Query 003841
Match_columns 792
No_of_seqs 305 out of 1778
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:51:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 7E-112 2E-116 1003.6 49.5 670 21-710 25-770 (772)
2 3szr_A Interferon-induced GTP- 100.0 1.1E-92 3.6E-97 833.0 48.9 545 21-706 20-607 (608)
3 3t34_A Dynamin-related protein 100.0 3.1E-47 1.1E-51 420.3 21.8 284 22-305 1-328 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 1.1E-44 3.8E-49 399.1 30.9 303 21-325 5-345 (353)
5 3ljb_A Interferon-induced GTP- 100.0 1.1E-41 3.6E-46 358.7 21.3 264 304-681 3-271 (271)
6 1jwy_B Dynamin A GTPase domain 100.0 7.4E-36 2.5E-40 321.7 24.3 274 23-297 1-315 (315)
7 2aka_B Dynamin-1; fusion prote 100.0 3.6E-33 1.2E-37 298.0 28.3 264 22-287 1-299 (299)
8 2j69_A Bacterial dynamin-like 99.5 7.8E-13 2.7E-17 157.6 23.5 164 24-196 50-246 (695)
9 3iev_A GTP-binding protein ERA 98.4 5.1E-06 1.8E-10 89.2 16.1 123 46-194 9-136 (308)
10 2qpt_A EH domain-containing pr 98.3 6E-07 2.1E-11 104.1 8.3 40 46-85 64-105 (550)
11 3pqc_A Probable GTP-binding pr 98.3 1.3E-05 4.6E-10 78.0 15.8 125 44-195 20-148 (195)
12 4dhe_A Probable GTP-binding pr 98.3 2.7E-06 9.2E-11 85.6 10.7 128 45-195 27-159 (223)
13 1wf3_A GTP-binding protein; GT 98.3 5.7E-06 2E-10 88.7 13.3 124 46-195 6-132 (301)
14 3lxx_A GTPase IMAP family memb 98.2 4.5E-06 1.6E-10 85.6 10.7 61 45-108 27-89 (239)
15 3t5d_A Septin-7; GTP-binding p 98.2 4.1E-06 1.4E-10 88.1 10.6 138 48-195 9-159 (274)
16 1ega_A Protein (GTP-binding pr 98.2 1.6E-06 5.4E-11 92.9 6.7 124 45-194 6-130 (301)
17 2dyk_A GTP-binding protein; GT 98.2 3.1E-06 1.1E-10 79.9 7.9 120 47-195 1-123 (161)
18 1mky_A Probable GTP-binding pr 98.2 3.1E-06 1.1E-10 95.4 8.8 121 47-194 1-124 (439)
19 1svi_A GTP-binding protein YSX 98.1 1E-05 3.4E-10 79.3 11.1 126 45-195 21-149 (195)
20 1h65_A Chloroplast outer envel 98.1 1.5E-05 5E-10 83.7 12.9 61 45-108 37-98 (270)
21 2qu8_A Putative nucleolar GTP- 98.1 8.2E-06 2.8E-10 82.9 10.6 60 46-108 28-87 (228)
22 2hjg_A GTP-binding protein ENG 98.1 1.3E-05 4.5E-10 90.1 13.2 146 22-195 149-301 (436)
23 2lkc_A Translation initiation 98.1 2.3E-05 7.8E-10 75.3 12.9 118 44-195 5-122 (178)
24 3iby_A Ferrous iron transport 98.1 1.1E-05 3.9E-10 84.3 11.3 120 47-194 1-124 (256)
25 2ged_A SR-beta, signal recogni 98.1 5.7E-06 1.9E-10 81.1 8.3 54 20-73 21-74 (193)
26 4dcu_A GTP-binding protein ENG 98.1 4.4E-06 1.5E-10 94.6 8.2 126 44-195 20-146 (456)
27 4dcu_A GTP-binding protein ENG 98.1 1.5E-05 5.2E-10 90.1 12.7 146 22-195 169-321 (456)
28 2hjg_A GTP-binding protein ENG 98.1 6.9E-06 2.4E-10 92.4 9.3 123 47-195 3-126 (436)
29 2cxx_A Probable GTP-binding pr 98.0 3.7E-05 1.3E-09 74.6 12.8 54 47-107 1-54 (190)
30 3gee_A MNME, tRNA modification 98.0 2.2E-05 7.7E-10 89.4 12.8 122 48-196 234-359 (476)
31 2qtf_A Protein HFLX, GTP-bindi 98.0 2.3E-05 8E-10 86.2 12.4 126 46-196 178-308 (364)
32 1z0f_A RAB14, member RAS oncog 98.0 9.6E-06 3.3E-10 77.8 8.2 118 46-194 14-134 (179)
33 2g6b_A RAS-related protein RAB 98.0 1.9E-05 6.4E-10 76.1 10.1 118 47-194 10-130 (180)
34 1zbd_A Rabphilin-3A; G protein 98.0 3.4E-05 1.2E-09 76.2 12.1 118 46-194 7-127 (203)
35 3tw8_B RAS-related protein RAB 98.0 1.9E-05 6.5E-10 75.8 9.8 36 46-81 8-43 (181)
36 2il1_A RAB12; G-protein, GDP, 98.0 3.2E-05 1.1E-09 76.1 11.6 117 47-194 26-145 (192)
37 1xzp_A Probable tRNA modificat 98.0 1.7E-05 5.7E-10 90.5 10.6 58 48-108 244-302 (482)
38 3tkl_A RAS-related protein RAB 98.0 1.3E-05 4.4E-10 78.5 8.1 119 46-195 15-136 (196)
39 3clv_A RAB5 protein, putative; 98.0 1.8E-05 6.1E-10 77.3 8.8 28 46-73 6-33 (208)
40 4djt_A GTP-binding nuclear pro 97.9 1.4E-05 4.9E-10 80.0 8.1 117 47-195 11-132 (218)
41 2gj8_A MNME, tRNA modification 97.9 6.8E-05 2.3E-09 72.7 12.6 123 48-194 5-129 (172)
42 1mky_A Probable GTP-binding pr 97.9 5.6E-05 1.9E-09 85.0 13.5 83 22-107 150-238 (439)
43 2xtp_A GTPase IMAP family memb 97.9 7.4E-05 2.5E-09 77.4 12.8 61 45-108 20-82 (260)
44 3i8s_A Ferrous iron transport 97.9 3.2E-05 1.1E-09 81.5 10.2 59 47-108 3-61 (274)
45 1z0j_A RAB-22, RAS-related pro 97.9 1.8E-05 6.2E-10 75.1 7.4 115 47-194 6-125 (170)
46 2f7s_A C25KG, RAS-related prot 97.9 0.0001 3.6E-09 73.5 13.3 27 46-72 24-50 (217)
47 2y8e_A RAB-protein 6, GH09086P 97.9 1.4E-05 4.8E-10 76.6 6.5 117 47-194 14-133 (179)
48 2fg5_A RAB-22B, RAS-related pr 97.9 1.8E-05 6.3E-10 77.8 7.5 116 46-194 22-142 (192)
49 2yc2_C IFT27, small RAB-relate 97.9 7.3E-05 2.5E-09 73.6 11.8 25 48-72 21-47 (208)
50 3cph_A RAS-related protein SEC 97.9 4.6E-05 1.6E-09 75.6 10.3 119 45-194 18-139 (213)
51 2fn4_A P23, RAS-related protei 97.9 2.7E-05 9.1E-10 74.8 8.0 117 46-194 8-128 (181)
52 3lxw_A GTPase IMAP family memb 97.9 5.1E-05 1.8E-09 78.6 10.7 59 47-108 21-81 (247)
53 3geh_A MNME, tRNA modification 97.9 2.2E-05 7.4E-10 89.2 8.4 38 48-85 225-263 (462)
54 1z08_A RAS-related protein RAB 97.9 1.6E-05 5.6E-10 75.6 6.3 29 47-75 6-34 (170)
55 2wji_A Ferrous iron transport 97.8 7.3E-05 2.5E-09 71.7 10.9 58 48-108 4-61 (165)
56 2oil_A CATX-8, RAS-related pro 97.8 3.6E-05 1.2E-09 75.4 8.8 30 46-75 24-53 (193)
57 1kao_A RAP2A; GTP-binding prot 97.8 6.8E-05 2.3E-09 70.6 10.4 27 48-74 4-30 (167)
58 2bme_A RAB4A, RAS-related prot 97.8 2.5E-05 8.5E-10 75.7 7.4 117 47-194 10-129 (186)
59 3bc1_A RAS-related protein RAB 97.8 3.7E-05 1.2E-09 74.6 8.5 27 47-73 11-37 (195)
60 2a9k_A RAS-related protein RAL 97.8 8.3E-05 2.8E-09 71.7 10.6 118 45-194 16-137 (187)
61 1u8z_A RAS-related protein RAL 97.8 6.9E-05 2.3E-09 70.7 9.8 27 47-73 4-30 (168)
62 2e87_A Hypothetical protein PH 97.8 0.00022 7.4E-09 78.0 15.1 127 45-195 165-295 (357)
63 3def_A T7I23.11 protein; chlor 97.8 6.4E-05 2.2E-09 78.4 10.4 60 46-108 35-95 (262)
64 2efe_B Small GTP-binding prote 97.8 5.9E-05 2E-09 72.6 9.4 117 46-195 11-132 (181)
65 1wms_A RAB-9, RAB9, RAS-relate 97.8 6.9E-05 2.4E-09 71.8 9.6 29 46-74 6-34 (177)
66 1g16_A RAS-related protein SEC 97.8 5.6E-05 1.9E-09 71.7 8.8 116 48-194 4-122 (170)
67 2nzj_A GTP-binding protein REM 97.8 3.4E-05 1.2E-09 73.7 7.1 28 47-74 4-31 (175)
68 3dz8_A RAS-related protein RAB 97.8 2.5E-05 8.4E-10 76.7 6.1 29 46-74 22-50 (191)
69 2gf9_A RAS-related protein RAB 97.8 6.4E-05 2.2E-09 73.4 9.0 29 47-75 22-50 (189)
70 2wjg_A FEOB, ferrous iron tran 97.8 0.00012 4E-09 71.1 10.8 61 45-108 5-65 (188)
71 2bcg_Y Protein YP2, GTP-bindin 97.8 9.1E-05 3.1E-09 73.4 10.2 27 47-73 8-34 (206)
72 3a1s_A Iron(II) transport prot 97.8 0.0001 3.5E-09 77.0 11.0 120 47-194 5-124 (258)
73 1ky3_A GTP-binding protein YPT 97.7 7.1E-05 2.4E-09 71.8 9.0 30 46-75 7-36 (182)
74 2o52_A RAS-related protein RAB 97.7 4E-05 1.4E-09 76.0 7.4 32 46-77 24-55 (200)
75 1ek0_A Protein (GTP-binding pr 97.7 0.00012 4E-09 69.3 10.3 29 48-76 4-32 (170)
76 2a5j_A RAS-related protein RAB 97.7 7.2E-05 2.5E-09 73.3 9.1 117 47-194 21-140 (191)
77 2bov_A RAla, RAS-related prote 97.7 0.00012 4.1E-09 72.1 10.6 119 44-194 11-133 (206)
78 3q72_A GTP-binding protein RAD 97.7 5.4E-05 1.9E-09 71.7 7.8 30 47-76 2-31 (166)
79 2ew1_A RAS-related protein RAB 97.7 0.00012 4E-09 73.2 10.6 117 47-194 26-145 (201)
80 2ce2_X GTPase HRAS; signaling 97.7 0.00011 3.6E-09 69.0 9.4 27 48-74 4-30 (166)
81 1z2a_A RAS-related protein RAB 97.7 1.8E-05 6.3E-10 75.0 4.0 28 47-74 5-32 (168)
82 1vg8_A RAS-related protein RAB 97.7 6.2E-05 2.1E-09 74.3 7.8 36 46-81 7-42 (207)
83 3oes_A GTPase rhebl1; small GT 97.7 7.1E-05 2.4E-09 74.1 8.2 29 45-73 22-50 (201)
84 1z06_A RAS-related protein RAB 97.7 0.00011 3.7E-09 71.8 9.5 31 46-76 19-49 (189)
85 2erx_A GTP-binding protein DI- 97.7 8.3E-05 2.8E-09 70.5 8.4 26 48-73 4-29 (172)
86 3con_A GTPase NRAS; structural 97.7 0.00016 5.5E-09 70.4 10.6 29 46-74 20-48 (190)
87 2qag_B Septin-6, protein NEDD5 97.7 9E-05 3.1E-09 83.0 9.8 136 45-195 40-191 (427)
88 3k53_A Ferrous iron transport 97.7 0.00014 4.9E-09 76.1 10.7 59 46-108 2-61 (271)
89 3q85_A GTP-binding protein REM 97.7 8.5E-05 2.9E-09 70.6 8.2 31 47-77 2-32 (169)
90 2qag_C Septin-7; cell cycle, c 97.7 0.00028 9.4E-09 79.1 13.4 138 49-195 33-182 (418)
91 3b1v_A Ferrous iron uptake tra 97.7 0.00014 4.7E-09 76.8 10.3 58 47-108 3-60 (272)
92 1c1y_A RAS-related protein RAP 97.7 0.00019 6.4E-09 67.8 10.4 26 48-73 4-29 (167)
93 3kkq_A RAS-related protein M-R 97.7 0.00015 5.1E-09 70.0 9.7 29 45-73 16-44 (183)
94 3qq5_A Small GTP-binding prote 97.6 3.3E-05 1.1E-09 86.6 5.6 125 45-197 32-157 (423)
95 4bas_A ADP-ribosylation factor 97.6 0.00012 4.1E-09 71.6 8.7 31 44-74 14-44 (199)
96 2p5s_A RAS and EF-hand domain 97.6 0.00012 4.1E-09 72.3 8.6 116 46-194 27-147 (199)
97 4dsu_A GTPase KRAS, isoform 2B 97.6 0.00033 1.1E-08 67.6 11.7 28 48-75 5-32 (189)
98 2hup_A RAS-related protein RAB 97.6 0.00016 5.6E-09 71.7 9.6 118 46-194 28-148 (201)
99 1r2q_A RAS-related protein RAB 97.6 0.00018 6.2E-09 68.0 9.4 27 48-74 7-33 (170)
100 3t5g_A GTP-binding protein RHE 97.6 0.00013 4.6E-09 70.2 8.6 27 47-73 6-32 (181)
101 1lnz_A SPO0B-associated GTP-bi 97.6 8.5E-05 2.9E-09 81.0 7.5 41 47-87 158-198 (342)
102 3l0i_B RAS-related protein RAB 97.6 3.8E-05 1.3E-09 75.9 4.4 118 46-194 32-152 (199)
103 2qag_A Septin-2, protein NEDD5 97.6 0.00013 4.3E-09 80.2 8.6 136 48-195 38-189 (361)
104 2h57_A ADP-ribosylation factor 97.5 0.00024 8.3E-09 69.3 9.3 26 46-71 20-45 (190)
105 1moz_A ARL1, ADP-ribosylation 97.5 0.00021 7.1E-09 68.9 8.6 27 46-72 17-43 (183)
106 2gf0_A GTP-binding protein DI- 97.5 0.00029 9.9E-09 68.9 9.7 27 46-72 7-33 (199)
107 1x3s_A RAS-related protein RAB 97.5 0.00071 2.4E-08 65.7 12.5 31 47-77 15-45 (195)
108 2fh5_B SR-beta, signal recogni 97.5 0.00031 1.1E-08 69.9 9.9 30 46-75 6-35 (214)
109 2fu5_C RAS-related protein RAB 97.5 4.5E-05 1.5E-09 73.8 3.5 26 47-72 8-33 (183)
110 1r8s_A ADP-ribosylation factor 97.5 0.00062 2.1E-08 64.2 11.3 25 49-73 2-26 (164)
111 2gco_A H9, RHO-related GTP-bin 97.5 0.00011 3.6E-09 72.9 5.8 26 48-73 26-51 (201)
112 2hxs_A RAB-26, RAS-related pro 97.5 0.00015 5.1E-09 69.5 6.7 28 46-73 5-32 (178)
113 1ksh_A ARF-like protein 2; sma 97.5 0.00084 2.9E-08 65.0 12.1 26 46-71 17-42 (186)
114 1zd9_A ADP-ribosylation factor 97.4 0.00068 2.3E-08 66.1 11.4 26 48-73 23-48 (188)
115 3izq_1 HBS1P, elongation facto 97.4 0.00018 6.1E-09 84.4 8.2 27 45-71 165-191 (611)
116 3cpj_B GTP-binding protein YPT 97.4 0.00021 7E-09 72.1 7.4 118 46-194 12-132 (223)
117 2fv8_A H6, RHO-related GTP-bin 97.4 9.1E-05 3.1E-09 73.7 4.6 26 48-73 26-51 (207)
118 2atx_A Small GTP binding prote 97.4 0.0007 2.4E-08 66.1 10.8 115 48-195 19-137 (194)
119 3cbq_A GTP-binding protein REM 97.4 0.00065 2.2E-08 67.1 10.6 27 46-72 22-48 (195)
120 1upt_A ARL1, ADP-ribosylation 97.4 0.00072 2.5E-08 64.1 10.4 26 47-72 7-32 (171)
121 1f6b_A SAR1; gtpases, N-termin 97.4 0.00051 1.7E-08 68.0 9.5 28 45-72 23-50 (198)
122 3p26_A Elongation factor 1 alp 97.4 0.00015 5E-09 82.7 6.3 26 45-70 31-56 (483)
123 3dpu_A RAB family protein; roc 97.4 0.0011 3.9E-08 76.2 13.7 29 44-72 38-66 (535)
124 1nrj_B SR-beta, signal recogni 97.3 0.0013 4.6E-08 65.4 12.2 30 44-73 9-38 (218)
125 3j2k_7 ERF3, eukaryotic polype 97.3 0.00016 5.5E-09 81.4 5.9 26 46-71 16-41 (439)
126 1mh1_A RAC1; GTP-binding, GTPa 97.3 0.00061 2.1E-08 65.5 9.3 115 48-195 6-124 (186)
127 2atv_A RERG, RAS-like estrogen 97.3 0.00039 1.3E-08 68.3 7.9 29 46-74 27-55 (196)
128 1zj6_A ADP-ribosylation factor 97.3 0.0008 2.7E-08 65.4 9.9 28 46-73 15-42 (187)
129 3llu_A RAS-related GTP-binding 97.3 0.0011 3.6E-08 65.3 10.8 26 45-70 18-43 (196)
130 3izy_P Translation initiation 97.3 0.00011 3.8E-09 84.8 4.0 115 46-195 3-119 (537)
131 3tr5_A RF-3, peptide chain rel 97.3 0.00022 7.6E-09 82.2 6.3 25 46-70 12-36 (528)
132 2q3h_A RAS homolog gene family 97.3 0.0011 3.6E-08 65.2 10.4 118 45-195 18-139 (201)
133 2h17_A ADP-ribosylation factor 97.3 0.00068 2.3E-08 65.6 8.8 26 47-72 21-46 (181)
134 2x77_A ADP-ribosylation factor 97.3 0.00096 3.3E-08 64.8 9.8 28 46-73 21-48 (189)
135 2iwr_A Centaurin gamma 1; ANK 97.2 0.00078 2.7E-08 64.6 8.8 28 47-74 7-34 (178)
136 3c5c_A RAS-like protein 12; GD 97.2 0.00087 3E-08 65.5 8.9 27 47-73 21-47 (187)
137 2b6h_A ADP-ribosylation factor 97.2 0.0012 4.1E-08 64.9 9.6 28 46-73 28-55 (192)
138 3sop_A Neuronal-specific septi 97.2 0.0019 6.4E-08 68.0 11.6 24 49-72 4-27 (270)
139 1m2o_B GTP-binding protein SAR 97.1 0.0025 8.6E-08 62.4 11.6 28 45-72 21-48 (190)
140 3reg_A RHO-like small GTPase; 97.1 0.00084 2.9E-08 65.6 8.0 27 46-72 22-48 (194)
141 3bwd_D RAC-like GTP-binding pr 97.1 0.00035 1.2E-08 67.1 5.1 27 46-72 7-33 (182)
142 2h5e_A Peptide chain release f 97.1 0.00075 2.6E-08 77.8 8.6 25 46-70 12-36 (529)
143 2j1l_A RHO-related GTP-binding 97.1 0.0006 2E-08 68.3 6.9 26 47-72 34-59 (214)
144 1fzq_A ADP-ribosylation factor 97.1 0.0024 8.1E-08 62.0 10.9 28 45-72 14-41 (181)
145 3mca_A HBS1, elongation factor 97.1 0.00011 3.7E-09 85.9 1.3 23 48-70 178-200 (592)
146 3ihw_A Centg3; RAS, centaurin, 97.1 0.00065 2.2E-08 66.4 6.6 29 45-73 18-46 (184)
147 4gzl_A RAS-related C3 botulinu 97.1 0.00037 1.3E-08 69.3 4.7 29 45-73 28-56 (204)
148 2j0v_A RAC-like GTP-binding pr 97.1 0.0011 3.8E-08 65.7 8.2 117 46-195 8-128 (212)
149 3o47_A ADP-ribosylation factor 97.0 0.00088 3E-08 72.4 7.8 113 49-195 167-281 (329)
150 2g3y_A GTP-binding protein GEM 97.0 0.0017 5.7E-08 65.7 9.4 26 46-71 36-61 (211)
151 3r7w_A Gtpase1, GTP-binding pr 97.0 0.0016 5.4E-08 69.6 9.6 57 48-107 4-62 (307)
152 1zun_B Sulfate adenylate trans 97.0 0.001 3.4E-08 74.7 8.4 26 46-71 23-48 (434)
153 1pui_A ENGB, probable GTP-bind 97.0 0.00094 3.2E-08 66.0 7.3 26 47-72 26-51 (210)
154 4a9a_A Ribosome-interacting GT 97.0 0.00041 1.4E-08 76.6 4.9 58 47-107 72-129 (376)
155 2f9l_A RAB11B, member RAS onco 97.0 0.0014 4.7E-08 64.7 8.0 27 47-73 5-31 (199)
156 1f60_A Elongation factor EEF1A 97.0 0.0008 2.7E-08 76.1 7.1 25 46-70 6-30 (458)
157 3q3j_B RHO-related GTP-binding 97.0 0.0022 7.6E-08 64.2 9.6 29 45-73 25-53 (214)
158 1m7b_A RND3/RHOE small GTP-bin 97.0 0.0016 5.5E-08 63.1 8.2 26 47-72 7-32 (184)
159 3gj0_A GTP-binding nuclear pro 97.0 0.00043 1.5E-08 69.4 4.1 28 45-72 13-40 (221)
160 2xex_A Elongation factor G; GT 96.9 0.00049 1.7E-08 81.9 4.8 24 46-69 9-32 (693)
161 1gwn_A RHO-related GTP-binding 96.9 0.0018 6.1E-08 64.6 8.2 26 47-72 28-53 (205)
162 1g7s_A Translation initiation 96.9 0.00036 1.2E-08 81.6 3.4 27 46-72 4-30 (594)
163 2qnr_A Septin-2, protein NEDD5 96.9 0.0028 9.6E-08 67.6 10.0 27 49-75 20-46 (301)
164 3lvq_E ARF-GAP with SH3 domain 96.9 0.0039 1.3E-07 70.8 11.9 113 47-195 322-438 (497)
165 3sjy_A Translation initiation 96.8 0.00077 2.6E-08 74.9 5.3 27 46-72 7-33 (403)
166 2c78_A Elongation factor TU-A; 96.8 0.0019 6.4E-08 71.8 8.4 25 46-70 10-34 (405)
167 3t1o_A Gliding protein MGLA; G 96.8 0.008 2.7E-07 58.1 11.8 24 47-70 14-37 (198)
168 3h2y_A GTPase family protein; 96.8 0.0034 1.2E-07 69.0 9.7 55 48-108 161-222 (368)
169 2cjw_A GTP-binding protein GEM 96.8 0.0022 7.4E-08 63.2 7.4 24 47-70 6-29 (192)
170 1wb1_A Translation elongation 96.7 0.0023 7.9E-08 72.8 8.4 26 46-71 18-43 (482)
171 4dkx_A RAS-related protein RAB 96.7 0.004 1.4E-07 63.1 8.9 25 49-73 15-39 (216)
172 1zo1_I IF2, translation initia 96.7 0.00081 2.8E-08 76.9 3.9 113 46-194 3-117 (501)
173 2rdo_7 EF-G, elongation factor 96.6 0.0039 1.3E-07 74.2 9.7 24 46-69 9-32 (704)
174 3th5_A RAS-related C3 botulinu 95.7 0.0003 1E-08 69.6 0.0 27 46-72 29-55 (204)
175 2elf_A Protein translation elo 96.6 0.0016 5.3E-08 71.8 5.7 22 47-68 21-42 (370)
176 2ywe_A GTP-binding protein LEP 96.6 0.0018 6E-08 75.7 6.0 24 47-70 6-29 (600)
177 3dm5_A SRP54, signal recogniti 96.6 0.0044 1.5E-07 69.7 8.8 39 167-205 226-264 (443)
178 1dar_A EF-G, elongation factor 96.5 0.0017 5.6E-08 77.3 5.5 23 46-68 11-33 (691)
179 1kk1_A EIF2gamma; initiation o 96.5 0.0039 1.3E-07 69.2 8.0 25 46-70 9-33 (410)
180 2wkq_A NPH1-1, RAS-related C3 96.5 0.0053 1.8E-07 65.0 8.5 117 46-195 154-274 (332)
181 3cb4_D GTP-binding protein LEP 96.4 0.0019 6.5E-08 75.4 5.0 24 47-70 4-27 (599)
182 1jny_A EF-1-alpha, elongation 96.3 0.0018 6E-08 72.8 3.9 25 46-70 5-29 (435)
183 1puj_A YLQF, conserved hypothe 96.3 0.0047 1.6E-07 65.3 6.8 58 47-110 120-178 (282)
184 1s0u_A EIF-2-gamma, translatio 96.2 0.006 2E-07 67.8 7.5 25 46-70 7-31 (408)
185 2dy1_A Elongation factor G; tr 96.2 0.0072 2.5E-07 71.5 8.6 26 46-71 8-33 (665)
186 1d2e_A Elongation factor TU (E 96.1 0.0041 1.4E-07 68.9 5.2 22 49-70 5-26 (397)
187 1r5b_A Eukaryotic peptide chai 96.0 0.0017 5.7E-08 73.7 1.2 24 46-69 42-65 (467)
188 2yhs_A FTSY, cell division pro 95.9 0.025 8.5E-07 64.4 10.4 38 167-204 425-462 (503)
189 3p32_A Probable GTPase RV1496/ 95.8 0.085 2.9E-06 57.3 13.8 25 46-70 78-102 (355)
190 1n0u_A EF-2, elongation factor 95.8 0.0056 1.9E-07 74.4 4.7 25 46-70 18-42 (842)
191 1f5n_A Interferon-induced guan 95.7 0.0091 3.1E-07 69.5 5.9 64 45-108 36-102 (592)
192 3avx_A Elongation factor TS, e 95.4 0.0085 2.9E-07 74.3 4.5 26 45-70 294-319 (1289)
193 3ec1_A YQEH GTPase; atnos1, at 95.3 0.018 6.1E-07 63.2 6.3 55 48-108 163-223 (369)
194 2j37_W Signal recognition part 95.2 0.063 2.2E-06 61.3 10.7 30 48-77 102-137 (504)
195 3j25_A Tetracycline resistance 95.2 0.0056 1.9E-07 72.1 1.8 38 157-195 97-134 (638)
196 1wxq_A GTP-binding protein; st 95.2 0.0086 2.9E-07 66.5 3.2 38 49-87 2-40 (397)
197 1oix_A RAS-related protein RAB 95.0 0.019 6.7E-07 56.1 4.9 27 47-73 29-55 (191)
198 1jal_A YCHF protein; nucleotid 95.0 0.012 4.1E-07 64.6 3.6 37 48-84 3-39 (363)
199 3vqt_A RF-3, peptide chain rel 94.9 0.013 4.4E-07 67.8 3.8 115 48-195 32-167 (548)
200 2zej_A Dardarin, leucine-rich 94.8 0.013 4.6E-07 56.7 3.2 23 48-70 3-25 (184)
201 1ni3_A YCHF GTPase, YCHF GTP-b 94.6 0.022 7.4E-07 63.1 4.6 40 47-86 20-60 (392)
202 3cnl_A YLQF, putative uncharac 94.5 0.022 7.4E-07 59.5 4.0 29 48-76 100-128 (262)
203 4fn5_A EF-G 1, elongation fact 94.5 0.019 6.5E-07 68.4 4.0 114 48-195 14-152 (709)
204 2ohf_A Protein OLA1, GTP-bindi 94.3 0.023 7.9E-07 62.9 4.0 39 47-85 22-60 (396)
205 2px0_A Flagellar biosynthesis 94.3 0.088 3E-06 55.9 8.3 22 49-70 107-128 (296)
206 1tq4_A IIGP1, interferon-induc 94.3 0.033 1.1E-06 62.1 5.1 25 47-71 69-93 (413)
207 3kl4_A SRP54, signal recogniti 94.2 0.019 6.6E-07 64.3 2.9 22 49-70 99-120 (433)
208 2v3c_C SRP54, signal recogniti 94.1 0.08 2.7E-06 59.3 7.7 22 49-70 101-122 (432)
209 3e70_C DPA, signal recognition 94.0 0.047 1.6E-06 58.9 5.5 38 167-204 255-292 (328)
210 1vma_A Cell division protein F 94.0 0.039 1.3E-06 59.1 4.7 56 167-225 236-291 (306)
211 2dby_A GTP-binding protein; GD 93.5 0.022 7.6E-07 62.5 1.8 38 48-85 2-39 (368)
212 2www_A Methylmalonic aciduria 93.1 0.034 1.2E-06 60.4 2.5 26 45-70 72-97 (349)
213 1mv5_A LMRA, multidrug resista 92.5 0.061 2.1E-06 55.3 3.2 23 49-71 30-52 (243)
214 3ney_A 55 kDa erythrocyte memb 92.5 0.047 1.6E-06 54.7 2.3 25 46-70 18-42 (197)
215 4g1u_C Hemin import ATP-bindin 92.4 0.058 2E-06 56.4 3.0 23 49-71 39-61 (266)
216 1s96_A Guanylate kinase, GMP k 92.1 0.054 1.8E-06 54.9 2.2 24 48-71 17-40 (219)
217 1ex7_A Guanylate kinase; subst 92.0 0.057 2E-06 53.5 2.2 34 50-83 4-39 (186)
218 2xxa_A Signal recognition part 92.0 0.18 6.2E-06 56.5 6.5 20 49-68 102-121 (433)
219 1znw_A Guanylate kinase, GMP k 91.9 0.063 2.1E-06 53.4 2.4 22 49-70 22-43 (207)
220 1g6h_A High-affinity branched- 91.9 0.056 1.9E-06 56.1 2.1 23 49-71 35-57 (257)
221 3c5h_A Glucocorticoid receptor 91.8 0.091 3.1E-06 54.1 3.6 25 45-69 17-50 (255)
222 1lvg_A Guanylate kinase, GMP k 91.8 0.066 2.3E-06 53.0 2.4 22 49-70 6-27 (198)
223 2hf9_A Probable hydrogenase ni 91.7 0.067 2.3E-06 53.3 2.4 26 46-71 37-62 (226)
224 3tif_A Uncharacterized ABC tra 91.7 0.082 2.8E-06 54.1 3.1 23 49-71 33-55 (235)
225 2wsm_A Hydrogenase expression/ 91.7 0.068 2.3E-06 53.0 2.4 25 46-70 29-53 (221)
226 2pze_A Cystic fibrosis transme 91.7 0.061 2.1E-06 54.8 2.1 23 49-71 36-58 (229)
227 3gfo_A Cobalt import ATP-bindi 91.7 0.061 2.1E-06 56.6 2.1 23 49-71 36-58 (275)
228 1kgd_A CASK, peripheral plasma 91.6 0.07 2.4E-06 51.8 2.4 23 48-70 6-28 (180)
229 1u0l_A Probable GTPase ENGC; p 91.6 0.09 3.1E-06 55.8 3.4 25 48-72 170-194 (301)
230 1udx_A The GTP-binding protein 91.5 0.14 4.8E-06 57.1 4.9 40 47-86 157-196 (416)
231 2pcj_A ABC transporter, lipopr 91.5 0.087 3E-06 53.5 2.9 23 49-71 32-54 (224)
232 1ji0_A ABC transporter; ATP bi 91.4 0.068 2.3E-06 54.9 2.1 23 49-71 34-56 (240)
233 2d2e_A SUFC protein; ABC-ATPas 91.4 0.072 2.5E-06 55.1 2.2 22 49-70 31-52 (250)
234 3q5d_A Atlastin-1; G protein, 91.3 0.12 4.2E-06 58.0 4.2 25 46-70 66-90 (447)
235 3c8u_A Fructokinase; YP_612366 91.2 0.081 2.8E-06 52.6 2.3 22 49-70 24-45 (208)
236 1vpl_A ABC transporter, ATP-bi 91.2 0.074 2.5E-06 55.3 2.1 23 49-71 43-65 (256)
237 2rcn_A Probable GTPase ENGC; Y 91.1 0.11 3.9E-06 56.7 3.6 23 49-71 217-239 (358)
238 2nq2_C Hypothetical ABC transp 91.0 0.076 2.6E-06 55.0 2.1 30 49-80 33-62 (253)
239 3tau_A Guanylate kinase, GMP k 91.0 0.11 3.7E-06 51.8 3.1 23 48-70 9-31 (208)
240 2gza_A Type IV secretion syste 91.0 0.096 3.3E-06 57.2 2.9 29 49-79 177-205 (361)
241 3kta_A Chromosome segregation 91.0 0.087 3E-06 50.8 2.3 23 48-70 27-49 (182)
242 3tr0_A Guanylate kinase, GMP k 91.0 0.088 3E-06 51.6 2.4 22 49-70 9-30 (205)
243 1sgw_A Putative ABC transporte 91.0 0.11 3.7E-06 52.6 3.0 23 49-71 37-59 (214)
244 2cbz_A Multidrug resistance-as 91.0 0.11 3.7E-06 53.3 3.1 23 49-71 33-55 (237)
245 2ihy_A ABC transporter, ATP-bi 90.9 0.08 2.7E-06 55.8 2.1 23 49-71 49-71 (279)
246 2pt7_A CAG-ALFA; ATPase, prote 90.9 0.089 3E-06 56.7 2.4 29 49-79 173-201 (330)
247 2zu0_C Probable ATP-dependent 90.9 0.086 2.9E-06 55.1 2.2 23 49-71 48-70 (267)
248 1b0u_A Histidine permease; ABC 90.7 0.11 3.9E-06 54.0 3.0 23 49-71 34-56 (262)
249 2onk_A Molybdate/tungstate ABC 90.7 0.12 4E-06 53.3 3.1 24 48-71 25-48 (240)
250 3a00_A Guanylate kinase, GMP k 90.7 0.098 3.3E-06 51.0 2.4 22 49-70 3-24 (186)
251 1zp6_A Hypothetical protein AT 90.7 0.12 4.1E-06 50.0 3.0 22 49-70 11-32 (191)
252 1ye8_A Protein THEP1, hypothet 90.7 0.11 3.6E-06 50.9 2.6 22 49-70 2-23 (178)
253 2ff7_A Alpha-hemolysin translo 90.7 0.12 4.1E-06 53.4 3.1 23 49-71 37-59 (247)
254 1z6g_A Guanylate kinase; struc 90.6 0.098 3.4E-06 52.6 2.4 22 49-70 25-46 (218)
255 1t9h_A YLOQ, probable GTPase E 90.6 0.059 2E-06 57.7 0.7 24 48-71 174-197 (307)
