cols=56 Identities=23% Similarity=0.227 Sum_probs=38.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCC----ccccC--CCCCcccEEEEEeeccCcccceeeccCCCccc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDF----LPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF 109 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~----lPr~~--~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~ 109 (792)
-.++|||.+|+|||||+|+|++... .+..+ ..+|+-+.++.+. .-..+++.||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~------~~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD------DGHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC------CCCEEEECCCCCC
Confidence 5899999999999999999998632 12322 3467766655541 1235788998653
No 239
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=95.78 E-value=0.011 Score=62.90 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=41.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccC-----C---CCCcccEEEEEeeccCcccceeeccCCCccccChhHH
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-----D---ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEI 115 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~-----~---~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i 115 (792)
..++|+|.+|+|||||||+|.|...+..+. + .+||....+.+ . -+.+++.||....++.++
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~------~~~liDtPG~~~~~l~~~ 189 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-H------GGLIADTPGFNEFGLWHL 189 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-C------CcEEEeCCCccccCCCCC
Confidence 589999999999999999999975443332 1 25665554554 1 135788898765544433
No 240
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=95.75 E-value=0.075 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=22.2
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+|+|+|+.++|||||+..+++..|
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f 26 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAF 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 699999999999999999998766
No 241
>PTZ00416 elongation factor 2; Provisional
Probab=95.74 E-value=0.022 Score=70.72 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=33.8
Q ss_pred eeEEeecC---------------------CCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCC
Q 003841 149 DITLVDLP---------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 193 (792)
Q Consensus 149 ~LtlVDLP---------------------V~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~ 193 (792)
.+.|||+| |+.+..++..+. ..+.+.+...+...|.|+||+|+.
T Consensus 93 ~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 93 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHcCCCEEEEEEChhhh
Confidence 47889999 566777776554 455666666778999999999997
No 242
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=95.73 E-value=0.015 Score=67.23 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.3
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
.|+++|.-.+|||||+++|+-
T Consensus 9 nv~i~Ghvd~GKSTL~~~Ll~ 29 (446)
T PTZ00141 9 NLVVIGHVDSGKSTTTGHLIY 29 (446)
T ss_pred EEEEEecCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 243
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=95.69 E-value=0.092 Score=53.05 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=23.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.+|+|||+.++|||||+..+++..|
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f 30 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF 30 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC
Confidence 3799999999999999999998876
No 244
>PRK12289 GTPase RsgA; Reviewed
Probab=95.67 E-value=0.013 Score=65.50 Aligned_cols=58 Identities=28% Similarity=0.327 Sum_probs=39.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccC--C------CCCcccEEEEEeeccCcccceeeccCCCccccCh
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN--D------ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDF 112 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~--~------~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~ 112 (792)
.+||||.+|+|||||||+|+|...+.++. + .+||....+.+ + ..+.+++.||....++
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l---~---~g~~liDTPG~~~~~l 239 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL---P---NGGLLADTPGFNQPDL 239 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC---C---CCcEEEeCCCcccccc
Confidence 58999999999999999999886555443 1 25665433333 1 1236788998654443
No 245
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=95.65 E-value=0.14 Score=51.39 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=22.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
-+|++||++++|||||++.+....|
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~ 42 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEV 42 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Confidence 5899999999999999999975555
No 246
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.64 E-value=0.034 Score=67.52 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.6
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|++||.+++||||++--|.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhh
Confidence 5789999999999999999987
No 247
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=95.47 E-value=0.029 Score=64.08 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
=.|+|+|.-.+|||||+++|+|.
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCe
Confidence 35899999999999999999875
No 248
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=95.45 E-value=0.064 Score=65.67 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=21.9
Q ss_pred CCCeEEEEccCCCchhHHHHHHhC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G 69 (792)
.+-.|+|||..++|||||+++|+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~ 41 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLA 41 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHH
Confidence 568999999999999999999974
No 249
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=95.42 E-value=0.017 Score=65.94 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=20.6
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|+++|..++|||||+++|+|.
T Consensus 6 ~i~iiG~~~~GKSTL~~~Lt~~ 27 (406)
T TIGR03680 6 NIGMVGHVDHGKTTLTKALTGV 27 (406)
T ss_pred EEEEEccCCCCHHHHHHHHhCe
Confidence 6899999999999999999875
No 250
>PRK09602 translation-associated GTPase; Reviewed
Probab=95.32 E-value=0.016 Score=65.81 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=31.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEE
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~ 86 (792)
.+|++||.+|+|||||+++|++..+....-..||+.|..
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 479999999999999999999997633333568888865
No 251
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.30 E-value=0.14 Score=56.96 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.6
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-..|.|.|.++|||||++++|...
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998765
No 252
>PRK07560 elongation factor EF-2; Reviewed
Probab=95.29 E-value=0.054 Score=66.40 Aligned_cols=26 Identities=12% Similarity=0.390 Sum_probs=22.7
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
-..--|+|||...+|||||+++|+..
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~ 43 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAG 43 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHH
Confidence 35678999999999999999999744
No 253
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.27 E-value=0.057 Score=62.00 Aligned_cols=113 Identities=27% Similarity=0.433 Sum_probs=63.6
Q ss_pred CCCCCCeEE-EEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHH
Q 003841 43 STIELPQVA-VVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQA 121 (792)
Q Consensus 43 ~~i~lPqIv-VvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 121 (792)
.+.+.|-|| |||.++.|||+|+.+|+.+ | -...----|-|+-+.--.. ....|+.+|. ++..-|..
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr-~-tk~ti~~i~GPiTvvsgK~----RRiTflEcp~-------Dl~~miDv 130 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRR-F-TKQTIDEIRGPITVVSGKT----RRITFLECPS-------DLHQMIDV 130 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHH-H-HHhhhhccCCceEEeecce----eEEEEEeChH-------HHHHHHhH
Confidence 356778877 9999999999999999876 2 1221111123432221110 1122333331 22222211
Q ss_pred HHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCc
Q 003841 122 QTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LANSDALQIAGIADPDGYRTIGIITKLDIMDRG 196 (792)
Q Consensus 122 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~~~~al~la~~vDp~g~RTIGVlTK~D~~~~g 196 (792)
+ + |++ +.|.||| +|-. +++.+.|.++.. ..--|++||+|..|+....
T Consensus 131 a--K-------IaD------------LVlLlId-----gnfGfEMETmEFLnil~~--HGmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 131 A--K-------IAD------------LVLLLID-----GNFGFEMETMEFLNILIS--HGMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred H--H-------hhh------------eeEEEec-----cccCceehHHHHHHHHhh--cCCCceEEEEeecccccCh
Confidence 0 1 211 2567788 6654 456677776654 2346999999999998643
No 254
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.24 E-value=0.081 Score=59.79 Aligned_cols=56 Identities=11% Similarity=-0.011 Sum_probs=34.8
Q ss_pred HHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCcccccCeeEEecCChhhh
Q 003841 167 SDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 225 (792)
Q Consensus 167 ~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L~lGy~~V~nrsq~di 225 (792)
.++...++.+..-+- +=.|+||.|-..++-.+.+++..-. +.+.|++.=-+=++||
T Consensus 365 ~d~~~i~~~F~~~~i-dglI~TKLDET~k~G~iLni~~~~~--lPIsyit~GQ~VPeDI 420 (436)
T PRK11889 365 KDMIEIITNFKDIHI-DGIVFTKFDETASSGELLKIPAVSS--APIVLMTDGQDVKKNI 420 (436)
T ss_pred HHHHHHHHHhcCCCC-CEEEEEcccCCCCccHHHHHHHHHC--cCEEEEeCCCCCCcch
Confidence 455666766665433 3457899999988777766655433 4445766544555555
No 255
>PRK12740 elongation factor G; Reviewed
Probab=95.20 E-value=0.051 Score=66.00 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.6
Q ss_pred EccCCCchhHHHHHHhCC
Q 003841 53 VGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 53 vG~qssGKSSlLeal~G~ 70 (792)
||..++|||||+|+|+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~ 18 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFY 18 (668)
T ss_pred CCCCCCcHHHHHHHHHHh
Confidence 689999999999999543
No 256
>PRK00098 GTPase RsgA; Reviewed
Probab=95.19 E-value=0.041 Score=60.13 Aligned_cols=55 Identities=25% Similarity=0.290 Sum_probs=36.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccC-------C-CCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-------D-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~-------~-~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
-.++++|.+|+|||||||+|+|...+-.+. | ..||.+..+.+. ..+.+++.||..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~------~~~~~~DtpG~~ 227 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP------GGGLLIDTPGFS 227 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC------CCcEEEECCCcC
Confidence 379999999999999999999985432222 1 245543322221 224677888865
No 257
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=95.14 E-value=0.065 Score=63.54 Aligned_cols=118 Identities=24% Similarity=0.251 Sum_probs=65.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCc-cccChhHHHHHHHHHHHH
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGK-RFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~-~~~d~~~i~~~i~~~~~~ 125 (792)
.+|++||.+|+||||++|+|+|-. .-+|. .++|=-=-+-.+... ..--+++++||- ....++ ..+.+.. +.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~---~~~i~ivDLPG~YSL~~~S-~DE~Var--~~ 76 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYK---GHEIEIVDLPGTYSLTAYS-EDEKVAR--DF 76 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEec---CceEEEEeCCCcCCCCCCC-chHHHHH--HH
Confidence 469999999999999999999996 46666 233311111122221 112467899984 222221 1112211 12
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
+.. ..||+ -+.+|| |.+ ++ ..|.+.-+.=.-|..+|.++|+.|...+
T Consensus 77 ll~--------------~~~D~-ivnVvD-----Atn-Le--RnLyltlQLlE~g~p~ilaLNm~D~A~~ 123 (653)
T COG0370 77 LLE--------------GKPDL-IVNVVD-----ATN-LE--RNLYLTLQLLELGIPMILALNMIDEAKK 123 (653)
T ss_pred Hhc--------------CCCCE-EEEEcc-----cch-HH--HHHHHHHHHHHcCCCeEEEeccHhhHHh
Confidence 221 12333 355667 322 11 1234444444568889999999998754
No 258
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=94.99 E-value=0.02 Score=63.26 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=29.6
Q ss_pred EEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEE
Q 003841 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~ 86 (792)
|++||..|+|||||+++|++..+..-.-..||+.|..
