Citrus Sinensis ID: 003842

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790--
Protein Sequence
MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQLLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcHHHHHHHHcccccccccccccccccHHHcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccHHHHccccccccEEEccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEcccEEEccccEEEEEEcccccEEEEEcccccccEEEccccccEEEEEccccccccccccccccccccEEccccccccccccEEEEEEEccccEEEEEcccccEEcccccEEccccccEEcccccccEEEEEcccccccccccEEEEEcccccccEEccEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccccEEEcccccccEEEEEEcccccEEEEEcccccEEEcccccccccccccccccccEEEEEEcccccEEEEEccccccEEEEEccccEEEEEEEccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccEEEEEccccEEEEEccccccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEccccEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccccccHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccHccccccHHHHHHHHccccccccEEEcccccccccHEcccccccccccccccccccccccccccccccEEEccccccccccccccccccccHHHHHHcHHcccccccccccHHHHHHHccHHHHHHHHHHHHccccccccccHHHHHHEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEcccccEEEEcccccEEEEEcccccEEEEEcccccEEEEEccccccEEEEEEEEcccccEEEEcccccEEEEEEccccccccccEEEEEEcccccEEEEcccccccccEEEEEEcccccccEEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEccccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEccccEEEEEEccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEcccccEEEEEc
Coil and Loop (DISEMBL)
MQQILLQRHAQQQQQHQQQHQQQQqqqqqppqqpqqqqpqqQQQRRDgahllngntngllgndslmrqnpgtANAMATRMYEEKLKLPVLRDSLDDAAMKQRFgenmgqlldpnhasyiksaaatgqpsgqvlhgtaggmspqvqarsqqlpgstpdikseinpvlnpraagpegslmgipgsnqggnnltlkgwpltgleplrsgllqqqkpfiqapqpfhqiqmlTPQHQQLLLAqqnltspsasdeSRRFRMLLNNrsmslgkdglsnsvgdvvsnvgsplpagghllprgdtDMLIKLKMAQMHQQQQQQQQQQqqnsnpqqhtlsnqqsqssnhnlhqqdkmgpagsvtldgsmsnsfrgndqvsknqtgrkrkqpvsssgpanssgtantagpspssapstpsthtpgdvismpalphsgttskplmmfgtdgagtltspsnqlwddkdLELRADMDRlvedgslddnvesflshddtdprdaggrgmdvsqgfsfkeansvrastskvicchfssdgkllatgghdkkAVLWHTDtlksktnleehsslitdvrfspsmprlatssfdktvrvwdadnpgyslrtfmghsasvmsldfhpnkddlicscdgdgeirywsinngsctrvfkggtaqmrfqPHLGRYLAAAAENVVSILDAETQACRLslqghtkpidsvcwdpsgellasvseDSVRVwtvgsgsegecvhelscngnkfhscvfhptypslLVIGCYQSLelwnmsenkTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK
Flexible Loop (DISEMBL)
MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQLLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGsplpagghllPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAGSVTLDGSMSNsfrgndqvsknqtgrkrkqpvsssgpanssgtantagpspSSAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVEsflshddtdprdagGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTlksktnleehsslitdvrfspsmprlatssfdktvrvWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK
Low Complexity Region (SEG)
MQQILLQRHAqqqqqhqqqhqqqqqqqqqppqqpqqqqpqqqqqRRDGAHllngntngllgnDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMltpqhqqlllaqqnlTSPSASDESRRFRMLLNNRSMSLGKDGLsnsvgdvvsnvgsPLPAGGHLLPRGDTDMLIKLKMAQMHqqqqqqqqqqqqNSNPqqhtlsnqqsqssnhnlhqqDKMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGtantagpspssapstpsthtpGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK
Disordered region (IsUnstruct)
*********************************************************************************************************************************************************************************************LTLKGWPLTGLEPLRSGLL*****FI********************************************************************************************************************************************************************************************************************************************************************************************************TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK***********ITDV************SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL**
Disordered Region (DISOPRED)
***************************************************************************MAT*MY*****************************************************************************KS**NPVL**********************NLTLKGWPLTGLEPL**********************MLTPQ**************************LN*RS*****DGLSNSVGDVVSNVGS*************TDMLIKLKMA***********************************************VTLDGSMSNSFRGNDQVSKNQTGRKRK*P*S*SGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK
Disordered Region (DISEMBL)
**********************************************DGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAG****************TPDIKSEINPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQLLLAQQN*********SRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPRGDTDMLIKLKM******************************************MGPAGSVTLDGSMSNSFRG**********************************************TPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK
Disordered Region (DISPRO)
******QRHAQ************************************************L*NDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAAATGQPSGQVL***AGGMSPQVQARS*QLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQLLLAQQNLT******ESRRFRMLLNN*SMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPRGDTDMLIKLKMAQMHQQQQQ**************************************************RGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQILxxxxxxxxxxxxxxxxxxxxxQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQLLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	792	2.2.26 [Sep-21-2011]
Q9FUY2	931	Transcriptional corepress	yes	no	0.930	0.791	0.749	0.0
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.372	0.193	0.326	1e-31
Q00808	1356	Vegetative incompatibilit	no	no	0.337	0.196	0.314	1e-28
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.364	0.229	0.298	8e-28
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.361	0.169	0.275	3e-24
O22212	554	U4/U6 small nuclear ribon	no	no	0.373	0.534	0.280	4e-24
D3TLL6	411	Lissencephaly-1 homolog O	N/A	no	0.349	0.673	0.255	2e-22
Q8BG40	658	Katanin p80 WD40 repeat-c	yes	no	0.311	0.375	0.296	4e-22
P49695	742	Probable serine/threonine	no	no	0.315	0.336	0.277	4e-22
Q9BVA0	655	Katanin p80 WD40 repeat-c	yes	no	0.311	0.377	0.296	5e-22

>sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2

 Score = 1107 bits (2863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/758 (74%), Positives = 648/758 (85%), Gaps = 21/758 (2%)

Query: 45  RRDGAHLLNGNTNGLLGNDS--LMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQR 102
           RRDG+HL NG+ NGL+GN+S  +MRQNPG+ +++A++ YEE++K+P  R+SLD+AAMK R
Sbjct: 185 RRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVKMPTQRESLDEAAMK-R 243

Query: 103 FGENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEI 162
           FG+N+GQLLDP+HAS +KSAAA+GQP+GQVLH T+GGMSPQVQ R+QQLPGS  DIKSEI
Sbjct: 244 FGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSEI 303

Query: 163 NPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFH 222
           NPVL PR A PEGSL+GIPGSNQG NNLTLKGWPLTG + LRSGLLQQQKPF+Q+ Q FH
Sbjct: 304 NPVLTPRTAVPEGSLIGIPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQS-QSFH 362

Query: 223 QIQMLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVG 281
           Q+ MLTPQHQQ L+LAQQNL S S S+E+RR +MLLNNRSM+LGKDGL +SVGDV+ NVG
Sbjct: 363 QLNMLTPQHQQQLMLAQQNLNSQSVSEENRRLKMLLNNRSMTLGKDGLGSSVGDVLPNVG 422

Query: 282 SPLPAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQH-------TLSNQQS 334
           S L  GG LLPRGDTDML+KLKMA + QQQQ QQQ       PQ          L+N Q 
Sbjct: 423 SSLQPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNPQP 482

Query: 335 QSSNHNLHQQDKMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTA 394
           QSSNH++HQQ+K+G  GS+T+DGS+SNSFRGN+QV KNQ+GRKRKQPVSSSGPANSSGTA
Sbjct: 483 QSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSGTA 542

Query: 395 NTAGPSPSSAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDK 454
           NTAGPSPSSAPSTPSTHTPGDVISMP LPHSG +SK +MMFGT+G GTLTSPSNQL    
Sbjct: 543 NTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQL---- 598

Query: 455 DLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSK 514
                ADMDR VEDGSLDDNVESFLS +D D RDA  R MDVS+GF+F E NSVRAST+K
Sbjct: 599 -----ADMDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTK 653

Query: 515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 574
           V CCHFSSDGK+LA+ GHDKKAVLW+TDT+K KT LEEH+++ITD+RFSPS  RLATSSF
Sbjct: 654 VTCCHFSSDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSF 713

Query: 575 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 634
           DKTVRVWDADN GYSLRTFMGHS+ V SLDFHP KDDLICSCD D EIRYWSINNGSCTR
Sbjct: 714 DKTVRVWDADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTR 773

Query: 635 VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 694
           V+KGG+ Q+RFQP +G+YLAA++ N+V++LD ETQA R SLQGH  PI+SVCWDPSG+ L
Sbjct: 774 VYKGGSTQIRFQPRVGKYLAASSANLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFL 833

Query: 695 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754
           ASVSED V+VWT+G+GSEGECVHELSCNGNKF SCVFHP YPSLLVIGCYQSLELWNMSE
Sbjct: 834 ASVSEDMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVIGCYQSLELWNMSE 893

Query: 755 NKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792
           NKTMTL AHEGLI +LAVST TG VASASHDK VKLWK
Sbjct: 894 NKTMTLPAHEGLITSLAVSTATGLVASASHDKLVKLWK 931

Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  139 bits (349), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 162/312 (51%), Gaps = 17/312 (5%)

Query: 488  DAGG--RGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK 545
            D+GG  R  + + G   KE  + +   S V    FS DGK+LA+G  D+   LW   + +
Sbjct: 883  DSGGIVRFWEAATG---KELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQ 939

Query: 546  SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 605
                 + H+S +  V FSP+   LA+ S D+TVR+WD  + G  L  F GH+  V S+ F
Sbjct: 940  CLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDI-SSGECLYIFQGHTGWVYSVAF 998

Query: 606  HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR---FQPHLGRYLAAAAEN-VV 661
            + +   ++ +  GD  +R W I++  C  +F+G T+ +R   F    G  LA+ +++  V
Sbjct: 999  NLDG-SMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSD-GAMLASGSDDQTV 1056

Query: 662  SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGECVHELS 720
             + D  +  C  +LQGHT  + SV + P G +LAS  +D  VR+W + SG+   C++ L 
Sbjct: 1057 RLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGN---CLYTLQ 1113

Query: 721  CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYV 779
               +     VF P   +L      Q + LW++S  K + TL  H   + A+A S +   +
Sbjct: 1114 GYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATL 1173

Query: 780  ASASHDKFVKLW 791
            AS S D+ V+LW
Sbjct: 1174 ASGSGDQTVRLW 1185

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  129 bits (323), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 140/277 (50%), Gaps = 10/277 (3%)

Query: 520  FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579
            FS DG+ +A+G  D    +W   +      LE H S +  V FSP   R+A+ S DKT++
Sbjct: 933  FSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIK 992

Query: 580  VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG- 638
            +WD  + G   +T  GH  SV S+ F P+   +    D D  I+ W   +G+CT+  +G 
Sbjct: 993  IWDTAS-GTCTQTLEGHGGSVWSVAFSPDGQRVASGSD-DKTIKIWDTASGTCTQTLEGH 1050

Query: 639  -GTAQ-MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS 696
             G  Q + F P   R  + + ++ + I DA +  C  +L+GH   + SV + P G+ +AS
Sbjct: 1051 GGWVQSVVFSPDGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVAS 1110

Query: 697  VSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 755
             S D ++++W   SG+   C   L  +G   HS  F P    +       ++++W+ +  
Sbjct: 1111 GSIDGTIKIWDAASGT---CTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASG 1167

Query: 756  K-TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
              T TL  H G + ++A S +   VAS S DK +K+W
Sbjct: 1168 TCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIW 1204

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score =  126 bits (316), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 150/302 (49%), Gaps = 13/302 (4%)

Query: 495  DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 554
            DVSQG   K   ++++ T  V    FS+DG+ LA+G  D+   +W+  T +       H+
Sbjct: 796  DVSQG---KCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHT 852

Query: 555  SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 614
            + +  + +SP    L + S D+T+++WD       ++T  GH+  V S+ F P+   L C
Sbjct: 853  NSVYSIAYSPDSKILVSGSGDRTIKLWDCQTH-ICIKTLHGHTNEVCSVAFSPDGQTLAC 911

Query: 615  SCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAENVVSILDAETQAC 671
                D  +R W+   G C + + G T     + F P      + + +  V + D +T   
Sbjct: 912  V-SLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKY 970

Query: 672  RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 730
              SL+GHT  I  + + P  + LAS S D SVR+W +   S G+C   L  + +  ++ V
Sbjct: 971  ISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNI---STGQCFQILLEHTDWVYAVV 1027

Query: 731  FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK 789
            FHP    +       +++LWN+S  + + TL+ H   I  +A S +   +ASAS D+ V+
Sbjct: 1028 FHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVR 1087

Query: 790  LW 791
            LW
Sbjct: 1088 LW 1089

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score =  114 bits (285), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 140/298 (46%), Gaps = 12/298 (4%)

Query: 500  FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 559
            F  +E N +      VI    S DG+ +A+G  DK   LW  D    +T L  H   +  
Sbjct: 1060 FEMQERNRLEGHKDGVISISISRDGQTIASGSLDKTIKLWSRDGRLFRT-LNGHEDAVYS 1118

Query: 560  VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 619
            V FSP    +A+   DKT+++W   + G  L+T  GH  +V ++ F P+  +L  S   D
Sbjct: 1119 VSFSPDGQTIASGGSDKTIKLWQTSD-GTLLKTITGHEQTVNNVYFSPDGKNL-ASASSD 1176

Query: 620  GEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSL 675
              I+ W   +G       G   G   +RF P  G+ +AA +E+  V +   +      +L
Sbjct: 1177 HSIKLWDTTSGQLLMTLTGHSAGVITVRFSPD-GQTIAAGSEDKTVKLWHRQDGKLLKTL 1235

Query: 676  QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 734
             GH   ++S+ + P G+ LAS S D ++++W +   ++G+ V  L  + +      F   
Sbjct: 1236 NGHQDWVNSLSFSPDGKTLASASADKTIKLWRI---ADGKLVKTLKGHNDSVWDVNFSSD 1292

Query: 735  YPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792
              ++       +++LWN    +  T T H G + A+    ++  +ASAS D  ++LW+
Sbjct: 1293 GKAIASASRDNTIKLWNRHGIELETFTGHSGGVYAVNFLPDSNIIASASLDNTIRLWQ 1350

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|O22212|PRP4L_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1

 Score =  114 bits (284), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 146/321 (45%), Gaps = 25/321 (7%)

Query: 487 RDAGGRGMDVSQGFSFKEANSVRASTSK------VICCHFSSDGKLLATGGHDKKAVLWH 540
           RD     MD    ++ K A  +    S       +  C FS DGK+LAT        LW 
Sbjct: 224 RDDPDEDMDAETKWALKHAKHMALDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWE 283

Query: 541 ----TDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 596
               T+T+     L++H    TDV FSP    LAT+S D+T ++W  D  G  L+TF GH
Sbjct: 284 MPQVTNTIAV---LKDHKERATDVVFSPVDDCLATASADRTAKLWKTD--GTLLQTFEGH 338

Query: 597 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 653
              +  + FHP+    + +   D   R W IN G+   + +G       + FQ       
Sbjct: 339 LDRLARVAFHPSG-KYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAA 397

Query: 654 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSE 712
           +   +++  + D  T    L  QGH KP+ SV + P+G  LAS  ED+  R+W +     
Sbjct: 398 SCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDL---RM 454

Query: 713 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTAHEGLIAAL 770
            + ++ +  + N      + P     L    Y   + +W+  +   + +L  HE  +A+L
Sbjct: 455 RKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASL 514

Query: 771 AVSTETGYVASASHDKFVKLW 791
            ++ ++  +A+ SHD+ +KLW
Sbjct: 515 DITADSSCIATVSHDRTIKLW 535

Arabidopsis thaliana (taxid: 3702)

>sp|D3TLL6|LIS1_GLOMM Lissencephaly-1 homolog OS=Glossina morsitans morsitans PE=2 SV=1

 Score =  108 bits (269), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 141/309 (45%), Gaps = 32/309 (10%)

Query: 509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 568
           RAS ++VI   F     L+ +   D    +W  +T + + +L+ H+S + D+ F      
Sbjct: 108 RASITRVI---FHPTYSLMLSASEDAVIKIWDFETGEYERSLKGHTSSVQDIAFDSQGKL 164

Query: 569 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 628
           LA+ S D ++++WD       ++T +GH  +V S+ F P   D + S   D  I+ W + 
Sbjct: 165 LASCSADLSIKLWDFQQSYDCVKTMLGHDHNVSSVAFVP-AGDYVLSASRDQTIKMWEVA 223

Query: 629 NGSCTRVFKGGTAQMRF-QPHL-GRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSV 685
            G C + + G    +R  + H+ G   A+ + ++ + I    ++ C+  L+ H   ++ +
Sbjct: 224 TGYCVKTYSGHREWIRMVRVHMDGNIFASCSIDHSIRIWSINSRDCKAELRAHDHTVECI 283

Query: 686 CWDPS--------------------GELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 724
            W P                     G  LAS S D ++RVW VG G    C+  L+ + N
Sbjct: 284 AWAPDISTTHINEAAGSDNKKGHHQGPFLASGSRDKTIRVWDVGVGL---CLFVLTGHDN 340

Query: 725 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS 783
                 FHP    L+     +++ +W++   + M TL AH+    ++    +  YV S S
Sbjct: 341 WVRELTFHPGGKYLVSASDDKTIRVWDLRNKRFMKTLYAHQHFCTSVDFHKKLPYVISGS 400

Query: 784 HDKFVKLWK 792
            D  VK+W+
Sbjct: 401 VDNTVKVWE 409

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.

Glossina morsitans morsitans (taxid: 37546)

>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1

 Score =  107 bits (267), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 13/260 (5%)

Query: 522 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581
           + G+LLATGG D +  LW  +      +L  H+S +  VR +     +   S   ++RVW
Sbjct: 31  ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90

Query: 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--- 638
           D +     LRT MGH A++ SLDFHP   + + S   D  I+ W I    C   ++G   
Sbjct: 91  DLEA-AKILRTLMGHKANICSLDFHP-YGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQ 148

Query: 639 GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 697
               +RF P  G++LA+AA++  V + D           GHT P++ V + P+  LLAS 
Sbjct: 149 AVRCLRFSPD-GKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASG 207

Query: 698 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 756
           S D ++R W +       C+           S +F+P     L  GC  SL ++     +
Sbjct: 208 SSDRTIRFWDLEKFQVVSCIEG---EPGPVRSVLFNPDG-CCLYSGCQDSLRVYGWEPER 263

Query: 757 TM-TLTAHEGLIAALAVSTE 775
               +  + G +A LA+  +
Sbjct: 264 CFDVVLVNWGKVADLAICND 283

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Mus musculus (taxid: 10090)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score =  107 bits (266), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 118/263 (44%), Gaps = 13/263 (4%)

Query: 495 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 554
           DV+ G    E +++   T  V    FS DG LLA+G  D    LW     + +   E H+
Sbjct: 487 DVASG---DELHTLEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHT 543

Query: 555 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 614
             + D+ FSP    +A+ S D T R+W+    G       GH+  V ++ F P+   ++ 
Sbjct: 544 HYVLDIAFSPDGSMVASGSRDGTARLWNVAT-GTEHAVLKGHTDYVYAVAFSPDG-SMVA 601

Query: 615 SCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC 671
           S   DG IR W +  G    V +        + F P  G  L   +++ V + D  +   
Sbjct: 602 SGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPD-GSMLVHGSDSTVHLWDVASGEA 660

Query: 672 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 730
             + +GHT  + +V + P G LLAS S+D ++R+W V +  E      L  +    HS  
Sbjct: 661 LHTFEGHTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHTT---LEGHTEPVHSVA 717

Query: 731 FHPTYPSLLVIGCYQSLELWNMS 753
           FHP   +L       ++ +W ++
Sbjct: 718 FHPEGTTLASASEDGTIRIWPIA 740

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1

 Score =  107 bits (266), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 13/260 (5%)

Query: 522 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581
           + G+LLATGG D +  LW  +      +L  H+S +  VR +     +   S   ++RVW
Sbjct: 31  ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90

Query: 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--- 638
           D +     LRT MGH A++ SLDFHP   + + S   D  I+ W I    C   ++G   
Sbjct: 91  DLEA-AKILRTLMGHKANICSLDFHP-YGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQ 148

Query: 639 GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 697
               +RF P  G++LA+AA++  V + D           GHT P++ V + P+  LLAS 
Sbjct: 149 AVRCLRFSPD-GKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASG 207

Query: 698 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 756
           S D ++R W +       C+           S +F+P     L  GC  SL ++     +
Sbjct: 208 SSDRTIRFWDLEKFQVVSCIEG---EPGPVRSVLFNPDG-CCLYSGCQDSLRVYGWEPER 263

Query: 757 TM-TLTAHEGLIAALAVSTE 775
               +  + G +A LA+  +
Sbjct: 264 CFDVVLVNWGKVADLAICND 283

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	792
356507762	912	PREDICTED: transcriptional corepressor L	0.933	0.810	0.837	0.0
356552535	902	PREDICTED: transcriptional corepressor L	0.925	0.812	0.828	0.0
356507764	903	PREDICTED: transcriptional corepressor L	0.921	0.808	0.826	0.0
356563836	912	PREDICTED: transcriptional corepressor L	0.926	0.804	0.820	0.0
225430178	910	PREDICTED: transcriptional corepressor L	0.941	0.819	0.841	0.0
356552537	893	PREDICTED: transcriptional corepressor L	0.914	0.810	0.817	0.0
357466351	941	NAD(P)H-quinone oxidoreductase subunit [	0.929	0.782	0.774	0.0
449522548	900	PREDICTED: transcriptional corepressor L	0.940	0.827	0.792	0.0
449441950	900	PREDICTED: transcriptional corepressor L	0.940	0.827	0.791	0.0
356515484	892	PREDICTED: transcriptional corepressor L	0.916	0.813	0.799	0.0

>gi|356507762|ref|XP_003522633.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max]

 Score = 1235 bits (3195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/749 (83%), Positives = 672/749 (89%), Gaps = 10/749 (1%)

Query: 46  RDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGE 105
           RD AHLLNG+ NGL+GN       PGTANA+AT+MYEE+LKLP+ RD LDDAAMKQRFGE
Sbjct: 172 RDRAHLLNGSANGLVGN-------PGTANALATKMYEERLKLPLQRDPLDDAAMKQRFGE 224

Query: 106 NMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPV 165
           NMGQLLDPNHAS +KSAAA GQPSGQVLHG AGGMSPQVQAR+QQLPGST DIK EI+PV
Sbjct: 225 NMGQLLDPNHASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPV 284

Query: 166 LNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQ 225
           LNPRAAGPEGSLMG+PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKPF+QAPQPFHQ+Q
Sbjct: 285 LNPRAAGPEGSLMGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQ 344

Query: 226 MLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPL 284
           MLTPQHQQ L+LAQQNL SPSAS+ESRR RMLLNNR++ L KD LSN VGDVVSNVGSPL
Sbjct: 345 MLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPL 404

Query: 285 PAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQ 344
             GG   PRGDTDML+KLK+AQ+ QQQQQ     QQ    QQH LSNQQSQ+SNH++HQQ
Sbjct: 405 QGGGPPFPRGDTDMLMKLKLAQLQQQQQQSSTNAQQQQL-QQHVLSNQQSQTSNHSMHQQ 463

Query: 345 DKMGPAG-SVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSS 403
           DK+G  G SVT+DGSMSNSFRGNDQVSKNQ  RKRKQP SSSGPANSSGTANT GPSPSS
Sbjct: 464 DKVGGGGGSVTVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSS 523

Query: 404 APSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMD 463
           APSTPSTHTPGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+AD+D
Sbjct: 524 APSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADVD 583

Query: 464 RLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD 523
           R VEDGSLD+NVESFLSHDDTDPRD  GR MDVS+GF+F + NSVRASTSKV CCHFSSD
Sbjct: 584 RFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSD 643

Query: 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583
           GKLLA+GGHDK+ VLW+TD+LK K  LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 
Sbjct: 644 GKLLASGGHDKRVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDV 703

Query: 584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM 643
           DNPGYSLRTF GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QM
Sbjct: 704 DNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQM 763

Query: 644 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVR 703
           RFQP LGRYLAAAAEN+VSI D ETQACR SL+GHTKP+D VCWDPSGELLASVSEDSVR
Sbjct: 764 RFQPRLGRYLAAAAENIVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVR 823

Query: 704 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH 763
           VWT+GSGSEGECVHELSCNGNKFH+ VFHPTYPSLLVIGCYQSLELWNMSENKTMTL+AH
Sbjct: 824 VWTLGSGSEGECVHELSCNGNKFHASVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAH 883

Query: 764 EGLIAALAVSTETGYVASASHDKFVKLWK 792
           +GLI +LAVST  G VASASHDKF+KLWK
Sbjct: 884 DGLITSLAVSTVNGLVASASHDKFLKLWK 912

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552535|ref|XP_003544622.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max]

 Score = 1223 bits (3165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/750 (82%), Positives = 672/750 (89%), Gaps = 17/750 (2%)

Query: 46  RDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGE 105
           RD AHLLNG TNGL+GN       PGTANA+AT+MYEE+LKLP+ RDSL+DAAMKQR+G+
Sbjct: 167 RDRAHLLNGGTNGLVGN-------PGTANALATKMYEERLKLPLQRDSLEDAAMKQRYGD 219

Query: 106 NMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPV 165
              QLLDPNHAS +KS+AATGQPSGQVLHG AG MS QVQARSQQLPGSTPDIKSEINPV
Sbjct: 220 ---QLLDPNHASILKSSAATGQPSGQVLHGAAGAMSSQVQARSQQLPGSTPDIKSEINPV 276

Query: 166 LNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKP-FIQAPQPFHQI 224
           LNPRAA PEGSL+ +PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKP FIQ+PQPFHQ+
Sbjct: 277 LNPRAAAPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQPFHQL 336

Query: 225 QMLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSP 283
            MLTPQHQQ L+LAQQNL SPSASD++RR RMLLNNR++ + KDGLSN VGD+VSN+GSP
Sbjct: 337 PMLTPQHQQQLMLAQQNLASPSASDDNRRLRMLLNNRNIGVTKDGLSNPVGDIVSNLGSP 396

Query: 284 LPAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQ 343
           L AGG   PR DTDML+KLK+AQ+  QQQ    QQQQ     QHTLSNQQSQ+SNH++HQ
Sbjct: 397 LQAGGPAFPRSDTDMLMKLKLAQLQHQQQNANPQQQQLQ---QHTLSNQQSQTSNHSMHQ 453

Query: 344 QDKMGPAG-SVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPS 402
           QDKMG  G SV +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSPS
Sbjct: 454 QDKMGGGGGSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPS 512

Query: 403 SAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADM 462
           SAPSTPSTHTPGDV+SMPALPHSG++SKPLMMF  DG+GTLTSPSNQLWDDKDLEL+AD+
Sbjct: 513 SAPSTPSTHTPGDVMSMPALPHSGSSSKPLMMFSADGSGTLTSPSNQLWDDKDLELQADV 572

Query: 463 DRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 522
           DR VEDGSLDDNVESFLSHDDTDPRD  GR MDVS+GF+F E NSVRAST+KV+CCHFSS
Sbjct: 573 DRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEINSVRASTNKVVCCHFSS 632

Query: 523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 582
           DGKLLA+GGHDKKAVLW TD+LK K  LEEH+ LITDVRFSPSMPRLATSS+DKTVRVWD
Sbjct: 633 DGKLLASGGHDKKAVLWFTDSLKQKATLEEHAYLITDVRFSPSMPRLATSSYDKTVRVWD 692

Query: 583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 642
            +NPGYSLRTF GHS+SVMSLDFHPNKDDLICSCD DGEIRYWSINNGSC RV KGGTAQ
Sbjct: 693 VENPGYSLRTFTGHSSSVMSLDFHPNKDDLICSCDVDGEIRYWSINNGSCARVSKGGTAQ 752

Query: 643 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV 702
           MRFQP LGRYLAAAAENVVSILD ETQACR SL+GHTK I SVCWDPSGE LASVSEDSV
Sbjct: 753 MRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSV 812

Query: 703 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 762
           RVWT+GSGSEGECVHELSCNGNKFHSCVFHPTY SLLV+GCYQSLELWNM+ENKTMTL+A
Sbjct: 813 RVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSA 872

Query: 763 HEGLIAALAVSTETGYVASASHDKFVKLWK 792
           HEGLIAALAVST  G VASASHDKFVKLWK
Sbjct: 873 HEGLIAALAVSTVNGLVASASHDKFVKLWK 902

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507764|ref|XP_003522634.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max]

 Score = 1209 bits (3129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/749 (82%), Positives = 663/749 (88%), Gaps = 19/749 (2%)

Query: 46  RDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGE 105
           RD AHLLNG+ NGL+GN       PGTANA+AT+MYEE+LKLP+ RD LDDAAMKQRFGE
Sbjct: 172 RDRAHLLNGSANGLVGN-------PGTANALATKMYEERLKLPLQRDPLDDAAMKQRFGE 224

Query: 106 NMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPV 165
           NMGQLLDPNHAS +KSAAA GQPSGQVLHG AGGMSPQVQAR+QQLPGST DIK EI+PV
Sbjct: 225 NMGQLLDPNHASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPV 284

Query: 166 LNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQ 225
           LNPRAAGPEGSLMG+PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKPF+QAPQPFHQ+Q
Sbjct: 285 LNPRAAGPEGSLMGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQ 344

Query: 226 MLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPL 284
           MLTPQHQQ L+LAQQNL SPSAS+ESRR RMLLNNR++ L KD LSN VGDVVSNVGSPL
Sbjct: 345 MLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPL 404

Query: 285 PAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQ 344
             GG   PRGDTDML+KLK+AQ+ QQQQQ     QQ    QQH LSNQQSQ+SNH++HQQ
Sbjct: 405 QGGGPPFPRGDTDMLMKLKLAQLQQQQQQSSTNAQQQQL-QQHVLSNQQSQTSNHSMHQQ 463

Query: 345 DKMGPAG-SVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSS 403
           DK+G  G SVT+DGSMSNSFRGNDQVSKNQ  RKRKQP SSSGPANSSGTANT GPSPSS
Sbjct: 464 DKVGGGGGSVTVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSS 523

Query: 404 APSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMD 463
           APSTPSTHTPGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQL         AD+D
Sbjct: 524 APSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQL---------ADVD 574

Query: 464 RLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD 523
           R VEDGSLD+NVESFLSHDDTDPRD  GR MDVS+GF+F + NSVRASTSKV CCHFSSD
Sbjct: 575 RFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSD 634

Query: 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583
           GKLLA+GGHDK+ VLW+TD+LK K  LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 
Sbjct: 635 GKLLASGGHDKRVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDV 694

Query: 584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM 643
           DNPGYSLRTF GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QM
Sbjct: 695 DNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQM 754

Query: 644 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVR 703
           RFQP LGRYLAAAAEN+VSI D ETQACR SL+GHTKP+D VCWDPSGELLASVSEDSVR
Sbjct: 755 RFQPRLGRYLAAAAENIVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVR 814

Query: 704 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH 763
           VWT+GSGSEGECVHELSCNGNKFH+ VFHPTYPSLLVIGCYQSLELWNMSENKTMTL+AH
Sbjct: 815 VWTLGSGSEGECVHELSCNGNKFHASVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAH 874

Query: 764 EGLIAALAVSTETGYVASASHDKFVKLWK 792
           +GLI +LAVST  G VASASHDKF+KLWK
Sbjct: 875 DGLITSLAVSTVNGLVASASHDKFLKLWK 903

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563836|ref|XP_003550164.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max]

 Score = 1201 bits (3107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/751 (82%), Positives = 661/751 (88%), Gaps = 17/751 (2%)

Query: 46  RDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGE 105
           RD AHLLNG TNGL+GN       P TANA+AT+MYEE+LKLP+ RDSL+DAAMKQRFG+
Sbjct: 175 RDRAHLLNGGTNGLVGN-------PSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGD 227

Query: 106 NMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPV 165
              Q+LDPNHAS +KS+AATGQPSGQVLHG AG MSPQVQARSQQLPGSTPDIKSEINPV
Sbjct: 228 ---QILDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPV 284

Query: 166 LNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKP-FIQAPQPFHQI 224
           LNPRAAGPEGSL+ +PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKP FIQ+PQ FHQ+
Sbjct: 285 LNPRAAGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQQFHQL 344

Query: 225 QMLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSP 283
            MLTPQHQQ L+LAQQNL SPSASD+SRR RMLLNNR+M + KDGLSN VGD+VSNVGSP
Sbjct: 345 PMLTPQHQQQLMLAQQNLASPSASDDSRRIRMLLNNRNMGVTKDGLSNPVGDIVSNVGSP 404

Query: 284 LPAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQ 343
           L AGG   PR DTDML+KLK+AQ   Q QQQQ         QQHTLSNQQSQ+SNH++HQ
Sbjct: 405 LQAGGPAFPRSDTDMLMKLKLAQ--LQHQQQQNANPPQQQLQQHTLSNQQSQTSNHSMHQ 462

Query: 344 QDKMGPAGS--VTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSP 401
           QDKMG  G   V +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSP
Sbjct: 463 QDKMGGGGGSSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSP 521

Query: 402 SSAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRAD 461
           SSAPSTPSTHTPGDV+SMP LPHSG++SKPLMMF  DGAGTLTSPSNQLWDDKDLEL+AD
Sbjct: 522 SSAPSTPSTHTPGDVMSMPVLPHSGSSSKPLMMFSADGAGTLTSPSNQLWDDKDLELQAD 581

Query: 462 MDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFS 521
           +DR VEDGSLDDNVESFLS DDTD RD  GR MDVS+GF+F E NSVRAST+KV CCHFS
Sbjct: 582 VDRFVEDGSLDDNVESFLSPDDTDLRDTVGRCMDVSKGFTFSEINSVRASTTKVGCCHFS 641

Query: 522 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581
           SDGKLLA+GGHDKKAVLW TD+LK K  LEEH+SLITDVRFSPSMPRLATSS DKTVRVW
Sbjct: 642 SDGKLLASGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSHDKTVRVW 701

Query: 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 641
           D +NPGYSLRTF GHS+ VMSLDFHPNKDDLICSCD DGEIRYWSINNG+C RV KGG  
Sbjct: 702 DVENPGYSLRTFTGHSSPVMSLDFHPNKDDLICSCDADGEIRYWSINNGNCARVSKGGAV 761

Query: 642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS 701
           QMRFQP LGRYLAAAAENVVSILD ETQA R SL+GHTK I SVCWDPSGE LASVSEDS
Sbjct: 762 QMRFQPRLGRYLAAAAENVVSILDVETQASRYSLKGHTKSIRSVCWDPSGEFLASVSEDS 821

Query: 702 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT 761
           VRVWT+GSGSEGECVHELSCNGNKFHSCVFHPTY SLLV+GCYQSLELWNM+ENKTMTL+
Sbjct: 822 VRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLS 881

Query: 762 AHEGLIAALAVSTETGYVASASHDKFVKLWK 792
           AHEGLIAALAVST  G VASASHDKFVKLWK
Sbjct: 882 AHEGLIAALAVSTVNGLVASASHDKFVKLWK 912

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430178|ref|XP_002284900.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera]

 Score = 1199 bits (3103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/757 (84%), Positives = 681/757 (89%), Gaps = 11/757 (1%)

Query: 45  RRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFG 104
           RRDGAHLLNG TNGL+GND LMR NP TANA+AT+MYEE+LKLP+ RDSLDDA MKQRF 
Sbjct: 156 RRDGAHLLNGTTNGLVGNDPLMRTNPATANALATKMYEERLKLPIQRDSLDDATMKQRFS 215

Query: 105 ENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINP 164
           EN+GQLLDPNHA+ +KSAAA GQPSGQVLH +AGGMSPQVQAR+QQLPGSTPDIKSE+NP
Sbjct: 216 ENVGQLLDPNHATILKSAAAAGQPSGQVLHVSAGGMSPQVQARNQQLPGSTPDIKSEMNP 275

Query: 165 VLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQA-PQPFHQ 223
           VLNPRA GPEGSL+GIPGSNQGGNNLTLKGWPLTGL+ LRSGLLQQ KPFIQA PQPFHQ
Sbjct: 276 VLNPRAGGPEGSLIGIPGSNQGGNNLTLKGWPLTGLDQLRSGLLQQPKPFIQAAPQPFHQ 335

Query: 224 IQMLTPQHQQLLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSP 283
           +QML    QQLLLAQQ+LTSP  SDESRR RMLLNNR+M+LGKDG SNS+GDV  NVGSP
Sbjct: 336 LQMLPQHQQQLLLAQQSLTSP-PSDESRRLRMLLNNRNMNLGKDGPSNSIGDV-PNVGSP 393

Query: 284 LPAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSS------ 337
           L  G  +LPRGDT+ML+KLKMAQMH QQQQQQQQQQ ++ PQQ      Q  +       
Sbjct: 394 LQPGCAVLPRGDTEMLMKLKMAQMHHQQQQQQQQQQNSNQPQQQQQQQLQQHALSSQQSQ 453

Query: 338 --NHNLHQQDKMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTAN 395
             NHN+HQQDKMG AGS+T+DGSMSNSFRGNDQ SKNQTGRKRKQPVSSSGPANSSGTAN
Sbjct: 454 SSNHNMHQQDKMGGAGSITVDGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTAN 513

Query: 396 TAGPSPSSAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKD 455
           TAGPSPSSAPSTPSTHTPGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKD
Sbjct: 514 TAGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKD 573

Query: 456 LELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKV 515
           LEL+ADMDR VEDGSLDDNVESFLSHDDTDPRD  GR MDVS+GF+F E +SVRAS SKV
Sbjct: 574 LELQADMDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFTEVSSVRASASKV 633

Query: 516 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 575
           ICCHFSSDGKLLA+GGHDKKAVLW+TDTLK+KT LEEHS LITDVRFSPSMPRLATSSFD
Sbjct: 634 ICCHFSSDGKLLASGGHDKKAVLWYTDTLKTKTTLEEHSMLITDVRFSPSMPRLATSSFD 693

Query: 576 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 635
           KTVRVWDAD+  YSLRTF GHSASVMSLDFHPN+DDLICSCDGDGEIRYW+I NGSC RV
Sbjct: 694 KTVRVWDADSTSYSLRTFTGHSASVMSLDFHPNQDDLICSCDGDGEIRYWNIKNGSCARV 753

Query: 636 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 695
           FKGGTAQMRFQP  GRYLAAAAENVVSILD ETQACR SLQGHTKPI SVCWDPSGE LA
Sbjct: 754 FKGGTAQMRFQPRHGRYLAAAAENVVSILDVETQACRHSLQGHTKPIHSVCWDPSGEFLA 813

Query: 696 SVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 755
           SVSEDSVRVWT+GSG+EGECVHELSCNGNKFHSCVFHPTY SLLVIGCYQSLELWNMSEN
Sbjct: 814 SVSEDSVRVWTLGSGNEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSEN 873

Query: 756 KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792
           KTMTL+AH+GLIAALAVST +G VASASHDK VKLWK
Sbjct: 874 KTMTLSAHDGLIAALAVSTVSGLVASASHDKIVKLWK 910

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552537|ref|XP_003544623.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max]

 Score = 1198 bits (3099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/750 (81%), Positives = 663/750 (88%), Gaps = 26/750 (3%)

Query: 46  RDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGE 105
           RD AHLLNG TNGL+GN       PGTANA+AT+MYEE+LKLP+ RDSL+DAAMKQR+G+
Sbjct: 167 RDRAHLLNGGTNGLVGN-------PGTANALATKMYEERLKLPLQRDSLEDAAMKQRYGD 219

Query: 106 NMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPV 165
              QLLDPNHAS +KS+AATGQPSGQVLHG AG MS QVQARSQQLPGSTPDIKSEINPV
Sbjct: 220 ---QLLDPNHASILKSSAATGQPSGQVLHGAAGAMSSQVQARSQQLPGSTPDIKSEINPV 276

Query: 166 LNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKP-FIQAPQPFHQI 224
           LNPRAA PEGSL+ +PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKP FIQ+PQPFHQ+
Sbjct: 277 LNPRAAAPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQPFHQL 336

Query: 225 QMLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSP 283
            MLTPQHQQ L+LAQQNL SPSASD++RR RMLLNNR++ + KDGLSN VGD+VSN+GSP
Sbjct: 337 PMLTPQHQQQLMLAQQNLASPSASDDNRRLRMLLNNRNIGVTKDGLSNPVGDIVSNLGSP 396

Query: 284 LPAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQ 343
           L AGG   PR DTDML+KLK+AQ+  QQQ    QQQQ     QHTLSNQQSQ+SNH++HQ
Sbjct: 397 LQAGGPAFPRSDTDMLMKLKLAQLQHQQQNANPQQQQLQ---QHTLSNQQSQTSNHSMHQ 453

Query: 344 QDKMGPAG-SVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPS 402
           QDKMG  G SV +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSPS
Sbjct: 454 QDKMGGGGGSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPS 512

Query: 403 SAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADM 462
           SAPSTPSTHTPGDV+SMPALPHSG++SKPLMMF  DG+GTLTSPSNQL         AD+
Sbjct: 513 SAPSTPSTHTPGDVMSMPALPHSGSSSKPLMMFSADGSGTLTSPSNQL---------ADV 563

Query: 463 DRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 522
           DR VEDGSLDDNVESFLSHDDTDPRD  GR MDVS+GF+F E NSVRAST+KV+CCHFSS
Sbjct: 564 DRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEINSVRASTNKVVCCHFSS 623

Query: 523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 582
           DGKLLA+GGHDKKAVLW TD+LK K  LEEH+ LITDVRFSPSMPRLATSS+DKTVRVWD
Sbjct: 624 DGKLLASGGHDKKAVLWFTDSLKQKATLEEHAYLITDVRFSPSMPRLATSSYDKTVRVWD 683

Query: 583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 642
            +NPGYSLRTF GHS+SVMSLDFHPNKDDLICSCD DGEIRYWSINNGSC RV KGGTAQ
Sbjct: 684 VENPGYSLRTFTGHSSSVMSLDFHPNKDDLICSCDVDGEIRYWSINNGSCARVSKGGTAQ 743

Query: 643 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV 702
           MRFQP LGRYLAAAAENVVSILD ETQACR SL+GHTK I SVCWDPSGE LASVSEDSV
Sbjct: 744 MRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSV 803

Query: 703 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 762
           RVWT+GSGSEGECVHELSCNGNKFHSCVFHPTY SLLV+GCYQSLELWNM+ENKTMTL+A
Sbjct: 804 RVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSA 863

Query: 763 HEGLIAALAVSTETGYVASASHDKFVKLWK 792
           HEGLIAALAVST  G VASASHDKFVKLWK
Sbjct: 864 HEGLIAALAVSTVNGLVASASHDKFVKLWK 893

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466351|ref|XP_003603460.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] gi|355492508|gb|AES73711.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]

 Score = 1191 bits (3081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/798 (77%), Positives = 671/798 (84%), Gaps = 62/798 (7%)

Query: 46  RDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGE 105
           RD  HLLNG+ NGL GN       P TANA+AT+MYEE+LK P  RDSLDDAAMKQRFGE
Sbjct: 155 RDRTHLLNGSANGLAGN-------PATANAIATKMYEERLKGPPQRDSLDDAAMKQRFGE 207

Query: 106 NMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPV 165
           NMGQLLDPNHAS +KSAAA GQPSGQVLHGTAGGMSPQVQARSQQLPGST DIKSEINPV
Sbjct: 208 NMGQLLDPNHASILKSAAAGGQPSGQVLHGTAGGMSPQVQARSQQLPGSTTDIKSEINPV 267