256 1zu4_A FTSY; GTPase, signal re 90.5 2.9 0.0001 44.6 14.0 22 49-70 107-128 (320)
257 2qi9_C Vitamin B12 import ATP- 90.4 0.13 4.4E-06 53.2 3.0 23 49-71 28-50 (249)
258 1np6_A Molybdopterin-guanine d 90.4 0.13 4.4E-06 50.3 2.9 25 46-70 5-29 (174)
259 2olj_A Amino acid ABC transpor 90.2 0.13 4.6E-06 53.6 3.0 23 49-71 52-74 (263)
260 2ixe_A Antigen peptide transpo 90.2 0.14 4.6E-06 53.7 3.1 23 49-71 47-69 (271)
261 2ghi_A Transport protein; mult 90.1 0.14 4.8E-06 53.2 3.1 23 49-71 48-70 (260)
262 2yz2_A Putative ABC transporte 89.9 0.15 5E-06 53.2 3.1 23 49-71 35-57 (266)
263 3asz_A Uridine kinase; cytidin 89.6 0.13 4.5E-06 50.8 2.3 22 49-70 8-29 (211)
264 2qor_A Guanylate kinase; phosp 89.5 0.11 3.8E-06 51.4 1.6 25 46-70 11-35 (204)
265 2f1r_A Molybdopterin-guanine d 89.4 0.093 3.2E-06 51.2 0.9 23 48-70 3-25 (171)
266 2oap_1 GSPE-2, type II secreti 89.3 0.14 4.8E-06 58.6 2.5 30 50-81 263-292 (511)
267 1htw_A HI0065; nucleotide-bind 89.2 0.16 5.4E-06 48.8 2.4 23 49-71 35-57 (158)
268 3b85_A Phosphate starvation-in 89.1 0.15 5E-06 51.3 2.2 30 49-81 24-53 (208)
269 2pjz_A Hypothetical protein ST 89.0 0.19 6.4E-06 52.5 3.0 23 49-71 32-54 (263)
270 2ffh_A Protein (FFH); SRP54, s 88.9 0.43 1.5E-05 53.2 6.0 22 49-70 100-121 (425)
271 2j41_A Guanylate kinase; GMP, 88.7 0.18 6.1E-06 49.3 2.5 22 49-70 8-29 (207)
272 2bbs_A Cystic fibrosis transme 88.6 0.2 7E-06 53.0 3.0 23 49-71 66-88 (290)
273 3nh6_A ATP-binding cassette SU 88.5 0.16 5.4E-06 54.3 2.1 23 49-71 82-104 (306)
274 2qm8_A GTPase/ATPase; G protei 88.3 0.18 6.2E-06 54.4 2.4 25 46-70 54-78 (337)
275 1kag_A SKI, shikimate kinase I 88.2 0.2 6.7E-06 47.6 2.4 22 49-70 6-27 (173)
276 2eyu_A Twitching motility prot 88.2 0.19 6.4E-06 52.3 2.4 22 49-70 27-48 (261)
277 4a74_A DNA repair and recombin 88.2 0.29 9.8E-06 48.5 3.7 30 49-78 27-56 (231)
278 1f2t_A RAD50 ABC-ATPase; DNA d 88.2 0.23 8E-06 47.0 2.8 21 48-68 24-44 (149)
279 4gp7_A Metallophosphoesterase; 88.2 0.23 7.9E-06 47.8 2.9 21 49-69 11-31 (171)
280 2v9p_A Replication protein E1; 88.2 0.19 6.4E-06 53.7 2.4 23 48-70 127-149 (305)
281 2bbw_A Adenylate kinase 4, AK4 87.9 0.25 8.5E-06 50.3 3.0 25 48-72 28-55 (246)
282 2yv5_A YJEQ protein; hydrolase 87.6 0.3 1E-05 51.8 3.6 22 48-70 166-187 (302)
283 1z47_A CYSA, putative ABC-tran 87.4 0.27 9.2E-06 53.6 3.1 23 49-71 43-65 (355)
284 4eun_A Thermoresistant glucoki 87.4 0.23 8E-06 48.8 2.4 23 48-70 30-52 (200)
285 3aez_A Pantothenate kinase; tr 87.4 0.22 7.6E-06 53.2 2.4 26 45-70 87-113 (312)
286 3lnc_A Guanylate kinase, GMP k 87.3 0.19 6.4E-06 50.6 1.6 22 49-70 29-51 (231)
287 3fvq_A Fe(3+) IONS import ATP- 87.2 0.27 9.4E-06 53.6 3.0 23 49-71 32-54 (359)
288 2it1_A 362AA long hypothetical 87.1 0.29 9.8E-06 53.6 3.1 23 49-71 31-53 (362)
289 2yyz_A Sugar ABC transporter, 87.0 0.29 1E-05 53.4 3.1 23 49-71 31-53 (359)
290 1g29_1 MALK, maltose transport 86.9 0.29 1E-05 53.6 3.1 23 49-71 31-53 (372)
291 2bdt_A BH3686; alpha-beta prot 86.9 0.26 9E-06 47.7 2.4 21 49-69 4-24 (189)
292 3tui_C Methionine import ATP-b 86.8 0.3 1E-05 53.4 3.1 23 49-71 56-78 (366)
293 3rlf_A Maltose/maltodextrin im 86.5 0.32 1.1E-05 53.6 3.1 23 49-71 31-53 (381)
294 1v43_A Sugar-binding transport 86.5 0.32 1.1E-05 53.4 3.1 23 49-71 39-61 (372)
295 2i3b_A HCR-ntpase, human cance 86.4 0.28 9.6E-06 48.5 2.3 27 49-78 3-29 (189)
296 1knq_A Gluconate kinase; ALFA/ 86.2 0.3 1E-05 46.6 2.4 23 48-70 9-31 (175)
297 1lw7_A Transcriptional regulat 86.1 0.27 9.2E-06 53.4 2.2 24 48-71 171-194 (365)
298 3d31_A Sulfate/molybdate ABC t 86.1 0.26 8.9E-06 53.6 2.1 23 49-71 28-50 (348)
299 3ec2_A DNA replication protein 86.0 0.45 1.5E-05 45.7 3.5 44 24-70 18-61 (180)
300 1rz3_A Hypothetical protein rb 85.9 0.51 1.7E-05 46.5 3.9 22 49-70 24-45 (201)
301 2jeo_A Uridine-cytidine kinase 85.8 0.31 1.1E-05 49.7 2.4 22 49-70 27-48 (245)
302 3uie_A Adenylyl-sulfate kinase 85.8 0.32 1.1E-05 47.8 2.4 23 48-70 26-48 (200)
303 1xjc_A MOBB protein homolog; s 85.6 0.4 1.4E-05 46.7 2.9 24 47-70 4-27 (169)
304 3jvv_A Twitching mobility prot 85.5 0.32 1.1E-05 53.0 2.4 22 49-70 125-146 (356)
305 3gd7_A Fusion complex of cysti 85.3 0.39 1.3E-05 53.0 3.0 24 48-71 48-71 (390)
306 2vp4_A Deoxynucleoside kinase; 85.1 0.35 1.2E-05 48.8 2.3 22 49-70 22-43 (230)
307 4e22_A Cytidylate kinase; P-lo 84.9 0.37 1.3E-05 49.5 2.5 26 47-72 27-55 (252)
308 1yqt_A RNAse L inhibitor; ATP- 84.9 0.5 1.7E-05 54.3 3.8 31 49-81 314-344 (538)
309 3kb2_A SPBC2 prophage-derived 84.9 0.44 1.5E-05 44.8 2.8 23 48-70 2-24 (173)
310 2npi_A Protein CLP1; CLP1-PCF1 84.9 0.36 1.2E-05 54.5 2.5 26 46-71 137-162 (460)
311 1oxx_K GLCV, glucose, ABC tran 84.7 0.27 9.3E-06 53.5 1.4 23 49-71 33-55 (353)
312 1sq5_A Pantothenate kinase; P- 84.7 0.36 1.2E-05 51.2 2.3 22 49-70 82-103 (308)
313 1cke_A CK, MSSA, protein (cyti 84.6 0.43 1.5E-05 47.4 2.7 23 48-70 6-28 (227)
314 3qf7_A RAD50; ABC-ATPase, ATPa 84.6 0.41 1.4E-05 52.2 2.7 23 46-68 22-44 (365)
315 3euj_A Chromosome partition pr 84.4 0.37 1.3E-05 54.7 2.3 24 48-71 30-53 (483)
316 3ozx_A RNAse L inhibitor; ATP 84.4 0.47 1.6E-05 54.6 3.2 29 49-79 296-324 (538)
317 2p67_A LAO/AO transport system 84.0 0.41 1.4E-05 51.6 2.4 25 46-70 55-79 (341)
318 3qks_A DNA double-strand break 84.0 0.5 1.7E-05 47.0 2.8 21 48-68 24-44 (203)
319 1yqt_A RNAse L inhibitor; ATP- 83.9 0.56 1.9E-05 53.9 3.5 23 49-71 49-71 (538)
320 3bk7_A ABC transporter ATP-bin 83.6 0.61 2.1E-05 54.5 3.8 30 49-80 384-413 (607)
321 2if2_A Dephospho-COA kinase; a 83.6 0.45 1.5E-05 46.6 2.3 21 49-69 3-23 (204)
322 1rj9_A FTSY, signal recognitio 83.6 0.44 1.5E-05 50.7 2.4 22 49-70 104-125 (304)
323 3lw7_A Adenylate kinase relate 83.4 0.62 2.1E-05 43.6 3.1 20 48-67 2-21 (179)
324 2qt1_A Nicotinamide riboside k 83.4 0.87 3E-05 44.7 4.4 31 40-70 13-44 (207)
325 2kjq_A DNAA-related protein; s 83.1 0.45 1.5E-05 44.9 2.0 25 46-70 35-59 (149)
326 3b5x_A Lipid A export ATP-bind 83.0 0.53 1.8E-05 54.6 2.9 23 49-71 371-393 (582)
327 1jjv_A Dephospho-COA kinase; P 83.0 0.6 2E-05 45.8 3.0 22 49-70 4-25 (206)
328 1odf_A YGR205W, hypothetical 3 83.0 1 3.5E-05 47.5 4.9 24 47-70 31-54 (290)
329 2ewv_A Twitching motility prot 83.0 0.47 1.6E-05 51.9 2.4 22 49-70 138-159 (372)
330 2ehv_A Hypothetical protein PH 82.6 0.52 1.8E-05 47.3 2.4 22 49-70 32-53 (251)
331 2x8a_A Nuclear valosin-contain 82.6 0.77 2.6E-05 47.8 3.7 34 34-70 34-67 (274)
332 3ozx_A RNAse L inhibitor; ATP 82.4 0.8 2.7E-05 52.6 4.1 23 49-71 27-49 (538)
333 1nij_A Hypothetical protein YJ 82.4 0.44 1.5E-05 50.8 1.8 26 46-71 3-28 (318)
334 1p9r_A General secretion pathw 82.4 0.51 1.7E-05 52.6 2.4 22 49-70 169-190 (418)
335 3t61_A Gluconokinase; PSI-biol 82.4 0.55 1.9E-05 46.0 2.4 23 48-70 19-41 (202)
336 3j16_B RLI1P; ribosome recycli 82.0 0.84 2.9E-05 53.3 4.1 23 49-71 105-127 (608)
337 3bk7_A ABC transporter ATP-bin 82.0 0.72 2.5E-05 53.8 3.5 23 49-71 119-141 (607)
338 3tqc_A Pantothenate kinase; bi 81.9 0.55 1.9E-05 50.4 2.4 22 49-70 94-115 (321)
339 3r7w_B Gtpase2, GTP-binding pr 81.5 0.74 2.5E-05 49.6 3.1 26 49-75 1-26 (331)
340 3qkt_A DNA double-strand break 81.2 0.65 2.2E-05 49.9 2.6 21 48-68 24-44 (339)
341 2jaq_A Deoxyguanosine kinase; 81.1 0.84 2.9E-05 44.1 3.2 22 49-70 2-23 (205)
342 3b9q_A Chloroplast SRP recepto 80.9 0.63 2.2E-05 49.4 2.4 22 49-70 102-123 (302)
343 2yl4_A ATP-binding cassette SU 80.8 0.68 2.3E-05 53.8 2.8 23 49-71 372-394 (595)
344 3b60_A Lipid A export ATP-bind 80.7 0.73 2.5E-05 53.4 3.0 23 49-71 371-393 (582)
345 1e69_A Chromosome segregation 80.5 0.69 2.4E-05 49.2 2.5 23 48-70 25-47 (322)
346 3vaa_A Shikimate kinase, SK; s 80.4 0.7 2.4E-05 45.3 2.4 23 48-70 26-48 (199)
347 3qf4_B Uncharacterized ABC tra 80.3 0.74 2.5E-05 53.5 2.9 23 49-71 383-405 (598)
348 2o5v_A DNA replication and rep 80.3 0.67 2.3E-05 50.5 2.4 23 48-70 27-49 (359)
349 1ly1_A Polynucleotide kinase; 80.2 0.85 2.9E-05 43.1 2.8 21 49-69 4-24 (181)
350 1ixz_A ATP-dependent metallopr 80.2 1.1 3.7E-05 45.5 3.7 22 49-70 51-72 (254)
351 1kht_A Adenylate kinase; phosp 80.1 0.86 2.9E-05 43.6 2.8 21 49-69 5-25 (192)
352 1nks_A Adenylate kinase; therm 79.8 0.86 2.9E-05 43.6 2.7 22 49-70 3-24 (194)
353 1w1w_A Structural maintenance 79.7 0.71 2.4E-05 51.2 2.4 24 48-71 27-50 (430)
354 4aby_A DNA repair protein RECN 79.6 0.32 1.1E-05 53.4 -0.5 23 48-70 61-83 (415)
355 1qhx_A CPT, protein (chloramph 79.6 0.91 3.1E-05 43.1 2.8 22 49-70 5-26 (178)
356 1gtv_A TMK, thymidylate kinase 79.5 0.52 1.8E-05 46.2 1.1 22 49-70 2-23 (214)
357 3qf4_A ABC transporter, ATP-bi 79.1 0.78 2.7E-05 53.3 2.5 23 49-71 371-393 (587)
358 3auy_A DNA double-strand break 79.1 0.86 3E-05 49.5 2.7 21 48-68 26-46 (371)
359 4a82_A Cystic fibrosis transme 78.9 0.69 2.4E-05 53.5 2.0 23 49-71 369-391 (578)
360 3j16_B RLI1P; ribosome recycli 78.8 1 3.6E-05 52.5 3.5 22 50-71 381-402 (608)
361 2pez_A Bifunctional 3'-phospho 78.8 0.87 3E-05 43.6 2.4 22 49-70 7-28 (179)
362 2v54_A DTMP kinase, thymidylat 78.3 1 3.6E-05 43.7 2.8 23 48-70 5-27 (204)
363 2rhm_A Putative kinase; P-loop 77.8 1.1 3.7E-05 43.1 2.7 21 49-69 7-27 (193)
364 2w0m_A SSO2452; RECA, SSPF, un 77.7 0.96 3.3E-05 44.5 2.4 22 49-70 25-46 (235)
365 2og2_A Putative signal recogni 77.6 0.91 3.1E-05 49.5 2.4 22 49-70 159-180 (359)
366 2z0h_A DTMP kinase, thymidylat 77.6 1.1 3.9E-05 43.0 2.8 22 49-70 2-23 (197)
367 1iy2_A ATP-dependent metallopr 77.5 1.4 4.9E-05 45.4 3.8 22 49-70 75-96 (278)
368 1qhl_A Protein (cell division 77.5 0.23 7.7E-06 50.8 -2.4 22 50-71 30-51 (227)
369 2plr_A DTMP kinase, probable t 77.4 1.1 3.9E-05 43.5 2.8 23 48-70 5-27 (213)
370 3trf_A Shikimate kinase, SK; a 77.4 1.3 4.5E-05 42.3 3.2 22 47-68 5-26 (185)
371 3cm0_A Adenylate kinase; ATP-b 77.1 1.2 4.1E-05 42.6 2.8 21 49-69 6-26 (186)
372 1via_A Shikimate kinase; struc 76.8 1.3 4.4E-05 42.2 2.9 23 48-70 5-27 (175)
373 1y63_A LMAJ004144AAA protein; 76.5 1.4 4.9E-05 42.5 3.2 24 47-70 10-33 (184)
374 1cr0_A DNA primase/helicase; R 76.3 1 3.5E-05 46.9 2.3 22 49-70 37-58 (296)
375 3iij_A Coilin-interacting nucl 76.3 1.3 4.6E-05 42.2 2.9 23 46-68 10-32 (180)
376 2yvu_A Probable adenylyl-sulfa 76.3 1.1 3.8E-05 43.1 2.4 23 48-70 14-36 (186)
377 1nn5_A Similar to deoxythymidy 75.7 1.3 4.5E-05 43.2 2.7 21 49-69 11-31 (215)
378 3fb4_A Adenylate kinase; psych 75.6 1.5 5E-05 43.2 3.0 21 49-69 2-22 (216)
379 2wwf_A Thymidilate kinase, put 75.3 1.4 4.7E-05 43.1 2.7 22 48-69 11-32 (212)
380 2iyv_A Shikimate kinase, SK; t 75.2 1.4 4.9E-05 42.1 2.8 21 48-68 3-23 (184)
381 2c95_A Adenylate kinase 1; tra 74.9 1.6 5.5E-05 41.9 3.1 23 47-69 9-31 (196)
382 2pbr_A DTMP kinase, thymidylat 74.9 1.5 5.1E-05 42.0 2.8 21 49-69 2-22 (195)
383 3dl0_A Adenylate kinase; phosp 74.5 1.6 5.5E-05 42.9 3.0 21 49-69 2-22 (216)
384 1vht_A Dephospho-COA kinase; s 74.4 1.5 5.1E-05 43.3 2.8 21 49-69 6-26 (218)
385 1e6c_A Shikimate kinase; phosp 73.9 1.7 5.8E-05 40.9 2.9 22 48-69 3-24 (173)
386 4ido_A Atlastin-1; GTPase, GTP 73.8 2.1 7.3E-05 48.0 4.1 23 46-68 66-88 (457)
387 1tev_A UMP-CMP kinase; ploop, 73.4 1.7 5.8E-05 41.5 2.8 21 49-69 5-25 (196)
388 3ake_A Cytidylate kinase; CMP 73.2 1.6 5.6E-05 42.3 2.7 22 48-69 3-24 (208)
389 2pt5_A Shikimate kinase, SK; a 73.2 1.8 6E-05 40.6 2.8 21 49-69 2-22 (168)
390 1fnn_A CDC6P, cell division co 73.2 2.5 8.4E-05 45.2 4.3 43 28-70 25-67 (389)
391 3nwj_A ATSK2; P loop, shikimat 73.0 1.5 5.1E-05 45.2 2.4 24 47-70 48-71 (250)
392 1uf9_A TT1252 protein; P-loop, 73.0 1.7 5.8E-05 42.0 2.7 23 48-70 9-31 (203)
393 2chg_A Replication factor C sm 72.6 3.6 0.00012 39.5 5.0 38 27-70 24-61 (226)
394 2bwj_A Adenylate kinase 5; pho 72.5 2 6.8E-05 41.4 3.1 23 48-70 13-35 (199)
395 1yrb_A ATP(GTP)binding protein 72.5 2.4 8.2E-05 42.9 3.8 32 45-76 12-48 (262)
396 1qf9_A UMP/CMP kinase, protein 72.4 1.8 6.2E-05 41.2 2.7 22 48-69 7-28 (194)
397 4f4c_A Multidrug resistance pr 71.8 1.4 5E-05 55.9 2.4 22 49-70 1107-1128(1321)
398 1m7g_A Adenylylsulfate kinase; 71.7 1.7 5.7E-05 42.9 2.4 23 48-70 26-48 (211)
399 2iw3_A Elongation factor 3A; a 71.4 1.3 4.6E-05 54.3 1.9 23 49-71 701-723 (986)
400 2dpy_A FLII, flagellum-specifi 71.4 1.6 5.6E-05 48.7 2.5 24 48-71 158-181 (438)
401 1n0w_A DNA repair protein RAD5 71.3 1.7 5.8E-05 43.2 2.4 22 49-70 26-47 (243)
402 1ukz_A Uridylate kinase; trans 71.3 2 6.9E-05 41.7 2.8 22 48-69 16-37 (203)
403 1svm_A Large T antigen; AAA+ f 71.3 1.6 5.6E-05 47.8 2.4 22 49-70 171-192 (377)
404 2obl_A ESCN; ATPase, hydrolase 71.2 1.7 5.9E-05 47.0 2.5 24 48-71 72-95 (347)
405 2cvh_A DNA repair and recombin 71.1 1.8 6.1E-05 42.4 2.4 21 49-69 22-42 (220)
406 2vli_A Antibiotic resistance p 71.0 1.6 5.6E-05 41.4 2.1 21 48-68 6-26 (183)
407 1zak_A Adenylate kinase; ATP:A 70.9 2 6.9E-05 42.6 2.7 22 48-69 6-27 (222)
408 1zd8_A GTP:AMP phosphotransfer 70.8 2.2 7.7E-05 42.4 3.1 22 48-69 8-29 (227)
409 1gvn_B Zeta; postsegregational 70.7 2 6.8E-05 45.0 2.8 45 24-70 11-56 (287)
410 2cdn_A Adenylate kinase; phosp 70.5 2.2 7.4E-05 41.6 2.8 21 49-69 22-42 (201)
411 1e4v_A Adenylate kinase; trans 70.3 2.3 7.7E-05 42.0 3.0 21 49-69 2-22 (214)
412 1jbk_A CLPB protein; beta barr 70.0 2.3 7.8E-05 39.9 2.8 24 47-70 43-66 (195)
413 4f4c_A Multidrug resistance pr 69.8 2.1 7.1E-05 54.5 3.2 22 49-70 446-467 (1321)
414 1in4_A RUVB, holliday junction 69.6 2.1 7.2E-05 45.6 2.8 25 46-70 50-74 (334)
415 2qen_A Walker-type ATPase; unk 68.5 6.6 0.00023 40.9 6.3 41 20-70 14-54 (350)
416 1sxj_E Activator 1 40 kDa subu 68.4 2.1 7.2E-05 45.4 2.4 26 45-70 34-59 (354)
417 3a4m_A L-seryl-tRNA(SEC) kinas 68.2 2.5 8.5E-05 43.4 2.8 22 48-69 5-26 (260)
418 2ze6_A Isopentenyl transferase 68.1 2.2 7.4E-05 43.7 2.4 22 49-70 3-24 (253)
419 3r20_A Cytidylate kinase; stru 67.7 2.1 7.2E-05 43.7 2.1 22 48-69 10-31 (233)
420 2xb4_A Adenylate kinase; ATP-b 67.5 2.7 9.1E-05 42.0 2.8 21 49-69 2-22 (223)
421 3g5u_A MCG1178, multidrug resi 67.4 2.4 8.3E-05 53.7 3.0 22 49-70 418-439 (1284)
422 4eaq_A DTMP kinase, thymidylat 67.4 2.7 9.2E-05 42.5 2.8 22 49-70 28-49 (229)
423 1q3t_A Cytidylate kinase; nucl 66.9 2.4 8.3E-05 42.5 2.4 24 46-69 15-38 (236)
424 1aky_A Adenylate kinase; ATP:A 66.7 3.2 0.00011 41.0 3.2 22 48-69 5-26 (220)
425 3cr8_A Sulfate adenylyltranfer 66.6 1.7 5.9E-05 50.1 1.3 22 49-70 371-392 (552)
426 1nlf_A Regulatory protein REPA 66.6 2.3 8E-05 43.8 2.3 22 49-70 32-53 (279)
427 2p5t_B PEZT; postsegregational 66.5 2.3 7.7E-05 43.4 2.1 27 44-70 28-55 (253)
428 1sxj_C Activator 1 40 kDa subu 66.5 5 0.00017 42.6 4.9 37 28-70 33-69 (340)
429 3syl_A Protein CBBX; photosynt 66.4 5.9 0.0002 41.0 5.4 33 38-70 58-90 (309)
430 1zuh_A Shikimate kinase; alpha 65.6 3.2 0.00011 39.0 2.8 23 46-68 6-28 (168)
431 1tue_A Replication protein E1; 65.1 6.2 0.00021 39.7 4.9 40 23-70 39-81 (212)
432 3exa_A TRNA delta(2)-isopenten 65.1 3.9 0.00013 43.8 3.6 23 48-70 4-26 (322)
433 3n70_A Transport activator; si 64.9 8.7 0.0003 35.3 5.7 39 28-70 9-47 (145)
434 2iw3_A Elongation factor 3A; a 64.8 2.5 8.7E-05 51.9 2.4 22 49-70 463-484 (986)
435 1uj2_A Uridine-cytidine kinase 64.8 3.2 0.00011 42.2 2.8 22 48-69 23-44 (252)
436 4tmk_A Protein (thymidylate ki 64.2 1.5 5E-05 44.1 0.1 22 49-70 5-26 (213)
437 3tlx_A Adenylate kinase 2; str 64.0 3.6 0.00012 41.7 3.0 22 48-69 30-51 (243)
438 3ux8_A Excinuclease ABC, A sub 63.8 2.3 8E-05 49.9 1.8 20 49-68 350-369 (670)
439 2f6r_A COA synthase, bifunctio 63.8 3.3 0.00011 43.1 2.7 20 49-68 77-96 (281)
440 3be4_A Adenylate kinase; malar 63.7 3.4 0.00012 40.9 2.7 22 48-69 6-27 (217)
441 2grj_A Dephospho-COA kinase; T 63.6 3.5 0.00012 40.5 2.8 25 45-69 10-34 (192)
442 3tmk_A Thymidylate kinase; pho 63.6 1.9 6.4E-05 43.5 0.8 23 48-70 6-28 (216)
443 2w58_A DNAI, primosome compone 63.5 9.8 0.00033 36.7 6.0 45 24-70 33-77 (202)
444 1ak2_A Adenylate kinase isoenz 63.3 3.6 0.00012 41.2 2.8 23 48-70 17-39 (233)
445 1njg_A DNA polymerase III subu 63.1 9 0.00031 37.0 5.7 37 28-70 31-68 (250)
446 3g5u_A MCG1178, multidrug resi 63.1 3.4 0.00012 52.4 3.2 23 49-71 1061-1083(1284)
447 1lv7_A FTSH; alpha/beta domain 62.9 3.1 0.00011 42.1 2.4 22 49-70 47-68 (257)
448 2ga8_A Hypothetical 39.9 kDa p 62.7 7.6 0.00026 42.2 5.4 25 46-70 23-47 (359)
449 1ltq_A Polynucleotide kinase; 62.4 3.7 0.00013 42.6 2.8 21 49-69 4-24 (301)
450 2p65_A Hypothetical protein PF 61.8 3.7 0.00013 38.4 2.5 24 47-70 43-66 (187)
451 3bos_A Putative DNA replicatio 61.1 4.6 0.00016 39.6 3.1 39 26-70 37-75 (242)
452 2fna_A Conserved hypothetical 61.0 5.9 0.0002 41.4 4.2 23 48-70 31-53 (357)
453 2qz4_A Paraplegin; AAA+, SPG7, 60.8 9.7 0.00033 38.1 5.6 23 48-70 40-62 (262)
454 3h4m_A Proteasome-activating n 60.2 6.4 0.00022 40.2 4.2 32 36-70 43-74 (285)
455 3foz_A TRNA delta(2)-isopenten 59.5 4.6 0.00016 43.1 2.9 23 48-70 11-33 (316)
456 3m6a_A ATP-dependent protease 59.4 6.4 0.00022 45.1 4.3 28 43-70 104-131 (543)
457 2ius_A DNA translocase FTSK; n 59.2 4.2 0.00015 46.3 2.8 23 47-69 167-189 (512)
458 4ad8_A DNA repair protein RECN 59.1 1.9 6.5E-05 49.0 -0.1 23 48-70 61-83 (517)
459 1a7j_A Phosphoribulokinase; tr 59.1 3.4 0.00011 43.4 1.8 22 48-69 6-27 (290)
460 2ocp_A DGK, deoxyguanosine kin 58.3 4.8 0.00016 40.4 2.7 22 49-70 4-25 (241)
461 3a8t_A Adenylate isopentenyltr 58.1 7.6 0.00026 41.9 4.4 23 48-70 41-63 (339)
462 1p5z_B DCK, deoxycytidine kina 58.1 3.7 0.00013 41.9 1.9 24 47-70 24-47 (263)
463 3co5_A Putative two-component 57.5 8.1 0.00028 35.5 4.0 21 50-70 30-50 (143)
464 2qmh_A HPR kinase/phosphorylas 56.6 6 0.0002 39.6 3.0 25 46-70 33-57 (205)
465 1j8m_F SRP54, signal recogniti 55.4 4.8 0.00016 42.4 2.2 22 49-70 100-121 (297)
466 4ag6_A VIRB4 ATPase, type IV s 55.0 5.1 0.00017 43.5 2.4 26 45-70 33-58 (392)
467 2dhr_A FTSH; AAA+ protein, hex 54.8 11 0.00037 42.8 5.1 22 49-70 66-87 (499)
468 3zvl_A Bifunctional polynucleo 54.6 5.8 0.0002 43.7 2.8 23 48-70 259-281 (416)
469 3t15_A Ribulose bisphosphate c 54.5 11 0.00036 39.4 4.7 27 44-70 32-59 (293)
470 1ls1_A Signal recognition part 54.3 5.2 0.00018 42.0 2.3 22 49-70 100-121 (295)
471 3d3q_A TRNA delta(2)-isopenten 53.9 6.2 0.00021 42.6 2.8 22 49-70 9-30 (340)
472 2h92_A Cytidylate kinase; ross 53.7 6.6 0.00023 38.5 2.8 21 49-69 5-25 (219)
473 2qby_A CDC6 homolog 1, cell di 53.6 5.3 0.00018 42.2 2.3 24 47-70 45-68 (386)
474 4edh_A DTMP kinase, thymidylat 53.6 6.7 0.00023 39.2 2.8 22 49-70 8-29 (213)
475 2dr3_A UPF0273 protein PH0284; 53.5 6.4 0.00022 38.9 2.7 21 49-69 25-45 (247)
476 2ce7_A Cell division protein F 53.4 12 0.0004 42.2 5.2 22 49-70 51-72 (476)
477 1ewq_A DNA mismatch repair pro 52.9 5.4 0.00018 47.7 2.4 24 48-71 577-600 (765)
478 1pzn_A RAD51, DNA repair and r 52.8 5.6 0.00019 42.8 2.3 23 49-71 133-155 (349)
479 2r62_A Cell division protease 52.5 10 0.00035 38.3 4.2 21 50-70 47-67 (268)
480 1bif_A 6-phosphofructo-2-kinas 51.8 6.7 0.00023 43.9 2.8 22 49-70 41-62 (469)
481 1wb9_A DNA mismatch repair pro 51.8 5.8 0.0002 47.7 2.4 23 49-71 609-631 (800)
482 3lv8_A DTMP kinase, thymidylat 51.7 7.1 0.00024 39.7 2.7 23 48-70 28-50 (236)
483 3v9p_A DTMP kinase, thymidylat 51.3 6.4 0.00022 39.9 2.3 24 47-70 25-48 (227)
484 1tf7_A KAIC; homohexamer, hexa 51.3 5.9 0.0002 45.0 2.3 22 49-70 41-64 (525)
485 3tqf_A HPR(Ser) kinase; transf 51.1 14 0.00046 36.3 4.5 23 49-71 18-40 (181)
486 1ko7_A HPR kinase/phosphatase; 50.8 6.6 0.00023 41.9 2.4 24 48-71 145-168 (314)
487 1c9k_A COBU, adenosylcobinamid 50.7 7.8 0.00027 37.9 2.7 21 50-70 2-22 (180)
488 1l8q_A Chromosomal replication 50.7 15 0.0005 38.5 5.1 45 22-70 16-60 (324)
489 3ld9_A DTMP kinase, thymidylat 50.6 7.9 0.00027 39.1 2.8 22 49-70 23-44 (223)
490 3b9p_A CG5977-PA, isoform A; A 49.8 6.9 0.00024 40.3 2.4 24 47-70 54-77 (297)
491 3ux8_A Excinuclease ABC, A sub 49.6 6.5 0.00022 46.1 2.3 16 49-64 46-61 (670)
492 3szr_A Interferon-induced GTP- 49.5 1.4E+02 0.005 34.3 13.7 10 258-267 315-324 (608)
493 1tf7_A KAIC; homohexamer, hexa 49.5 6.6 0.00022 44.6 2.3 23 48-70 282-304 (525)
494 3cf0_A Transitional endoplasmi 48.7 13 0.00045 38.7 4.3 22 49-70 51-72 (301)
495 1iqp_A RFCS; clamp loader, ext 48.5 20 0.00068 36.9 5.7 37 28-70 33-69 (327)
496 2iut_A DNA translocase FTSK; n 48.4 8.4 0.00029 44.5 2.9 24 47-70 214-237 (574)
497 3sr0_A Adenylate kinase; phosp 48.1 9.8 0.00034 37.8 3.0 22 49-70 2-23 (206)
498 2qgz_A Helicase loader, putati 47.4 22 0.00075 37.3 5.8 41 27-70 135-175 (308)
499 3pxg_A Negative regulator of g 47.3 16 0.00054 40.9 4.9 37 28-70 188-224 (468)
500 1sxj_D Activator 1 41 kDa subu 47.1 8.9 0.00031 40.2 2.7 25 46-70 57-81 (353)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=6.9e-112 Score=1003.62 Aligned_cols=670 Identities=39% Similarity=0.618 Sum_probs=540.8
Q ss_pred CCcchHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCccccee
Q 003841 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGE 100 (792)
Q Consensus 21 ~~~~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~ 100 (792)
-.+++||+||+|+|.|+++|++..+++|+|||||+||+|||||||+|+|.+|||++.|+|||||+++++.+.+ .+|++
T Consensus 25 ~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~--~~~~~ 102 (772)
T 3zvr_A 25 GMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST--TEYAE 102 (772)
T ss_dssp CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECS--SCEEE
T ss_pred cHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCC--cchhh
Confidence 3489999999999999999999899999999999999999999999999999999999999999999999875 58999
Q ss_pred eccCCCccccChhHHHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecC------------------------
Q 003841 101 FLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLP------------------------ 156 (792)
Q Consensus 101 ~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLP------------------------ 156 (792)
+++.+|+.+.|+++++++|+.++++..|.+++|+.++|.++|++|++++|+|||+|
T Consensus 103 ~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~ 182 (772)
T 3zvr_A 103 FLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQ 182 (772)
T ss_dssp CSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHH
T ss_pred eeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred -----------CCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCcccccCeeEEecCChhhh
Q 003841 157 -----------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 225 (792)
Q Consensus 157 -----------V~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L~lGy~~V~nrsq~di 225 (792)
|++|+.++..++.+.+++.+++.|.++|+|+||+|+++.++...+++.++.+++++||+.|+++|+.+.