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~ 37 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNV 37 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCcccccee
Confidence 6899999999999999999997532233458888865
No 259
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=94.95 E-value=0.033 Score=62.41 Aligned_cols=38 Identities=32% Similarity=0.480 Sum_probs=31.3
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEE
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLV 86 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~ 86 (792)
.+|++||.+|+|||||+++|+|... ..+. ..||+.|..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~nypftTi~p~~ 41 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNV 41 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-eecccccccccceE
Confidence 5899999999999999999999973 3433 578887754
No 260
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=94.92 E-value=0.033 Score=60.61 Aligned_cols=36 Identities=33% Similarity=0.428 Sum_probs=27.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCccc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRP 84 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P 84 (792)
-|+|+||-+|+||||||++|+|.+. -.++ .-+|.-|
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~ 100 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEP 100 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCc-cccccCceeccc
Confidence 4999999999999999999999963 3333 3444443
No 261
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.91 E-value=0.06 Score=60.59 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|++||.+++|||+++-.|.+.
T Consensus 139 ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999876
No 262
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.90 E-value=0.081 Score=61.79 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
--|+|||..|+|||+++..|.+.
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 263
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.89 E-value=0.083 Score=61.37 Aligned_cols=121 Identities=19% Similarity=0.199 Sum_probs=62.7
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHhh
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~ 127 (792)
=+||+||+.++|||||+-+|++-.|.+- +.-|.|-.+.=....+.......++.. ....+-..++++|+.
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~~---VP~rl~~i~IPadvtPe~vpt~ivD~s-s~~~~~~~l~~Eirk------ 79 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVDA---VPRRLPRILIPADVTPENVPTSIVDTS-SDSDDRLCLRKEIRK------ 79 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhcccc---ccccCCccccCCccCcCcCceEEEecc-cccchhHHHHHHHhh------
Confidence 4899999999999999999999987322 223333211100000000000111110 011111234455432
Q ss_pred cCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhC--CCCCeEEEEeecCCCCCCcc
Q 003841 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIAD--PDGYRTIGIITKLDIMDRGT 197 (792)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vD--p~g~RTIGVlTK~D~~~~gt 197 (792)
.++|++... || -+.+.|--..-||-+.|+.- +.....|.|-+|.|..+..+
T Consensus 80 -------A~vi~lvya---------vd---~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~ 132 (625)
T KOG1707|consen 80 -------ADVICLVYA---------VD---DESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN 132 (625)
T ss_pred -------cCEEEEEEe---------cC---ChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc
Confidence 123333211 33 12344555566888777643 34567899999999987533
No 264
>PRK13796 GTPase YqeH; Provisional
Probab=94.83 E-value=0.021 Score=64.15 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=36.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC----Cccc-cC-CCCCcccEEEEEeeccCcccceeeccCCCc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD----FLPR-GN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~----~lPr-~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~ 107 (792)
-.++|||.+|+|||||||+|.+.. -.+. +. ..+||..+.+.+.. ...+++.||.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~------~~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD------GSFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC------CcEEEECCCc
Confidence 379999999999999999998542 1222 21 24677766665522 2357788885
No 265
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.82 E-value=0.1 Score=59.70 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=21.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
-.|++||..++||||+|.-|.|.
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999886
No 266
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=94.75 E-value=0.026 Score=64.50 Aligned_cols=62 Identities=31% Similarity=0.330 Sum_probs=42.4
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCccccChhH
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSE 114 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~ 114 (792)
.=.|-+||=+|+||||+||+|+|.+..-+++ -+-|+ ++|.+.. .+-.++.++||-.|-.|.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTK---HFQTi~l---s~~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTK---HFQTIFL---SPSVCLCDCPGLVFPSFSP 376 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcc---eeEEEEc---CCCceecCCCCccccCCCc
Confidence 3467889999999999999999998765544 13343 2333333 2344677888877666654
No 267
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=94.67 E-value=0.033 Score=60.57 Aligned_cols=56 Identities=27% Similarity=0.329 Sum_probs=37.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccC-------C-CCCcccEEEEEeeccCcccceeeccCCCccc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-------D-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF 109 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~-------~-~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~ 109 (792)
..++++|.+|+|||||+|+|+|......+. | .+|+....+.+. .-+.+++.||...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~------~~~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP------GGGLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC------CCCEEEECCCCCc
Confidence 579999999999999999999986533332 1 245543333332 1235778888743
No 268
>PLN00043 elongation factor 1-alpha; Provisional
Probab=94.66 E-value=0.036 Score=64.03 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.1
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
-|++||.-.+|||||+++|+-
T Consensus 9 ni~i~Ghvd~GKSTL~g~Ll~ 29 (447)
T PLN00043 9 NIVVIGHVDSGKSTTTGHLIY 29 (447)
T ss_pred EEEEEecCCCCHHHHHHHHHH
Confidence 489999999999999999973
No 269
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=94.63 E-value=0.23 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=22.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.|+|+|+.++|||||+..++.-.|
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f 26 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF 26 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 689999999999999999998776
No 270
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.62 E-value=0.24 Score=53.51 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=22.7
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
+.+.|+++|.+++|||+++..|++.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 3479999999999999999999876
No 271
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=94.59 E-value=0.21 Score=56.65 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 30 NKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 30 nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
|-.+|+....|.. --|.|||+-++||||+++++++.
T Consensus 5 ~iykDIa~RT~G~-----IyIGvvGpvrtGKSTfIn~fm~q 40 (492)
T TIGR02836 5 DIYKDIAERTQGD-----IYIGVVGPVRTGKSTFIKKFMEL 40 (492)
T ss_pred hHHHHHHHHhCCc-----EEEEEEcCCCCChHHHHHHHHhh
Confidence 3455666667643 25899999999999999999998
No 272
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.58 E-value=0.024 Score=59.30 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=30.0
Q ss_pred ceeEEeecCCCCCCCchhhHH-HHHHHhhhCCCCCeEEEEeec
Q 003841 148 LDITLVDLPVTPANSDLANSD-ALQIAGIADPDGYRTIGIITK 189 (792)
Q Consensus 148 ~~LtlVDLPV~~a~~Dl~~~~-al~la~~vDp~g~RTIGVlTK 189 (792)
|.+.|-|=|. +|-|..+.+ .+.+.++...+...||.++|.
T Consensus 161 P~iilADEPT--gnLD~~t~~~V~~ll~~~~~~~g~tii~VTH 201 (226)
T COG1136 161 PKIILADEPT--GNLDSKTAKEVLELLRELNKERGKTIIMVTH 201 (226)
T ss_pred CCeEEeeCcc--ccCChHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 6788889774 566777665 477888887666788888886
No 273
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.46 E-value=0.17 Score=58.19 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=20.3
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|||..++|||+++-.|.+.
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~ 244 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAAR 244 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999876
No 274
>COG1162 Predicted GTPases [General function prediction only]
Probab=94.40 E-value=0.047 Score=59.28 Aligned_cols=59 Identities=22% Similarity=0.310 Sum_probs=37.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccC-------C-CCCcccEEEEEeeccCcccceeeccCCCccccCh
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-------D-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDF 112 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~-------~-~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~ 112 (792)
-..|++|.+++|||||||+|.+..-+-++. | .+||- .+|.+.+ .-+..++.||....++
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~---~~l~~l~---~gG~iiDTPGf~~~~l 231 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTH---VELFPLP---GGGWIIDTPGFRSLGL 231 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccce---EEEEEcC---CCCEEEeCCCCCccCc
Confidence 368999999999999999999852222221 1 33432 3444432 1235678888766655
No 275
>COG2229 Predicted GTPase [General function prediction only]
Probab=94.31 E-value=0.27 Score=49.62 Aligned_cols=129 Identities=20% Similarity=0.263 Sum_probs=70.8
Q ss_pred CCCCCeEEEEccCCCchhHHHHHHhCCCCccccCC------CCCcccEEEEEeeccCcccc---eeeccCCCccccChhH
Q 003841 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND------ICTRRPLVLQLLQTKTDEEY---GEFLHLPGKRFYDFSE 114 (792)
Q Consensus 44 ~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~------~~TR~P~~l~l~~~~~~~~~---~~~~~~~g~~~~d~~~ 114 (792)
......|||+|.+++||++++++|+-.. ++...+ .-+.+|+-+-+....-...| ..++..||....+|
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~-~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~f-- 83 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKP-LVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKF-- 83 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccc-cceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHH--
Confidence 3567899999999999999999999875 333321 12244555555433221222 23456777543322
Q ss_pred HHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCC-CeEEEEeecCCCC
Q 003841 115 IRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDG-YRTIGIITKLDIM 193 (792)
Q Consensus 115 i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g-~RTIGVlTK~D~~ 193 (792)
. |+.+.... +--+.||| ++.+..- .+..+..-..-.. .+.+..+||.|+-
T Consensus 84 ---m----~~~l~~ga----------------~gaivlVD-----ss~~~~~-~a~~ii~f~~~~~~ip~vVa~NK~DL~ 134 (187)
T COG2229 84 ---M----WEILSRGA----------------VGAIVLVD-----SSRPITF-HAEEIIDFLTSRNPIPVVVAINKQDLF 134 (187)
T ss_pred ---H----HHHHhCCc----------------ceEEEEEe-----cCCCcch-HHHHHHHHHhhccCCCEEEEeeccccC
Confidence 1 11111111 12456788 3333322 3334333333333 7888889999998
Q ss_pred CCcc--hHHHHHh
Q 003841 194 DRGT--DARNLLL 204 (792)
Q Consensus 194 ~~gt--~~~~il~ 204 (792)
+.-. ..+++|.