Query: 166 LNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQ 225
           LNPRAAGPEGSL+GI GSNQG NNLTLKGWPLTGLE LRSGLLQQQKP++QAPQPFHQ+Q
Sbjct: 268 LNPRAAGPEGSLLGISGSNQGNNNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQ 327

Query: 226 MLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPL 284
           MLTPQHQQ L+LAQQ+L SPSAS+ESRR RMLLNNR++ L KDGLSN  GD++SNVGSPL
Sbjct: 328 MLTPQHQQQLMLAQQSLASPSASEESRRLRMLLNNRNIGLNKDGLSNPGGDMLSNVGSPL 387

Query: 285 PAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQ-----HTLSNQQSQSSNH 339
             GG   PRGDTDML+KLK+AQ+ QQQQQQQ QQQ + N QQ     H LSNQQSQ+SNH
Sbjct: 388 HGGGPPFPRGDTDMLMKLKLAQLQQQQQQQQHQQQSSINAQQQQLQQHALSNQQSQTSNH 447

Query: 340 NLHQQDKMGPAG-SVTLDGSMSNSFRGNDQ------------------------------ 368
           ++HQQDK+G  G SVT+DGSMSNS+RGNDQ                              
Sbjct: 448 SMHQQDKVGGGGGSVTMDGSMSNSYRGNDQIKVQPTEQSEEVLMFCGIPPFACFWSKDEI 507

Query: 369 --------------VSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPG 414
                         VSKNQ GRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPG
Sbjct: 508 LNDGWLHSPIFAIVVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPG 567

Query: 415 DVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDN 474
           D +SMPALPH+ ++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+AD+DR V+DGSLDDN
Sbjct: 568 DAVSMPALPHNSSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELKADVDRFVDDGSLDDN 627

Query: 475 VESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK 534
           VESFLS DDTDPRD  GR MDVS+GF+F + NSVRAS+SK+ CCHFSSDGKLLA+GGHDK
Sbjct: 628 VESFLSQDDTDPRDPVGRCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDK 687

Query: 535 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 594
           KAV+W+ D+LK K  LEEHS+LITDVRFS SMPRLATSSFDKTVRVWD DNPGYSLRTF 
Sbjct: 688 KAVIWYADSLKQKAILEEHSALITDVRFSASMPRLATSSFDKTVRVWDVDNPGYSLRTFT 747

Query: 595 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLA 654
           GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QMRFQP LGRYLA
Sbjct: 748 GHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQMRFQPRLGRYLA 807

Query: 655 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE 714
           AAAEN+VSILD ETQACR SL+GHTK IDSVCWDPSGELLASVSEDSVR+WT+    EGE
Sbjct: 808 AAAENIVSILDVETQACRYSLKGHTKTIDSVCWDPSGELLASVSEDSVRIWTL----EGE 863

Query: 715 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVST 774
           CVHELSCNG+KFHSCVFHPT+PSLLVIGCYQSLELWNM+ENKTMTL+AH+GLI ALAVST
Sbjct: 864 CVHELSCNGSKFHSCVFHPTFPSLLVIGCYQSLELWNMAENKTMTLSAHDGLITALAVST 923

Query: 775 ETGYVASASHDKFVKLWK 792
             G VASASHDKF+KLWK
Sbjct: 924 VNGLVASASHDKFIKLWK 941

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522548|ref|XP_004168288.1| PREDICTED: transcriptional corepressor LEUNIG-like [Cucumis sativus]

 Score = 1189 bits (3075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/753 (79%), Positives = 665/753 (88%), Gaps = 8/753 (1%)

Query: 45  RRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFG 104
           RRDGA LLNG++NG +GND LMRQNPG+ NA+AT+MYE++LKLP+ RDSLDD AMKQR+G
Sbjct: 151 RRDGAQLLNGSSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYG 210

Query: 105 ENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINP 164
           +N+GQLLDPNHAS +KSAAAT Q SGQVLHG+ GGMSPQVQ RSQQLPGSTPDIK+EINP
Sbjct: 211 DNVGQLLDPNHASILKSAAATSQSSGQVLHGSTGGMSPQVQPRSQQLPGSTPDIKTEINP 270

Query: 165 VLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQI 224
           VLNPRAAGPEGSLMGIPGSN GGNNLTLKGWPLTGL+ LRSG+LQQQKPFIQAPQ F Q+
Sbjct: 271 VLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQL 330

Query: 225 QMLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSP 283
           QMLTPQHQQ L+LAQQNLTSPS +D+ RR RMLLN R   + KDGLSNSVGDVV NVGSP
Sbjct: 331 QMLTPQHQQQLMLAQQNLTSPSVNDDGRRLRMLLNTR---MAKDGLSNSVGDVVPNVGSP 387

Query: 284 LPAGGHLLPRGD-TDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQ--HTLSNQQSQSSNHN 340
           L AG  LLPRGD TDM++K+KMAQ+ QQQQQQQ   QQ    Q   HTLSNQQSQSSNHN
Sbjct: 388 LQAGSPLLPRGDNTDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHTLSNQQSQSSNHN 447

Query: 341 LHQQDKMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPS 400
           +HQQ+K+G AGSVT+DGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPS
Sbjct: 448 MHQQEKIGGAGSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPS 507

Query: 401 PSSAPSTPSTHTPGDVISMPALPHSGTTSKPL-MMFGTDGAGTLTSPSNQLWDDKDLELR 459
           PSSAPSTPSTHTPGD ISMPALPHSG++SKPL MMF +DG GT TSPSNQLWDDK+LEL+
Sbjct: 508 PSSAPSTPSTHTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQ 567

Query: 460 ADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCH 519
           ADMDR VEDGSLDDNV+SFLSHDD DPRD  GR MD S+GF+F E NSVRASTSKV  CH
Sbjct: 568 ADMDRYVEDGSLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCH 627

Query: 520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579
           FSSDGKLL +GGHDKKAVLW+T+ LK KT+LEEH++++TDVRFSPSMPRLATSSFD+TVR
Sbjct: 628 FSSDGKLLVSGGHDKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVR 687

Query: 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 639
           VWDADN  YSLRTF GHSASVMSLDFHP KDD ICSCDGDGEIRYW+I NGSC  VFKGG
Sbjct: 688 VWDADNHCYSLRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGG 747

Query: 640 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 699
           T  MRFQP LGRY +A  +N+V+I D ETQA   SL+GHTK + S+CWDPSGE LASVSE
Sbjct: 748 TGPMRFQPRLGRYFSAVVDNIVTIFDVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSE 807

Query: 700 DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT 759
           DSVRVWT+ SG+EGE +HELSCNGNKFHSCVFHPTY +LLVIGCY+SLELWN +ENKTMT
Sbjct: 808 DSVRVWTLASGNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMT 867

Query: 760 LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792
           L+AHEGL+++LAVS  +G VASASHD+F+KLWK
Sbjct: 868 LSAHEGLVSSLAVSAASGLVASASHDRFIKLWK 900

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441950|ref|XP_004138745.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Cucumis sativus]

 Score = 1186 bits (3069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/753 (79%), Positives = 664/753 (88%), Gaps = 8/753 (1%)

Query: 45  RRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFG 104
           RRDGA LLNG++NG +GND LMRQNPG+ NA+AT+MYE++LKLP+ RDSLDD AMKQR+G
Sbjct: 151 RRDGAQLLNGSSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYG 210

Query: 105 ENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINP 164
           +N+GQLLDPNHAS +KSAAAT Q SGQVLHG+ GGMSPQVQ RSQQLPGSTPDIK+EINP
Sbjct: 211 DNVGQLLDPNHASILKSAAATSQSSGQVLHGSTGGMSPQVQPRSQQLPGSTPDIKTEINP 270

Query: 165 VLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQI 224
           VLNPRAAGPEGSLMGIPGSN GGNNLTLKGWPLTGL+ LRSG+LQQQKPFIQAPQ F Q+
Sbjct: 271 VLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQL 330

Query: 225 QMLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSP 283
           QMLTPQHQQ L+LAQQNLTSPS +D+ RR RMLLN R   + KDGLSNSVGDVV NVGSP
Sbjct: 331 QMLTPQHQQQLMLAQQNLTSPSVNDDGRRLRMLLNTR---MAKDGLSNSVGDVVPNVGSP 387

Query: 284 LPAGGHLLPRGD-TDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQ--HTLSNQQSQSSNHN 340
           L AG  LLPRGD TDM++K+KMAQ+ QQQQQQQ   QQ    Q   H LSNQQSQSSNHN
Sbjct: 388 LQAGSPLLPRGDNTDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHN 447

Query: 341 LHQQDKMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPS 400
           +HQQ+K+G AGSVT+DGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPS
Sbjct: 448 MHQQEKIGGAGSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPS 507

Query: 401 PSSAPSTPSTHTPGDVISMPALPHSGTTSKPL-MMFGTDGAGTLTSPSNQLWDDKDLELR 459
           PSSAPSTPSTHTPGD ISMPALPHSG++SKPL MMF +DG GT TSPSNQLWDDK+LEL+
Sbjct: 508 PSSAPSTPSTHTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQ 567

Query: 460 ADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCH 519
           ADMDR VEDGSLDDNV+SFLSHDD DPRD  GR MD S+GF+F E NSVRASTSKV  CH
Sbjct: 568 ADMDRYVEDGSLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCH 627

Query: 520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579
           FSSDGKLL +GGHDKKAVLW+T+ LK KT+LEEH++++TDVRFSPSMPRLATSSFD+TVR
Sbjct: 628 FSSDGKLLVSGGHDKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVR 687

Query: 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 639
           VWDADN  YSLRTF GHSASVMSLDFHP KDD ICSCDGDGEIRYW+I NGSC  VFKGG
Sbjct: 688 VWDADNHCYSLRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGG 747

Query: 640 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 699
           T  MRFQP LGRY +A  +N+V+I D ETQA   SL+GHTK + S+CWDPSGE LASVSE
Sbjct: 748 TGPMRFQPRLGRYFSAVVDNIVTIFDVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSE 807

Query: 700 DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT 759
           DSVRVWT+ SG+EGE +HELSCNGNKFHSCVFHPTY +LLVIGCY+SLELWN +ENKTMT
Sbjct: 808 DSVRVWTLASGNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMT 867

Query: 760 LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792
           L+AHEGL+++LAVS  +G VASASHD+F+KLWK
Sbjct: 868 LSAHEGLVSSLAVSAASGLVASASHDRFIKLWK 900

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515484|ref|XP_003526430.1| PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max]

 Score = 1184 bits (3063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/764 (79%), Positives = 655/764 (85%), Gaps = 38/764 (4%)

Query: 46  RDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGE 105
           RD  HLLNG+ NGL+GN       PGTANA+AT+MYEE+LKLP+ RDSLDDAA KQRFGE
Sbjct: 150 RDRPHLLNGSANGLVGN-------PGTANALATKMYEERLKLPLQRDSLDDAATKQRFGE 202

Query: 106 NMGQLLDPNHASYIKSAAATGQ--------------PSGQVLHGTAGGMSPQVQARSQQL 151
           NMGQLLDPNHA  +KSAAA GQ                            PQVQAR+QQL
Sbjct: 203 NMGQLLDPNHAPILKSAAAPGQPSGQVLHGAAGGMS--------------PQVQARTQQL 248

Query: 152 PGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQ 211
           PGST DIK EI+PVLNPRA GPEGSLMG+PGSN G NNLTLKGWPLTGLE LRSGLLQQQ
Sbjct: 249 PGSTLDIKGEISPVLNPRAVGPEGSLMGMPGSNPGSNNLTLKGWPLTGLEQLRSGLLQQQ 308

Query: 212 KPFIQAPQPFHQIQMLTPQH-QQLLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLS 270
           KPF+QAPQPFHQ+QMLTPQH QQL+LAQQNL SPSAS+ESRR RMLLNNR++ L KDGLS
Sbjct: 309 KPFMQAPQPFHQLQMLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDGLS 368

Query: 271 NSVGDVVSNVGSPLPAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLS 330
           N VGDVVSNVGSPL  GG   PRGDTDML+KLK+AQ+ QQQQQQ     Q    QQHTLS
Sbjct: 369 NPVGDVVSNVGSPLQGGGPPFPRGDTDMLVKLKLAQLQQQQQQQSSTNAQQQQLQQHTLS 428

Query: 331 NQQSQSSNHNLHQQDKM--GPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPA 388
           NQQSQ+SNH++HQQDK+  G  GSVT+DGSMSNSFRGNDQVSKNQ GRKRKQP SSSGPA
Sbjct: 429 NQQSQTSNHSMHQQDKVGGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRKRKQPGSSSGPA 488

Query: 389 NSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSN 448
           NSSGTANT GPSPSSAPSTPSTHTPGDVISMPALPHSG++SKPLMMF TDG GTLTSPSN
Sbjct: 489 NSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSN 548

Query: 449 QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV 508
           QLWDDKDLEL+AD+DR VEDGSLD+NVESFLSHDDTDPRD  GR MDVS+GF+F + NSV
Sbjct: 549 QLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSV 608

Query: 509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 568
           RASTSKV CCHFSSDGKLLA+GGHDKK VLW+TD+LK K  LEEHSSLITDVRFSPSMPR
Sbjct: 609 RASTSKVSCCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPR 668

Query: 569 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 628
           LATSSFDKTVRVWD DNPGYSLRTF GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSIN
Sbjct: 669 LATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSIN 728

Query: 629 NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 688
           NGSC RV KGGT QMRFQP LGRYLAAAAEN+VSI D ETQ CR SL+GHTKP+  VCWD
Sbjct: 729 NGSCARVSKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQVCRYSLKGHTKPVVCVCWD 788

Query: 689 PSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLE 748
           PSGELLASVSEDSVRVWT+GSGS+GECVHELSCNGNKFH  VFHPTYPSLLVIGCYQSLE
Sbjct: 789 PSGELLASVSEDSVRVWTLGSGSDGECVHELSCNGNKFHKSVFHPTYPSLLVIGCYQSLE 848

Query: 749 LWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792
           LWNMSENKTMTL+AH+GLI +LAVST  G VASASHDKF+KLWK
Sbjct: 849 LWNMSENKTMTLSAHDGLITSLAVSTVNGLVASASHDKFLKLWK 892

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	792
DICTYBASE|DDB_G0282189	579	tupA "transcriptional represso	0.457	0.625	0.293	8.2e-26
TAIR|locus:2060560	554	LIS "AT2G41500" [Arabidopsis t	0.377	0.539	0.276	3.1e-24
ASPGD|ASPL0000006214	434	AN6385 [Emericella nidulans (t	0.319	0.582	0.311	3.3e-24
ASPGD|ASPL0000032162	1364	AN8468 [Emericella nidulans (t	0.335	0.195	0.294	4.4e-24
UNIPROTKB|Q8N136	415	WDR69 "Outer row dynein assemb	0.287	0.549	0.307	6.6e-24
UNIPROTKB|Q5M786	334	wdr5 "WD repeat-containing pro	0.347	0.823	0.262	1.1e-23
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.337	0.797	0.265	2.2e-23
UNIPROTKB|Q0P593	415	WDR69 "Outer row dynein assemb	0.279	0.532	0.306	5.9e-23
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.303	0.779	0.275	1.3e-22
UNIPROTKB|Q2KIG2	334	WDR5 "WD repeat-containing pro	0.303	0.718	0.275	1.3e-22

DICTYBASE|DDB_G0282189 tupA "transcriptional repressor TUP1" [Dictyostelium discoideum (taxid:44689)]

 Score = 325 (119.5 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
 Identities = 117/399 (29%), Positives = 183/399 (45%)

Query:   418 SMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVES 477
             S P+L    +   P  M G + +G   S +N   ++ +L  + DM+ + E+     + E 
Sbjct:   191 SFPSLSPLDSNRHPKEM-GNNMSGNSMSMNN---NNNNLNKKPDMEEVKEEDRRRHDTEM 246

Query:   478 FLSHDDTDPRD-AGGRGMDVSQGFSFKEANSVRASTSKVICC-HFSSDGKLLATGGHDKK 535
                +      D   G    V    +    ++++ ++  V+CC +FS+DGK LATG + + 
Sbjct:   247 SEENGKEKGTDWLVGYNPSVQTNLNIDLLHNLQHNS--VVCCVNFSNDGKYLATGCN-RS 303

Query:   536 AVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 590
             A ++  DT K      + S       I  V FSP    LAT + DKTV+VWD        
Sbjct:   304 AQIYDVDTGKKVHAFVDESEKDGDLYIRSVCFSPDGNYLATGAEDKTVKVWDIHTKKIQ- 362

Query:   591 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------KGGTAQM 643
              TF GH   + SLD+  +    I S  GD + + W I  G C           K G   +
Sbjct:   363 HTFYGHELDIYSLDYSSD-GRFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSV 421

Query:   644 RFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S 701
                P  GR +AA + +N+V + DA+T       +GH   + SV + P G+ LAS S D S
Sbjct:   422 AMSPD-GRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGSLDKS 480

Query:   702 VRVWTV-GSGSEGECVHELSCNGNKFH--SCVFHPTYPSLLVIGCY-QSLELWNMSENKT 757
             +++W + GS S   C    + NG+K    S  F P   S L+ G   +S++ W+     T
Sbjct:   481 LKLWDLSGSRSRSRC--RATFNGHKDFVLSVAFSPD-GSWLISGSKDRSVQFWDPRNGTT 537

Query:   758 -MTLTAHEGLIAALAVSTET---GYVASASHDKFVKLWK 792
              M L  H+  + ++A+S +    G  A+ S D   +LWK
Sbjct:   538 HMMLQGHKNSVISVALSPKNNSHGVFATGSGDFRSRLWK 576

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2060560 LIS "AT2G41500" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
 Identities = 88/318 (27%), Positives = 144/318 (45%)

Query:   487 RDAGGRGMDVSQGFSFKEANSVRASTSK------VICCHFSSDGKLLATGGHDKKAVLWH 540
             RD     MD    ++ K A  +    S       +  C FS DGK+LAT        LW 
Sbjct:   224 RDDPDEDMDAETKWALKHAKHMALDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWE 283

Query:   541 TDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS 599
                + +    L++H    TDV FSP    LAT+S D+T ++W  D  G  L+TF GH   
Sbjct:   284 MPQVTNTIAVLKDHKERATDVVFSPVDDCLATASADRTAKLWKTD--GTLLQTFEGHLDR 341

Query:   600 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAA 656
             +  + FHP+    + +   D   R W IN G+   + +G +  +    FQ       +  
Sbjct:   342 LARVAFHPS-GKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCG 400

Query:   657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGEC 715
              +++  + D  T    L  QGH KP+ SV + P+G  LAS  ED+  R+W +        
Sbjct:   401 LDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKS--- 457

Query:   716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSE-NKTMTLTAHEGLIAALAVS 773
             ++ +  + N      + P     L    Y   + +W+  + +   +L  HE  +A+L ++
Sbjct:   458 LYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDIT 517

Query:   774 TETGYVASASHDKFVKLW 791
              ++  +A+ SHD+ +KLW
Sbjct:   518 ADSSCIATVSHDRTIKLW 535

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS;RCA

GO:0001709 "cell fate determination" evidence=IMP

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA;IMP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0016607 "nuclear speck" evidence=IDA

GO:0007267 "cell-cell signaling" evidence=IMP

GO:0009553 "embryo sac development" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000741 "karyogamy" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)]

 Score = 299 (110.3 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 87/279 (31%), Positives = 137/279 (49%)

Query:   520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579
             FS DG+LLA+G +D    LW   +   K  LE HSS +  V FSP+   LA+ S D T++
Sbjct:    49 FSPDGRLLASGSNDTTIKLWDPASGGLKQTLEGHSSSVQSVAFSPNGQLLASGSSDTTIK 108

Query:   580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 639
             +W++ +      T  GHS  V S+ F PN           G++  W+   GS     +G 
Sbjct:   109 LWNSASDSLK-HTMEGHSDRVESVAFSPN-----------GQL--WNPAIGSLKHTIEGH 154

Query:   640 T---AQMRFQPHLGRYLAA-AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 695
             +     + F P  G+ LA+ +AE  + + D+ T   + +L GH+  +  + + P G LLA
Sbjct:   155 SDWVLSVAFSPD-GQLLASGSAEKTIKLWDSATCGLKHTLGGHSNWVLPLVFSPDGRLLA 213

Query:   696 SVSEDS-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS-LELWNMS 753
             S S D+ +++W   SGS     H L  + NK  S  F P    LL  G   + ++LW+ +
Sbjct:   214 SGSNDATIKLWDPPSGS---LKHTLEGHSNKIESLAFSPN-GQLLASGSSDATIKLWDTA 269

Query:   754 ENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
                   TL  H  ++ ++  S ++  + S S D  +KLW
Sbjct:   270 TGSFRHTLKGHSDMVLSVVFSPDSQLLESGSGDNTIKLW 308

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)]

 Score = 325 (119.5 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
 Identities = 82/278 (29%), Positives = 138/278 (49%)

Query:   520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579
             FS DGK L +G +D    +W   T +    L+ HS  +  + FSP    LA+ S+D T+ 
Sbjct:   758 FSPDGKQLVSGSYDDTVKIWDPATGELLQTLDGHSGTVESLAFSPDGKLLASGSYDNTID 817

Query:   580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 639
             +WD+   G  L+TF GH  S+ S+ F P+  +L  + D D  I+ W +  G   +     
Sbjct:   818 LWDSAT-GELLQTFEGHPHSIWSVAFAPDGKELASASD-DSTIKIWDLATGELQQTLDSH 875

Query:   640 TAQMR---FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 695
             +  +R   F P  G+ LA+++ ++ + + +  T   + SL+G +  + SV + P G+ LA
Sbjct:   876 SQSVRSVAFSPD-GKLLASSSLDSTIKVWNPATGELQQSLEGRSGWVKSVAFSPDGKKLA 934

Query:   696 SVSE-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754
             S SE ++V++W   +G   E +  L  +     S  F P    L       +++LWN + 
Sbjct:   935 SGSEKNTVKLWNPATG---ELLQTLEGHSQSVRSVAFSPDGKQLASSSSDTTIKLWNSTT 991

Query:   755 NKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
              +   T   H+  I A+A S +  ++ S S D  +KLW
Sbjct:   992 GELQQTFKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLW 1029

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q8N136 WDR69 "Outer row dynein assembly protein 16 homolog" [Homo sapiens (taxid:9606)]

 Score = 294 (108.6 bits), Expect = 6.6e-24, P = 6.6e-24
 Identities = 74/241 (30%), Positives = 114/241 (47%)

Query:   506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 565
             ++ R  T++++C  F+    L+ATG  D  A LW     +    L  HS+ I  + F+ S
Sbjct:   171 HTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTS 230

Query:   566 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRY 624
               R+ T SFD TV VWDAD  G  +   +GH A + S  F  N D  LI +   D   + 
Sbjct:   231 GDRIITGSFDHTVVVWDADT-GRKVNILIGHCAEISSASF--NWDCSLILTGSMDKTCKL 287

Query:   625 WSINNGSCTRVFKGGTAQMRFQ--PHLGRYLA-AAAENVVSILDAETQACRLSLQGHTKP 681
             W   NG C     G   ++      + G+ +A A+A+    I  A T+ C   L+GH   
Sbjct:   288 WDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGE 347

Query:   682 IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 740
             I  + ++P G  LL   S+ + R+W       G+C+  L  + ++  SC F+  Y   +V
Sbjct:   348 ISKISFNPQGNHLLTGSSDKTARIW---DAQTGQCLQVLEGHTDEIFSCAFN--YKGNIV 402

Query:   741 I 741
             I
Sbjct:   403 I 403

GO:0005929 "cilium" evidence=IEA

UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 281 (104.0 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 77/293 (26%), Positives = 143/293 (48%)

Query:   512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 571
             T  V    FS +G+ LA+   DK   +W     K +  +  H   I+DV +S     L +
Sbjct:    45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104

Query:   572 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 631
             +S DKT+++WD  + G  L+T  GHS  V   +F+P + +LI S   D  +R W +  G 
Sbjct:   105 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162

Query:   632 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 687
             C +     +   + + F       ++++ + +  I D  +  C  +L      P+  V +
Sbjct:   163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222

Query:   688 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF---HPTYPSLLVIGC 743
              P+G+ +LA+  ++++++W     S+G+C+   +C+ N+ + C+F     T    +V G 
Sbjct:   223 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTCHKNEKY-CIFANFSVTGGKWIVSGS 278

Query:   744 YQSLE-LWNMSENKTMT-LTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 792
               +L  +WN+   + +  L  H  ++ + A       +ASA+  +DK +KLWK
Sbjct:   279 EDNLVYIWNLQTKEVVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 278 (102.9 bits), Expect = 2.2e-23, P = 2.2e-23
 Identities = 76/286 (26%), Positives = 139/286 (48%)

Query:   520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579
             FS DGK LA+   DK   +W     K +  LE H   I+D+ +S     + ++S DKT++
Sbjct:    54 FSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASDDKTIK 113

Query:   580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 639
             +WD ++ G  ++T  GH   V  + F+P + +LI S   D  +R W +N G CT++    
Sbjct:   114 IWDVES-GKMVKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGECTKMISAH 171

Query:   640 TAQMRFQPHLGR----YLAAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGE-L 693
             +  +    H  R     ++ + +  V I D  T Q          K +  V + P+G+ +
Sbjct:   172 SDPVT-GVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFV 230

Query:   694 LASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP---TYPSLLVIGCYQSL-EL 749
             LA   ++++R+W+  +  +  C+   + + N+ + C+F     T    +V G   +L  +
Sbjct:   231 LAGTLDNTLRLWSYNNNKK--CLKTYTGHKNEKY-CIFSTFSVTCGKWIVTGSEDNLIYI 287

Query:   750 WNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 792
             +N+   + + TL  HE ++  +A       +AS +   D+ VK+WK
Sbjct:   288 YNLQTREIVQTLAGHEDVVLTVACHPTENIIASGALEKDRSVKIWK 333

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q0P593 WDR69 "Outer row dynein assembly protein 16 homolog" [Bos taurus (taxid:9913)]

 Score = 287 (106.1 bits), Expect = 5.9e-23, P = 5.9e-23
 Identities = 71/232 (30%), Positives = 112/232 (48%)

Query:   506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 565
             ++ R  T++++C  F+    L+ATG  D  A LW   + +    L  HS+ I  + F+ S
Sbjct:   171 HTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTS 230

Query:   566 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRY 624
               R+ T SFD TV VW+AD  G  + T +GH A + S  F  N D  LI +   D   + 
Sbjct:   231 GNRIITGSFDHTVTVWEADT-GRKVYTLIGHCAEISSAVF--NWDCSLILTGSMDKTCKL 287

Query:   625 WSINNGSCTRVFKGGTAQMRFQ--PHLGRYLA-AAAENVVSILDAETQACRLSLQGHTKP 681
             W   NG C     G   ++      + G+ +A A+A+    I  A T+ C   L+GH   
Sbjct:   288 WDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGE 347

Query:   682 IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 732
             I  + ++P G  LL   S+ + R+W       G+C+  L  + ++  SC F+
Sbjct:   348 ISKISFNPQGNRLLTGSSDKTARIW---DAQTGQCLQVLEGHTDEIFSCAFN 396

GO:0005929 "cilium" evidence=IEA

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 271 (100.5 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 70/254 (27%), Positives = 125/254 (49%)

Query:   547 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 606
             K  L  H+  ++ V+FSP+   LA+SS DK +++W A +  +  +T  GH   +  + + 
Sbjct:    12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 70

Query:   607 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 663
              + + L+ + D D  ++ W +++G C +  KG +  +    F P     ++ + +  V I
Sbjct:    71 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129

Query:   664 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 722
              D +T  C  +L  H+ P+ +V ++  G L+ S S D + R+W   SG   +C+  L  +
Sbjct:   130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDD 186

Query:   723 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAALAVSTETG-- 777
              N   S V F P    +L      +L+LW+ S+ K + T T H+       A  + TG  
Sbjct:   187 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 246

Query:   778 YVASASHDKFVKLW 791
             ++ S S D  V +W
Sbjct:   247 WIVSGSEDNLVYIW 260

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 271 (100.5 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 70/254 (27%), Positives = 125/254 (49%)

Query:   547 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 606
             K  L  H+  ++ V+FSP+   LA+SS DK +++W A +  +  +T  GH   +  + + 
Sbjct:    38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 96

Query:   607 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 663
              + + L+ + D D  ++ W +++G C +  KG +  +    F P     ++ + +  V I
Sbjct:    97 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155

Query:   664 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 722
              D +T  C  +L  H+ P+ +V ++  G L+ S S D + R+W   SG   +C+  L  +
Sbjct:   156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDD 212

Query:   723 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAALAVSTETG-- 777
              N   S V F P    +L      +L+LW+ S+ K + T T H+       A  + TG  
Sbjct:   213 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 272

Query:   778 YVASASHDKFVKLW 791
             ++ S S D  V +W
Sbjct:   273 WIVSGSEDNLVYIW 286

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FUY2	LEUNG_ARATH	No assigned EC number	0.7493	0.9305	0.7916	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	792
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-64
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-47
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-39
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-32
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-29
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-08
smart00320	40	smart00320, WD40, WD40 repeats	4e-08
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	5e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-07
smart00320	40	smart00320, WD40, WD40 repeats	2e-07
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	2e-07
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	6e-07
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	1e-06
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	2e-06
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	2e-06
smart00320	40	smart00320, WD40, WD40 repeats	3e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-06
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	4e-06
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	8e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-05
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-05
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	8e-05
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	8e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	9e-05
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	9e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	2e-04
PLN03029	222	PLN03029, PLN03029, type-a response regulator prot	2e-04
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	3e-04
pfam11498	476	pfam11498, Activator_LAG-3, Transcriptional activa	5e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	6e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	8e-04
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	8e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	8e-04
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.001
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	0.001
PRK00191	84	PRK00191, tatA, twin arginine translocase protein	0.001
PRK10927	319	PRK10927, PRK10927, essential cell division protei	0.001
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.002
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.002
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	0.002
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.002
PRK05733	172	PRK05733, PRK05733, single-stranded DNA-binding pr	0.002
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.003
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.003
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.003
PRK10927	319	PRK10927, PRK10927, essential cell division protei	0.003
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.004
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.004
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  214 bits (548), Expect = 8e-64
 Identities = 89/293 (30%), Positives = 147/293 (50%), Gaps = 16/293 (5%)

Query: 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 567
           ++  T  V C  FS DGKLLATG  D    +W  +T +    L+ H+  + DV  S    
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64

Query: 568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 627
            LA+ S DKT+R+WD +  G  +RT  GH++ V S+ F P+   ++ S   D  I+ W +
Sbjct: 65  YLASGSSDKTIRLWDLET-GECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDV 122

Query: 628 NNGSCTRVFKGGTAQ---MRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPID 683
             G C    +G T     + F P  G ++A++  +  + + D  T  C  +L GHT  ++
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181

Query: 684 SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 742
           SV + P GE L S S D ++++W +   S G+C+  L  + N  +S  F P     L+  
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPD--GYLLAS 236

Query: 743 CY--QSLELWNM-SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792
                ++ +W++ +     TL+ H   + +LA S +   +AS S D  +++W 
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  169 bits (430), Expect = 3e-47
 Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 8/210 (3%)

Query: 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 560
           + +   ++   TS V    FS DG++L++   DK   +W  +T K  T L  H+  +  V
Sbjct: 82  TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141

Query: 561 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 620
            FSP    +A+SS D T+++WD    G  + T  GH+  V S+ F P+ + L  S   DG
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGEKL-LSSSSDG 199

Query: 621 EIRYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQ 676
            I+ W ++ G C    +G       + F P  G  LA+ +E   + + D  T  C  +L 
Sbjct: 200 TIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLRTGECVQTLS 258

Query: 677 GHTKPIDSVCWDPSGELLASVSED-SVRVW 705
           GHT  + S+ W P G+ LAS S D ++R+W
Sbjct: 259 GHTNSVTSLAWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  151 bits (381), Expect = 3e-39
 Identities = 89/300 (29%), Positives = 136/300 (45%), Gaps = 18/300 (6%)

Query: 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRF-SP 564
           +R     +    FS DG+LL +G  D    LW  D      K+    H S ++ +   SP
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 565 SMPRLAT--SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 622
               +    SS D TV++WD   PG  +RT  GHS SV SL F P+   L      DG I
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180

Query: 623 RYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAE-NVVSILDAET-QACRLSLQG 677
           + W +  G       G T     + F P  G  +A+ +    + + D  T +  R +L G
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240

Query: 678 HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 736
           H+  + S  + P G LLAS S D ++R+W + S S    +  LS + +   S  F P   
Sbjct: 241 HSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSS--SLLRTLSGHSSSVLSVAFSPDGK 297

Query: 737 SLLVIGCYQSLELWNMSENK---TMTLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 792
            L       ++ LW++   K   ++TL  HEG +++L+ S +   + S  S D  ++LW 
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  126 bits (318), Expect = 4e-32
 Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 11/209 (5%)

Query: 589 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR---F 645
             RT  GH+  V  + F P+   L+ +  GDG I+ W +  G   R  KG T  +R    
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 646 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV 704
                   + +++  + + D ET  C  +L GHT  + SV + P G +L+S S D +++V
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119

Query: 705 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM-TLTA 762
           W V     G+C+  L  + +  +S  F P   + +       +++LW++   K + TLT 
Sbjct: 120 WDV---ETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTG 175

Query: 763 HEGLIAALAVSTETGYVASASHDKFVKLW 791
           H G + ++A S +   + S+S D  +KLW
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  122 bits (306), Expect = 2e-29
 Identities = 68/210 (32%), Positives = 97/210 (46%), Gaps = 5/210 (2%)

Query: 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITD 559
           + K   S  +  S  +   FS DG LLA+G  D    LW   +  S    L  HSS +  
Sbjct: 230 TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289

Query: 560 VRFSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDG 618
           V FSP    LA+ S D TVR+WD +     S  T  GH   V SL F P+   L+     
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349

Query: 619 DGEIRYWSINNGSCTRVFKGGTA--QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 676
           DG IR W +  G   +  +G +    + F P      + + +  V + D  T +   +L 
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Query: 677 GHTKPIDSVCWDPSGELLASVSED-SVRVW 705
           GHT  + S+ + P G+ LAS S D ++R+W
Sbjct: 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  114 bits (284), Expect = 1e-26
 Identities = 77/313 (24%), Positives = 134/313 (42%), Gaps = 24/313 (7%)

Query: 500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-------LKSKTNLEE 552
            S   + +      K       +   LL+ G  +   +L    +         S   L  
Sbjct: 4   NSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRG 63

Query: 553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDF-HPNKD 610
           H   IT + FSP    L + S D T+++WD DN    +++  G H +SV  L    P+ +
Sbjct: 64  HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN 123

Query: 611 DLICSC-DGDGEIRYWSINN-GSCTRVFKGGTA---QMRFQPHLGRYLAAAAE--NVVSI 663
            ++ +    DG ++ W ++  G   R  +G +     + F P  G+ LA+ +     + +
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKL 182

Query: 664 LDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSC 721
            D  T     +L GHT P+ S+ + P G  L+AS S D ++R+W + +G        LS 
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK--LLRSTLSG 240

Query: 722 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TMTLTAHEGLIAALAVSTETGYV 779
           + +   S  F P    L       ++ LW++  +     TL+ H   + ++A S +   +
Sbjct: 241 HSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299

Query: 780 ASASHDKFVKLWK 792
           AS S D  V+LW 
Sbjct: 300 ASGSSDGTVRLWD 312

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  111 bits (277), Expect = 9e-26
 Identities = 78/287 (27%), Positives = 115/287 (40%), Gaps = 48/287 (16%)

Query: 511 STSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPR 568
            T  V    FS DG  L+A+G  D    LW   T K   + L  HS  +    FSP    
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSL 255

Query: 569 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 628
           LA+ S D T+R+WD  +    LRT  GHS+SV+S+ F P+   L  S   DG +R W + 
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA-SGSSDGTVRLWDLE 314

Query: 629 NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 688
            G                                          L+L+GH  P+ S+ + 
Sbjct: 315 TGKLLSS-------------------------------------LTLKGHEGPVSSLSFS 337

Query: 689 PSGELLA-SVSEDS-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 746
           P G LL    S+D  +R+W +     G+ +  L    +   S  F P    +       +
Sbjct: 338 PDGSLLVSGGSDDGTIRLWDL---RTGKPLKTLEG-HSNVLSVSFSPDGRVVSSGSTDGT 393

Query: 747 LELWNMSENK-TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792
           + LW++S       L  H   + +L  S +   +AS S D  ++LW 
Sbjct: 394 VRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 28/82 (34%), Positives = 43/82 (52%)

Query: 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 560
           + K   ++R   + V    FS DG LLA+G  D    +W   T +    L  H++ +T +
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267

Query: 561 RFSPSMPRLATSSFDKTVRVWD 582
            +SP   RLA+ S D T+R+WD
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 28/78 (35%), Positives = 42/78 (53%)

Query: 513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 572
           S V+   FS DG+++++G  D    LW   T     NL+ H+S +T + FSP    LA+ 
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430

Query: 573 SFDKTVRVWDADNPGYSL 590
           S D T+R+WD      S+
Sbjct: 431 SSDNTIRLWDLKTSLKSV 448

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 18/38 (47%), Positives = 22/38 (57%)

Query: 545 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 582
           K    L+ H+  +T V FSP    LA+ S D TVRVWD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 543 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 582
           + +    L+ H+  +T V FSP    LA+ S D T+++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 56.2 bits (135), Expect = 5e-08
 Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 16/217 (7%)

Query: 511 STSKVICC-HFSSDGKLLATGGHDKKAVLWHTDTLKSK--------TNLEEHSSLITDVR 561
           ++S ++C   F  DG+  AT G +KK  ++  +++             L   S L     
Sbjct: 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICW 540

Query: 562 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICSCDGDG 620
            S    ++A+S+F+  V+VWD       L T M  H   V S+D+      L+ S   DG
Sbjct: 541 NSYIKSQVASSNFEGVVQVWDVARS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598

Query: 621 EIRYWSINNGSC--TRVFKGGTAQMRFQPHLGRYLA-AAAENVVSILDAETQACRL-SLQ 676
            ++ WSIN G    T   K     ++F    GR LA  +A++ V   D       L ++ 
Sbjct: 599 SVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658

Query: 677 GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG 713
           GH+K +  V +  S  L++S +++++++W +     G
Sbjct: 659 GHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISG 695

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 671 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 705
              +L+GHT P+ SV + P G LLAS S+D +VRVW
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 668 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 705
           +     +L+GHT P+ SV + P G+ LAS S+D ++++W
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 54.1 bits (131), Expect = 2e-07
 Identities = 17/43 (39%), Positives = 18/43 (41%)

Query: 7   QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 49
                +QQ  Q Q  Q Q Q  Q  QQ Q QQ  QQ Q   G 
Sbjct: 616 NAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGG 658

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 53.0 bits (128), Expect = 6e-07
 Identities = 18/43 (41%), Positives = 22/43 (51%)

Query: 7   QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 49
           Q +AQ+ +Q  QQ Q  Q Q Q   Q  Q Q  QQ QQ + G 
Sbjct: 614 QFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQ 656

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 51.8 bits (125), Expect = 1e-06
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 8   RHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDG 48
           R  Q+Q   Q+  QQ QQ Q    Q    QQ QQ Q ++ G
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQG 649

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 51.1 bits (123), Expect = 2e-06
 Identities = 16/43 (37%), Positives = 19/43 (44%)

Query: 7   QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 49
           ++  QQ Q  Q Q Q  QQ QQ   QQ  QQ    Q  +   A
Sbjct: 621 EQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLA 663

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 51.1 bits (123), Expect = 2e-06
 Identities = 17/43 (39%), Positives = 20/43 (46%)

Query: 7   QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 49
            +  +QQ Q  Q  Q Q Q  QQ  Q   QQQ QQ Q  + G 
Sbjct: 617 AQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQ 659

Length = 820

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 626
            G  L+T  GH+  V S+ F P+    + S   DG I+ W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 626
           G  LRT  GH+  V S+ F P+  +L+ S   DG +R W 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 50.3 bits (121), Expect = 4e-06
 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 1   MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQ--QPQQQQQRRDGAHLLNG 54
            QQ    +   Q  Q  QQ Q QQQ QQ    Q  Q     +QQ  R +      G
Sbjct: 624 GQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGG 679

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 49.1 bits (118), Expect = 8e-06
 Identities = 16/42 (38%), Positives = 17/42 (40%)

Query: 7   QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDG 48
           +   Q QQ    Q Q Q  QQ Q  Q  QQ Q  Q  Q   G
Sbjct: 619 RGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQG 660

Length = 820

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 48.2 bits (115), Expect = 2e-05
 Identities = 17/43 (39%), Positives = 17/43 (39%)

Query: 1   MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 43
             Q  L     QQ    QQ Q     QQ PP  PQ  Q QQQ 
Sbjct: 227 PAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQP 269

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 47.7 bits (113), Expect = 2e-05
 Identities = 18/45 (40%), Positives = 21/45 (46%)

Query: 2   QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 46
           QQ  +Q  AQQ QQ  QQ   Q  QQ  P    QQ    +Q  +R
Sbjct: 214 QQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKR 258

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 540
            K   +++  T  V    FS DG LLA+G  D    +W 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 45.4 bits (107), Expect = 8e-05
 Identities = 20/44 (45%), Positives = 22/44 (50%)

Query: 2   QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 45
           QQ  +Q  AQQ        Q QQQ QQQP Q  QQ  PQ   Q+
Sbjct: 205 QQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQ 248

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 45.8 bits (108), Expect = 8e-05
 Identities = 66/406 (16%), Positives = 105/406 (25%), Gaps = 56/406 (13%)

Query: 1   MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQ-QPQQQQQRRDGAHLLNGNTNGL 59
           MQQ   Q   Q QQ +Q   QQ Q Q Q       QQ    QQQ  + G   + G   G 
Sbjct: 151 MQQSSGQP--QSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQMGQPGMPG---GG 205

Query: 60  LGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPNHASYI 119
                  +  PG       +M ++                +Q+  +  G           
Sbjct: 206 GQGQMQQQGQPGGQQQQNPQMQQQLQN-----------QQQQQMDQQQGPADAQAQMGQQ 254

Query: 120 KSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMG 179
           +      QP                    QQ P   P                    + G
Sbjct: 255 QQGQGGMQPQ-------QMQGGQMQVPMQQQPPQQQP------QQSQLGMLPNQMQQMPG 301

Query: 180 IPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQLLLAQQ 239
                 G                   G   Q+   +       Q  +++   QQL   + 
Sbjct: 302 GGQGGPGQP----------------MGPPPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKL 345

Query: 240 NLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPRGDTDML 299
                    + ++ +   N+ +    +       G  +  +G      G+    G   M 
Sbjct: 346 RNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQMVALGYLNIQ-GNQGGLGANPMQ 404

Query: 300 IK-LKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAGSVTLDGS 358
                M        Q Q  Q     PQ    S     S      Q  +    G +    +
Sbjct: 405 QGQPGMMSSPSPVPQVQTNQSMPQPPQPSVPSPGGPGS------QPPQSVSGGMIPSPPA 458

Query: 359 MSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSA 404
           +  S       S       ++  VS  GP N+ G   ++  SP++ 
Sbjct: 459 LMPSPSPQMSQSPASQRTIQQDMVSPGGPLNTPG--QSSVNSPANP 502