T Consensus 183 yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G 262 (772)
T 3zvr_A 183 FVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDI 262 (772)
T ss_dssp HHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEES
T ss_pred HHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEeccccc
Confidence 455677788889889999999999999999999999998887778888888899999999999999887
Q ss_pred hcccCHHHHHHHHHHhhcCCCCCCCcccccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCCCh-
Q 003841 226 MFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESK- 304 (792)
Q Consensus 226 ~~~~s~~ea~~~E~~fF~~~~~~~~l~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~~lg~~~~~~- 304 (792)
..-..+.++...|++||..+|+|..+.+++|+..|++.|++.|..||+++||.|+.+|+.++..++.+|++||++++++
T Consensus 263 ~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~~~~~~~~ 342 (772)
T 3zvr_A 263 DGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKNFRPDDP 342 (772)
T ss_dssp SSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred ccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhCCCCCCCh
Confidence 6667899999999999999999998999999999999999999999999999999999999999999999999877655
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccCCccccccccccccchHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHhhcCCCCCC
Q 003841 305 AGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSAL 384 (792)
Q Consensus 305 ~~~~~~L~~~i~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~F~~~l~~~~~~~~l~~~dI~~~I~n~~G~~~pl 384 (792)
.++..+|++++++|++.|.++|+|.+++.++.+++||+||+++|++.|...+.++++++.+++++|+++|+|++|+++++
T Consensus 343 ~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n~~G~~~~l 422 (772)
T 3zvr_A 343 ARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGL 422 (772)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHhCCCCCCCC
Confidence 45788999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 003841 385 FVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEM 464 (792)
Q Consensus 385 Fvp~~~Fe~Lvr~qI~~l~~Pal~cv~~V~~eL~~iv~~~~~~e~~rfp~L~~~i~~vv~~~L~~~~~~a~~~I~~Li~~ 464 (792)
|+|+.+||.||++||++|++||++|++.|+++|.+++++|. .+|.|||+|++++.++|.++|++++.+|+++|.+||+|
T Consensus 423 f~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~-~~l~RfP~Lr~ei~~iv~~~Lre~~~~t~~~V~~LId~ 501 (772)
T 3zvr_A 423 FTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS-EKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDI 501 (772)
T ss_dssp CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHG-GGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999995 68999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCCccchHHHHHHHHhhhhcCCCCCccccCCCCCCCCCCCcchhhhhHHHHHhhhcccccCCC--------
Q 003841 465 EMDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQG-------- 536 (792)
Q Consensus 465 E~~yInT~hpdF~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------- 536 (792)
|++||||+||||+|+++|+..+.+..++...+.. ....+..++|+...+.+.+.+++
T Consensus 502 E~ayintnHpdf~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 566 (772)
T 3zvr_A 502 ELAYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQ---------------DEILVIRKGWLTINNIGIMKGGSKEYWFVLT 566 (772)
T ss_dssp HHTCCCTTCTTCCCC------------------------------------CCEEEEEEEEESSSCCC---CCEEEEEEE
T ss_pred hcCCCCCCChhhhchHHHHHHHHHHhhcccccCC---------------ccccceeeeeeeecccccccCCCccceeecc
Confidence 9999999999999999988665543322211000 00013445555544444443322
Q ss_pred ------CCcchhhccc--CCC-----CCCCCCCC---ccccccCCCCCCCCCCCCccCCCCCCCCchhhhhHHhh-hhcC
Q 003841 537 ------VRPTVEVEKV--APA-----GNTSGSSW---GISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAM-IHLR 599 (792)
Q Consensus 537 ------~~~~~~~~~~--~~~-----~~~~~~~~---g~~~~f~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~l~ 599 (792)
|+..++.++. .+. ++...+++ ++..+|+.. .++.+ |+..+....++..++.+.+.+. .+.+
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 644 (772)
T 3zvr_A 567 AENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTE-QRNVY-KDYRQLELACETQEEVDSWKASFLRAG 644 (772)
T ss_dssp SSEEEEESSTTCCCEEEEEECTTEEEEEC-------CEEEEEEETT-SSCSB-TTBSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred ccccccccchhhhcccccccccccccchhhhccccccccccccCCc-ccccc-chhhhhhhhccccccchhhHHhhhhcc
Confidence 1111122221 111 11112222 344455543 33444 6665555555554443333211 3445
Q ss_pred CCCcc---------------CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003841 600 EPPTI---------------LRPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKK 664 (792)
Q Consensus 600 ~~p~~---------------l~~~~~~s~~e~~ei~~ir~Lv~SYF~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~ 664 (792)
.+|+. ...+...++++.+||++||+||+|||+||+|+|+|+|||||||||||++|++||+||+++
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~q~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ 724 (772)
T 3zvr_A 645 VYPERVGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLAN 724 (772)
T ss_dssp CCBC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHH
T ss_pred cCCccccccccccccCCccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55533 333334677999999999999999999999999999999999999999999999999999
Q ss_pred HhchhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Q 003841 665 LYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQAFRTLDELPLEAD 710 (792)
Q Consensus 665 LY~~~~~~eLL~E~~~Ia~kR~~l~~~l~~LkqA~~iL~ev~~~~~ 710 (792)
||+.+++++||+|++++++||++|++|+++|++|+++|++|++.+-
T Consensus 725 ly~~~~~~~lm~Es~~~~~~r~~~~~~~~~l~~a~~ii~~i~~~~~ 770 (772)
T 3zvr_A 725 LYSCGDQNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTTTV 770 (772)
T ss_dssp HHHTCCTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HhcccCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999987654
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=1.1e-92 Score=833.00 Aligned_cols=545 Identities=29% Similarity=0.438 Sum_probs=465.3
Q ss_pred CCcchHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCccccee
Q 003841 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGE 100 (792)
Q Consensus 21 ~~~~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~ 100 (792)
+++.+.++++ +.|.++.+|++..+++|+|+|||+|||||||||++|+|. ..|+++|.||++|..+.+.+......|..
T Consensus 20 ~~~~~r~ll~-~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~~~ 97 (608)
T 3szr_A 20 YEEKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWRG 97 (608)
T ss_dssp CHHHHHHHHH-HHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCCEE
T ss_pred HHHHHHHHHH-HHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCcccccee
Confidence 5566677886 567788999999999999999999999999999999999 46999999999999998887654456665
Q ss_pred eccCC--CccccChhHHHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecC----------------------
Q 003841 101 FLHLP--GKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLP---------------------- 156 (792)
Q Consensus 101 ~~~~~--g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLP---------------------- 156 (792)
.+... ...+.++..+.+.+........+.+++++.+++.+.+.+|+.|+|+|+|+|
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li 177 (608)
T 3szr_A 98 KVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLI 177 (608)
T ss_dssp EESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHH
T ss_pred EEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHH
Confidence 54322 234567778888887777777777889999999999999999999999999
Q ss_pred -------------CCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCcch--HHHHHhCCCcccccCeeEEecCC
Q 003841 157 -------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTD--ARNLLLGKVIPLRLGYVGVVNRS 221 (792)
Q Consensus 157 -------------V~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~--~~~il~~~~~~L~lGy~~V~nrs 221 (792)
|++++.|+++++++++++++|+.|.|||||+||+|+++.|+. +.+++.|+.++|++|||+|+||+
T Consensus 178 ~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~nr~ 257 (608)
T 3szr_A 178 KKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRG 257 (608)
T ss_dssp HHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCCSC
T ss_pred HHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEEecCc
Confidence 567889999999999999999999999999999999999875 56889999999999999999999
Q ss_pred hhhhhcccCHHHHHHHHHHhhcCCCCCCCccc--ccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCC
Q 003841 222 QEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGE 299 (792)
Q Consensus 222 q~di~~~~s~~ea~~~E~~fF~~~~~~~~l~~--~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~~lg~ 299 (792)
|+|++.+.++.++++.|++||.+||||+.+.+ ++||++|+++|+++|.+||+++||.|+.+|++++.+++.||++||+
T Consensus 258 ~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~ 337 (608)
T 3szr_A 258 QQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGV 337 (608)
T ss_dssp TTCTTTCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred hhhcccCCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999998864 8999999999999999999999999999999999999999999999
Q ss_pred CCCC-hhhHHHHHHHHHHHHHHHHhhhccCCccccccccccccchHHHHHHHHHHHhhhh-cCCCCCCchHHHHHHHHhh
Q 003841 300 ITES-KAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEE-VDPCEDLTDDDIRTAIQNA 377 (792)
Q Consensus 300 ~~~~-~~~~~~~L~~~i~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~F~~~l~~-~~~~~~l~~~dI~~~I~n~ 377 (792)
++++ ..+++.||++++++|++.|+++++|.+.. ...++..+++|+.+|+. |...+.. .+++....+++|+++++|+
T Consensus 338 ~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~-~~~~~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~ 415 (608)
T 3szr_A 338 DIPEDENEKMFFLIDKVNAFNQDITALMQGEETV-GEEDIRLFTRLRHEFHK-WSTIIENNFQEGHKILSRKIQKFENQA 415 (608)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHSSCCCC-CTTCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcC-CCccccHHHHHHHHHHH-HHHHhhhcccccchhHHHHHHHHHHHc
Confidence 8764 56789999999999999999999999852 33344444555555554 2222221 1223345578899999999
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHhhhhHHHH
Q 003841 378 TGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETM 457 (792)
Q Consensus 378 ~G~~~plFvp~~~Fe~Lvr~qI~~l~~Pal~cv~~V~~eL~~iv~~~~~~e~~rfp~L~~~i~~vv~~~L~~~~~~a~~~ 457 (792)
+|+++|+|+|+.+||.||++||++|++||++|++.|++++..++..++.++|.|||+|++++.+++.++++++..+|+++
T Consensus 416 ~g~~~~~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~ 495 (608)
T 3szr_A 416 AAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKL 495 (608)
T ss_dssp CSCSSSCSSCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCccchHHHHHHHHhhhhcCCCCCccccCCCCCCCCCCCcchhhhhHHHHHhhhcccccCCCC
Q 003841 458 IGHIIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGV 537 (792)
Q Consensus 458 I~~Li~~E~~yInT~hpdF~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 537 (792)
|+++|+||+.| ||+||+|. ..
T Consensus 496 i~~li~mE~~~-~~~d~~~~--------------~~-------------------------------------------- 516 (608)
T 3szr_A 496 IRLHFQMEQIV-YGAFQSSS--------------AT-------------------------------------------- 516 (608)
T ss_dssp HHHHHHHHHHC-CCC-----------------------------------------------------------------
T ss_pred HHHHHHHhhcc-ccCCcccc--------------CC--------------------------------------------
Confidence 99999999874 78877662 00
Q ss_pred CcchhhcccCCCCCCCCCCCccccccCCCCCCCCCCCCccCCCCCCCCchhhhhHHhhhhcCCCCccCCCCCCCchhHHH
Q 003841 538 RPTVEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSEQENV 617 (792)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~~~~~~s~~e~~ 617 (792)
. .+. .
T Consensus 517 ---------------~---------------------------------------------------------~~~---~ 521 (608)
T 3szr_A 517 ---------------D---------------------------------------------------------SSM---E 521 (608)
T ss_dssp --------------------------------------------------------------------------CT---T
T ss_pred ---------------C---------------------------------------------------------ccH---H
Confidence 0 000 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 003841 618 EIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQ 697 (792)
Q Consensus 618 ei~~ir~Lv~SYF~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~LY~~~~~~eLL~E~~~Ia~kR~~l~~~l~~Lkq 697 (792)
| |+.+|+|||+||+|||+|+|||+|||||||++++.||++|++.||+.+.+++||+|+++|++||++|++++++|++
T Consensus 522 e---i~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~~~~~~~~ll~E~~~~~~~R~~l~~~~~~L~~ 598 (608)
T 3szr_A 522 E---IFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDTSDKRKFLKERLARLTQ 598 (608)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcccc
Q 003841 698 AFRTLDELP 706 (792)
Q Consensus 698 A~~iL~ev~ 706 (792)
|.++|.+|+
T Consensus 599 A~~~l~~~~ 607 (608)
T 3szr_A 599 ARRRLAQFP 607 (608)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHhcC
Confidence 999999997
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=3.1e-47 Score=420.26 Aligned_cols=284 Identities=47% Similarity=0.757 Sum_probs=255.0
Q ss_pred CcchHHHHHHHHHHHHHhCCCC--------CCCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeecc
Q 003841 22 GGSVIPLVNKLQDIFAQLGSQS--------TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTK 93 (792)
Q Consensus 22 ~~~l~~~~nkL~d~~~~~G~~~--------~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~ 93 (792)
+++|||++|+||+++..+|... .+.+|+|||||+||||||||||+|+|.+|+|+++++|||+|+++++.+..
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~ 80 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID 80 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred ChhHHHHHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCC
Confidence 4789999999999999998532 26899999999999999999999999999999999999999999998875
Q ss_pred C-cccceeeccCCCccccChhHHHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecC----------------
Q 003841 94 T-DEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLP---------------- 156 (792)
Q Consensus 94 ~-~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLP---------------- 156 (792)
. ...|+.|.+.++..+.||++++.++..++....|.+.+|+.+++.++|.+|+.++|+|||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~ 160 (360)
T 3t34_A 81 DGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVK 160 (360)
T ss_dssp SCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHH
T ss_pred CcccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHH
Confidence 4 35788899989999999999999999999999999999999999999999999999999999
Q ss_pred -------------------CCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCcccccCeeEE
Q 003841 157 -------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 217 (792)
Q Consensus 157 -------------------V~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L~lGy~~V 217 (792)
|.+++.|+.+++++++++.+++.|.|||+|+||+|+++.++++.+++.+...++++||+.|
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 240 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEE
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEE
Confidence 3467788899999999999999999999999999999988888899999999999999999
Q ss_pred ecCChhhhhcccCHHHHHHHHHHhhcCCCCCCCcccccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc
Q 003841 218 VNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASY 297 (792)
Q Consensus 218 ~nrsq~di~~~~s~~ea~~~E~~fF~~~~~~~~l~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~~l 297 (792)
.|+++++++...++.+++..|.+||.+||+|+.+.+++|+.+|+++|+++|.+||+++||.|+.+|++++.+++++|++|
T Consensus 241 ~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~l 320 (360)
T 3t34_A 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRL 320 (360)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC----
T ss_pred EECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChh
Q 003841 298 GEITESKA 305 (792)
Q Consensus 298 g~~~~~~~ 305 (792)
|++++++.
T Consensus 321 g~~~~~~~ 328 (360)
T 3t34_A 321 GKPIAHGT 328 (360)
T ss_dssp --------
T ss_pred CCCCCCCH
Confidence 99988654
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=1.1e-44 Score=399.13 Aligned_cols=303 Identities=56% Similarity=0.885 Sum_probs=280.8
Q ss_pred CCcchHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCccccee
Q 003841 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGE 100 (792)
Q Consensus 21 ~~~~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~ 100 (792)
-+++|++++|+|+|.|+.+|+...+++|+|+|||++|+|||||||+|+|.+|+|+++++|||+|+++++.+.. .+|++
T Consensus 5 ~~~~l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~--~~~~~ 82 (353)
T 2x2e_A 5 SMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNAT--TEYAE 82 (353)
T ss_dssp -CCSCHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECS--SCEEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCC--cccee
Confidence 3688999999999999999998889999999999999999999999999999999999999999999999875 58999
Q ss_pred eccCCCccccChhHHHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecC------------------------
Q 003841 101 FLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLP------------------------ 156 (792)
Q Consensus 101 ~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLP------------------------ 156 (792)
|++.+|..++++++++++++.++.++.|.+.+++..++.++|++|+..+|+|||+|
T Consensus 83 ~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~ 162 (353)
T 2x2e_A 83 FLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQ 162 (353)
T ss_dssp ETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHH
T ss_pred eeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHH
Confidence 99999999999999999999999888888889999999999999999999999999
Q ss_pred -----------CCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCcccccCeeEEecCChhhh
Q 003841 157 -----------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 225 (792)
Q Consensus 157 -----------V~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L~lGy~~V~nrsq~di 225 (792)
|++++.|+++++++++++.+|+.|.|+|+|+||+|+++.++++.+++.++.+++++||+.|.++|+.+.
T Consensus 163 ~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~ 242 (353)
T 2x2e_A 163 FVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDI 242 (353)
T ss_dssp HHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHH
T ss_pred HHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccc
Confidence 456778899999989999999999999999999999988877778888988999999999999999988
Q ss_pred hcccCHHHHHHHHHHhhcCCCCCCCcccccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCCChh
Q 003841 226 MFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKA 305 (792)
Q Consensus 226 ~~~~s~~ea~~~E~~fF~~~~~~~~l~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~~lg~~~~~~~ 305 (792)
..-..+.++...|..||..++.|..+.+++|+..|++.|++.|..||++.||.++.+|++++..++.+|++||+.++++.
T Consensus 243 ~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~~~~~~~~ 322 (353)
T 2x2e_A 243 DGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDKH 322 (353)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred cccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCch
Confidence 77778889999999999999999999999999999999999999999999999999999999999999999998766553
Q ss_pred -h--HHHHHHHHHHHHHHHHhhh
Q 003841 306 -G--QGALLLNILSKYSEAFSSM 325 (792)
Q Consensus 306 -~--~~~~L~~~i~~f~~~~~~~ 325 (792)
. ++.+|++++++|++.|+..
T Consensus 323 ~~~~~~~~~~~~~~~f~~~~~~~ 345 (353)
T 2x2e_A 323 GTDSRVDEMLRMYHALKEALSII 345 (353)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHh
Confidence 2 4599999999999999754
No 5
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=358.69 Aligned_cols=264 Identities=17% Similarity=0.217 Sum_probs=194.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhccCCccccccccccccchHHHHHHHHHHHhhhhcCCCCCCc----hHHHHHHHHhhcC
Q 003841 304 KAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLT----DDDIRTAIQNATG 379 (792)
Q Consensus 304 ~~~~~~~L~~~i~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~F~~~l~~~~~~~~l~----~~dI~~~I~n~~G 379 (792)
+.++..||+..|+.|.+.+.+++.|.... ..|++||...++..|.+|...++...... .++|....++++|
T Consensus 3 ~~e~~~FLidkI~~F~~di~~l~~Gee~~-----~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rG 77 (271)
T 3ljb_A 3 ENEKMFFLIDKVNAFNQDITALMQGEETV-----GEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRG 77 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecc-----cCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccC
Confidence 45688999999999999999999999853 24788999999999999987665543322 3667777889999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003841 380 PKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIG 459 (792)
Q Consensus 380 ~~~plFvp~~~Fe~Lvr~qI~~l~~Pal~cv~~V~~eL~~iv~~~~~~e~~rfp~L~~~i~~vv~~~L~~~~~~a~~~I~ 459 (792)
+++|||+|+.+||.||++||++|++||++|++.|+++|.+++.+++..+|.+||+|++++.++|.+++++|..+|++||+
T Consensus 78 rELPgFv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~ 157 (271)
T 3ljb_A 78 RELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIR 157 (271)
T ss_dssp -----CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCccchHHHHHHHHhhhhcCCCCCccccCCCCCCCCCCCcchhhhhHHHHHhhhcccccCCCCCc
Q 003841 460 HIIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGVRP 539 (792)
Q Consensus 460 ~Li~~E~~yInT~hpdF~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 539 (792)
++|+||+ ++||+|..|.++.+.+ +. ++. ++++.
T Consensus 158 ~~~~mE~-~vytqD~~Y~~~l~~~-------r~----------~~~-~~~~~---------------------------- 190 (271)
T 3ljb_A 158 LHFQMEQ-IVYCQDQVYRGALQKV-------RE----------KEL-EEEKK---------------------------- 190 (271)
T ss_dssp HHHHHHT-SCC---------------------------------------------------------------------
T ss_pred HHHHHhc-ccccCCHHHHHHHHHH-------HH----------HHh-ccccc----------------------------
Confidence 9999999 7999999998653221 00 000 00000
Q ss_pred chhhcccCCCCCCCCCCCccccccCCCCCCCCCCCCccCCCCCCCCchhhhhHHhhhhcCCCCccCCCCCCCch-hHHHH
Q 003841 540 TVEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSE-QENVE 618 (792)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~~~~~~s~-~e~~e 618 (792)
.+ ..+.| +... . .+. ..+.|
T Consensus 191 -----~~------~~~~~-----~~~~-------~------------------------------------~~~~~~~~E 211 (271)
T 3ljb_A 191 -----KK------SWDFG-----AFQS-------S------------------------------------SATDSSMEE 211 (271)
T ss_dssp ----------------------------------------------------------------------------CHHH
T ss_pred -----cc------ccccc-----cccC-------C------------------------------------CCccchHHH
Confidence 00 00000 0000 0 000 11234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhcCCCHHH
Q 003841 619 IAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEV 681 (792)
Q Consensus 619 i~~ir~Lv~SYF~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~LY~~~~~~eLL~E~~~I 681 (792)
|..+|+|||+||+||++|+|||+||||||+.+++.||++|++.||+++.+++||+|++++
T Consensus 212 ---i~~~l~sYf~i~~~rl~d~IP~~I~~~ll~~~~~~lQ~~ml~~l~~~~~~~~LL~E~~d~ 271 (271)
T 3ljb_A 212 ---IFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDT 271 (271)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSCGGGHHHHTCCC---
T ss_pred ---HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHhcCCCCC
Confidence 567899999999999999999999999999999999999999999999999999999985
No 6
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=7.4e-36 Score=321.71 Aligned_cols=274 Identities=58% Similarity=0.974 Sum_probs=225.8
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccC------cc
Q 003841 23 GSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT------DE 96 (792)
Q Consensus 23 ~~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~------~~ 96 (792)
++||+++|+|+|+++.+|+. .+++|+|+|||.+|+|||||||+|+|.+++|++.++|||+|+++++.+.+. ..
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~-~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~ 79 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSD-PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQ 79 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSC-TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCC
T ss_pred CchHHHHHHHHHHHHHcCCC-CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchh
Confidence 57999999999999999987 899999999999999999999999999999999999999999999988632 46
Q ss_pred cceeeccCCCccccChhHHHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecC--------------------
Q 003841 97 EYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLP-------------------- 156 (792)
Q Consensus 97 ~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLP-------------------- 156 (792)
.|+.+.+.+|..+.+|+++.+++..+++++.|.+++|+.+++.++|.+|+...++|||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~ 159 (315)
T 1jwy_B 80 EWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRR 159 (315)
T ss_dssp CEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHH
T ss_pred hhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHH
Confidence 899999999999999999999999888888888889999999999999999999999999
Q ss_pred ---------------CCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCcccccCeeEEecCC
Q 003841 157 ---------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRS 221 (792)
Q Consensus 157 ---------------V~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L~lGy~~V~nrs 221 (792)
|.+++.++.+.+.+.+++.+++.+.++|+|+||+|+++.+.++.+.+.++..++++||+.|.+.+
T Consensus 160 ~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 239 (315)
T 1jwy_B 160 MVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRS 239 (315)
T ss_dssp HHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCC
T ss_pred HHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCC
Confidence 11235566666667899999999999999999999998776567777777777889999999999
Q ss_pred hhhhhcccCHHHHHHHHHHhhcCCCCCCCcccccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc
Q 003841 222 QEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASY 297 (792)
Q Consensus 222 q~di~~~~s~~ea~~~E~~fF~~~~~~~~l~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~~l 297 (792)
...++.+..+.+....+.+||..+++|..+..++|+..|...|.+.|..|+++.||.++.+|+..|.+++++|++|
T Consensus 240 a~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~l~~~ 315 (315)
T 1jwy_B 240 QEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGELSTY 315 (315)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred hhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Confidence 9988888899999999999999999999888899999999999999999999999999999999999999999876
No 7
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=3.6e-33 Score=297.98 Aligned_cols=264 Identities=61% Similarity=0.974 Sum_probs=237.8
Q ss_pred CcchHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceee
Q 003841 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEF 101 (792)
Q Consensus 22 ~~~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~ 101 (792)
+++|++++++|+|.|+.+|......+|+|+|||++|+|||||||+|+|.+|+|++.++||++|+++++.+.. .+|.++
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~--~~~~~~ 78 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST--TEYAEF 78 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECS--SCEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCC--cccchh
Confidence 468999999999999999998889999999999999999999999999999999999999999999999875 489999
Q ss_pred ccCCCccccChhHHHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecC-------------------------
Q 003841 102 LHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLP------------------------- 156 (792)
Q Consensus 102 ~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLP------------------------- 156 (792)
++..|..+++++.+...++..+.++.|.+++++...+.+++++|+...|+|||+|
T Consensus 79 ~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 158 (299)
T 2aka_B 79 LHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQF 158 (299)
T ss_dssp TTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHH
T ss_pred hhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHH
Confidence 9988988899999988888877788887789999999999999998899999998
Q ss_pred ----------CCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCcccccCeeEEecCChhhhh
Q 003841 157 ----------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 226 (792)
Q Consensus 157 ----------V~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L~lGy~~V~nrsq~di~ 226 (792)
|++++.++.+++++.+++.+++.+.++|+|+||+|+++.+.++.+++.++...+++||+.|.+.|+.+-.
T Consensus 159 ~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~ 238 (299)
T 2aka_B 159 VTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDID 238 (299)
T ss_dssp HTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTT
T ss_pred HcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhcc
Confidence 3456667888888889999999999999999999999877666677888777888899999999998765
Q ss_pred cccCHHHHHHHHHHhhcCCCCCCCcccccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003841 227 FNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSAL 287 (792)
Q Consensus 227 ~~~s~~ea~~~E~~fF~~~~~~~~l~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l 287 (792)
.-..+.++...|..||..++.|.....++|+..|.+.|.+.|..|+++.||.++++|+++|
T Consensus 239 gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~~ 299 (299)
T 2aka_B 239 GKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL 299 (299)
T ss_dssp SCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhC
Confidence 5567888888899999888899999999999999999999999999999999999998764
No 8
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.50 E-value=7.8e-13 Score=157.57 Aligned_cols=164 Identities=21% Similarity=0.242 Sum_probs=106.8
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeecc
Q 003841 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLH 103 (792)
Q Consensus 24 ~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~ 103 (792)
.+...+++|...+..+ .-+-+.|+|||.+|+|||||||+|+|.+++|++...||++|+.+..... +....+
T Consensus 50 ~l~~~l~~L~~~~~~l----~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~-----~~~t~~ 120 (695)
T 2j69_A 50 SLERDIEDITIASKNL----QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPE-----KKVTIH 120 (695)
T ss_dssp CCHHHHHHHHHHHHHH----HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSS-----CEEEEE
T ss_pred HHHHHHHHHHHHHHHh----ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCC-----CeEEEE
Confidence 4445556666655444 1245789999999999999999999999999999999999998875321 111111
Q ss_pred -CCCc--cccChhHHHHHH---HHHHHHhhcCCCCcCcCceEEEEecCCc---ceeEEeecC------------------
Q 003841 104 -LPGK--RFYDFSEIRREI---QAQTDKEAGGNKGVSDKQIRLKIFSPHV---LDITLVDLP------------------ 156 (792)
Q Consensus 104 -~~g~--~~~d~~~i~~~i---~~~~~~~~g~~~~~s~~~i~l~i~~p~~---~~LtlVDLP------------------ 156 (792)
..|. ...++..+...+ ......+.............++|+.|.- ..++|||+|
T Consensus 121 ~~~g~~~~~~~~~~i~~~~~i~~~~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~ 200 (695)
T 2j69_A 121 FNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNN 200 (695)
T ss_dssp ESSSCCCCEEEHHHHHHHSCCCHHHHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHS
T ss_pred EcCCCcccccChhhhhhhhcCCHHHHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHh
Confidence 1121 122333332211 0111222333334456677788888863 379999999
Q ss_pred ------CCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCc
Q 003841 157 ------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 196 (792)
Q Consensus 157 ------V~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~g 196 (792)
|++++..++..+...+.+.+...+.++|+|+||+|+.+..