T Consensus 135 ~a~ppe~i~e~l~ 147 (187)
T COG2229 135 DALPPEKIREALK 147 (187)
T ss_pred CCCCHHHHHHHHH
Confidence 7532 3445543
No 276
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=94.28 E-value=0.046 Score=62.74 Aligned_cols=35 Identities=46% Similarity=0.673 Sum_probs=29.9
Q ss_pred HhCCC-CCCCCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 38 QLGSQ-STIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 38 ~~G~~-~~i~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.+|.. +.++.--|+|.|+||||||+|||.|.|-.|
T Consensus 27 ~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 27 CVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred HhcccccCcceeEEEEecCcccchHHHHHHHhccCh
Confidence 34544 567888999999999999999999999976
No 277
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.17 E-value=0.11 Score=57.37 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
--|++||.+++||||++-.|.+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 36789999999999999999987
No 278
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=94.15 E-value=0.28 Score=50.50 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=17.9
Q ss_pred EccCCCchhHHHHHHhCCCC
Q 003841 53 VGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 53 vG~qssGKSSlLeal~G~~~ 72 (792)
||+.++|||||++.+++-.|
T Consensus 1 vG~~~vGKTsLi~r~~~~~f 20 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF 20 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC
Confidence 69999999999999997655
No 279
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.11 E-value=0.16 Score=59.12 Aligned_cols=54 Identities=26% Similarity=0.222 Sum_probs=33.9
Q ss_pred HHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCcccccCeeEEecCChhhh
Q 003841 169 ALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 225 (792)
Q Consensus 169 al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L~lGy~~V~nrsq~di 225 (792)
..+.++.+...+ .+=.|+||+|-...+-.+.+++.... +.+-|+++=-+-++||
T Consensus 381 l~~i~~~f~~~~-~~g~IlTKlDet~~~G~~l~i~~~~~--lPI~yvt~GQ~VPeDL 434 (484)
T PRK06995 381 LNEVVQAYRGPG-LAGCILTKLDEAASLGGALDVVIRYK--LPLHYVSNGQRVPEDL 434 (484)
T ss_pred HHHHHHHhccCC-CCEEEEeCCCCcccchHHHHHHHHHC--CCeEEEecCCCChhhh
Confidence 344666666544 45668999998887767776665443 3445776644444555
No 280
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=0.15 Score=56.42 Aligned_cols=29 Identities=31% Similarity=0.626 Sum_probs=26.7
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
..-|-|.++|.=|.||||.|+-|++.++ |
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dy-p 84 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDY-P 84 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCC-C
Confidence 4679999999999999999999999986 6
No 281
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.00 E-value=0.27 Score=55.37 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-|+++|.+++|||+++..|...
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999854
No 282
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.67 E-value=0.18 Score=58.09 Aligned_cols=49 Identities=24% Similarity=0.161 Sum_probs=32.1
Q ss_pred HHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCcccccCeeEE
Q 003841 167 SDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 217 (792)
Q Consensus 167 ~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L~lGy~~V 217 (792)
++++..|+.+...-.-+-.|+||.|--.+|-.+.++..--..|+ -|+++
T Consensus 219 q~av~~a~~F~~~l~i~gvIlTKlD~~a~~G~~ls~~~~~~~Pi--~fig~ 267 (437)
T PRK00771 219 QQAKNQAKAFHEAVGIGGIIITKLDGTAKGGGALSAVAETGAPI--KFIGT 267 (437)
T ss_pred HHHHHHHHHHHhcCCCCEEEEecccCCCcccHHHHHHHHHCcCE--EEEec
Confidence 57778888877654455678999999877766666544333333 35554
No 283
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.52 E-value=0.32 Score=55.21 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-|++||.+++||||++-.|...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~ 197 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999988754
No 284
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.46 E-value=0.068 Score=51.54 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=25.3
Q ss_pred EEEEccCCCchhHHHHHHhCCCCccc----cCCCCCccc
Q 003841 50 VAVVGSQSSGKSSVLEALVGRDFLPR----GNDICTRRP 84 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~G~~~lPr----~~~~~TR~P 84 (792)
|+++|.++||||||++.|.+. +|. --..+||.|
T Consensus 2 i~i~GpsGsGKstl~~~L~~~--~~~~~~~~v~~tTr~p 38 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE--FDPNFGFSVSHTTRKP 38 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc--CCccceecccccccCC
Confidence 789999999999999999976 232 223467765
No 285
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.45 E-value=0.057 Score=54.58 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=25.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~ 77 (792)
-+++|+|.++||||+|||-|.|... |.+.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~-P~~G 54 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET-PASG 54 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC-CCCc
Confidence 3789999999999999999999974 7655
No 286
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.44 E-value=0.07 Score=44.58 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=18.8
Q ss_pred eEEEEccCCCchhHHHHHHh
Q 003841 49 QVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~ 68 (792)
-.+|+|+.+|||||+|+||.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
No 287
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.43 E-value=0.056 Score=54.09 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=27.3
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~T 81 (792)
---+.+||.++||||+||.+|+|+ ++-..|++|
T Consensus 32 GeVLgiVGESGSGKtTLL~~is~r--l~p~~G~v~ 64 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISGR--LTPDAGTVT 64 (258)
T ss_pred CcEEEEEecCCCcHHhHHHHHhcc--cCCCCCeEE
Confidence 347899999999999999999999 466666544
No 288
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.40 E-value=0.06 Score=51.04 Aligned_cols=23 Identities=52% Similarity=0.697 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++|+|..+||||+||++|+|.-
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999999994
No 289
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=93.33 E-value=0.2 Score=48.85 Aligned_cols=46 Identities=28% Similarity=0.335 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 24 ~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
.+-.+.+.|.+.+.. .-...++++||.+++||||++++|.+.....
T Consensus 83 gi~~L~~~l~~~~~~-----~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~ 128 (156)
T cd01859 83 GTKILRRTIKELAKI-----DGKEGKVGVVGYPNVGKSSIINALKGRHSAS 128 (156)
T ss_pred cHHHHHHHHHHHHhh-----cCCCcEEEEECCCCCCHHHHHHHHhCCCccc
Confidence 445566666655432 1234678999999999999999999875433
No 290
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=93.30 E-value=0.11 Score=56.44 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=36.7
Q ss_pred CCCCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccE
Q 003841 43 STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPL 85 (792)
Q Consensus 43 ~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~ 85 (792)
...+-|.|+|||=.|+||||||++|++-...|++.=..|-.|+
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT 216 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPT 216 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccch
Confidence 3578999999999999999999999999888988855555443
No 291
>PRK14974 cell division protein FtsY; Provisional
Probab=93.25 E-value=0.22 Score=55.45 Aligned_cols=48 Identities=23% Similarity=0.164 Sum_probs=30.0
Q ss_pred HHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCcccccCeeE
Q 003841 167 SDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVG 216 (792)
Q Consensus 167 ~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L~lGy~~ 216 (792)
++++..|+.+...-.-+-.|+||.|...++-.+.++... ..+.+-|++
T Consensus 266 ~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G~~ls~~~~--~~~Pi~~i~ 313 (336)
T PRK14974 266 NDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYV--IGKPILFLG 313 (336)
T ss_pred hhHHHHHHHHHhcCCCCEEEEeeecCCCCccHHHHHHHH--HCcCEEEEe
Confidence 466666666654333466789999998887666655443 234444655
No 292
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=93.23 E-value=0.54 Score=51.85 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=26.4
Q ss_pred EEEEccCCCchhHHHHHHhCCCCccccC--CCCCcccE
Q 003841 50 VAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPL 85 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~G~~~lPr~~--~~~TR~P~ 85 (792)
|-+||=+|+||||||++++.-+ |+-. --+|..|.
T Consensus 162 VGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~Pn 197 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPN 197 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcC--CcccCCccccccCc
Confidence 4578999999999999999875 5544 35677774
No 293
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.09 E-value=0.21 Score=56.91 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.8
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|..++||||++..|...
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999864
No 294
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.07 E-value=0.084 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.5
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|..+||||||++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999986
No 295
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=93.04 E-value=0.31 Score=48.26 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
+++|||++-+||||||.-++.-+|
T Consensus 10 rlivigdstvgkssll~~ft~gkf 33 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKF 33 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCcc
Confidence 789999999999999999987765
No 296
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.92 E-value=0.079 Score=54.43 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.4
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|++||.+++||+|.+=-|.-+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~ 24 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAAR 24 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHH
Confidence 3789999999999999888765
No 297
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.90 E-value=0.077 Score=54.95 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=21.7
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
--|+|||..+||||+|+++|+|.-
T Consensus 33 ~FvtViGsNGAGKSTlln~iaG~l 56 (263)
T COG1101 33 DFVTVIGSNGAGKSTLLNAIAGDL 56 (263)
T ss_pred ceEEEEcCCCccHHHHHHHhhCcc
Confidence 358899999999999999999993
No 298
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.62 E-value=0.085 Score=54.14 Aligned_cols=29 Identities=34% Similarity=0.367 Sum_probs=24.0
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
.++++|..+|||||||+.|+|.. +..+|.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~ 57 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL--GPTSGE 57 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCce
Confidence 57899999999999999999983 444443
No 299
>PRK10867 signal recognition particle protein; Provisional
Probab=92.61 E-value=0.33 Score=55.82 Aligned_cols=50 Identities=28% Similarity=0.244 Sum_probs=30.8
Q ss_pred hHHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCcccccCeeEE
Q 003841 166 NSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 217 (792)
Q Consensus 166 ~~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L~lGy~~V 217 (792)
.+++...|+.+...-.-+=.|+||+|-..+|-.+.++..--..|++ |+++
T Consensus 226 gq~av~~a~~F~~~~~i~giIlTKlD~~~rgG~alsi~~~~~~PI~--fig~ 275 (433)
T PRK10867 226 GQDAVNTAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIK--FIGT 275 (433)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEeCccCcccccHHHHHHHHHCcCEE--EEeC
Confidence 4677788887775444566788999976666555554433223333 5554
No 300
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=92.59 E-value=0.099 Score=51.36 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=22.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
+|+|||+.++|||||+..+++..|.+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~ 27 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQ 27 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC
Confidence 69999999999999999887766633
No 301
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.56 E-value=0.086 Score=53.29 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999984
No 302
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=92.53 E-value=0.23 Score=57.61 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.|+++|--..|||||+.||+|..