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 45.9 bits (109), Expect = 9e-05
 Identities = 12/45 (26%), Positives = 14/45 (31%)

Query: 2   QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 46
            Q   Q     Q   Q    QQ Q      Q P       QQQ++
Sbjct: 224 SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQ 268

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 13/44 (29%), Positives = 15/44 (34%)

Query: 3   QILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 46
           +  +Q   Q QQQ       Q Q    P Q     QPQ     R
Sbjct: 116 RSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVR 159

Length = 256

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 540
           S +   +++  T  V    FS DGK LA+G  D    LW 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 754 ENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792
                TL  H G + ++A S +   +AS S D  V++W 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 753 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792
           S     TL  H G + ++A S +  Y+AS S D  +KLW 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 45.1 bits (107), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 5/49 (10%)

Query: 1   MQQILLQRHAQQQQQHQQQHQQQQQ-----QQQQPPQQPQQQQPQQQQQ 44
           +QQ      +QQ      Q  QQQQ     Q Q PPQ      P   Q 
Sbjct: 243 LQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQG 291

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 10/40 (25%), Positives = 23/40 (57%)

Query: 7   QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 46
           Q+ A++ QQ Q   Q++ +Q ++     Q+Q+ Q ++  +
Sbjct: 86  QQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAK 125

Length = 387

>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 14/40 (35%), Positives = 27/40 (67%)

Query: 7   QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 46
           ++  Q++Q+  ++ + Q ++Q+QP QQPQ Q   QQQ ++
Sbjct: 154 KQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193

Length = 222

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 13/39 (33%), Positives = 15/39 (38%)

Query: 7   QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 45
           Q     +   Q Q Q QQQQ      QPQ   P +Q   
Sbjct: 110 QTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTA 148

Length = 256

>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3

 Score = 43.0 bits (100), Expect = 5e-04
 Identities = 24/48 (50%), Positives = 28/48 (58%)

Query: 1   MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDG 48
           MQ+I  QR  Q   QHQQQ QQ+ QQQQ   QQ QQ    QQ  + +G
Sbjct: 342 MQRIEQQRQQQIMHQHQQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNG 389

The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 31/176 (17%), Positives = 41/176 (23%), Gaps = 4/176 (2%)

Query: 5   LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDS 64
           L +  AQ QQ+ Q     Q  QQ  P   P +Q    QQ   +          G      
Sbjct: 156 LEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQ 215

Query: 65  LMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAAA 124
             +  P  + A A      +L                           P          A
Sbjct: 216 PQQFLPAPSQAPAQPPLPPQLP-QQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274

Query: 125 TGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGI 180
              P  Q    T     PQ Q      P     +     P    R       L+ +
Sbjct: 275 QPPPQNQ---PTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQL 327

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.3 bits (99), Expect = 8e-04
 Identities = 16/39 (41%), Positives = 18/39 (46%)

Query: 7   QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 45
            RHA +  Q        QQ   Q P Q  QQQPQQQ  +
Sbjct: 197 HRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQ 235

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 10/43 (23%), Positives = 13/43 (30%)

Query: 2   QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 44
           Q     +  Q      Q       +Q   P QPQ   P + Q 
Sbjct: 120 QIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQP 162

Length = 256

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 42.6 bits (100), Expect = 8e-04
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 550 LEEHSSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSLR-------TFMGHSASVM 601
           L+ H+S I D++F+P     LA+ S D T+RVW+  +   S++          GH   + 
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129

Query: 602 SLDFHPNKDDLICSCDGDGEIRYWSINN 629
            +D++P    ++CS   D  +  W I N
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN 157

Length = 568

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 42.2 bits (100), Expect = 0.001
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 21/69 (30%)

Query: 1   MQQILLQRHAQQQQQHQQQHQQQ-----------QQ----------QQQQPPQQPQQQQP 39
           +QQ++      Q  Q  Q   QQ           QQ          Q+Q   Q+ +QQ  
Sbjct: 566 LQQMMENLQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGEQQGQ 625

Query: 40  QQQQQRRDG 48
           Q Q  +  G
Sbjct: 626 QGQGGQGQG 634

Length = 820

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 2   QQILLQRHAQQQQQHQQ--QHQQQQQQQQQPPQQPQQQQPQQQQQ 44
           Q   LQ+        Q      Q  QQQQQPPQ   Q  PQ Q  
Sbjct: 239 QPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPT 283

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 13/48 (27%), Positives = 13/48 (27%)

Query: 2   QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 49
           Q    Q   QQ      Q   Q     Q PQQP   Q  Q        
Sbjct: 208 QGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQM 255

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 11/35 (31%), Positives = 12/35 (34%)

Query: 10  AQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 44
            +   Q QQQ QQQQ        QP     Q    
Sbjct: 115 PRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAP 149

Length = 256

>gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 16/39 (41%), Positives = 19/39 (48%)

Query: 6  LQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 44
          + +  Q  +Q QQQ QQQ    Q    QP  QQ  Q QQ
Sbjct: 45 MSKDDQTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQQ 83

Length = 84

>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 7   QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQ--QPQQQQQR 45
           Q   Q+QQ  Q+Q Q QQ  +QQ   Q  +   Q  QQQ R
Sbjct: 144 QTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTR 184

Length = 319

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 53/237 (22%), Positives = 83/237 (35%), Gaps = 28/237 (11%)

Query: 349 PAGSVTLDGSMSNSFRGNDQVSKNQ---TGRKRKQPVSSSGPANSSGTANTAGPSPSSAP 405
           P GS+   GS   + R  D  S +    T       V S   +       +     +   
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVR- 309

Query: 406 STPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSN----QLWDDKDLELRAD 461
                 T   + S+    H G  S   + F  DG+  ++  S+    +LWD +  +    
Sbjct: 310 -LWDLETGKLLSSLTLKGHEGPVSS--LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366

Query: 462 MDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFS 521
           ++      S+  + +  +    +   D   R  D+S G   +  +     TS+V    FS
Sbjct: 367 LEGHSNVLSVSFSPDGRVV--SSGSTDGTVRLWDLSTGSLLRNLDGH---TSRVTSLDFS 421

Query: 522 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 578
            DGK LA+G  D    LW   T                V FSP    LA+ S D +V
Sbjct: 422 PDGKSLASGSSDNTIRLWDLKTSLKS------------VSFSPDGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 12/45 (26%), Positives = 15/45 (33%)

Query: 2   QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 46
                 +     Q  QQ    QQ Q     QQ     PQ  QQ++
Sbjct: 223 PSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQ 267

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 12/48 (25%), Positives = 18/48 (37%)

Query: 2   QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 49
             + +Q+ AQQQQ      Q Q     +    P Q Q     + +  A
Sbjct: 117 STVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAA 164

Length = 256

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 10/117 (8%)

Query: 536 AVLWHTDTLKSKTN---LEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLR 591
           AVL HTD  K  +N   L      I DV F+P  P +L T+S D T+  W     G +  
Sbjct: 54  AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN 113

Query: 592 T------FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 642
                    GH+  V  + FHP+  +++ S   D  +  W +  G    V K  + Q
Sbjct: 114 ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170

Length = 493

>gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 14/42 (33%), Positives = 16/42 (38%)

Query: 2   QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 43
           Q      +  Q    QQ  + QQ  QQQ    PQQ  PQ   
Sbjct: 120 QGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQPAPQPAA 161

Length = 172

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.9 bits (96), Expect = 0.003
 Identities = 14/46 (30%), Positives = 14/46 (30%), Gaps = 3/46 (6%)

Query: 2   QQILLQRHAQQQQQHQQQHQQQQQ---QQQQPPQQPQQQQPQQQQQ 44
           QQ L        Q        QQ    QQ Q P   QQ  P   Q 
Sbjct: 217 QQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQP 262

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 12/46 (26%), Positives = 15/46 (32%)

Query: 1   MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 46
            Q        Q Q       QQ Q        Q QQ+ PQ ++Q  
Sbjct: 280 NQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLV 325

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 9/41 (21%), Positives = 22/41 (53%)

Query: 5   LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 45
           L Q+ A +Q++ +Q  +++   Q+Q  Q  +  +    +Q+
Sbjct: 92  LQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQK 132

Length = 387

>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 2   QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQ----QQQPQQQQQR 45
           +Q  LQR  Q QQ  +QQ   QQ +  +   Q Q    Q  P Q Q R
Sbjct: 149 RQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPR 196

Length = 319

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 15/33 (45%), Positives = 15/33 (45%)

Query: 12  QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 44
           Q  Q       QQ  Q QP Q PQ QQP Q Q 
Sbjct: 86  QHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQP 118

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 40.7 bits (96), Expect = 0.004
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 13/69 (18%)

Query: 6   LQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD-------GAHLLNGNTNG 58
           L+  A+   +        QQQ QQ   Q QQQ  +Q    RD       G     G+   
Sbjct: 728 LREGARALGE-----AMAQQQGQQQGGQGQQQG-RQGGNGRDPLGRPRGGQGPDGGDRVK 781

Query: 59  LLGNDSLMR 67
           + G     R
Sbjct: 782 VPGEIDYQR 790

Length = 820

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 13/57 (22%), Positives = 16/57 (28%)

Query: 1   MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTN 57
            QQ   Q  AQ   Q+Q        Q Q  P  P QQ       ++           
Sbjct: 265 QQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFR 321

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 15/40 (37%), Positives = 15/40 (37%)

Query: 6   LQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 45
            Q H     Q  QQ  Q Q  Q   PQQP Q QP      
Sbjct: 85  TQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIP 124

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	792
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.98
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.98
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
PTZ00420	568	coronin; Provisional	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG1274	933	consensus WD40 repeat protein [General function pr	99.88
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.88
KOG0646	476	consensus WD40 repeat protein [General function pr	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.88
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.87
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
COG2319	466	FOG: WD40 repeat [General function prediction only	99.86
KOG2055	514	consensus WD40 repeat protein [General function pr	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG4227	609	consensus WD40 repeat protein [General function pr	99.85
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
KOG0267	825	consensus Microtubule severing protein katanin p80	99.84
KOG2096	420	consensus WD40 repeat protein [General function pr	99.84
KOG4328	498	consensus WD40 protein [Function unknown]	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.82
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.82
KOG1273	405	consensus WD40 repeat protein [General function pr	99.82
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.82
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.8
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG1334	559	consensus WD40 repeat protein [General function pr	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.8
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.79
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.76
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.75
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.75
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.75
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.75
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.75
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.75
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.73
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.73
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.72
KOG1963	792	consensus WD40 repeat protein [General function pr	99.72
KOG0649	325	consensus WD40 repeat protein [General function pr	99.71
KOG1188	376	consensus WD40 repeat protein [General function pr	99.71
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.71
KOG0649	325	consensus WD40 repeat protein [General function pr	99.71
KOG2139	445	consensus WD40 repeat protein [General function pr	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.7
KOG4227	609	consensus WD40 repeat protein [General function pr	99.69
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.69
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.69
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.67
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.67
PRK01742	429	tolB translocation protein TolB; Provisional	99.67
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.67
KOG1310	758	consensus WD40 repeat protein [General function pr	99.67
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.66
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.65
PRK03629	429	tolB translocation protein TolB; Provisional	99.65
KOG1963	792	consensus WD40 repeat protein [General function pr	99.64
KOG2315	566	consensus Predicted translation initiation factor	99.64
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.63
KOG2321	703	consensus WD40 repeat protein [General function pr	99.62
PRK05137	435	tolB translocation protein TolB; Provisional	99.62
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.62
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.61
PRK04922	433	tolB translocation protein TolB; Provisional	99.6
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.6
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.6
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.6
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.59
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.59
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.58
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.58
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.58
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.58
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.58
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.57
PRK02889	427	tolB translocation protein TolB; Provisional	99.57
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.55
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.55
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.55
PRK02889	427	tolB translocation protein TolB; Provisional	99.54
PRK04922	433	tolB translocation protein TolB; Provisional	99.52
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.52
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.51
KOG1310	758	consensus WD40 repeat protein [General function pr	99.51
KOG2314	698	consensus Translation initiation factor 3, subunit	99.51
KOG2321	703	consensus WD40 repeat protein [General function pr	99.5
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.5
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.5
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.49
PRK00178	430	tolB translocation protein TolB; Provisional	99.49
PRK05137	435	tolB translocation protein TolB; Provisional	99.48
KOG1334	559	consensus WD40 repeat protein [General function pr	99.47
PRK04792	448	tolB translocation protein TolB; Provisional	99.46
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.45
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.44
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.44
KOG2139	445	consensus WD40 repeat protein [General function pr	99.43
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.42
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.42
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.42
KOG2315	566	consensus Predicted translation initiation factor	99.41
PRK01029	428	tolB translocation protein TolB; Provisional	99.4
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.4
PRK04792	448	tolB translocation protein TolB; Provisional	99.37
PRK00178	430	tolB translocation protein TolB; Provisional	99.37
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.36
PRK01029	428	tolB translocation protein TolB; Provisional	99.34
KOG4547	541	consensus WD40 repeat-containing protein [General	99.32
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.32
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.31
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.29
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.27
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.26
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.25
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.25
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.24
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.24
KOG4547	541	consensus WD40 repeat-containing protein [General	99.23
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.2
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.19
COG4946	668	Uncharacterized protein related to the periplasmic	99.18
COG4946	668	Uncharacterized protein related to the periplasmic	99.18
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.15
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.15
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.15
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.14
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.13
KOG2314	698	consensus Translation initiation factor 3, subunit	99.13
PRK04043	419	tolB translocation protein TolB; Provisional	99.11
PRK04043	419	tolB translocation protein TolB; Provisional	99.11
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.09
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.06
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.06
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.03
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.03
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.03
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.96
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.94
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.93
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.93
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.91
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.91
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.9
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.9
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.9
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.89
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.86
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.84
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.83
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.8
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.8
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.75
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.74
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.71
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.71
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.67
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.65
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.63
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.63
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.62
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.62
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.62
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.6
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.6
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.59
PRK02888	635	nitrous-oxide reductase; Validated	98.58
KOG2695	425	consensus WD40 repeat protein [General function pr	98.58
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.58
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.57
KOG3621	726	consensus WD40 repeat-containing protein [General	98.56
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.53
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.48
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.46
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.45
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.45
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.44
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.44
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.44
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.4
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.39
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.39
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.36
COG3391	381	Uncharacterized conserved protein [Function unknow	98.36
KOG2695	425	consensus WD40 repeat protein [General function pr	98.35
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.35
PRK02888	635	nitrous-oxide reductase; Validated	98.32
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.3
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.29
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.28
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.27
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.27
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.27
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.24
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.23
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.22
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.22
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.21
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.19
COG3391	381	Uncharacterized conserved protein [Function unknow	98.18
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.14
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.06
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.05
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.0
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.97
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.95
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.94
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.91
COG5276	370	Uncharacterized conserved protein [Function unknow	97.86
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.85
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.83
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.81
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.81
PRK10115	686	protease 2; Provisional	97.8
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.78
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.76
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.75
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.74
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.7
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.54
PRK13616	591	lipoprotein LpqB; Provisional	97.52
PRK10115	686	protease 2; Provisional	97.51
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.48
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.44
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.43
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.4
PRK13616	591	lipoprotein LpqB; Provisional	97.4
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.4
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.39
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.37
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.37
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.36
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.35
KOG2395	644	consensus Protein involved in vacuole import and d	97.34
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.33
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.28
PHA02713	557	hypothetical protein; Provisional	97.23
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.19
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.19
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.18
KOG2395	644	consensus Protein involved in vacuole import and d	97.14
KOG3621	726	consensus WD40 repeat-containing protein [General	97.13
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.13
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.12
PRK13684	334	Ycf48-like protein; Provisional	97.09
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.06
COG5276	370	Uncharacterized conserved protein [Function unknow	97.05
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.03
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.0
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.99
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.97
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.88
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.87
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.86
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.84
KOG2444	238	consensus WD40 repeat protein [General function pr	96.84
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.79
PHA02713	557	hypothetical protein; Provisional	96.79
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.79
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.79
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.65
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.59
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.59
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.57
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.46
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	96.38
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.28
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.26
PLN02153	341	epithiospecifier protein	96.24
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.23
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.21
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.15
PHA03098	534	kelch-like protein; Provisional	96.15
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.14
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.07
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.05
KOG2444	238	consensus WD40 repeat protein [General function pr	96.04
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.89
PHA03098	534	kelch-like protein; Provisional	95.84
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.83
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.76
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.74
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	95.69
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.66
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.63
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	95.57
PRK13684	334	Ycf48-like protein; Provisional	95.56
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.52
PLN02153	341	epithiospecifier protein	95.49
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.44
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	95.41
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.36
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.27
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	95.21
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.05
PLN02193	470	nitrile-specifier protein	95.05
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.0
KOG3598	2220	consensus Thyroid hormone receptor-associated prot	94.96
KOG2247	615	consensus WD40 repeat-containing protein [General	94.81
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.75
COG3292	671	Predicted periplasmic ligand-binding sensor domain	94.66
PHA02790	480	Kelch-like protein; Provisional	94.55
PLN02193	470	nitrile-specifier protein	94.54
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.46
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	94.37
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	94.36
COG5167	776	VID27 Protein involved in vacuole import and degra	94.34
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	94.29
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.26
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	94.2
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.14
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.09
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	93.7
COG5167	776	VID27 Protein involved in vacuole import and degra	93.69
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	93.66
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	93.62
COG1770	682	PtrB Protease II [Amino acid transport and metabol	93.51
KOG2247	615	consensus WD40 repeat-containing protein [General	93.48
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.36
PHA02790	480	Kelch-like protein; Provisional	93.36
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	93.33
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	93.27
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.22
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	93.21
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.14
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.13
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	93.08
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	92.98
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.77
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	92.75
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.59
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	92.39
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	92.33
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	92.3
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	92.29
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.25
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	92.19
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	92.08
KOG2109	788	consensus WD40 repeat protein [General function pr	91.91
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.82
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	91.68
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.6
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.58
COG3292	671	Predicted periplasmic ligand-binding sensor domain	91.54
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.46
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	91.35
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.13
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	91.0
KOG3616	1636	consensus Selective LIM binding factor [Transcript	90.86
PRK05560	805	DNA gyrase subunit A; Validated	90.75
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.72
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.49
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.43

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-45  Score=377.55  Aligned_cols=311  Identities=26%  Similarity=0.446  Sum_probs=277.7

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      .-++.|+|||.++++++.+   +|||+.+..                                              ...
T Consensus       118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT----------------------------------------------p~~  151 (480)
T KOG0271|consen  118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTET----------------------------------------------PLF  151 (480)
T ss_pred             EEEEEecCCCceEEecCCCceEEeeccCCCC----------------------------------------------cce
Confidence            3468899999999886655   788776532                                              456


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-EEeccCCCCEEEEEECC-----CCCeEEEEeCCCcEEE
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-TNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRV  580 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~-~~l~~h~~~V~~i~fsp-----dg~~Lasgs~Dg~V~I  580 (792)
                      +.++|...|.|++|+|||+.||+|+.||.|++||.++++.+ ..|.+|...|++++|.|     ..++||+++.||.|+|
T Consensus       152 t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrI  231 (480)
T KOG0271|consen  152 TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRI  231 (480)
T ss_pred             eecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEE
Confidence            78999999999999999999999999999999999988765 56899999999999976     5679999999999999


Q ss_pred             EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEE-----------Ee
Q 003842          581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMR-----------FQ  646 (792)
Q Consensus       581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~-----------~s  646 (792)
                      ||+.. +.++..+.+|...|+|++|-.  ..+|++|+.|++|++|+...|++.+.++++   ++.++           |.
T Consensus       232 Wd~~~-~~~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~  308 (480)
T KOG0271|consen  232 WDTKL-GTCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFD  308 (480)
T ss_pred             EEccC-ceEEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccc
Confidence            99986 789999999999999999984  458999999999999999999998888764   33333           33


Q ss_pred             cCCC-------------------------EEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 003842          647 PHLG-------------------------RYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED  700 (792)
Q Consensus       647 p~~~-------------------------~lla~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d  700 (792)
                      +.+.                         .+++++.|.++.+|+.... +++..+.+|..-|+.+.|+||++|||+++.|
T Consensus       309 ~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD  388 (480)
T KOG0271|consen  309 HTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFD  388 (480)
T ss_pred             cccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecc
Confidence            3333                         4899999999999998655 5888999999999999999999999999999


Q ss_pred             -eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 003842          701 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY  778 (792)
Q Consensus       701 -~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~  778 (792)
                       .|++||-+++   +.+..+.+|-..|+.++|+.|.+.|++|+.|.++++||+++.+.. .+.+|.+.|.++.|+|||..
T Consensus       389 kSVkLW~g~tG---k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~r  465 (480)
T KOG0271|consen  389 KSVKLWDGRTG---KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQR  465 (480)
T ss_pred             cceeeeeCCCc---chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCce
Confidence             9999999888   888999999999999999999999999999999999999999887 78899999999999999999


Q ss_pred             EEEEeCCCcEEEeC
Q 003842          779 VASASHDKFVKLWK  792 (792)
Q Consensus       779 LaSgs~DG~I~IWd  792 (792)
                      +++|+.|..++||.
T Consensus       466 V~sggkdkv~~lw~  479 (480)
T KOG0271|consen  466 VASGGKDKVLRLWR  479 (480)
T ss_pred             eecCCCceEEEeec
Confidence            99999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.2e-43  Score=357.93  Aligned_cols=287  Identities=23%  Similarity=0.406  Sum_probs=261.7

Q ss_pred             eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      .+-..+.||.+.|.|+.|+|+|+.||+|+.|.++++||+.+.....+.++|...|.||+|+|||+.||+|+.||.|++||
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD  185 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence            44556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeEEecccCCCeEEEEEcCC----CCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe---eEEEEecCCCEEEEE
Q 003842          583 ADNPGYSLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAA  655 (792)
Q Consensus       583 l~s~~~~i~~~~~h~~~V~sl~fspd----~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~lla~  655 (792)
                      ..++....+.+.+|...|++++|.|-    ...++++++.||.|+|||+..+.++..+.++.   +|++|--+ ++++++
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg  264 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG  264 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence            99988888999999999999999863    23478899999999999999999999987764   55555433 688889


Q ss_pred             EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc-----------CCC-------------------------CEEEEEeC
Q 003842          656 AAENVVSILDAETQACRLSLQGHTKPIDSVCWD-----------PSG-------------------------ELLASVSE  699 (792)
Q Consensus       656 s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~s-----------pdg-------------------------~~Las~s~  699 (792)
                      +.|++|++|+...+++...+++|..+|+.++.+           +.+                         +.|++|++
T Consensus       265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD  344 (480)
T KOG0271|consen  265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD  344 (480)
T ss_pred             CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence            999999999999999999999999999999876           223                         35999999


Q ss_pred             C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC
Q 003842          700 D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG  777 (792)
Q Consensus       700 d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~  777 (792)
                      | ++.+|+-..  ..+++..+.+|...|..+.|+||+++|++++.|..|++||.++|+.+ .+.+|-..|+.++|+.|.+
T Consensus       345 d~tlflW~p~~--~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR  422 (480)
T KOG0271|consen  345 DFTLFLWNPFK--SKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR  422 (480)
T ss_pred             CceEEEecccc--cccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence            9 999999753  33678889999999999999999999999999999999999999988 7889999999999999999


Q ss_pred             EEEEEeCCCcEEEeC
Q 003842          778 YVASASHDKFVKLWK  792 (792)
Q Consensus       778 ~LaSgs~DG~I~IWd  792 (792)
                      +|++|+.|.++++||
T Consensus       423 LlVS~SkDsTLKvw~  437 (480)
T KOG0271|consen  423 LLVSGSKDSTLKVWD  437 (480)
T ss_pred             EEEEcCCCceEEEEE
Confidence            999999999999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.3e-41  Score=349.10  Aligned_cols=288  Identities=26%  Similarity=0.428  Sum_probs=266.5

Q ss_pred             cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCC--CCeEEEEeCCCc
Q 003842          500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKT  577 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspd--g~~Lasgs~Dg~  577 (792)
                      .....+..--+.+.+|..+.|+.|++.||||+.+|.++||+..+...+.+|.+|...|.++.|+|.  +..||+|+.||+
T Consensus       163 ~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt  242 (459)
T KOG0272|consen  163 QSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGT  242 (459)
T ss_pred             hhhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCc
Confidence            333444455578899999999999999999999999999999999999999999999999999996  568999999999


Q ss_pred             EEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEE
Q 003842          578 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLA  654 (792)
Q Consensus       578 V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla  654 (792)
                      |++|++++ ..++..+.+|...|..++|+|+|.+ |+|++.|.+-++||++++..+...+   .++.+++|.++|..+++
T Consensus       243 vklw~~~~-e~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~t  320 (459)
T KOG0272|consen  243 VKLWKLSQ-ETPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAAT  320 (459)
T ss_pred             eeeeccCC-CcchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchhhHhhcccccccceeEecCCCceeec
Confidence            99999997 6788999999999999999999875 5599999999999999988765544   46788999999999999


Q ss_pred             EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC
Q 003842          655 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP  733 (792)
Q Consensus       655 ~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp  733 (792)
                      |+.|..-+|||+++++++..+.+|..+|.+|+|+|+|..||+|+.| +++|||++..   .++..+..|.+-|+.+.|+|
T Consensus       321 GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p  397 (459)
T KOG0272|consen  321 GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSP  397 (459)
T ss_pred             cCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEecc
Confidence            9999999999999999999999999999999999999999999999 9999999876   56899999999999999999


Q ss_pred             -CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          734 -TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       734 -dg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                       .|.+|++++.|++++||...+..++ .+.+|++.|.++++++|+.+|+|++.|.+|++|.
T Consensus       398 ~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  398 QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence             7889999999999999999999988 7889999999999999999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.4e-39  Score=320.41  Aligned_cols=292  Identities=21%  Similarity=0.375  Sum_probs=264.3

Q ss_pred             CCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCc
Q 003842          498 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT  577 (792)
Q Consensus       498 ~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~  577 (792)
                      ....++..++|++|.++|.|+.|++|.++|++++.||++.|||.-+...+..+.-....|..++|+|.++++|+|+.|..
T Consensus        41 ~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~  120 (343)
T KOG0286|consen   41 GRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNK  120 (343)
T ss_pred             eeeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCce
Confidence            34566777999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCC-----ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEec-C
Q 003842          578 VRVWDADNPG-----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQP-H  648 (792)
Q Consensus       578 V~IWdl~s~~-----~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp-~  648 (792)
                      +.||++.+..     ...+.+.+|.+.+.|+.|..|+ . |++++.|.++.+||++++..+..|.++   +..+.+.| +
T Consensus       121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~-ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~  198 (343)
T KOG0286|consen  121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-H-ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSD  198 (343)
T ss_pred             eEEEecccccccccceeeeeecCccceeEEEEEcCCC-c-eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCC
Confidence            9999998641     3456788999999999999864 3 559999999999999999999998764   56788999 8


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceE
Q 003842          649 LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH  727 (792)
Q Consensus       649 ~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~  727 (792)
                      ++.+++|+.|+..++||++.+.++.+|.+|+..|++|+|.|+|.-|++|++| ++++||++...+ ..+.........|+
T Consensus       199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~git  277 (343)
T KOG0286|consen  199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGIT  277 (343)
T ss_pred             CCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCce
Confidence            8999999999999999999999999999999999999999999999999999 999999998643 22333334456799


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          728 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       728 si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +++|+..|++|++|..|.++.+||.-.++.+ .+.+|++.|+|+..+|||..|+||+.|..||||.
T Consensus       278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  278 SVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999999999999999999999999888877 7889999999999999999999999999999995

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=9.3e-37  Score=305.05  Aligned_cols=286  Identities=24%  Similarity=0.424  Sum_probs=261.9

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl-~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      .+..+.+|++.|+++.|+|+|.+||+|+.|..|.+|++ ...+....+++|.+.|..+.|.+|++.|++++.|++|+.||
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            34557899999999999999999999999999999995 45667788899999999999999999999999999999999


Q ss_pred             CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--eCCeeEEEEecCCCEEEEEEcCCe
Q 003842          583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV  660 (792)
Q Consensus       583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~lla~s~dg~  660 (792)
                      +++ ++.++.+.+|...|++++-..-|..++++++.|+++++||+++..+++.+  +.....+.|...+..+++|+-|+.
T Consensus       119 ~~t-G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~  197 (338)
T KOG0265|consen  119 AET-GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND  197 (338)
T ss_pred             ccc-ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence            998 88899999999999999977778889999999999999999999999988  567888999999999999999999


Q ss_pred             EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc-ceEEEeecCCC----ceEEEEEeCC
Q 003842          661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG-ECVHELSCNGN----KFHSCVFHPT  734 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~-~~i~~~~~~~~----~i~si~fspd  734 (792)
                      |++||++.....+.+.+|...|+.+..+++|.++.+-+.| ++++||++..... .++..+.++..    ....|+|+|+
T Consensus       198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~  277 (338)
T KOG0265|consen  198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN  277 (338)
T ss_pred             eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence            9999999999999999999999999999999999999999 9999999876443 44666666543    3578899999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003842          735 YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL  790 (792)
Q Consensus       735 g~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I  790 (792)
                      +.++-+|+.|..+++||.....++ .+.+|.+.|+++.|+|...+|.+|+.|.+|++
T Consensus       278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            999999999999999999986666 88999999999999999999999999999986

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.5e-37  Score=322.69  Aligned_cols=272  Identities=24%  Similarity=0.390  Sum_probs=249.3

Q ss_pred             CcceEEEEeCCCeeeec---CCCeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003842          429 SKPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA  505 (792)
Q Consensus       429 ~k~~l~~s~Dg~~~~ss---~s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~  505 (792)
                      +.....||.|+..++++   +..++|+..++                                              ..+
T Consensus       177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~----------------------------------------------~~~  210 (459)
T KOG0272|consen  177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQC----------------------------------------------NLL  210 (459)
T ss_pred             cceeeEeecCCCeEEEeecCCceeEeecCCc----------------------------------------------cee
Confidence            45567889999988874   33377766544                                              356


Q ss_pred             eeeecCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          506 NSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspd--g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      .+|++|++.|.++.|+|.  +..||+|+.||+|++|++++...+..+.+|...|..++|+|+|++|+|+|+|.+-++||+
T Consensus       211 ~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~  290 (459)
T KOG0272|consen  211 QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDL  290 (459)
T ss_pred             EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccc
Confidence            789999999999999996  679999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCe
Q 003842          584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENV  660 (792)
Q Consensus       584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~  660 (792)
                      ++ +..+....+|...|.+|+|++||. ++++|+.|..-+|||+++++++..+.++   +..+.|+|+|-.+++|+.|++
T Consensus       291 ~t-k~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt  368 (459)
T KOG0272|consen  291 ET-KSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT  368 (459)
T ss_pred             cc-chhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc
Confidence            98 667777889999999999999986 8889999999999999999999998765   567899999999999999999


Q ss_pred             EEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003842          661 VSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL  738 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L  738 (792)
                      ++|||++....++++.+|..-|+.|+|+| .|.+|++++.| +++||...+.   .++..+.+|.++|.+|.+++++.+|
T Consensus       369 ~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~~~i  445 (459)
T KOG0272|consen  369 CKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDSQAI  445 (459)
T ss_pred             EEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCCceE
Confidence            99999999999999999999999999998 78899999999 9999998766   8899999999999999999999999


Q ss_pred             EEEEcCCeEEEEE
Q 003842          739 LVIGCYQSLELWN  751 (792)
Q Consensus       739 ~sgs~dg~I~IwD  751 (792)
                      ++++.|++|++|.
T Consensus       446 ~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  446 ATSSFDRTIKLWR  458 (459)
T ss_pred             EEeccCceeeecc
Confidence            9999999999995

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.4e-35  Score=310.48  Aligned_cols=296  Identities=23%  Similarity=0.370  Sum_probs=251.1

Q ss_pred             ceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec---cCCCCEEEEEECCCCCeE
Q 003842          493 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRL  569 (792)
Q Consensus       493 ~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~---~h~~~V~~i~fspdg~~L  569 (792)
                      +..+..+.+|+...+++.|..-|.|+.|+|||.++|+++.||+|.|||-.+++.+..|.   +|.+.|.+|+|+||+..|
T Consensus       171 ~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~  250 (603)
T KOG0318|consen  171 TVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF  250 (603)
T ss_pred             eEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE
Confidence            44556788999999999999999999999999999999999999999999999999998   899999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCC------------------------------------------ceeEEecccCCCeEEEEEcC
Q 003842          570 ATSSFDKTVRVWDADNPG------------------------------------------YSLRTFMGHSASVMSLDFHP  607 (792)
Q Consensus       570 asgs~Dg~V~IWdl~s~~------------------------------------------~~i~~~~~h~~~V~sl~fsp  607 (792)
                      ++++.|.+++|||+.+..                                          ..+..+.+|...|+++..++
T Consensus       251 ~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~  330 (603)
T KOG0318|consen  251 LTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP  330 (603)
T ss_pred             EEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC
Confidence            999999999999998531                                          11334558999999999999


Q ss_pred             CCCeEEEEEeCCCcEEEEEcCCCeeE-------------------------------EEe--------------------
Q 003842          608 NKDDLICSCDGDGEIRYWSINNGSCT-------------------------------RVF--------------------  636 (792)
Q Consensus       608 d~~~ll~sgs~Dg~I~iwdl~~~~~~-------------------------------~~~--------------------  636 (792)
                      +++ .|++|+.||.|.-||+.++..-                               +.+                    
T Consensus       331 d~~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~  409 (603)
T KOG0318|consen  331 DGK-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK  409 (603)
T ss_pred             CCC-EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence            985 5569999999999998654311                               000                    


Q ss_pred             ----------------------e-----------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE--EEEecCCCCC
Q 003842          637 ----------------------K-----------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC--RLSLQGHTKP  681 (792)
Q Consensus       637 ----------------------~-----------~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~--~~~l~~h~~~  681 (792)
                                            .           -...+++++|++..+++|+.|+.|+||.+.....  ...+..|.++
T Consensus       410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~  489 (603)
T KOG0318|consen  410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA  489 (603)
T ss_pred             eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCC
Confidence                                  0           0123457889999999999999999999987643  3356679999


Q ss_pred             eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--
Q 003842          682 IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--  758 (792)
Q Consensus       682 V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~--  758 (792)
                      |++|+|+||+.|||+|... .|.+||+.+...  ....+..|..+|.+++|+|+..++++|+-|-.|.||+++.....  
T Consensus       490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~  567 (603)
T KOG0318|consen  490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII  567 (603)
T ss_pred             ceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheE
Confidence            9999999999999999988 999999987643  45556668999999999999999999999999999999876543  


Q ss_pred             EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          759 TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       759 ~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ...+|...|+.+.|-. ...|++.+.|..|++|+
T Consensus       568 iknAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~  600 (603)
T KOG0318|consen  568 IKNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWN  600 (603)
T ss_pred             eccccccCceeEEEec-CceEEeccCcceeEEec
Confidence            4558999999999964 45788999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-35  Score=289.61  Aligned_cols=283  Identities=22%  Similarity=0.370  Sum_probs=244.7

Q ss_pred             eeeeeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECC-----CCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 003842          503 KEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTD-----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK  576 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~-----t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg  576 (792)
                      .....+++|++.|+.++..+. ...|++++.|.+|.+|++.     .|..++.+++|...|..++.++||.+.++++.|+
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence            455678999999999999986 4688999999999999874     5677899999999999999999999999999999


Q ss_pred             cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecC--CC
Q 003842          577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPH--LG  650 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~--~~  650 (792)
                      ++++||+.+ ++..+.|.+|...|.+++|++|+.. |++|+.|.+|++||+..........    +-+.+++|+|+  ..
T Consensus        86 ~lrlWDl~~-g~~t~~f~GH~~dVlsva~s~dn~q-ivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p  163 (315)
T KOG0279|consen   86 TLRLWDLAT-GESTRRFVGHTKDVLSVAFSTDNRQ-IVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP  163 (315)
T ss_pred             eEEEEEecC-CcEEEEEEecCCceEEEEecCCCce-eecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence            999999998 6889999999999999999999764 5599999999999998655444433    34789999999  57


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEE
Q 003842          651 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC  729 (792)
Q Consensus       651 ~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si  729 (792)
                      .|+.++.|++|++||+++.+....+.+|.+.++.++++|||.++++|+.| .+.+||++.+   +++..+ .+...|.++
T Consensus       164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl-~a~~~v~sl  239 (315)
T KOG0279|consen  164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSL-EAFDIVNSL  239 (315)
T ss_pred             EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEec-cCCCeEeeE
Confidence            78889999999999999999999999999999999999999999999999 9999999876   555554 467789999


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCcEEE-----Eccc-----CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          730 VFHPTYPSLLVIGCYQSLELWNMSENKTMT-----LTAH-----EGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-----~~~h-----~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +|+|+..+|+.+. +..|+|||++++.++.     +.+.     .-...+++|++||..|++|-.|+.|++|.
T Consensus       240 ~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  240 CFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             EecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            9999976665554 4569999999988761     1222     33456789999999999999999999994

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5.6e-36  Score=304.65  Aligned_cols=288  Identities=23%  Similarity=0.395  Sum_probs=264.3

Q ss_pred             CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcE
Q 003842          499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV  578 (792)
Q Consensus       499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V  578 (792)
                      -.+++..+.+.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.++....++.+|...|..+++++.-.||++++.|+.|
T Consensus       138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V  217 (460)
T KOG0285|consen  138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV  217 (460)
T ss_pred             cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence            35778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEE
Q 003842          579 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA  655 (792)
Q Consensus       579 ~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~  655 (792)
                      +.||++. .+.++.+.+|-..|.|++.+|.-+ +|++|+.|.++++||+++...+..+.+   .+..+.+.+.+..++++
T Consensus       218 KCwDLe~-nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~  295 (460)
T KOG0285|consen  218 KCWDLEY-NKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG  295 (460)
T ss_pred             EEEechh-hhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence            9999997 788999999999999999999855 667999999999999999998888875   46678889999999999


Q ss_pred             EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003842          656 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY  735 (792)
Q Consensus       656 s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg  735 (792)
                      +.|++|++||++.++...++..|...|.+++.+|....|++++.|.|+-|++..+   ..+..+.+|...|.+++...|+
T Consensus       296 S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~  372 (460)
T KOG0285|consen  296 SHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG  372 (460)
T ss_pred             cCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc
Confidence            9999999999999999999999999999999999999999999999999999776   6666788899999999998876


Q ss_pred             CEEEEEEcCCeEEEEECCCCcEEEE---------cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          736 PSLLVIGCYQSLELWNMSENKTMTL---------TAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       736 ~~L~sgs~dg~I~IwDl~~~~~~~~---------~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                       ++++|+.+|.|.+||.+++..+..         ...+..|.+.+|...|..|++|..|.+|++|+
T Consensus       373 -v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  373 -VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK  437 (460)
T ss_pred             -eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence             688999999999999999876521         12456799999999999999999999999995

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.9e-34  Score=324.46  Aligned_cols=284  Identities=30%  Similarity=0.551  Sum_probs=254.5

Q ss_pred             eeeeecC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          505 ANSVRAS-TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       505 ~~~l~~H-~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      ...+..| ...|.|+.|+++|++|++++.|+.|++|++.+.+  ....+.+|...|.+++|+|++++|++++.|++|+||
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence            4455444 8899999999999999999999999999998887  777888999999999999999999999999999999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcC
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~d  658 (792)
                      |+...+..++++.+|...|++++|+|++ .++++|+.|++|+|||++++++++.+++   .+..++|++++..+++++.|
T Consensus       231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d  309 (456)
T KOG0266|consen  231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD  309 (456)
T ss_pred             eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence            9976678999999999999999999999 7888999999999999999999988865   57788999999999999999


Q ss_pred             CeEEEEECCCCe--EEEEecCCCCC--eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc---eEEEE
Q 003842          659 NVVSILDAETQA--CRLSLQGHTKP--IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK---FHSCV  730 (792)
Q Consensus       659 g~I~i~D~~t~~--~~~~l~~h~~~--V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~---i~si~  730 (792)
                      +.|+|||+.++.  ++..+..+...  +++++|+|++++|++++.| .+++||+..+   .++..+.+|...   +.+..
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFSPT  386 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEeccc
Confidence            999999999998  56777776655  9999999999999999999 9999999877   566666666553   44555


Q ss_pred             EeCCCCEEEEEEcCCeEEEEECCCCcEE-EEccc-CCCeEEEEEeCCCCEEEEEe--CCCcEEEeC
Q 003842          731 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAALAVSTETGYVASAS--HDKFVKLWK  792 (792)
Q Consensus       731 fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h-~~~V~sl~fspdg~~LaSgs--~DG~I~IWd  792 (792)
                      +++.+.++++|+.|+.|++||+.++..+ .+.+| ...|..+.|++...++++++  .|+.|++|+
T Consensus       387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence            6789999999999999999999987766 78889 89999999999999999998  699999995

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.1e-33  Score=295.78  Aligned_cols=282  Identities=30%  Similarity=0.558  Sum_probs=251.8

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      ..+++|.+.|++++|++++++|++++.||.|++|++.+++....+..|...+..+.|++++++|++++.||.|++||+.+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            46779999999999999999999999999999999999988888999999999999999999999999999999999987


Q ss_pred             CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEE
Q 003842          586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVS  662 (792)
Q Consensus       586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~  662 (792)
                       ...+..+..|...|.+++|++++ .++++++.|+.|++||+++++....+.   ..+.++.|++++..+++++.++.|+
T Consensus        83 -~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~  160 (289)
T cd00200          83 -GECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK  160 (289)
T ss_pred             -ccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence             56677788899999999999984 577677789999999999888777765   3478899999977777666699999


Q ss_pred             EEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003842          663 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI  741 (792)
Q Consensus       663 i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sg  741 (792)
                      +||+++++.+..+..|...|.+++|+++++.|++++.+ .|++||++.+   ..+..+..+...+.+++|++++.+++++
T Consensus       161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~  237 (289)
T cd00200         161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG  237 (289)
T ss_pred             EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence            99999999888888999999999999999888888877 9999999875   5666666778899999999998888888


Q ss_pred             EcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          742 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       742 s~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|++||
T Consensus       238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            87999999999987766 5668889999999999999999999999999997

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.7e-34  Score=281.73  Aligned_cols=265  Identities=21%  Similarity=0.440  Sum_probs=238.5

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-eeEEecccCCCeEEEE
Q 003842          526 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSLD  604 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~-~i~~~~~h~~~V~sl~  604 (792)
                      +||++++|.+|++|...+|.+..++....+.|+.+...|+++.||+++.-. ||+||+++... ++.+|.+|...|+++.
T Consensus        12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~Pv~t~e~h~kNVtaVg   90 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNPVATFEGHTKNVTAVG   90 (311)
T ss_pred             EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCceeEEeccCCceEEEE
Confidence            899999999999999999999999998899999999999999999998765 99999998554 8999999999999999


Q ss_pred             EcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC-CCCC
Q 003842          605 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HTKP  681 (792)
Q Consensus       605 fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~-h~~~  681 (792)
                      |..+|+ .+++|++||+++|||++...+-+.|.  .+++++..+|+...|+++..+|.|++||+....+...+.. ....
T Consensus        91 F~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~  169 (311)
T KOG0315|consen   91 FQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTS  169 (311)
T ss_pred             EeecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcc
Confidence            999976 56699999999999999988777654  6789999999999999999999999999998866655543 4567