T Consensus 201 aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 201 CHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp SSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGG
T ss_pred CCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECccccccc
Confidence 5667766666664344455666788999999999998643
No 9
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.37 E-value=5.1e-06 Score=89.18 Aligned_cols=123 Identities=20% Similarity=0.173 Sum_probs=73.5
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCccccC-hhHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYD-FSEIRREIQAQT 123 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d-~~~i~~~i~~~~ 123 (792)
+...|++||..|+|||||+|+|+|..+...+. ..+||..+...+.... .....+++.||..... ...+.+.+...+
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~--~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPN--EAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--TEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCC--CCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 34589999999999999999999998754443 3577877655544321 2334678899864211 123333333333
Q ss_pred HHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhH--HH-HHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANS--DA-LQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~--~a-l~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
...... .++ -|.+|| ++...... .. ++.++. .+.++|.|+||+|+.+
T Consensus 87 ~~~l~~---------------aD~-il~VvD-----~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 87 KQSLEE---------------ADV-ILFMID-----ATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIG 136 (308)
T ss_dssp HHHHHH---------------CSE-EEEEEE-----TTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSS
T ss_pred HHHhhc---------------CCE-EEEEEe-----CCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCC
Confidence 222211 122 355677 44333222 22 444444 4678999999999984
No 10
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.33 E-value=6e-07 Score=104.12 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=32.1
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCc--cccCCCCCcccE
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL--PRGNDICTRRPL 85 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~l--Pr~~~~~TR~P~ 85 (792)
..|.|+|||..|+|||||||+|+|.++. +.+...+|.+.+
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~ 105 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV 105 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE
Confidence 5699999999999999999999999864 456655554433
No 11
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.29 E-value=1.3e-05 Score=78.01 Aligned_cols=125 Identities=22% Similarity=0.159 Sum_probs=66.7
Q ss_pred CCCCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCccccChhHH-HHHHHH
Q 003841 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEI-RREIQA 121 (792)
Q Consensus 44 ~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i-~~~i~~ 121 (792)
.-..|+|+|+|..++|||||+++|+|..+...+. ..+|+.+..... .....+++.||......... ......
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~------~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV------NSKYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE------TTTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE------CCcEEEEECCCCccccCChhhHHHHHH
Confidence 3467899999999999999999999997433333 234554432221 11234678888543322111 111111
Q ss_pred HHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhH--HHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 122 QTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANS--DALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 122 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~--~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
.+..+......+ . .-+.++| +....... ..++..+. .+.++|.|+||.|+.+.
T Consensus 94 ~~~~~~~~~~~~-----~--------~vi~v~d-----~~~~~~~~~~~~~~~~~~---~~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 94 LVEDYFKNRWSL-----Q--------MVFLLVD-----GRIPPQDSDLMMVEWMKS---LNIPFTIVLTKMDKVKM 148 (195)
T ss_dssp HHHHHHHHCTTE-----E--------EEEEEEE-----TTSCCCHHHHHHHHHHHH---TTCCEEEEEECGGGSCG
T ss_pred HHHHHHhcCcCc-----e--------EEEEEec-----CCCCCCHHHHHHHHHHHH---cCCCEEEEEEChhcCCh
Confidence 122211111111 0 1345567 33322222 22333333 36899999999999854
No 12
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.28 E-value=2.7e-06 Score=85.55 Aligned_cols=128 Identities=17% Similarity=0.221 Sum_probs=71.9
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCcccc--CCCCCcccEEEEEeeccCcccceeeccCCCccccCh-hHHHHHHHH
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRG--NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDF-SEIRREIQA 121 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~--~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~-~~i~~~i~~ 121 (792)
-..|+|+|||..|+|||||+++|+|..++... ...+|+.+....+... ......+++.||....+. .+.++....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPA--AEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCT--TSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCC--CCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 46799999999999999999999999743232 2345776554444311 112345778888543221 111222222
Q ss_pred HHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhh--HHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 122 QTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLAN--SDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 122 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~--~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
.+..+....... ++ -+.+|| +...+.. ..+++..++ .+.++|.|+||+|+.+.
T Consensus 105 ~~~~~~~~~~~~------------d~-vi~v~d-----~~~~~~~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 105 LLSSYLQTRPQL------------CG-MILMMD-----ARRPLTELDRRMIEWFAP---TGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp HHHHHHHHCTTE------------EE-EEEEEE-----TTSCCCHHHHHHHHHHGG---GCCCEEEEEECGGGSCH
T ss_pred HHHHHHhcCcCc------------CE-EEEEEe-----CCCCCCHHHHHHHHHHHh---cCCCEEEEEeccccCCh
Confidence 222222111110 11 355677 3333322 233444443 57889999999999863
No 13
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.26 E-value=5.7e-06 Score=88.67 Aligned_cols=124 Identities=19% Similarity=0.138 Sum_probs=73.4
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~ 124 (792)
.-..|++||..|+|||||+|+|+|..+...+. ..+||..+...+... .....+++.||.... ...+.+.+...+.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~---~~~l~l~DTpG~~~~-~~~l~~~~~~~~~ 81 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG---RRQIVFVDTPGLHKP-MDALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET---TEEEEEEECCCCCCC-CSHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC---CcEEEEecCccccch-hhHHHHHHHHHHH
Confidence 34579999999999999999999998754443 357887665443321 223457889986421 1233333333222
Q ss_pred HhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhh--HHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLAN--SDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~--~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
..... .++ -|.+|| ++..+.. ..+++.+++.. .+...|.|+||+|+.+.
T Consensus 82 ~~l~~---------------ad~-il~VvD-----~~~~~~~~~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 82 EALAD---------------VNA-VVWVVD-----LRHPPTPEDELVARALKPLV-GKVPILLVGNKLDAAKY 132 (301)
T ss_dssp HHTSS---------------CSE-EEEEEE-----TTSCCCHHHHHHHHHHGGGT-TTSCEEEEEECGGGCSS
T ss_pred HHHhc---------------CCE-EEEEEE-----CCCCCChHHHHHHHHHHhhc-CCCCEEEEEECcccCCc
Confidence 22221 111 455677 3332222 22334455443 36789999999999864
No 14
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.21 E-value=4.5e-06 Score=85.62 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=41.2
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccCC--CCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~--~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
-..++|+|||..|+|||||+++|+|..+...+.. .+|+.+....+... .....+++.||..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~i~liDTpG~~ 89 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK---ETELVVVDTPGIF 89 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET---TEEEEEEECCSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC---CceEEEEECCCcc
Confidence 4568999999999999999999999987544443 57777665444332 1233577888854
No 15
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.21 E-value=4.1e-06 Score=88.14 Aligned_cols=138 Identities=14% Similarity=0.155 Sum_probs=68.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCC--------CCCcccEEEEEeeccCcccceeeccCCCccc-----cChhH
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND--------ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF-----YDFSE 114 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~--------~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~-----~d~~~ 114 (792)
-.|+|||..|+|||||+|+|+|.+..+.+.. +.+.......+.... ..-...+++.||... ..+..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGG-VQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCC-eEEEEEEEECCCccccccchhhHHH
Confidence 4799999999999999999999986655431 122211112211100 001235678888632 12455
Q ss_pred HHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 115 IRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 115 i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
+...|......+.....++.... +.-...++ -|.+|| ++...+...+ ..+.+.+.. +..+|.|+||+|++.
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~--~~d~r~~~-~l~~i~----~~~~~~~~~d-~~~l~~l~~-~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQ--MPDNRVQC-CLYFIA----PSGHGLKPLD-IEFMKRLHE-KVNIIPLIAKADTLT 158 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCS--CCCCCCCE-EEEEEC----SCCSSCCHHH-HHHHHHHTT-TSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHhhccccccc--ccCCceeE-EEEEec----CCCCCCCHHH-HHHHHHHhc-cCCEEEEEeccCCCC
Confidence 55555544333322111111110 00011222 223333 2343444333 445555555 789999999999985
Q ss_pred C
Q 003841 195 R 195 (792)
Q Consensus 195 ~ 195 (792)
.
T Consensus 159 ~ 159 (274)
T 3t5d_A 159 P 159 (274)
T ss_dssp H
T ss_pred H
Confidence 4
No 16
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.18 E-value=1.6e-06 Score=92.92 Aligned_cols=124 Identities=20% Similarity=0.249 Sum_probs=69.9
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHH
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~ 123 (792)
+.-+.|++||..|+|||||+|+|+|..+.+.+. ..+||..+.-.+... .....+++.||... +-...+...+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~---~~~i~~iDTpG~~~----~~~~~l~~~~ 78 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG---AYQAIYVDTPGLHM----EEKRAINRLM 78 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET---TEEEEEESSSSCCH----HHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC---CeeEEEEECcCCCc----cchhhHHHHH
Confidence 344689999999999999999999997644443 346776654333221 12345678888541 1111121111
Q ss_pred HHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
.... ...+. ..++ .+.++| +.. +...+ ..+++.+...+.+.|.|+||+|+..
T Consensus 79 ~~~~--~~~l~---------~~D~-vl~Vvd-----~~~-~~~~~-~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 79 NKAA--SSSIG---------DVEL-VIFVVE-----GTR-WTPDD-EMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp TCCT--TSCCC---------CEEE-EEEEEE-----TTC-CCHHH-HHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred HHHH--HHHHh---------cCCE-EEEEEe-----CCC-CCHHH-HHHHHHHHhcCCCEEEEEECcccCc
Confidence 1111 11111 1111 344567 333 44333 2344444456789999999999986
No 17
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.17 E-value=3.1e-06 Score=79.90 Aligned_cols=120 Identities=20% Similarity=0.168 Sum_probs=61.1
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccc-cCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPR-GNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr-~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
+|+|+|+|..++|||||+++|++..+... ....+|+.+....+... .....+.+.||..... ++.......+..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~Dt~G~~~~~--~~~~~~~~~~~~ 75 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETD---RGRFLLVDTGGLWSGD--KWEKKIQEKVDR 75 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEET---TEEEEEEECGGGCSSS--SCCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeC---CceEEEEECCCCCCcc--chHHHHHHHHHH
Confidence 48999999999999999999999875322 22345555444333322 1223466777754211 111112222222
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhh--HHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLAN--SDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~--~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
..... ++ -+.++| ++..+.. ....+..++ .+.+.|.|+||.|+.+.
T Consensus 76 ~~~~~---------------~~-~i~v~d-----~~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 76 ALEDA---------------EV-VLFAVD-----GRAELTQADYEVAEYLRR---KGKPVILVATKVDDPKH 123 (161)
T ss_dssp HTTTC---------------SE-EEEEEE-----SSSCCCHHHHHHHHHHHH---HTCCEEEEEECCCSGGG
T ss_pred HHHhC---------------CE-EEEEEE-----CCCcccHhHHHHHHHHHh---cCCCEEEEEECcccccc
Confidence 22111 11 234556 2222222 233444444 35789999999999864
No 18
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.15 E-value=3.1e-06 Score=95.37 Aligned_cols=121 Identities=16% Similarity=0.132 Sum_probs=61.1
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccc-cCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPR-GNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr-~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
+|.|++||++|+|||||+|+|+|..+-.+ ...++||....-.+.... ....+++.+|....+-+.+.+.+...+..
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~---~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG---KTFKLVDTCGVFDNPQDIISQKMKEVTLN 77 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT---EEEEEEECTTTTSSGGGCCCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC---eEEEEEECCCccccccchHHHHHHHHHHH
Confidence 58999999999999999999999864222 334677776554443321 12356788885432111122223333332
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhH--HHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANS--DALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~--~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
.... .++ -|.+|| +...++.. ...++.++ .+..+|.|+||+|+.+
T Consensus 78 ~~~~---------------ad~-il~V~D-----~~~~~~~~d~~i~~~l~~---~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 78 MIRE---------------ADL-VLFVVD-----GKRGITKEDESLADFLRK---STVDTILVANKAENLR 124 (439)
T ss_dssp HHTT---------------CSE-EEEEEE-----TTTCCCHHHHHHHHHHHH---HTCCEEEEEESCCSHH
T ss_pred HHHh---------------CCE-EEEEEE-----CCCCCCHHHHHHHHHHHH---cCCCEEEEEeCCCCcc
Confidence 2221 111 355577 33323222 22233333 3678999999999853
No 19
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.14 E-value=1e-05 Score=79.32 Aligned_cols=126 Identities=24% Similarity=0.297 Sum_probs=63.0
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccC--CCCCcccEEEEEeeccCcccceeeccCCCccccChhH-HHHHHHH
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSE-IRREIQA 121 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~--~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~-i~~~i~~ 121 (792)
...++|+|+|..++|||||+++|+|..|.+... ..+|+......+ +.-..+++.||....+... .......
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~------~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII------NDELHFVDVPGYGFAKVSKSEREAWGR 94 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE------TTTEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE------CCcEEEEECCCCCccccCHHHHHHHHH
Confidence 467899999999999999999999997655433 234655433332 1124567888854322111 1111222
Q ss_pred HHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 122 QTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 122 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
.+..+......+ + .-+.++| ++......+ ..+.+.+...+.++|.|+||+|+.+.
T Consensus 95 ~~~~~~~~~~~~------------~-~~i~v~d-----~~~~~~~~~-~~~~~~~~~~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 95 MIETYITTREEL------------K-AVVQIVD-----LRHAPSNDD-VQMYEFLKYYGIPVIVIATKADKIPK 149 (195)
T ss_dssp HHHHHHHHCTTE------------E-EEEEEEE-----TTSCCCHHH-HHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred HHHHHHhhhhcC------------C-EEEEEEE-----CCCCCCHHH-HHHHHHHHHcCCCEEEEEECcccCCh
Confidence 222221111100 1 1355667 333222222 22222222356789999999999864
No 20
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.13 E-value=1.5e-05 Score=83.66 Aligned_cols=61 Identities=18% Similarity=0.295 Sum_probs=44.5
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
..-+.|+|||..|+|||||+++|+|..+.+.+. ..+|+.+....+... .....+++.||..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~l~iiDTpG~~ 98 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA---GFTLNIIDTPGLI 98 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET---TEEEEEEECCCSE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC---CeEEEEEECCCCC
Confidence 346799999999999999999999998654443 456777766655432 1234577889864
No 21
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.13 E-value=8.2e-06 Score=82.88 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=37.1
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
..++|+|||+.++|||||+++|+|..+.......+|+....-.+... .....+.+.||..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~ 87 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK---LNKYQIIDTPGLL 87 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET---TEEEEEEECTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC---CCeEEEEECCCCc
Confidence 46799999999999999999999998643333445654432222211 1223566788863
No 22
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.13 E-value=1.3e-05 Score=90.11 Aligned_cols=146 Identities=20% Similarity=0.264 Sum_probs=74.4
Q ss_pred CcchHHHHHHHHHHHHHhCCC-CCCCCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccce
Q 003841 22 GGSVIPLVNKLQDIFAQLGSQ-STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYG 99 (792)
Q Consensus 22 ~~~l~~~~nkL~d~~~~~G~~-~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~ 99 (792)
+..+-.+++.|.+.+...... ..-..++|+|||+.|+|||||+++|+|..+...+. .++||......+.... ...
T Consensus 149 g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~---~~~ 225 (436)
T 2hjg_A 149 GLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ---QEF 225 (436)
T ss_dssp TBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT---EEE
T ss_pred CCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC---eEE
Confidence 445656666665544321100 12245799999999999999999999998753333 4567766544443321 112
Q ss_pred eeccCCCcccc-----ChhHHHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHh
Q 003841 100 EFLHLPGKRFY-----DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAG 174 (792)
Q Consensus 100 ~~~~~~g~~~~-----d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~ 174 (792)
.+++.||.... ..+... .+. +.... ...++ -|.++| ++.....++ ++++.
T Consensus 226 ~l~DT~G~~~~~~~~~~~e~~~-~~~--~~~~~---------------~~ad~-~llv~D-----~~~~~s~~~-~~~~~ 280 (436)
T 2hjg_A 226 VIVDTAGMRKKGKVYETTEKYS-VLR--ALKAI---------------DRSEV-VAVVLD-----GEEGIIEQD-KRIAG 280 (436)
T ss_dssp EETTHHHHTCBTTBCCCCSHHH-HHH--HHHHH---------------HHCSE-EEEEEE-----TTTCCCHHH-HHHHH
T ss_pred EEEECCCcCcCccccchHHHHH-HHH--HHHHH---------------HhCCE-EEEEEc-----CCcCCcHHH-HHHHH
Confidence 34555553110 001100 000 00011 01122 455678 554444443 23444
Q ss_pred hhCCCCCeEEEEeecCCCCCC
Q 003841 175 IADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 175 ~vDp~g~RTIGVlTK~D~~~~ 195 (792)
.+...|...|.|+||+|+++.
T Consensus 281 ~~~~~~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 281 YAHEAGKAVVIVVNKWDAVDK 301 (436)
T ss_dssp HHHHTTCEEEEEEECGGGSCC
T ss_pred HHHHcCCcEEEEEECccCCCc
Confidence 444468999999999999864
No 23
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.11 E-value=2.3e-05 Score=75.31 Aligned_cols=118 Identities=20% Similarity=0.289 Sum_probs=66.0
Q ss_pred CCCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHH
Q 003841 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (792)
Q Consensus 44 ~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~ 123 (792)
.-..+.|+|+|+.++|||||+++|++..+.+....+.|.......+... .....+.+.||... +..+.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~Dt~G~~~--~~~~~------- 72 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN---DKKITFLDTPGHEA--FTTMR------- 72 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEET---TEEEEESCCCSSSS--SSCSC-------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeC---CceEEEEECCCCHH--HHHHH-------
Confidence 4467899999999999999999999988754444444433222111111 11224566777421 11100
Q ss_pred HHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
...+ ...++ -+.++| ++... ..+.+...+.+...+.+.|.|+||.|+.+.
T Consensus 73 ------~~~~---------~~~d~-~i~v~d-----~~~~~-~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 73 ------ARGA---------QVTDI-VILVVA-----ADDGV-MPQTVEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp ------CSSC---------CCCCE-EEEEEE-----TTCCC-CHHHHHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred ------HHHH---------hhCCE-EEEEEE-----CCCCC-cHHHHHHHHHHHhCCCCEEEEEECccCCcC
Confidence 0011 11222 344556 22221 233344455555557889999999999874
No 24
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.11 E-value=1.1e-05 Score=84.29 Aligned_cols=120 Identities=19% Similarity=0.189 Sum_probs=70.0
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChh----HHHHHHHHH
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFS----EIRREIQAQ 122 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~----~i~~~i~~~ 122 (792)
+|.|+|||..|+|||||+|+|+|..+..-...++|.....-.+... .....++++||....... ...+.+...
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~ 77 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG---EHLIEITDLPGVYSLVANAEGISQDEQIAAQ 77 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET---TEEEEEEECCCCSSCC------CHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC---CeEEEEEeCCCcccccccccCCCHHHHHHHH
Confidence 4899999999999999999999997533333466765554444332 123457889985322111 111222111
Q ss_pred HHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 123 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
.+.. ..+++ -+.+|| ++. + ...+.+...+-..+.++|.|+||+|+..
T Consensus 78 --~~~~--------------~~~d~-vi~VvD-----as~-~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 78 --SVID--------------LEYDC-IINVID-----ACH-L--ERHLYLTSQLFELGKPVVVALNMMDIAE 124 (256)
T ss_dssp --HHHH--------------SCCSE-EEEEEE-----GGG-H--HHHHHHHHHHTTSCSCEEEEEECHHHHH
T ss_pred --HHhh--------------CCCCE-EEEEee-----CCC-c--hhHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 1110 01222 355677 333 2 1224455556666899999999999874
No 25
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.09 E-value=5.7e-06 Score=81.08 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=38.1
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 20 PLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 20 ~~~~~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
.+.+.+-.+.+.|.+++..+.....-..+.|+|+|..++|||||+++|+|..+.
T Consensus 21 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~ 74 (193)
T 2ged_A 21 INKRKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVR 74 (193)
T ss_dssp TTTTBCHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 355566677777777766665444567789999999999999999999998763
No 26
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.08 E-value=4.4e-06 Score=94.59 Aligned_cols=126 Identities=18% Similarity=0.179 Sum_probs=62.4
Q ss_pred CCCCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHH
Q 003841 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (792)
Q Consensus 44 ~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (792)
....|.|++||+.|+|||||+|+|+|..+-.+.. ..+||......+... .....+++.+|.... -+.+.+.+...
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~---~~~~~liDT~G~~~~-~~~~~~~~~~~ 95 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL---NYDFNLIDTGGIDIG-DEPFLAQIRQQ 95 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTC---SSCCEEECCCC-------CCHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEEC---CceEEEEECCCCCCc-chHHHHHHHHH
Confidence 4568999999999999999999999986533332 357776655544322 123356678885421 11122333333
Q ss_pred HHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 123 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
+...... +++ -|.+|| +...+...+ ..+++.+...+...|.|+||+|+.+.
T Consensus 96 ~~~~~~~---------------ad~-il~VvD-----~~~~~~~~d-~~l~~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 96 AEIAMDE---------------ADV-IIFMVN-----GREGVTAAD-EEVAKILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHHHH---------------CSE-EEEEEE-----SSSCSCHHH-HHHHHHHTTCCSCEEEEEECC-----
T ss_pred HHhhHhh---------------CCE-EEEEEe-----CCCCCChHH-HHHHHHHHHcCCCEEEEEECccchhh
Confidence 3222211 111 344567 333333333 33445555578999999999998753
No 27
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.08 E-value=1.5e-05 Score=90.11 Aligned_cols=146 Identities=20% Similarity=0.284 Sum_probs=76.4
Q ss_pred CcchHHHHHHHHHHHHHhCC-CCCCCCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccce
Q 003841 22 GGSVIPLVNKLQDIFAQLGS-QSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYG 99 (792)
Q Consensus 22 ~~~l~~~~nkL~d~~~~~G~-~~~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~ 99 (792)
+..+-.+++.+.+.+..... ...-..++|+|||+.++|||||+++|+|......+. ..+|+.+....+.... .-.
T Consensus 169 g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~---~~~ 245 (456)
T 4dcu_A 169 GLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ---QEF 245 (456)
T ss_dssp CTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT---EEE
T ss_pred ccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC---ceE
Confidence 34555666666544322211 122356899999999999999999999986544433 3567766544443321 123
Q ss_pred eeccCCCcccc----C-hhHHHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHh
Q 003841 100 EFLHLPGKRFY----D-FSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAG 174 (792)
Q Consensus 100 ~~~~~~g~~~~----d-~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~ 174 (792)
.+++.||.... + .+... .+. +..... ..++ .|.++| +...+..++ ..++.
T Consensus 246 ~l~DT~G~~~~~~~~~~~e~~~-~~~--~~~~~~---------------~ad~-~llviD-----~~~~~~~~~-~~~~~ 300 (456)
T 4dcu_A 246 VIVDTAGMRKKGKVYETTEKYS-VLR--ALKAID---------------RSEV-VAVVLD-----GEEGIIEQD-KRIAG 300 (456)
T ss_dssp EETTGGGTTTBTTBCCCCSHHH-HHH--HHHHHH---------------HCSE-EEEEEE-----TTTCCCHHH-HHHHH
T ss_pred EEEECCCCCcCcccchHHHHHH-HHH--HHHHHh---------------hCCE-EEEEEe-----CCCCcCHHH-HHHHH
Confidence 45677773210 0 01110 000 101111 0111 345578 555554444 33444
Q ss_pred hhCCCCCeEEEEeecCCCCCC
Q 003841 175 IADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 175 ~vDp~g~RTIGVlTK~D~~~~ 195 (792)
.+...|...|.|+||+|+.+.
T Consensus 301 ~~~~~~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 301 YAHEAGKAVVIVVNKWDAVDK 321 (456)
T ss_dssp HHHHTTCEEEEEEECGGGSCC
T ss_pred HHHHcCCCEEEEEEChhcCCC
Confidence 444468999999999999864
No 28
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.06 E-value=6.9e-06 Score=92.39 Aligned_cols=123 Identities=20% Similarity=0.189 Sum_probs=60.6
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCcccc-CCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~-~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
.|.|++||+.|+|||||+|+|+|..+-.+. ...+||......+... .....+++.+|....+. ++.+.+...+..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~---~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~ 78 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL---NYDFNLIDTGGIDIGDE-PFLAQIRQQAEI 78 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTC---SSCCEEEC----------CHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEEC---CceEEEEECCCCCCcch-hHHHHHHHHHHH
Confidence 589999999999999999999998653333 2457776654443321 12234567777542221 133333333322
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
.... .++ -|.+|| +...+...+ ..+++.+...+..+|.|+||+|+.+.
T Consensus 79 ~~~~---------------ad~-il~vvD-----~~~~~~~~d-~~~~~~l~~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 79 AMDE---------------ADV-IIFMVN-----GREGVTAAD-EEVAKILYRTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHHH---------------CSE-EEEEEE-----TTTCSCHHH-HHHHHHHTTCCSCEEEEEECCCC---
T ss_pred HHHh---------------CCE-EEEEEe-----CCCCCCHHH-HHHHHHHHHcCCCEEEEEECccCccc
Confidence 2211 111 355677 333333222 23444445568899999999999753
No 29
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.04 E-value=3.7e-05 Score=74.59 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=39.7
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~ 107 (792)
+++|+|+|+.++|||||+++|+|..+......++|+.+..+.+. ...+.+.||.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~-------~~~l~Dt~G~ 54 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK-------NHKIIDMPGF 54 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET-------TEEEEECCCB
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC-------CEEEEECCCc
Confidence 47899999999999999999999986444445667776655442 2346677884
No 30
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.03 E-value=2.2e-05 Score=89.36 Aligned_cols=122 Identities=15% Similarity=0.173 Sum_probs=52.6
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCcccc-CCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHh
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~-~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~ 126 (792)
.+|+|||..|+|||||||+|+|.++..++ ...+||..++-.+.... ....+++.||... +....+.+- ..+
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g---~~l~liDT~G~~~--~~~~ve~~g--i~~- 305 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK---TMFRLTDTAGLRE--AGEEIEHEG--IRR- 305 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------CEEEEETT---EEEEEEC-----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC---eEEEEEECCCCCc--chhHHHHHH--HHH-
Confidence 46999999999999999999998653333 34567766544443321 2234566777432 222111110 000
Q ss_pred hcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhh---HHHHHHHhhhCCCCCeEEEEeecCCCCCCc
Q 003841 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLAN---SDALQIAGIADPDGYRTIGIITKLDIMDRG 196 (792)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~---~~al~la~~vDp~g~RTIGVlTK~D~~~~g 196 (792)
.... +...++ -|.++| ++..... .+...+.+.+. +..+|.|+||+|+.+..
T Consensus 306 --~~~~---------~~~aD~-vl~VvD-----~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 306 --SRMK---------MAEADL-ILYLLD-----LGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANA 359 (476)
T ss_dssp ----CC---------CSSCSE-EEEEEE-----TTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTT
T ss_pred --HHhh---------cccCCE-EEEEEE-----CCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCcc
Confidence 0001 122233 455677 3322211 13344455554 68999999999998653
No 31
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.03 E-value=2.3e-05 Score=86.19 Aligned_cols=126 Identities=16% Similarity=0.152 Sum_probs=66.9
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
..|.|++||..|+||||||++|+|..+...+.-.+|+.|+.-.+.-.. ....+.+.+|.......++.+.+......
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g---~~v~l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN---RKIMLVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT---EEEEEEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC---EEEEEEeCCCchhcCCHHHHHHHHHHHHH
Confidence 578899999999999999999999976333445678877655544321 12245567775322112222222221111
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc---hh--hHHHHHHHhhhCCCCCeEEEEeecCCCCCCc
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD---LA--NSDALQIAGIADPDGYRTIGIITKLDIMDRG 196 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D---l~--~~~al~la~~vDp~g~RTIGVlTK~D~~~~g 196 (792)
+.. .++ -|.++| +... .. ...+.++.+++...+.++|.|+||+|+.+.+
T Consensus 255 ~~~----------------aD~-il~VvD-----~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 255 AKY----------------SDA-LILVID-----STFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp GGG----------------SSE-EEEEEE-----TTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred HHh----------------CCE-EEEEEE-----CCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 110 111 244567 2221 11 1223556666666678899999999998754
No 32
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.02 E-value=9.6e-06 Score=77.76 Aligned_cols=118 Identities=15% Similarity=0.138 Sum_probs=64.2
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
...+|+|+|..++|||||+++|++..+......+ +...................+.+.||... +..+.. .
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~-------~ 83 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHT-IGVEFGTRIIEVSGQKIKLQIWDTAGQER--FRAVTR-------S 83 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTS-CCCCEEEEEEEETTEEEEEEEEECTTGGG--TCHHHH-------H
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-cceEEEEEEEEECCeEEEEEEEECCCChH--hhhhHH-------H
Confidence 3579999999999999999999998764332222 12122122111111111234567777432 222211 1
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchh---hHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLA---NSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~---~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
..... ++ -+.++| ++.... ...++...+.....+...|.|+||.|+.+
T Consensus 84 ~~~~~---------------d~-~i~v~d-----~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 84 YYRGA---------------AG-ALMVYD-----ITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp HHHTC---------------SE-EEEEEE-----TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HhccC---------------CE-EEEEEe-----CcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 11110 11 344566 332211 12455556666656889999999999964
No 33
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.01 E-value=1.9e-05 Score=76.05 Aligned_cols=118 Identities=15% Similarity=0.092 Sum_probs=62.3
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHh
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~ 126 (792)
..+|+|||..++|||||+++|++..+.+......+-..................+.+.||... +..+ +..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~--~~~~-------~~~- 79 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER--FRSV-------THA- 79 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------C-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH--HHHH-------HHH-
Confidence 458999999999999999999999874433222111111111111111111234556777321 1111 111
Q ss_pred hcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hh-hHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LA-NSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~-~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
.+ ...++ -+.++| ++.. +. -..++..++...+.+...|.|+||.|+.+
T Consensus 80 -----~~---------~~~d~-ii~v~d-----~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 80 -----YY---------RDAHA-LLLLYD-----VTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp -----CG---------GGCSE-EEEEEE-----TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred -----Hc---------cCCCE-EEEEEE-----CCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 01 11122 344567 3322 11 13456666666667889999999999975
No 34
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.01 E-value=3.4e-05 Score=76.22 Aligned_cols=118 Identities=17% Similarity=0.113 Sum_probs=63.2
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
...+|+|||..++|||||+++|++..+.+....+.+.......+. .........+.+.||.. ++..+ +..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~--~~~~~-------~~~ 76 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIY-RNDKRIKLQIWDTAGLE--RYRTI-------TTA 76 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEE-ETTEEEEEEEEEECCSG--GGHHH-------HHT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEE-ECCeEEEEEEEECCCch--hhcch-------HHH
Confidence 356899999999999999999999986443222211100001111 11011123456677753 22221 111
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchh---hHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLA---NSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~---~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
.... .++ -+.++| ++..-. ...++...+.....+...|.|+||.|+.+
T Consensus 77 ~~~~---------------~d~-ii~v~d-----~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 77 YYRG---------------AMG-FILMYD-----ITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp TGGG---------------CSE-EEEEEE-----TTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred hhcC---------------CCE-EEEEEE-----CcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 1111 111 345567 322211 12355556666566889999999999975
No 35
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.00 E-value=1.9e-05 Score=75.80 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=27.0
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~T 81 (792)
..++|+|+|..++|||||+++|+|..+......+.|
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~ 43 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG 43 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBS
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCce
Confidence 568999999999999999999999976433333333
No 36
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.99 E-value=3.2e-05 Score=76.12 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=60.5
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHh
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~ 126 (792)
..+|+|||+.++|||||+++|++..+......+.+.......+.. ....-...+.+.||... +..+... .
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~--~~~~~~~-------~ 95 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQER--FNSITSA-------Y 95 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGG--GHHHHHH-------H
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHH--HHHHHHH-------H
Confidence 458999999999999999999998764433333322111111111 10011234557777432 2222111 1
Q ss_pred hcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hh-hHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LA-NSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~-~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
... .++ -+.++| ++.. +. ...++..++...+.+...|.|+||.|+.+
T Consensus 96 ~~~---------------~d~-iilV~D-----~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 96 YRS---------------AKG-IILVYD-----ITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp HHH---------------CSE-EEEEEE-----TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hcC---------------CCE-EEEEEE-----CcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 110 011 344566 3221 11 13456677777777899999999999864
No 37
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.99 E-value=1.7e-05 Score=90.54 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=41.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCcccc-CCCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~-~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
.+|++||..|+|||||||+|+|.++..++ ...+||.++.-.+.... ....+++.+|..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g---~~~~l~DTaG~~ 302 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG---ILFRIVDTAGVR 302 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT---EEEEEEESSCCC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC---eEEEEEECCCcc
Confidence 68999999999999999999998753333 34678887665554321 224567888854
No 38
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.97 E-value=1.3e-05 Score=78.46 Aligned_cols=119 Identities=14% Similarity=0.096 Sum_probs=66.5
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
...+|+|+|..++|||||+++|++..+......+.|.......+.... ..-...+.+.||... +..+.. .
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~--~~~~~~-------~ 84 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG-KTIKLQIWDTAGQER--FRTITS-------S 84 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETT-EEEEEEEEEECCSGG--GCTTHH-------H
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECC-EEEEEEEEECCCcHh--hhhhHH-------H
Confidence 346899999999999999999999877544444444322222221111 011234557777432 111111 1
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCch---hhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDL---ANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl---~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
+... .++ -+.++| ++..- ....++......-+.+...|.|+||.|+.+.