T Consensus 36 ~ig~~GHVDhGKTtLv~aLtg~~ 58 (460)
T PTZ00327 36 NIGTIGHVAHGKSTVVKALSGVK 58 (460)
T ss_pred EEEEEccCCCCHHHHHHHHhCCC
Confidence 58999999999999999999884
No 303
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.50 E-value=0.085 Score=54.42 Aligned_cols=28 Identities=43% Similarity=0.558 Sum_probs=23.8
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+|||||||.+|+|.- +-.+|
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G 59 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD--RPTSG 59 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc--CCCce
Confidence 78999999999999999999983 44444
No 304
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=92.49 E-value=0.25 Score=53.80 Aligned_cols=37 Identities=35% Similarity=0.548 Sum_probs=27.1
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccC--CCCCcccE
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPL 85 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~--~~~TR~P~ 85 (792)
.+.|-.||=+|+||||||+||+.-+ |+-. .-+|=.|-
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~ 234 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPH 234 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC--Ccccccceeeeccc
Confidence 4667789999999999999999775 4432 34555553
No 305
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.46 E-value=0.085 Score=55.21 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999983
No 306
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.44 E-value=0.098 Score=50.79 Aligned_cols=23 Identities=39% Similarity=0.768 Sum_probs=20.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
|.|.|||..+||||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999866
No 307
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.39 E-value=0.091 Score=53.97 Aligned_cols=28 Identities=18% Similarity=0.443 Sum_probs=23.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+|||||||+.|+|.- +..+|
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G 54 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT--PPSSG 54 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC--CCCcc
Confidence 89999999999999999999983 44444
No 308
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.39 E-value=0.11 Score=53.10 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=27.1
Q ss_pred eEEEEccCCCchhHHHHHHhCCC-CccccCCCCCccc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD-FLPRGNDICTRRP 84 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~-~lPr~~~~~TR~P 84 (792)
-|+|+|.++||||+|+..|.+.- .+...-...||.|
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p 43 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP 43 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC
Confidence 58999999999999999999872 1233334567765
No 309
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.34 E-value=0.095 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+||||+||+.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999984
No 310
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.30 E-value=0.75 Score=44.99 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=19.3
Q ss_pred EEEEccCCCchhHHHHHHhCC
Q 003841 50 VAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~G~ 70 (792)
|.|+|..++|||+++..|...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999765
No 311
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.29 E-value=0.097 Score=54.10 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=23.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-++++|..+||||+||+.|+|.. +-.+|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G 57 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL--RPTSG 57 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58899999999999999999983 33444
No 312
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.19 E-value=0.1 Score=54.42 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999984
No 313
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=92.19 E-value=0.1 Score=54.55 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|+.++||||+|.+|+|.-
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999994
No 314
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.19 E-value=0.1 Score=50.73 Aligned_cols=29 Identities=28% Similarity=0.550 Sum_probs=23.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
.++|+|..++|||+|++.|+|.. +-.+|.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~--~~~~G~ 56 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL--EPDEGI 56 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC--CCCceE
Confidence 45799999999999999999983 444543
No 315
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.14 E-value=0.1 Score=53.64 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=21.0
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||..|+|.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999983
No 316
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.14 E-value=0.1 Score=53.80 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=23.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+|||||||+.|+|.- |-.+|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G 60 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL--EPDAG 60 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--CCCCc
Confidence 57899999999999999999983 33444
No 317
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.08 E-value=0.11 Score=53.52 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||..|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999984
No 318
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.04 E-value=0.13 Score=54.50 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=24.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCcccc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~ 76 (792)
=-+++||.+++||||||+.|.|... |.+
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~-p~~ 57 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEK-PTS 57 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCC
Confidence 3689999999999999999999964 443
No 319
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=92.01 E-value=0.071 Score=59.85 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=38.0
Q ss_pred CcCcCceEEEEecCCcceeEEeecC---------------------CCCCCCc-------hhhH--HHHHHHhhhCCCCC
Q 003841 132 GVSDKQIRLKIFSPHVLDITLVDLP---------------------VTPANSD-------LANS--DALQIAGIADPDGY 181 (792)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~LtlVDLP---------------------V~~a~~D-------l~~~--~al~la~~vDp~g~ 181 (792)
+++-+.-......+ -+.+|+||.| |++|+.+ ...| +-+-+|+..- =.
T Consensus 70 GvTi~~~~~~fet~-k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~ 146 (428)
T COG5256 70 GVTIDVAHSKFETD-KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IK 146 (428)
T ss_pred ceEEEEEEEEeecC-CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--Cc
Confidence 34433333343343 3489999999 6666665 4443 3355666643 45
Q ss_pred eEEEEeecCCCCC
Q 003841 182 RTIGIITKLDIMD 194 (792)
Q Consensus 182 RTIGVlTK~D~~~ 194 (792)
..|.++||.|.++
T Consensus 147 ~lIVavNKMD~v~ 159 (428)
T COG5256 147 QLIVAVNKMDLVS 159 (428)
T ss_pred eEEEEEEcccccc
Confidence 7788899999997
No 320
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.98 E-value=0.11 Score=52.14 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=24.7
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
-.++++|..++||||||+.|+|.. +-.+|.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~ 56 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR--PPASGE 56 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CCCCce
Confidence 378999999999999999999994 334443
No 321
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.96 E-value=0.11 Score=53.65 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=22.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..+|||||||+.|+|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999983
No 322
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.90 E-value=0.11 Score=52.73 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=23.8
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+||||+|++.|+|.. +-.+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 55 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM--QPSSG 55 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 78999999999999999999984 33444
No 323
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.89 E-value=0.11 Score=53.11 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..+|||||||+.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999984
No 324
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=91.89 E-value=0.086 Score=64.57 Aligned_cols=24 Identities=50% Similarity=0.692 Sum_probs=21.2
Q ss_pred EccCCCchhHHHHHHhCCCCccccC
Q 003841 53 VGSQSSGKSSVLEALVGRDFLPRGN 77 (792)
Q Consensus 53 vG~qssGKSSlLeal~G~~~lPr~~ 77 (792)
.|.||||||+|||.|.|-.| ++-+
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~m~ 24 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DVMD 24 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-cccc
Confidence 49999999999999999987 6644
No 325
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=91.87 E-value=0.11 Score=54.46 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999983
No 326
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.87 E-value=0.11 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=21.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||..|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999983
No 327
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.83 E-value=0.11 Score=53.71 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=21.2
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999983
No 328
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.81 E-value=0.11 Score=53.68 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999984
No 329
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.78 E-value=0.11 Score=54.41 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||.+|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78899999999999999999983
No 330
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.77 E-value=0.11 Score=52.51 Aligned_cols=29 Identities=31% Similarity=0.615 Sum_probs=23.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
-|+|+|..+|||||++++|+|. +|...+.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~--i~~~~~~ 55 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF--IPPDERI 55 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh--cCCCCCE
Confidence 5899999999999999999987 3544443
No 331
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.75 E-value=0.12 Score=54.10 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999983
No 332
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.74 E-value=0.12 Score=52.33 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=24.3
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-.++++|..+|||||||+.|+|.. +-.+|
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G 54 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL--IPNGD 54 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC--CCCCc
Confidence 478899999999999999999984 34444
No 333
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.73 E-value=0.13 Score=53.80 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=23.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+|||||||..|+|.- |-.+|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 60 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE--RPTSG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 78899999999999999999983 44444
No 334
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=91.69 E-value=0.13 Score=52.86 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=23.8
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+||||+||..|+|.. +..+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 55 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE--EPDSG 55 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 68999999999999999999983 44444
No 335
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=91.68 E-value=0.14 Score=53.08 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=25.0
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~T 81 (792)
-++++|..+|||||||+.|+|.. +-.+|.++
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i~ 45 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD--APDEGDFI 45 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--cCCCCCEE
Confidence 56799999999999999999984 44555443
No 336
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.61 E-value=0.11 Score=51.19 Aligned_cols=22 Identities=36% Similarity=0.773 Sum_probs=17.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
+|||+|..|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5999999999999999999855
No 337
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.61 E-value=0.13 Score=51.60 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=23.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+||||+||..|+|.- +..+|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE--EPDSG 55 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 67799999999999999999983 54554
No 338
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.59 E-value=0.12 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.2
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||..|+|.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999983
No 339
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.59 E-value=0.13 Score=52.54 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
--.++++|..++|||+||+.|+|..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999999984
No 340
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=91.59 E-value=0.13 Score=53.85 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=23.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+|||||||..|+|.- |..+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G 55 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFL--RPTSG 55 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC--CCCCc
Confidence 68899999999999999999983 44444
No 341
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=91.57 E-value=0.13 Score=53.96 Aligned_cols=29 Identities=34% Similarity=0.334 Sum_probs=24.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
.++++|..+||||+||++|+|.- +-.+|.
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~ 59 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY--DPTSGE 59 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC--CCCCCE
Confidence 68999999999999999999983 444543
No 342
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.56 E-value=0.13 Score=53.45 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=24.0
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
.++|+|..++|||+||++|+|.. |-.+|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~ 59 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY--DPQKGQ 59 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCCE
Confidence 57899999999999999999984 444443
No 343
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=91.54 E-value=0.18 Score=50.75 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.|+|+|+.++|||||++.|.+..|
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~ 26 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF 26 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999986555
No 344
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.54 E-value=0.13 Score=51.20 Aligned_cols=23 Identities=17% Similarity=0.481 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..++|||+||..|+|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999983
No 345
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=91.53 E-value=0.13 Score=55.10 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=23.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+|||||||+.|+|.- +-.+|
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~--~p~~G 68 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMI--EPTSG 68 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCC
Confidence 68899999999999999999983 44444
No 346
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.49 E-value=0.14 Score=50.10 Aligned_cols=32 Identities=34% Similarity=0.393 Sum_probs=26.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~T 81 (792)
..++++|..++|||+|+++|.|.- +...|.+|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G~i~ 57 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSGEIL 57 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCccEEE
Confidence 478899999999999999999983 44555433
No 347
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.48 E-value=0.13 Score=52.62 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=25.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
-.++|+|..++|||+||++|+|.. +..+|.
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~ 64 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFL--EAEEGK 64 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc--CCCCCe
Confidence 478999999999999999999983 445554
No 348
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.41 E-value=0.49 Score=46.94 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=18.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+++|..++|||++.-.+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999998887644
No 349
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.41 E-value=0.14 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=22.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..++||||||+.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999984
No 350
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=91.35 E-value=0.14 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..++||||||+.|+|.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999983
No 351
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=91.33 E-value=0.15 Score=52.22 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=24.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-.++++|..++|||+||+.|+|.- |-.+|
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLS--PPLAG 55 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 478999999999999999999983 44454
No 352
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=91.31 E-value=0.1 Score=53.45 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=21.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-++|+|..+||||+||++|.|.
T Consensus 23 g~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 23 GLTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999876
No 353
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=91.31 E-value=0.14 Score=52.58 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999999983
No 354
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=91.30 E-value=0.15 Score=52.94 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=24.3
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-.++++|..+|||||||+.|+|.- +-.+|
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 60 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLL--KPTSG 60 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 379999999999999999999983 33444
No 355
>PRK13768 GTPase; Provisional
Probab=91.29 E-value=0.52 Score=50.30 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.1
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|..++||||+..++...