Q ss_pred             eEEEEEcCCCCEEEEEeCC-eEEEEECCCCC---CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 003842          682 IDSVCWDPSGELLASVSED-SVRVWTVGSGS---EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT  757 (792)
Q Consensus       682 V~sv~~spdg~~Las~s~d-~I~IwDl~s~~---~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~  757 (792)
                      |.++...|||.+|+.+... ..++|++-...   ...++..+..|...+..|.++||+++|++++.|.+++||+.++.-.
T Consensus       170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k  249 (311)
T KOG0315|consen  170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK  249 (311)
T ss_pred             eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee
Confidence            9999999999999988877 99999997642   3567778889999999999999999999999999999999998722


Q ss_pred             --EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          758 --MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       758 --~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                        +.+.+|...+++++||.||.||+||+.|+.+++|+
T Consensus       250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~  286 (311)
T KOG0315|consen  250 LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD  286 (311)
T ss_pred             eEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence              26789999999999999999999999999999996

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-35  Score=301.17  Aligned_cols=289  Identities=26%  Similarity=0.493  Sum_probs=268.5

Q ss_pred             cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEE
Q 003842          500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR  579 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~  579 (792)
                      ..+.+...+.+|...|+.+-|+|+-..+++++.|++|++||+.++++...+++|.+.|.+|+|+..|++|++++.|=.+.
T Consensus        96 pRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~  175 (406)
T KOG0295|consen   96 PRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK  175 (406)
T ss_pred             CCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence            44567778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEE
Q 003842          580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAA  656 (792)
Q Consensus       580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s  656 (792)
                      +||.+.-..+++.+.+|...|.+++|-|.|+ .|++|+.|.+|+.|++.++.|++.|.++   +..++.+.|+..+++++
T Consensus       176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s  254 (406)
T KOG0295|consen  176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS  254 (406)
T ss_pred             heeHHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC
Confidence            9999876678888999999999999999986 5559999999999999999999999876   45577788888888888


Q ss_pred             cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC---------------CCEEEEEeCC-eEEEEECCCCCCcceEEEee
Q 003842          657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPS---------------GELLASVSED-SVRVWTVGSGSEGECVHELS  720 (792)
Q Consensus       657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd---------------g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~  720 (792)
                      .|.+|++|-+.++.+...+..|+.+|.|++|.|.               +.++++++.| +|++||+.++   .|+.++.
T Consensus       255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~  331 (406)
T KOG0295|consen  255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLV  331 (406)
T ss_pred             CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEe
Confidence            8999999999999999999999999999999873               2489999999 9999999888   9999999


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          721 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       721 ~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +|.+.|..++|+|.|+||+++.+|+++++||+.++.++ .+..|...|++++|+.+..|++||+-|-.+++|.
T Consensus       332 ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  332 GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            99999999999999999999999999999999999998 7789999999999999999999999999999995

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.6e-36  Score=310.30  Aligned_cols=275  Identities=22%  Similarity=0.444  Sum_probs=247.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR  591 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~  591 (792)
                      ...|..|.|.|+|+.|++|+..|.+.+|+..+......+..|...|+++.|++++.++++|+.+|.|++|+..-  ..+.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk  173 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVK  173 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhH
Confidence            45689999999999999999999999999988777778889999999999999999999999999999999874  3444


Q ss_pred             Eeccc-CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003842          592 TFMGH-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAE  667 (792)
Q Consensus       592 ~~~~h-~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~I~i~D~~  667 (792)
                      .+..| ...|++++|+|++. .|++|++||+|+|||....+..+.+.++   +.++.|+|..+.+++++.|+.|++||.+
T Consensus       174 ~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr  252 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR  252 (464)
T ss_pred             HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence            55554 48999999999754 6679999999999999988877777664   6789999999999999999999999999


Q ss_pred             CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCC
Q 003842          668 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQ  745 (792)
Q Consensus       668 t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg-~~L~sgs~dg  745 (792)
                      ++.++.++.+|+..|..+.|++++++|++++.| .+++||+++.   +.+..+.+|...++++.|+|-. ..|.+|+.||
T Consensus       253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg  329 (464)
T KOG0284|consen  253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG  329 (464)
T ss_pred             CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence            999999999999999999999999999999999 9999999865   6777888999999999999954 5677889999


Q ss_pred             eEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          746 SLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       746 ~I~IwDl~~~~~~--~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .|..|.+...+.+  ...+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus       330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            9999999865555  4558999999999999999999999999999993

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.4e-33  Score=307.12  Aligned_cols=286  Identities=23%  Similarity=0.386  Sum_probs=244.6

Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV  580 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~D-g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I  580 (792)
                      |..+..+.-...+|..++|+..|++||.|+.. |.+.||++.+...+....+|...|++++++|||.+||||+.||.|+|
T Consensus       297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv  376 (893)
T KOG0291|consen  297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV  376 (893)
T ss_pred             ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence            34455555555677778888888888887654 78889999888888888999999999999999999999999999999


Q ss_pred             EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC----eeEEEEecCCCEEEEEE
Q 003842          581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRYLAAA  656 (792)
Q Consensus       581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~sp~~~~lla~s  656 (792)
                      ||..+ +.++.+|..|...|+.+.|+..++. +++.+-||+|+.||+...++.++|..+    ..+++..|.|..+++|+
T Consensus       377 Wn~~S-gfC~vTFteHts~Vt~v~f~~~g~~-llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~  454 (893)
T KOG0291|consen  377 WNTQS-GFCFVTFTEHTSGVTAVQFTARGNV-LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA  454 (893)
T ss_pred             EeccC-ceEEEEeccCCCceEEEEEEecCCE-EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence            99998 8999999999999999999999764 558899999999999999999998764    46688888888888888


Q ss_pred             cCC-eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 003842          657 AEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT  734 (792)
Q Consensus       657 ~dg-~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspd  734 (792)
                      -|. .|++|++.+|+.+..+.+|+++|.+++|+|++..|++++.| +|++||+-...  ..+.++ .....+..++|+|+
T Consensus       455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl-~i~sdvl~vsfrPd  531 (893)
T KOG0291|consen  455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETL-EIRSDVLAVSFRPD  531 (893)
T ss_pred             cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeE-eeccceeEEEEcCC
Confidence            876 89999999999999999999999999999999999999999 99999986431  122222 24567899999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCcEE-EE--------------------cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          735 YPSLLVIGCYQSLELWNMSENKTM-TL--------------------TAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       735 g~~L~sgs~dg~I~IwDl~~~~~~-~~--------------------~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |+.|++++.||.|.+||...+..+ .+                    .......+.+++++||++|++||..+.|+||+
T Consensus       532 G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~  610 (893)
T KOG0291|consen  532 GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD  610 (893)
T ss_pred             CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence            999999999999999999875433 11                    11235789999999999999999999999985

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.3e-33  Score=272.77  Aligned_cols=279  Identities=23%  Similarity=0.324  Sum_probs=242.7

Q ss_pred             CCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEEC
Q 003842          486 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFS  563 (792)
Q Consensus       486 ~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fs  563 (792)
                      +.|-++|.|....|   .+.+++....+.|..+.+.||+++||+++. -.|++||+.+++  ++.++++|...|++|.|.
T Consensus        17 ~YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~   92 (311)
T KOG0315|consen   17 GYDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQ   92 (311)
T ss_pred             cCcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEe
Confidence            34566777777766   477888888899999999999999999975 479999998765  588999999999999999


Q ss_pred             CCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----eCC
Q 003842          564 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGG  639 (792)
Q Consensus       564 pdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~  639 (792)
                      .+|+.+++|++||+++|||++. ..+-+. ..|..+|+++..+|+-..|| +|+.+|.|++||+.+..+...+    ...
T Consensus        93 ~dgrWMyTgseDgt~kIWdlR~-~~~qR~-~~~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe~~~~  169 (311)
T KOG0315|consen   93 CDGRWMYTGSEDGTVKIWDLRS-LSCQRN-YQHNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPEDDTS  169 (311)
T ss_pred             ecCeEEEecCCCceEEEEeccC-cccchh-ccCCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCCCCcc
Confidence            9999999999999999999997 333344 45789999999999987766 9999999999999988776654    245


Q ss_pred             eeEEEEecCCCEEEEEEcCCeEEEEECCCC------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC
Q 003842          640 TAQMRFQPHLGRYLAAAAENVVSILDAETQ------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE  712 (792)
Q Consensus       640 ~~~v~~sp~~~~lla~s~dg~I~i~D~~t~------~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~  712 (792)
                      +.++.+.+++.+++++...|..++|++-+.      +++..+..|.+.+..+.++||++||++++.| +++||+++..  
T Consensus       170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--  247 (311)
T KOG0315|consen  170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--  247 (311)
T ss_pred             eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--
Confidence            678899999999999999999999998653      4667788999999999999999999999999 9999999765  


Q ss_pred             cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 003842          713 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS  773 (792)
Q Consensus       713 ~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fs  773 (792)
                      .+.-..+.+|...++.|+|+.|+.||++++.|+.+++||+..++.+ ...+|.....|++..
T Consensus       248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            4666778889999999999999999999999999999999999987 667888877777753

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.4e-33  Score=296.55  Aligned_cols=281  Identities=25%  Similarity=0.484  Sum_probs=245.7

Q ss_pred             eeeeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC--CceeE--Eec----------cCCCCEEEEEECCCCCe
Q 003842          504 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDT--LKSKT--NLE----------EHSSLITDVRFSPSMPR  568 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t--~~~~~--~l~----------~h~~~V~~i~fspdg~~  568 (792)
                      .++.++ |+.+|.+++|+|-.. +|++|+.|-..++|++..  .....  .|+          .....|++++|+.+|..
T Consensus       171 ~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~  249 (524)
T KOG0273|consen  171 KAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL  249 (524)
T ss_pred             ceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence            344555 999999999999655 999999999999999863  11111  111          13467999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEE
Q 003842          569 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRF  645 (792)
Q Consensus       569 Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~  645 (792)
                      ||+|++||.++||+..  +..+.++..|+++|.+|.|+.+|.+++ +++.|+++.+||..++.+...|..+   ...+.|
T Consensus       250 LatG~~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk~G~yil-S~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW  326 (524)
T KOG0273|consen  250 LATGSEDGEARIWNKD--GNLISTLGQHKGPIFSLKWNKKGTYIL-SGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW  326 (524)
T ss_pred             EEEeecCcEEEEEecC--chhhhhhhccCCceEEEEEcCCCCEEE-eccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence            9999999999999997  577889999999999999999987555 9999999999999999888776533   345777


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCC
Q 003842          646 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN  724 (792)
Q Consensus       646 sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~  724 (792)
                      ..+ ..+++++.|+.|+||.+....++.++.+|.++|.++.|+|.|.+|+++++| +++||.....   .+++.+..|..
T Consensus       327 ~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hsk  402 (524)
T KOG0273|consen  327 QSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSK  402 (524)
T ss_pred             ecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhcc
Confidence            655 678889999999999999999999999999999999999999999999999 9999998665   78888889999


Q ss_pred             ceEEEEEeCCCC---------EEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          725 KFHSCVFHPTYP---------SLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       725 ~i~si~fspdg~---------~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .|+.+.|+|++.         .|++++.|++|++||+..+.++ .+..|..+|++++|+|+|+|||+|+.||.|.||+
T Consensus       403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws  480 (524)
T KOG0273|consen  403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS  480 (524)
T ss_pred             ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence            999999999654         6899999999999999999988 7779999999999999999999999999999995

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1e-34  Score=306.31  Aligned_cols=290  Identities=19%  Similarity=0.362  Sum_probs=252.5

Q ss_pred             ceeeeeeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcE
Q 003842          501 SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV  578 (792)
Q Consensus       501 ~~~~~~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t-~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V  578 (792)
                      +-+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|+++++|+.|
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l  282 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL  282 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence            4457788999999999999999 899999999999999999876 89999999999999999999999999999999999


Q ss_pred             EEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEE
Q 003842          579 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAA  655 (792)
Q Consensus       579 ~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~  655 (792)
                      ++||+++ +.++..+. ....++|+.|+|++.++|++|+.|+.|+.||+++++.+..+.   +.+..+.|.+++.+++++
T Consensus       283 KlwDtET-G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  283 KLWDTET-GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             eeecccc-ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence            9999998 66666665 455689999999998899999999999999999999887765   457789999999999999


Q ss_pred             EcCCeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC--CceEEEEE
Q 003842          656 AAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVF  731 (792)
Q Consensus       656 s~dg~I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~--~~i~si~f  731 (792)
                      +.|+.++||+.+....+..+.. +.....||..+|++.++++-+.| .|.+|.+...-.....+.+.+|.  +.-..|.|
T Consensus       361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f  440 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF  440 (503)
T ss_pred             ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence            9999999999998866544332 23346688999999999999999 99999976543334444555553  44667899


Q ss_pred             eCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCC-CCEEEEEeCCCcEEEeC
Q 003842          732 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK  792 (792)
Q Consensus       732 spdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspd-g~~LaSgs~DG~I~IWd  792 (792)
                      +|||++|++|..||.+.+||.++-+.+ .+.+|+..|..+.|+|- ...||||+.||.|+|||
T Consensus       441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            999999999999999999999999888 78899999999999994 45899999999999997

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.1e-32  Score=270.46  Aligned_cols=281  Identities=22%  Similarity=0.423  Sum_probs=239.1

Q ss_pred             eeeeeeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCC---CceeEEec-cCCCCEEEEEECCCCCeEEEEeCCC
Q 003842          502 FKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDT---LKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDK  576 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~t---~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg  576 (792)
                      +..+..+.+|.+.|..++|+|- |..||+|+.|+.|+||+...   ..++..+. +|...|++|+|+|.|++|++|++|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            3467889999999999999998 99999999999999999984   45555553 6999999999999999999999999


Q ss_pred             cEEEEeCCCC-CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC---eeEEEeeC---CeeEEEEecCC
Q 003842          577 TVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG---SCTRVFKG---GTAQMRFQPHL  649 (792)
Q Consensus       577 ~V~IWdl~s~-~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~---~~~~~~~~---~~~~v~~sp~~  649 (792)
                      ++.||.-..+ -+++.++.+|...|.|++|+++|+ +||+|+.|..|.||.+..+   ++...+..   .+..+.|+|..
T Consensus        84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~  162 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE  162 (312)
T ss_pred             eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence            9999987642 367889999999999999999976 6779999999999999854   35555554   45678999999


Q ss_pred             CEEEEEEcCCeEEEEECC---CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc
Q 003842          650 GRYLAAAAENVVSILDAE---TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK  725 (792)
Q Consensus       650 ~~lla~s~dg~I~i~D~~---t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~  725 (792)
                      ..|++++.|++|++|+..   ...++.++.+|...|.+++|++.|..|+++++| +|+||.+.+.       .-..|...
T Consensus       163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~  235 (312)
T KOG0645|consen  163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA  235 (312)
T ss_pred             ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence            999999999999999876   347899999999999999999999999999999 9999986532       11235678


Q ss_pred             eEEEEEeCCCCEEEEEEcCCeEEEEECCCC---c---EE--EEcccCCCeEEEEEeCC-CCEEEEEeCCCcEEEeC
Q 003842          726 FHSCVFHPTYPSLLVIGCYQSLELWNMSEN---K---TM--TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK  792 (792)
Q Consensus       726 i~si~fspdg~~L~sgs~dg~I~IwDl~~~---~---~~--~~~~h~~~V~sl~fspd-g~~LaSgs~DG~I~IWd  792 (792)
                      ++.+.|.  ...|++++.|+.|++|.-...   .   .+  ....|+..|+++.|.|. .++|++|++||.|++|.
T Consensus       236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             eEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence            8899998  457999999999999976542   1   11  34478999999999994 67999999999999994

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.4e-34  Score=294.25  Aligned_cols=287  Identities=19%  Similarity=0.320  Sum_probs=242.6

Q ss_pred             CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 003842          499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFD  575 (792)
Q Consensus       499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t---~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D  575 (792)
                      .+++.+...+..|++.|+-+.||++|+|||+++.|.+..+|++..   .+.++++.+|..+|..|.|+||.++|++|+.|
T Consensus       211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~  290 (519)
T KOG0293|consen  211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD  290 (519)
T ss_pred             cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence            456778889999999999999999999999999999999998754   35588899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCceeEEec-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCC
Q 003842          576 KTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLG  650 (792)
Q Consensus       576 g~V~IWdl~s~~~~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~  650 (792)
                      ..+++||+.+ +.....+. ++...+.+++|.||+..++ +|+.|+.|..||++.. ....++    ..+.++++.+||+
T Consensus       291 e~~~lwDv~t-gd~~~~y~~~~~~S~~sc~W~pDg~~~V-~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk  367 (519)
T KOG0293|consen  291 EVLSLWDVDT-GDLRHLYPSGLGFSVSSCAWCPDGFRFV-TGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGK  367 (519)
T ss_pred             HheeeccCCc-chhhhhcccCcCCCcceeEEccCCceeE-ecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCc
Confidence            9999999998 44444443 4568899999999987655 9999999999999743 333332    3467899999999


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc--eE
Q 003842          651 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FH  727 (792)
Q Consensus       651 ~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~--i~  727 (792)
                      ++++.+.|..|++|+.++...+..+. ...+|++++++.|++++++.-.+ .|.+||+...   +.+..+.+|...  +.
T Consensus       368 ~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiI  443 (519)
T KOG0293|consen  368 YVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFII  443 (519)
T ss_pred             EEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEE
Confidence            99999999999999998876665444 45789999999999999988888 9999999743   666677776544  33


Q ss_pred             EEEEe-CCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeC-CCCEEEEEeCCCcEEEeC
Q 003842          728 SCVFH-PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK  792 (792)
Q Consensus       728 si~fs-pdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fsp-dg~~LaSgs~DG~I~IWd  792 (792)
                      .-||. .+..+|++|+.|+.|+||+..+++++ .+.+|...|+|++|+| +-.++|+||+||+||||.
T Consensus       444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG  511 (519)
T ss_pred             EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence            33444 45589999999999999999999988 7889999999999999 456899999999999994

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.4e-33  Score=290.69  Aligned_cols=274  Identities=23%  Similarity=0.379  Sum_probs=251.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR  591 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~  591 (792)
                      +..|+|++|+.+|.+||+|+.||.++||+. +|..+.+|..|.++|.+|.|+.+|.||++++.|+++.+||..+ +....
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~-g~~~q  312 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-GTVKQ  312 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC-ceEEE
Confidence            467999999999999999999999999995 5788899999999999999999999999999999999999987 67777


Q ss_pred             EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003842          592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAET  668 (792)
Q Consensus       592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I~i~D~~t  668 (792)
                      .+.-|..+-.+|.|-.+.  -|++++.|+.|+++.+.....+.++.+   .+.++.|.|.+..|++++.|++++||....
T Consensus       313 ~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             eeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence            788888887889997654  477999999999999998888887754   578899999999999999999999999999


Q ss_pred             CeEEEEecCCCCCeEEEEEcCCC---------CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003842          669 QACRLSLQGHTKPIDSVCWDPSG---------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL  738 (792)
Q Consensus       669 ~~~~~~l~~h~~~V~sv~~spdg---------~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L  738 (792)
                      ..+...+.+|...|..+.|+|+|         ..|++++.| +|++||+..+   .+++.+..|..+|++++|+|+|+|+
T Consensus       391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~yl  467 (524)
T KOG0273|consen  391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYL  467 (524)
T ss_pred             CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEE
Confidence            99999999999999999999964         478888888 9999999877   8999999999999999999999999


Q ss_pred             EEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          739 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       739 ~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ++|+.||.|+||+..+++++......+.|..++|+.+|.+|..+-.||.|++-|
T Consensus       468 AsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld  521 (524)
T KOG0273|consen  468 ASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLD  521 (524)
T ss_pred             EecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence            999999999999999999998888888899999999999999999999998754

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.6e-32  Score=272.11  Aligned_cols=271  Identities=24%  Similarity=0.431  Sum_probs=238.9

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|++|.+.+++++.+   .|||.-+..                                              .+.
T Consensus        58 i~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn----------------------------------------------K~h   91 (343)
T KOG0286|consen   58 IYAMDWSTDSRRIVSASQDGKLIVWDSFTTN----------------------------------------------KVH   91 (343)
T ss_pred             eeeeEecCCcCeEEeeccCCeEEEEEccccc----------------------------------------------cee
Confidence            4568899999998887766   668876543                                              223


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC------ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV  580 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~------~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I  580 (792)
                      .+.-....|..++|+|.|+++|+|+-|+...||++.+.      ...+.+.+|.+.+.|+.|.+| ..|+|++.|.++.+
T Consensus        92 aipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCal  170 (343)
T KOG0286|consen   92 AIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCAL  170 (343)
T ss_pred             EEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEE
Confidence            34445667999999999999999999999999999854      456678999999999999985 48999999999999


Q ss_pred             EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEc
Q 003842          581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~  657 (792)
                      ||+++ +..+..|.+|.+.|.+|++.|...+.|++|+-|+..++||++.+.++..|.+   .++.++|.|++..+++|+.
T Consensus       171 WDie~-g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD  249 (343)
T KOG0286|consen  171 WDIET-GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD  249 (343)
T ss_pred             EEccc-ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC
Confidence            99998 7889999999999999999995566788999999999999999999999876   4678999999999999999


Q ss_pred             CCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 003842          658 ENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT  734 (792)
Q Consensus       658 dg~I~i~D~~t~~~~~~l~~--h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspd  734 (792)
                      |++.++||++....+..+..  ...+|++++|+..|++|++|..| ++.+||.-.+   +.+..+.+|++.|.++..+||
T Consensus       250 D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~s~D  326 (343)
T KOG0286|consen  250 DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGVSPD  326 (343)
T ss_pred             CceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEECCC
Confidence            99999999999887777763  34579999999999999999999 9999999766   778888999999999999999


Q ss_pred             CCEEEEEEcCCeEEEEE
Q 003842          735 YPSLLVIGCYQSLELWN  751 (792)
Q Consensus       735 g~~L~sgs~dg~I~IwD  751 (792)
                      |..+++|+.|..|+||.
T Consensus       327 G~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  327 GMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CcEEEecchhHheeecC
Confidence            99999999999999994

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-32  Score=302.47  Aligned_cols=347  Identities=19%  Similarity=0.269  Sum_probs=284.2

Q ss_pred             CCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeeeeecCCCCe
Q 003842          439 GAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKV  515 (792)
Q Consensus       439 g~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V  515 (792)
                      |.++++.+..   ++||.+.++.+..-.... ..+++....  .........-......-+.+..+++..+.+-|.++.|
T Consensus       250 ~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~--~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI  326 (775)
T KOG0319|consen  250 GEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLA--IESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEI  326 (775)
T ss_pred             ceEEEEecCCceEEEEecccchhhhhhccCC-chhhhccee--ccccCceEEEEccceEEEEEccccEEehhhcCCchhh
Confidence            5577665544   889999987665433321 111111100  0000000000011112222344566778888999999


Q ss_pred             EEEEEc-CCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC---ceeE
Q 003842          516 ICCHFS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG---YSLR  591 (792)
Q Consensus       516 ~~lafs-pdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~---~~i~  591 (792)
                      .+++|- |+.++||++++.+.+++|++.+..+. .+.+|.+.|.++....+|.+|++|+.|.+|++|.++++.   .++.
T Consensus       327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a  405 (775)
T KOG0319|consen  327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA  405 (775)
T ss_pred             eeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence            999975 57789999999999999999887776 889999999999966677899999999999999885422   3455


Q ss_pred             EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE------------EEeeCCeeEEEEecCCCEEEEEEcCC
Q 003842          592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT------------RVFKGGTAQMRFQPHLGRYLAAAAEN  659 (792)
Q Consensus       592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~------------~~~~~~~~~v~~sp~~~~lla~s~dg  659 (792)
                      ...+|...|.+++++..+..+|++++.|++|++|++...+..            +.+...+++++++|+++.+++|+.|.
T Consensus       406 ~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDk  485 (775)
T KOG0319|consen  406 QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDK  485 (775)
T ss_pred             hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccc
Confidence            677999999999999999999999999999999999873211            12345789999999999999999999


Q ss_pred             eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003842          660 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL  738 (792)
Q Consensus       660 ~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L  738 (792)
                      +.+||+++......++.+|...|+||.|++....+++++.| +|+||.+.++   .|+.++.+|...|..+.|-.+++.|
T Consensus       486 taKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~~aVlra~F~~~~~ql  562 (775)
T KOG0319|consen  486 TAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHTSAVLRASFIRNGKQL  562 (775)
T ss_pred             ceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCccceeEeeeeeeCCcEE
Confidence            99999999999999999999999999999999999999999 9999999776   8999999999999999999999999


Q ss_pred             EEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          739 LVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       739 ~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ++++.||-|++|+++++++. ++..|++.|++++.++...+++||+.||.|.+|+
T Consensus       563 iS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  563 ISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             EeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            99999999999999999998 8999999999999999999999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-32  Score=273.30  Aligned_cols=245  Identities=20%  Similarity=0.335  Sum_probs=215.2

Q ss_pred             eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      ..++.++||...|..++.++||++.++++.|+++++||+.+++....|.+|...|.+++|++|.+.|++|+.|.+|++|+
T Consensus        54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn  133 (315)
T KOG0279|consen   54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN  133 (315)
T ss_pred             ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeEEecc--cCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEE
Q 003842          583 ADNPGYSLRTFMG--HSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA  656 (792)
Q Consensus       583 l~s~~~~i~~~~~--h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s  656 (792)
                      +-.  .+..++..  +.+.|.|++|+|+. +-+|++++.|++|++||+++.+....|.+   .++.+.++|||..+++|+
T Consensus       134 t~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg  211 (315)
T KOG0279|consen  134 TLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG  211 (315)
T ss_pred             ecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC
Confidence            975  34444433  37899999999985 56788999999999999999888877754   467799999999999999


Q ss_pred             cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEee---------cCCCceE
Q 003842          657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELS---------CNGNKFH  727 (792)
Q Consensus       657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~---------~~~~~i~  727 (792)
                      .||.+.+||++.++.++.+. |...|.+++|+|+...|+.+....|+|||+.+..   ++.++.         .......
T Consensus       212 kdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~---~v~~l~~d~~g~s~~~~~~~cl  287 (315)
T KOG0279|consen  212 KDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKA---VVEELKLDGIGPSSKAGDPICL  287 (315)
T ss_pred             CCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchh---hhhhccccccccccccCCcEEE
Confidence            99999999999999988776 7889999999999888888777799999998873   332222         1234467


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECC
Q 003842          728 SCVFHPTYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       728 si~fspdg~~L~sgs~dg~I~IwDl~  753 (792)
                      +++|++||..|++|..|+.|++|.+.
T Consensus       288 slaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  288 SLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEEEcCCCcEEEeeecCCcEEEEEee
Confidence            88999999999999999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.1e-32  Score=306.65  Aligned_cols=274  Identities=24%  Similarity=0.415  Sum_probs=239.6

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------------------ceeEEecc
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-------------------------------KSKTNLEE  552 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~-------------------------------~~~~~l~~  552 (792)
                      ++.++......|+|+.|++|+.+||.|..|..|++|.+...                               ...+++.+
T Consensus       370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G  449 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG  449 (707)
T ss_pred             EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence            44455556677999999999999999999999999987621                               12345678


Q ss_pred             CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 003842          553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC  632 (792)
Q Consensus       553 h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~  632 (792)
                      |.++|..+.|+|+.++|++++.|++||+|.+++ ..++..+.+|..+|+++.|+|.| ++|+|++.|++-++|.......
T Consensus       450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P  527 (707)
T KOG0263|consen  450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP  527 (707)
T ss_pred             CCCceeeeeecccccceeeccCCcceeeeeccc-ceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc
Confidence            999999999999999999999999999999998 77888899999999999999985 6888999999999999999888


Q ss_pred             EEEeeC---CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 003842          633 TRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG  708 (792)
Q Consensus       633 ~~~~~~---~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~  708 (792)
                      .+.|.+   .+.|+.|+|+..++++|+.|.+|++||+.++..++.|.+|.++|.+++|+|+|++|++|++| .|+|||+.
T Consensus       528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~  607 (707)
T KOG0263|consen  528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA  607 (707)
T ss_pred             hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence            888865   46789999999999999999999999999999999999999999999999999999999999 99999998


Q ss_pred             CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-------------------------EEccc
Q 003842          709 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-------------------------TLTAH  763 (792)
Q Consensus       709 s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-------------------------~~~~h  763 (792)
                      ++   ..+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+......                         .+...
T Consensus       608 ~~---~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK  684 (707)
T KOG0263|consen  608 NG---SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTK  684 (707)
T ss_pred             CC---cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeec
Confidence            87   777888889999999999999999999999999999998642211                         33334


Q ss_pred             CCCeEEEEEeCCCCEEEEE
Q 003842          764 EGLIAALAVSTETGYVASA  782 (792)
Q Consensus       764 ~~~V~sl~fspdg~~LaSg  782 (792)
                      ..+|.++.|...+-.|++|
T Consensus       685 ~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  685 NTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             CceEEEEEEeccceeEEec
Confidence            5578888887766445544

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=8.1e-32  Score=275.82  Aligned_cols=282  Identities=19%  Similarity=0.264  Sum_probs=248.6

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      ....+.+|++.|+|+.|+.||.+||||+.+|.|+||+..++.....+......|.-+.|+|.+..|++|+.||.|.+|.+
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i  177 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI  177 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence            34567899999999999999999999999999999999999999998877888999999999999999999999999999


Q ss_pred             CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEcCC
Q 003842          584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAEN  659 (792)
Q Consensus       584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~dg  659 (792)
                      .+ ....+.+.+|..++++-.|.|+|++++ ++..||+|++||+.++..+..+.    ....++.++..+..++.+..++
T Consensus       178 p~-~~~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~  255 (399)
T KOG0296|consen  178 PS-QALCKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEG  255 (399)
T ss_pred             CC-cceeeEecCCCCCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCc
Confidence            98 477889999999999999999988655 99999999999999999888776    2456788888888999999999


Q ss_pred             eEEEEECCCCeEEEEec--------CCCCCeEEEEEcC---CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceE
Q 003842          660 VVSILDAETQACRLSLQ--------GHTKPIDSVCWDP---SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH  727 (792)
Q Consensus       660 ~I~i~D~~t~~~~~~l~--------~h~~~V~sv~~sp---dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~  727 (792)
                      .+++....+++.+....        .++..+.||.+.|   .=.+.|+|+-| +|.|||+...    .++..-.|...|.
T Consensus       256 ~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he~~V~  331 (399)
T KOG0296|consen  256 VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----TLRHICEHEDGVT  331 (399)
T ss_pred             cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----hhheeccCCCceE
Confidence            99999999999888776        3444555555554   55688899988 9999999764    3344445777899


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          728 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       728 si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .+.|-+ ..+|++++.+|.|++||.++|.++ .+.+|...|.+++++|+.++|+|+|.|++.+||+
T Consensus       332 ~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  332 KLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             EEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            999999 789999999999999999999988 7889999999999999999999999999999985

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.7e-32  Score=300.19  Aligned_cols=353  Identities=19%  Similarity=0.295  Sum_probs=282.1

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCC---CCCCCCCCCcceeccCCccee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD---DTDPRDAGGRGMDVSQGFSFK  503 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d---~~~~~d~~~~~~d~~~~~~~~  503 (792)
                      ...++.+||+.++++....   ++|++.++++++.+...   ++.......|-...   .+++.|+..++||+..++   
T Consensus        65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~---He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~---  138 (775)
T KOG0319|consen   65 ITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAI---HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY---  138 (775)
T ss_pred             hheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhc---cCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE---
Confidence            3457788899998886665   88999999887766532   21222222221111   156678888999998875   


Q ss_pred             eeeeeecCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCc-eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003842          504 EANSVRASTSKVICCHFSSDGK--LLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV  580 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~--~Lasgs~Dg~I~vWdl~t~~-~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I  580 (792)
                      ....|+||.+.|.++.|.|+-+  .|++|..|+.|++||+.+.. ++.++..|...|++++|++|+..+++++.|..|.|
T Consensus       139 ~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~v  218 (775)
T KOG0319|consen  139 CTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIV  218 (775)
T ss_pred             EEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEE
Confidence            7889999999999999999765  58999999999999998554 48888899999999999999999999999999999


Q ss_pred             EeCCCCC-----------------------c--e----------------------------------------------
Q 003842          581 WDADNPG-----------------------Y--S----------------------------------------------  589 (792)
Q Consensus       581 Wdl~s~~-----------------------~--~----------------------------------------------  589 (792)
                      ||+..-.                       +  .                                              
T Consensus       219 wd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~  298 (775)
T KOG0319|consen  219 WDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLL  298 (775)
T ss_pred             eehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEE
Confidence            9884100                       0  0                                              


Q ss_pred             -----------------------------------------------------------eEEecccCCCeEEEEEcCCCC
Q 003842          590 -----------------------------------------------------------LRTFMGHSASVMSLDFHPNKD  610 (792)
Q Consensus       590 -----------------------------------------------------------i~~~~~h~~~V~sl~fspd~~  610 (792)
                                                                                 ...+.+|...|.+++...+| 
T Consensus       299 vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-  377 (775)
T KOG0319|consen  299 VTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-  377 (775)
T ss_pred             EEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-
Confidence                                                                       11223677777777744444 


Q ss_pred             eEEEEEeCCCcEEEEEcCCCeeE----EE---eeCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCCe-----EE----E
Q 003842          611 DLICSCDGDGEIRYWSINNGSCT----RV---FKGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQA-----CR----L  673 (792)
Q Consensus       611 ~ll~sgs~Dg~I~iwdl~~~~~~----~~---~~~~~~~v~~sp~~~-~lla~s~dg~I~i~D~~t~~-----~~----~  673 (792)
                      .+|++|+.|.++++|.++++...    ..   +...+.+++++..+. .|++++.|.+|++|++...+     .+    .
T Consensus       378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~  457 (775)
T KOG0319|consen  378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY  457 (775)
T ss_pred             cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence            58889999999999988544322    22   234566677766554 56778889999999997622     11    2


Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003842          674 SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM  752 (792)
Q Consensus       674 ~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl  752 (792)
                      +...|...|+|++++|+.++|++|+.| +.+||++...   .....+.+|...++++.|++....+++++.|++|+||.+
T Consensus       458 t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~---~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i  534 (775)
T KOG0319|consen  458 TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL---RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSI  534 (775)
T ss_pred             HHHhhcccccceEecCCCceEEecccccceeeecccCc---eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEe
Confidence            345699999999999999999999999 9999999744   888999999999999999999999999999999999999


Q ss_pred             CCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          753 SENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       753 ~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .+..++ ++.+|+..|..+.|-.+++.|++|+.||.|+||+
T Consensus       535 s~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn  575 (775)
T KOG0319|consen  535 STFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN  575 (775)
T ss_pred             ccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence            999998 8889999999999999999999999999999996

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.5e-31  Score=290.48  Aligned_cols=358  Identities=19%  Similarity=0.310  Sum_probs=295.9

Q ss_pred             CcceEEEEeCCCeeeecCCC--eeEeCCCcchhhcccccc----cCCCCCCceeeeccCCC----CCCCCCCCcceeccC
Q 003842          429 SKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLV----EDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQ  498 (792)
Q Consensus       429 ~k~~l~~s~Dg~~~~ss~s~--~lWD~~tg~~~~~~~~~~----~~g~~d~~v~~~l~~d~----~~~~d~~~~~~d~~~  498 (792)
                      ....+.|||||+..+.+..+  .||-....... .+..|.    -.|..++.+..-++.|.    .+.+|...+++.+..
T Consensus        98 ~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~-~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~  176 (893)
T KOG0291|consen   98 GVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKN-EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDG  176 (893)
T ss_pred             ccceEEECCCCcEEEEEecceeEEEecCcchhc-ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecc
Confidence            35579999999998887777  78976543321 222222    24556665555455554    456788888888776


Q ss_pred             CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------------------Cce---------
Q 003842          499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-----------------------LKS---------  546 (792)
Q Consensus       499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t-----------------------~~~---------  546 (792)
                      ... -....+.+|.+.|.++-|..+...|++.+.||.|.+|....                       ++.         
T Consensus       177 ~k~-~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k  255 (893)
T KOG0291|consen  177 NKN-LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYK  255 (893)
T ss_pred             ccc-cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEE
Confidence            554 34567889999999999999999999999999999997650                       111         


Q ss_pred             --eEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEE
Q 003842          547 --KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY  624 (792)
Q Consensus       547 --~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~i  624 (792)
                        +..+......|++.+|++..+.||+|-..|...+|++.. -..+..+.-....|..++|+..|+.+.+.|+.-|.+.|
T Consensus       256 ~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~-f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlV  334 (893)
T KOG0291|consen  256 TKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD-FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLV  334 (893)
T ss_pred             EEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC-ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEE
Confidence              011122347899999999999999999999999999986 66777777777899999999999988877888899999


Q ss_pred             EEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-
Q 003842          625 WSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-  700 (792)
Q Consensus       625 wdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-  700 (792)
                      |++.+...+....   ..+.+++++||+..+++|+.||.|+|||...+-|..+|..|+..|+.++|+..|+.|++.+-| 
T Consensus       335 weWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDG  414 (893)
T KOG0291|consen  335 WEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDG  414 (893)
T ss_pred             EEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCC
Confidence            9999887766554   457889999999999999999999999999999999999999999999999999999999999 


Q ss_pred             eEEEEECCCCCCcceEEEeecCC-CceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC
Q 003842          701 SVRVWTVGSGSEGECVHELSCNG-NKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTAHEGLIAALAVSTETG  777 (792)
Q Consensus       701 ~I~IwDl~s~~~~~~i~~~~~~~-~~i~si~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~  777 (792)
                      +|+.||+...   +..+++.... ..+.+++..|.|..+++|+.|. .|+||++.+|+++ .+.+|+++|.+++|+|++.
T Consensus       415 tVRAwDlkRY---rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~  491 (893)
T KOG0291|consen  415 TVRAWDLKRY---RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS  491 (893)
T ss_pred             eEEeeeeccc---ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC
Confidence            9999999766   6667766543 3478889999999999999887 8999999999999 7889999999999999999


Q ss_pred             EEEEEeCCCcEEEeC
Q 003842          778 YVASASHDKFVKLWK  792 (792)
Q Consensus       778 ~LaSgs~DG~I~IWd  792 (792)
                      .||++++|.+||+||
T Consensus       492 ~LaS~SWDkTVRiW~  506 (893)
T KOG0291|consen  492 LLASGSWDKTVRIWD  506 (893)
T ss_pred             eEEeccccceEEEEE
Confidence            999999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3.1e-31  Score=322.54  Aligned_cols=282  Identities=18%  Similarity=0.305  Sum_probs=238.4

Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----c----eeEEeccCCCCEEEEEECC-CCCeEEEEeCCCcE
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----K----SKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTV  578 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~----~----~~~~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V  578 (792)
                      +..|.+.|++++|+++|++||+|+.|+.|+|||+...    .    ....+. +...|.+++|++ ++.+|++++.||+|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            4569999999999999999999999999999997542    1    122233 356799999987 47799999999999


Q ss_pred             EEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--CeeEEEEe-cCCCEEEEE
Q 003842          579 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQ-PHLGRYLAA  655 (792)
Q Consensus       579 ~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~s-p~~~~lla~  655 (792)
                      +|||+.+ +..+..+.+|...|++++|+|.+..+|++|+.||+|++||++++.++..+..  .+.++.|. +++..++++
T Consensus       558 ~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg  636 (793)
T PLN00181        558 QVWDVAR-SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG  636 (793)
T ss_pred             EEEECCC-CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence            9999987 6778888999999999999986566788999999999999999988877654  45667775 467888999


Q ss_pred             EcCCeEEEEECCCCe-EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC---CcceEEEeecCCCceEEEE
Q 003842          656 AAENVVSILDAETQA-CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS---EGECVHELSCNGNKFHSCV  730 (792)
Q Consensus       656 s~dg~I~i~D~~t~~-~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~---~~~~i~~~~~~~~~i~si~  730 (792)
                      +.|+.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.| .|+|||++...   ...++..+.+|...+..++
T Consensus       637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~  715 (793)
T PLN00181        637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG  715 (793)
T ss_pred             eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence            999999999998875 567788999999999997 78889999988 99999997532   2356788889999999999


Q ss_pred             EeCCCCEEEEEEcCCeEEEEECCCCcEE--------------EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          731 FHPTYPSLLVIGCYQSLELWNMSENKTM--------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       731 fspdg~~L~sgs~dg~I~IwDl~~~~~~--------------~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |++++.+|++|+.|+.|++|+......+              ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus       716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE  791 (793)
T ss_pred             EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence            9999999999999999999998655322              1123556799999999999999999999999996

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-31  Score=293.54  Aligned_cols=347  Identities=18%  Similarity=0.278  Sum_probs=276.6

Q ss_pred             EeCCCeeeecCCC--eeEeCCCcchhhcccccccCCCCCCceeeeccCCCC-----CCCCCCCcceeccCCcceeeeeee
Q 003842          436 GTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDT-----DPRDAGGRGMDVSQGFSFKEANSV  508 (792)
Q Consensus       436 s~Dg~~~~ss~s~--~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~-----~~~d~~~~~~d~~~~~~~~~~~~l  508 (792)
                      +..|.+++.+...  .+||+++|+....+......    ..+.+....++.     ++.|+.+++|+...+   ....++
T Consensus        31 ~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k----~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~---~~~~tf  103 (888)
T KOG0306|consen   31 SGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKK----AEVTCLRSSDDILLLAVGYADGSVQIFSLESE---EILITF  103 (888)
T ss_pred             cCCCcEEEEeccccEeEEeeecchhhhhhhhhccc----ceEEEeeccCCcceEEEEecCceEEeeccCCC---ceeeee
Confidence            3347777663333  77999999776655532221    234444554443     468888999988765   577889


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc
Q 003842          509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY  588 (792)
Q Consensus       509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~  588 (792)
                      .+|...|+++.|+..|.+||+|+.|+.|.|||+-...-...+.+|.+.|+..-|..+.++|++.|.|+.|++||+++...
T Consensus       104 ngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC  183 (888)
T KOG0306|consen  104 NGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHC  183 (888)
T ss_pred             cccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccccee
Confidence            99999999999999999999999999999999988777888888888888877777677777777777777777752100


Q ss_pred             ---------------------------------------------------------------e----------------
Q 003842          589 ---------------------------------------------------------------S----------------  589 (792)
Q Consensus       589 ---------------------------------------------------------------~----------------  589 (792)
                                                                                     .                
T Consensus       184 f~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g  263 (888)
T KOG0306|consen  184 FETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQG  263 (888)
T ss_pred             eeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEec
Confidence                                                                           0                


Q ss_pred             --------------------------------------------------------------------------------
Q 003842          590 --------------------------------------------------------------------------------  589 (792)
Q Consensus       590 --------------------------------------------------------------------------------  589 (792)
                                                                                                      
T Consensus       264 ~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~n  343 (888)
T KOG0306|consen  264 ADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLAN  343 (888)
T ss_pred             chhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeec
Confidence                                                                                            


Q ss_pred             ----------------------eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC-eeEEEEe
Q 003842          590 ----------------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-TAQMRFQ  646 (792)
Q Consensus       590 ----------------------i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-~~~v~~s  646 (792)
                                            ...+.+|...|.+++|+.+. .++ ..+..+.|++|+..+.+|++++... +.+..|.
T Consensus       344 Ntv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~-~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fv  421 (888)
T KOG0306|consen  344 NTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-ILL-ASGAGESIKIWNRDTLKCIRTITCGYILASKFV  421 (888)
T ss_pred             CceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc-eee-eecCCCcEEEEEccCcceeEEeccccEEEEEec
Confidence                                  01122566778888887663 344 3445789999999999999998764 5678899