T Consensus 85 ~~~~---------------~d~-~i~v~d-----~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 85 YYRG---------------AHG-IIVVYD-----VTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp HHTT---------------CSE-EEEEEE-----TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHhh---------------CCE-EEEEEE-----CcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 1111 111 344566 32211 1234566666666678899999999999753
No 39
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.96 E-value=1.8e-05 Score=77.26 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=25.3
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
...+|+|+|..++|||||+++|+|..+.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~ 33 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFH 33 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC
Confidence 4568999999999999999999999864
No 40
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.94 E-value=1.4e-05 Score=79.98 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=61.7
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCC--CcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHH
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC--TRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~--TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~ 124 (792)
.-+|+|||+.++|||||+++|+|..+......+. +.....+ .......-...+.+.+|.... ..+...
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~~~~l~Dt~G~~~~--~~~~~~------ 80 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTF--LDDQGNVIKFNVWDTAGQEKK--AVLKDV------ 80 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEE--EBTTSCEEEEEEEEECSGGGT--SCCCHH------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEE--EeCCCcEEEEEEEecCCchhh--chHHHH------
Confidence 3589999999999999999999887643222221 1111111 111100011245566764311 111110
Q ss_pred HhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCch---hhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDL---ANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl---~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
... ..++ -+.++| ++... ....++...+..-+.+...|.|+||+|+.+.
T Consensus 81 -~~~---------------~~d~-~i~v~d-----~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 81 -YYI---------------GASG-AILFFD-----VTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR 132 (218)
T ss_dssp -HHT---------------TCSE-EEEEEE-----TTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC--
T ss_pred -Hhh---------------cCCE-EEEEEe-----CCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 000 1112 355567 33221 1234566666666677899999999999764
No 41
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.94 E-value=6.8e-05 Score=72.70 Aligned_cols=123 Identities=22% Similarity=0.153 Sum_probs=66.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCcccc-CCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHH-HHHHHHH
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRRE-IQAQTDK 125 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~-~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~-i~~~~~~ 125 (792)
.+|+|||+.++|||||+++|+|..+...+ ...+|+....-.+.... ....+.+.||..... ..++.. +......
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~Dt~G~~~~~-~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG---MPLHIIDTAGLREAS-DEVERIGIERAWQE 80 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT---EEEEEEECCCCSCCS-SHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC---eEEEEEECCCcccch-hHHHHHHHHHHHHH
Confidence 47999999999999999999998642222 23456554433332211 123466778753211 122211 2111112
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
+.+ .++ -+.++|.--... .....++...++..+.+...|.|+||+|+.+
T Consensus 81 ~~~----------------ad~-~i~v~D~~~~~s---~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 81 IEQ----------------ADR-VLFMVDGTTTDA---VDPAEIWPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp HHT----------------CSE-EEEEEETTTCCC---CSHHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred HHh----------------CCE-EEEEEECCCCCC---HHHHHHHHHHHHhcccCCCEEEEEECccCCc
Confidence 211 111 244566321111 1223555555555566788999999999864
No 42
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.93 E-value=5.6e-05 Score=85.03 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=47.4
Q ss_pred CcchHHHHHHHHHHHHHhCCC--C---CCCCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCc
Q 003841 22 GGSVIPLVNKLQDIFAQLGSQ--S---TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTD 95 (792)
Q Consensus 22 ~~~l~~~~nkL~d~~~~~G~~--~---~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~ 95 (792)
+..+-.+++.|.+.+...+.. . .-..++|++||++|+||||||++|+|..+..++. .++||.|....+....
T Consensus 150 g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g-- 227 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG-- 227 (439)
T ss_dssp TBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--
T ss_pred CCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC--
Confidence 445666677766655443311 1 2345799999999999999999999997533332 4577877654443321
Q ss_pred ccceeeccCCCc
Q 003841 96 EEYGEFLHLPGK 107 (792)
Q Consensus 96 ~~~~~~~~~~g~ 107 (792)
.. ..+++.+|.
T Consensus 228 ~~-~~l~Dt~G~ 238 (439)
T 1mky_A 228 RK-YVFVDTAGL 238 (439)
T ss_dssp EE-EEESSCSCC
T ss_pred EE-EEEEECCCC
Confidence 11 234456663
No 43
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.90 E-value=7.4e-05 Score=77.41 Aligned_cols=61 Identities=13% Similarity=0.038 Sum_probs=41.4
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccCC-C-CCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-I-CTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~-~-~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
-....|+|||..++|||||+++|+|....+.+.. . +|+......+... .....+++.||..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~i~iiDTpG~~ 82 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG---NREIVIIDTPDMF 82 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET---TEEEEEEECCGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC---CCEEEEEECcCCC
Confidence 4567999999999999999999999975454432 2 6776554333322 1234567888854
No 44
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.90 E-value=3.2e-05 Score=81.49 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=42.1
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
-+.|+|+|..|+|||||+|+|+|..+..-...++|+.+....+.... ....++++||..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~---~~~~liDtpG~~ 61 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD---HQVTLVDLPGTY 61 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS---CEEEEEECCCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC---CceEEEECcCCC
Confidence 46899999999999999999999975323334667766655554321 234577889853
No 45
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.89 E-value=1.8e-05 Score=75.12 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=63.1
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCC--CCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHH
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~--~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~ 124 (792)
..+|+|+|..++|||||+++|+|..+.+....+ +|.....+.+. .......+.+.||... +..+..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dt~G~~~--~~~~~~------- 73 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ---NELHKFLIWDTAGLER--FRALAP------- 73 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET---TEEEEEEEEEECCSGG--GGGGTH-------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEEC---CeEEEEEEEcCCCchh--hhcccH-------
Confidence 358999999999999999999999864432222 12211112211 1112234566777531 222111
Q ss_pred HhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCch--hh-HHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDL--AN-SDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl--~~-~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
...... ++ -+.++| ++... .+ ..++...+.........+.|.||.|+.+
T Consensus 74 ~~~~~~---------------~~-~i~v~d-----~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 74 MYYRGS---------------AA-AIIVYD-----ITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp HHHTTC---------------SE-EEEEEE-----TTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred hhCcCC---------------CE-EEEEEE-----CcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 111110 11 345566 33221 11 3455666666666788999999999975
No 46
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.89 E-value=0.0001 Score=73.54 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=24.5
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
...+|+|||+.++||||||++|++..+
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999999876
No 47
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.89 E-value=1.4e-05 Score=76.63 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=63.1
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHh
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~ 126 (792)
-.+|+|+|..++|||||+++|++..+.+....+.|.......+.... ......+.+.||... +..+... .
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~G~~~--~~~~~~~-------~ 83 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQER--FRSLIPS-------Y 83 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETT-EEEEEEEEEECCSGG--GGGGSHH-------H
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECC-eEEEEEEEECCCcHH--HHHHHHH-------H
Confidence 35899999999999999999998876544443444322222221111 111234567777432 2221111 1
Q ss_pred hcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hh-hHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LA-NSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~-~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
... .++ -+.++| ++.. +. ...++...+...+.+...|.|+||.|+.+
T Consensus 84 ~~~---------------~d~-~i~v~d-----~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 84 IRD---------------STV-AVVVYD-----ITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp HHT---------------CSE-EEEEEE-----TTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred hcC---------------CCE-EEEEEE-----CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 100 111 345567 2221 11 12345544444456788999999999975
No 48
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.88 E-value=1.8e-05 Score=77.77 Aligned_cols=116 Identities=14% Similarity=0.085 Sum_probs=63.4
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCC--CCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~--~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~ 123 (792)
...+|+|||+.++|||||+++|++..|......+ +|+....+.+ ........+.+.||... +..+..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~--~~~~~~------ 90 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC---GNELHKFLIWDTAGQER--FHSLAP------ 90 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEEC---SSSEEEEEEEEECCSGG--GGGGTH------
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEe---CCEEEEEEEEcCCCchh--hHhhhH------
Confidence 3468999999999999999999998763222211 2221111111 11111234557777432 222211
Q ss_pred HHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCch---hhHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDL---ANSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl---~~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
..... .++ -+.++| ++..- ....++...++..+.+.+.|.|+||.|+.+
T Consensus 91 -~~~~~---------------~d~-iilV~d-----~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 91 -MYYRG---------------SAA-AVIVYD-----ITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp -HHHTT---------------CSE-EEEEEE-----TTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred -Hhhcc---------------CCE-EEEEEe-----CCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 11111 111 344566 22211 123456666666667889999999999975
No 49
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.88 E-value=7.3e-05 Score=73.60 Aligned_cols=25 Identities=36% Similarity=0.639 Sum_probs=5.3
Q ss_pred CeEEEEccCCCchhHHHHHHhCC--CC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR--DF 72 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~--~~ 72 (792)
.+|+|+|+.++|||||+++|++. .|
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~ 47 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKF 47 (208)
T ss_dssp EEEEEC---------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcc
Confidence 48999999999999999999998 55
No 50
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.87 E-value=4.6e-05 Score=75.60 Aligned_cols=119 Identities=14% Similarity=0.108 Sum_probs=65.7
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHH
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~ 124 (792)
-..++|+|||+.++|||||+++|++..+.+....+.|+......+.... ......+.+.||... +..+. .
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~--~~~~~-------~ 87 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING-KKVKLQLWDTAGQER--FRTIT-------T 87 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETT-EEEEEEEECCTTGGG--GTCCC-------H
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECC-EEEEEEEEeCCCcHH--HHHHH-------H
Confidence 3467999999999999999999999887544444444332222222111 011234567777432 11110 0
Q ss_pred HhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hhh-HHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LAN-SDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~~-~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
.... ..++ -+.++| ++.. +.. ..++..++...+.+.+.|.|+||+|+.+
T Consensus 88 ~~~~---------------~~d~-ii~v~d-----~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 139 (213)
T 3cph_A 88 AYYR---------------GAMG-IILVYD-----VTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139 (213)
T ss_dssp HHHT---------------TCSE-EEEEEE-----TTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred HHhc---------------cCCE-EEEEEE-----CCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 1111 1111 344566 2221 111 2456666666666889999999999943
No 51
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.86 E-value=2.7e-05 Score=74.76 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=63.4
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
..++|+|||..++|||||+++|++..+.. .....|+......+... .......+.+.||... +..+....
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~--~~~~~~~~------ 77 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVS-DYDPTIEDSYTKICSVD-GIPARLDILDTAGQEE--FGAMREQY------ 77 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCS-SCCTTCCEEEEEEEEET-TEEEEEEEEECCCTTT--TSCCHHHH------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCCcCceEEEEEEEC-CEEEEEEEEECCCchh--hHHHHHHH------
Confidence 45799999999999999999999987633 22233443332112111 1111234567777432 22222111
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hh-hHHHHH-HHhhhCCCCCeEEEEeecCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LA-NSDALQ-IAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~-~~~al~-la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
... .++ -+.++| ++.. +. ...++. +.+.....+...|.|+||.|+.+
T Consensus 78 -~~~---------------~d~-~i~v~d-----~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 78 -MRA---------------GHG-FLLVFA-----INDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp -HHH---------------CSE-EEEEEE-----TTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred -Hhh---------------CCE-EEEEEe-----CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 000 011 244556 2221 11 112333 33556677889999999999965
No 52
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.86 E-value=5.1e-05 Score=78.64 Aligned_cols=59 Identities=17% Similarity=0.094 Sum_probs=39.7
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCC--CCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~--~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
-.+|++||..|+|||||+|+|+|..+...+.. .+|+.+....+... .....+++.||..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~---~~~i~liDTPG~~ 81 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD---KCHVEVVDTPDIF 81 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEET---TEEEEEEECCSCS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC---CcEEEEEECCCCC
Confidence 45899999999999999999999987654433 37887765554432 2234578899863
No 53
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.85 E-value=2.2e-05 Score=89.15 Aligned_cols=38 Identities=34% Similarity=0.317 Sum_probs=29.3
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccE
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPL 85 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~ 85 (792)
.+|++||..|+|||||||+|+|..+..++. ..+||..+
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~ 263 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVV 263 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEE
Confidence 469999999999999999999986543333 45666554
No 54
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.85 E-value=1.6e-05 Score=75.57 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=25.0
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
..+|+|+|+.++|||||+++|++..+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~ 34 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDK 34 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcC
Confidence 35899999999999999999998876433
No 55
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.85 E-value=7.3e-05 Score=71.67 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=34.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
+.|++||+.|+|||||+++|+|..+......+.|+.+..-.+... .....+.+.||..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~l~i~Dt~G~~ 61 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN---GEKFKVVDLPGVY 61 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET---TEEEEEEECCCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC---CcEEEEEECCCcc
Confidence 579999999999999999999986532222234444433333211 1223456778753
No 56
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.85 E-value=3.6e-05 Score=75.40 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=26.0
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
...+|+|||..++|||||+++|++..+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~ 53 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHD 53 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC
Confidence 356899999999999999999999876443
No 57
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.84 E-value=6.8e-05 Score=70.60 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
-+|+|+|+.++|||||+++|++..+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~ 30 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIE 30 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcc
Confidence 379999999999999999999887643
No 58
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.83 E-value=2.5e-05 Score=75.74 Aligned_cols=117 Identities=17% Similarity=0.115 Sum_probs=63.0
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHh
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~ 126 (792)
..+|+|+|+.++|||||+++|++..+.+....+.+.......+. .....-...+.+.||... +..+ +...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~--~~~~-------~~~~ 79 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN-VGGKYVKLQIWDTAGQER--FRSV-------TRSY 79 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEE-ETTEEEEEEEEEECCSGG--GHHH-------HHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEE-ECCEEEEEEEEeCCCcHH--HHHH-------HHHH
Confidence 46899999999999999999999876443333332211111111 111011234566777432 2221 1111
Q ss_pred hcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchh---hHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLA---NSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~---~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
... .++ -+.++| ++..-. ...++...+.....+...|.|+||.|+.+
T Consensus 80 ~~~---------------~d~-~i~v~d-----~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 80 YRG---------------AAG-ALLVYD-----ITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp STT---------------CSE-EEEEEE-----TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred Hhc---------------CCE-EEEEEE-----CcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 111 111 344566 222111 12345555666566889999999999964
No 59
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.83 E-value=3.7e-05 Score=74.60 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=24.4
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
..+|+|+|+.++|||||+++|++..+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~ 37 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFN 37 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 468999999999999999999988763
No 60
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.81 E-value=8.3e-05 Score=71.66 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=63.1
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHH
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~ 124 (792)
....+|+|+|..++|||||+++|++..+..... ..|.......+.... ..-...+.+.||.. ++..+....
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~-~~~~~~l~Dt~G~~--~~~~~~~~~----- 86 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE-PTKADSYRKKVVLDG-EEVQIDILDTAGQE--DYAAIRDNY----- 86 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC-TTCCEEEEEEEEETT-EEEEEEEEECCCTT--CCHHHHHHH-----
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCC-CccceEEEEEEEECC-EEEEEEEEECCCCc--ccHHHHHHH-----
Confidence 455789999999999999999999987643322 333333222222111 01123466778843 233322211
Q ss_pred HhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCch--h-hHHHHH-HHhhhCCCCCeEEEEeecCCCCC
Q 003841 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDL--A-NSDALQ-IAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl--~-~~~al~-la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
.... ++ .+.++| ++..- . ...++. +.+.....+.+.|.|+||+|+.+
T Consensus 87 --~~~~---------------d~-~i~v~d-----~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 87 --FRSG---------------EG-FLCVFS-----ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp --HHHC---------------SE-EEEEEE-----TTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred --hccC---------------CE-EEEEEE-----CcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 1100 11 344556 22211 1 122333 34444456789999999999965
No 61
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.81 E-value=6.9e-05 Score=70.66 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=24.2
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
..+|+|+|..++|||||+++|++..+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~ 30 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV 30 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC
Confidence 358999999999999999999998763
No 62
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.81 E-value=0.00022 Score=78.00 Aligned_cols=127 Identities=21% Similarity=0.160 Sum_probs=70.6
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCcccc-CCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHH-HH
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQ-AQ 122 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~-~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~-~~ 122 (792)
...+.|+|||..|+||||||++|+|..+ ..+ ....|+.+....+... .....+++.||.......+.. .++ ..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~-~~~~~~ 239 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDG---YFRYQIIDTPGLLDRPISERN-EIEKQA 239 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEET---TEEEEEEECTTTSSSCSTTSC-HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEec---CceEEEEeCCCccccchhhhh-HHHHHH
Confidence 4678999999999999999999999874 333 3456666544333221 122356677775332221110 111 11
Q ss_pred HHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCC-CCchhh-HHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPA-NSDLAN-SDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 123 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a-~~Dl~~-~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
...... ..++ -|.++| +.+. .-|+.. ..++...+..-+ +..+|.|+||.|+.+.
T Consensus 240 ~~~~~~---------------~ad~-illV~D--~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 240 ILALRY---------------LGNL-IIYIFD--PSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADE 295 (357)
T ss_dssp HHGGGG---------------TCSE-EEEEEC--TTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCH
T ss_pred HHHHHh---------------cCCE-EEEEEe--CCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCCh
Confidence 111110 1111 456678 2221 124443 345555554433 7899999999999763
No 63
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.81 E-value=6.4e-05 Score=78.45 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=41.8
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
.-..|+|||..++|||||+++|+|..+...+. ..+|..+....+... .....+++.||..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~l~liDTpG~~ 95 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG---GFTINIIDTPGLV 95 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET---TEEEEEEECCCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC---CeeEEEEECCCCC
Confidence 45789999999999999999999997643333 345666655554332 1234577889864
No 64
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.80 E-value=5.9e-05 Score=72.58 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=63.2
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCC--cccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT--RRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~T--R~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~ 123 (792)
...+|+|||..++|||||+++|++..+......+.+ .....+.+. .......+.+.||... +..+..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~Dt~G~~~--~~~~~~------ 79 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN---DATVKFEIWDTAGQER--YHSLAP------ 79 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEET---TEEEEEEEEECCCSGG--GGGGTH------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEEC---CEEEEEEEEeCCCChh--hhhhhH------
Confidence 346899999999999999999999876443322211 111112111 1111234567777432 222111
Q ss_pred HHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchh---hHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLA---NSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~---~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
..... .++ -+.++| ++.... ...++..+++....+...|.|+||.|+.+.
T Consensus 80 -~~~~~---------------~d~-~i~v~d-----~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 80 -MYYRG---------------AAA-AIIVFD-----VTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDA 132 (181)
T ss_dssp -HHHTT---------------CSE-EEEEEE-----TTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred -HHhcc---------------CCE-EEEEEE-----CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 11111 111 344567 332221 123455555554457889999999999753
No 65
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.79 E-value=6.9e-05 Score=71.81 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.2
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
...+|+|+|..++|||||+++|++..+.+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~ 34 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDT 34 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 34689999999999999999999887643
No 66
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.79 E-value=5.6e-05 Score=71.70 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=60.3
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHhh
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~ 127 (792)
.+|+|+|..++|||||+++|+|..+.+....+.|+......+... ...-...+.+.||...+ ..+.. ...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~--~~~~~-------~~~ 73 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-GKKVKLQIWDTAGQERF--RTITT-------AYY 73 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESS-SCEEEEEEECCTTGGGT--SCCCH-------HHH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCCChhh--hhhHH-------HHh
Confidence 579999999999999999999998754444444432222222111 11112345567774321 11100 000
Q ss_pred cCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hh-hHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LA-NSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~-~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
. ..++ -+.++| ++.. +. ...++...+.....+.+.|.|+||.|+.+
T Consensus 74 ~---------------~~d~-~i~v~d-----~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 74 R---------------GAMG-IILVYD-----ITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp T---------------TEEE-EEEEEE-----TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred c---------------cCCE-EEEEEE-----CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc
Confidence 0 0011 345567 3222 11 13456666666566889999999999943
No 67
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.77 E-value=3.4e-05 Score=73.73 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=22.7
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
.++|+|||+.++|||||+++|+|..+.+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~ 31 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERD 31 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC----
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCcc
Confidence 4689999999999999999999997643
No 68
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.76 E-value=2.5e-05 Score=76.69 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=25.4
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
...+|+|+|+.++|||||+++|++..|.+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~ 50 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTP 50 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCC
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCc
Confidence 45699999999999999999999987643
No 69
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.76 E-value=6.4e-05 Score=73.42 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=25.4
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
..+|+|||+.++|||||+++|++..+.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~ 50 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPA 50 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 45899999999999999999999886443
No 70
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.76 E-value=0.00012 Score=71.11 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=40.6
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
..-++|+|||+.++|||||+++|+|..+......+.|+.+....+... .....+.+.||..
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~Dt~G~~ 65 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN---GEKFKVVDLPGVY 65 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET---TEEEEEEECCCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC---CcEEEEEECCCcC
Confidence 455799999999999999999999986543333445555444333321 1233566778854
No 71
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.76 E-value=9.1e-05 Score=73.38 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=24.5
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
..+|+|||+.++|||||+++|++..+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~ 34 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYT 34 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 468999999999999999999998764
No 72
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.75 E-value=0.0001 Score=77.04 Aligned_cols=120 Identities=19% Similarity=0.150 Sum_probs=67.0
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHh
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~ 126 (792)
.+.|+|||..|+|||||+++|+|..+..-...++|.......+... .....++++||..........+.+... .+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~e~v~~~--~~ 79 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK---GYTINLIDLPGTYSLGYSSIDEKIARD--YL 79 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET---TEEEEEEECCCCSSCCSSSHHHHHHHH--HH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC---CeEEEEEECCCcCccCCCCHHHHHHHH--HH
Confidence 3689999999999999999999987633333456665554444332 123457788885322111111112111 11
Q ss_pred hcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
... .+++ -+.++| ++.--.+ +.+..++-..+.++|.|+||+|+.+
T Consensus 80 ~~~--------------~~d~-ii~V~D-----~t~~~~~---~~~~~~l~~~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 80 LKG--------------DADL-VILVAD-----SVNPEQS---LYLLLEILEMEKKVILAMTAIDEAK 124 (258)
T ss_dssp HHS--------------CCSE-EEEEEE-----TTSCHHH---HHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred hhc--------------CCCE-EEEEeC-----CCchhhH---HHHHHHHHhcCCCEEEEEECcCCCC
Confidence 110 1222 345567 3321112 2333344445889999999999864
No 73
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.75 E-value=7.1e-05 Score=71.82 Aligned_cols=30 Identities=20% Similarity=0.482 Sum_probs=25.8
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
...+|+|+|..++|||||+++|++..+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~ 36 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQ 36 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcc
Confidence 356899999999999999999999876433
No 74
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.75 E-value=4e-05 Score=76.00 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=22.3
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~ 77 (792)
...+|+|+|+.++|||||+++|++..+.+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~ 55 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSN 55 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCC
Confidence 35699999999999999999999987644433
No 75
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.74 E-value=0.00012 Score=69.34 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=24.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCcccc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~ 76 (792)
.+|+|+|..++|||||+++|++..+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~ 32 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENK 32 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 47999999999999999999998764433
No 76
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.74 E-value=7.2e-05 Score=73.30 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=60.9
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHh
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~ 126 (792)
..+|+|||+.++|||||+++|++..+.+....+.+.......+.. ....-...+.+.||... +..+.. ..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~--~~~~~~-------~~ 90 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQES--FRSITR-------SY 90 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGG--TSCCCH-------HH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCchh--hhhhHH-------HH
Confidence 358999999999999999999998875443332222111111111 10011234556777432 111100 01
Q ss_pred hcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hh-hHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LA-NSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~-~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
... .++ -+.++| ++.. +. ...++..++.....+...|.|+||.|+.+
T Consensus 91 ~~~---------------~d~-ii~v~d-----~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 91 YRG---------------AAG-ALLVYD-----ITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp HTT---------------CSE-EEEEEE-----TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred hcc---------------CCE-EEEEEE-----CCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 111 111 345567 2221 11 12456566666566889999999999964
No 77
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.74 E-value=0.00012 Score=72.06 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=64.0
Q ss_pred CCCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHH
Q 003841 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (792)
Q Consensus 44 ~i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~ 123 (792)
....++|+|||..++|||||+++|++..+.+ .....|.......+.... ..-...+.+.||.. ++..+....
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~~l~Dt~G~~--~~~~~~~~~---- 82 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVE-DYEPTKADSYRKKVVLDG-EEVQIDILDTAGQE--DYAAIRDNY---- 82 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCTTCCEEEEEEEEETT-EEEEEEEEECCCTT--CCHHHHHHH----
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEECC-EEEEEEEEcCCChh--hhHHHHHHH----
Confidence 4566899999999999999999999987633 322233322222222111 01123466778743 233322211
Q ss_pred HHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hh-hHHHHH-HHhhhCCCCCeEEEEeecCCCCC
Q 003841 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LA-NSDALQ-IAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~-~~~al~-la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
... .++ .+.++| ++.. +. ...++. +.+.....+.+.|.|+||.|+.+
T Consensus 83 ---~~~---------------~~~-~i~v~d-----~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 83 ---FRS---------------GEG-FLCVFS-----ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp ---HHH---------------CSE-EEEEEE-----TTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred ---Hhh---------------CCE-EEEEEE-----CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence 110 011 244556 2221 11 123333 33344456889999999999975
No 78
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.73 E-value=5.4e-05 Score=71.75 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=22.6
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCcccc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~ 76 (792)
..+|+|||+.++|||||+++|+|..+.+..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~ 31 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA 31 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC
Confidence 468999999999999999999998754443
No 79
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.73 E-value=0.00012 Score=73.16 Aligned_cols=117 Identities=14% Similarity=0.151 Sum_probs=62.8
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHh
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~ 126 (792)
..+|+|||+.++|||||+++|++..|.+....+.+.......+. .....-...+.+.||... +..+ +...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~--~~~~-------~~~~ 95 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE-INGEKVKLQIWDTAGQER--FRSI-------TQSY 95 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEE-ETTEEEEEEEEEECCSGG--GHHH-------HGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEE-ECCEEEEEEEEECCCcHH--HHHH-------HHHH
Confidence 46899999999999999999998876332222222211111111 111011234556777431 2111 1111
Q ss_pred hcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchh---hHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLA---NSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~---~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
... .++ -+.++| ++..-+ -..++..++...+.+...|.|+||.|+.+
T Consensus 96 ~~~---------------~d~-~i~v~D-----~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 96 YRS---------------ANA-LILTYD-----ITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp STT---------------CSE-EEEEEE-----TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred Hhc---------------CCE-EEEEEE-----CCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 111 111 344566 222111 13456666666667888999999999864
No 80
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.71 E-value=0.00011 Score=69.05 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
.+|+|+|..++|||||+++|++..+.+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~ 30 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVD 30 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc
Confidence 379999999999999999999987643
No 81
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.71 E-value=1.8e-05 Score=74.96 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=24.5
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
..+|+|+|..++|||||+++|++..+.+
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~ 32 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTK 32 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCC
Confidence 3589999999999999999999987643
No 82
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.70 E-value=6.2e-05 Score=74.33 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=28.5
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~T 81 (792)
...+|+|+|..++|||||+++|++..+.+....+.|
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~ 42 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG 42 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc
Confidence 346899999999999999999999987544443333
No 83
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.69 E-value=7.1e-05 Score=74.07 Aligned_cols=29 Identities=24% Similarity=0.499 Sum_probs=25.5
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
....+|+|||+.++|||||+++|++..+.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~ 50 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS 50 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence 35679999999999999999999999864
No 84
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.69 E-value=0.00011 Score=71.78 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=26.1
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCcccc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~ 76 (792)
...+|+|||..++|||||+++|++..+....
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~ 49 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT 49 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence 3468999999999999999999988764433
No 85
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.69 E-value=8.3e-05 Score=70.51 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=23.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
.+|+|+|..++|||||+++|++..+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~ 29 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFR 29 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 47999999999999999999998753
No 86
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.69 E-value=0.00016 Score=70.36 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=25.1
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
.-.+|+|||..++|||||+++|++..+.+
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~ 48 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVD 48 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCcc
Confidence 34589999999999999999999987643
No 87
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.68 E-value=9e-05 Score=83.02 Aligned_cols=136 Identities=19% Similarity=0.136 Sum_probs=68.3
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccC----CCCCcccEEEEEeeccCcccceeeccCCCccc-----cChhHH
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN----DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF-----YDFSEI 115 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~----~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~-----~d~~~i 115 (792)
-..|.|+|||..||||||||++|+|..+..... ...|+..+-+.+... ....+..+.+.+|... .++..+
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~-~l~~~ltv~D~~~~g~~~~~~~~~~~i 118 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQES-NVRLKLTIVSTVGFGDQINKEDSYKPI 118 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC---CEEEEEEEEEECCCC-CCHHHHSHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecC-ccccccchhhhhhhhhccccchhhhHH
Confidence 355779999999999999999999985432211 112332222222111 0001112223333321 123445
Q ss_pred HHHHHHHHHHhh----cCCC---CcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEee
Q 003841 116 RREIQAQTDKEA----GGNK---GVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIIT 188 (792)
Q Consensus 116 ~~~i~~~~~~~~----g~~~---~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlT 188 (792)
.+.+...+..+. +... .+-+..| ++.-+.|+| +..++...| +.+++.+. .+.++|.|+|
T Consensus 119 ~~~i~~q~~~~L~e~~~i~r~l~~~~d~rV-------h~~v~fI~d-----~~~~l~~~D-ieilk~L~-~~~~vI~Vi~ 184 (427)
T 2qag_B 119 VEFIDAQFEAYLQEELKIRRVLHTYHDSRI-------HVCLYFIAP-----TGHSLKSLD-LVTMKKLD-SKVNIIPIIA 184 (427)
T ss_dssp HHHHHHHHHHHHHHC--CCCCCCCSCC--C-------CEEEEEECC-----CC---CHHH-HHHHHHTC-SCSEEEEEES
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccccc-------cEEEEEEeC-----CCCCCCHHH-HHHHHHHh-hCCCEEEEEc
Confidence 555555444332 2111 1111111 111233445 555565555 67788887 7899999999
Q ss_pred cCCCCCC
Q 003841 189 KLDIMDR 195 (792)
Q Consensus 189 K~D~~~~ 195 (792)
|+|.+..
T Consensus 185 KtD~Lt~ 191 (427)
T 2qag_B 185 KADAISK 191 (427)
T ss_dssp CGGGSCH
T ss_pred chhccch
Confidence 9999964
No 88
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.68 E-value=0.00014 Score=76.11 Aligned_cols=59 Identities=29% Similarity=0.269 Sum_probs=41.1
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
..+.|+++|..|+|||||+++|+|..+ +.+. .++|.......+... .....+++.||..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~ 61 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYR---EKEFLVVDLPGIY 61 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEET---TEEEEEEECCCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEEC---CceEEEEeCCCcc
Confidence 467899999999999999999999976 5544 345655444443322 1224677888854
No 89
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.67 E-value=8.5e-05 Score=70.59 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=22.3
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~ 77 (792)
+.+|+|+|+.++|||||+++|+|..+-....
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~ 32 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE 32 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc
Confidence 4589999999999999999999876543333
No 90
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.67 E-value=0.00028 Score=79.05 Aligned_cols=138 Identities=15% Similarity=0.152 Sum_probs=64.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCCC-c-cc-EEEEEeec----cCcccceeeccCCCcccc-----ChhHHH
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT-R-RP-LVLQLLQT----KTDEEYGEFLHLPGKRFY-----DFSEIR 116 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~T-R-~P-~~l~l~~~----~~~~~~~~~~~~~g~~~~-----d~~~i~ 116 (792)
.|+|||+.|+||||||+.|+|..+.+.+.+..+ . .+ +....... .....+..+.+.+|.... .+..+.
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~ 112 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVI 112 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHH
Confidence 579999999999999999999976434432110 0 00 11111100 000012233445554321 123344
Q ss_pred HHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 117 REIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 117 ~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
+.+....+.+.....++... -+..|.+-.+.+.|-|. ...+...+ ..+.+.+.. +..+|.|+||+|++..
T Consensus 113 ~~i~~~~~~~l~qr~~IaRa----l~~d~~~~vlL~ldePt---~~~L~~~d-~~~lk~L~~-~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 113 DYIDSKFEDYLNAESRVNRR----QMPDNRVQCCLYFIAPS---GHGLKPLD-IEFMKRLHE-KVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHTTTSCC-CCC----CCCCC-CCEEEEECCC----CCSCCHHH-HHHHHHHTT-TSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHH----hccCCCeeEEEEEecCc---ccCCCHHH-HHHHHHHhc-cCcEEEEEEcccCccH
Confidence 44443333333222222211 12355553455566442 12222232 234445544 7899999999999864
No 91
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.66 E-value=0.00014 Score=76.80 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=40.3
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
.+.|++||.+|+|||||+++|+|..+..-...++|+.+....+.. ..-..+.++||..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~----~~~l~l~DtpG~~ 60 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK----NKDLEIQDLPGIY 60 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT----CTTEEEEECCCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec----CCeEEEEECCCcC
Confidence 468999999999999999999998643333345677665555432 1234567888853
No 92
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.66 E-value=0.00019 Score=67.80 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=23.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
.+|+|+|+.++|||||+++|++..+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~ 29 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV 29 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 47999999999999999999988763
No 93
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.65 E-value=0.00015 Score=70.04 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.2
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
....+|+|||+.++|||||+++|++..+.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~ 44 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFV 44 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 44568899999999999999999988763
No 94
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.65 E-value=3.3e-05 Score=86.62 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=66.6
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHH
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~ 123 (792)
-..+.|+|||..++|||||+++|+|..+.+.+. ..+|..+....+..... ....+++.||.. +|..+.......+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~l~liDTpG~~--d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI--GPVTLVDTPGLD--DVGELGRLRVEKA 107 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT--EEEEEEECSSTT--CCCTTCCCCHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC--CeEEEEECcCCC--cccchhHHHHHHH
Confidence 356799999999999999999999998643332 34566665555443321 134567888854 2322211000011
Q ss_pred HHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCCcc
Q 003841 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 197 (792)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~gt 197 (792)
...... .++ -|.++|. ...-....++..+++. +...|.|+||.|+.+...