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~ 25 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDW 25 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 4789999999999999988744
No 356
>COG3910 Predicted ATPase [General function prediction only]
Probab=91.29 E-value=0.22 Score=50.61 Aligned_cols=46 Identities=33% Similarity=0.615 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHh-CCCCccccCC
Q 003841 26 IPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALV-GRDFLPRGND 78 (792)
Q Consensus 26 ~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~-G~~~lPr~~~ 78 (792)
+|++.-|+. .| .+.-|--+++|..++|||+|||||. |..|.+-|.+
T Consensus 23 lPa~r~l~~---~L----eF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~ 69 (233)
T COG3910 23 LPAFRHLEE---RL----EFRAPITFITGENGSGKSTLLEAIAAGMGFNAAGGG 69 (233)
T ss_pred chHHHhhhh---hc----cccCceEEEEcCCCccHHHHHHHHHhhccccccCCC
Confidence 366666664 12 5778999999999999999999995 3344455443
No 357
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=91.28 E-value=0.14 Score=53.67 Aligned_cols=29 Identities=28% Similarity=0.511 Sum_probs=24.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-.++++|..+||||+||+.|.|.. +..+|
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 58 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIV--PRDAG 58 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 368999999999999999999983 44444
No 358
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=91.28 E-value=0.15 Score=53.40 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999983
No 359
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.28 E-value=0.14 Score=53.82 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=23.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+||||+||..|+|.- +-.+|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 58 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI--DPTEG 58 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 68899999999999999999983 33444
No 360
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.26 E-value=0.15 Score=52.43 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=24.3
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-.++++|..+|||||||..|+|.. +..+|
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~--~~~~G 53 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFE--TPQSG 53 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 478999999999999999999994 44444
No 361
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=91.24 E-value=0.14 Score=53.82 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=24.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-.++++|..+|||||||+.|+|.. +..+|
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 57 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLE--MPRSG 57 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 468899999999999999999984 33444
No 362
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.22 E-value=0.14 Score=52.41 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=21.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+||||+||+.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 67899999999999999999983
No 363
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=91.21 E-value=0.15 Score=52.71 Aligned_cols=24 Identities=54% Similarity=0.692 Sum_probs=22.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..+|||||||..|+|.-
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999984
No 364
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.18 E-value=0.16 Score=54.38 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=26.1
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~ 80 (792)
--.++|+|.++|||||||+.|+|.. +-.+|.+
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl~--~p~~G~I 57 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGKL--KPNLGKF 57 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc--CCCCceE
Confidence 3479999999999999999999993 4445543
No 365
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=91.17 E-value=0.15 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||..|+|.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999983
No 366
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=91.15 E-value=0.13 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68899999999999999999983
No 367
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=91.13 E-value=0.17 Score=61.09 Aligned_cols=235 Identities=21% Similarity=0.238 Sum_probs=130.3
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCc--ccceeeccCCCccccChhH-HHHHHHH
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTD--EEYGEFLHLPGKRFYDFSE-IRREIQA 121 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~--~~~~~~~~~~g~~~~d~~~-i~~~i~~ 121 (792)
...+-|.+++.+..+++.+|+.|++.++++.|+...++ |.+.... -.|-.. -..+....++.. +..+..+
T Consensus 184 ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~------L~g~~~~l~~g~v~v-vnR~q~di~~~k~~~~al~~ 256 (657)
T KOG0446|consen 184 ATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTR------LVGRPITLKVGYVGV-VNRSQSIIDFKKSILEALND 256 (657)
T ss_pred hcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceee------ecCCccccccceeee-eccchhhhhhhhhHHHHHHh
Confidence 46788999999999999999999999999999987665 2222111 122211 111222223322 2222222
Q ss_pred HHHHhhcCCCCcCcCceEEEEecCCcceeEEeecC-------------------------------CCCCCCchhhHHHH
Q 003841 122 QTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLP-------------------------------VTPANSDLANSDAL 170 (792)
Q Consensus 122 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLP-------------------------------V~~a~~Dl~~~~al 170 (792)
+....... ...+..+.. ..+|.|... |+ ...++.+.+++.++
T Consensus 257 e~~~f~~~----p~y~~~~~~--~g~p~La~~-L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~~~g~~~~~~~~~~~l 329 (657)
T KOG0446|consen 257 EVPSFESV----PSYPILLTI--SGVPYLALL-LPGYLQSHIRDQLPELKTKINKLLEKYQDELNRIGAVDVDLANSAAL 329 (657)
T ss_pred hhhhhhcc----ccccccccc--cCcchHHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcccCCccchhhHH
Confidence 11111100 000111111 334444333 44 11267778888877
Q ss_pred HHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCcccccCeeEEecCChhhhhcccCHHHHHHHHHHhhcCCCCCCC
Q 003841 171 QIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNG 250 (792)
Q Consensus 171 ~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L~lGy~~V~nrsq~di~~~~s~~ea~~~E~~fF~~~~~~~~ 250 (792)
......++.+-++ +|.++.|.++ +++ ........+.+..+|..+.++-+.+ ...+..+-+.....+ .. +...-
T Consensus 330 l~~i~~~~~~~~~-~v~g~~~~~~-~~e-lsggari~~~F~~~f~~~i~~i~~~--~~~~~~~i~~~i~~~-~G-~~~~l 402 (657)
T KOG0446|consen 330 LAIIREDPRGLRT-GVIGKLDLVP-TKA-LSGGARINYPFHGGFPGVIKKLPPD--RKLLGQNIEKLVSEA-SG-IRPSL 402 (657)
T ss_pred HHHHHHHHHHHHH-hhcccccccc-hhc-ccchhhhhhhhhhccchhhhcCCcc--hhhhHHHHHHHHHhc-cC-CCccc
Confidence 7666666777888 9999999985 322 1111112355666676666655443 233333333333322 21 22223
Q ss_pred cccccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHcCCC
Q 003841 251 LADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAK--EHASYGEI 300 (792)
Q Consensus 251 l~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~~~--eL~~lg~~ 300 (792)
+....+-..|.+..-+.|.+.-.+++-.+-+++...+..+-. ++.+|+.-
T Consensus 403 f~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~~l~rfp~l 454 (657)
T KOG0446|consen 403 FVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRATELKRFPVL 454 (657)
T ss_pred cCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHH
Confidence 334566666777777777777777888888888877777777 67777654
No 368
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.11 E-value=0.16 Score=52.45 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=24.2
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
.++++|..++|||+||+.|+|.- +..+|.
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~ 67 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL--HVESGQ 67 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCee
Confidence 68899999999999999999983 445553
No 369
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=91.11 E-value=0.15 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||..|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 67899999999999999999984
No 370
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.11 E-value=0.16 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=22.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
=.++++|..+||||+||..|+|.-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999984
No 371
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=91.11 E-value=0.16 Score=52.48 Aligned_cols=29 Identities=34% Similarity=0.491 Sum_probs=24.0
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
-++|+|..+||||+||..|+|.. +..+|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~ 60 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLY--KPTSGS 60 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCCe
Confidence 57899999999999999999984 444443
No 372
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.08 E-value=0.15 Score=55.36 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=23.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+|||||||+.|+|.. +-.+|
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~--~p~~G 62 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALL--KPSSG 62 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 68899999999999999999983 44555
No 373
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.08 E-value=0.16 Score=50.71 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=24.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
-.++++|..++|||+||..|+|.. +..+|.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~--~~~~G~ 58 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL--RPTSGR 58 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc--CCCCCe
Confidence 368999999999999999999983 444443
No 374
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=91.08 E-value=0.15 Score=55.97 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=24.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
.++++|..+||||+|++.|+|.- |-.+|.
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~--~p~~G~ 63 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALL--LPDTGT 63 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC--CCCCcE
Confidence 79999999999999999999983 444553
No 375
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=91.06 E-value=0.16 Score=54.19 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++|+|..+|||||||+.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999984
No 376
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=91.01 E-value=0.17 Score=51.82 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..++|||+||+.|+|..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378899999999999999999983
No 377
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=91.01 E-value=1.8 Score=48.21 Aligned_cols=130 Identities=19% Similarity=0.294 Sum_probs=67.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCCC-----ccc-EEEEEeeccC-cc---cceeeccCCCccc-c----Chh
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT-----RRP-LVLQLLQTKT-DE---EYGEFLHLPGKRF-Y----DFS 113 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~T-----R~P-~~l~l~~~~~-~~---~~~~~~~~~g~~~-~----d~~ 113 (792)
.|.|||..|+|||+++|.|.|.. +-.+.+.-. ..| +++......- .+ -....++.||.+- . .++
T Consensus 25 ~im~~G~sG~GKttfiNtL~~~~-l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we 103 (373)
T COG5019 25 TIMVVGESGLGKTTFINTLFGTS-LVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWE 103 (373)
T ss_pred EEEEecCCCCchhHHHHhhhHhh-ccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHH
Confidence 68999999999999999999984 222221111 122 2333222110 01 1122456777541 1 244
Q ss_pred HHHHHHHHHHHHhhc------CCCCcCcCceEEEEe--cCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEE
Q 003841 114 EIRREIQAQTDKEAG------GNKGVSDKQIRLKIF--SPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIG 185 (792)
Q Consensus 114 ~i~~~i~~~~~~~~g------~~~~~s~~~i~l~i~--~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIG 185 (792)
-|.+.|....+.+.. .+..|.+..+.+.++ .|+--.|+-+| +...+++. ..-..|-
T Consensus 104 ~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~D---------------Ie~Mk~ls-~~vNlIP 167 (373)
T COG5019 104 PIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLD---------------IEAMKRLS-KRVNLIP 167 (373)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHH---------------HHHHHHHh-cccCeee
Confidence 566667665544322 222355555544322 33333333333 22333332 2346799
Q ss_pred EeecCCCCCC
Q 003841 186 IITKLDIMDR 195 (792)
Q Consensus 186 VlTK~D~~~~ 195 (792)
||.|.|.+..
T Consensus 168 VI~KaD~lT~ 177 (373)
T COG5019 168 VIAKADTLTD 177 (373)
T ss_pred eeeccccCCH
Confidence 9999999864
No 378
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=91.00 E-value=0.17 Score=52.56 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=22.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..+||||+||+.|+|.-
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999983
No 379
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=90.99 E-value=0.16 Score=52.86 Aligned_cols=24 Identities=42% Similarity=0.711 Sum_probs=22.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
--++++|..++||||||..|+|.-
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999999999983
No 380
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.98 E-value=0.17 Score=52.09 Aligned_cols=29 Identities=24% Similarity=0.477 Sum_probs=24.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-.++++|..++|||+||+.|+|.. +-.+|
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 57 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGLL--PPAAG 57 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 367899999999999999999984 33444
No 381
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=90.98 E-value=0.17 Score=50.19 Aligned_cols=28 Identities=36% Similarity=0.620 Sum_probs=23.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++|+|..+||||||++.|.|.. +-.+|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 56 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW--PWGSG 56 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 68999999999999999999983 44454
No 382
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.96 E-value=0.16 Score=53.07 Aligned_cols=29 Identities=34% Similarity=0.445 Sum_probs=24.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-.++|+|..+||||+||+.|+|.. |-.+|
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G 56 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFY--DVSSG 56 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc--CCCCC
Confidence 367899999999999999999984 44444
No 383
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=90.92 E-value=0.16 Score=53.69 Aligned_cols=29 Identities=34% Similarity=0.548 Sum_probs=24.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-.++++|..+||||+||+.|+|.. |-.+|
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 58 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLGCLAGRL--APDHG 58 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 378999999999999999999984 34444
No 384
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=90.91 E-value=0.17 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
-.++++|..+||||+||+.|+|.