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC-----cceEE---
Q 003842          647 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-----GECVH---  717 (792)
Q Consensus       647 p~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~-----~~~i~---  717 (792)
                      |.+.++++|...|.+.+||+.....+.++.+|++.|++++.+||++.+++++.| +|++||+.-...     .+.+.   
T Consensus       422 pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~  501 (888)
T KOG0306|consen  422 PGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH  501 (888)
T ss_pred             CCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeecc
Confidence            999999999999999999999999999999999999999999999999999999 999999843211     11111   


Q ss_pred             -EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          718 -ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       718 -~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                       ..-.-...|.++.++||+++|+++--|.+|+||-+++.+.. .+.+|.-+|.||.++||+++|+|||.|.+|+||
T Consensus       502 ~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW  577 (888)
T KOG0306|consen  502 TRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW  577 (888)
T ss_pred             ceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence             11123467999999999999999999999999999998876 899999999999999999999999999999999

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.8e-32  Score=301.65  Aligned_cols=264  Identities=28%  Similarity=0.460  Sum_probs=222.3

Q ss_pred             cceEEEEeCCCeeeec---CCCeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss---~s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ..+.-|++|+..++.+   +.+++|.+...+++..-+            ..++..-++...|......|...   -...+
T Consensus       381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~------------~~~l~~~d~~sad~~~~~~D~~~---~~~~~  445 (707)
T KOG0263|consen  381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKD------------ASDLSNIDTESADVDVDMLDDDS---SGTSR  445 (707)
T ss_pred             ceeEeecCCcchhhccccccEEEEEecchhhhccccc------------hhhhccccccccchhhhhccccC---CceeE
Confidence            3456778888866554   334889887544322111            11222222333333333333322   23556


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      ++.||.++|+.+.|+|+.++|++++.|++|++|.+.+..++..+++|..+|+++.|+|.|-||||++.|++.++|..+. 
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-  524 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-  524 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeEEE
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSI  663 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I~i  663 (792)
                      ..+++.+.+|-+.|.|+.|||+.. ++++|+.|.+||+||+.+|..++.|.+   .+.+++|+|+|.+|++|+.|+.|.+
T Consensus       525 ~~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i  603 (707)
T KOG0263|consen  525 NKPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKI  603 (707)
T ss_pred             CCchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEE
Confidence            789999999999999999999965 677999999999999999999999976   5678999999999999999999999


Q ss_pred             EECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003842          664 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG  710 (792)
Q Consensus       664 ~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~  710 (792)
                      ||+.+++.+..+.+|++.|.+|.|+.+|.+||+++.| .|++||+...
T Consensus       604 WDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  604 WDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            9999999999999999999999999999999999999 9999998653

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.7e-32  Score=283.98  Aligned_cols=275  Identities=25%  Similarity=0.449  Sum_probs=232.4

Q ss_pred             CcceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003842          429 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA  505 (792)
Q Consensus       429 ~k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~  505 (792)
                      ....+.|.|+|+.+++++.-   .||+..                                              .|..-
T Consensus        98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~----------------------------------------------~fnFE  131 (464)
T KOG0284|consen   98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGT----------------------------------------------SFNFE  131 (464)
T ss_pred             ceeeEEEcCCCceeEeecccccEEEecCc----------------------------------------------eeeHH
Confidence            46789999999998885433   666542                                              22333


Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      ..+.+|...|+++.|+++|.++++|+.+|.|++|+..-.........|...|++++|+|+...|++++.||+|+|||...
T Consensus       132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~  211 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM  211 (464)
T ss_pred             HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence            45679999999999999999999999999999999764443333344559999999999999999999999999999987


Q ss_pred             CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---eCCeeEEEEecCCCEEEEEEcCCeEE
Q 003842          586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVS  662 (792)
Q Consensus       586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~lla~s~dg~I~  662 (792)
                       .+..+.+.+|.-.|.+++|+|.. .+|+++++|..|++||.+++.|+.++   +..+..+.|.+++++|++++.|..++
T Consensus       212 -~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~k  289 (464)
T KOG0284|consen  212 -PKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCK  289 (464)
T ss_pred             -CchhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEE
Confidence             55667779999999999999985 58889999999999999999998765   45567789999999999999999999


Q ss_pred             EEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003842          663 ILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV  740 (792)
Q Consensus       663 i~D~~t~~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s  740 (792)
                      +||+++.+.++++.+|+..|+++.|+| ...+|++|+.| .|..|.+...+  .....-..|...|++++|+|-|..|++
T Consensus       290 v~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~t  367 (464)
T KOG0284|consen  290 VFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILAT  367 (464)
T ss_pred             EEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeEee
Confidence            999999999999999999999999999 45578888888 99999987332  222233468889999999999999999


Q ss_pred             EEcCCeEEEEECC
Q 003842          741 IGCYQSLELWNMS  753 (792)
Q Consensus       741 gs~dg~I~IwDl~  753 (792)
                      |+.|.++++|.-.
T Consensus       368 gsnd~t~rfw~r~  380 (464)
T KOG0284|consen  368 GSNDRTVRFWTRN  380 (464)
T ss_pred             cCCCcceeeeccC
Confidence            9999999999653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.98  E-value=3.1e-32  Score=276.06  Aligned_cols=269  Identities=22%  Similarity=0.462  Sum_probs=232.2

Q ss_pred             eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      +..-......|+|+.+..+  .+++|..|++|+|||..+..+++.+.+|++.|.|+.|.  .+.|++|+.|.+|+|||++
T Consensus       190 inc~Se~skgVYClQYDD~--kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~  265 (499)
T KOG0281|consen  190 INCRSENSKGVYCLQYDDE--KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN  265 (499)
T ss_pred             ecCCcccCCceEEEEecch--hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc
Confidence            3333456678999998654  89999999999999999999999999999999999995  5599999999999999999


Q ss_pred             CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE---EEeeC---CeeEEEEecCCCEEEEEEcC
Q 003842          585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVFKG---GTAQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~---~~~~~---~~~~v~~sp~~~~lla~s~d  658 (792)
                      + ++++.++.+|...|..+.|+   +.++++|+.|.+|.+||+.....+   +.+.+   .++.+.|+  .+++++++.|
T Consensus       266 t-ge~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgD  339 (499)
T KOG0281|consen  266 T-GEPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGD  339 (499)
T ss_pred             C-CchhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCC
Confidence            8 88999999999999999998   347889999999999999875422   23333   34445554  4589999999


Q ss_pred             CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003842          659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~  737 (792)
                      .+|++|++.+++++.++.+|...|-|+.+  .|+++++|+.| +|++||+..|   .+++.+.+|+.-|.++.|  |.+.
T Consensus       340 RTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRF--d~kr  412 (499)
T KOG0281|consen  340 RTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKR  412 (499)
T ss_pred             ceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheee--cCce
Confidence            99999999999999999999999988875  58999999999 9999999887   899999999999999999  5567


Q ss_pred             EEEEEcCCeEEEEECCCCcE----------EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          738 LLVIGCYQSLELWNMSENKT----------MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       738 L~sgs~dg~I~IwDl~~~~~----------~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |++|+.||+|+|||+..+.-          ..+..|.+.|..+.|  |...|++++.|.+|.|||
T Consensus       413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd  475 (499)
T KOG0281|consen  413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD  475 (499)
T ss_pred             eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence            99999999999999976531          156679999999999  456799999999999997

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.1e-30  Score=253.23  Aligned_cols=280  Identities=19%  Similarity=0.331  Sum_probs=240.7

Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      -+....+..|.++|.++.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+|
T Consensus         7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw   86 (307)
T KOG0316|consen    7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW   86 (307)
T ss_pred             chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence            34667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eEEEee---CCeeEEEEecCCCEEEEEE
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFK---GGTAQMRFQPHLGRYLAAA  656 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~~---~~~~~v~~sp~~~~lla~s  656 (792)
                      |+++ ++.++.|.+|.+.|+.+.|+.+. .++++|+.|..+++||.++..  .+.++.   ..+.++.+  .+..|++|+
T Consensus        87 DV~T-Gkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS  162 (307)
T KOG0316|consen   87 DVNT-GKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGS  162 (307)
T ss_pred             Eccc-CeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeec
Confidence            9998 88999999999999999999875 577899999999999998754  444443   34444444  456899999


Q ss_pred             cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc--eEEEEEeC
Q 003842          657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHP  733 (792)
Q Consensus       657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~--i~si~fsp  733 (792)
                      .||+++.||++.+.....+.+  .+|+|++|++|++.++.++.| +|++.|-.++   +.+..+++|.+.  -..|++..
T Consensus       163 ~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~q  237 (307)
T KOG0316|consen  163 VDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQ  237 (307)
T ss_pred             cCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeecc
Confidence            999999999999987766655  579999999999999999988 9999999888   677777777655  34567888


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCC-eEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          734 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL-IAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       734 dg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~-V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ...+++.|+.||.|++||+.+...+ .+..+... |.+++++|....|+++. ++.+.+|
T Consensus       238 sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~  296 (307)
T KOG0316|consen  238 SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFW  296 (307)
T ss_pred             cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceece
Confidence            8889999999999999999998887 55566665 78999999887777775 4445555

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=7.5e-31  Score=288.59  Aligned_cols=279  Identities=23%  Similarity=0.401  Sum_probs=254.4

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      ..+.||...|.+++||.|...+++|+ .+.|+||+.++.++++++...  .+.+..|.|.++++++|...|.+.|||+.+
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS  443 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS  443 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence            34679999999999999998888775 568999999999999999754  899999999999999999999999999998


Q ss_pred             CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC--------e-------eEEEeeCCeeEEEEecCCC
Q 003842          586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--------S-------CTRVFKGGTAQMRFQPHLG  650 (792)
Q Consensus       586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~--------~-------~~~~~~~~~~~v~~sp~~~  650 (792)
                       ...+.++..|.+.|++|+..||+..++ +|+.|.+|++||..--        +       .+-.+...+.++.++|++.
T Consensus       444 -~~l~Eti~AHdgaIWsi~~~pD~~g~v-T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk  521 (888)
T KOG0306|consen  444 -ASLVETIRAHDGAIWSISLSPDNKGFV-TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK  521 (888)
T ss_pred             -hhhhhhhhccccceeeeeecCCCCceE-EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence             677788889999999999999987655 9999999999997521        1       1122456788999999999


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEE
Q 003842          651 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC  729 (792)
Q Consensus       651 ~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si  729 (792)
                      +++++--|++|+||-+++.+....+.+|.-+|.|+.++||++++++|+.| +|+||-+.-|   .|-+.+..|...|.++
T Consensus       522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V  598 (888)
T KOG0306|consen  522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV  598 (888)
T ss_pred             EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence            99999999999999999999999999999999999999999999999999 9999999777   7888889999999999


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          730 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .|.|....+++++.|+.|+-||-...+.+ .+.+|...|+|++.+|+|.+++++++|.+|++|.
T Consensus       599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence            99999999999999999999999988877 8899999999999999999999999999999995

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=9.5e-31  Score=282.44  Aligned_cols=280  Identities=21%  Similarity=0.393  Sum_probs=254.5

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      +.+..|+..|.|+.|+|...+++++-.+|.|.|||.++...++.+.-...+|++..|....+++++|+.|..|+||+.++
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt   86 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT   86 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeEEEeeCC---eeEEEEecCC-CEEEEEEcCCe
Q 003842          586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGG---TAQMRFQPHL-GRYLAAAAENV  660 (792)
Q Consensus       586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~~~---~~~v~~sp~~-~~lla~s~dg~  660 (792)
                       ...+..|..|.+.|.+|+.||...+++ ++++|-+|++||.+.. .|..+|+++   +.+++|.|.+ +.+++++-|++
T Consensus        87 -~ekV~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT  164 (794)
T KOG0276|consen   87 -GEKVKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT  164 (794)
T ss_pred             -ceeeEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence             788999999999999999999987655 9999999999999865 567778776   5678999976 46777888999


Q ss_pred             EEEEECCCCeEEEEecCCCCCeEEEEEcCCC--CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003842          661 VSILDAETQACRLSLQGHTKPIDSVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg--~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~  737 (792)
                      |+||.+....+.+++.+|...|+||+|-+.|  .||++|++| .|+|||..+.   .|+.++.+|...|..++|+|.-..
T Consensus       165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lpi  241 (794)
T KOG0276|consen  165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELPI  241 (794)
T ss_pred             EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCcE
Confidence            9999999999999999999999999998855  499999999 9999999776   899999999999999999999999


Q ss_pred             EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003842          738 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL  790 (792)
Q Consensus       738 L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I  790 (792)
                      |++|+.||+|+||+..+.+.. ++.-.-+.|+|++-.+.++.++.|.++|.|.|
T Consensus       242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            999999999999999988766 55556778999999998888999988888754

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=9.7e-31  Score=267.72  Aligned_cols=242  Identities=28%  Similarity=0.528  Sum_probs=222.6

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t-~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      ..++||++.|.+|+|+..|++||+++.|-.+.+||.++ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|+++
T Consensus       144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~  223 (406)
T KOG0295|consen  144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD  223 (406)
T ss_pred             hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence            35789999999999999999999999999999999987 68888899999999999999999999999999999999999


Q ss_pred             CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE---EEeeCCeeEEEEecCC------------
Q 003842          585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVFKGGTAQMRFQPHL------------  649 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~---~~~~~~~~~v~~sp~~------------  649 (792)
                      + +.++.++.+|...|..+..+.|| .++++|+.|.+|++|-+.++.|.   +.++..+.+++|.|..            
T Consensus       224 t-g~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~  301 (406)
T KOG0295|consen  224 T-GYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST  301 (406)
T ss_pred             c-ceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence            8 89999999999999999999986 58899999999999999999554   4455567777776542            


Q ss_pred             ---CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc
Q 003842          650 ---GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK  725 (792)
Q Consensus       650 ---~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~  725 (792)
                         ..+++++.|++|++||+.++.++.++.+|..+|..++|+|.|+||+++.+| ++++||+++.   .|.+.+..|..-
T Consensus       302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~hf  378 (406)
T KOG0295|consen  302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEHF  378 (406)
T ss_pred             CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCcce
Confidence               367788889999999999999999999999999999999999999999999 9999999876   899999999999


Q ss_pred             eEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003842          726 FHSCVFHPTYPSLLVIGCYQSLELWNM  752 (792)
Q Consensus       726 i~si~fspdg~~L~sgs~dg~I~IwDl  752 (792)
                      ++++.|+.+..++++|+-|..+++|..
T Consensus       379 vt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  379 VTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eEEEecCCCCceEEeccccceeeeeec
Confidence            999999999999999999999999974

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=5.4e-30  Score=252.02  Aligned_cols=280  Identities=19%  Similarity=0.290  Sum_probs=247.2

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE--eccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEe
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~--l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWd  582 (792)
                      +.+++|...|.+++|+.+|..|++|+.|+++.||+++..+....  ..+|.+.|-.++|+| ....|++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            56789999999999999999999999999999999998765544  458999999999998 456899999999999999


Q ss_pred             CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE--eeCCeeEEEEecCCCEEEEEEcCCe
Q 003842          583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAAENV  660 (792)
Q Consensus       583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~lla~s~dg~  660 (792)
                      ++. ++++.......+.| -+.|+|+|.+ ++.++.|..|.+.|.++.+....  ++..+..++|+.+++.++.....|.
T Consensus        94 ~r~-~k~~~~i~~~~eni-~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen   94 IRS-GKCTARIETKGENI-NITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC  170 (313)
T ss_pred             ecc-CcEEEEeeccCcce-EEEEcCCCCE-EEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence            998 56665555444444 5789999875 55889999999999999887765  4556778899988888888888899


Q ss_pred             EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003842          661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL  739 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~  739 (792)
                      |.|......+++..+.+|.....||.|+|+|+|||+|+.| .+.+||+..   ..|++.+.-++-+|+.+.|+.||++|+
T Consensus       171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E---LiC~R~isRldwpVRTlSFS~dg~~lA  247 (313)
T KOG1407|consen  171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE---LICERCISRLDWPVRTLSFSHDGRMLA  247 (313)
T ss_pred             EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH---hhhheeeccccCceEEEEeccCcceee
Confidence            9999999999999999999999999999999999999999 999999954   488889999999999999999999999


Q ss_pred             EEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC---------CcEEEe
Q 003842          740 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD---------KFVKLW  791 (792)
Q Consensus       740 sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~D---------G~I~IW  791 (792)
                      +++.|..|-|=++++|..+....++++...++|+|...+||.+++|         |.|+||
T Consensus       248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF  308 (313)
T KOG1407|consen  248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF  308 (313)
T ss_pred             ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence            9999999999999999999888999999999999999999988765         567765

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=2.5e-31  Score=267.06  Aligned_cols=277  Identities=25%  Similarity=0.438  Sum_probs=244.6

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--------cCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--------EHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~--------~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      +..+.+.|..|||||.||++|+.||.|.|||..+|+..+.++        -+...|.|+.|+.|...|++|+.||.|+||
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            456678999999999999999999999999999998877654        378899999999999999999999999999


Q ss_pred             eCCCCCceeEEec-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEc
Q 003842          582 DADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       582 dl~s~~~~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~  657 (792)
                      .+.+ +.+++.|. .|...|+|+.|+.|+..++ +++.|.++++.-+++|++++.|.++   ++...|.++|.++++++.
T Consensus       291 ri~t-G~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs  368 (508)
T KOG0275|consen  291 RIET-GQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS  368 (508)
T ss_pred             EEec-chHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence            9998 77777776 8999999999999988766 9999999999999999999999876   456789999999999999


Q ss_pred             CCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCCCCcceEEEeec---CCCceEEEE
Q 003842          658 ENVVSILDAETQACRLSLQG--HTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSC---NGNKFHSCV  730 (792)
Q Consensus       658 dg~I~i~D~~t~~~~~~l~~--h~~~V~sv~~spd-g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~---~~~~i~si~  730 (792)
                      ||+|++|+.++.+|+.+|+.  ...+|.++-.-|. ...+++|... +|+|.++..    ..++.+..   .++.+.+++
T Consensus       369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~  444 (508)
T KOG0275|consen  369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAI  444 (508)
T ss_pred             CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEE
Confidence            99999999999999988875  4557888887774 4577777766 999999853    45555543   456688999


Q ss_pred             EeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          731 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       731 fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ++|.|.++++.+.|+.++.|.+.+|++. ++..|+..|..++-+|..+.||+-++||.+++|+
T Consensus       445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            9999999999999999999999999877 7889999999999999999999999999999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=6.5e-31  Score=256.61  Aligned_cols=279  Identities=22%  Similarity=0.313  Sum_probs=246.5

Q ss_pred             eeeecCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          506 NSVRASTSKVICCHFSS---DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       506 ~~l~~H~~~V~~lafsp---dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      .+..+|+.+|..++|||   +|-+|++++.|+.-.+-+-++|.-+.++.+|.+.|+...++.+....++++.|-+.+|||
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~   87 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD   87 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence            35679999999999986   899999999999999999999999999999999999999999998999999999999999


Q ss_pred             CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----EEEeeCCeeEEEEecCCCEEEEEEcC
Q 003842          583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~~~~~~v~~sp~~~~lla~s~d  658 (792)
                      .-+ +..+..|. |+..|.+++|+.|.++|+ +|+.+..+||||++..+.    +.-..+.+..+.|......|++.+.|
T Consensus        88 a~t-gdelhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd  164 (334)
T KOG0278|consen   88 AVT-GDELHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD  164 (334)
T ss_pred             hhh-hhhhhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence            998 55566664 888999999999977655 999999999999987543    23345677888899999999999999


Q ss_pred             CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003842          659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL  738 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L  738 (792)
                      +.|++||.++++.+.++. ...+|+++.++++|++|.++....|++||..+.   ..++.++. ...|.+..++|+...+
T Consensus       165 ~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k~-P~nV~SASL~P~k~~f  239 (334)
T KOG0278|consen  165 KTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYKM-PCNVESASLHPKKEFF  239 (334)
T ss_pred             CceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeeccC-ccccccccccCCCceE
Confidence            999999999999998887 567899999999999999888889999999765   44544432 3468889999999999


Q ss_pred             EEEEcCCeEEEEECCCCcEEE--EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          739 LVIGCYQSLELWNMSENKTMT--LTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       739 ~sgs~dg~I~IwDl~~~~~~~--~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ++|+.|..++.||+.+++.+.  ..+|.++|.|+.|+|||...++|++||+|+||.
T Consensus       240 VaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  240 VAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ  295 (334)
T ss_pred             EecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence            999999999999999999884  379999999999999999999999999999993

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=4e-29  Score=265.96  Aligned_cols=281  Identities=21%  Similarity=0.394  Sum_probs=243.7

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEECCCCCeEEEEeCC----Cc
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFD----KT  577 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~D----g~  577 (792)
                      ....+.+|...++-..|+|.|.|+|+|...|+|+|||....+  ++.++....++|.+|.|+.|+++|++.++.    |.
T Consensus        51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~  130 (603)
T KOG0318|consen   51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH  130 (603)
T ss_pred             ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence            355678999999999999999999999999999999986533  345677788999999999999998888654    34


Q ss_pred             EEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---eCCeeEEEEecCCCEEEE
Q 003842          578 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLA  654 (792)
Q Consensus       578 V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~lla  654 (792)
                      +.+||-   +..+-.+.+|...|++++|-|...+.+++|++|++|.+|+=.-.+....+   ...+.+++|+|++.++++
T Consensus       131 ~F~~DS---G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat  207 (603)
T KOG0318|consen  131 VFLWDS---GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT  207 (603)
T ss_pred             EEEecC---CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEE
Confidence            666665   45678889999999999999999999999999999999986555544433   345789999999999999


Q ss_pred             EEcCCeEEEEECCCCeEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC---CceE
Q 003842          655 AAAENVVSILDAETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---NKFH  727 (792)
Q Consensus       655 ~s~dg~I~i~D~~t~~~~~~l~---~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~---~~i~  727 (792)
                      ++.||.|.+||-.+++.+..+.   +|.+.|.+++|+||+..|++++.| +++|||+.+.   .++.++....   ....
T Consensus       208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~---slv~t~~~~~~v~dqqv  284 (603)
T KOG0318|consen  208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN---SLVSTWPMGSTVEDQQV  284 (603)
T ss_pred             ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc---ceEEEeecCCchhceEE
Confidence            9999999999999999999998   799999999999999999999999 9999999877   6666665443   3456


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          728 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       728 si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .|.|.  ...|++.+.+|.|.+++......+ .+.+|...|+++..++|+++|++|+.||.|.-|+
T Consensus       285 G~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~  348 (603)
T KOG0318|consen  285 GCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD  348 (603)
T ss_pred             EEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence            67776  557999999999999999988866 7889999999999999999999999999999996

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=1.6e-29  Score=258.98  Aligned_cols=283  Identities=19%  Similarity=0.276  Sum_probs=244.6

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      .+..|..|++.|.+++.+|+.+++|||+.|....||++.++.....+.+|...|+++.|+.+|.+||||+.+|.|+||+.
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCe
Q 003842          584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENV  660 (792)
Q Consensus       584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~  660 (792)
                      .+ +.....+......|.-+.|||.+ .+|++|+.||.|.+|.+.+....+.+.++   .++-.|.|+|++++++..||+
T Consensus       136 st-g~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt  213 (399)
T KOG0296|consen  136 ST-GGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT  213 (399)
T ss_pred             cc-CceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence            98 55555555566788999999975 57779999999999999998777777664   456679999999999999999


Q ss_pred             EEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee--------cCC---CceE
Q 003842          661 VSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS--------CNG---NKFH  727 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~--------~~~---~~i~  727 (792)
                      |++||..++.++..+.. ......++.++..+..++.|+.+ .+++-...++   +.+....        .+.   ..|.
T Consensus       214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg---KVv~~~n~~~~~l~~~~e~~~esve  290 (399)
T KOG0296|consen  214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG---KVVNCNNGTVPELKPSQEELDESVE  290 (399)
T ss_pred             EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc---eEEEecCCCCccccccchhhhhhhh
Confidence            99999999999988874 23457788999999999999888 7888877666   3333333        222   2355


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          728 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       728 si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .+.|+..-+..++|+-||+|.|||+...++.....|...|+.+.|-+ ..+|++++.||.|++||
T Consensus       291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD  354 (399)
T KOG0296|consen  291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD  354 (399)
T ss_pred             hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence            55666677889999999999999999999988899999999999998 78999999999999997

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=2.6e-29  Score=285.75  Aligned_cols=276  Identities=29%  Similarity=0.487  Sum_probs=238.1

Q ss_pred             CcceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003842          429 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA  505 (792)
Q Consensus       429 ~k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~  505 (792)
                      +...+.|++||.++++....   ++|++.+++.                                            .+.
T Consensus       161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------------------------------~~~  196 (456)
T KOG0266|consen  161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------------------------------NLL  196 (456)
T ss_pred             ceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------------------------------hhh
Confidence            45568999999997775444   6676643321                                            133


Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl-~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      ..+.+|...|.+++|+||+++|++++.|++|+|||+ ..+..++++.+|...|++++|+|++++|++|+.|++|+|||++
T Consensus       197 ~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~  276 (456)
T KOG0266|consen  197 RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR  276 (456)
T ss_pred             ccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence            445789999999999999999999999999999999 6668999999999999999999999999999999999999999


Q ss_pred             CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eEEEeeC-----CeeEEEEecCCCEEEEEEc
Q 003842          585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKG-----GTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~~~-----~~~~v~~sp~~~~lla~s~  657 (792)
                      + +++++.+.+|...|++++|++++. +|++++.|+.|++||+.++.  +.+.+..     .+..+.|+|++.++++++.
T Consensus       277 ~-~~~~~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~  354 (456)
T KOG0266|consen  277 T-GECVRKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL  354 (456)
T ss_pred             C-CeEEEeeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence            8 899999999999999999999986 45577889999999999999  4555432     3678999999999999999


Q ss_pred             CCeEEEEECCCCeEEEEecCCCCC---eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC-CCceEEEEEe
Q 003842          658 ENVVSILDAETQACRLSLQGHTKP---IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFH  732 (792)
Q Consensus       658 dg~I~i~D~~t~~~~~~l~~h~~~---V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~-~~~i~si~fs  732 (792)
                      |+.+++||+..++++..+.+|...   +.+..+++.+.++++++.| .|++||+.++   ..+..+.+| ...+..+.++
T Consensus       355 d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~~~  431 (456)
T KOG0266|consen  355 DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLSSH  431 (456)
T ss_pred             CCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceeccccC
Confidence            999999999999999999998775   3444567799999999999 9999999875   666777778 8889999999


Q ss_pred             CCCCEEEEEE--cCCeEEEEECC
Q 003842          733 PTYPSLLVIG--CYQSLELWNMS  753 (792)
Q Consensus       733 pdg~~L~sgs--~dg~I~IwDl~  753 (792)
                      +...++++++  .|+.|++|...
T Consensus       432 ~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  432 PTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCcCeeeecCcCCCceEEEecCC
Confidence            9999999998  67899999764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=5.9e-29  Score=245.36  Aligned_cols=279  Identities=17%  Similarity=0.261  Sum_probs=235.9

Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      .+.||..+++-+.|+.+|.+|++++.|.++.||-..+|+.+.++.+|.+.|+|+..+-+.++|++|+.|.++++||+++ 
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t-   83 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET-   83 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC-
Confidence            4679999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEe----CCCcEEEEEcCC-------CeeEEEe---eCCeeEEEEecCCCEE
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSINN-------GSCTRVF---KGGTAQMRFQPHLGRY  652 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs----~Dg~I~iwdl~~-------~~~~~~~---~~~~~~v~~sp~~~~l  652 (792)
                      ++.+..+. ....|..+.|+.+++.++++..    ..+.|.++|++.       .++...+   ...+..+.|.|.+..|
T Consensus        84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            67777665 5678999999999886665542    247899999983       3333333   2456778899999999


Q ss_pred             EEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEE
Q 003842          653 LAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV  730 (792)
Q Consensus       653 la~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~  730 (792)
                      ++|..+|.|.+||++++ +.+.....|...|+.+++++|..++++++.| +.++||+++.   .+++++.. ..++++.+
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~t-e~PvN~aa  238 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYTT-ERPVNTAA  238 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEeee-ccccccee
Confidence            99999999999999998 5566667899999999999999999999999 9999999776   66666654 56899999


Q ss_pred             EeCCCCEEEEEEcCCeEEE--EECCCCc------------EE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          731 FHPTYPSLLVIGCYQSLEL--WNMSENK------------TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       731 fspdg~~L~sgs~dg~I~I--wDl~~~~------------~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ++|...+++.|+.-...-|  -+.+.++            .+ .+.+|-++|++++|+|+|+..++|++||.|+|.
T Consensus       239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH  314 (327)
T ss_pred             cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence            9999988888876432222  2222221            22 678999999999999999999999999999984

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=4.6e-28  Score=253.25  Aligned_cols=271  Identities=32%  Similarity=0.582  Sum_probs=234.4

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|++++.++++++.+   .+||..+++                                              ...
T Consensus        12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~----------------------------------------------~~~   45 (289)
T cd00200          12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGE----------------------------------------------LLR   45 (289)
T ss_pred             EEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----------------------------------------------cEE
Confidence            4467888998888775533   667765432                                              233


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      .+..|...|.++.|++++++|++++.||.|++||+.+++.+..+..|...|.++.|++++.+|++++.||.|++||+.+ 
T Consensus        46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  124 (289)
T cd00200          46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-  124 (289)
T ss_pred             EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-
Confidence            4567888899999999999999999999999999999888889999999999999999988888888899999999986 


Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeEEE
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSI  663 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I~i  663 (792)
                      ......+..|...|.+++|+|++ .++++++.|+.|++||++.++.+..+..   .+.++.|++++..+++++.++.|++
T Consensus       125 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  203 (289)
T cd00200         125 GKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL  203 (289)
T ss_pred             cEEEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEE
Confidence            56677777899999999999985 4666777799999999998887766653   5678999999999999999999999


Q ss_pred             EECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003842          664 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG  742 (792)
Q Consensus       664 ~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs  742 (792)
                      ||+++++.+..+..|...|.+++|++++.++++++.+ .|++||+.++   ..+..+..+...+.+++|++++.+|++++
T Consensus       204 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  280 (289)
T cd00200         204 WDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLASGS  280 (289)
T ss_pred             EECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEEec
Confidence            9999999998888899999999999999999988856 9999999765   56666778888999999999999999999


Q ss_pred             cCCeEEEEE
Q 003842          743 CYQSLELWN  751 (792)
Q Consensus       743 ~dg~I~IwD  751 (792)
                      .|+.|++|+
T Consensus       281 ~d~~i~iw~  289 (289)
T cd00200         281 ADGTIRIWD  289 (289)
T ss_pred             CCCeEEecC
Confidence            999999996

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7e-29  Score=268.06  Aligned_cols=240  Identities=24%  Similarity=0.371  Sum_probs=217.8

Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      .+.-..-+|.++.|-...+++++|+.|..|+||+..+++.++.++.|.+.|+||+.+|...++++++.|-+|++||.+..
T Consensus        50 sfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~  129 (794)
T KOG0276|consen   50 SFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE  129 (794)
T ss_pred             eeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc
Confidence            34444567899999998899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCC--CEEEEEEcCCeE
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHL--GRYLAAAAENVV  661 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~--~~lla~s~dg~I  661 (792)
                      ..+..+|.+|...|.+|+|+|.+.+.|++++-|++|++|.+....+..++++   +++++++.+.+  .++++|+.|..|
T Consensus       130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ti  209 (794)
T KOG0276|consen  130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTI  209 (794)
T ss_pred             eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceE
Confidence            8889999999999999999999999999999999999999999888888765   57888887765  489999999999


Q ss_pred             EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003842          662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV  740 (792)
Q Consensus       662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s  740 (792)
                      +|||..+..|+.++.+|...|..++|+|.-.+|++|++| +++||...+.   +....+.-....+++++-.+.++.+++
T Consensus       210 KvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~i~v  286 (794)
T KOG0276|consen  210 KVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGKIAV  286 (794)
T ss_pred             EEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCeEEE
Confidence            999999999999999999999999999999999999999 9999998776   555566667788999999998888888


Q ss_pred             EEcCCeEEE
Q 003842          741 IGCYQSLEL  749 (792)
Q Consensus       741 gs~dg~I~I  749 (792)
                      |..+|.|.|
T Consensus       287 G~Deg~i~v  295 (794)
T KOG0276|consen  287 GFDEGSVTV  295 (794)
T ss_pred             eccCCcEEE
Confidence            887776554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=3.3e-30  Score=267.42  Aligned_cols=284  Identities=21%  Similarity=0.305  Sum_probs=243.3

Q ss_pred             eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003842          503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV  580 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I  580 (792)
                      .....+..|.+.|..+.|-++...|++|+.|..|++|++...+  .+.++.+..+.|+++.|.++++++++++.|+.+++
T Consensus       166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~  245 (459)
T KOG0288|consen  166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL  245 (459)
T ss_pred             hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence            3456688999999999999998999999999999999987665  77888899999999999999999999999999999


Q ss_pred             EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCe
Q 003842          581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV  660 (792)
Q Consensus       581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~  660 (792)
                      |+++. .....++.+|.+.|+++.|.-.... +++|+.|.+|++||+....|.+.+.....+..+......++++..|+.
T Consensus       246 Wnvd~-~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~Dkk  323 (459)
T KOG0288|consen  246 WNVDS-LRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKK  323 (459)
T ss_pred             eeccc-hhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccc
Confidence            99997 7788899999999999999876544 779999999999999999999876554444333333566778888999


Q ss_pred             EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC----CCceEEEEEeCCC
Q 003842          661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN----GNKFHSCVFHPTY  735 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~----~~~i~si~fspdg  735 (792)
                      |++||.++..++.....+. .|+++..++++..|.+++.| ++.++|+++..   ....+...    ...++.++|+|++
T Consensus       324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e---I~~~~sA~g~k~asDwtrvvfSpd~  399 (459)
T KOG0288|consen  324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE---IRQTFSAEGFKCASDWTRVVFSPDG  399 (459)
T ss_pred             eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccccc---EEEEeeccccccccccceeEECCCC
Confidence            9999999999999988765 89999999999999999988 99999998863   33333221    2337889999999


Q ss_pred             CEEEEEEcCCeEEEEECCCCcEEE-Ecc-cC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          736 PSLLVIGCYQSLELWNMSENKTMT-LTA-HE-GLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       736 ~~L~sgs~dg~I~IwDl~~~~~~~-~~~-h~-~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .|+++|+.||.|+||++.++++.. +.. +. ..|++++|++.|.+|++++.++.+.+|.
T Consensus       400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            999999999999999999999873 332 22 2699999999999999999999999994

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.7e-29  Score=277.75  Aligned_cols=280  Identities=22%  Similarity=0.386  Sum_probs=248.8

Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG  587 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~  587 (792)
                      ++..+..|..++|+|...+++++-..|.|.+||..-+.++..|.+|.++|..|+|+|...+|++|+.|-.|+||+..+ .
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-r   83 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-R   83 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-c
Confidence            455677899999999999999999999999999999999999999999999999999999999999999999999998 7


Q ss_pred             ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCeEEEE
Q 003842          588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSIL  664 (792)
Q Consensus       588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~I~i~  664 (792)
                      +++.++.+|-+.|..+.||+.-..++ ++++|-+|+||+..+++|+..+.++   +.|..|+|....+++++-|-+|+||
T Consensus        84 rclftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW  162 (1202)
T KOG0292|consen   84 RCLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW  162 (1202)
T ss_pred             eehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence            88999999999999999999877555 9999999999999999999999876   4667899999999999999999999


Q ss_pred             ECCCC-----------------------------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc
Q 003842          665 DAETQ-----------------------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE  714 (792)
Q Consensus       665 D~~t~-----------------------------~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~  714 (792)
                      |+...                             -..+.+++|...|+-++|+|.-.+|++|++| .|++|.+...+ .-
T Consensus       163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-aW  241 (1202)
T KOG0292|consen  163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AW  241 (1202)
T ss_pred             eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-ce
Confidence            97421                             1234578899999999999999999999999 99999997543 24


Q ss_pred             eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          715 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       715 ~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      .+.+..+|.+.|.++.|+|.-+.|++.+.|++|+|||+...+.+ ++....+..+.++-+|..+++|.| +|+-+.||
T Consensus       242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VF  318 (1202)
T KOG0292|consen  242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVF  318 (1202)
T ss_pred             eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEE
Confidence            56677889999999999999999999999999999999998887 566666789999999999988765 55555555

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=3.8e-29  Score=250.66  Aligned_cols=285  Identities=21%  Similarity=0.374  Sum_probs=239.4

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC------------------CceeEEeccCCCCEEEEEECCC
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSPS  565 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t------------------~~~~~~l~~h~~~V~~i~fspd  565 (792)
                      +...+..|..++.|.+|++||.++|+|+.|..|+|+|++.                  .-.++++..|.+.|+++.|+|.
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            4566789999999999999999999999999999999861                  1356788899999999999999


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCc-eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE------eeC
Q 003842          566 MPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------FKG  638 (792)
Q Consensus       566 g~~Lasgs~Dg~V~IWdl~s~~~-~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~------~~~  638 (792)
                      ...|++|+.|++|++||+..... ...........|.+|.|+|.|++++ .|..-.++++||+++..|...      ..+
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht~  262 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHTG  262 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCccccccc
Confidence            99999999999999999986321 1112223456899999999988655 888889999999999988754      346


Q ss_pred             CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC-CC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 003842          639 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC  715 (792)
Q Consensus       639 ~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~-h~-~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~  715 (792)
                      .+.++.+++.++.+++++.||.|++||--+++|+.++.. |. ..|.+..|..+++||++.+.| .+++|.+.++   ++
T Consensus       263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R~  339 (430)
T KOG0640|consen  263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---RM  339 (430)
T ss_pred             ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---ce
Confidence            788999999999999999999999999999999988864 54 469999999999999999999 9999999888   67


Q ss_pred             EEEeecCCCc-----eEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCc
Q 003842          716 VHELSCNGNK-----FHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKF  787 (792)
Q Consensus       716 i~~~~~~~~~-----i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~--~~~~h~~~V~sl~fspdg~~LaSgs~DG~  787 (792)
                      +.++.+.+..     -+...|+....|++.-... +.++-||.++...+  ...+|.+.+..+.-+|.+..+++|+.|-.
T Consensus       340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r  419 (430)
T KOG0640|consen  340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR  419 (430)
T ss_pred             EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence            7776654221     2345677777777766543 68999999998766  44589999999999999999999999999


Q ss_pred             EEEeC
Q 003842          788 VKLWK  792 (792)
Q Consensus       788 I~IWd  792 (792)
                      +++|.
T Consensus       420 aRFWy  424 (430)
T KOG0640|consen  420 ARFWY  424 (430)
T ss_pred             eeeee
Confidence            99993

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=5.4e-29  Score=264.00  Aligned_cols=292  Identities=16%  Similarity=0.212  Sum_probs=235.1

Q ss_pred             CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----eeEEe-ccCCCCEEEEEECCCCCeEEEEe
Q 003842          499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----SKTNL-EEHSSLITDVRFSPSMPRLATSS  573 (792)
Q Consensus       499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~----~~~~l-~~h~~~V~~i~fspdg~~Lasgs  573 (792)
                      ..+...-..+.+|+..|.++++.|.|-.|++|+.|..|++||+....    ..+.| ......|.++.|++.+..|++.+
T Consensus       154 ~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs  233 (641)
T KOG0772|consen  154 LIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS  233 (641)
T ss_pred             cCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence            34455566789999999999999999999999999999999987432    22222 24566799999999999999999


Q ss_pred             CCCcEEEEeCCCCCcee------------EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEee---
Q 003842          574 FDKTVRVWDADNPGYSL------------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFK---  637 (792)
Q Consensus       574 ~Dg~V~IWdl~s~~~~i------------~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~~---  637 (792)
                      ....++|+|-+. ...+            ...++|...++|.+|+|+.+..|++|+.||++||||++..+. +.+++   
T Consensus       234 g~aqakl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  234 GSAQAKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             cCcceeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence            899999999874 2222            233589999999999999999999999999999999987543 23332   


Q ss_pred             -----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE---EEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEE
Q 003842          638 -----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC---RLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWT  706 (792)
Q Consensus       638 -----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~---~~~l~~h~~--~V~sv~~spdg~~Las~s~d-~I~IwD  706 (792)
                           ..+..++|++++..|++++.||.|.+||......   ...-.+|..  .|+||.|++||++|++-+.| ++++||
T Consensus       313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence                 2467799999999999999999999999865422   233356777  89999999999999999988 999999


Q ss_pred             CCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEE
Q 003842          707 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYV  779 (792)
Q Consensus       707 l~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~------dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~L  779 (792)
                      ++..++...+..-......-+.|+|+|+.+.|++|..      .|.+++||..+...+ .+.-....|..+.|+|.-+.|
T Consensus       393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi  472 (641)
T KOG0772|consen  393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQI  472 (641)
T ss_pred             ccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhe
Confidence            9976543333333334455788999999999999865      368999999998877 555557789999999988888


Q ss_pred             EEEeCCCcEEEe
Q 003842          780 ASASHDKFVKLW  791 (792)
Q Consensus       780 aSgs~DG~I~IW  791 (792)
                      +.++.||.++||
T Consensus       473 ~~gsgdG~~~vy  484 (641)
T KOG0772|consen  473 FAGSGDGTAHVY  484 (641)
T ss_pred             eeecCCCceEEE
Confidence            899999999986

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=2.6e-29  Score=256.14  Aligned_cols=242  Identities=22%  Similarity=0.443  Sum_probs=221.5

Q ss_pred             CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEE
Q 003842          544 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR  623 (792)
Q Consensus       544 ~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~  623 (792)
                      .+..+.+.+|.+.|.||++.|.+.+|++|+.|++|+|||+.+ +....++.+|...|..+++++-..++| +++.|+.|+
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlF-s~gedk~VK  218 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLF-SAGEDKQVK  218 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeecccCceEE-EecCCCeeE
Confidence            456677889999999999999999999999999999999998 788889999999999999999877655 999999999


Q ss_pred             EEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 003842          624 YWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED  700 (792)
Q Consensus       624 iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d  700 (792)
                      .||++..+.++.+.++   +.++..+|....|++++.|.+++|||+++...+..+.+|..+|..+.+.|-..-+++|+.|
T Consensus       219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D  298 (460)
T KOG0285|consen  219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD  298 (460)
T ss_pred             EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence            9999999999988765   6678899999999999999999999999999999999999999999999988889999999


Q ss_pred             -eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 003842          701 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY  778 (792)
Q Consensus       701 -~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~  778 (792)
                       +|++||++.+   +....+..|...+.+++.+|....|++++.| .|+-|++..+..+ .+.+|...|++++...|+ +
T Consensus       299 ~tvrlWDl~ag---kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v  373 (460)
T KOG0285|consen  299 STVRLWDLRAG---KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V  373 (460)
T ss_pred             ceEEEeeeccC---ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-e
Confidence             9999999887   6777888899999999999999888887776 6999999999887 788999999999998776 7