T Consensus 108 ~~~l~~---------------aD~-vllVvD~-----~~~~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 108 RRVFYR---------------ADC-GILVTDS-----APTPYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp HHHHTS---------------CSE-EEEECSS-----SCCHHHHHHHHHHHHT---TCCEEEECCCCTTTTCCC
T ss_pred HHHHhc---------------CCE-EEEEEeC-----CChHHHHHHHHHHHhc---CCCEEEEEeCcCCCCccH
Confidence 111111 111 3455673 2222334566666665 678999999999987544
No 95
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.62 E-value=0.00012 Score=71.63 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=24.7
Q ss_pred CCCCCeEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 44 ~i~lPqIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
....++|+|||+.++|||||+++|++..|..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~ 44 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSS 44 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC---
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 3466799999999999999999999998643
No 96
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.62 E-value=0.00012 Score=72.33 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=59.1
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCC--CcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC--TRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~--TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~ 123 (792)
...+|+|||+.++|||||+++|++..|.+....+. +.....+.+. .......+.+.||... +..+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~l~i~Dt~G~~~--~~~~~~~----- 96 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVD---GERTVLQLWDTAGQER--FRSIAKS----- 96 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEET---TEEEEEEEEECTTCTT--CHHHHHH-----
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEEC---CEEEEEEEEECCCCcc--hhhhHHH-----
Confidence 45799999999999999999999987643322221 1111111111 1111234567777432 2222111
Q ss_pred HHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hh-hHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LA-NSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~-~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
.... .++ -+.++| ++.. +. ...++...+.....+..+|.|+||.|+.+
T Consensus 97 --~~~~---------------~d~-iilv~d-----~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 97 --YFRK---------------ADG-VLLLYD-----VTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp --HHHH---------------CSE-EEEEEE-----TTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred --HHhh---------------CCE-EEEEEE-----CCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 1110 011 344566 2221 11 12456666666666789999999999863
No 97
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.62 E-value=0.00033 Score=67.58 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=24.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
.+|+|+|+.++|||||+++|++..+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~ 32 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDE 32 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCC
Confidence 3799999999999999999999876433
No 98
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.61 E-value=0.00016 Score=71.72 Aligned_cols=118 Identities=15% Similarity=0.082 Sum_probs=60.7
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
...+|+|||+.++|||||+++|++..|......+.+.......+... .......+.+.+|... +..+. ..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~--~~~~~-------~~ 97 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ-GKRVKLQIWDTAGQER--FRTIT-------QS 97 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEET-TEEEEEEEECCTTCGG--GHHHH-------HH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEEC-CEEEEEEEEECCCcHh--HHHHH-------HH
Confidence 34689999999999999999999887633222222221111111111 0011234567777532 22221 11
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hh-hHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LA-NSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~-~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
+.... ++ -+.++| ++.. +. ...++...++..+.+...|.|+||.|+.+
T Consensus 98 ~~~~~---------------d~-iilv~D-----~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 98 YYRSA---------------NG-AILAYD-----ITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp HHTTC---------------SE-EEEEEE-----TTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHhhC---------------CE-EEEEEE-----CCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 11111 11 344566 2221 11 12455555655556789999999999965
No 99
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.61 E-value=0.00018 Score=67.98 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=24.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
.+|+|+|+.++|||||+++|++..+.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~ 33 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHE 33 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 579999999999999999999887643
No 100
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.61 E-value=0.00013 Score=70.24 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=23.9
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
.++|+|||+.++|||||+++|++..+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~ 32 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFV 32 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 468999999999999999999977653
No 101
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.58 E-value=8.5e-05 Score=81.04 Aligned_cols=41 Identities=27% Similarity=0.251 Sum_probs=31.2
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEE
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVL 87 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l 87 (792)
+|.|+|||..|+||||||++|++..+.......+|..|..-
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g 198 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG 198 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE
Confidence 68999999999999999999998863222223467777643
No 102
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.58 E-value=3.8e-05 Score=75.90 Aligned_cols=118 Identities=13% Similarity=0.062 Sum_probs=60.5
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
...+|+|+|..++|||||+++|++..+......+.|.......+.... ..-...+.+.||...+ ..+
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~--~~~---------- 98 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG-KTIKLQIWDTAGQERF--RTI---------- 98 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETT-EEEEEEEECCTTCTTC--CCC----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECC-EEEEEEEEECCCcHhH--HHH----------
Confidence 356999999999999999999999876433332333222212221110 0112234566663211 000
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCch---hhHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDL---ANSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl---~~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
.. ..+...++ -+.++| ++..- ....++.......+.+...|.|+||.|+.+
T Consensus 99 ----~~--------~~~~~~d~-~i~v~d-----~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 99 ----TS--------SYYRGAHG-IIVVYD-----VTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp ----SC--------C--CCCSE-EEECC------CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred ----HH--------HHhhcCCE-EEEEEE-----CCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 00 00112222 234456 33221 123456666666667889999999999975
No 103
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.56 E-value=0.00013 Score=80.21 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=59.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCC-------CCcccEEEEEeec-cC-cc--cceeeccCCCccc-----cC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-------CTRRPLVLQLLQT-KT-DE--EYGEFLHLPGKRF-----YD 111 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~-------~TR~P~~l~l~~~-~~-~~--~~~~~~~~~g~~~-----~d 111 (792)
..|+|||..++||||||++|.|...++.+.-. .|. .+..... .. .. ....+.+.||... ..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti---~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTV---QIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CE---EEEEEEEC----CEEEEEEEEC-------------
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCce---eEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 46899999999999999999987654433210 121 1111110 00 00 1123456677531 11
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCC
Q 003841 112 FSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 191 (792)
Q Consensus 112 ~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D 191 (792)
+..+...|......+.....++... .+....+ ++.++|+ .++...+...+ ..+.+.+. .+..+|.|+||+|
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~----~~~d~rv-~~~vy~I--~~~~~~l~~~d-~~~~~~l~-~~~piIlV~NK~D 185 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRR----HIIDNRV-HCCFYFI--SPFGHGLKPLD-VAFMKAIH-NKVNIVPVIAKAD 185 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-----CCCCCC-CEEEEEE--CSSSSSCCHHH-HHHHHHTC-S-SCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccc----cccCCce-EEEEEEE--ecCCCCcchhH-HHHHHHhc-cCCCEEEEEECCC
Confidence 2234444443322222111111110 1112222 4445552 23344444444 24445554 5788999999999
Q ss_pred CCCC
Q 003841 192 IMDR 195 (792)
Q Consensus 192 ~~~~ 195 (792)
+.+.
T Consensus 186 l~~~ 189 (361)
T 2qag_A 186 TLTL 189 (361)
T ss_dssp SSCH
T ss_pred CCCH
Confidence 9863
No 104
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.53 E-value=0.00024 Score=69.31 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=23.4
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
...+|+|||..++|||||+++|+|..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999999987
No 105
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.52 E-value=0.00021 Score=68.91 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=24.5
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.-.+|+|||..++|||||+++|++..+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~ 43 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV 43 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc
Confidence 467999999999999999999998765
No 106
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.52 E-value=0.00029 Score=68.87 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=24.4
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
...+|+|||..++|||||+++|++..+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~ 33 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTF 33 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCC
Confidence 456899999999999999999999866
No 107
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.52 E-value=0.00071 Score=65.69 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=26.2
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~ 77 (792)
..+|+|||..++|||||+++|++..+.+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~ 45 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELA 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCC
Confidence 4589999999999999999999987644433
No 108
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.50 E-value=0.00031 Score=69.88 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=24.9
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
..+.|+|||+.++|||||+++|++..|.+.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~ 35 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDT 35 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc
Confidence 457999999999999999999998876433
No 109
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.50 E-value=4.5e-05 Score=73.82 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=10.8
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
..+|+|||+.++|||||+++|++..+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~ 33 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAF 33 (183)
T ss_dssp EEEEEEECCCCC--------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 46899999999999999999998865
No 110
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.49 E-value=0.00062 Score=64.19 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=22.8
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~l 73 (792)
+|+|+|+.++|||||+++|++..|.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~ 26 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC
Confidence 6999999999999999999988763
No 111
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.46 E-value=0.00011 Score=72.91 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=23.7
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
.+|+|||+.++|||||+++|++..+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~ 51 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFP 51 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC
Confidence 48999999999999999999998763
No 112
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.46 E-value=0.00015 Score=69.49 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=24.7
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
...+|+|||+.++|||||+++|++..|.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~ 32 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG 32 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC
Confidence 3468999999999999999999998763
No 113
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.46 E-value=0.00084 Score=64.97 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=23.9
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
...+|+|+|+.++|||||+++|++..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999999886
No 114
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.45 E-value=0.00068 Score=66.14 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.7
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
.+|+|||..++|||||+++|++..+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~ 48 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFN 48 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 58999999999999999999988763
No 115
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00018 Score=84.43 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.9
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCC
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-....|+|||..++|||||+++|++..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~ 191 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDL 191 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhc
Confidence 346799999999999999999999774
No 116
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00021 Score=72.10 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=59.1
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
...+|+|||+.++|||||+++|++..|......+.+.......+... .......+.+.||... +..+ +..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~--~~~~-------~~~ 81 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIE-GKRIKAQIWDTAGQER--YRAI-------TSA 81 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEET-TEEEEEEEECCTTTTT--TTCC-------CGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-CEEEEEEEEECCCccc--hhhh-------HHH
Confidence 35699999999999999999999987744433332222111111111 0011234556676321 1110 000
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchh---hHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLA---NSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~---~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
+ +. ..++ -+.++| ++.... ...++..++...+.+...|.|+||.|+.+
T Consensus 82 ~------~~---------~~d~-vilV~D-----~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 82 Y------YR---------GAVG-ALIVYD-----ISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp G------TT---------TCCE-EEEEEC------CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred H------hc---------cCCE-EEEEEe-----CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 0 10 1111 344566 322211 12345556665566788999999999974
No 117
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.41 E-value=9.1e-05 Score=73.73 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=23.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
.+|+|||+.++|||||+++|++..+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~ 51 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFP 51 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 58999999999999999999998763
No 118
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=0.0007 Score=66.10 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=62.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHhh
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~ 127 (792)
.+|+|+|+.++|||||+++|++..| +......+.......+.... ..-...+.+.||... +..+. ...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~-~~~~~~i~D~~G~~~--~~~~~-------~~~- 86 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGG-KQYLLGLYDTAGQED--YDRLR-------PLS- 86 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSS-CEEEEEEECCCCSSS--STTTG-------GGG-
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECC-EEEEEEEEECCCCcc--hhHHH-------HHh-
Confidence 4899999999999999999998875 33322233333322222110 011224556777432 11110 011
Q ss_pred cCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hhhH--HHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LANS--DALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~~~--~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
+ ...++ -+.++| ++.. +.+. .++..+++..+ +...|.|+||.|+.+.
T Consensus 87 -----~---------~~~d~-~i~v~d-----~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 87 -----Y---------PMTDV-FLICFS-----VVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp -----C---------TTCSE-EEEEEE-----TTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTC
T ss_pred -----c---------CCCCE-EEEEEE-----CCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 1 11122 344567 3322 2222 35555665544 6789999999999864
No 119
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.40 E-value=0.00065 Score=67.13 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.8
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
...+|+|||+.++|||||+++|+|..+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~ 48 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQG 48 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEEC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccC
Confidence 457999999999999999999987644
No 120
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.39 E-value=0.00072 Score=64.07 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=23.9
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
-.+|+|+|+.++|||||+++|++..+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~ 32 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEV 32 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999998876
No 121
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.38 E-value=0.00051 Score=68.01 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=23.7
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
..-.+|+|||+.++|||||+++|++..+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~ 50 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 50 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4556999999999999999999998865
No 122
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.38 E-value=0.00015 Score=82.68 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.1
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
-..-.|+|||..++|||||+++|++.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 35668999999999999999999876
No 123
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.36 E-value=0.0011 Score=76.19 Aligned_cols=29 Identities=31% Similarity=0.633 Sum_probs=23.7
Q ss_pred CCCCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 44 TIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 44 ~i~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
...-.+|++||..|+|||||+++|+|..|
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~ 66 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETF 66 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC---
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45567999999999999999999999876
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.33 E-value=0.0013 Score=65.43 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=26.3
Q ss_pred CCCCCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 44 ~i~lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
.-..|.|+|+|..++|||||+++|++..+.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~ 38 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVR 38 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 346799999999999999999999998763
No 125
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.33 E-value=0.00016 Score=81.44 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.9
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
....|++||..++|||||+++|++..
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~ 41 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLT 41 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999997653
No 126
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.33 E-value=0.00061 Score=65.53 Aligned_cols=115 Identities=16% Similarity=0.095 Sum_probs=61.3
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHhh
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~ 127 (792)
.+|+|+|..++|||||+++|++..+..... ..+.......+.... ..-...+.+.||... +..+ +...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~--~~~~-------~~~~- 73 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYI-PTVFDNYSANVMVDG-KPVNLGLWDTAGQED--YDRL-------RPLS- 73 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSSCC-CCSCCEEEEEEEETT-EEEEEEEECCCCSGG--GTTT-------GGGG-
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCcC-CcccceeEEEEEECC-EEEEEEEEECCCCHh--HHHH-------HHHh-
Confidence 479999999999999999999876633222 222221111211111 011123557777532 1110 0000
Q ss_pred cCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hhhH--HHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LANS--DALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~~~--~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
+ ...++ -+.++| ++.. +... .++...++..+ +...|.|+||.|+.+.
T Consensus 74 -----~---------~~~d~-~i~v~d-----~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 74 -----Y---------PQTDV-SLICFS-----LVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDD 124 (186)
T ss_dssp -----C---------TTCSE-EEEEEE-----TTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTC
T ss_pred -----c---------cCCcE-EEEEEE-----CCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEccccccc
Confidence 1 11122 345567 3322 2222 35555666555 7889999999999864
No 127
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.32 E-value=0.00039 Score=68.26 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=25.6
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
...+|+|+|+.++|||||+++|++..+.+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~ 55 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW 55 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc
Confidence 45699999999999999999999987643
No 128
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.30 E-value=0.0008 Score=65.39 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=25.1
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
...+|+|||..++|||||+++|++..+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~ 42 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV 42 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4579999999999999999999988764
No 129
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.30 E-value=0.0011 Score=65.29 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.8
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
-...+|+|||+.++|||||++.+.|.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc
Confidence 35679999999999999999999996
No 130
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.29 E-value=0.00011 Score=84.75 Aligned_cols=115 Identities=22% Similarity=0.282 Sum_probs=64.8
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
..|.|+|+|..++||||||++|++..+.....++.|+......+... ......|++.||.. +|...+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~--~g~~i~~iDTPGhe--~f~~~~--------- 69 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP--SGEKITFLDTPGHA--AFSAMR--------- 69 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS--CSSCCBCEECSSSC--CTTTSB---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC--CCCEEEEEECCChH--HHHHHH---------
Confidence 35899999999999999999999887644444555553221111110 11123466777742 121110
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchh--hHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLA--NSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~--~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
. .++ ...++ -+.+|| ++.... +.+.+.+++ ..+.+.|.|+||+|+.+.
T Consensus 70 --~--~~~---------~~aD~-vILVVD-----a~dg~~~qt~e~l~~~~---~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 70 --A--RGT---------QVTDI-VILVVA-----ADDGVMKQTVESIQHAK---DAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp --B--SSS---------BSBSS-CEEECB-----SSSCCCHHHHHHHHHHH---TTTCCEEECCBSGGGTTT
T ss_pred --H--HHH---------ccCCE-EEEEEE-----CCCCccHHHHHHHHHHH---HcCCcEEEEEeccccccc
Confidence 0 011 11222 345566 444332 233444444 456789999999999753
No 131
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.27 E-value=0.00022 Score=82.18 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.4
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
..+.|+|||..++|||||+|+|++.
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~ 36 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLF 36 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhh
Confidence 4579999999999999999999754
No 132
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.27 E-value=0.0011 Score=65.21 Aligned_cols=118 Identities=12% Similarity=0.058 Sum_probs=58.8
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHH
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~ 124 (792)
-...+|+|||+.++|||||+++|++..| +.....+|+......+.... ..-...+.+.+|...+ ..+. .
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~--~~~~-------~ 86 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDG-RPVRLQLCDTAGQDEF--DKLR-------P 86 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETT-EEEEEEEEECCCSTTC--SSSG-------G
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEECC-EEEEEEEEECCCCHHH--HHHh-------H
Confidence 3457999999999999999999999875 33332334333322222111 0111235567774321 1110 0
Q ss_pred HhhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hhhH--HHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LANS--DALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~~~--~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
.... ..++ -+.++| ++.. +.+. .++...+...+ +.+.|.|+||.|+.+.
T Consensus 87 ~~~~---------------~~~~-~i~v~d-----~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 87 LCYT---------------NTDI-FLLCFS-----VVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLRED 139 (201)
T ss_dssp GGGT---------------TCSE-EEEEEE-----TTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGC
T ss_pred hhcC---------------CCcE-EEEEEE-----CCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhc
Confidence 1111 1112 345567 2222 1221 34555555544 7889999999999764
No 133
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.27 E-value=0.00068 Score=65.64 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=24.1
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
..+|+|||..++|||||+++|++..+
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~ 46 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV 46 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999876
No 134
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.26 E-value=0.00096 Score=64.85 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=24.9
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
...+|+|||+.++|||||+++|++..+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~ 48 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV 48 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 4579999999999999999999988763
No 135
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.23 E-value=0.00078 Score=64.59 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=24.8
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCcc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lP 74 (792)
.-+|+|||+.++|||||++.+++..|.+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~ 34 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV 34 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 3589999999999999999999987744
No 136
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.20 E-value=0.00087 Score=65.51 Aligned_cols=27 Identities=22% Similarity=0.505 Sum_probs=24.1
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
.-+|+|||+.++|||||+++|++..|.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~~ 47 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRFI 47 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCCC
Confidence 348999999999999999999998763
No 137
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.17 E-value=0.0012 Score=64.90 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=24.8
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
.-.+|+|||+.++|||||+++|++..+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~ 55 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV 55 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc
Confidence 4468999999999999999999988763
No 138
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.17 E-value=0.0019 Score=68.02 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=22.1
Q ss_pred eEEEEccCCCchhHHHHHHhCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.|+|||..||||||||++|+|...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999853
No 139
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.15 E-value=0.0025 Score=62.42 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=23.5
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
..-.+|+|||+.++|||||+++|++..+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~ 48 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRL 48 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456999999999999999999998875
No 140
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.13 E-value=0.00084 Score=65.65 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=24.5
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
...+|+|||+.++|||||+++|++..+
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC
Confidence 446899999999999999999999876
No 141
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.13 E-value=0.00035 Score=67.12 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=24.4
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
...+|+|||+.++|||||++++++..|
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~ 33 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF 33 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999998875
No 142
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.12 E-value=0.00075 Score=77.82 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=22.4
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
....|+|||..++|||||+++|++.
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCChHHHHHHHHHhh
Confidence 3478999999999999999999865
No 143
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.12 E-value=0.0006 Score=68.29 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=21.6
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
-.+|+|||+.++|||||+++|++..+
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~ 59 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF 59 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC---
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC
Confidence 35899999999999999999999876
No 144
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.11 E-value=0.0024 Score=62.01 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=25.1
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
-..++|+|||+.++|||||+++|++..+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~ 41 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI 41 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3568999999999999999999999864
No 145
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.10 E-value=0.00011 Score=85.92 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
..|+|||..++|||||+++|++.
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999765
No 146
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.08 E-value=0.00065 Score=66.42 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=25.1
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
...-+|+|||+.++|||||++.+++..|.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~ 46 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYV 46 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34458999999999999999999998763
No 147
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.07 E-value=0.00037 Score=69.27 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=24.3
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
..--+|+|||..++|||||++++++..+.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~ 56 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP 56 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC
Confidence 34569999999999999999999987653
No 148
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.06 E-value=0.0011 Score=65.73 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=62.3
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
...+|+|+|+.++|||||+++|++..| +......+.......+.... ..-...+.+.||... +..+. ..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~--~~~~~-------~~ 76 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDG-QIVNLGLWDTAGQED--YSRLR-------PL 76 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSS-CEEEEEEECCCCCCC--CCC---------CG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECC-EEEEEEEEECCCcHH--HHHHH-------Hh
Confidence 346899999999999999999998876 33322223333222221111 111234556677432 11111 00
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hhh--HHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LAN--SDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~~--~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
. + ...++ -+.++| ++.. +.+ ..++..++...+ +...|.|+||.|+.+.
T Consensus 77 ~------~---------~~~d~-~ilv~d-----~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 77 S------Y---------RGADI-FVLAFS-----LISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp G------G---------TTCSE-EEEEEE-----TTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred h------c---------cCCCE-EEEEEE-----CCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhC
Confidence 1 1 11122 344566 2221 222 135566666554 6889999999998753
No 149
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.05 E-value=0.00088 Score=72.40 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=59.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHhhc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g 128 (792)
+|+|||..++||||||++|++..|.. . ..|+......+... .....+.+.||... |..+.. ....
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~~~-~--~pT~~~~~~~~~~~---~~~l~i~Dt~G~~~--~~~~~~-------~~~~ 231 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVEYK---NISFTVWDVGGQDK--IRPLWR-------HYFQ 231 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCCEE-E--EEETTEEEEEEEET---TEEEEEEECC-------CCSHH-------HHHT
T ss_pred eEEEECCCCccHHHHHHHHhCCCCCC-c--ccccceEEEEEecC---cEEEEEEECCCCHh--HHHHHH-------HHhc
Confidence 79999999999999999999987632 2 23444332222221 12234567777321 111111 1111
Q ss_pred CCCCcCcCceEEEEecCCcceeEEeecCCCCCCCchhh--HHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSDLAN--SDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~Dl~~--~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
. .++ -+.++|+- . ...+.. ..+..+.+.....+..+|.|+||.|+.+.
T Consensus 232 ~---------------ad~-vilV~D~~--~-~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 232 N---------------TQG-LIFVVDSN--D-RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp T---------------EEE-EEEEEETT--C-SSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred c---------------CCE-EEEEEECC--c-hHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 0 011 34556721 0 111211 22344555555557889999999999864
No 150
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.05 E-value=0.0017 Score=65.66 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.2
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
...+|||||+.++|||||++.++|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 44689999999999999999999854
No 151
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.04 E-value=0.0016 Score=69.61 Aligned_cols=57 Identities=16% Similarity=0.025 Sum_probs=36.3
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccc--cCCCCCcccEEEEEeeccCcccceeeccCCCc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPR--GNDICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr--~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~ 107 (792)
.+|+++|+.++|||||+++|++... +. ..-.+|+......+.... .-...+.+.||.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~-~~~~~~~~~Ti~~~~~~~~~~~--~~~l~i~Dt~G~ 62 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYS-AFDTRRLGATIDVEHSHLRFLG--NMTLNLWDCGGQ 62 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCC-TGGGGGCCCCCSEEEEEEEETT--TEEEEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CccccCcCCccceEEEEEEeCC--ceEEEEEECCCc
Confidence 4799999999999999999988732 22 233566655544433211 122345677774
No 152
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.03 E-value=0.001 Score=74.71 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=23.1
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
....|+|||..++|||||+++|++..
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhc
Confidence 45689999999999999999998764
No 153
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.03 E-value=0.00094 Score=66.05 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
-..|++||..||||||||++|+|..+
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~ 51 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKS 51 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45799999999999999999999874
No 154
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.00041 Score=76.55 Aligned_cols=58 Identities=26% Similarity=0.287 Sum_probs=45.1
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~ 107 (792)
.++|++||.+|+|||||+|+|+|.......-..|||.|+.-.+... +....++++||.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~---~~~i~l~D~pGl 129 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK---GAKIQMLDLPGI 129 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEET---TEEEEEEECGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeC---CcEEEEEeCCCc
Confidence 5799999999999999999999987544445689999986555442 244567888874
No 155
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.99 E-value=0.0014 Score=64.67 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=24.4
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
..+|+|||+.+|||||||+.|+|..|.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~ 31 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFN 31 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 468999999999999999999999764
No 156
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.99 E-value=0.0008 Score=76.13 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.2
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
....|++||..++|||||+++|++.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999864
No 157
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.99 E-value=0.0022 Score=64.23 Aligned_cols=29 Identities=21% Similarity=0.396 Sum_probs=24.7
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
....+|+|||+.++|||||+++|++..|.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~ 53 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP 53 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 34568999999999999999999998763
No 158
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.97 E-value=0.0016 Score=63.10 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=23.9
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
..+|+|||+.++|||||+++|++..|
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999876
No 159
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.96 E-value=0.00043 Score=69.44 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=22.4
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
....+|+|||..++|||||++++++..+
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3456899999999999999999554433
No 160
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.93 E-value=0.00049 Score=81.92 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=21.9
Q ss_pred CCCeEEEEccCCCchhHHHHHHhC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G 69 (792)
..+.|+|||..++|||||+|+|++
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999994
No 161
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.92 E-value=0.0018 Score=64.60 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=24.1
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
..+|+|||+.++|||||+++|++..|
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999876
No 162
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.91 E-value=0.00036 Score=81.58 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=24.3
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
..|.|+|+|..++|||||+++|+|..+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v 30 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAV 30 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC
Confidence 568999999999999999999998743
No 163
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.90 E-value=0.0028 Score=67.61 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=20.1
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
.|+|||+.++||||||+.|.|....|.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~ 46 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPE 46 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCC
Confidence 679999999999999999999743344
No 164
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.90 E-value=0.0039 Score=70.80 Aligned_cols=113 Identities=14% Similarity=0.071 Sum_probs=64.3
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHh
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~ 126 (792)
..+|+|||+.|+||||||++|++..+. ....|+....-.+... .....+.+.+|... +..+ +...
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~~---~~~~T~~~~~~~~~~~---~~~~~l~Dt~G~~~--~~~~-------~~~~ 386 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQSV---TTIPTVGFNVETVTYK---NVKFNVWDVGGQDK--IRPL-------WRHY 386 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC---CCCCCSSEEEEEEESS---SCEEEEEEECCCGG--GSGG-------GGGG
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC---CcCCccceeEEEEEeC---CEEEEEEECCCcHH--HHHH-------HHHH
Confidence 458999999999999999999998752 2244665554443321 12234567777432 2121 1111
Q ss_pred hcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hhhH--HHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LANS--DALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~~~--~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
.. ..++ -|.++| +... +... ....+.+.....+...|.|+||.|+.+.
T Consensus 387 ~~---------------~ad~-~i~V~D-----~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 387 YT---------------GTQG-LIFVVD-----CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp GT---------------TCCE-EEEEEE-----TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred hc---------------cCCE-EEEEEE-----CcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 11 1122 345677 3322 2211 2233444444468899999999999753
No 165
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.85 E-value=0.00077 Score=74.86 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=24.1
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
....|+++|..++|||||+++|+|...
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc
Confidence 456899999999999999999999753
No 166
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.84 E-value=0.0019 Score=71.76 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.5
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
....|+++|..++|||||+++|++.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999973
No 167
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.82 E-value=0.008 Score=58.05 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=22.1
Q ss_pred CCeEEEEccCCCchhHHHHHHhCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
..+|+|||+.++|||||++.|.|.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999887
No 168
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.78 E-value=0.0034 Score=69.01 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=35.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC-----Ccc-ccC-CCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD-----FLP-RGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~-----~lP-r~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
..|++||.+|+|||||+|+|+|.. ..+ .+. ..+|+.+..+.+.. ...+++.||..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~------~~~liDtPG~~ 222 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE------ESSLYDTPGII 222 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS------SCEEEECCCBC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC------CeEEEeCCCcC
Confidence 479999999999999999999862 122 222 25677665544321 24678999864
No 169
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.77 E-value=0.0022 Score=63.17 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=22.0
Q ss_pred CCeEEEEccCCCchhHHHHHHhCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
..+|+|||+.|+|||||++.++|.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999974
No 170
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.75 E-value=0.0023 Score=72.85 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=23.7
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
.-+.|+++|..++|||||+++|+|..
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~ 43 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIA 43 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCC
Confidence 44689999999999999999999986
No 171
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.70 E-value=0.004 Score=63.13 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~l 73 (792)
+|||||+.++||||||+.+++-.|.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f~ 39 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSFD 39 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCcCHHHHHHHHHhCCCC
Confidence 7999999999999999999987763
No 172
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.68 E-value=0.00081 Score=76.92 Aligned_cols=113 Identities=20% Similarity=0.304 Sum_probs=61.5
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
..|.|+|+|..++|||||+++|.+..+.....++.|.......+.. ......|++.||.. +|...+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~---~~~~i~~iDTPGhe--~f~~~~--------- 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET---ENGMITFLDTPGHA--AFTSMR--------- 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT---TSSCCCEECCCTTT--CCTTSB---------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE---CCEEEEEEECCCcH--HHHHHH---------
Confidence 4689999999999999999999886542222233332211111100 11223466777743 221110
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hhhHHHHHHHhhhCCCCCeEEEEeecCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LANSDALQIAGIADPDGYRTIGIITKLDIMD 194 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~~~~al~la~~vDp~g~RTIGVlTK~D~~~ 194 (792)
..+. ...++ -+.+|| ++.. ..+-+.+.+++. .+.+.|.|+||+|+.+
T Consensus 69 ----~~~~---------~~aD~-aILVVd-----a~~g~~~qT~e~l~~~~~---~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 69 ----ARGA---------QATDI-VVLVVA-----ADDGVMPQTIEAIQHAKA---AQVPVVVAVNKIDKPE 117 (501)
T ss_dssp ----CSSS---------BSCSS-EEEEEE-----TTTBSCTTTHHHHHHHHH---TTCCEEEEEECSSSST
T ss_pred ----HHHH---------hhCCE-EEEEee-----cccCccHHHHHHHHHHHh---cCceEEEEEEeccccc
Confidence 0111 11122 345566 3332 233455566654 4677999999999975
No 173
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.65 E-value=0.0039 Score=74.25 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=22.0
Q ss_pred CCCeEEEEccCCCchhHHHHHHhC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G 69 (792)
..+.|+|||..++|||||+++|+.
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999964
No 174
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.67 E-value=0.0003 Score=69.60 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=24.1
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
.-.+|+|+|..++|||||+++|++..+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~ 55 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF 55 (204)
Confidence 446899999999999999999998765
No 175
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.64 E-value=0.0016 Score=71.76 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=20.5
Q ss_pred CCeEEEEccCCCchhHHHHHHh
Q 003841 47 LPQVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~ 68 (792)
.+.|++||..++|||||+++|+
T Consensus 21 m~~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 21 MANVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEEEESTTSSHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4489999999999999999998
No 176
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.59 E-value=0.0018 Score=75.71 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=19.6
Q ss_pred CCeEEEEccCCCchhHHHHHHhCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
++.|++||..++|||||+++|++.
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~ 29 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEY 29 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 568999999999999999999753
No 177
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.56 E-value=0.0044 Score=69.66 Aligned_cols=39 Identities=23% Similarity=0.066 Sum_probs=29.8
Q ss_pred HHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhC
Q 003841 167 SDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLG 205 (792)
Q Consensus 167 ~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~ 205 (792)
+++...|+.+++...-+..|+||+|...++..+..+..-
T Consensus 226 q~a~~~a~~f~~~~~i~gVIlTKlD~~~~gG~~ls~~~~ 264 (443)
T 3dm5_A 226 QQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAA 264 (443)
T ss_dssp GGHHHHHHHHHHSCTTEEEEEECCSSCSSHHHHHHHHHT
T ss_pred hhHHHHHHHHHhhCCCeEEEEECCCCcccccHHHHHHHH
Confidence 566777888887777788899999998887666666543
No 178
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.54 E-value=0.0017 Score=77.34 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=21.4
Q ss_pred CCCeEEEEccCCCchhHHHHHHh
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~ 68 (792)
..+.|+|||..++|||||+++|+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll 33 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERIL 33 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 179
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.51 E-value=0.0039 Score=69.23 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.5
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
....|+++|..++|||||+++|+|.