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 34 EIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHcCC
Confidence 37889999999999999999997
No 385
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=90.90 E-value=0.18 Score=53.57 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=24.1
Q ss_pred CCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 44 TIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 44 ~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.++..-.++||..+||||+||+||.|.
T Consensus 22 ~~~~~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 22 GFDPQFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999987
No 386
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=90.87 E-value=0.16 Score=51.50 Aligned_cols=35 Identities=29% Similarity=0.411 Sum_probs=26.1
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCCCcc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRR 83 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~ 83 (792)
-||+.|.+++|||||+.+|.-..-+-.+-..+||-
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~ 40 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRK 40 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCC
Confidence 47999999999999999998775333333455553
No 387
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.86 E-value=0.16 Score=53.15 Aligned_cols=29 Identities=17% Similarity=0.401 Sum_probs=24.3
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
=.++++|.+++|||+||+.|.|.- +...|
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~--~~~~G 55 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFE--TPTSG 55 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CCCce
Confidence 378999999999999999999994 34444
No 388
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=90.82 E-value=0.17 Score=52.85 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|..
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999994
No 389
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.76 E-value=0.17 Score=54.84 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+|||||||..|+|.- +-.+|
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G 66 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLI--ISETG 66 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 68899999999999999999983 33444
No 390
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.75 E-value=0.18 Score=53.11 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=23.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..++|||+||..|+|.. +..+|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 56 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLI--EPTSG 56 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 57899999999999999999983 44444
No 391
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=90.75 E-value=0.2 Score=53.60 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.8
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-++++|..+|||||||.+|.|.
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4889999999999999999998
No 392
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=90.73 E-value=0.17 Score=53.15 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=24.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
.++++|..++|||+|++.|+|.- +..+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~ 56 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIAGLE--QPDSGR 56 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCceE
Confidence 78899999999999999999983 445553
No 393
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.73 E-value=0.18 Score=51.94 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=22.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++|+|..+|||||||+.|+|.-
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 567999999999999999999983
No 394
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.73 E-value=0.17 Score=54.71 Aligned_cols=28 Identities=36% Similarity=0.375 Sum_probs=23.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++|+|..++||||||+.|+|.- +-.+|
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~--~p~~G 62 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLL--LPEAG 62 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCCCc
Confidence 57999999999999999999993 33444
No 395
>PRK10908 cell division protein FtsE; Provisional
Probab=90.72 E-value=0.17 Score=52.52 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=24.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-.++++|..+||||+||..|+|.. |-.+|
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 57 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIE--RPSAG 57 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 467899999999999999999984 44444
No 396
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.71 E-value=0.19 Score=50.10 Aligned_cols=29 Identities=34% Similarity=0.466 Sum_probs=24.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-.++++|..++|||+||..|+|.- |-.+|
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~--~~~~G 57 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY--DPTSG 57 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC--CCCCC
Confidence 478999999999999999999984 44444
No 397
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.70 E-value=0.17 Score=52.73 Aligned_cols=28 Identities=29% Similarity=0.359 Sum_probs=23.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+||||+||+.|+|.- |-.+|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 57 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFY--DVDSG 57 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--cCCCC
Confidence 68899999999999999999994 33444
No 398
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.67 E-value=0.18 Score=51.59 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=22.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..+||||+|++.|+|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999984
No 399
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.66 E-value=0.71 Score=53.09 Aligned_cols=50 Identities=28% Similarity=0.224 Sum_probs=31.0
Q ss_pred hHHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCcccccCeeEE
Q 003841 166 NSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 217 (792)
Q Consensus 166 ~~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L~lGy~~V 217 (792)
.+++...|+.+...-.-+=.|+||+|-..++..+.++..--..|+ -|+++
T Consensus 225 gq~~~~~a~~f~~~v~i~giIlTKlD~~~~~G~~lsi~~~~~~PI--~fi~~ 274 (428)
T TIGR00959 225 GQDAVNTAKTFNERLGLTGVVLTKLDGDARGGAALSVRSVTGKPI--KFIGV 274 (428)
T ss_pred hHHHHHHHHHHHhhCCCCEEEEeCccCcccccHHHHHHHHHCcCE--EEEeC
Confidence 467777888776544456667999997666655655544333343 35554
No 400
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.62 E-value=0.19 Score=51.05 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=24.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-.++++|..+|||||||..|.|....+..+|
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G 64 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGRKTAGVITG 64 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCcce
Confidence 4678999999999999999999742233444
No 401
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=90.60 E-value=0.18 Score=52.73 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+||||+||+.|+|.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999994
No 402
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.58 E-value=0.17 Score=53.04 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=21.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+||||+||..|+|.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999984
No 403
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=90.57 E-value=0.19 Score=50.29 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=23.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++|+|..++|||+||+.|.|.. |-.+|
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~--~~~~G 57 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDL--KPQQG 57 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccC--CCCCC
Confidence 57799999999999999999984 43444
No 404
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=90.55 E-value=0.18 Score=52.33 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=24.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-.++++|..++||||||+.|+|.- |-.+|
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGIL--RPTSG 55 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 367899999999999999999983 44444
No 405
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.54 E-value=0.17 Score=51.90 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=21.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+||||+||+.|+|..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccC
Confidence 78899999999999999999994
No 406
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.54 E-value=0.2 Score=51.96 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=28.2
Q ss_pred eEEeecCCCCCCCchhhHH-HHHHHhhhCCCCCeEEEEeecC
Q 003841 150 ITLVDLPVTPANSDLANSD-ALQIAGIADPDGYRTIGIITKL 190 (792)
Q Consensus 150 LtlVDLPV~~a~~Dl~~~~-al~la~~vDp~g~RTIGVlTK~ 190 (792)
..|.|=|+. .-|+..|. .+++||++-..|--++.|+--.
T Consensus 162 ~L~LDEPts--aLDi~HQ~~tl~laR~la~~g~~V~~VLHDL 201 (259)
T COG4559 162 WLFLDEPTS--ALDIAHQHHTLRLARQLAREGGAVLAVLHDL 201 (259)
T ss_pred eEEecCCcc--ccchHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 456786643 45777664 5899999988898888886543
No 407
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.54 E-value=0.18 Score=54.82 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=24.0
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+||||+||+.|.|.- +..+|
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~--~p~~G 61 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLL--QPTEG 61 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCC--CCCCc
Confidence 69999999999999999999984 44444
No 408
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=90.53 E-value=0.19 Score=51.32 Aligned_cols=29 Identities=45% Similarity=0.543 Sum_probs=24.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
.++|+|..++||||||+.|+|.. +-.+|.
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~--~~~~G~ 61 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGEL--EKLSGS 61 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcC--CCCCCe
Confidence 78899999999999999999984 444543
No 409
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=90.52 E-value=0.19 Score=52.37 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++|+|..+||||+||+.|+|..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999973
No 410
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.52 E-value=0.23 Score=51.62 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=39.4
Q ss_pred ceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCcccccCeeEEec
Q 003841 148 LDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVN 219 (792)
Q Consensus 148 ~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L~lGy~~V~n 219 (792)
|.+-|.|=|.+.-.-.+ ..+.|...++.-.+| -|..|+|. -| ...+-+..+++-+.-|.+..-.
T Consensus 155 P~vmLFDEPTSALDPEl-v~EVL~vm~~LA~eG-mTMivVTH--EM----~FAr~VadrviFmd~G~iie~g 218 (240)
T COG1126 155 PKVMLFDEPTSALDPEL-VGEVLDVMKDLAEEG-MTMIIVTH--EM----GFAREVADRVIFMDQGKIIEEG 218 (240)
T ss_pred CCEEeecCCcccCCHHH-HHHHHHHHHHHHHcC-CeEEEEec--hh----HHHHHhhheEEEeeCCEEEEec
Confidence 57788897744333222 345677777776677 78888886 11 1223345667777788766544
No 411
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=90.50 E-value=0.18 Score=53.96 Aligned_cols=24 Identities=46% Similarity=0.648 Sum_probs=22.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..+|||||||..|+|..
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999984
No 412
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=90.49 E-value=0.2 Score=50.32 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=24.7
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
-.++++|..++|||||++.|+|.. +-.+|.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~--~~~~G~ 55 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL--KPSSGE 55 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCCcE
Confidence 378899999999999999999983 444553
No 413
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.48 E-value=0.18 Score=54.11 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++|+|..+|||||||..|+|.-
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 36 EYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999999994
No 414
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.48 E-value=1.6 Score=48.90 Aligned_cols=133 Identities=19% Similarity=0.225 Sum_probs=67.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCcccc--CCCCCccc--EEEEEeeccCccc-----ceeeccCCCccc-----cChh
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRG--NDICTRRP--LVLQLLQTKTDEE-----YGEFLHLPGKRF-----YDFS 113 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~--~~~~TR~P--~~l~l~~~~~~~~-----~~~~~~~~g~~~-----~d~~ 113 (792)
-.|-|||+.+.||||++|+|.+.++-.-. .+..++-+ +.+.-.... ..+ -...++.||.+- ..|.
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~-iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVE-IEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeee-ecCCCeEEeeEEeccCCCcccccccccch
Confidence 36899999999999999999988642210 11111111 111111110 011 012345676531 1244
Q ss_pred HHHHHHHHHHHHhhcCC-----CCcCcCceEEEE--ecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEE
Q 003841 114 EIRREIQAQTDKEAGGN-----KGVSDKQIRLKI--FSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGI 186 (792)
Q Consensus 114 ~i~~~i~~~~~~~~g~~-----~~~s~~~i~l~i--~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGV 186 (792)
-|.+.|....+.+.... ..+.+..|...+ -.|.--.|.-+| + ...+++. ..-.+|.|
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D---------i------~~Mk~l~-~~vNiIPV 164 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD---------I------EFMKKLS-KKVNLIPV 164 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh---------H------HHHHHHh-ccccccce
Confidence 56666665555443221 234444444322 244433333333 2 2223332 35678999
Q ss_pred eecCCCCCCcc
Q 003841 187 ITKLDIMDRGT 197 (792)
Q Consensus 187 lTK~D~~~~gt 197 (792)
|.|.|.+....