Q ss_pred             EEEEeCCCcEEEeC
Q 003842          779 VASASHDKFVKLWK  792 (792)
Q Consensus       779 LaSgs~DG~I~IWd  792 (792)
                      +++|++.|.|.+||
T Consensus       374 ~~~G~dng~~~fwd  387 (460)
T KOG0285|consen  374 LVSGGDNGSIMFWD  387 (460)
T ss_pred             EEEcCCceEEEEEe
Confidence            88899999999997

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.4e-27  Score=241.76  Aligned_cols=283  Identities=20%  Similarity=0.306  Sum_probs=238.8

Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC--CCcEE
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTVR  579 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~--Dg~V~  579 (792)
                      |+..+.++.-.+.|.++.|+.+|.+|++++.|..|+|||..+++.++++..+...|..++|......++.++.  |.+|+
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence            4556667778889999999999999999999999999999999999999999999999999888777777776  88999


Q ss_pred             EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC-CeeEEEEecCCCEEEEEEcC
Q 003842          580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-GTAQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-~~~~v~~sp~~~~lla~s~d  658 (792)
                      ..++.+ .+.++.|.+|...|.+|+.+|-++ .|++++.|++|++||++..+|...+.. +...++|.|.|-.++++...
T Consensus        84 yLsl~d-NkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   84 YLSLHD-NKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGS  161 (311)
T ss_pred             EEEeec-CceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCC
Confidence            999998 788999999999999999999975 566999999999999999888877664 45668899998888877777


Q ss_pred             CeEEEEECCCC--eEEEEe--c-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCC---ceEEE
Q 003842          659 NVVSILDAETQ--ACRLSL--Q-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN---KFHSC  729 (792)
Q Consensus       659 g~I~i~D~~t~--~~~~~l--~-~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~---~i~si  729 (792)
                      +.|++||++..  .+..++  . +.....+.|.|+|||++|+.++.. .+++.|.-+|.   ....+..+..   --..+
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~a  238 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---VKSTFSGYPNAGNLPLSA  238 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---EeeeEeeccCCCCcceeE
Confidence            79999999874  222233  2 346678999999999999988888 89999998774   4444444333   23678


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          730 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~-h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      +|+||+++|++|+.||+|++|+++++..+ .+.+ +.+++.++.|+|.-.++++++  ..+.+|
T Consensus       239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw  300 (311)
T KOG1446|consen  239 TFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW  300 (311)
T ss_pred             EECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence            99999999999999999999999999888 5555 789999999999887777764  467777

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=8.9e-29  Score=256.23  Aligned_cols=277  Identities=19%  Similarity=0.287  Sum_probs=234.8

Q ss_pred             CcceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003842          429 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA  505 (792)
Q Consensus       429 ~k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~  505 (792)
                      ..-.+.||++|+|+++++++   .||+                                           +.....++..
T Consensus       226 EVWfl~FS~nGkyLAsaSkD~Taiiw~-------------------------------------------v~~d~~~kl~  262 (519)
T KOG0293|consen  226 EVWFLQFSHNGKYLASASKDSTAIIWI-------------------------------------------VVYDVHFKLK  262 (519)
T ss_pred             cEEEEEEcCCCeeEeeccCCceEEEEE-------------------------------------------EecCcceeee
Confidence            45678999999999887766   4443                                           3334447788


Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      +++.+|..+|..+.||||.++|++|+.|..+.+||+.+|.....+. ++...+.+++|.|||..|++|+.|+.|..||++
T Consensus       263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD  342 (519)
T KOG0293|consen  263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD  342 (519)
T ss_pred             eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence            9999999999999999999999999999999999999999888776 457889999999999999999999999999998


Q ss_pred             CCCceeEEecccC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--eCCeeEEEEecCCCEEEEEEcCCeE
Q 003842          585 NPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVV  661 (792)
Q Consensus       585 s~~~~i~~~~~h~-~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~lla~s~dg~I  661 (792)
                      .  ..+..+.+-. ..|.+++..+||++++ +.+.|..|++|+.++......+  ..++.+++++.+++++++.-.+..|
T Consensus       343 g--n~~~~W~gvr~~~v~dlait~Dgk~vl-~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei  419 (519)
T KOG0293|consen  343 G--NILGNWEGVRDPKVHDLAITYDGKYVL-LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEI  419 (519)
T ss_pred             c--chhhcccccccceeEEEEEcCCCcEEE-EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCee
Confidence            4  4444444433 5699999999998877 4557999999999887766443  4578899999999999999999999


Q ss_pred             EEEECCCCeEEEEecCCCCC--eEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-C
Q 003842          662 SILDAETQACRLSLQGHTKP--IDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-P  736 (792)
Q Consensus       662 ~i~D~~t~~~~~~l~~h~~~--V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg-~  736 (792)
                      ++||++..+.+..+.+|...  |..-||-. +..++++|++| .|+||+..++   +.+..+.+|...+.+++|+|.. .
T Consensus       420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswNP~~p~  496 (519)
T KOG0293|consen  420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWNPADPE  496 (519)
T ss_pred             EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ceeEeecCCcceeeEEecCCCCHH
Confidence            99999999999999998764  44445654 45799999999 9999999887   8999999999999999999965 5


Q ss_pred             EEEEEEcCCeEEEEECCC
Q 003842          737 SLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       737 ~L~sgs~dg~I~IwDl~~  754 (792)
                      .+|+++.||+|+||....
T Consensus       497 m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  497 MFASASDDGTIRIWGPSD  514 (519)
T ss_pred             HhhccCCCCeEEEecCCc
Confidence            788999999999998764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=9.5e-28  Score=240.57  Aligned_cols=271  Identities=23%  Similarity=0.357  Sum_probs=232.5

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...++|.|||..+++++.+   -||++....                                             +...
T Consensus        50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc---------------------------------------------eN~~   84 (338)
T KOG0265|consen   50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDC---------------------------------------------ENFW   84 (338)
T ss_pred             EEEEEECCCCCeEeecCCcceEEEEeccccc---------------------------------------------ccee
Confidence            4578999999999999888   457753211                                             1334


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADN  585 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s  585 (792)
                      .+++|.+.|..+.|.+|++.|++++.|++|+.||+++|+.++.+++|...|+.+.-+.-|. ++.+++.||+++|||+++
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence            5679999999999999999999999999999999999999999999999999998555444 677889999999999997


Q ss_pred             CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeEE
Q 003842          586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVS  662 (792)
Q Consensus       586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I~  662 (792)
                       +..++++. ....++++.|...+..++ +|+-|+.|++||++......++.+   .+..+..++++.++++-+.|.+|+
T Consensus       165 -k~~~~t~~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvr  241 (338)
T KOG0265|consen  165 -KEAIKTFE-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVR  241 (338)
T ss_pred             -cchhhccc-cceeEEEEEeccccccee-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEE
Confidence             55566554 567899999998877666 999999999999999999888876   467789999999999999999999


Q ss_pred             EEECCCC----eEEEEecCCC----CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC
Q 003842          663 ILDAETQ----ACRLSLQGHT----KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP  733 (792)
Q Consensus       663 i~D~~t~----~~~~~l~~h~----~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp  733 (792)
                      +||++-.    +++..+.+|.    .....++|+|+++++.+++.| .+++||....   .++..+.+|.+.|.++.|+|
T Consensus       242 vwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp  318 (338)
T KOG0265|consen  242 VWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHP  318 (338)
T ss_pred             EEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecC
Confidence            9999864    5577777653    345678899999999999999 9999999765   78999999999999999999


Q ss_pred             CCCEEEEEEcCCeEEEEE
Q 003842          734 TYPSLLVIGCYQSLELWN  751 (792)
Q Consensus       734 dg~~L~sgs~dg~I~IwD  751 (792)
                      ....|.+++.|.+|++=+
T Consensus       319 ~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  319 TEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             CCcEEEEeccCceeEeec
Confidence            999999999999998744

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=1.3e-29  Score=257.02  Aligned_cols=273  Identities=21%  Similarity=0.409  Sum_probs=228.6

Q ss_pred             CCceeeeccCCC---CCCCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 003842          472 DDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT  548 (792)
Q Consensus       472 d~~v~~~l~~d~---~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~  548 (792)
                      .+.+.+.-.+|+   .+..|.++++||...   +...+.+.||++.|.|+.|..  +.|++|+.|.+|+|||+++++++.
T Consensus       197 skgVYClQYDD~kiVSGlrDnTikiWD~n~---~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNS---LECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             CCceEEEEecchhhhcccccCceEEecccc---HHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence            344555544444   456778888887654   457788999999999999964  499999999999999999999999


Q ss_pred             EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc--eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 003842          549 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS  626 (792)
Q Consensus       549 ~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~--~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwd  626 (792)
                      ++-+|...|..+.|+.  .++++++.|.+|.|||+..+..  +.+.+.+|...|+.+.|+.   .+|++++.|.+|++|+
T Consensus       272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~  346 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWS  346 (499)
T ss_pred             HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEe
Confidence            9999999999999974  4999999999999999987542  3456779999999999973   4888999999999999


Q ss_pred             cCCCeeEEEeeCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEE
Q 003842          627 INNGSCTRVFKGGTAQMRFQP-HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV  704 (792)
Q Consensus       627 l~~~~~~~~~~~~~~~v~~sp-~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~I  704 (792)
                      +.++++++++.++...++..- .+..+++|++|.+|++||++.|+++..+++|+.-|.||.|+  .+.|++|+.| +|+|
T Consensus       347 ~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikv  424 (499)
T KOG0281|consen  347 TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKV  424 (499)
T ss_pred             ccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEE
Confidence            999999999988877766544 44556677889999999999999999999999999999995  5779999988 9999


Q ss_pred             EECCCCCCc------ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          705 WTVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       705 wDl~s~~~~------~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      ||+..+...      .|+..+..|.+.|..+.|  |...|++++.|.+|.|||+.++...
T Consensus       425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             EecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence            999876443      356667778888888888  4557999999999999999877544

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.5e-28  Score=241.06  Aligned_cols=276  Identities=21%  Similarity=0.375  Sum_probs=230.9

Q ss_pred             eEEEEEcC-CCCEEEEEe-------CCCeEEEEECCCCceeEEec--cCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeC
Q 003842          515 VICCHFSS-DGKLLATGG-------HDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPS-MPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       515 V~~lafsp-dg~~Lasgs-------~Dg~I~vWdl~t~~~~~~l~--~h~~~V~~i~fspd-g~~Lasgs~Dg~V~IWdl  583 (792)
                      =.++.||| -.++||++.       ..|++.|.++....-+..+.  .-.+.+.+++|+++ .+.+++++.||+++|||+
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence            36788998 233444432       46889999997555444443  35678999999995 458899999999999999


Q ss_pred             CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeE---EEEecCCC-EEEEEEcCC
Q 003842          584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHLG-RYLAAAAEN  659 (792)
Q Consensus       584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~---v~~sp~~~-~lla~s~dg  659 (792)
                      ..+..++..++.|..+|.++.|++..+..+++++.|++|++|+......+.+|+++..+   ..|+|... .+++++.|+
T Consensus        91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~  170 (311)
T KOG0277|consen   91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG  170 (311)
T ss_pred             CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence            88888999999999999999999998888889999999999999999999999887554   67898765 455677799


Q ss_pred             eEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-C
Q 003842          660 VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-P  736 (792)
Q Consensus       660 ~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg-~  736 (792)
                      .+++||++.......+..|...|.|+.|+. +.++|++++.| .|++||+++.+  .++.++.+|...|+.+.|+|.. .
T Consensus       171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~  248 (311)
T KOG0277|consen  171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHAS  248 (311)
T ss_pred             eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhh
Confidence            999999988655555889999999999998 55688888888 99999999765  5688889999999999999965 5


Q ss_pred             EEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeC-CCCEEEEEeCCCcEEEeC
Q 003842          737 SLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK  792 (792)
Q Consensus       737 ~L~sgs~dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fsp-dg~~LaSgs~DG~I~IWd  792 (792)
                      .|++++.|-+++|||.......  +..-|...|..+.|++ +..++|+++.|+.++||+
T Consensus       249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            6788889999999999865544  5667899999999987 677999999999999996

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.2e-29  Score=257.43  Aligned_cols=280  Identities=17%  Similarity=0.330  Sum_probs=236.2

Q ss_pred             eeeeeeeecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003842          502 FKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV  580 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I  580 (792)
                      -..+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...++..++..|.+.|..|++..  ..+++++.|++|+.
T Consensus        56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ  133 (433)
T ss_pred             ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence            34567789999999999999987 7899999999999999999999999999999999999987  68999999999999


Q ss_pred             EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEE-
Q 003842          581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAA-  656 (792)
Q Consensus       581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s-  656 (792)
                      |.++.  .++.++. ....+..|+-+.. ...++||+.  .|.|||......+..+.   ..+.++.|+|....+++++ 
T Consensus       134 wk~~~--~p~~til-g~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~  207 (433)
T KOG0268|consen  134 WKIDG--PPLHTIL-GKSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA  207 (433)
T ss_pred             eeccC--Ccceeee-ccccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec
Confidence            99985  3566665 3455667776554 346778864  59999998888887765   3467899999988777666 


Q ss_pred             cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003842          657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY  735 (792)
Q Consensus       657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg  735 (792)
                      +|+.|.+||++...++..+. -...-+.|||+|++-.|+++++| .++.||++...  ..+....+|.+.+.++.|+|.|
T Consensus       208 sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG  284 (433)
T KOG0268|consen  208 SDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTG  284 (433)
T ss_pred             cCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCc
Confidence            79999999999998776554 22345689999988889999999 99999998653  5677788899999999999999


Q ss_pred             CEEEEEEcCCeEEEEECCCCcEEEEc--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          736 PSLLVIGCYQSLELWNMSENKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       736 ~~L~sgs~dg~I~IwDl~~~~~~~~~--~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ..|++|+.|.+|+||.+..+....+.  ..-..|.|+.|+.|.+||++||+|+.|++|+
T Consensus       285 ~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk  343 (433)
T KOG0268|consen  285 QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK  343 (433)
T ss_pred             chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence            99999999999999999988765322  3345799999999999999999999999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=9.8e-28  Score=267.32  Aligned_cols=241  Identities=24%  Similarity=0.418  Sum_probs=209.2

Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      .|.+|.++|..++|+|.+.++++|+.|.+|+||+.++.+++.++.+|.+.|..+.|++.-.+|+++|.|-+|+||+..+ 
T Consensus        46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-  124 (1202)
T KOG0292|consen   46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-  124 (1202)
T ss_pred             hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-
Confidence            3567999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----------------------------E-EEee
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----------------------------T-RVFK  637 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~----------------------------~-~~~~  637 (792)
                      +.++..+++|...|.|..|+|.. .++++++-|-+||+||+...+.                            + ..++
T Consensus       125 r~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE  203 (1202)
T KOG0292|consen  125 RKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE  203 (1202)
T ss_pred             CceEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence            88999999999999999999974 4788999999999999853210                            1 1222


Q ss_pred             ---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 003842          638 ---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS  711 (792)
Q Consensus       638 ---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~--~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~  711 (792)
                         .+++-++|+|.-..+++|+.|..|++|.+...+  .+.+..+|-..|.|+-|+|.-++|++.++| .|+|||+... 
T Consensus       204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-  282 (1202)
T KOG0292|consen  204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-  282 (1202)
T ss_pred             ccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-
Confidence               246678899999999999999999999987654  345678899999999999999999999999 9999999765 


Q ss_pred             CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003842          712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~  753 (792)
                        ..+..+......++.++.+|..+.+++|. |+.+.||.++
T Consensus       283 --t~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkle  321 (1202)
T KOG0292|consen  283 --TSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLE  321 (1202)
T ss_pred             --cceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEc
Confidence              77778877888999999999998666554 4445555554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.4e-28  Score=234.03  Aligned_cols=270  Identities=23%  Similarity=0.352  Sum_probs=234.7

Q ss_pred             CcceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003842          429 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA  505 (792)
Q Consensus       429 ~k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~  505 (792)
                      ....+.|.-||.|.++.+++   +|||+..|.                                              ++
T Consensus        19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~----------------------------------------------li   52 (307)
T KOG0316|consen   19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA----------------------------------------------LI   52 (307)
T ss_pred             ceEEEEEccCCCEEEEcCCCceEEeecccccc----------------------------------------------ee
Confidence            35578999999999998877   778876654                                              45


Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      +++.+|...|..++.+.|...|++|+.|..|.+||+++|+.++.+.+|.+.|+.+.|+.+...+++|+.|.+|++||.++
T Consensus        53 ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS  132 (307)
T KOG0316|consen   53 KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS  132 (307)
T ss_pred             eeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CC-ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-eCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003842          586 PG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KGGTAQMRFQPHLGRYLAAAAENVVSI  663 (792)
Q Consensus       586 ~~-~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~~~~~v~~sp~~~~lla~s~dg~I~i  663 (792)
                      .. +++..+......|.+|.+.   ++.|++|+.||+++.||++.|.....+ ..++++++|+++++..++++-|+.|++
T Consensus       133 ~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrL  209 (307)
T KOG0316|consen  133 RSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRL  209 (307)
T ss_pred             CCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeee
Confidence            43 5778888888999999997   456779999999999999999887654 568899999999999999999999999


Q ss_pred             EECCCCeEEEEecCCCCCe--EEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc-eEEEEEeCCCCEEE
Q 003842          664 LDAETQACRLSLQGHTKPI--DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK-FHSCVFHPTYPSLL  739 (792)
Q Consensus       664 ~D~~t~~~~~~l~~h~~~V--~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~-i~si~fspdg~~L~  739 (792)
                      .|-++++.+..+++|...-  ...+++....++++|++| .|++||+...   ..+..+..+... +.++.++|.-..|+
T Consensus       210 lDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~sk~~~~~~v~v~dl~~hp~~~~f~  286 (307)
T KOG0316|consen  210 LDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQISKLSVVSTVIVTDLSCHPTMDDFI  286 (307)
T ss_pred             cccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeeeeeccCCceeEEeeecccCcccee
Confidence            9999999999999987643  345677788899999999 9999999765   667777777666 89999999888787


Q ss_pred             EEEcCCeEEEEE
Q 003842          740 VIGCYQSLELWN  751 (792)
Q Consensus       740 sgs~dg~I~IwD  751 (792)
                      ++...+ +.+|-
T Consensus       287 ~A~~~~-~~~~~  297 (307)
T KOG0316|consen  287 TATGHG-DLFWY  297 (307)
T ss_pred             EecCCc-eecee
Confidence            776544 44443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=6.5e-28  Score=248.20  Aligned_cols=277  Identities=21%  Similarity=0.348  Sum_probs=233.5

Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC---eEEEEeCCCcEEEEeCCC
Q 003842          509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP---RLATSSFDKTVRVWDADN  585 (792)
Q Consensus       509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~---~Lasgs~Dg~V~IWdl~s  585 (792)
                      ..|.+.|.++...  +++|++|++||.++|||.. |+....+.+|.+.|.+++|.-.+.   .|++++.|.++++|.++.
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV  178 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence            3688889888887  6799999999999999964 789999999999999988865333   599999999999999986


Q ss_pred             CCce---eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-------------------------eEEEee
Q 003842          586 PGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-------------------------CTRVFK  637 (792)
Q Consensus       586 ~~~~---i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-------------------------~~~~~~  637 (792)
                      +...   +....+|...|-+|...+++. .|++|+.|..|+||+..+..                         .+..+.
T Consensus       179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~  257 (423)
T KOG0313|consen  179 GENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE  257 (423)
T ss_pred             chhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence            4432   233448999999999999976 56699999999999932211                         111122


Q ss_pred             ---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc
Q 003842          638 ---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG  713 (792)
Q Consensus       638 ---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~  713 (792)
                         ..+..+.|++ ...+++++.|.+|++||++++..+.++.+ ...++|+.+++..++|++|+.| .|++||-+++...
T Consensus       258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs  335 (423)
T KOG0313|consen  258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS  335 (423)
T ss_pred             ccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCc
Confidence               3456678887 68899999999999999999998888774 5679999999999999999999 9999999998777


Q ss_pred             ceEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCc-E-EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003842          714 ECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENK-T-MTLTAHEGLIAALAVSTETGYVASASHDKFVKL  790 (792)
Q Consensus       714 ~~i~~~~~~~~~i~si~fspdg~-~L~sgs~dg~I~IwDl~~~~-~-~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I  790 (792)
                      .....+.+|.+.|.++.|+|... .|++++.|+++++||+++.+ . ..+.+|...|.++.|. ++.+|++||.|..|+|
T Consensus       336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i  414 (423)
T KOG0313|consen  336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRI  414 (423)
T ss_pred             eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEE
Confidence            77889999999999999999765 57788899999999999876 4 4888999999999996 5679999999999999


Q ss_pred             eC
Q 003842          791 WK  792 (792)
Q Consensus       791 Wd  792 (792)
                      ++
T Consensus       415 ~~  416 (423)
T KOG0313|consen  415 FK  416 (423)
T ss_pred             ec
Confidence            84

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=7.7e-29  Score=249.20  Aligned_cols=276  Identities=24%  Similarity=0.425  Sum_probs=239.2

Q ss_pred             eEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeeee
Q 003842          432 LMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV  508 (792)
Q Consensus       432 ~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~l  508 (792)
                      +-.|||||.|+++++-+   .+||..+|++++++.....+                                      .|
T Consensus       218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd--------------------------------------~f  259 (508)
T KOG0275|consen  218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD--------------------------------------NF  259 (508)
T ss_pred             heeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc--------------------------------------ce
Confidence            56899999999997665   89999999998876643222                                      34


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003842          509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG  587 (792)
Q Consensus       509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~  587 (792)
                      .-+.+.|.|++||.|..+||+|+.||+|+||.+.+|.+++.+. .|...|+|+.|+.|+..+++++.|.+|+|.-+.+ +
T Consensus       260 MMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-G  338 (508)
T KOG0275|consen  260 MMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-G  338 (508)
T ss_pred             eecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-c
Confidence            5677889999999999999999999999999999999999998 8999999999999999999999999999999998 8


Q ss_pred             ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC-----CeeEEEEecCC-CEEEEEEcCCeE
Q 003842          588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHL-GRYLAAAAENVV  661 (792)
Q Consensus       588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~-~~lla~s~dg~I  661 (792)
                      ++++.+.+|...|+...|.++|.+++ +++.||+|++|+.++.+|+.+|+.     .+..+...|.+ ..++++...++|
T Consensus       339 K~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv  417 (508)
T KOG0275|consen  339 KCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV  417 (508)
T ss_pred             hhHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence            89999999999999999999988665 999999999999999999998874     34455555554 567778888999


Q ss_pred             EEEECCCCeEEEEecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003842          662 SILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       662 ~i~D~~t~~~~~~l~~---h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~  737 (792)
                      +|.++. +..++.+..   ..+...+.+.+|.|.++++.++| .++.|.+.++   +.-+.+..|...+..++-+|..+.
T Consensus       418 ~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNl  493 (508)
T KOG0275|consen  418 YIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNL  493 (508)
T ss_pred             EEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccch
Confidence            999885 455666543   33456677899999999999999 8999999887   677788889999999999999999


Q ss_pred             EEEEEcCCeEEEEE
Q 003842          738 LLVIGCYQSLELWN  751 (792)
Q Consensus       738 L~sgs~dg~I~IwD  751 (792)
                      |++-+.||.+++|.
T Consensus       494 lAsYsEDgllKLWk  507 (508)
T KOG0275|consen  494 LASYSEDGLLKLWK  507 (508)
T ss_pred             hhhhcccchhhhcC
Confidence            99999999999995

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1.2e-26  Score=282.37  Aligned_cols=238  Identities=18%  Similarity=0.255  Sum_probs=199.6

Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCce
Q 003842          512 TSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS  589 (792)
Q Consensus       512 ~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~~~  589 (792)
                      ...|.+++|++ ++.+||+++.||.|+|||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|+|||+.+ +..
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~  610 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVS  610 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcE
Confidence            45799999987 578999999999999999999999999999999999999997 788999999999999999987 566


Q ss_pred             eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEEe---eCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003842          590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILD  665 (792)
Q Consensus       590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~---~~~~~~v~~sp~~~~lla~s~dg~I~i~D  665 (792)
                      +..+..+ ..|.++.|++....+|++|+.||.|++||++..+ .+..+   ...+..+.|. ++..+++++.|+.|++||
T Consensus       611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd  688 (793)
T PLN00181        611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD  688 (793)
T ss_pred             EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence            6666644 6799999976656678899999999999998765 33333   3456778886 678999999999999999


Q ss_pred             CCC------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce--------E--EEeecCCCceEE
Q 003842          666 AET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC--------V--HELSCNGNKFHS  728 (792)
Q Consensus       666 ~~t------~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~--------i--~~~~~~~~~i~s  728 (792)
                      ++.      ..++..+.+|...+.+++|++++.+|++|+.| .|++|+.........        +  .....+...|.+
T Consensus       689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~  768 (793)
T PLN00181        689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS  768 (793)
T ss_pred             CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence            974      35778899999999999999999999999999 999999865421100        0  011234456999


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEEC
Q 003842          729 CVFHPTYPSLLVIGCYQSLELWNM  752 (792)
Q Consensus       729 i~fspdg~~L~sgs~dg~I~IwDl  752 (792)
                      ++|++++..|++++.+|.|+||++
T Consensus       769 v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        769 VCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEcCCCCeEEEecCCCcEEEEec
Confidence            999999999999999999999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=4.4e-27  Score=232.82  Aligned_cols=262  Identities=23%  Similarity=0.368  Sum_probs=215.7

Q ss_pred             CCCCCCCcceeccCCcceeeeeee-ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeEEeccCCCCEEEEE
Q 003842          485 DPRDAGGRGMDVSQGFSFKEANSV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVR  561 (792)
Q Consensus       485 ~~~d~~~~~~d~~~~~~~~~~~~l-~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~--t~~~~~~l~~h~~~V~~i~  561 (792)
                      .+.|..+++|+...+.++.+...+ .+|+..|..++|+|.|++||+|+.|.++.||.-.  +.+++.++++|...|.|++
T Consensus        33 cg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Va  112 (312)
T KOG0645|consen   33 CGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVA  112 (312)
T ss_pred             ecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEE
Confidence            445667778887766667777666 4899999999999999999999999999999865  4578899999999999999


Q ss_pred             ECCCCCeEEEEeCCCcEEEEeCCCC--CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-C--CeeEEEe
Q 003842          562 FSPSMPRLATSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-N--GSCTRVF  636 (792)
Q Consensus       562 fspdg~~Lasgs~Dg~V~IWdl~s~--~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~-~--~~~~~~~  636 (792)
                      |+++|.+||+++.|+.|-||.+..+  -.++..+..|...|..+.|||.. .||++++.|.+|++|+-. .  -.++..+
T Consensus       113 ws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl  191 (312)
T KOG0645|consen  113 WSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTL  191 (312)
T ss_pred             EcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEe
Confidence            9999999999999999999999843  35678889999999999999985 478899999999999877 2  3466666


Q ss_pred             eCC---eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC
Q 003842          637 KGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE  712 (792)
Q Consensus       637 ~~~---~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~  712 (792)
                      .++   +.++.|.+.+.++++++.|++|+||-..+.-.    ..|...+..+.|.  ...|++++.| .|++|.......
T Consensus       192 ~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d  265 (312)
T KOG0645|consen  192 DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPD  265 (312)
T ss_pred             cCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCC
Confidence            654   56789999999999999999999998663211    1277889999998  5578888877 999998764311


Q ss_pred             ---cceE-EEeecCCCceEEEEEeCC-CCEEEEEEcCCeEEEEECC
Q 003842          713 ---GECV-HELSCNGNKFHSCVFHPT-YPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       713 ---~~~i-~~~~~~~~~i~si~fspd-g~~L~sgs~dg~I~IwDl~  753 (792)
                         .+.+ .....|+..|+++.|.|. .+.|++++.||.|++|.+.
T Consensus       266 ~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  266 EPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence               1222 244567889999999995 6789999999999999874

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.2e-27  Score=268.73  Aligned_cols=242  Identities=22%  Similarity=0.335  Sum_probs=199.2

Q ss_pred             eeee-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------------------------------------
Q 003842          506 NSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-----------------------------------------  543 (792)
Q Consensus       506 ~~l~-~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t-----------------------------------------  543 (792)
                      ..+. +|.+.|+|+.||+||+|||+||.||.|+||.+..                                         
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            3445 8999999999999999999999999999997643                                         


Q ss_pred             -------------------CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEE
Q 003842          544 -------------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD  604 (792)
Q Consensus       544 -------------------~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~  604 (792)
                                         .+++..+.+|.+.|.+|.|+.++ +|++++.|++||+|++.. ..++..|. |...|+||+
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTcVa  416 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTCVA  416 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC-cceeeEEe-cCCeeEEEE
Confidence                               01122345799999999999876 999999999999999997 77888876 999999999


Q ss_pred             EcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC--C--
Q 003842          605 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H--  678 (792)
Q Consensus       605 fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~--h--  678 (792)
                      |+|.++++|++|+-||.||||+|...+++.-.  +.-++.++|.|+|...++|+.+|.+++|+++..+....+.-  |  
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~  496 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK  496 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence            99999999999999999999999988877654  45688999999999999999999999999998876654321  1  


Q ss_pred             ----CCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeecCC--CceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003842          679 ----TKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVFHPTYPSLLVIGCYQSLELW  750 (792)
Q Consensus       679 ----~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~--~~i~si~fspdg~~L~sgs~dg~I~Iw  750 (792)
                          ...|+.+.|.|.. ..|++.+.| .|+|||.+..   ..+..+++..  ..-....|+.||++|++++.|..|+||
T Consensus       497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW  573 (712)
T KOG0283|consen  497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW  573 (712)
T ss_pred             ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence                2279999999743 345556666 9999999665   4444444432  234567889999999999999999999


Q ss_pred             ECC
Q 003842          751 NMS  753 (792)
Q Consensus       751 Dl~  753 (792)
                      ++.
T Consensus       574 ~~~  576 (712)
T KOG0283|consen  574 KND  576 (712)
T ss_pred             eCC
Confidence            973

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=8.4e-29  Score=261.76  Aligned_cols=246  Identities=18%  Similarity=0.312  Sum_probs=216.8

Q ss_pred             CceeEEeccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003842          544 LKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI  622 (792)
Q Consensus       544 ~~~~~~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I  622 (792)
                      .+.+.++.+|...|+++.|.| .+.+|++++.|+.|+||++...+.++++|.+|..+|.+++|+.++..++ +++.|+.|
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~l  282 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRFL  282 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeecceee
Confidence            356778889999999999999 8889999999999999999998999999999999999999999988766 99999999


Q ss_pred             EEEEcCCCeeEEEeeC--CeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003842          623 RYWSINNGSCTRVFKG--GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE  699 (792)
Q Consensus       623 ~iwdl~~~~~~~~~~~--~~~~v~~sp~~-~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~  699 (792)
                      ++||+++|.++..|..  ...++.|.|++ +.+++|+.|+.|+.||+++++.+..+..|-+.|..|.|-++|+++++.++
T Consensus       283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD  362 (503)
T KOG0282|consen  283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD  362 (503)
T ss_pred             eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence            9999999999998864  56889999999 78889999999999999999999999999999999999999999999999


Q ss_pred             C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----EEcccC--CCeEEEEE
Q 003842          700 D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHE--GLIAALAV  772 (792)
Q Consensus       700 d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~----~~~~h~--~~V~sl~f  772 (792)
                      | .++||+.+.+-..+.+..  .+.....+|..+|.++++++=+.|+.|.+|.+...-.+    .+.+|.  +.-..+.|
T Consensus       363 dks~riWe~~~~v~ik~i~~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f  440 (503)
T KOG0282|consen  363 DKSVRIWENRIPVPIKNIAD--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF  440 (503)
T ss_pred             CccEEEEEcCCCccchhhcc--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence            9 999999987643333332  23345678899999999999999999999987654333    566664  45667899


Q ss_pred             eCCCCEEEEEeCCCcEEEeC
Q 003842          773 STETGYVASASHDKFVKLWK  792 (792)
Q Consensus       773 spdg~~LaSgs~DG~I~IWd  792 (792)
                      ||||++|++|+.||.|.+||
T Consensus       441 SpDG~~l~SGdsdG~v~~wd  460 (503)
T KOG0282|consen  441 SPDGRTLCSGDSDGKVNFWD  460 (503)
T ss_pred             cCCCCeEEeecCCccEEEee
Confidence            99999999999999999997

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.7e-27  Score=249.11  Aligned_cols=275  Identities=19%  Similarity=0.289  Sum_probs=238.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR  591 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~  591 (792)
                      .+.|.+++|+|...+=++....-.|.||+..+...++++......|.+++|..||++|++|...|.|+|||+.+ ...++
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iLR  104 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVILR  104 (487)
T ss_pred             cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHHH
Confidence            46799999999554322233356799999999888888888899999999999999999999999999999654 67889


Q ss_pred             EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCC-EEEEEEcCCeEEEEECC
Q 003842          592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLG-RYLAAAAENVVSILDAE  667 (792)
Q Consensus       592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~-~lla~s~dg~I~i~D~~  667 (792)
                      .+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+.+   .+.+.+|+|-.+ .+++|+.||.|++||++
T Consensus       105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR  184 (487)
T KOG0310|consen  105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR  184 (487)
T ss_pred             HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence            99999999999999999999999999999999999999887545544   467788888877 46677889999999999


Q ss_pred             CC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003842          668 TQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS  746 (792)
Q Consensus       668 t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~  746 (792)
                      .. ..+.++. |..+|.++++-|.|..|++++...|+|||+.++.  ..+.....|...|+|+++..++..|++++-|+.
T Consensus       185 ~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~  261 (487)
T KOG0310|consen  185 SLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH  261 (487)
T ss_pred             cCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeecccccc
Confidence            88 5556655 9999999999999999999999999999998764  445555568899999999999999999999999


Q ss_pred             EEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003842          747 LELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL  790 (792)
Q Consensus       747 I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I  790 (792)
                      |++||+.+.+.+.-....++|.+++.+||+..++.|..||.+.+
T Consensus       262 VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  262 VKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             eEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence            99999988888877788899999999999999999999998754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=7.3e-27  Score=243.73  Aligned_cols=274  Identities=24%  Similarity=0.395  Sum_probs=240.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003842          513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT  592 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~  592 (792)
                      ..|+++...+....+++|+.|..+.++|......+.++++|...|+.+.|+++...+++++.|..|+||.... ......
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~~  298 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPTS  298 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCccc
Confidence            4578888888777999999999999999999999999999999999999999999999999999999999987 446667


Q ss_pred             ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC-----CeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003842          593 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAENVVSILDAE  667 (792)
Q Consensus       593 ~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~~~lla~s~dg~I~i~D~~  667 (792)
                      ...|..+|+.+..+|.|++++ +++.|++..+.|++++.++.....     ...+..|+|||-.|.+|..|+.|+|||+.
T Consensus       299 ~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk  377 (506)
T KOG0289|consen  299 SRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK  377 (506)
T ss_pred             cccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence            778999999999999988655 899999999999999998876654     36788999999999999999999999999


Q ss_pred             CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEcCC
Q 003842          668 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ  745 (792)
Q Consensus       668 t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~dg  745 (792)
                      +...+..|.+|.++|..|+|+.+|.||+++++| .|++||++..+.   +..+.. ....+.++.|...|.+|++++.+=
T Consensus       378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n---~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l  454 (506)
T KOG0289|consen  378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN---FKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL  454 (506)
T ss_pred             CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc---cceeeccccccceeEEEcCCCCeEEeeccee
Confidence            999999999999999999999999999999999 799999987643   333332 223699999999999999998877


Q ss_pred             eEEEEECCCCcE--E-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          746 SLELWNMSENKT--M-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       746 ~I~IwDl~~~~~--~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      .|++++-.+...  + .+..|.+..+++.|.....+|+++|.|..++|+
T Consensus       455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence            777777555433  2 566788899999999999999999999999887

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=7.9e-26  Score=258.26  Aligned_cols=247  Identities=15%  Similarity=0.189  Sum_probs=199.7

Q ss_pred             EeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCc-------eeEEecccCCCeE
Q 003842          530 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGY-------SLRTFMGHSASVM  601 (792)
Q Consensus       530 gs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspd-g~~Lasgs~Dg~V~IWdl~s~~~-------~i~~~~~h~~~V~  601 (792)
                      |+.++.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.||+|+|||+.+...       .+..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            667889999999888888899999999999999996 78999999999999999986332       3456788999999


Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC
Q 003842          602 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT  679 (792)
Q Consensus       602 sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~  679 (792)
                      +++|+|++..++++++.|++|+|||++++..+..+.  ..+.++.|++++..+++++.|+.|+|||+++++.+..+.+|.
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~  209 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD  209 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence            999999988888899999999999999988765543  457889999999999999999999999999999999999998


Q ss_pred             CCeEE-----EEEcCCCCEEEEEeCC-----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003842          680 KPIDS-----VCWDPSGELLASVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL  749 (792)
Q Consensus       680 ~~V~s-----v~~spdg~~Las~s~d-----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~I  749 (792)
                      +.+.+     ..|++++.+|++++.+     .|+|||++..........+..+...+......+++.++++|+.|+.|++
T Consensus       210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~  289 (568)
T PTZ00420        210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY  289 (568)
T ss_pred             CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence            76543     2345888888887755     5999999864332333333333344444444556888999999999999


Q ss_pred             EECCCCcEEEE--cccCCCeEEEEEeCCC
Q 003842          750 WNMSENKTMTL--TAHEGLIAALAVSTET  776 (792)
Q Consensus       750 wDl~~~~~~~~--~~h~~~V~sl~fspdg  776 (792)
                      |++..+....+  ..+..++.+++|.|+.
T Consensus       290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEccCCcEEeecccccCCCccceEEcccc
Confidence            99988765433  3466788899999965

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.2e-26  Score=261.96  Aligned_cols=268  Identities=26%  Similarity=0.474  Sum_probs=235.8

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE-eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY  588 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~-l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~  588 (792)
                      .|...|.|..|.  ..++++++.|.+|.+||..++..+.. +.+|.+.|++++|...+.+|++|+.|.+++|||+.+ +.
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-g~  282 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-GE  282 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-Cc
Confidence            367788899998  45899999999999999999999888 999999999999998788999999999999999887 89


Q ss_pred             eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCeEEEEE
Q 003842          589 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILD  665 (792)
Q Consensus       589 ~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~I~i~D  665 (792)
                      +...+.+|...|.++...+   .++++|+.|.+|++|++.++.++..+.++   +.++.+.  ++.+++|+.|+.|.+||
T Consensus       283 C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~  357 (537)
T KOG0274|consen  283 CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD  357 (537)
T ss_pred             EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence            9999999999999999874   46778999999999999999999988753   3444444  88999999999999999


Q ss_pred             CCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003842          666 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY  744 (792)
Q Consensus       666 ~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d  744 (792)
                      +.+++++..+.+|...|.++.+... .++++|+.| .|++||+++..  +|+..+..|...+..+.+  .+++|++++.|
T Consensus       358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD  432 (537)
T KOG0274|consen  358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSAD  432 (537)
T ss_pred             hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccc
Confidence            9999999999999999999988766 899999999 89999998654  788888888888755544  56789999999


Q ss_pred             CeEEEEECCCCcEE-EEcc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          745 QSLELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       745 g~I~IwDl~~~~~~-~~~~-h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +.|++||..+++++ .+.+ |...|.++++.  ...+++++.||.+++||
T Consensus       433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d  480 (537)
T KOG0274|consen  433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD  480 (537)
T ss_pred             ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence            99999999999988 5555 56889988886  45788899999999997

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=1.1e-27  Score=234.19  Aligned_cols=249  Identities=19%  Similarity=0.271  Sum_probs=221.9

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      -+.+|.+|.+.|+..+++.+..+.|+++.|-+.+|||.-+|..+..+. |...|..++|+.|.++|++|+.++.+||||+
T Consensus        51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl  129 (334)
T KOG0278|consen   51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL  129 (334)
T ss_pred             cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence            356789999999999999999999999999999999999999998886 8889999999999999999999999999999


Q ss_pred             CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--eCCeeEEEEecCCCEEEEEEcCCeE
Q 003842          584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVV  661 (792)
Q Consensus       584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~lla~s~dg~I  661 (792)
                      +.+..+...+.+|.+.|..+.|+..+..+| ++..|++||+||.++++.+..+  +.++.++.+++++ .+++.+..+.|
T Consensus       130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG-~ilTia~gssV  207 (334)
T KOG0278|consen  130 NRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG-RILTIAYGSSV  207 (334)
T ss_pred             cCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCC-CEEEEecCcee
Confidence            998888999999999999999998766555 7789999999999999988765  5678899999984 56677777899


Q ss_pred             EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003842          662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV  740 (792)
Q Consensus       662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s  740 (792)
                      .+||..+..+++.++ -...|.+..++|+..++++|++| .++.||+.++.+..+.  .++|.++|.++.|+|+|...++
T Consensus       208 ~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~yAs  284 (334)
T KOG0278|consen  208 KFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGELYAS  284 (334)
T ss_pred             EEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCceeec
Confidence            999999999888776 45679999999999999999999 9999999998543331  4789999999999999999999


Q ss_pred             EEcCCeEEEEECCCCcEE
Q 003842          741 IGCYQSLELWNMSENKTM  758 (792)
Q Consensus       741 gs~dg~I~IwDl~~~~~~  758 (792)
                      |+.||+|+||-+..++..
T Consensus       285 GSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  285 GSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             cCCCceEEEEEecCCCch
Confidence            999999999998766544

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.4e-25  Score=254.88  Aligned_cols=263  Identities=16%  Similarity=0.227  Sum_probs=206.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------cee---EEeccCCCCEEEEEECC-CCCeEEEEeCCCc
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----------KSK---TNLEEHSSLITDVRFSP-SMPRLATSSFDKT  577 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~----------~~~---~~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~  577 (792)
                      ...|....+++|+..+++++.+..+..|+...+          +..   ..+.+|.+.|++++|+| ++.+|++|+.|++
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt   99 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT   99 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence            344556666667666666666666666664433          211   24678999999999999 8889999999999


Q ss_pred             EEEEeCCCCC------ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecC
Q 003842          578 VRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPH  648 (792)
Q Consensus       578 V~IWdl~s~~------~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~  648 (792)
                      |+|||+.+.+      ..+..+.+|...|.+|+|+|++..+|++++.|++|+|||+++++.+..+..   .+.+++|+++
T Consensus       100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd  179 (493)
T PTZ00421        100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD  179 (493)
T ss_pred             EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence            9999997643      356788899999999999999877888999999999999999988877653   5788999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC-eEEEEEcCCCCEEEEEe----CC-eEEEEECCCCCCcceEEEeec-
Q 003842          649 LGRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVS----ED-SVRVWTVGSGSEGECVHELSC-  721 (792)
Q Consensus       649 ~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~-V~sv~~spdg~~Las~s----~d-~I~IwDl~s~~~~~~i~~~~~-  721 (792)
                      +..+++++.|+.|+|||+++++.+..+.+|... +..+.|.+++.+|++++    .| .|++||+++...  .+..... 
T Consensus       180 G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d  257 (493)
T PTZ00421        180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLD  257 (493)
T ss_pred             CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEeccC
Confidence            999999999999999999999999999888765 44678999888777654    24 899999986542  3333322 