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~ 33 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGV 33 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999986
No 180
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.49 E-value=0.0053 Score=64.99 Aligned_cols=117 Identities=16% Similarity=0.083 Sum_probs=62.8
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHH
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~ 125 (792)
...+|+|+|..++|||||++.+++..+. ......|+......+.... ..-...+.+.+|... +..+ +..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~--~~~~-------~~~ 222 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDG-KPVNLGLWDTAGLED--YDRL-------RPL 222 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC-CSCCCCSEEEEEEEEEETT-EEEEEEEEEECCCGG--GTTT-------GGG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC-cccCCcccceeEEEEEECC-EEEEEEEEeCCCchh--hhHH-------HHH
Confidence 4579999999999999999999987663 3332334433322222111 011122556677432 1111 000
Q ss_pred hhcCCCCcCcCceEEEEecCCcceeEEeecCCCCCCCc--hhhH--HHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPVTPANSD--LANS--DALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtlVDLPV~~a~~D--l~~~--~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
. + ...++ -+.++| ++.. +.+. .++...+...+ +...|.|+||+|+.+.
T Consensus 223 ~------~---------~~~d~-~i~v~d-----~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 223 S------Y---------PQTDV-FLICFS-----LVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDD 274 (332)
T ss_dssp G------C---------TTCSE-EEEEEE-----TTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTC
T ss_pred h------c---------cCCCE-EEEEEe-----CCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccc
Confidence 1 1 11122 344567 3332 2221 24455555544 7899999999999764
No 181
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=96.44 E-value=0.0019 Score=75.44 Aligned_cols=24 Identities=13% Similarity=0.369 Sum_probs=17.6
Q ss_pred CCeEEEEccCCCchhHHHHHHhCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
+..|+|||..++|||||+++|++.
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~ 27 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQI 27 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999753
No 182
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.35 E-value=0.0018 Score=72.77 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.0
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
....|+++|..++|||||+++|++.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999854
No 183
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.31 E-value=0.0047 Score=65.34 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=34.6
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccC-CCCCcccEEEEEeeccCcccceeeccCCCcccc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFY 110 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~ 110 (792)
-..|+|||.+|+|||||+|+|+|.....++. ..+||.+..+.+ .....+++.||....
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~------~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV------GKELELLDTPGILWP 178 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE------TTTEEEEECCCCCCS
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe------CCCEEEEECcCcCCC
Confidence 4589999999999999999999987544544 246775533322 123457788886543
No 184
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.24 E-value=0.006 Score=67.75 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
....|+|+|..++|||||+++|+|.
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~ 31 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGV 31 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999987
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.24 E-value=0.0072 Score=71.51 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=22.8
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
....|+|||..++|||||+++|+|..
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhc
Confidence 35689999999999999999999653
No 186
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.10 E-value=0.0041 Score=68.86 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.6
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|+++|..++|||||+++|++.
T Consensus 5 ~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 5 NVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHhCh
Confidence 6999999999999999999974
No 187
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=95.97 E-value=0.0017 Score=73.71 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.6
Q ss_pred CCCeEEEEccCCCchhHHHHHHhC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G 69 (792)
....|++||..++|||||+++|++
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CeeEEEEEECCCCCHHHHHHHHHH
Confidence 456899999999999999999974
No 188
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.90 E-value=0.025 Score=64.38 Aligned_cols=38 Identities=21% Similarity=0.005 Sum_probs=28.2
Q ss_pred HHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHh
Q 003841 167 SDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLL 204 (792)
Q Consensus 167 ~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~ 204 (792)
++++..++.+...-.-|..|+||.|-..+|..+..++.
T Consensus 425 q~al~~ak~f~~~~~itgvIlTKLD~takgG~~lsi~~ 462 (503)
T 2yhs_A 425 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVAD 462 (503)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECGGGCSCCTHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEEcCCCcccccHHHHHHH
Confidence 56677777776555567889999998777777777764
No 189
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.78 E-value=0.085 Score=57.31 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.5
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
..+.|+|+|..|+||||++++|++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999754
No 190
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=95.76 E-value=0.0056 Score=74.37 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.8
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
....|+|||..++|||||+++|++.
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHh
Confidence 5679999999999999999999865
No 191
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.69 E-value=0.0091 Score=69.53 Aligned_cols=64 Identities=22% Similarity=0.220 Sum_probs=39.0
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCCCCc-cccC--CCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGRDFL-PRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~~~l-Pr~~--~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
-..+.|+|||.+|+|||||||+|+|.... +.+. ..||+..................+++.||..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 35678999999999999999999998631 3333 2345532211110000112334677888854
No 192
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=95.42 E-value=0.0085 Score=74.30 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.9
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
-....|+|||..++|||||+++|++.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 34568999999999999999999874
No 193
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.31 E-value=0.018 Score=63.23 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=39.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCC-----CCccccC-CCCCcccEEEEEeeccCcccceeeccCCCcc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR-----DFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~-----~~lPr~~-~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~ 108 (792)
..|++||..|+|||||+|+|+|. .....+. ..+|+.+..+.+. .-..+++.||..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~------~~~~liDtPG~~ 223 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE------SGATLYDTPGII 223 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS------TTCEEEECCSCC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC------CCeEEEeCCCcC
Confidence 47999999999999999999987 3333333 3578766554432 124678899864
No 194
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.23 E-value=0.063 Score=61.32 Aligned_cols=30 Identities=27% Similarity=0.261 Sum_probs=24.5
Q ss_pred CeEEEEccCCCchhHHHHHHh------CCCCccccC
Q 003841 48 PQVAVVGSQSSGKSSVLEALV------GRDFLPRGN 77 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~------G~~~lPr~~ 77 (792)
..|+|||.+|+||||++++|+ |.+.+.++.
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 379999999999999999999 776544433
No 195
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.16 E-value=0.0056 Score=72.11 Aligned_cols=38 Identities=18% Similarity=0.108 Sum_probs=25.5
Q ss_pred CCCCCCchhhHHHHHHHhhhCCCCCeEEEEeecCCCCCC
Q 003841 157 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 195 (792)
Q Consensus 157 V~~a~~Dl~~~~al~la~~vDp~g~RTIGVlTK~D~~~~ 195 (792)
|+.|...+..|. ..+.+.++..|.+.|.++||+|+...
T Consensus 97 VVDa~~GV~~qT-~~v~~~a~~~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 97 LISAKDGVQAQT-RILFHALRKMGIPTIFFINKIDQNGI 134 (638)
T ss_dssp CEESSCTTCSHH-HHHHHHHHHHTCSCEECCEECCSSSC
T ss_pred EEeCCCCCcHHH-HHHHHHHHHcCCCeEEEEeccccccC
Confidence 556777766543 33444444457888999999998754
No 196
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.16 E-value=0.0086 Score=66.47 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=22.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCcccc-CCCCCcccEEE
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVL 87 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~-~~~~TR~P~~l 87 (792)
+|++||..|+|||||+|+|+|... ..+ ...||+.|..-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~-~~~~~p~tT~~~~~g 40 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANVG 40 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-cccCCCCcccCCceE
Confidence 699999999999999999999873 332 23578877644
No 197
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.00 E-value=0.019 Score=56.08 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=24.5
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCc
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~l 73 (792)
...|+|||+.+|||||||+.|+|..+.
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 468999999999999999999999763
No 198
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.98 E-value=0.012 Score=64.55 Aligned_cols=37 Identities=27% Similarity=0.440 Sum_probs=26.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCCCCccc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P 84 (792)
.+|++||.+|+|||||+++|+|..+.......||+.|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p 39 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP 39 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc
Confidence 4799999999999999999999874222334567755
No 199
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=94.90 E-value=0.013 Score=67.78 Aligned_cols=115 Identities=14% Similarity=0.190 Sum_probs=60.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHhh
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~ 127 (792)
--|+|||--.+|||||.|+|+-..-.....|.+ +. +. .-+....|+.++.++ |
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V---------------~~-~~---~~~~~~~D~~~~Ere------R-- 84 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSV---------------KA-RK---AARHATSDWMAMERE------R-- 84 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHH---------------HH-C----------------------------
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCccccccee---------------ec-Cc---cccccccCChHHHHH------C--
Confidence 469999999999999999996221000000000 00 00 001123344332211 1
Q ss_pred cCCCCcCcCceEEEEecCCcceeEEeecC---------------------CCCCCCchhhHHHHHHHhhhCCCCCeEEEE
Q 003841 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLP---------------------VTPANSDLANSDALQIAGIADPDGYRTIGI 186 (792)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtlVDLP---------------------V~~a~~Dl~~~~al~la~~vDp~g~RTIGV 186 (792)
+=+|....+.++. .+. .+.|||+| |+.|...+..|. ..+-+.++..+.++|.+
T Consensus 85 --GITI~s~~~~~~~--~~~-~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~~~lp~i~f 158 (548)
T 3vqt_A 85 --GISVTTSVMQFPY--RDR-VVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRMRATPVMTF 158 (548)
T ss_dssp -----CTTTEEEEEE--TTE-EEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHHTTCCEEEE
T ss_pred --CCcEeeceEEEEE--CCE-EEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHHhCCceEEE
Confidence 1124444555543 343 68899999 667777766554 34444555568999999
Q ss_pred eecCCCCCC
Q 003841 187 ITKLDIMDR 195 (792)
Q Consensus 187 lTK~D~~~~ 195 (792)
+||+|+...
T Consensus 159 INK~Dr~~a 167 (548)
T 3vqt_A 159 VNKMDREAL 167 (548)
T ss_dssp EECTTSCCC
T ss_pred Eecccchhc
Confidence 999999754
No 200
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.82 E-value=0.013 Score=56.65 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
-+|+|||+.++|||||++.|+|.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999995
No 201
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.65 E-value=0.022 Score=63.12 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=31.2
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCC-ccccCCCCCcccEE
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDF-LPRGNDICTRRPLV 86 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~-lPr~~~~~TR~P~~ 86 (792)
-..|++||..|+|||||+++|+|..+ ....-..||+.|..
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~ 60 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEE 60 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeeccee
Confidence 46899999999999999999999865 22333467877653
No 202
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.51 E-value=0.022 Score=59.55 Aligned_cols=29 Identities=31% Similarity=0.576 Sum_probs=23.7
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCcccc
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~ 76 (792)
..|+|||.+|+|||||+|+|+|......+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 79999999999999999999998754333
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=94.49 E-value=0.019 Score=68.41 Aligned_cols=114 Identities=12% Similarity=0.162 Sum_probs=61.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEEEEEeeccCcccceeeccCCCccccChhHHHHHHHHHHHHhh
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~ 127 (792)
--|+|||--.+|||||.|+|+-.. |. ++..-.+ + .|..+.|+.+..+ +|
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~------g~-i~~~g~v--------~--------~~~~~~D~~~~E~------eR-- 62 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYT------GV-NHKLGEV--------H--------DGAATTDWMVQEQ------ER-- 62 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHH------HH-HHHC-------------------------------------------
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhc------CC-CCcCcee--------c--------CCCccCCChHHHH------Hc--
Confidence 369999999999999999996221 10 0000000 0 0223445443221 11
Q ss_pred cCCCCcCcCceEEEEecCCc----ceeEEeecC---------------------CCCCCCchhhHHHHHHHhhhCCCCCe
Q 003841 128 GGNKGVSDKQIRLKIFSPHV----LDITLVDLP---------------------VTPANSDLANSDALQIAGIADPDGYR 182 (792)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~----~~LtlVDLP---------------------V~~a~~Dl~~~~al~la~~vDp~g~R 182 (792)
+=++....+.+...+.+. .-+.|||.| |+.|...+..|. ..+.+.+...|.+
T Consensus 63 --GITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~~~lp 139 (709)
T 4fn5_A 63 --GITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANKYGVP 139 (709)
T ss_dssp -------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHHTCC
T ss_pred --CCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHHcCCC
Confidence 113445666676654421 258899999 566766665443 3444444556889
Q ss_pred EEEEeecCCCCCC
Q 003841 183 TIGIITKLDIMDR 195 (792)
Q Consensus 183 TIGVlTK~D~~~~ 195 (792)
.|.||||+|+...
T Consensus 140 ~i~~iNKiDr~~a 152 (709)
T 4fn5_A 140 RIVYVNKMDRQGA 152 (709)
T ss_dssp EEEEEECSSSTTC
T ss_pred eEEEEccccccCc
Confidence 9999999999643
No 204
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.34 E-value=0.023 Score=62.95 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=23.3
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccE
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPL 85 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~ 85 (792)
-.+|++||.+|+|||||+++|+|..+.......||..|.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~ 60 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN 60 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCce
Confidence 458999999999999999999999752222245676554
No 205
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.33 E-value=0.088 Score=55.90 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|.+++|||+++..|.+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999877
No 206
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.30 E-value=0.033 Score=62.08 Aligned_cols=25 Identities=44% Similarity=0.583 Sum_probs=22.8
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-+.|+|||+.||||||||++|+|..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4489999999999999999999974
No 207
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.17 E-value=0.019 Score=64.33 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+++|.+++||||++..|.+.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999854
No 208
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.08 E-value=0.08 Score=59.33 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.4
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|+|+|.+|+||||++.+|.+.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999874
No 209
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.02 E-value=0.047 Score=58.94 Aligned_cols=38 Identities=24% Similarity=0.107 Sum_probs=27.4
Q ss_pred HHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHh
Q 003841 167 SDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLL 204 (792)
Q Consensus 167 ~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~ 204 (792)
++++..++.+.....-|+.|+||.|-...+..+.+++.
T Consensus 255 ~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~ 292 (328)
T 3e70_C 255 NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISY 292 (328)
T ss_dssp THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHH
Confidence 56777777776555678899999998766666655554
No 210
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.98 E-value=0.039 Score=59.05 Aligned_cols=56 Identities=29% Similarity=0.283 Sum_probs=33.4
Q ss_pred HHHHHHHhhhCCCCCeEEEEeecCCCCCCcchHHHHHhCCCcccccCeeEEecCChhhh
Q 003841 167 SDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 225 (792)
Q Consensus 167 ~~al~la~~vDp~g~RTIGVlTK~D~~~~gt~~~~il~~~~~~L~lGy~~V~nrsq~di 225 (792)
+++++.++.+.....-+-.|+||.|-..+|..+.+++.--..|+ -|+++-.+ .+|+
T Consensus 236 ~~~l~~a~~~~~~~~i~gvVlTk~D~~~~gG~~l~~~~~~~~Pi--~~i~~Ge~-~~dl 291 (306)
T 1vma_A 236 QNGLVQAKIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPI--KFIGVGEK-AEDL 291 (306)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEECGGGCSCTTHHHHHHHHHCCCE--EEEECSSS-GGGE
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCccchHHHHHHHHHHCCCE--EEEeCCCC-hhhc
Confidence 55666666655433445567899998877766666654333343 36665444 3454
No 211
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.51 E-value=0.022 Score=62.54 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=28.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccE
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPL 85 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~ 85 (792)
.+|++||.+|+|||||+++|+|.......-..||..|.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn 39 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKN 39 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccc
Confidence 57999999999999999999987521122234676664
No 212
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.10 E-value=0.034 Score=60.44 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.8
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
-..+.|+++|..|||||||||+|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999985
No 213
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.48 E-value=0.061 Score=55.34 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999984
No 214
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.46 E-value=0.047 Score=54.68 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=22.1
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-.-||++|.++||||||++.|.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4457899999999999999999976
No 215
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.41 E-value=0.058 Score=56.41 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.+++||..+|||||||+.|+|.-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 67899999999999999999984
No 216
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.06 E-value=0.054 Score=54.95 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
--++|+|.++||||||++.|+|..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468899999999999999999983
No 217
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.02 E-value=0.057 Score=53.52 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=25.0
Q ss_pred EEEEccCCCchhHHHHHHhCCC--CccccCCCCCcc
Q 003841 50 VAVVGSQSSGKSSVLEALVGRD--FLPRGNDICTRR 83 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~G~~--~lPr~~~~~TR~ 83 (792)
|||+|.++|||+||++.|.... .+...-..+||-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~ 39 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT 39 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC
Confidence 8999999999999999997541 123344456663
No 218
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.00 E-value=0.18 Score=56.47 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=18.8
Q ss_pred eEEEEccCCCchhHHHHHHh
Q 003841 49 QVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~ 68 (792)
.|+|+|.+++||||+...|.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68889999999999999998
No 219
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.89 E-value=0.063 Score=53.38 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.8
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-++++|.++||||||++.|+|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999998
No 220
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.86 E-value=0.056 Score=56.10 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|..+|||||||+.|+|.-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999984
No 221
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=91.81 E-value=0.091 Score=54.14 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.6
Q ss_pred CCCCeEEEEccC---------CCchhHHHHHHhC
Q 003841 45 IELPQVAVVGSQ---------SSGKSSVLEALVG 69 (792)
Q Consensus 45 i~lPqIvVvG~q---------ssGKSSlLeal~G 69 (792)
-..-+|+|||+. ++|||||+++|++
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 345689999999 9999999999998
No 222
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.75 E-value=0.066 Score=53.04 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|+|||.++||||||++.|+|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999986
No 223
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.73 E-value=0.067 Score=53.29 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.7
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
..+.|+|+|..++|||||++.|++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999998764
No 224
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.70 E-value=0.082 Score=54.15 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-+++||..+|||||||+.|+|.-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58899999999999999999984
No 225
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.69 E-value=0.068 Score=53.05 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=23.1
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
..|.|+|+|..|+|||||+++|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999876
No 226
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.68 E-value=0.061 Score=54.84 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|..+|||||||+.|+|.-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999984
No 227
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.66 E-value=0.061 Score=56.62 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-+++||..+|||||||+.|+|.-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999999984
No 228
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.64 E-value=0.07 Score=51.84 Aligned_cols=23 Identities=13% Similarity=0.484 Sum_probs=21.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
--|+++|.++||||||++.|.|.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999986
No 229
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.63 E-value=0.09 Score=55.77 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=22.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~~ 72 (792)
-.++++|.++|||||||++|.|...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3689999999999999999999853
No 230
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=91.52 E-value=0.14 Score=57.07 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=29.8
Q ss_pred CCeEEEEccCCCchhHHHHHHhCCCCccccCCCCCcccEE
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~~~lPr~~~~~TR~P~~ 86 (792)
.+.|++||..||||||||++|+|......+....|..|..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~ 196 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNL 196 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceeccee
Confidence 4679999999999999999999985322233345666653
No 231
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.47 E-value=0.087 Score=53.49 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=21.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|..+|||||||+.|+|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999984
No 232
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.39 E-value=0.068 Score=54.89 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|..+|||||||+.|+|.-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999984
No 233
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.37 E-value=0.072 Score=55.05 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.9
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-++++|..+|||||||+.|+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999997
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=91.28 E-value=0.12 Score=58.01 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.8
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
..--|+|||.+++|||+|||.|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4456889999999999999999864
No 235
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.18 E-value=0.081 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=20.8
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|+|+|.++||||||++.|.|.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999988
No 236
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.16 E-value=0.074 Score=55.33 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|..+|||||||+.|+|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999984
No 237
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.11 E-value=0.11 Score=56.65 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=21.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|.+|+||||||++|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 69999999999999999999984
No 238
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.05 E-value=0.076 Score=55.05 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=24.2
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~ 80 (792)
.++++|..+|||||||+.|+|.- +-.+|.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I 62 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH--RPIQGKI 62 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS--CCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEE
Confidence 57899999999999999999984 3344444
No 239
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.05 E-value=0.11 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-|+++|..+||||||++.|.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999987
No 240
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.01 E-value=0.096 Score=57.16 Aligned_cols=29 Identities=28% Similarity=0.588 Sum_probs=24.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
-|+|+|..+|||||||++|+|. +|...|.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~--~~~~~g~ 205 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE--IPFDQRL 205 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT--SCTTSCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc--CCCCceE
Confidence 6999999999999999999997 3555554
No 241
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.00 E-value=0.087 Score=50.80 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-.+|+|..+|||||||+||.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 37799999999999999999876
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.99 E-value=0.088 Score=51.56 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.8
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+++|..+||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999997
No 243
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.99 E-value=0.11 Score=52.60 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=21.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999984
No 244
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.98 E-value=0.11 Score=53.28 Aligned_cols=23 Identities=52% Similarity=0.625 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999983
No 245
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.89 E-value=0.08 Score=55.76 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999984
No 246
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.87 E-value=0.089 Score=56.75 Aligned_cols=29 Identities=28% Similarity=0.580 Sum_probs=24.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
-|+|+|..+|||||||++|+|. +|..+|.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~--~~~~~g~ 201 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF--IPKEERI 201 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG--SCTTSCE
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCCcE
Confidence 5899999999999999999998 3445554
No 247
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.85 E-value=0.086 Score=55.08 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|..+|||||||+.|+|..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999983
No 248
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.74 E-value=0.11 Score=53.98 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|..+|||||||..|+|.-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999984
No 249
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.73 E-value=0.12 Score=53.26 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.7
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
=-++++|..+|||||||+.|+|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999994
No 250
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.71 E-value=0.098 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=20.4
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+++|..+||||||++.|+|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999987
No 251
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.71 E-value=0.12 Score=50.05 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+++|..+||||||++.|+|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5889999999999999999997
No 252
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.68 E-value=0.11 Score=50.95 Aligned_cols=22 Identities=23% Similarity=0.610 Sum_probs=20.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.++++|..+|||||||..|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999987
No 253
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.66 E-value=0.12 Score=53.37 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999984
No 254
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.64 E-value=0.098 Score=52.65 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=20.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-++|||.++||||||++.|+|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999996
No 255
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.57 E-value=0.059 Score=57.69 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|.+|+||||||++|+|..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 479999999999999999999984
No 256
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.55 E-value=2.9 Score=44.62 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.2
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|.+++||||++-.|.+.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999887
No 257
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.38 E-value=0.13 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999994
No 258
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.37 E-value=0.13 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=23.0
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
..|.|+|+|.++||||||++.|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3689999999999999999999976
No 259
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.24 E-value=0.13 Score=53.58 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|..+|||||||+.|+|.-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 57899999999999999999984
No 260
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.19 E-value=0.14 Score=53.70 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999984
No 261
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.09 E-value=0.14 Score=53.22 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68899999999999999999984
No 262
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.94 E-value=0.15 Score=53.23 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|..+|||||||+.|+|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999984
No 263
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.61 E-value=0.13 Score=50.76 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.6
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|+++|..+||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999986
No 264
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.45 E-value=0.11 Score=51.39 Aligned_cols=25 Identities=20% Similarity=0.587 Sum_probs=21.8
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-.-|+|+|.++||||||.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4457899999999999999999765
No 265
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.37 E-value=0.093 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=21.7
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
+.|+|||.++||||||++.|+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999987
No 266
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.29 E-value=0.14 Score=58.60 Aligned_cols=30 Identities=30% Similarity=0.539 Sum_probs=25.4
Q ss_pred EEEEccCCCchhHHHHHHhCCCCccccCCCCC
Q 003841 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~G~~~lPr~~~~~T 81 (792)
|+|+|..+|||||+|++|+|. +|.+.+++|
T Consensus 263 i~I~GptGSGKTTlL~aL~~~--i~~~~giit 292 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMMF--IPPDAKVVS 292 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGGG--SCTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHhh--CCCCCCEEE
Confidence 899999999999999999987 466666544
No 267
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.17 E-value=0.16 Score=48.84 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=21.2
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|+.+||||||+.+|+|.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999999983
No 268
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.10 E-value=0.15 Score=51.34 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=24.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~T 81 (792)
.++++|..+|||||||..|+|. . |. +|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl-~-p~-~G~I~ 53 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ-A-LQ-SKQVS 53 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH-H-HH-TTSCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC-C-Cc-CCeee
Confidence 4889999999999999999998 3 54 44443
No 269
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.04 E-value=0.19 Score=52.45 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999994
No 270
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=88.90 E-value=0.43 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=20.1
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|.+++||||++..|.+.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999877
No 271
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=88.73 E-value=0.18 Score=49.29 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=20.9
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+++|..+|||||+++.|.|.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999987
No 272
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.57 E-value=0.2 Score=52.97 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++++|..+|||||||+.|+|.-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58899999999999999999984
No 273
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.55 E-value=0.16 Score=54.28 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.+++||..+|||||||..|+|.-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 68999999999999999999983
No 274
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.27 E-value=0.18 Score=54.44 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.6
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-..|+++|..||||||||++|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999976
No 275
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=88.23 E-value=0.2 Score=47.65 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.6
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|+++|..+||||||+..|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999876
No 276
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.22 E-value=0.19 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.8
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|..+|||||+|.+|+|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999999997
No 277
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.22 E-value=0.29 Score=48.54 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=24.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
-++++|..+||||+|+..|+|.-..|.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g 56 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 56 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 578999999999999999999533455544
No 278
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.22 E-value=0.23 Score=46.96 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.2
Q ss_pred CeEEEEccCCCchhHHHHHHh
Q 003841 48 PQVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~ 68 (792)
+-.+|+|+.+||||++|+||.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999986
No 279
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.21 E-value=0.23 Score=47.79 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=18.3
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
-+++||.++||||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 478999999999999998653
No 280
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.20 E-value=0.19 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
-.++|||..+||||||+..|+|.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 36899999999999999999987
No 281
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=87.89 E-value=0.25 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.8
Q ss_pred CeEEEEccCCCchhHHHHHHh---CCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALV---GRDF 72 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~---G~~~ 72 (792)
..|+|+|..+|||||++..|+ |...
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 579999999999999999999 9854
No 282
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.58 E-value=0.3 Score=51.75 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.3
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
-.++++|.+++||||||++|. .
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-S
T ss_pred cEEEEECCCCCCHHHHHHHHH-H
Confidence 468999999999999999999 5
No 283
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=87.38 E-value=0.27 Score=53.62 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|.++|||||||+.|+|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999994
No 284
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=87.38 E-value=0.23 Score=48.82 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-|+++|..+||||||++.|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999875
No 285
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=87.38 E-value=0.22 Score=53.21 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.2
Q ss_pred CCCC-eEEEEccCCCchhHHHHHHhCC
Q 003841 45 IELP-QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 45 i~lP-qIvVvG~qssGKSSlLeal~G~ 70 (792)
+.-+ -|+|+|.++||||||++.|.|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 4444 4779999999999999999997
No 286
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.30 E-value=0.19 Score=50.65 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=15.2
Q ss_pred eEEEEccCCCchhHHHHHHh-CC
Q 003841 49 QVAVVGSQSSGKSSVLEALV-GR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~-G~ 70 (792)
-|+++|..+||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999 87
No 287
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.17 E-value=0.27 Score=53.64 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|.++|||||||+.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57899999999999999999985
No 288
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.08 E-value=0.29 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|.++|||||||+.|+|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57899999999999999999994
No 289
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=86.99 E-value=0.29 Score=53.42 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|.++|||||||+.|+|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 57899999999999999999984
No 290
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=86.94 E-value=0.29 Score=53.65 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|.++|||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 57899999999999999999994
No 291
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=86.87 E-value=0.26 Score=47.71 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.3
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
-|+++|..+||||||+..|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999999986
No 292
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.82 E-value=0.3 Score=53.44 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-+++||.++|||||||..|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 58899999999999999999984
No 293
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=86.55 E-value=0.32 Score=53.56 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|.++|||||||+.|+|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 57899999999999999999994
No 294
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.53 E-value=0.32 Score=53.38 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|.++|||||||+.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999999984
No 295
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.41 E-value=0.28 Score=48.45 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.1
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~ 78 (792)
.|+++|.+++|||||+..|+|. ++ .+|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~--~~-~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV--LK-SSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH--HH-HTT
T ss_pred EEEEECCCCChHHHHHHHHHhh--cc-cCC
Confidence 4899999999999999999987 35 555
No 296
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=86.24 E-value=0.3 Score=46.60 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-|+++|..+||||||+..|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 36899999999999999999764
No 297
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=86.11 E-value=0.27 Score=53.41 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=22.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++|||..|||||||++.|.|.-
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999983
No 298
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=86.08 E-value=0.26 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|.++|||||||+.|+|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 57899999999999999999994
No 299
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=85.99 E-value=0.45 Score=45.67 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 24 ~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
....+++.++..++.+.+. .-.-++++|..++|||+|+.+|.|.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~---~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 18 SQNRALLTIRVFVHNFNPE---EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHHHHSCCGG---GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccc---CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4556778888777655432 2346899999999999999999987
No 300
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=85.87 E-value=0.51 Score=46.48 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.3
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|.++||||||++.|.+.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999875
No 301
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=85.84 E-value=0.31 Score=49.66 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.2
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+++|..+||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999885
No 302
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=85.81 E-value=0.32 Score=47.82 Aligned_cols=23 Identities=35% Similarity=0.265 Sum_probs=21.0
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-|+++|..+||||||...|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999987
No 303
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.57 E-value=0.4 Score=46.71 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=22.2
Q ss_pred CCeEEEEccCCCchhHHHHHHhCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.|.|+|+|.++||||+|++.|++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 678999999999999999999875
No 304
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.45 E-value=0.32 Score=53.01 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=21.1
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|..+|||||+|.+|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999997
No 305
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=85.32 E-value=0.39 Score=53.00 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
--++++|.++|||||||..|.|..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 368999999999999999999983
No 306
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=85.09 E-value=0.35 Score=48.81 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|..+|||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999987
No 307
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=84.94 E-value=0.37 Score=49.46 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=23.1
Q ss_pred CCeEEEEccCCCchhHHHHHHh---CCCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALV---GRDF 72 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~---G~~~ 72 (792)
-..|+++|..+||||||+..|. |..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 3579999999999999999999 8754
No 308
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=84.94 E-value=0.5 Score=54.30 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=24.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~T 81 (792)
.++++|..+|||||||++|+|.. +-.+|.++
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~i~ 344 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE--EPTEGKIE 344 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCSBCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCeEEE
Confidence 68899999999999999999984 33444443
No 309
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=84.91 E-value=0.44 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-|+|+|..+|||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999744
No 310
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=84.89 E-value=0.36 Score=54.50 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=23.9
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
.-+.++|+|..+||||||+..|+|.-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 55899999999999999999999983
No 311
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=84.67 E-value=0.27 Score=53.51 Aligned_cols=23 Identities=22% Similarity=0.624 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|.++|||||||+.|+|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999984
No 312
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=84.66 E-value=0.36 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.6
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+++|.++||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999986
No 313
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=84.59 E-value=0.43 Score=47.37 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
..|+++|..+||||||.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 314
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=84.57 E-value=0.41 Score=52.20 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.4
Q ss_pred CCCeEEEEccCCCchhHHHHHHh
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~ 68 (792)
+..-.+|+|..+|||||+||||+
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34578899999999999999998
No 315
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=84.37 E-value=0.37 Score=54.69 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
--++++|..+|||||||.+|+|..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 357899999999999999999983
No 316
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=84.36 E-value=0.47 Score=54.55 Aligned_cols=29 Identities=21% Similarity=0.388 Sum_probs=24.0
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~ 79 (792)
.++++|..+|||||||++|+|.. +-.+|.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~ 324 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI--TADEGS 324 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CCSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcE
Confidence 67899999999999999999984 334444
No 317
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=84.01 E-value=0.41 Score=51.62 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.7
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
..+.|+++|..|+||||++++|+|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999865
No 318
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=84.00 E-value=0.5 Score=46.99 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.1
Q ss_pred CeEEEEccCCCchhHHHHHHh
Q 003841 48 PQVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~ 68 (792)
.-.+|+|..++||||+|+||.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 477899999999999999985
No 319
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=83.86 E-value=0.56 Score=53.95 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.+++||..+|||||||..|+|.-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999983
No 320
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=83.62 E-value=0.61 Score=54.46 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=24.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccccCCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr~~~~~ 80 (792)
.++++|..+|||||||..|+|.. +-.+|.+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~I 413 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE--EPTEGKV 413 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCSBSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCceEE
Confidence 68899999999999999999983 3334443
No 321
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=83.59 E-value=0.45 Score=46.58 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=20.0
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
.|+|+|..+||||||.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 322
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=83.58 E-value=0.44 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|++||.++|||||++..|.|.
T Consensus 104 vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6889999999999999999987
No 323
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=83.45 E-value=0.62 Score=43.55 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.7
Q ss_pred CeEEEEccCCCchhHHHHHH
Q 003841 48 PQVAVVGSQSSGKSSVLEAL 67 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal 67 (792)
+-|+|+|..+|||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46999999999999999999
No 324
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=83.40 E-value=0.87 Score=44.68 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=24.0
Q ss_pred CCCCCCCCC-eEEEEccCCCchhHHHHHHhCC
Q 003841 40 GSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 40 G~~~~i~lP-qIvVvG~qssGKSSlLeal~G~ 70 (792)
|+-..+.-+ .|+|+|..+||||||.+.|.+.
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 433445555 5779999999999999999986
No 325
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=83.05 E-value=0.45 Score=44.92 Aligned_cols=25 Identities=32% Similarity=0.419 Sum_probs=22.8
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-.-++++|..++|||+|+.+|.|.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5567999999999999999999987
No 326
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=83.05 E-value=0.53 Score=54.55 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.+++||..+||||||++.|.|.-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999983
No 327
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=83.05 E-value=0.6 Score=45.80 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.2
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+++|..+|||||+.+.|.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999999873
No 328
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=83.05 E-value=1 Score=47.50 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.2
Q ss_pred CCeEEEEccCCCchhHHHHHHhCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
-.-|+|+|.++||||||.+.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999876
No 329
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.02 E-value=0.47 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|..+|||||+|.+|+|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999987
No 330
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=82.59 E-value=0.52 Score=47.26 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=19.8
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-++++|..+||||+|+..|++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999999943
No 331
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=82.57 E-value=0.77 Score=47.84 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=25.8
Q ss_pred HHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 34 DIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 34 d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
++|+.+|+... .-|.++|.+++|||+|+++|.|.