T Consensus 165 I~KaD~lT~~E 175 (366)
T KOG2655|consen 165 IAKADTLTKDE 175 (366)
T ss_pred eeccccCCHHH
Confidence 99999997653
No 415
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.43 E-value=0.27 Score=50.08 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.2
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-||++|.++||||||++.|...
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999865
No 416
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.43 E-value=0.18 Score=54.04 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=23.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+|||||||..|+|.- +-.+|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 56 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLL--RPQKG 56 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC--CCCcc
Confidence 68899999999999999999983 43444
No 417
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=90.42 E-value=0.19 Score=53.82 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=24.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-.++++|..+||||+||+.|+|.. +..+|
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~G~~--~~~~G 62 (265)
T PRK10253 34 HFTAIIGPNGCGKSTLLRTLSRLM--TPAHG 62 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC--CCCCc
Confidence 378999999999999999999983 44444
No 418
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.39 E-value=0.18 Score=54.32 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=23.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++|+|..+||||+||+.|+|.- +..+|
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~--~p~~G 59 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGIL--KPTSG 59 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCce
Confidence 56899999999999999999983 44444
No 419
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=90.38 E-value=0.21 Score=54.29 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=24.8
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~ 80 (792)
.++|+|..+||||+||+.|.|.- |-.+|.+
T Consensus 65 ~~~liG~NGsGKSTLl~~I~Gl~--~p~~G~I 94 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLILGEL--EPSEGKI 94 (282)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEE
Confidence 68899999999999999999983 5555543
No 420
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=90.35 E-value=0.2 Score=51.67 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=24.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-.++++|..+||||+||+.|+|.- +..+|
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 53 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFI--EPASG 53 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 478999999999999999999983 44454
No 421
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=90.35 E-value=0.23 Score=50.53 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=22.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..+||||+||+.|+|.-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999983
No 422
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.32 E-value=0.19 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999984
No 423
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=90.32 E-value=0.19 Score=53.67 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=22.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..+||||+||..|+|.-
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999983
No 424
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.29 E-value=0.23 Score=52.20 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=24.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
--|++||.++||||+||.+|.|. .+.++|
T Consensus 31 E~VaiIG~SGaGKSTLLR~lngl--~d~t~G 59 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNGL--VDPTSG 59 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhcc--cCCCcc
Confidence 36899999999999999999995 355554
No 425
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=90.24 E-value=0.2 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+||||+|+++|+|.-
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 67899999999999999999983
No 426
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.24 E-value=0.22 Score=52.91 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||..|+|.-
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999984
No 427
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.23 E-value=2.4 Score=41.50 Aligned_cols=27 Identities=26% Similarity=0.408 Sum_probs=24.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
-.|.|||..|+||+|+|-.-.|-.|-|
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~ 48 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTS 48 (193)
T ss_pred eeEEEEccCCccchhhhHHhhcccccc
Confidence 389999999999999999999987754
No 428
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=90.21 E-value=0.21 Score=52.42 Aligned_cols=23 Identities=17% Similarity=0.638 Sum_probs=21.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..++||||||..|+|.-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999983
No 429
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.19 E-value=0.2 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 77899999999999999999983
No 430
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.18 E-value=0.2 Score=53.95 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=24.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
.++++|..+|||||||..|+|. +|..+|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~ 58 (275)
T PRK13639 30 MVALLGPNGAGKSTLFLHFNGI--LKPTSGE 58 (275)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCccE
Confidence 7899999999999999999998 3555553
No 431
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=90.17 E-value=0.19 Score=52.32 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..+||||||++.|+|.-
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378899999999999999999983
No 432
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=90.17 E-value=0.2 Score=54.07 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=23.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+||||+||.+|+|.- +..+|
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G 65 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNALL--IPSEG 65 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58899999999999999999994 44444
No 433
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=90.15 E-value=0.21 Score=53.23 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=24.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~T 81 (792)
-+++||..+|||||||.+|+|. ++-.+|.++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl--l~p~~G~i~ 62 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL--LKPSSGEIK 62 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCcceEE
Confidence 5889999999999999999997 334444433
No 434
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=90.12 E-value=0.21 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+||||+|+..|+|..
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999984
No 435
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=90.11 E-value=1.1 Score=52.19 Aligned_cols=118 Identities=22% Similarity=0.307 Sum_probs=71.5
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHH
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~ 124 (792)
..-|-++|+|--=-||||||-.|=+-..-+...|.-|-----.+.........+--|++.||..- |..+|.
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeA--Ft~mRa------- 73 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEA--FTAMRA------- 73 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHH--HHHHHh-------
Confidence 45799999999999999999999777655666665553211112111100123456777777431 222221
Q ss_pred HhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCch--hhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDL--ANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl--~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
-| ..+++- -..+|| ++..+ .+-+|+..||.+ |..+|..+||+|+.+.
T Consensus 74 --RG--a~vtDI------------aILVVa-----~dDGv~pQTiEAI~hak~a---~vP~iVAiNKiDk~~~ 122 (509)
T COG0532 74 --RG--ASVTDI------------AILVVA-----ADDGVMPQTIEAINHAKAA---GVPIVVAINKIDKPEA 122 (509)
T ss_pred --cC--CccccE------------EEEEEE-----ccCCcchhHHHHHHHHHHC---CCCEEEEEecccCCCC
Confidence 11 122221 112244 66654 466788999985 6899999999999853
No 436
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=90.11 E-value=0.2 Score=52.83 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+||||+||+.|+|.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999983
No 437
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=90.08 E-value=0.21 Score=49.80 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.6
Q ss_pred CCCeEEEEccCCCchhHHHHHHh
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~ 68 (792)
+.|-|+|+|..+|||||+.+.|+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999999998
No 438
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=90.07 E-value=0.2 Score=53.19 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++|+|..++|||+||+.|.|.- +-.+|
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G 60 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLE--KPSEG 60 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCe
Confidence 56799999999999999999984 33444
No 439
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=90.06 E-value=0.85 Score=55.45 Aligned_cols=114 Identities=20% Similarity=0.289 Sum_probs=68.8
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
.+--|.++|---+|||||.|+|+=. +|...+ + ++.. .|-.+.|+.+..+ +|
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~------tG~i~k-~--------------G~v~--~g~~~~D~~e~Eq------eR 59 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFY------TGIISK-I--------------GEVH--DGAATMDWMEQEQ------ER 59 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHH------cCCcCC-C--------------cccc--CCCccCCCcHHHH------hc
Confidence 3456899999999999999999622 111111 0 0000 1334555544221 12
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecC---------------------CCCCCCchhhHHHHHHHhhhCCCCCeEE
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLP---------------------VTPANSDLANSDALQIAGIADPDGYRTI 184 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLP---------------------V~~a~~Dl~~~~al~la~~vDp~g~RTI 184 (792)
+-+|....+.+...+ +. .+.|||+| |+.|..++.-|. -.+-|.++..+.+.|
T Consensus 60 ----GITI~saa~s~~~~~-~~-~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QT-Etv~rqa~~~~vp~i 132 (697)
T COG0480 60 ----GITITSAATTLFWKG-DY-RINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQADKYGVPRI 132 (697)
T ss_pred ----CCEEeeeeeEEEEcC-ce-EEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecH-HHHHHHHhhcCCCeE
Confidence 123444555555544 22 56778888 455666665443 455667777889999
Q ss_pred EEeecCCCCCC
Q 003841 185 GIITKLDIMDR 195 (792)
Q Consensus 185 GVlTK~D~~~~ 195 (792)
.++||.|++..
T Consensus 133 ~fiNKmDR~~a 143 (697)
T COG0480 133 LFVNKMDRLGA 143 (697)
T ss_pred EEEECcccccc
Confidence 99999999854
No 440
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=90.03 E-value=0.22 Score=51.48 Aligned_cols=28 Identities=39% Similarity=0.444 Sum_probs=23.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-++|+|..+||||+||..|+|.. +..+|
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 59 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLV--ELSSG 59 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCCC
Confidence 68899999999999999999984 44444
No 441
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=90.00 E-value=0.58 Score=51.07 Aligned_cols=60 Identities=18% Similarity=0.421 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEE
Q 003841 26 IPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQL 89 (792)
Q Consensus 26 ~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l 89 (792)
..++++|.+++. -......|-+.+||+.|.|||++++.+... +.|...+..+++|+...-
T Consensus 43 ~~~L~~L~~Ll~---~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~-hp~~~d~~~~~~PVv~vq 102 (302)
T PF05621_consen 43 KEALDRLEELLE---YPKRHRMPNLLIVGDSNNGKTMIIERFRRL-HPPQSDEDAERIPVVYVQ 102 (302)
T ss_pred HHHHHHHHHHHh---CCcccCCCceEEecCCCCcHHHHHHHHHHH-CCCCCCCCCccccEEEEe
Confidence 457788888765 235678899999999999999999999865 445555566778875543
No 442
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=89.99 E-value=0.21 Score=52.81 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=22.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..+||||+||..|+|.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 32 EIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc
Confidence 468899999999999999999983
No 443
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=89.99 E-value=0.22 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+||||+||++|+|.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 67899999999999999999984
No 444
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=89.91 E-value=0.21 Score=53.59 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=24.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
-.++|+|..+||||+||..|+|.- |..+|.
T Consensus 51 e~~~liG~NGsGKSTLlk~L~Gl~--~p~~G~ 80 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSNIIGGSL--SPTVGK 80 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc--CCCceE
Confidence 468899999999999999999983 444554
No 445
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=89.86 E-value=0.23 Score=52.81 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=22.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..+||||+||..|+|..
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999984
No 446
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.84 E-value=0.23 Score=54.93 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=24.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
.++++|..+||||||++.|+|.- +..+|.