Q ss_pred             CCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEE--cccCCCeEEEEEeCCC
Q 003842          722 NGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTL--TAHEGLIAALAVSTET  776 (792)
Q Consensus       722 ~~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~~--~~h~~~V~sl~fspdg  776 (792)
                      ....+..+.|++++.+|++++ .|+.|++||+.+++.+..  ..+...+.+++|.|.-
T Consensus       258 ~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        258 QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence            234566678999999999888 499999999999887633  2455677888888753

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=3e-26  Score=263.42  Aligned_cols=278  Identities=20%  Similarity=0.335  Sum_probs=233.5

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEECCC------------CceeEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 003842          510 ASTSKVICCHFSSDGKLLATGG--HDKKAVLWHTDT------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFD  575 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs--~Dg~I~vWdl~t------------~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D  575 (792)
                      .+...|.+++.+|||..+|+|+  .||.++||+.+.            .+.+.....|.+.|+|+.|++||.+||+|++|
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            3455689999999999999999  999999998642            23445667899999999999999999999999


Q ss_pred             CcEEEEeCCC------C-----------CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC
Q 003842          576 KTVRVWDADN------P-----------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG  638 (792)
Q Consensus       576 g~V~IWdl~s------~-----------~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~  638 (792)
                      +.|.||+...      .           .+.+..+.+|...|.+++|+|++ .++++++.|++|.|||..+.++++++++
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl~~  169 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVLRG  169 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeeeec
Confidence            9999999872      0           13567888999999999999985 4778999999999999999998888876


Q ss_pred             C---eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC------CCeEEEEEcCCCCEEEEEeC----C-eEEE
Q 003842          639 G---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT------KPIDSVCWDPSGELLASVSE----D-SVRV  704 (792)
Q Consensus       639 ~---~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~------~~V~sv~~spdg~~Las~s~----d-~I~I  704 (792)
                      +   +..+.|.|-|.++++-+.|++|+||++.+..+.+.+.++.      ..+..+.|+|||.+|++...    . ++.|
T Consensus       170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I  249 (942)
T KOG0973|consen  170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI  249 (942)
T ss_pred             ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence            4   5678999999999999999999999988877776665532      34788999999999998642    2 7888


Q ss_pred             EECCCCCCcceEEEeecCCCceEEEEEeCC-----CC------------EEEEEEcCCeEEEEECCCCcEEEE--cccCC
Q 003842          705 WTVGSGSEGECVHELSCNGNKFHSCVFHPT-----YP------------SLLVIGCYQSLELWNMSENKTMTL--TAHEG  765 (792)
Q Consensus       705 wDl~s~~~~~~i~~~~~~~~~i~si~fspd-----g~------------~L~sgs~dg~I~IwDl~~~~~~~~--~~h~~  765 (792)
                      .+-.+   ++.-..+.+|..++.+++|+|.     ..            .+++|+.|++|.||.....+++.+  .-...
T Consensus       250 ieR~t---Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~  326 (942)
T KOG0973|consen  250 IERGT---WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK  326 (942)
T ss_pred             EecCC---ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence            88644   3677788899999999999872     11            578899999999999988777733  33467


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          766 LIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       766 ~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      .|.+++|+|||-.|+.||.||+|.++
T Consensus       327 SI~DmsWspdG~~LfacS~DGtV~~i  352 (942)
T KOG0973|consen  327 SIVDMSWSPDGFSLFACSLDGTVALI  352 (942)
T ss_pred             ceeeeeEcCCCCeEEEEecCCeEEEE
Confidence            89999999999999999999999875

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.5e-26  Score=251.53  Aligned_cols=266  Identities=22%  Similarity=0.426  Sum_probs=227.9

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecc-
Q 003842          517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-  595 (792)
Q Consensus       517 ~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~-  595 (792)
                      -+.|+ ..+.||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+ .+.++.+.+ 
T Consensus       182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-~k~~~~~~~~  258 (484)
T KOG0305|consen  182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-QKKTRTLRGS  258 (484)
T ss_pred             Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh-ccccccccCC
Confidence            36677 344677764 55899999999987777776689999999999999999999999999999987 566777777 


Q ss_pred             cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE----eeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003842          596 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC  671 (792)
Q Consensus       596 h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~  671 (792)
                      |...|-+++|.   ..++.+|+.|+.|.++|++.......    +...+..+.|++++.+++.|+.|+.+.|||.....+
T Consensus       259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p  335 (484)
T KOG0305|consen  259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP  335 (484)
T ss_pred             cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence            99999999998   44788999999999999998765443    334566788999999999999999999999998899


Q ss_pred             EEEecCCCCCeEEEEEcC-CCCEEEEEe--CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc--CC
Q 003842          672 RLSLQGHTKPIDSVCWDP-SGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC--YQ  745 (792)
Q Consensus       672 ~~~l~~h~~~V~sv~~sp-dg~~Las~s--~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~--dg  745 (792)
                      +..+..|...|.+++|+| ...+||+|+  .| +|++||+.++   ..+..+. ....|.++.|++..+.|+++..  ++
T Consensus       336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n  411 (484)
T KOG0305|consen  336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN  411 (484)
T ss_pred             cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence            999999999999999999 556888765  45 9999999877   4454443 4678999999999988877654  46


Q ss_pred             eEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          746 SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       746 ~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .|.||++.+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus       412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN  459 (484)
T ss_pred             cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence            8999999998777 7889999999999999999999999999999996

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=4.3e-26  Score=228.82  Aligned_cols=270  Identities=16%  Similarity=0.262  Sum_probs=221.5

Q ss_pred             cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC-Ccee-EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          510 ASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       510 ~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t-~~~~-~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      .-.+.|.+|+||| ...+|++|+.||+|++|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            3467799999999 666777999999999999986 3333 345579999999999999999999999999999999983


Q ss_pred             CceeEEecccCCCeEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD  665 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~-~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D  665 (792)
                        -+..+..|.++|.++.|-+... .+|++|+.|.+|++||++....+..+.-+..+.+.......++++..+..|.+|+
T Consensus       105 --Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn  182 (347)
T KOG0647|consen  105 --QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN  182 (347)
T ss_pred             --CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence              5677788999999999976543 4788999999999999999999998888888877777778899999999999999


Q ss_pred             CCCCeEEEEe-c-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC---------CceEEEEEeC
Q 003842          666 AETQACRLSL-Q-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---------NKFHSCVFHP  733 (792)
Q Consensus       666 ~~t~~~~~~l-~-~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~---------~~i~si~fsp  733 (792)
                      ++++...+.. . .-.-.++||+...|....+.|+-. .+.|..+..+.. +.-..+++|.         ..|.+++|+|
T Consensus       183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP  261 (347)
T KOG0647|consen  183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHP  261 (347)
T ss_pred             cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeec
Confidence            9876433221 1 123458899988888877878766 888888876533 3334455554         2478899999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 003842          734 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA  782 (792)
Q Consensus       734 dg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSg  782 (792)
                      ....|++++.||++.+||-.....+ ....|..+|+|.+|+.+|.++|-+
T Consensus       262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence            9999999999999999998877665 667899999999999999988754

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1e-25  Score=238.97  Aligned_cols=274  Identities=22%  Similarity=0.282  Sum_probs=224.9

Q ss_pred             CcceEEEEeCCCee--e-ecCCCeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003842          429 SKPLMMFGTDGAGT--L-TSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA  505 (792)
Q Consensus       429 ~k~~l~~s~Dg~~~--~-ss~s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~  505 (792)
                      +...++|||...+-  + ++....||+..+...+..+.+|                                        
T Consensus        28 ~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srF----------------------------------------   67 (487)
T KOG0310|consen   28 SVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRF----------------------------------------   67 (487)
T ss_pred             cceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhh----------------------------------------
Confidence            34567888855442  2 2333378888877666555544                                        


Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCC
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspd-g~~Lasgs~Dg~V~IWdl~  584 (792)
                            .+.|++++|-.||++||+|...|.|+|||+.+...+..+.+|..+|..+.|+|. +..|++|+.|+.+++||+.
T Consensus        68 ------k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s  141 (487)
T KOG0310|consen   68 ------KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS  141 (487)
T ss_pred             ------ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence                  334899999999999999999999999998877778889999999999999995 5578889999999999999


Q ss_pred             CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeEEEee--CCeeEEEEecCCCEEEEEEcCCeE
Q 003842          585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFK--GGTAQMRFQPHLGRYLAAAAENVV  661 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~--~~~~~v~~sp~~~~lla~s~dg~I  661 (792)
                      + ......+.+|++.|.|.+|+|-.++++++|+.||.|++||++.. ..+..++  .++..+.+.|.+..+++ +..+.|
T Consensus       142 ~-a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ias-AgGn~v  219 (487)
T KOG0310|consen  142 T-AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIAS-AGGNSV  219 (487)
T ss_pred             C-cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEE-cCCCeE
Confidence            8 55567889999999999999999999999999999999999987 5555554  46788899988666554 455789


Q ss_pred             EEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003842          662 SILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL  739 (792)
Q Consensus       662 ~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~  739 (792)
                      +|||+.++ +.+..+..|...|+|+++..++..|++++-| .|++||+.+.   +.++.+. -.++|.+|+++|++..++
T Consensus       220 kVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~-~~~pvLsiavs~dd~t~v  295 (487)
T KOG0310|consen  220 KVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWK-YPGPVLSIAVSPDDQTVV  295 (487)
T ss_pred             EEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeee-cccceeeEEecCCCceEE
Confidence            99999965 5556666699999999999999999999999 9999997554   6666655 357899999999999999


Q ss_pred             EEEcCCeEEEEECCC
Q 003842          740 VIGCYQSLELWNMSE  754 (792)
Q Consensus       740 sgs~dg~I~IwDl~~  754 (792)
                      +|..+|.+.+-+...
T Consensus       296 iGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  296 IGMSNGLVSIRRREV  310 (487)
T ss_pred             Eecccceeeeehhhc
Confidence            999999887775433

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.8e-26  Score=229.46  Aligned_cols=287  Identities=17%  Similarity=0.325  Sum_probs=242.8

Q ss_pred             ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003842          501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV  580 (792)
Q Consensus       501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I  580 (792)
                      .+..++.+.||.+.|+.++.......+.+++.|.+.+||.+++++++.++.+|.+.|++|.|++.+.++++++.|++..|
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI  216 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence            45678889999999999999988889999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCC------CC---------------------------------CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc
Q 003842          581 WDAD------NP---------------------------------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE  621 (792)
Q Consensus       581 Wdl~------s~---------------------------------~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~  621 (792)
                      |...      .+                                 ..++..+.+|.+.|.+..|...+..++ +++.|.+
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v-TaSWDRT  295 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV-TASWDRT  295 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceee-eeecccc
Confidence            9621      00                                 023567789999999999998877555 9999999


Q ss_pred             EEEEEcCCCeeEEEeeCCe---eEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 003842          622 IRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASV  697 (792)
Q Consensus       622 I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~lla~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~  697 (792)
                      ..+||+++++.+..+.++.   ..++-+|....+++.+.|.+.++||++.. ..+..|.+|...|+++.|..+ ..++++
T Consensus       296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSg  374 (481)
T KOG0300|consen  296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSG  374 (481)
T ss_pred             ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-Cceeec
Confidence            9999999999999887754   45677888888888899999999999865 567789999999999999765 457889


Q ss_pred             eCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-----EcccCCCeEEEE
Q 003842          698 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-----LTAHEGLIAALA  771 (792)
Q Consensus       698 s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-----~~~h~~~V~sl~  771 (792)
                      ++| +|+|||+++...  .+..+. ...++..++++..++.|+.-..+..|++||+...++..     -.+|...|+|++
T Consensus       375 SDDrTvKvWdLrNMRs--plATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A  451 (481)
T KOG0300|consen  375 SDDRTVKVWDLRNMRS--PLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA  451 (481)
T ss_pred             CCCceEEEeeeccccC--cceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence            999 999999987643  333333 35678889999888888888888899999999887653     348999999999


Q ss_pred             EeCCC--CEEEEEeCCCcEEEeC
Q 003842          772 VSTET--GYVASASHDKFVKLWK  792 (792)
Q Consensus       772 fspdg--~~LaSgs~DG~I~IWd  792 (792)
                      |..+-  .-|++||-|..+.-|+
T Consensus       452 W~eehp~cnLftcGFDR~v~gW~  474 (481)
T KOG0300|consen  452 WLEEHPACNLFTCGFDRMVAGWK  474 (481)
T ss_pred             ccccCcccccccccccceeeeeE
Confidence            97653  2478999999998885

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=1.3e-25  Score=245.12  Aligned_cols=346  Identities=13%  Similarity=0.194  Sum_probs=268.6

Q ss_pred             CCCeeEeCCCcchhhcccccccC-------------------CCCCCceeeeccCCCC----CCCCCCCcceeccCCcce
Q 003842          446 PSNQLWDDKDLELRADMDRLVED-------------------GSLDDNVESFLSHDDT----DPRDAGGRGMDVSQGFSF  502 (792)
Q Consensus       446 ~s~~lWD~~tg~~~~~~~~~~~~-------------------g~~d~~v~~~l~~d~~----~~~d~~~~~~d~~~~~~~  502 (792)
                      +..+||+.++.++..++.+...-                   +.+.+.|.+.|..-..    ...|...-+||+.+....
T Consensus       280 g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kv  359 (1080)
T KOG1408|consen  280 GMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKV  359 (1080)
T ss_pred             ceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccc
Confidence            34488999888777776544332                   2333444444432221    235667789999998888


Q ss_pred             eeeeeeecCCCCeEEEEEcCC-----------CCEEEEEeCCCeEEEEECCCCceeEEe---------------------
Q 003842          503 KEANSVRASTSKVICCHFSSD-----------GKLLATGGHDKKAVLWHTDTLKSKTNL---------------------  550 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspd-----------g~~Lasgs~Dg~I~vWdl~t~~~~~~l---------------------  550 (792)
                      .....+-.|...|+.+.--|.           ...+++++.|++|++||++.+..-..+                     
T Consensus       360 gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~  439 (1080)
T KOG1408|consen  360 GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQI  439 (1080)
T ss_pred             cceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhh
Confidence            888888999999999887662           136889999999999998752111110                     


Q ss_pred             ----------------ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCC--CCeE
Q 003842          551 ----------------EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--KDDL  612 (792)
Q Consensus       551 ----------------~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd--~~~l  612 (792)
                                      .+....|.+|+.+|++.+||+|..-|+++|||+.+ ......+..|...|.|+.|+..  +..|
T Consensus       440 ~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesEilcLeyS~p~~~~kL  518 (1080)
T KOG1408|consen  440 MHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESEILCLEYSFPVLTNKL  518 (1080)
T ss_pred             hhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheecccceeEEEeecCchhhhHh
Confidence                            01345799999999999999999999999999987 5666778899999999999743  4568


Q ss_pred             EEEEeCCCcEEEEEcCCC-eeEEEeeC---CeeEEEEecCC--CEEEEEEcCCeEEEEECCCCeEEEEecC-----CCCC
Q 003842          613 ICSCDGDGEIRYWSINNG-SCTRVFKG---GTAQMRFQPHL--GRYLAAAAENVVSILDAETQACRLSLQG-----HTKP  681 (792)
Q Consensus       613 l~sgs~Dg~I~iwdl~~~-~~~~~~~~---~~~~v~~sp~~--~~lla~s~dg~I~i~D~~t~~~~~~l~~-----h~~~  681 (792)
                      |++++.|..|.|||+... ..+.++.+   .++.+.|...+  ...++++.|..|.+--.........+..     ....
T Consensus       519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktT  598 (1080)
T KOG1408|consen  519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTT  598 (1080)
T ss_pred             hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccce
Confidence            999999999999998754 33344443   56778888777  5678888888776544332211111211     2345


Q ss_pred             eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-E
Q 003842          682 IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-T  759 (792)
Q Consensus       682 V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~  759 (792)
                      +..++..|..+++++++.| .|+|||+.+++..+.++.-..+++....+...|.|.||++.+.|.++.|||+.+++++ .
T Consensus       599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~  678 (1080)
T KOG1408|consen  599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ  678 (1080)
T ss_pred             EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence            8899999999999999999 9999999998666666666667788999999999999999999999999999999999 7


Q ss_pred             EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          760 LTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       760 ~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ..+|...|+.+.|.+|.+.|++++.||.|.||+
T Consensus       679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~  711 (1080)
T KOG1408|consen  679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK  711 (1080)
T ss_pred             hcCcchheeeeeecccchhheeecCCceEEEEE
Confidence            899999999999999999999999999999995

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=8.5e-26  Score=254.02  Aligned_cols=275  Identities=18%  Similarity=0.276  Sum_probs=210.0

Q ss_pred             CcceEEEEeCCCeeeecCCC---eeEeCCCcchhhccccccc---------CC------CCCCceeeeccCCCCCCCCCC
Q 003842          429 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVE---------DG------SLDDNVESFLSHDDTDPRDAG  490 (792)
Q Consensus       429 ~k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~---------~g------~~d~~v~~~l~~d~~~~~d~~  490 (792)
                      ++-.|+||+||+|+++++.+   +||.+...+. ..++....         .+      .....+...............
T Consensus       269 aIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~  347 (712)
T KOG0283|consen  269 AIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPC  347 (712)
T ss_pred             cEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCccccccccccccccccccccCCcc
Confidence            45689999999999999888   8899887544 11111000         00      000011111111112222222


Q ss_pred             CcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECC-CCCeE
Q 003842          491 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRL  569 (792)
Q Consensus       491 ~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp-dg~~L  569 (792)
                      ...-+....+.-+++..+.||.+.|.+|.||.++ +|++++.|++|+||++...+++..|. |.+.|+||+|+| |.+||
T Consensus       348 ~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryF  425 (712)
T KOG0283|consen  348 VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYF  425 (712)
T ss_pred             ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcE
Confidence            3444444567778899999999999999999887 89999999999999999999999886 999999999999 78899


Q ss_pred             EEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----------C-
Q 003842          570 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------G-  638 (792)
Q Consensus       570 asgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----------~-  638 (792)
                      ++|+-||.||||++..  ..+..+.....-|++++|.|+|.. +++|+.+|.+++|++...+....+.          + 
T Consensus       426 iSGSLD~KvRiWsI~d--~~Vv~W~Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~  502 (712)
T KOG0283|consen  426 ISGSLDGKVRLWSISD--KKVVDWNDLRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK  502 (712)
T ss_pred             eecccccceEEeecCc--CeeEeehhhhhhheeEEeccCCce-EEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence            9999999999999985  455556666789999999999875 5599999999999999877654321          1 


Q ss_pred             CeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 003842          639 GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVGS  709 (792)
Q Consensus       639 ~~~~v~~sp~~-~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~--~V~sv~~spdg~~Las~s~d-~I~IwDl~s  709 (792)
                      .++.+.|.|.. ..+++++.|..|+|||.++..++..|+++..  .-....|+.||++|+++++| .|+||++..
T Consensus       503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            36677777654 4699999999999999999999988887432  23567899999999999999 999999844

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=1.7e-25  Score=257.21  Aligned_cols=299  Identities=20%  Similarity=0.337  Sum_probs=238.9

Q ss_pred             ccCCCCCCCCCcceEEEEeCCCeeeecCCC-----eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcc
Q 003842          419 MPALPHSGTTSKPLMMFGTDGAGTLTSPSN-----QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRG  493 (792)
Q Consensus       419 ~p~~p~~~~~~k~~l~~s~Dg~~~~ss~s~-----~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~  493 (792)
                      .+.+.|.... .-.+.++|||..+++++..     .||+...--  .+...                             
T Consensus         6 p~wv~H~~~~-IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl--~~~~~-----------------------------   53 (942)
T KOG0973|consen    6 PTWVNHNEKS-IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVL--DEKEE-----------------------------   53 (942)
T ss_pred             ccccccCCee-EEEEEecCCceeEecCCccccccceeecccccc--chhhh-----------------------------
Confidence            3445555322 3367889999999887733     588754311  00000                             


Q ss_pred             eeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC------------------CCceeEEeccCCC
Q 003842          494 MDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD------------------TLKSKTNLEEHSS  555 (792)
Q Consensus       494 ~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~------------------t~~~~~~l~~h~~  555 (792)
                      ++   ..--+.+.....|.+.|+|+.|++||++||+|++|+.|.||+..                  ..+.+..+.+|..
T Consensus        54 ~~---~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~  130 (942)
T KOG0973|consen   54 KN---ENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS  130 (942)
T ss_pred             hh---cccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCC
Confidence            00   00124567788999999999999999999999999999999876                  2346778899999


Q ss_pred             CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE
Q 003842          556 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV  635 (792)
Q Consensus       556 ~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~  635 (792)
                      .|.+++|+|++.+||+++.|++|.|||..+. +.++.+.+|.+.|..+.|.|-|. +||+-+.|++|+||++.+..+.+.
T Consensus       131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~  208 (942)
T KOG0973|consen  131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKS  208 (942)
T ss_pred             ccceeccCCCccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEe
Confidence            9999999999999999999999999999985 88999999999999999999986 667999999999999887666666


Q ss_pred             eeC---------CeeEEEEecCCCEEEEEEc----CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC------------
Q 003842          636 FKG---------GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS------------  690 (792)
Q Consensus       636 ~~~---------~~~~v~~sp~~~~lla~s~----dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd------------  690 (792)
                      +..         ....+.|+|+|.+|++...    ...+.|.+-.+.+.-..|-+|.+++.++.|+|.            
T Consensus       209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~  288 (942)
T KOG0973|consen  209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST  288 (942)
T ss_pred             eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence            543         3455789999999988765    348999999999999999999999999999981            


Q ss_pred             -CC----EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003842          691 -GE----LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       691 -g~----~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~  756 (792)
                       .+    .+|+|+.| +|.||.....+....++.  .....|..++|+|||-.|++++.||+|.++.+++.+
T Consensus       289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~--lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN--LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             CCCcceEEEEEecCCccEEEEecCCCCchhhhhh--hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence             11    67888999 999999866543333333  345679999999999999999999999999997653

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=7.7e-26  Score=221.99  Aligned_cols=250  Identities=20%  Similarity=0.329  Sum_probs=206.5

Q ss_pred             CcceeeeeeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECC-CCceeEEeccCCCCEEEEEECC-CCCeEEEEeCC
Q 003842          499 GFSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFD  575 (792)
Q Consensus       499 ~~~~~~~~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~-t~~~~~~l~~h~~~V~~i~fsp-dg~~Lasgs~D  575 (792)
                      ...+.+...+.. .+.+..++|+++ .+.+++++.||+++|||+. ...++..+++|...|.++.|++ ++..+++++.|
T Consensus        48 ~~gi~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD  126 (311)
T KOG0277|consen   48 PKGIQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD  126 (311)
T ss_pred             CCCeEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccC
Confidence            334444444433 456999999995 4588889999999999964 3467888999999999999998 45578889999


Q ss_pred             CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEE
Q 003842          576 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRY  652 (792)
Q Consensus       576 g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~l  652 (792)
                      ++|++|+... ...+.++.+|...|....|+|...++|++++.|+++++||++.......+.   ..+.++.|+....++
T Consensus       127 ~TiKLW~~~r-~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~v  205 (311)
T KOG0277|consen  127 GTIKLWDPNR-PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNV  205 (311)
T ss_pred             CceEeecCCC-CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcE
Confidence            9999999987 778899999999999999999999999999999999999998643333343   356778888766654


Q ss_pred             -EEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEE
Q 003842          653 -LAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS  728 (792)
Q Consensus       653 -la~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~s  728 (792)
                       ++++.|+.|++||+++. .++..+.+|.-.|+.|+|+|.. .+|++++.| +++|||.....  .++.+...|..-+..
T Consensus       206 l~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g  283 (311)
T KOG0277|consen  206 LATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCG  283 (311)
T ss_pred             EEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEec
Confidence             55667999999999986 5788899999999999999954 589999999 99999997543  456666778888888


Q ss_pred             EEEeC-CCCEEEEEEcCCeEEEEEC
Q 003842          729 CVFHP-TYPSLLVIGCYQSLELWNM  752 (792)
Q Consensus       729 i~fsp-dg~~L~sgs~dg~I~IwDl  752 (792)
                      +.|++ +..+++.++.|+.++||+.
T Consensus       284 ~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  284 LDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cccccccCceeeecccccceeeecc
Confidence            99987 5678999999999999984

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=1.3e-24  Score=242.28  Aligned_cols=335  Identities=19%  Similarity=0.301  Sum_probs=260.7

Q ss_pred             CeeEeCCCcchhhcccccccCCCCCCceeeeccCC-----CCCCCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcC
Q 003842          448 NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD-----DTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS  522 (792)
Q Consensus       448 ~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d-----~~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafsp  522 (792)
                      -.|||+++++.+..+.++..      .|.+.-...     ..+..++.+.+.++..+   +.+.+|+-.-+.|+.++|.-
T Consensus       184 lql~Nvrt~K~v~~f~~~~s------~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d---kil~sFk~d~g~VtslSFrt  254 (910)
T KOG1539|consen  184 LQLWNVRTGKVVYTFQEFFS------RITAIEQSPALDVVAIGLENGTVIIFNLKFD---KILMSFKQDWGRVTSLSFRT  254 (910)
T ss_pred             EEEEEeccCcEEEEeccccc------ceeEeccCCcceEEEEeccCceEEEEEcccC---cEEEEEEccccceeEEEecc
Confidence            37899999998887776542      222221111     12234444444544443   35566665579999999999


Q ss_pred             CCC-EEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC---ceeEEecccC
Q 003842          523 DGK-LLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG---YSLRTFMGHS  597 (792)
Q Consensus       523 dg~-~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~---~~i~~~~~h~  597 (792)
                      ||+ .+|+|+..|.+.+||++..+.+..+. .|.+.|..+.|.+....|++++.|..+++|-.+++.   ..++...+|.
T Consensus       255 DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs  334 (910)
T KOG1539|consen  255 DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS  334 (910)
T ss_pred             CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCC
Confidence            998 56677777999999999988887776 798999999999999999999999999998776432   4556667888


Q ss_pred             CCeEEEEEcCCCCeEEEEEeCCCcEEEEEc--------------------------------------------------
Q 003842          598 ASVMSLDFHPNKDDLICSCDGDGEIRYWSI--------------------------------------------------  627 (792)
Q Consensus       598 ~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl--------------------------------------------------  627 (792)
                      .+..||.|.....+.+.+++.|++++.+++                                                  
T Consensus       335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv  414 (910)
T KOG1539|consen  335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV  414 (910)
T ss_pred             CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence            888888888555555667777776655553                                                  


Q ss_pred             ---------------CCCee-EEEe--------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe---cCCCC
Q 003842          628 ---------------NNGSC-TRVF--------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTK  680 (792)
Q Consensus       628 ---------------~~~~~-~~~~--------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l---~~h~~  680 (792)
                                     ++... ...+        ...+.+++.++.|+..+.|.+.|.|.+|++.++.....+   ..|.+
T Consensus       415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~  494 (910)
T KOG1539|consen  415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG  494 (910)
T ss_pred             eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC
Confidence                           22111 0111        123566888889999999999999999999999988888   47999


Q ss_pred             CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC--------------------------------------cceEEEeec
Q 003842          681 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSE--------------------------------------GECVHELSC  721 (792)
Q Consensus       681 ~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~--------------------------------------~~~i~~~~~  721 (792)
                      +|+.++.+.-++.+++++.+ .+++||+.....                                      .+.++.+.+
T Consensus       495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g  574 (910)
T KOG1539|consen  495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG  574 (910)
T ss_pred             ceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc
Confidence            99999999999989988888 999999876420                                      112234667


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC-CcEEEe
Q 003842          722 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD-KFVKLW  791 (792)
Q Consensus       722 ~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~D-G~I~IW  791 (792)
                      |.+.|+.++|||||++|++++.|++|++||+.++.++....-+.+++++.|+|+|.+|||+..| .-|++|
T Consensus       575 h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  575 HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW  645 (910)
T ss_pred             cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence            8999999999999999999999999999999999999888888999999999999999999998 679999

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.6e-25  Score=244.65  Aligned_cols=292  Identities=19%  Similarity=0.291  Sum_probs=241.1

Q ss_pred             CcCCCCCceeccCCCCCCCCCcceEEEEeCCCeeeecC-CCeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCC
Q 003842          409 STHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSP-SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPR  487 (792)
Q Consensus       409 st~tp~~~~~~p~~p~~~~~~k~~l~~s~Dg~~~~ss~-s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~  487 (792)
                      -..+|.+++.+|.+..+-.  ..++.||..+...++.+ ...||+..+++...                           
T Consensus       161 ~~~~p~rvLDaP~l~dDfY--~nlldWss~n~laValg~~vylW~~~s~~v~~---------------------------  211 (484)
T KOG0305|consen  161 IPQTPYRVLDAPGLQDDFY--LNLLDWSSANVLAVALGQSVYLWSASSGSVTE---------------------------  211 (484)
T ss_pred             ccCChhhhccCCcccccHh--hhHhhcccCCeEEEEecceEEEEecCCCceEE---------------------------
Confidence            4567888888887764432  34788887777766655 34788887765211                           


Q ss_pred             CCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-CCCCEEEEEECCCC
Q 003842          488 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSM  566 (792)
Q Consensus       488 d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-h~~~V~~i~fspdg  566 (792)
                                       +..  .+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+.++.+ |...|-+++|.  +
T Consensus       212 -----------------l~~--~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~  270 (484)
T KOG0305|consen  212 -----------------LCS--FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--S  270 (484)
T ss_pred             -----------------eEe--cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--C
Confidence                             111  1266799999999999999999999999999999999999998 99999999998  6


Q ss_pred             CeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---eCCeeEE
Q 003842          567 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQM  643 (792)
Q Consensus       567 ~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v  643 (792)
                      ..+.+|+.|+.|.++|++.....+.++.+|...|..+.|++|+. ++++|+.|+.|.|||.........+   ...+..+
T Consensus       271 ~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~  349 (484)
T KOG0305|consen  271 SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKAL  349 (484)
T ss_pred             ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEe
Confidence            68999999999999999986655566889999999999999975 6779999999999999666655544   4567889


Q ss_pred             EEecCCCEEEEEEc---CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC--C-eEEEEECCCCCCcceEE
Q 003842          644 RFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGECVH  717 (792)
Q Consensus       644 ~~sp~~~~lla~s~---dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~--d-~I~IwDl~s~~~~~~i~  717 (792)
                      +|+|....+++.+.   |+.|++||..+++.+..+. ....|.+|.|++..+-|+++..  + .|.||++.+.   +.+.
T Consensus       350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~  425 (484)
T KOG0305|consen  350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVA  425 (484)
T ss_pred             eeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceee
Confidence            99998877666443   8999999999999888776 4577999999998875655432  2 8999999774   7888


Q ss_pred             EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003842          718 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN  755 (792)
Q Consensus       718 ~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~  755 (792)
                      .+.+|...|..++++|||..|++|+.|.++++|++-+.
T Consensus       426 ~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  426 ELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            99999999999999999999999999999999998764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.94  E-value=2.7e-25  Score=228.99  Aligned_cols=261  Identities=21%  Similarity=0.349  Sum_probs=220.8

Q ss_pred             CCCCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCC---CEEEEEeCCCeEEEEECCCCcee----EEeccCCCC
Q 003842          484 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG---KLLATGGHDKKAVLWHTDTLKSK----TNLEEHSSL  556 (792)
Q Consensus       484 ~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg---~~Lasgs~Dg~I~vWdl~t~~~~----~~l~~h~~~  556 (792)
                      ++..|+..++|+...    +..+.+.||.++|.+++|....   ..|++++.|.++++|.++.++.+    ....+|...
T Consensus       120 tgsYDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~  195 (423)
T KOG0313|consen  120 TGSYDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRS  195 (423)
T ss_pred             EeecCCeeEEEecCC----ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccc
Confidence            345677788887654    5788899999999988886533   36999999999999998876543    334599999


Q ss_pred             EEEEEECCCCCeEEEEeCCCcEEEEeCCCC------------------------CceeEEecccCCCeEEEEEcCCCCeE
Q 003842          557 ITDVRFSPSMPRLATSSFDKTVRVWDADNP------------------------GYSLRTFMGHSASVMSLDFHPNKDDL  612 (792)
Q Consensus       557 V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~------------------------~~~i~~~~~h~~~V~sl~fspd~~~l  612 (792)
                      |-+|+..+++..+++|+.|.+|.||+..+.                        +.++.++.+|..+|.++.|++  ...
T Consensus       196 V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v  273 (423)
T KOG0313|consen  196 VDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATV  273 (423)
T ss_pred             eeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCc
Confidence            999999999999999999999999994311                        234677889999999999998  346


Q ss_pred             EEEEeCCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEcCCeEEEEECCCC---eEEEEecCCCCCeEEEEE
Q 003842          613 ICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCW  687 (792)
Q Consensus       613 l~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~---~~~~~l~~h~~~V~sv~~  687 (792)
                      +++++.|.+|+.||+.++.++..+.+  ...++.+++....+++|+.|..|++||.+++   .+...|.+|...|.++.|
T Consensus       274 ~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkw  353 (423)
T KOG0313|consen  274 IYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKW  353 (423)
T ss_pred             eEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheec
Confidence            78999999999999999998877654  5688999999999999999999999999986   456789999999999999


Q ss_pred             cCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003842          688 DPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       688 spdg~-~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~  753 (792)
                      +|... .|++++.| ++++||+++..  ..+..+..|..+|.++.|.. +.+|++|+.|.+|+|+...
T Consensus       354 sp~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  354 SPTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CCCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence            99665 67788888 99999998752  48889999999999999974 5579999999999998753

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.3e-25  Score=222.79  Aligned_cols=265  Identities=18%  Similarity=0.306  Sum_probs=221.6

Q ss_pred             CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC--eEEEEeCCC
Q 003842          499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDK  576 (792)
Q Consensus       499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~--~Lasgs~Dg  576 (792)
                      .+.+..+..+..|.+.|+|+|.+  +.|+|+|+.|-+|+|||+.+......+-.|.+.|+++.|.++-.  .|++|+.||
T Consensus        30 ~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG  107 (362)
T KOG0294|consen   30 KPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG  107 (362)
T ss_pred             ceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence            45667788899999999999985  77999999999999999999999999999999999999999765  899999999


Q ss_pred             cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--eCCeeEEEEecCCCEEEE
Q 003842          577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLA  654 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~lla  654 (792)
                      .|.+|+... ..++.++++|.+.|+.|+++|.++ |.++.+.|+.++.||+-+|+.-...  +.....+.|+|.|.++++
T Consensus       108 ~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  108 HIIIWRVGS-WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV  185 (362)
T ss_pred             cEEEEEcCC-eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence            999999987 688999999999999999999976 6668888999999999998865544  455666999999888877


Q ss_pred             EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEE--
Q 003842          655 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF--  731 (792)
Q Consensus       655 ~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~f--  731 (792)
                      +.. ..|-||.+++..+...+. ....+.|+.|. ++.+|++|.++ .|.+||..+.   .+...+..|...|..+.+  
T Consensus       186 ~~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~  259 (362)
T KOG0294|consen  186 SGR-NKIDIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYT  259 (362)
T ss_pred             Eec-cEEEEEecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCC---ccceeeecchhheeeeEEEe
Confidence            665 567888888776655554 23557788775 45667777777 9999999764   788899999999999984  


Q ss_pred             eCCCCEEEEEEcCCeEEEEECCCC-----cEEEEcccCCCeEEEEEe
Q 003842          732 HPTYPSLLVIGCYQSLELWNMSEN-----KTMTLTAHEGLIAALAVS  773 (792)
Q Consensus       732 spdg~~L~sgs~dg~I~IwDl~~~-----~~~~~~~h~~~V~sl~fs  773 (792)
                      .|++.+|+++++||.|+|||++..     +.+........++|+...
T Consensus       260 ~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~  306 (362)
T KOG0294|consen  260 NPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK  306 (362)
T ss_pred             cCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence            457889999999999999999876     344444556677777654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.7e-26  Score=249.67  Aligned_cols=268  Identities=22%  Similarity=0.385  Sum_probs=230.0

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCc------eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC-ceeEEec
Q 003842          522 SDGKLLATGGHDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFM  594 (792)
Q Consensus       522 pdg~~Lasgs~Dg~I~vWdl~t~~------~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~-~~i~~~~  594 (792)
                      |.++||++||.||.|++|++....      ....++.|.+.|++++...+++.|++++.|-+|++|+..... .++.++.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            467789999999999999986322      466788999999999999999999999999999999998754 7788899


Q ss_pred             ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee--EEEe------------eCCeeEEEEecCCCEEEEEEcCCe
Q 003842          595 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--TRVF------------KGGTAQMRFQPHLGRYLAAAAENV  660 (792)
Q Consensus       595 ~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~--~~~~------------~~~~~~v~~sp~~~~lla~s~dg~  660 (792)
                      .|.+.|.||++....+.++++|+-|+.|++||++++..  +..+            +..+.+++.++.+..++.|+.++.
T Consensus       115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~  194 (735)
T KOG0308|consen  115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD  194 (735)
T ss_pred             cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence            99999999999555578999999999999999998732  2222            234667888888878888999999


Q ss_pred             EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003842          661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL  739 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~  739 (792)
                      |++||.++.+.+..+.+|...|.++..++||+.+++++.| +|++||+.-.   +|+.++..|...++++..+|+-.+++
T Consensus       195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~sf~~vY  271 (735)
T KOG0308|consen  195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSPSFTHVY  271 (735)
T ss_pred             eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCCCcceEE
Confidence            9999999999999999999999999999999999999999 9999999654   89999999999999999999999999


Q ss_pred             EEEcCCeEEEEECCCC-cEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          740 VIGCYQSLELWNMSEN-KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       740 sgs~dg~I~IwDl~~~-~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +|+.||.|+.=|+++. ++..+...+.+|..+..+.+..-+-++..|+.|+-|.
T Consensus       272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~  325 (735)
T KOG0308|consen  272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK  325 (735)
T ss_pred             ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence            9999999999999984 3445556667777777765444445677888898884

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=3.3e-24  Score=243.81  Aligned_cols=224  Identities=17%  Similarity=0.272  Sum_probs=181.3

Q ss_pred             eeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------ceeEEeccCCCCEEEEEECCCC-CeEEEEeCCCc
Q 003842          507 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKT  577 (792)
Q Consensus       507 ~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~-------~~~~~l~~h~~~V~~i~fspdg-~~Lasgs~Dg~  577 (792)
                      .+.+|.+.|++++|+| ++++||+|+.|++|+|||+.++       +.+..+.+|...|.+|+|+|++ .+|++++.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4789999999999999 8899999999999999999764       3567788999999999999975 69999999999


Q ss_pred             EEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe----eEEEEecCCCEEE
Q 003842          578 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----AQMRFQPHLGRYL  653 (792)
Q Consensus       578 V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~~v~~sp~~~~ll  653 (792)
                      |+|||+++ +..+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+..+.    ..+.|.++++.++
T Consensus       150 VrIWDl~t-g~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv  227 (493)
T PTZ00421        150 VNVWDVER-GKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII  227 (493)
T ss_pred             EEEEECCC-CeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence            99999997 667788889999999999999975 66799999999999999999887776442    3577888888888


Q ss_pred             EEEc----CCeEEEEECCCCe-EEEEecC-CCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCCCcceEEEeec-CCC
Q 003842          654 AAAA----ENVVSILDAETQA-CRLSLQG-HTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHELSC-NGN  724 (792)
Q Consensus       654 a~s~----dg~I~i~D~~t~~-~~~~l~~-h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s~~~~~~i~~~~~-~~~  724 (792)
                      +++.    |+.|++||+++.. ++..+.. +...+....|++++.+|++++. | .|++||+.++.   .+..... +..
T Consensus       228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~~  304 (493)
T PTZ00421        228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSVE  304 (493)
T ss_pred             EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCCC
Confidence            7653    7899999998764 3333332 3345666789999999988874 5 99999998763   3333222 344


Q ss_pred             ceEEEEEeCCC
Q 003842          725 KFHSCVFHPTY  735 (792)
Q Consensus       725 ~i~si~fspdg  735 (792)
                      .+..++|.|..
T Consensus       305 ~~~g~~~~pk~  315 (493)
T PTZ00421        305 PHKGLCMMPKW  315 (493)
T ss_pred             CCcceEecccc
Confidence            57778888753

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=1.3e-25  Score=221.29  Aligned_cols=239  Identities=23%  Similarity=0.398  Sum_probs=208.2

Q ss_pred             EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCce-eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 003842          548 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS  626 (792)
Q Consensus       548 ~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~-i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwd  626 (792)
                      +.+.+|...|.+|+|+.+|..|++|+.|+++.||+++..... -....+|.+.|..++|+|....+|++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            456689999999999999999999999999999999864221 1345689999999999999999999999999999999


Q ss_pred             cCCCeeEEEee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE-eCCeEE
Q 003842          627 INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-SEDSVR  703 (792)
Q Consensus       627 l~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~-s~d~I~  703 (792)
                      ++.++++....  ++...+.|+|++++++++..|..|.++|.++.+.+...+ ....+..++|+.++.+++.. +.++|.
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~  172 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE  172 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence            99999987764  566778999999999999999999999999988877655 44567888998777755544 446888


Q ss_pred             EEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 003842          704 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA  782 (792)
Q Consensus       704 IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSg  782 (792)
                      |.....   .+.+..+..|.....++.|+|+|+||++|+.|-.+.+||+.+.-++ .+..++-+|..+.|+.||++||+|
T Consensus       173 ILsyps---Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa  249 (313)
T KOG1407|consen  173 ILSYPS---LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA  249 (313)
T ss_pred             EEeccc---cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence            888854   4888999999999999999999999999999999999999998877 677899999999999999999999


Q ss_pred             eCCCcEEE
Q 003842          783 SHDKFVKL  790 (792)
Q Consensus       783 s~DG~I~I  790 (792)
                      ++|..|-|
T Consensus       250 SEDh~IDI  257 (313)
T KOG1407|consen  250 SEDHFIDI  257 (313)
T ss_pred             CccceEEe
Confidence            99998865

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=8.3e-25  Score=220.46  Aligned_cols=283  Identities=20%  Similarity=0.278  Sum_probs=213.3

Q ss_pred             eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE--Ee--ccCCCCEEEEEECCCCCeEEEE-eCCCcEE
Q 003842          505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NL--EEHSSLITDVRFSPSMPRLATS-SFDKTVR  579 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~--~l--~~h~~~V~~i~fspdg~~Lasg-s~Dg~V~  579 (792)
                      +..|++|.+.|+|++|+.||++||+++.|++|+||++++.....  .+  .-.-+.-+.++|.||-+-+++. -...+++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            45689999999999999999999999999999999998753221  11  1123356889999998865555 4455799


Q ss_pred             EEeCCCCC---cee--------EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEE
Q 003842          580 VWDADNPG---YSL--------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRF  645 (792)
Q Consensus       580 IWdl~s~~---~~i--------~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~  645 (792)
                      +|.+....   ...        ..-..|.-.|..+-.... ..+|++++.|..|++|+++ |..+..+..   .....+.
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav  236 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV  236 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence            99876421   111        111234555656555444 5678899999999999999 777776654   3455889


Q ss_pred             ecCCCEEEEEEcCCeEEEEECC---CC-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC----CC
Q 003842          646 QPHLGRYLAAAAENVVSILDAE---TQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG----SE  712 (792)
Q Consensus       646 sp~~~~lla~s~dg~I~i~D~~---t~-----~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~----~~  712 (792)
                      +|+|..+++++..-.|++|.+-   .+     ..++.+++|...|..++|+++.+.+++.+.| +++|||+.-.    ..
T Consensus       237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD  316 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD  316 (420)
T ss_pred             CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence            9999999999999999999863   22     3567889999999999999999999999999 9999998532    22