T Consensus 34 ~~l~~~~l~~~---~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 34 DQFKALGLVTP---AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHHTTCCCC---SEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCC---CeEEEECCCCCcHHHHHHHHHHH
Confidence 34555664311 23999999999999999999986
No 332
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=82.41 E-value=0.8 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.3
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-+++||..+|||||||..|+|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999999983
No 333
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.39 E-value=0.44 Score=50.78 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~~ 71 (792)
.+|-++|+|..+|||||||+.|.|..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 36889999999999999999999873
No 334
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=82.38 E-value=0.51 Score=52.56 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.8
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|..+|||||+|.+|+|.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999997
No 335
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=82.38 E-value=0.55 Score=45.99 Aligned_cols=23 Identities=43% Similarity=0.521 Sum_probs=20.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
..|+++|..+||||||.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998754
No 336
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=82.05 E-value=0.84 Score=53.30 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-+++||..+|||||||+.|+|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999999984
No 337
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=81.95 E-value=0.72 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.4
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.+++||..+|||||||..|+|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68899999999999999999983
No 338
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=81.92 E-value=0.55 Score=50.41 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.5
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|.++||||||++.|.|.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 339
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=81.45 E-value=0.74 Score=49.65 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.1
Q ss_pred eEEEEccCCCchhHHHHHHhCCCCccc
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~~lPr 75 (792)
+|+++|+.++||||+|..+.+. +.|.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~-~~~~ 26 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN-MQPL 26 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC-CCSG
T ss_pred CEEEECCCCCCHHHHHHHHHcC-CCCC
Confidence 5899999999999999988876 4454
No 340
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=81.15 E-value=0.65 Score=49.88 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=18.7
Q ss_pred CeEEEEccCCCchhHHHHHHh
Q 003841 48 PQVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~ 68 (792)
.-.+|+|+.++|||++|+||.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999985
No 341
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=81.09 E-value=0.84 Score=44.15 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=20.0
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|+++|..+|||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999764
No 342
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=80.88 E-value=0.63 Score=49.40 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.6
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|++||.++|||||++..|+|.
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5779999999999999999998
No 343
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=80.76 E-value=0.68 Score=53.76 Aligned_cols=23 Identities=43% Similarity=0.517 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.+++||+.+||||||++.|.|.-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999983
No 344
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=80.73 E-value=0.73 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.+++||+.+||||||++.|.|.-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999999983
No 345
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.48 E-value=0.69 Score=49.23 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-.+++|..+||||+||+||...
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHHT
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999999999854
No 346
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=80.43 E-value=0.7 Score=45.26 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.6
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
..|+++|..+||||||...|.+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999744
No 347
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=80.31 E-value=0.74 Score=53.54 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.+++||+.+||||||++.|.|.-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 79999999999999999999983
No 348
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=80.30 E-value=0.67 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-.+++|+.++|||++||+|.+.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHh
Confidence 36789999999999999999865
No 349
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=80.24 E-value=0.85 Score=43.15 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.3
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
-|+|+|..+|||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 489999999999999999975
No 350
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=80.18 E-value=1.1 Score=45.55 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.6
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+++|..++|||+|+.+|.|.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999986
No 351
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=80.10 E-value=0.86 Score=43.58 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=19.3
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
-|+|+|..+|||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 352
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=79.82 E-value=0.86 Score=43.58 Aligned_cols=22 Identities=32% Similarity=0.287 Sum_probs=19.8
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|..+|||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 353
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=79.73 E-value=0.71 Score=51.20 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
.-++|+|..++|||+||+||.+.-
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 357999999999999999999874
No 354
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=79.65 E-value=0.32 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.305 Sum_probs=21.3
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
-.+++||..+||||+||++|.+.
T Consensus 61 G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 61 GFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999877
No 355
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=79.65 E-value=0.91 Score=43.11 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.8
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+++|-.+|||||+...|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999754
No 356
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=79.47 E-value=0.52 Score=46.23 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.9
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|..+|||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999765
No 357
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=79.09 E-value=0.78 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.+++||+.+||||||++.|.|.-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999983
No 358
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=79.06 E-value=0.86 Score=49.54 Aligned_cols=21 Identities=48% Similarity=0.727 Sum_probs=19.1
Q ss_pred CeEEEEccCCCchhHHHHHHh
Q 003841 48 PQVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~ 68 (792)
.-.|++|+.++|||++||||.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 567899999999999999985
No 359
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=78.93 E-value=0.69 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.5
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.+++||+.+||||||++.|.|.-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 78999999999999999999983
No 360
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=78.81 E-value=1 Score=52.47 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=20.9
Q ss_pred EEEEccCCCchhHHHHHHhCCC
Q 003841 50 VAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~G~~ 71 (792)
++++|..+|||||||+.|+|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6999999999999999999984
No 361
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=78.78 E-value=0.87 Score=43.59 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=20.1
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+++|..+|||||+...|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 362
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=78.30 E-value=1 Score=43.65 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-|+++|..+|||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999755
No 363
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=77.84 E-value=1.1 Score=43.06 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.9
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
-|+|+|..+|||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 364
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=77.67 E-value=0.96 Score=44.54 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=20.1
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-++++|..++|||+|+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5788999999999999999976
No 365
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=77.63 E-value=0.91 Score=49.49 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.6
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|++||.++|||||++..|+|.
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhh
Confidence 5779999999999999999998
No 366
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=77.56 E-value=1.1 Score=43.04 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.5
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|.|..+|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999743
No 367
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=77.51 E-value=1.4 Score=45.38 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.6
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+++|..++|||+|+.+|.|.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999986
No 368
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=77.48 E-value=0.23 Score=50.76 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=19.7
Q ss_pred EEEEccCCCchhHHHHHHhCCC
Q 003841 50 VAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~G~~ 71 (792)
++|+|..+|||||||.+|.|..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 3678999999999999999984
No 369
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=77.43 E-value=1.1 Score=43.47 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=20.3
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-|+|+|..+|||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999754
No 370
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=77.38 E-value=1.3 Score=42.35 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.0
Q ss_pred CCeEEEEccCCCchhHHHHHHh
Q 003841 47 LPQVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~ 68 (792)
.+.|+++|..+||||++...|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999985
No 371
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=77.08 E-value=1.2 Score=42.59 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.1
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
.|+++|..+|||||+.+.|..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999973
No 372
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=76.77 E-value=1.3 Score=42.22 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.2
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
+.|+++|..+|||||+...|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999998643
No 373
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=76.54 E-value=1.4 Score=42.49 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=20.8
Q ss_pred CCeEEEEccCCCchhHHHHHHhCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
-+.|+++|..+|||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998654
No 374
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=76.34 E-value=1 Score=46.92 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-++|+|..++|||+|+..|+|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6889999999999999999987
No 375
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=76.33 E-value=1.3 Score=42.22 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.7
Q ss_pred CCCeEEEEccCCCchhHHHHHHh
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~ 68 (792)
..+-|+++|..+||||++...|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34679999999999999999997
No 376
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=76.27 E-value=1.1 Score=43.07 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.8
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-|+++|..+|||||+...|.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999866
No 377
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=75.68 E-value=1.3 Score=43.22 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.4
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
-|+|+|..+|||||+.+.|..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999974
No 378
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=75.58 E-value=1.5 Score=43.22 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=18.8
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
.|+|+|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 379
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=75.27 E-value=1.4 Score=43.06 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.8
Q ss_pred CeEEEEccCCCchhHHHHHHhC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G 69 (792)
.-|+|+|..+|||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=75.16 E-value=1.4 Score=42.09 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.1
Q ss_pred CeEEEEccCCCchhHHHHHHh
Q 003841 48 PQVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~ 68 (792)
|.|+++|..+||||++-..|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 569999999999999998885
No 381
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=74.95 E-value=1.6 Score=41.92 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCchhHHHHHHhC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G 69 (792)
.+-|+++|..+|||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 382
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=74.89 E-value=1.5 Score=41.97 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.0
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
-|+++|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 383
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=74.46 E-value=1.6 Score=42.95 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.9
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
.|+++|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999853
No 384
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=74.42 E-value=1.5 Score=43.34 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=19.5
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
-|+|+|..+|||||+.+.|.+
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 385
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=73.87 E-value=1.7 Score=40.90 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.5
Q ss_pred CeEEEEccCCCchhHHHHHHhC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G 69 (792)
+.|+++|..+||||++...|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 386
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=73.79 E-value=2.1 Score=48.01 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=19.1
Q ss_pred CCCeEEEEccCCCchhHHHHHHh
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~ 68 (792)
++--|+|+|.+++|||.|||.|.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 34467789999999999999765
No 387
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=73.39 E-value=1.7 Score=41.50 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.7
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
-|+++|..+|||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 388
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=73.22 E-value=1.6 Score=42.31 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.7
Q ss_pred CeEEEEccCCCchhHHHHHHhC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G 69 (792)
|.|++.|..+||||||.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 389
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=73.20 E-value=1.8 Score=40.64 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=18.9
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
.|+++|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 390
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=73.17 E-value=2.5 Score=45.17 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 28 ~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.+++|.+.+...-.+..-..|-++|+|..++|||+++.++.+.
T Consensus 25 ~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 25 QLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp HHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4455555444330011223468999999999999999999876
No 391
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=73.05 E-value=1.5 Score=45.23 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.3
Q ss_pred CCeEEEEccCCCchhHHHHHHhCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
-..|+++|..+||||||.+.|.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999763
No 392
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=72.96 E-value=1.7 Score=41.99 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
..|+++|..+|||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 46899999999999999999754
No 393
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=72.64 E-value=3.6 Score=39.52 Aligned_cols=38 Identities=18% Similarity=0.412 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 27 PLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 27 ~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
..++.|.+.+..- ..|.+++.|..++|||++++++...
T Consensus 24 ~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 24 EVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp HHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3566666655421 3445999999999999999999754
No 394
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=72.52 E-value=2 Score=41.35 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-|+++|..+|||||+...|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998643
No 395
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=72.52 E-value=2.4 Score=42.86 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=25.3
Q ss_pred CCCCeEEEEccCCCchhHHHHHHh-----CCCCcccc
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALV-----GRDFLPRG 76 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~-----G~~~lPr~ 76 (792)
-..+-++++|..|+||||++++|+ |.+.+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 356788999999999999999998 65544333
No 396
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=72.40 E-value=1.8 Score=41.24 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.3
Q ss_pred CeEEEEccCCCchhHHHHHHhC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G 69 (792)
.-|+++|..+|||||+...|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
No 397
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=71.79 E-value=1.4 Score=55.94 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=21.0
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|++||+.+||||||+..|.|.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7899999999999999999887
No 398
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=71.72 E-value=1.7 Score=42.92 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.6
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-|+++|..+|||||+...|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999875
No 399
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=71.44 E-value=1.3 Score=54.28 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=21.7
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.++|+|..+|||||||+.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999984
No 400
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=71.43 E-value=1.6 Score=48.70 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
=.++++|..++|||+||..|+|..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 378899999999999999999984
No 401
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=71.33 E-value=1.7 Score=43.22 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=20.3
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-++++|+.++|||+|+..|++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999984
No 402
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=71.26 E-value=2 Score=41.72 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.5
Q ss_pred CeEEEEccCCCchhHHHHHHhC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G 69 (792)
.-|+|+|..+|||||+.+.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998863
No 403
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=71.25 E-value=1.6 Score=47.76 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.5
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+++|..++|||||+.+|.|.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999974
No 404
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=71.22 E-value=1.7 Score=47.01 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=22.1
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
-.++++|..++|||+||..|+|..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999984
No 405
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=71.06 E-value=1.8 Score=42.38 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=19.8
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
-++++|..++|||+++..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999998
No 406
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=71.04 E-value=1.6 Score=41.44 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=15.1
Q ss_pred CeEEEEccCCCchhHHHHHHh
Q 003841 48 PQVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~ 68 (792)
.-|+++|..+|||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999986
No 407
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=70.85 E-value=2 Score=42.58 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.6
Q ss_pred CeEEEEccCCCchhHHHHHHhC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G 69 (792)
..|+|+|..+|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 408
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=70.76 E-value=2.2 Score=42.43 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.0
Q ss_pred CeEEEEccCCCchhHHHHHHhC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G 69 (792)
..|+|+|..+|||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999873
No 409
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=70.65 E-value=2 Score=45.00 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCC-eEEEEccCCCchhHHHHHHhCC
Q 003841 24 SVIPLVNKLQDIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 24 ~l~~~~nkL~d~~~~~G~~~~i~lP-qIvVvG~qssGKSSlLeal~G~ 70 (792)
++..+++++... .++......-| -|+++|.++|||||+...|...
T Consensus 11 ~~~~~~~~~~~~--~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 11 QFENRLNDNLEE--LIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHHH--HHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhccccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455666665442 24432223334 4788999999999999999753
No 410
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=70.46 E-value=2.2 Score=41.57 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.2
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
.|+|+|..+|||||+.+.|..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 411
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=70.27 E-value=2.3 Score=42.00 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=19.0
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
.|+|+|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 412
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=69.96 E-value=2.3 Score=39.87 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=20.9
Q ss_pred CCeEEEEccCCCchhHHHHHHhCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
-.-|+++|..++|||+++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998755
No 413
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=69.80 E-value=2.1 Score=54.52 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=21.1
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.++|||..+||||||+..|.|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 7999999999999999999987
No 414
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=69.56 E-value=2.1 Score=45.62 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.2
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
...-++++|..++|||+|+.+|.|.
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3466999999999999999999886
No 415
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=68.55 E-value=6.6 Score=40.93 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=29.4
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 20 PLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 20 ~~~~~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.++.+- .+++|.+.+.. | +-++|.|..++|||||+..+...
T Consensus 14 ~~gR~~--el~~L~~~l~~-~-------~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 14 IFDREE--ESRKLEESLEN-Y-------PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SCSCHH--HHHHHHHHHHH-C-------SEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCChHH--HHHHHHHHHhc-C-------CeEEEECCCcCCHHHHHHHHHHH
Confidence 455432 45556555443 2 68999999999999999998754
No 416
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.36 E-value=2.1 Score=45.39 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.9
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
-..|.+.++|..++|||+++.+|.|.
T Consensus 34 ~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 34 RDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp TCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35667999999999999999999983
No 417
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=68.20 E-value=2.5 Score=43.37 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.8
Q ss_pred CeEEEEccCCCchhHHHHHHhC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G 69 (792)
+-|+++|-.+|||||+...|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5699999999999999999864
No 418
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=68.13 E-value=2.2 Score=43.75 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.6
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|..+||||+|-..|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5899999999999999999754
No 419
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=67.75 E-value=2.1 Score=43.72 Aligned_cols=22 Identities=45% Similarity=0.466 Sum_probs=19.8
Q ss_pred CeEEEEccCCCchhHHHHHHhC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G 69 (792)
..|+++|..+||||||.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999973
No 420
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=67.49 E-value=2.7 Score=41.97 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.9
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
.|+|+|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 421
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=67.39 E-value=2.4 Score=53.75 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=21.2
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.+++||..+||||||+..|.|.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999998
No 422
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=67.35 E-value=2.7 Score=42.45 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=20.4
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|.|..+|||||+++.|...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999876
No 423
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=66.91 E-value=2.4 Score=42.55 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=20.9
Q ss_pred CCCeEEEEccCCCchhHHHHHHhC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G 69 (792)
....|+++|..+|||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 424
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=66.70 E-value=3.2 Score=41.03 Aligned_cols=22 Identities=18% Similarity=0.361 Sum_probs=19.7
Q ss_pred CeEEEEccCCCchhHHHHHHhC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G 69 (792)
..|+|+|..+|||||+...|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 425
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=66.63 E-value=1.7 Score=50.06 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.6
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|+++|..+||||||+.+|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 5789999999999999999988
No 426
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=66.62 E-value=2.3 Score=43.84 Aligned_cols=22 Identities=27% Similarity=0.281 Sum_probs=20.0
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-++|+|..++|||+|+..|++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6889999999999999999873
No 427
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=66.50 E-value=2.3 Score=43.45 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=21.9
Q ss_pred CCCCC-eEEEEccCCCchhHHHHHHhCC
Q 003841 44 TIELP-QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 44 ~i~lP-qIvVvG~qssGKSSlLeal~G~ 70 (792)
...-| .|+++|.++|||||+...|.+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34444 5789999999999999999765
No 428
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.46 E-value=5 Score=42.57 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 28 ~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
+++.|...+. .-.+|.+.++|+.|+|||+++.+|.+.
T Consensus 33 ~~~~L~~~i~------~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 33 VITTVRKFVD------EGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHHHH------TTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHh------cCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5555554433 125677999999999999999999876
No 429
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=66.43 E-value=5.9 Score=40.96 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=25.6
Q ss_pred HhCCCCCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 38 QLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 38 ~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.+|+...-...-|.+.|..++|||++..+|...
T Consensus 58 ~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 58 KLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 456554444557999999999999999988654
No 430
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=65.56 E-value=3.2 Score=38.99 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=19.3
Q ss_pred CCCeEEEEccCCCchhHHHHHHh
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~ 68 (792)
..--|+++|..+|||||+-..|.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999885
No 431
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=65.07 E-value=6.2 Score=39.71 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCCCC---eEEEEccCCCchhHHHHHHhCC
Q 003841 23 GSVIPLVNKLQDIFAQLGSQSTIELP---QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 23 ~~l~~~~nkL~d~~~~~G~~~~i~lP---qIvVvG~qssGKSSlLeal~G~ 70 (792)
-+.+..+..|...+. | +| -|++.|..|+|||++..+|+..
T Consensus 39 ~~~~~f~~~l~~~~~--~------iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 39 IEFITFLGALKSFLK--G------TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CCHHHHHHHHHHHHH--T------CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh--c------CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 345677777777654 2 66 7999999999999887777643
No 432
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=65.06 E-value=3.9 Score=43.77 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
|-|+|+|..+||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 56899999999999999999754
No 433
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=64.90 E-value=8.7 Score=35.34 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 28 ~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.+.++.+.+..+.. .+.| |.+.|..++|||++..+|...
T Consensus 9 ~~~~~~~~~~~~a~---~~~~-vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 9 WINQYRRRLQQLSE---TDIA-VWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHHHHTT---CCSC-EEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC---CCCC-EEEECCCCCCHHHHHHHHHHh
Confidence 44555555444432 2233 789999999999999999754
No 434
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=64.80 E-value=2.5 Score=51.85 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.0
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.++++|..+|||||||..|+|-
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999953
No 435
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=64.80 E-value=3.2 Score=42.17 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=19.5
Q ss_pred CeEEEEccCCCchhHHHHHHhC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G 69 (792)
..|+|.|.++||||||-+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998865
No 436
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=64.24 E-value=1.5 Score=44.15 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.8
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|.|..+|||||+++.|...
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 437
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=64.02 E-value=3.6 Score=41.72 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.7
Q ss_pred CeEEEEccCCCchhHHHHHHhC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G 69 (792)
..|+++|..+|||||+...|..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999863
No 438
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=63.84 E-value=2.3 Score=49.95 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=18.0
Q ss_pred eEEEEccCCCchhHHHHHHh
Q 003841 49 QVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~ 68 (792)
.++|||..+|||||||+.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 58899999999999998765
No 439
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=63.76 E-value=3.3 Score=43.13 Aligned_cols=20 Identities=40% Similarity=0.501 Sum_probs=18.8
Q ss_pred eEEEEccCCCchhHHHHHHh
Q 003841 49 QVAVVGSQSSGKSSVLEALV 68 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~ 68 (792)
.|+|+|..+|||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999987
No 440
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=63.65 E-value=3.4 Score=40.87 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.6
Q ss_pred CeEEEEccCCCchhHHHHHHhC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G 69 (792)
..|+|+|..+|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999853
No 441
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=63.64 E-value=3.5 Score=40.54 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.2
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhC
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G 69 (792)
..-.-|+++|..+||||++-+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 442
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=63.59 E-value=1.9 Score=43.53 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
--|+|-|..+|||||+++.|...
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999765
No 443
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=63.53 E-value=9.8 Score=36.67 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 24 ~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
....+++.+...+...+.. ..-.-|++.|..++|||+|+.+|...
T Consensus 33 ~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 33 GRIKAIRFAERFVAEYEPG--KKMKGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp HHHHHHHHHHHHHHHCCSS--CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhc--cCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3445667777766544311 12257999999999999999999865
No 444
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=63.25 E-value=3.6 Score=41.20 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.3
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
..|+|+|..+|||||+.+.|...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998643
No 445
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=63.14 E-value=9 Score=37.01 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCC-eEEEEccCCCchhHHHHHHhCC
Q 003841 28 LVNKLQDIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 28 ~~nkL~d~~~~~G~~~~i~lP-qIvVvG~qssGKSSlLeal~G~ 70 (792)
.++.|...+.. | ..| -++|.|..++|||+++.++...
T Consensus 31 ~~~~l~~~l~~-~-----~~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 31 VLTALANGLSL-G-----RIHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp HHHHHHHHHHH-T-----CCCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-C-----CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 55566655543 2 223 5899999999999999999754
No 446
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=63.08 E-value=3.4 Score=52.37 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
.+++||..+||||||++.|.|.-
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 78999999999999999999983
No 447
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=62.92 E-value=3.1 Score=42.08 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.3
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+++|..++|||+++.+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999999875
No 448
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=62.68 E-value=7.6 Score=42.19 Aligned_cols=25 Identities=40% Similarity=0.395 Sum_probs=22.6
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
..|.|+++|..++|||++..+|.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 5678999999999999999998875
No 449
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=62.38 E-value=3.7 Score=42.56 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.2
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
-|+++|.++|||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999975
No 450
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=61.78 E-value=3.7 Score=38.43 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.8
Q ss_pred CCeEEEEccCCCchhHHHHHHhCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
-+-|+++|..++|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998754
No 451
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=61.14 E-value=4.6 Score=39.62 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 26 IPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 26 ~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
-.+++.|...... + .-+-|+++|..++|||+++.+|...
T Consensus 37 ~~~~~~l~~~~~~-~-----~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 37 DELIGALKSAASG-D-----GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp HHHHHHHHHHHHT-C-----SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-C-----CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456666654331 1 4578999999999999999999765
No 452
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=60.97 E-value=5.9 Score=41.37 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
+-++|.|..++|||+|+..+...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 78999999999999999998754
No 453
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=60.78 E-value=9.7 Score=38.13 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.3
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
+-|.+.|..++|||++..+|...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999754
No 454
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=60.18 E-value=6.4 Score=40.21 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=24.5
Q ss_pred HHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 36 FAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 36 ~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
+..+|+. .-.-|.+.|..++|||+|+.+|...
T Consensus 43 ~~~~~~~---~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 43 FEKVGIE---PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp HHHHCCC---CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhcCCC---CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3445543 2345999999999999999999765
No 455
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=59.48 E-value=4.6 Score=43.12 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=19.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
+-|+|+|..+||||+|...|...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 45788999999999999999754
No 456
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=59.41 E-value=6.4 Score=45.09 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=24.6
Q ss_pred CCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 43 STIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 43 ~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
..+..+-+.++|..++|||+|+.+|.+.
T Consensus 104 ~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 104 KSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp SSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457778999999999999999999876
No 457
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=59.24 E-value=4.2 Score=46.32 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.6
Q ss_pred CCeEEEEccCCCchhHHHHHHhC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G 69 (792)
.|.+.|+|..+||||++|++|+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 59999999999999999999875
No 458
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=59.13 E-value=1.9 Score=49.02 Aligned_cols=23 Identities=30% Similarity=0.305 Sum_probs=20.4
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-.|++|..++|||+||+||.+.
T Consensus 61 g~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 61 GFCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999999654
No 459
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=59.10 E-value=3.4 Score=43.39 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=16.8
Q ss_pred CeEEEEccCCCchhHHHHHHhC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G 69 (792)
+-|+|.|.++||||||.+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999865
No 460
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=58.30 E-value=4.8 Score=40.43 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|.|..+|||||+.+.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 461
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=58.13 E-value=7.6 Score=41.88 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
+-|||+|..+||||+|-..|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 462
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=58.06 E-value=3.7 Score=41.92 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.0
Q ss_pred CCeEEEEccCCCchhHHHHHHhCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
..-|+|.|..+|||||+.+.|...
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998754
No 463
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=57.45 E-value=8.1 Score=35.52 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=19.1
Q ss_pred EEEEccCCCchhHHHHHHhCC
Q 003841 50 VAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~G~ 70 (792)
|.+.|..++|||++..+|...
T Consensus 30 vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCT
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 889999999999999999654
No 464
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=56.61 E-value=6 Score=39.61 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=21.7
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-.-|+++|..++|||+|.-.|..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999999866
No 465
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=55.40 E-value=4.8 Score=42.44 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.0
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+++|.+++||||++..|.+.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999865
No 466
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=55.03 E-value=5.1 Score=43.51 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=23.6
Q ss_pred CCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 45 i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
..-+-++|+|..+||||+++..|++.
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHH
Confidence 35688999999999999999999977
No 467
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=54.77 E-value=11 Score=42.85 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.6
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|.++|.+++|||+|+.+|.|.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999986
No 468
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=54.57 E-value=5.8 Score=43.75 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=19.7
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
.-|+++|-++|||||+...|...
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 35788999999999999998643
No 469
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=54.54 E-value=11 Score=39.39 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=21.5
Q ss_pred CCCCCeEEE-EccCCCchhHHHHHHhCC
Q 003841 44 TIELPQVAV-VGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 44 ~i~lPqIvV-vG~qssGKSSlLeal~G~ 70 (792)
....|..++ .|.+++|||+|.++|...
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456676655 499999999999999754
No 470
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=54.35 E-value=5.2 Score=42.00 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=20.5
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|+|+|.+++||||++..|.|.
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999987
No 471
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=53.95 E-value=6.2 Score=42.57 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.0
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|+|..+||||+|-..|...
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 6899999999999999998764
No 472
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=53.69 E-value=6.6 Score=38.45 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.0
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
.|+++|..+||||++...|..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 473
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=53.60 E-value=5.3 Score=42.24 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=21.5
Q ss_pred CCeEEEEccCCCchhHHHHHHhCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
-.-|+|+|..++|||+|+.++.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999875
No 474
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=53.55 E-value=6.7 Score=39.18 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.5
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|.|..+|||||+++.|...
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999998644
No 475
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=53.52 E-value=6.4 Score=38.95 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.8
Q ss_pred eEEEEccCCCchhHHHHHHhC
Q 003841 49 QVAVVGSQSSGKSSVLEALVG 69 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G 69 (792)
-++|+|+.++|||+++..|+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999776654
No 476
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=53.37 E-value=12 Score=42.23 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.3
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|.++|.+++|||+|+.+|.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999875
No 477
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=52.93 E-value=5.4 Score=47.75 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.7
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
--++++|..++|||++|..|.|.-
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhhh
Confidence 468899999999999999999874
No 478
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=52.75 E-value=5.6 Score=42.83 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.9
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-+.|+|..+||||+|+..|+|.-
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999999874
No 479
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=52.52 E-value=10 Score=38.31 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.3
Q ss_pred EEEEccCCCchhHHHHHHhCC
Q 003841 50 VAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~G~ 70 (792)
|.+.|..++|||++..+|.+.
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999999864
No 480
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=51.83 E-value=6.7 Score=43.85 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.0
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|++||-++|||||+...|...
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 481
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=51.75 E-value=5.8 Score=47.75 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=21.2
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-++++|..++|||++|..|.|..
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 68999999999999999999874
No 482
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=51.66 E-value=7.1 Score=39.75 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
--|+|.|..+|||||+++.|...
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 483
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=51.28 E-value=6.4 Score=39.86 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=17.7
Q ss_pred CCeEEEEccCCCchhHHHHHHhCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
---|+|.|..+|||||+++.|...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999998754
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=51.27 E-value=5.9 Score=45.01 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.8
Q ss_pred eEEEEccCCCchhHHHHH--HhCC
Q 003841 49 QVAVVGSQSSGKSSVLEA--LVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLea--l~G~ 70 (792)
-++|+|..+||||+|+.. +.|.
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl 64 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGI 64 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999 5676
No 485
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=51.13 E-value=14 Score=36.28 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.8
Q ss_pred eEEEEccCCCchhHHHHHHhCCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~~ 71 (792)
-|++.|.+++|||++.-+|..+-
T Consensus 18 gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHcC
Confidence 58999999999999988887653
No 486
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=50.80 E-value=6.6 Score=41.88 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.5
Q ss_pred CeEEEEccCCCchhHHHHHHhCCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~~ 71 (792)
--|+++|.+++|||++..+|+++.
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcC
Confidence 469999999999999999998764
No 487
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=50.73 E-value=7.8 Score=37.90 Aligned_cols=21 Identities=48% Similarity=0.669 Sum_probs=18.8
Q ss_pred EEEEccCCCchhHHHHHHhCC
Q 003841 50 VAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 50 IvVvG~qssGKSSlLeal~G~ 70 (792)
|.|+|...||||++-+.|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999743
No 488
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=50.66 E-value=15 Score=38.46 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=31.2
Q ss_pred CcchHHHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 22 ~~~l~~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
++.-...+..+..+...-| -..+-+++.|..++|||+|+.+|.+.
T Consensus 16 g~~~~~a~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 16 GEGNRLAYEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CTTTHHHHHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4444445666666544222 13456999999999999999999865
No 489
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=50.61 E-value=7.9 Score=39.11 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.7
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|+|.|-.+|||||+.+.|...
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999754
No 490
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=49.81 E-value=6.9 Score=40.28 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.5
Q ss_pred CCeEEEEccCCCchhHHHHHHhCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
-.-|.+.|..++|||+++.+|.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999875
No 491
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=49.60 E-value=6.5 Score=46.13 Aligned_cols=16 Identities=44% Similarity=0.538 Sum_probs=15.1
Q ss_pred eEEEEccCCCchhHHH
Q 003841 49 QVAVVGSQSSGKSSVL 64 (792)
Q Consensus 49 qIvVvG~qssGKSSlL 64 (792)
.+++||..+|||||||
T Consensus 46 ~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHh
Confidence 6899999999999997
No 492
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=49.55 E-value=1.4e+02 Score=34.26 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=3.9
Q ss_pred hHHHHHHHHH
Q 003841 258 PQLAKKLNQI 267 (792)
Q Consensus 258 ~~L~~~L~~~ 267 (792)
+.|+..++..
T Consensus 315 P~l~~~i~~~ 324 (608)
T 3szr_A 315 PLLENQIKET 324 (608)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 493
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=49.45 E-value=6.6 Score=44.63 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.9
Q ss_pred CeEEEEccCCCchhHHHHHHhCC
Q 003841 48 PQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 48 PqIvVvG~qssGKSSlLeal~G~ 70 (792)
--++|+|..++|||+|+..|+|.
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 35789999999999999999997
No 494
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=48.65 E-value=13 Score=38.70 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.2
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
-|.+.|..++|||+|..+|.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5889999999999999999875
No 495
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=48.45 E-value=20 Score=36.90 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 28 ~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.++.|...+.. | ..|.+.+.|..++|||+++.+|...
T Consensus 33 ~~~~l~~~l~~-~-----~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 33 IVKRLKHYVKT-G-----SMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp HHHHHHHHHHH-T-----CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-C-----CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 55666665442 2 4567999999999999999999754
No 496
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=48.38 E-value=8.4 Score=44.46 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.7
Q ss_pred CCeEEEEccCCCchhHHHHHHhCC
Q 003841 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 47 lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.|.+.|+|..+||||.+|++|+-.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHH
Confidence 599999999999999999998753
No 497
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=48.08 E-value=9.8 Score=37.76 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.2
Q ss_pred eEEEEccCCCchhHHHHHHhCC
Q 003841 49 QVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 49 qIvVvG~qssGKSSlLeal~G~ 70 (792)
.|+++|.++|||+|+-+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999888744
No 498
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=47.35 E-value=22 Score=37.35 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 27 PLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 27 ~~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.++..+.+.+...+- ..-.-|++.|..|+|||.|+.+|...
T Consensus 135 ~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 135 EAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 455566666555432 12467999999999999999999754
No 499
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=47.31 E-value=16 Score=40.85 Aligned_cols=37 Identities=14% Similarity=0.374 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEccCCCchhHHHHHHhCC
Q 003841 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 28 ~~nkL~d~~~~~G~~~~i~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
.+.+|.+++.. -..+-++++|..|+|||++.++|...
T Consensus 188 ~i~~l~~~l~r------~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 188 EIQRVIEVLSR------RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHHHHC------SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhc------cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 45555555432 23467899999999999999999765
No 500
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=47.05 E-value=8.9 Score=40.23 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.0
Q ss_pred CCCeEEEEccCCCchhHHHHHHhCC
Q 003841 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (792)
Q Consensus 46 ~lPqIvVvG~qssGKSSlLeal~G~ 70 (792)
..|.+.+.|..++|||+++.+|.+.
T Consensus 57 ~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 57 NLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999876
Done!