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~Gl~--~p~~G~ 82 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLI--KSKYGT 82 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCCe
Confidence 69999999999999999999984 444443
No 447
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=89.81 E-value=0.23 Score=52.72 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=23.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..++|||+||+.|+|.- +-.+|
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G 56 (256)
T TIGR03873 29 LTGLLGPNGSGKSTLLRLLAGAL--RPDAG 56 (256)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC--CCCCC
Confidence 67899999999999999999983 44444
No 448
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=89.79 E-value=0.24 Score=55.04 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=23.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~ 77 (792)
-+|++|.++|||||+|+.|.|..- |.+.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~-~~~G 58 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE-PTSG 58 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CCCc
Confidence 589999999999999999999963 4433
No 449
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=89.76 E-value=1.8 Score=50.05 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=23.2
Q ss_pred CCCCCeEEEEccCCCchhHHHHHHhCCC
Q 003841 44 TIELPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 44 ~i~lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
+.+.+.+.|||-.|+||||+++-++--+
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtrad 192 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRAD 192 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccc
Confidence 4466899999999999999888776543
No 450
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=89.76 E-value=0.23 Score=52.33 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=21.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|.+++|||+||..|+|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCc
Confidence 368999999999999999999983
No 451
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=89.74 E-value=0.23 Score=51.58 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++|+|..++|||+|++.|+|.-
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 67999999999999999999983
No 452
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=89.73 E-value=0.28 Score=49.68 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
-.|+|||+.++|||||+..++...|
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f 28 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF 28 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC
Confidence 3799999999999999999998776
No 453
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=89.70 E-value=0.23 Score=52.59 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+||||+||+.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999984
No 454
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.65 E-value=0.23 Score=53.54 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=24.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
=.++++|..+||||+||..|+|.- +-.+|
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 60 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGIY--LPQRG 60 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC--CCCce
Confidence 378999999999999999999983 33444
No 455
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=89.62 E-value=0.29 Score=50.62 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=22.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..++|||+||+.|+|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 28 QLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 479999999999999999999994
No 456
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.62 E-value=0.23 Score=53.71 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=24.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
.++++|..++|||||+..|+|.- +..+|.
T Consensus 34 ~~~i~G~nGaGKSTLl~~i~Gl~--~p~~G~ 62 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGIL--KPSSGR 62 (283)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCccE
Confidence 78999999999999999999983 445553
No 457
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=89.59 E-value=0.82 Score=49.42 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|+|+|.+++||||++-.|...
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6889999999999999999854
No 458
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=89.58 E-value=0.28 Score=50.86 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.1
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++|+|..++|||+|++.|+|. +|..+|
T Consensus 33 ~~~I~G~nGsGKStLl~~l~G~--~~~~~G 60 (220)
T TIGR02982 33 IVILTGPSGSGKTTLLTLIGGL--RSVQEG 60 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCe
Confidence 7999999999999999999998 344454
No 459
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=89.57 E-value=0.23 Score=53.32 Aligned_cols=25 Identities=40% Similarity=0.504 Sum_probs=22.5
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
--.++++|..+||||+||+.|+|.-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 33 GSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999983
No 460
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=89.53 E-value=0.24 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..++||||||..|+|.-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999983
No 461
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.50 E-value=0.24 Score=53.77 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=21.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..++|||+||..|+|.-
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~ 57 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLL 57 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999983
No 462
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=89.49 E-value=0.25 Score=52.99 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=21.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+||||+||..|+|.-
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999994
No 463
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=89.38 E-value=0.27 Score=51.42 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+||||+||..|+|.-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999984
No 464
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=89.33 E-value=0.26 Score=52.30 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=23.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+||||+||+.|+|.- +..+|
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G 57 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFARLL--TPQSG 57 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--CCCCc
Confidence 57899999999999999999983 44444
No 465
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=89.30 E-value=0.25 Score=52.61 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++|+|..+|||||||+.|+|.-
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999983
No 466
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.28 E-value=0.29 Score=52.79 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999984
No 467
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=89.23 E-value=0.3 Score=57.10 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=24.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-.+|+||.+++|||||++.|.|. +|-.+|
T Consensus 348 ~~talvG~SGaGKSTLl~lL~G~--~~~~~G 376 (559)
T COG4988 348 QLTALVGASGAGKSTLLNLLLGF--LAPTQG 376 (559)
T ss_pred cEEEEECCCCCCHHHHHHHHhCc--CCCCCc
Confidence 48999999999999999999998 454444
No 468
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=89.22 E-value=0.27 Score=52.37 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=21.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999983
No 469
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.19 E-value=0.27 Score=53.34 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||..|+|..
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999984
No 470
>PRK14738 gmk guanylate kinase; Provisional
Probab=89.18 E-value=0.35 Score=49.85 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.0
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|||+|.++||||||++.|...
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhc
Confidence 4667899999999999999754
No 471
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=89.18 E-value=0.26 Score=53.11 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+||||+||++|.|.-
T Consensus 29 ~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 29 VTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999983
No 472
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.10 E-value=0.28 Score=49.51 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-|+++|.++||||||+..|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48999999999999999998874
No 473
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.10 E-value=0.28 Score=52.87 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=23.8
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..++|||+||+.|+|.- +-.+|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 57 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLL--RPQKG 57 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 78999999999999999999983 33444
No 474
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=88.99 E-value=0.25 Score=52.40 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
+-++|+|..+|||||+|+||.+.-
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l 46 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVL 46 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999873
No 475
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=88.90 E-value=0.41 Score=47.34 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 28 ~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.+++|.+.+. ....-.-+-|+|+|..|+|||+||+++...
T Consensus 8 e~~~l~~~l~---~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 8 EIERLRDLLD---AAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp HHHHHHHTTG---GTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4556665543 223345589999999999999999998765
No 476
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=88.81 E-value=0.28 Score=53.56 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=21.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999983
No 477
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.79 E-value=0.3 Score=52.69 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=24.6
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-.++++|..++|||+|++.|+|.- |..+|
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl~--~~~~G 62 (277)
T PRK13642 34 EWVSIIGQNGSGKSTTARLIDGLF--EEFEG 62 (277)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC--CCCCC
Confidence 369999999999999999999994 44444
No 478
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=88.79 E-value=0.3 Score=51.95 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=24.0
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++|+|..++|||+||..|+|.- |..+|
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G 76 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMV--DIFDG 76 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHccc--CCCCC
Confidence 78899999999999999999983 44444
No 479
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=88.77 E-value=0.28 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+||||+||..|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68899999999999999999994
No 480
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=88.77 E-value=0.29 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||..|+|.-
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999984
No 481
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=88.74 E-value=0.3 Score=49.29 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=23.6
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
...|-|+|||..+||||+|++.|++.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 35788999999999999999999977
No 482
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.70 E-value=0.3 Score=51.53 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=21.2
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..++||||||++|+|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58899999999999999999983
No 483
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=88.65 E-value=0.38 Score=49.51 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=21.5
Q ss_pred CCCCCeEEEEccCCCchhHHHHH-HhCC
Q 003841 44 TIELPQVAVVGSQSSGKSSVLEA-LVGR 70 (792)
Q Consensus 44 ~i~lPqIvVvG~qssGKSSlLea-l~G~ 70 (792)
....-+|+++|+.+||||||++. +.|.
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~ 33 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGE 33 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCC
Confidence 34456899999999999999975 5554
No 484
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.61 E-value=0.31 Score=51.45 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68899999999999999999984
No 485
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=88.60 E-value=0.32 Score=51.42 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=21.0
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.++++|..+||||+||+.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999997
No 486
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=88.56 E-value=0.32 Score=51.76 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++|+|..+||||+||+.|+|.-
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68899999999999999999984
No 487
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.55 E-value=0.3 Score=54.55 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=26.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~T 81 (792)
--|+|+|..+|||||++++|++. +|.+..++|
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~--i~~~~rivt 194 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISA--IPPQERLIT 194 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcc--cCCCCCEEE
Confidence 35999999999999999999976 466655544
No 488
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=88.54 E-value=0.32 Score=49.55 Aligned_cols=24 Identities=42% Similarity=0.714 Sum_probs=21.7
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..++|||+||+.|+|..
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999983
No 489
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.53 E-value=0.31 Score=52.98 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=23.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|..+||||+|+..|+|.. +..+|
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 62 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLL--QPTSG 62 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCCCc
Confidence 78999999999999999999984 44444
No 490
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=88.51 E-value=1.7 Score=56.32 Aligned_cols=52 Identities=29% Similarity=0.526 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHHHh------CCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCccccC
Q 003841 24 SVIPLVNKLQDIFAQL------GSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (792)
Q Consensus 24 ~l~~~~nkL~d~~~~~------G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~ 77 (792)
++-.+-.++.+.+..| |-..-..||=.+|||.++|||||+|..- |..| |-..
T Consensus 82 ~~~~l~~~~~~a~~~Lk~~~~~~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~~ 139 (1169)
T TIGR03348 82 EIRELRARFNEALALLKRSRLGGRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLAE 139 (1169)
T ss_pred HHHHHHHHHHHHHHHHhhccccCchhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCch
Confidence 3334445555555444 2223468999999999999999999986 9986 7754
No 491
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=88.47 E-value=0.32 Score=52.15 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=22.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..+||||+||..|.|..
T Consensus 39 e~~~i~G~nGsGKSTLl~~l~Gl~ 62 (268)
T PRK10419 39 ETVALLGRSGCGKSTLARLLVGLE 62 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999984
No 492
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.42 E-value=0.33 Score=51.25 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=22.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..+||||+||+.|.|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 478999999999999999999983
No 493
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=88.40 E-value=0.37 Score=48.20 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=23.0
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
.--+|+|+|-++|||||+|+.|....
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~ 38 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGE 38 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSS
T ss_pred cEEEEEEECCCccchHHHHHHhhhcc
Confidence 44589999999999999999998764
No 494
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.31 E-value=0.34 Score=51.37 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=22.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..+|||||||++|+|..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 34 SITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 478899999999999999999984
No 495
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=88.29 E-value=0.35 Score=50.54 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+||||+||+.|+|.-
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999984
No 496
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=88.29 E-value=0.14 Score=51.94 Aligned_cols=20 Identities=40% Similarity=0.615 Sum_probs=0.0
Q ss_pred EEEccCCCchhHHHHHHhCC
Q 003841 51 AVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 51 vVvG~qssGKSSlLeal~G~ 70 (792)
|+||..|||||++|+||...
T Consensus 3 viiG~N~sGKS~il~ai~~~ 22 (303)
T PF13304_consen 3 VIIGPNGSGKSNILEAIYFL 22 (303)
T ss_dssp --------------------
T ss_pred cccccccccccccccccccc
Confidence 78999999999999999755
No 497
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=88.28 E-value=0.33 Score=54.41 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=23.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.++++|.++||||+||+.|+|.. +-.+|
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~--~p~~G 57 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLE--HQTSG 57 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 78999999999999999999984 44444
No 498
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.26 E-value=0.34 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.2
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++|+|..+|||||||+.|+|..
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58899999999999999999973
No 499
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=88.21 E-value=0.39 Score=50.41 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||..|+|.-
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 67899999999999999999983
No 500
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.18 E-value=0.34 Score=52.29 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..+||||+|+..|+|.-
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999984
Done!