Q ss_pred             cceEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 003842          713 GECVHEL----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK  786 (792)
Q Consensus       713 ~~~i~~~----~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fspdg~~LaSgs~DG  786 (792)
                      .+.+++.    ...+.....+.++|.|..|++.. ...|.+|..++++..  ....|...|.+++|+++|+++++|| |.
T Consensus       317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr  394 (420)
T KOG2096|consen  317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR  394 (420)
T ss_pred             chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence            2333322    22334455899999999776654 458999999998877  3457999999999999999999997 66


Q ss_pred             cEEEe
Q 003842          787 FVKLW  791 (792)
Q Consensus       787 ~I~IW  791 (792)
                      .++++
T Consensus       395 ~vrv~  399 (420)
T KOG2096|consen  395 YVRVI  399 (420)
T ss_pred             eeeee
Confidence            67664

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.1e-23  Score=203.13  Aligned_cols=287  Identities=21%  Similarity=0.301  Sum_probs=232.4

Q ss_pred             ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC------C----c-----eeEEeccCCCCEEEEEECCC
Q 003842          501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------L----K-----SKTNLEEHSSLITDVRFSPS  565 (792)
Q Consensus       501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t------~----~-----~~~~l~~h~~~V~~i~fspd  565 (792)
                      .|..+..+ ..+..|.+++|+|.|.+.|+|+..++++|.-...      +    +     ..+.-+.|.+.|.|.+|+|+
T Consensus        22 ~f~~i~~l-~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   22 HFEAINIL-EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             ceEEEEEe-cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence            34444444 4456799999999999999999999988874321      1    0     11223468999999999999


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCc----eeEEecccCCCeEEEEEcCC---CCeEEEEEe-CCCcEEEEEcCCCeeEEEee
Q 003842          566 MPRLATSSFDKTVRVWDADNPGY----SLRTFMGHSASVMSLDFHPN---KDDLICSCD-GDGEIRYWSINNGSCTRVFK  637 (792)
Q Consensus       566 g~~Lasgs~Dg~V~IWdl~s~~~----~i~~~~~h~~~V~sl~fspd---~~~ll~sgs-~Dg~I~iwdl~~~~~~~~~~  637 (792)
                      |.+|++|+.|++|++.-++.+..    .-..|.-|.+.|..++|..+   +..++++++ .|..|++-|...+.....+.
T Consensus       101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s  180 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS  180 (350)
T ss_pred             cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence            99999999999999987764221    23456779999999999643   445665554 47888888999998888877


Q ss_pred             CCeeEE--EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC--C-----CCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 003842          638 GGTAQM--RFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H-----TKPIDSVCWDPSGELLASVSED-SVRVWTV  707 (792)
Q Consensus       638 ~~~~~v--~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~--h-----~~~V~sv~~spdg~~Las~s~d-~I~IwDl  707 (792)
                      ++...+  -++-++-.++.++.|.+|++||++-..++.++..  |     ...|.+++.+|.|++|++|-.| ...+||+
T Consensus       181 ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi  260 (350)
T KOG0641|consen  181 GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI  260 (350)
T ss_pred             CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence            655432  2455667788888899999999999888887653  2     3569999999999999999999 9999999


Q ss_pred             CCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-----EEEEcccCCCeEEEEEeCCCCEEEEE
Q 003842          708 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-----TMTLTAHEGLIAALAVSTETGYVASA  782 (792)
Q Consensus       708 ~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~-----~~~~~~h~~~V~sl~fspdg~~LaSg  782 (792)
                      +.+   +.+..+..|...|.++.|+|...|+++++.|..|++-|+...-     .+.+..|...+..+.|+|..--+++.
T Consensus       261 rg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss  337 (350)
T KOG0641|consen  261 RGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS  337 (350)
T ss_pred             eCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence            877   7889999999999999999999999999999999999987532     34667899999999999988888999


Q ss_pred             eCCCcEEEe
Q 003842          783 SHDKFVKLW  791 (792)
Q Consensus       783 s~DG~I~IW  791 (792)
                      +.|.++.+|
T Consensus       338 sadkt~tlw  346 (350)
T KOG0641|consen  338 SADKTATLW  346 (350)
T ss_pred             cCcceEEEe
Confidence            999999999

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=6.7e-25  Score=249.86  Aligned_cols=257  Identities=25%  Similarity=0.450  Sum_probs=221.2

Q ss_pred             CCCCCCcceeccCCcceeeeee-eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECC
Q 003842          486 PRDAGGRGMDVSQGFSFKEANS-VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP  564 (792)
Q Consensus       486 ~~d~~~~~~d~~~~~~~~~~~~-l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp  564 (792)
                      ..+.+.+.|+...+   ..+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||+.++.+...+.+|.+.|.++...+
T Consensus       225 s~~~tl~~~~~~~~---~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~  301 (537)
T KOG0274|consen  225 SDDSTLHLWDLNNG---YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP  301 (537)
T ss_pred             CCCceeEEeecccc---eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC
Confidence            34445556665554   45566 999999999999998788999999999999999999999999999999999998764


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEE
Q 003842          565 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR  644 (792)
Q Consensus       565 dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~  644 (792)
                        .++++|+.|.+|+||++.+ +..+..+.+|.+.|.++.++   ..++++|+.|++|++||+.++++++.+.++...+.
T Consensus       302 --~~~~sgs~D~tVkVW~v~n-~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~  375 (537)
T KOG0274|consen  302 --FLLVSGSRDNTVKVWDVTN-GACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVY  375 (537)
T ss_pred             --ceEeeccCCceEEEEeccC-cceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEE
Confidence              4788899999999999997 78899999999999999998   34777999999999999999999999987654432


Q ss_pred             -EecCC-CEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee
Q 003842          645 -FQPHL-GRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS  720 (792)
Q Consensus       645 -~sp~~-~~lla~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~  720 (792)
                       +..+. ..++.|+.|+.|++||+++. +++.++.+|..-|.++.  ..+++|++++.| .|++||+.++   .+++.+.
T Consensus       376 sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~---~~~~~~~  450 (537)
T KOG0274|consen  376 SLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEG---ECLRTLE  450 (537)
T ss_pred             EEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEEEeecccC---ceeeeec
Confidence             24444 89999999999999999999 99999999999886665  457899999999 9999999877   7777777


Q ss_pred             c-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          721 C-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       721 ~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      + +...+..+++.  ...+++++.++.+++||++++...
T Consensus       451 ~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  451 GRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             cCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence            7 56778777776  567999999999999999999877

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.6e-24  Score=218.55  Aligned_cols=269  Identities=18%  Similarity=0.254  Sum_probs=216.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003842          511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL  590 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i  590 (792)
                      ..+.|..+.|++.+..|++++.||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+++|+.+.  ..
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~--~~   87 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG--NE   87 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCC--cc
Confidence            3567999999999999999999999999999987555544 4889999999997 458999999999999999973  34


Q ss_pred             EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003842          591 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA  670 (792)
Q Consensus       591 ~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~  670 (792)
                      ..+..|...|.||.+++..+ .+++|++|++|++||.+.......+.......+.+..++.|++|+.+..|.+||+++..
T Consensus        88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence            55667999999999997654 56699999999999999876776776666667788888999999999999999999876


Q ss_pred             EEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-CcceEEEeecCC---------CceEEEEEeCCCCE
Q 003842          671 CRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-EGECVHELSCNG---------NKFHSCVFHPTYPS  737 (792)
Q Consensus       671 ~~~~l~~--h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~-~~~~i~~~~~~~---------~~i~si~fspdg~~  737 (792)
                      .......  .+-.++||++.|++.-+++++-+ .|.+=.+.... .......+++|.         .+|.+++|+|-...
T Consensus       167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t  246 (323)
T KOG1036|consen  167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT  246 (323)
T ss_pred             chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence            5553322  34568999999988766666665 66664444321 112333444443         35899999999999


Q ss_pred             EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeC
Q 003842          738 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASH  784 (792)
Q Consensus       738 L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~  784 (792)
                      |++|+.||.|.+||+.+.+.+ .+...+..|.+++|+.||..||+++.
T Consensus       247 faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  247 FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            999999999999999988877 56666788999999999999999874

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=1.6e-25  Score=232.77  Aligned_cols=258  Identities=22%  Similarity=0.383  Sum_probs=221.6

Q ss_pred             CCCCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEEC
Q 003842          484 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS  563 (792)
Q Consensus       484 ~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fs  563 (792)
                      +++.|..++.|++.... ...+.+|.+..+.|+.+.|.+++++++++++|+.+++|+++......+|.+|.+.|+++.|.
T Consensus       192 tgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~  270 (459)
T KOG0288|consen  192 TGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK  270 (459)
T ss_pred             hcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhh
Confidence            45566667777776554 66888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--CCee
Q 003842          564 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTA  641 (792)
Q Consensus       564 pdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~  641 (792)
                      .....+++|+.|.+|++||+.+ .++.+++. ....+.+|+..   ...+++|-.|+.|++||++...++....  +.+.
T Consensus       271 ~~~~~vVsgs~DRtiK~WDl~k-~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vt  345 (459)
T KOG0288|consen  271 LSHSRVVSGSADRTIKLWDLQK-AYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVT  345 (459)
T ss_pred             ccccceeeccccchhhhhhhhh-hheecccc-ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCccee
Confidence            8877799999999999999997 66666655 34456667665   3457799999999999999999888765  5678


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC----CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceE
Q 003842          642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH----TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV  716 (792)
Q Consensus       642 ~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h----~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i  716 (792)
                      ++..++++..+++++.|..+.++|+++...+..+...    ...++.++|+|++.|+++|+.| .|+||++.++   ++.
T Consensus       346 Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE  422 (459)
T KOG0288|consen  346 SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLE  422 (459)
T ss_pred             eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc---eEE
Confidence            8999999999999999999999999999888777542    2347889999999999999999 9999999887   455


Q ss_pred             EEeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003842          717 HELSCNGN--KFHSCVFHPTYPSLLVIGCYQSLELW  750 (792)
Q Consensus       717 ~~~~~~~~--~i~si~fspdg~~L~sgs~dg~I~Iw  750 (792)
                      ..+.....  .|++++|+|.|.++++++.++.+.+|
T Consensus       423 ~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  423 KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             EEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            54444433  59999999999999999999999999

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.5e-24  Score=228.42  Aligned_cols=277  Identities=19%  Similarity=0.282  Sum_probs=223.8

Q ss_pred             eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE----E-------------e-ccCCCCEEEEEECCCC
Q 003842          505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT----N-------------L-EEHSSLITDVRFSPSM  566 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~----~-------------l-~~h~~~V~~i~fspdg  566 (792)
                      +..+..|.-+|+||++++|++++++++.|++|.-|++.+++...    +             - +.|...|.+++.++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            67788999999999999999999999999999999998776431    1             0 2688899999999999


Q ss_pred             CeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEE
Q 003842          567 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQM  643 (792)
Q Consensus       567 ~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v  643 (792)
                      +|||+|+.|..|.||+.++ ...+..+.+|.+.|.+++|-..... +++++.|+.|++|++.....+.++.++   +..+
T Consensus       215 kylatgg~d~~v~Iw~~~t-~ehv~~~~ghr~~V~~L~fr~gt~~-lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDT-LEHVKVFKGHRGAVSSLAFRKGTSE-LYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             cEEEecCCCceEEEecCcc-cchhhcccccccceeeeeeecCccc-eeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence            9999999999999999998 7788889999999999999866544 458999999999999988877766554   4555


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee--
Q 003842          644 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS--  720 (792)
Q Consensus       644 ~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~--  720 (792)
                      ........+-+++.|.++++|++ ..+....+.++.+.+.|++|..+ ..|++|+++ .|.+|++.+.+   ++....  
T Consensus       293 daL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk---plf~~~~A  367 (479)
T KOG0299|consen  293 DALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK---PLFTSRLA  367 (479)
T ss_pred             chhcccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccC---ceeEeecc
Confidence            55666666667779999999999 44555667788999999999754 567788888 99999997653   332221  


Q ss_pred             ----------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC----cEEEEcccCCCeEEEEEeCCCCEEEEE-eCC
Q 003842          721 ----------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN----KTMTLTAHEGLIAALAVSTETGYVASA-SHD  785 (792)
Q Consensus       721 ----------~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~----~~~~~~~h~~~V~sl~fspdg~~LaSg-s~D  785 (792)
                                .+..+|++++..|..+.+++|+.+|.|++|-+.++    .++....-.+.|++|+|+++|++|++| +..
T Consensus       368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkE  447 (479)
T KOG0299|consen  368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKE  447 (479)
T ss_pred             ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccc
Confidence                      11237999999999999999999999999999887    233334577899999999999965554 444


Q ss_pred             CcE
Q 003842          786 KFV  788 (792)
Q Consensus       786 G~I  788 (792)
                      ..+
T Consensus       448 hRl  450 (479)
T KOG0299|consen  448 HRL  450 (479)
T ss_pred             ccc
Confidence            443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=3.6e-24  Score=211.67  Aligned_cols=248  Identities=18%  Similarity=0.234  Sum_probs=207.0

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC-----CCcE
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-----DKTV  578 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~-----Dg~V  578 (792)
                      .+.+++||++.|+||+.+.+.++|++|+.|.+++|||+++|+.+..++ ....|..+.|+++|++++.+..     .+.|
T Consensus        44 rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v  122 (327)
T KOG0643|consen   44 RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFV  122 (327)
T ss_pred             eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEE
Confidence            567889999999999999999999999999999999999999999987 4567999999999998877754     4679


Q ss_pred             EEEeCCCC------CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE----eeCCeeEEEEecC
Q 003842          579 RVWDADNP------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTAQMRFQPH  648 (792)
Q Consensus       579 ~IWdl~s~------~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~~~~~~v~~sp~  648 (792)
                      .++|++..      ..++..+..+...|+...|.|.++.+ ++|.+||.|.+||++++..+..    +...++.+.++++
T Consensus       123 ~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i-i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d  201 (327)
T KOG0643|consen  123 SVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI-IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD  201 (327)
T ss_pred             EEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE-EEecCCCcEEEEEcccCceeeechhhhccccccccccCC
Confidence            99999842      34577777888999999999998755 4999999999999999865432    3457888999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCC---------cceE
Q 003842          649 LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSE---------GECV  716 (792)
Q Consensus       649 ~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~~~---------~~~i  716 (792)
                      ..++++++.|..-++||.++..+++++. ...+|++.+++|..++++.++.-   .|.-=+.+.++.         .+.+
T Consensus       202 ~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEi  280 (327)
T KOG0643|consen  202 RTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEI  280 (327)
T ss_pred             cceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHh
Confidence            9999999999999999999999999987 56899999999987777666543   233333332211         1445


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003842          717 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       717 ~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~  754 (792)
                      ..+.+|-++|++++|+|+|+..++|+.||.|++.-++.
T Consensus       281 grvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  281 GRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             ccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            67889999999999999999999999999999986543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=3.4e-23  Score=221.56  Aligned_cols=262  Identities=13%  Similarity=0.112  Sum_probs=204.1

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCCCCCceeEEecccCCCeEE
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS  602 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~L-asgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~s  602 (792)
                      ++++++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+ +..+..+..+. .+..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~-~~~~   77 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPSGP-DPEL   77 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccCCC-CccE
Confidence            3578899999999999999999888887654 46789999999876 5667889999999987 45555555443 3568


Q ss_pred             EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEecCCC
Q 003842          603 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHT  679 (792)
Q Consensus       603 l~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~dg-~I~i~D~~t~~~~~~l~~h~  679 (792)
                      ++|+|+++.++++++.|+.|++||+.+.+.+..+..  ....++|+|++..++++..++ .+.+||.++++.+..+.. .
T Consensus        78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~  156 (300)
T TIGR03866        78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D  156 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence            899999987877777899999999999888777753  357799999999998888765 577889998877665442 2


Q ss_pred             CCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceEEEeecC-------CCceEEEEEeCCCCEEEEE-EcCCeEEE
Q 003842          680 KPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVFHPTYPSLLVI-GCYQSLEL  749 (792)
Q Consensus       680 ~~V~sv~~spdg~~Las~s-~d-~I~IwDl~s~~~~~~i~~~~~~-------~~~i~si~fspdg~~L~sg-s~dg~I~I  749 (792)
                      ..+.+++|++++.+|++++ .+ .|++||+++++   .+..+..+       ......++|+|++++++++ +.++.|.+
T Consensus       157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v  233 (300)
T TIGR03866       157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK---VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV  233 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce---eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence            3457899999999886554 35 99999998763   33333211       1124568899999986664 45678999


Q ss_pred             EECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE-eCCCcEEEeC
Q 003842          750 WNMSENKTMTLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK  792 (792)
Q Consensus       750 wDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSg-s~DG~I~IWd  792 (792)
                      ||+.+++.+....+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus       234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d  277 (300)
T TIGR03866       234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID  277 (300)
T ss_pred             EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence            999998877554556689999999999999876 4689999997

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.6e-24  Score=216.14  Aligned_cols=257  Identities=21%  Similarity=0.379  Sum_probs=208.6

Q ss_pred             EEEEEeCCCeEEEEECCC------------CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003842          526 LLATGGHDKKAVLWHTDT------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF  593 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t------------~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~  593 (792)
                      .|++|++...|.-+++.-            ...+..+..|.+.|++++.+  +.++|+|+.|.+|+|||+.+ ...+..+
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k-~~qlg~l   79 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK-RKQLGIL   79 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccc-hhhhcce
Confidence            467777777777776642            12345567899999999984  78999999999999999997 6677788


Q ss_pred             cccCCCeEEEEEcCCCC--eEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003842          594 MGHSASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAET  668 (792)
Q Consensus       594 ~~h~~~V~sl~fspd~~--~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I~i~D~~t  668 (792)
                      ..|.+.|+++.|.+.-.  +|| +|+.||.|.+|+....+++..++.   .++.++++|.++..++.+.|+.+++||+-+
T Consensus        80 l~HagsitaL~F~~~~S~shLl-S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~  158 (362)
T KOG0294|consen   80 LSHAGSITALKFYPPLSKSHLL-SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR  158 (362)
T ss_pred             eccccceEEEEecCCcchhhee-eecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence            88999999999988753  555 999999999999999988887764   578899999999999999999999999999


Q ss_pred             CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003842          669 QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLE  748 (792)
Q Consensus       669 ~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~  748 (792)
                      ++.-+.+.-. ..-+.|.|+|.|.+++.+..+.|-||.+.+.   ..+.++.. ...+.++.| -++.+|++|+.++.|.
T Consensus       159 Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A---~v~~~i~~-~~r~l~~~~-l~~~~L~vG~d~~~i~  232 (362)
T KOG0294|consen  159 GRVAFVLNLK-NKATLVSWSPQGDHFVVSGRNKIDIYQLDNA---SVFREIEN-PKRILCATF-LDGSELLVGGDNEWIS  232 (362)
T ss_pred             CccceeeccC-CcceeeEEcCCCCEEEEEeccEEEEEecccH---hHhhhhhc-cccceeeee-cCCceEEEecCCceEE
Confidence            8776665532 2234499999999999999999999998764   22222222 233555554 4667899999999999


Q ss_pred             EEECCCCcEE-EEcccCCCeEEEEE--eCCCCEEEEEeCCCcEEEeC
Q 003842          749 LWNMSENKTM-TLTAHEGLIAALAV--STETGYVASASHDKFVKLWK  792 (792)
Q Consensus       749 IwDl~~~~~~-~~~~h~~~V~sl~f--spdg~~LaSgs~DG~I~IWd  792 (792)
                      +||.+...+. .+.+|...|-++.+  .|++.||+|++.||.|+|||
T Consensus       233 ~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd  279 (362)
T KOG0294|consen  233 LKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD  279 (362)
T ss_pred             EeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence            9999987776 77899999999985  46788999999999999997

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.3e-24  Score=217.14  Aligned_cols=275  Identities=20%  Similarity=0.313  Sum_probs=222.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec
Q 003842          515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM  594 (792)
Q Consensus       515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~  594 (792)
                      ..||.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++|++||++|+|++.|..|.+||+.. +.++..+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999998 44666554


Q ss_pred             ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE--E-----eeCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003842          595 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--V-----FKGGTAQMRFQPHLGRYLAAAAENVVSILDAE  667 (792)
Q Consensus       595 ~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~--~-----~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~  667 (792)
                       ...+|+...|+|...+.++++-.+..-.+.++...+...  .     +.....+..|.+.++++++|...|.+.+||.+
T Consensus       105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~  183 (405)
T KOG1273|consen  105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE  183 (405)
T ss_pred             -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence             678999999999887777666666656666665432211  1     11122334688999999999999999999999


Q ss_pred             CCeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC------CcceEEEee--cCCCceEEEEEeCCCCE
Q 003842          668 TQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSGS------EGECVHELS--CNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       668 t~~~~~~l~~h~-~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~------~~~~i~~~~--~~~~~i~si~fspdg~~  737 (792)
                      +.+++..++-.. ..|..|.|+..|++|+..+.| .|+.|+++.-.      +.+..+.+.  .......+|+|+.+|.|
T Consensus       184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY  263 (405)
T KOG1273|consen  184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY  263 (405)
T ss_pred             hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence            999998887655 779999999999999999999 99999986321      111111111  12334678999999999


Q ss_pred             EEEEEcC-CeEEEEECCCCcEE-EEcccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          738 LLVIGCY-QSLELWNMSENKTM-TLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       738 L~sgs~d-g~I~IwDl~~~~~~-~~~~h~-~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +++++.. ..++||....|.++ .+.+.+ .....+.|+|-...|++- ..|.|+||.
T Consensus       264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~  320 (405)
T KOG1273|consen  264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA  320 (405)
T ss_pred             EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence            9988754 48999999999988 455655 567889999998888877 789999993

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=2.9e-24  Score=235.69  Aligned_cols=273  Identities=18%  Similarity=0.310  Sum_probs=228.4

Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--EEeccCCCCEEE-EEECC-CCCeEEEEeCCCc
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHSSLITD-VRFSP-SMPRLATSSFDKT  577 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~--~~l~~h~~~V~~-i~fsp-dg~~Lasgs~Dg~  577 (792)
                      ++..+.+.+|...|..+++.++. .+++++.||++++|+-.....+  ..+.+|.+.|.+ ++|.+ ++..|++|+.|++
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence            56678899999999999877665 8999999999999997654443  456778888887 88886 4457999999999


Q ss_pred             EEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEE
Q 003842          578 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLA  654 (792)
Q Consensus       578 V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla  654 (792)
                      |.+|.+.. ..++.++.+|...|.|+....++.  +++|+.|.++++|-+.  ++...+.+   .+..+.+.|.. .+++
T Consensus        83 i~v~~~~~-~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vT  156 (745)
T KOG0301|consen   83 IIVFKLSQ-AEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVT  156 (745)
T ss_pred             EEEEecCC-CCchhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEe
Confidence            99999987 788999999999999999877754  6699999999999875  34444444   45567777776 9999


Q ss_pred             EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC
Q 003842          655 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP  733 (792)
Q Consensus       655 ~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp  733 (792)
                      |+.|..|++|.-  ++++.+|.+|.+.|+.+++-+++.+ ++|+.| .|++|++ ++   .++.++.+|.+.++++....
T Consensus       157 gsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~f-lScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~~  229 (745)
T KOG0301|consen  157 GSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHF-LSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMAL  229 (745)
T ss_pred             ccCcceeeeccC--CchhhhhccchhheeeeEEecCCCe-EeecCCceEEEEec-cC---ceeeeeeccceEEEEEEecC
Confidence            999999999986  7888999999999999999887654 556666 9999999 34   79999999999999999888


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCcEEEEcccCC-CeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          734 TYPSLLVIGCYQSLELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       734 dg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~-~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ++..|++++.|++++||+..  ++.....|.. .|+++++-++|. |++|+.||.||||
T Consensus       230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf  285 (745)
T KOG0301|consen  230 SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF  285 (745)
T ss_pred             CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence            88899999999999999987  5665555555 899999988886 5578889999998

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=1.2e-23  Score=222.59  Aligned_cols=276  Identities=18%  Similarity=0.296  Sum_probs=232.5

Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceeEEec--cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~---~~~~~l~--~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      -.|..-|.++.+|...++++||+ .|.|+|||+...   ..+..+.  .....|+++.+.|||+.|++|++-.+|.|||+
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            36888888899999999999997 678999999643   3344443  24678999999999999999999999999999


Q ss_pred             CCCCceeE-EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCC
Q 003842          584 DNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN  659 (792)
Q Consensus       584 ~s~~~~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg  659 (792)
                      ..+...++ .+....-.+.+++.+||.+ +.++|..||.|.|||+.+...++.|.+   +..|+.++++|.+|.+|+-|+
T Consensus       495 AapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn  573 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN  573 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence            87554443 2333345577899999976 555888899999999999999999875   578999999999999999999


Q ss_pred             eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003842          660 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL  738 (792)
Q Consensus       660 ~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L  738 (792)
                      +|+.||+++++.+.... ....|.++.++|.+++|++|-++ .+.|......    ..+.+.-|+..|.++.|.+.|+++
T Consensus       574 tvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwf  648 (705)
T KOG0639|consen  574 TVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWF  648 (705)
T ss_pred             ceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCcee
Confidence            99999999987665433 45679999999999999999988 8888776542    344566788999999999999999


Q ss_pred             EEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          739 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       739 ~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ++.+.|+.+..|...-+..+.-......|.++.++.|.+||+||+.|....||
T Consensus       649 vStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY  701 (705)
T KOG0639|consen  649 VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY  701 (705)
T ss_pred             eecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence            99999999999999999888777788899999999999999999999887776

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=3.6e-24  Score=214.99  Aligned_cols=290  Identities=14%  Similarity=0.246  Sum_probs=227.0

Q ss_pred             ceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeee
Q 003842          431 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS  507 (792)
Q Consensus       431 ~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~  507 (792)
                      ..-.|++||..+++++.+   +|.|++..--+.....+.. +                  +         .......+++
T Consensus       116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~-~------------------~---------~qa~hPvIRT  167 (430)
T KOG0640|consen  116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMIS-G------------------D---------TQARHPVIRT  167 (430)
T ss_pred             eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhcc-C------------------C---------cccCCceEee
Confidence            356899999999887655   7877653211110000000 0                  0         0111246788


Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~--~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      |-.|.+.|+++.|+|....|++|+.|++|++||+.....++.++  .....|.+|.|+|.|.+|++|....++++||+++
T Consensus       168 lYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T  247 (430)
T KOG0640|consen  168 LYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT  247 (430)
T ss_pred             hhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence            99999999999999999999999999999999998655444433  3567899999999999999999999999999997


Q ss_pred             CCceeEEe---cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC-----CeeEEEEecCCCEEEEEEc
Q 003842          586 PGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       586 ~~~~i~~~---~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~~~lla~s~  657 (792)
                       ..+...-   ..|.+.|+++.+++.++ +.++++.||.|++||--+++|++.+..     .+.+..|..+++++++.+.
T Consensus       248 -~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~  325 (430)
T KOG0640|consen  248 -YQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK  325 (430)
T ss_pred             -eeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence             3333222   36899999999999976 566999999999999999999988752     4566789999999999999


Q ss_pred             CCeEEEEECCCCeEEEEecCCC--C---CeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEE
Q 003842          658 ENVVSILDAETQACRLSLQGHT--K---PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCV  730 (792)
Q Consensus       658 dg~I~i~D~~t~~~~~~l~~h~--~---~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~  730 (792)
                      |..|++|.+.+++++..+.+-.  +   --+...|+....|++.-.+.  .++-||.++.....  ..-.+|.+.+..+.
T Consensus       326 DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~--l~slgHn~a~R~i~  403 (430)
T KOG0640|consen  326 DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA--LLSLGHNGAVRWIV  403 (430)
T ss_pred             cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh--hcccCCCCCceEEE
Confidence            9999999999999999887631  1   12345688888888887766  79999998864322  22346889999999


Q ss_pred             EeCCCCEEEEEEcCCeEEEEEC
Q 003842          731 FHPTYPSLLVIGCYQSLELWNM  752 (792)
Q Consensus       731 fspdg~~L~sgs~dg~I~IwDl  752 (792)
                      -+|.+..+++++.|..+++|--
T Consensus       404 HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  404 HSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             eCCCCCceeeecccceeeeeee
Confidence            9999999999999999999964

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=5e-23  Score=235.33  Aligned_cols=239  Identities=15%  Similarity=0.210  Sum_probs=180.6

Q ss_pred             CCCcceeccCCcceeeeeeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc--------eeEEeccCCCCEEE
Q 003842          489 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHSSLITD  559 (792)
Q Consensus       489 ~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~t~~--------~~~~l~~h~~~V~~  559 (792)
                      ..+++|+....   ..+..+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++.        .+..+.+|...|.+
T Consensus        54 gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~s  130 (568)
T PTZ00420         54 GAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI  130 (568)
T ss_pred             eEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEE
Confidence            34445544332   467788999999999999996 7899999999999999997642        34467889999999


Q ss_pred             EEECCCCCe-EEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC
Q 003842          560 VRFSPSMPR-LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG  638 (792)
Q Consensus       560 i~fspdg~~-Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~  638 (792)
                      |+|+|++.. |++++.|++|+|||+++ +..+..+. |...|.+++|+++|. +|++++.|+.|+|||+++++.+..+.+
T Consensus       131 Vaf~P~g~~iLaSgS~DgtIrIWDl~t-g~~~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~g  207 (568)
T PTZ00420        131 IDWNPMNYYIMCSSGFDSFVNIWDIEN-EKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHI  207 (568)
T ss_pred             EEECCCCCeEEEEEeCCCeEEEEECCC-CcEEEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEec
Confidence            999998875 57899999999999997 44455554 567899999999987 556888899999999999998887765


Q ss_pred             Cee---E-----EEEecCCCEEEEEEcCC----eEEEEECCC-CeEEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eE
Q 003842          639 GTA---Q-----MRFQPHLGRYLAAAAEN----VVSILDAET-QACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SV  702 (792)
Q Consensus       639 ~~~---~-----v~~sp~~~~lla~s~dg----~I~i~D~~t-~~~~~~l~--~h~~~V~sv~~spdg~~Las~s~d-~I  702 (792)
                      +..   .     ..|+++++++++++.++    .|+|||+++ .+++..+.  .+.+.+......++|.++++|+.| .|
T Consensus       208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI  287 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC  287 (568)
T ss_pred             ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence            431   1     22457888999988764    799999996 45555443  233334444344568889899888 99


Q ss_pred             EEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003842          703 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY  735 (792)
Q Consensus       703 ~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg  735 (792)
                      ++|++..+ ....+..+. +..++.+++|.|+.
T Consensus       288 r~~e~~~~-~~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        288 RYYQHSLG-SIRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEEccCC-cEEeecccc-cCCCccceEEcccc
Confidence            99999765 223333333 45678889999864

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.7e-22  Score=194.98  Aligned_cols=248  Identities=19%  Similarity=0.322  Sum_probs=206.6

Q ss_pred             eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----eeEEeccCCCCEEEEEECCC----CCeEEEEe
Q 003842          503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHSSLITDVRFSPS----MPRLATSS  573 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~-----~~~~l~~h~~~V~~i~fspd----g~~Lasgs  573 (792)
                      ...+.-+.|.+.|+|.+|+|+|.+||+|+.|++|++.-++...     ....+.-|.+.|.+++|..+    +.+|++++
T Consensus        80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g  159 (350)
T KOG0641|consen   80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG  159 (350)
T ss_pred             EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence            4556678899999999999999999999999999997665332     23456679999999999763    34666654


Q ss_pred             -CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----------CCeeE
Q 003842          574 -FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------GGTAQ  642 (792)
Q Consensus       574 -~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----------~~~~~  642 (792)
                       .|..|++-|... +..+..+.+|.+.|.++---  +..+|++|+.|.+|++||++-..++.++.          ..+..
T Consensus       160 agdc~iy~tdc~~-g~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa  236 (350)
T KOG0641|consen  160 AGDCKIYITDCGR-GQGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA  236 (350)
T ss_pred             CCcceEEEeecCC-CCcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence             466777778876 77889999999999887422  24689999999999999999999888753          23567


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-CcceEEEee
Q 003842          643 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-EGECVHELS  720 (792)
Q Consensus       643 v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~-~~~~i~~~~  720 (792)
                      +++.|.+..++++-.|....+||++.++.+..+..|...|.|+.|+|...|+++|+.| .|++-|+...- ....+..+.
T Consensus       237 v~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~  316 (350)
T KOG0641|consen  237 VAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA  316 (350)
T ss_pred             EEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE
Confidence            8899999999999999999999999999999999999999999999999999999999 99999986431 113445566


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003842          721 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       721 ~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~  753 (792)
                      .|..++..|.|+|..-.+++.+.|.++.+|-+.
T Consensus       317 ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  317 EHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             eccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            788899999999999889999999999999764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=6e-23  Score=208.31  Aligned_cols=245  Identities=20%  Similarity=0.329  Sum_probs=204.5

Q ss_pred             CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEe-CCCcE
Q 003842          544 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEI  622 (792)
Q Consensus       544 ~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs-~Dg~I  622 (792)
                      .+..+.+......|++|.|+++|.+|++++.|..|+|||..+ +..++++..++..|..++|......++.+.. .|.+|
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI   82 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI   82 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence            445566666788999999999999999999999999999998 7888888888888999999777666664433 38899


Q ss_pred             EEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003842          623 RYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE  699 (792)
Q Consensus       623 ~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~  699 (792)
                      ++.++.+.+.++.|.++   +..++.+|.++.+++++.|++|++||++..++...+.....+  .++|+|+|-++|++..
T Consensus        83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~  160 (311)
T KOG1446|consen   83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANG  160 (311)
T ss_pred             EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecC
Confidence            99999999999999875   677899999999999999999999999988877666543333  4789999999999998


Q ss_pred             C-eEEEEECCCCCCcceEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCC---eEEEE
Q 003842          700 D-SVRVWTVGSGSEGECVHELS---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL---IAALA  771 (792)
Q Consensus       700 d-~I~IwDl~s~~~~~~i~~~~---~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~---V~sl~  771 (792)
                      . .|++||+++... .+...+.   .....+..+.|+|||++|+.++..+.+++.|.-+|... .+..+...   -...+
T Consensus       161 ~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~  239 (311)
T KOG1446|consen  161 SELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT  239 (311)
T ss_pred             CCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence            8 999999998643 2222222   34667899999999999999999999999999999877 44444332   25778


Q ss_pred             EeCCCCEEEEEeCCCcEEEeC
Q 003842          772 VSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       772 fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |+||+++|++|+.||+|.||+
T Consensus       240 ftPds~Fvl~gs~dg~i~vw~  260 (311)
T KOG1446|consen  240 FTPDSKFVLSGSDDGTIHVWN  260 (311)
T ss_pred             ECCCCcEEEEecCCCcEEEEE
Confidence            999999999999999999996

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=2.4e-23  Score=209.12  Aligned_cols=229  Identities=17%  Similarity=0.309  Sum_probs=188.8

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC--eEEEEeCCCcEEEEeC
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDA  583 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~--~Lasgs~Dg~V~IWdl  583 (792)
                      +....|.++|.|++|+.||..+++|+.|+.+++||+.++ .+..+..|.++|.++.|-+...  .|+||+.|++|++||.
T Consensus        66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~  144 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT  144 (347)
T ss_pred             hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence            456688999999999999999999999999999999998 5677888999999999988766  8999999999999999


Q ss_pred             CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-E----EeeCCeeEEEEecCCCEEEEEEcC
Q 003842          584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-R----VFKGGTAQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~-~----~~~~~~~~v~~sp~~~~lla~s~d  658 (792)
                      +. ..++.++. ..+.|++++.-.   .+++.+..+..|.+|+++.+... +    .++--+.++++..+...++.|+-+
T Consensus       145 R~-~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE  219 (347)
T KOG0647|consen  145 RS-SNPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE  219 (347)
T ss_pred             CC-CCeeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence            97 55555554 456777777653   36778888999999999765432 2    234457888888888888999999


Q ss_pred             CeEEEEECCCC--eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCce
Q 003842          659 NVVSILDAETQ--ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF  726 (792)
Q Consensus       659 g~I~i~D~~t~--~~~~~l~~h~~---------~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i  726 (792)
                      |.+.|..++.+  +.-++|+.|..         .|++|+|+|....|++++.| ++.+||-...   ..+.....+..+|
T Consensus       220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpI  296 (347)
T KOG0647|consen  220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPI  296 (347)
T ss_pred             ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCcc
Confidence            99999988876  55667776652         47889999988888888877 9999998654   5677777889999


Q ss_pred             EEEEEeCCCCEEEEEEc
Q 003842          727 HSCVFHPTYPSLLVIGC  743 (792)
Q Consensus       727 ~si~fspdg~~L~sgs~  743 (792)
                      ++|+|+.+|.+++.+..
T Consensus       297 tcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  297 TCCSFNRNGSIFAYALG  313 (347)
T ss_pred             ceeEecCCCCEEEEEee
Confidence            99999999998876643

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.4e-23  Score=221.12  Aligned_cols=280  Identities=22%  Similarity=0.335  Sum_probs=220.2

Q ss_pred             ceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeee
Q 003842          431 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS  507 (792)
Q Consensus       431 ~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~  507 (792)
                      -.+.+++|++++++++.+   .-|++.+|+-...+-...+.                      .    -..+..+++-. 
T Consensus       146 ~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev----------------------~----k~~~~~~k~~r-  198 (479)
T KOG0299|consen  146 TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV----------------------L----KSHGNPLKESR-  198 (479)
T ss_pred             eEEEeeccccceeecCCCcceeeeehhcCcccccccccchh----------------------h----hhccCCCCccc-
Confidence            367889999998886655   44998888643221110000                      0    00122222222 


Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG  587 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~  587 (792)
                       ++|...|.|++.|+||+|||+|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|+.|++|+++. .
T Consensus       199 -~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~  276 (479)
T KOG0299|consen  199 -KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-L  276 (479)
T ss_pred             -ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-h
Confidence             49999999999999999999999999999999999999999999999999999999888999999999999999987 5


Q ss_pred             ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003842          588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSIL  664 (792)
Q Consensus       588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i~  664 (792)
                      ..+.++.+|.+.|.+|....- ..++.+|+.|+++++|++..... .+|.   +.+.|++|..+ ..+++|+.+|.|.+|
T Consensus       277 s~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In~-~HfvsGSdnG~IaLW  353 (479)
T KOG0299|consen  277 SYVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALW  353 (479)
T ss_pred             HHHHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEecc-cceeeccCCceEEEe
Confidence            677889999999999998765 45777788999999999954332 2232   34556666544 889999999999999


Q ss_pred             ECCCCeEEEEecC-C-----------CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-CcceEEEeecCCCceEEEE
Q 003842          665 DAETQACRLSLQG-H-----------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-EGECVHELSCNGNKFHSCV  730 (792)
Q Consensus       665 D~~t~~~~~~l~~-h-----------~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~-~~~~i~~~~~~~~~i~si~  730 (792)
                      ++-+.+++++... |           ..+|++++..|..+++++|+.+ .|++|-+..+- ....+..+. -.+.|++++
T Consensus       354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~  432 (479)
T KOG0299|consen  354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLA  432 (479)
T ss_pred             eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEE
Confidence            9999998887642 2           2389999999999999999988 99999998762 345555555 567899999


Q ss_pred             EeCCCCEEEEEEc
Q 003842          731 FHPTYPSLLVIGC  743 (792)
Q Consensus       731 fspdg~~L~sgs~  743 (792)
                      |+++|++|++|..
T Consensus       433 f~~sgk~ivagiG  445 (479)
T KOG0299|consen  433 FSNSGKRIVAGIG  445 (479)
T ss_pred             EccCCCEEEEecc
Confidence            9999997777743

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=6.6e-24  Score=232.01  Aligned_cols=245  Identities=24%  Similarity=0.335  Sum_probs=213.9

Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECC---CCCeEEEEeCCCcEEEEeCC
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP---SMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp---dg~~Lasgs~Dg~V~IWdl~  584 (792)
                      .-+....|.|++.+|+|.+||+|..-|+|+||++...+....++.|...|.|+.|+.   ..++||+++.|..|.|||+.
T Consensus       455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence            345566799999999999999999999999999999999999999999999999987   35689999999999999999


Q ss_pred             CCCceeEEecccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEe--------eCCeeEEEEecCCCEEEEE
Q 003842          585 NPGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVF--------KGGTAQMRFQPHLGRYLAA  655 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~--------~~~~~~v~~sp~~~~lla~  655 (792)
                      .+...+.++.+|...|++|.|...| +.-+++|+.|..|.+--.........|        +.....+++.|..++++++
T Consensus       535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~  614 (1080)
T KOG1408|consen  535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV  614 (1080)
T ss_pred             cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence            8777889999999999999997765 344569999998876544322111111        2345678999999999999


Q ss_pred             EcCCeEEEEECCCCeEEEEecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 003842          656 AAENVVSILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF  731 (792)
Q Consensus       656 s~dg~I~i~D~~t~~~~~~l~~---h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~f  731 (792)
                      +.|..|+|||+.+++.++.|++   |++....+..+|.|.||++.+.| ++.+||+.++   +|+....+|...|+.+.|
T Consensus       615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF  691 (1080)
T KOG1408|consen  615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKF  691 (1080)
T ss_pred             ecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeee
Confidence            9999999999999999999986   66778889999999999999988 9999999888   899999999999999999


Q ss_pred             eCCCCEEEEEEcCCeEEEEECCCC
Q 003842          732 HPTYPSLLVIGCYQSLELWNMSEN  755 (792)
Q Consensus       732 spdg~~L~sgs~dg~I~IwDl~~~  755 (792)
                      .+|.++|++.+.||.|.||.+...
T Consensus       692 ~nDCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  692 LNDCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             cccchhheeecCCceEEEEECchh
Confidence            999999999999999999998753

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=1.2e-23  Score=222.06  Aligned_cols=248  Identities=19%  Similarity=0.365  Sum_probs=204.1

Q ss_pred             eeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc----------eeEEeccCCCCEEEEEECCCCC-eEEEEe
Q 003842          506 NSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK----------SKTNLEEHSSLITDVRFSPSMP-RLATSS  573 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~t~~----------~~~~l~~h~~~V~~i~fspdg~-~Lasgs  573 (792)
                      ...-.|.+.|+.+.+-|. -.++|+++..+.|+|||..+..          +..+|.+|...-+.++|++... .|++++
T Consensus       118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~  197 (422)
T KOG0264|consen  118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS  197 (422)
T ss_pred             EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc
Confidence            334579999999999994 4577888899999999986422          2237889999889999999544 899999


Q ss_pred             CCCcEEEEeCCCCCc------eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEec
Q 003842          574 FDKTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQP  647 (792)
Q Consensus       574 ~Dg~V~IWdl~s~~~------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp  647 (792)
                      .|+.|++||+.....      ....+.+|...|..++|++....+|++++.|+.+.|||++++                 
T Consensus       198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-----------------  260 (422)
T KOG0264|consen  198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-----------------  260 (422)
T ss_pred             CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-----------------
Confidence            999999999985433      356788999999999999999999999999999999998852                 


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc
Q 003842          648 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK  725 (792)
Q Consensus       648 ~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~  725 (792)
                                          +.++.....+|..+|+|++|+| ++.+||+|+.| +|++||+++..  .+++.+.+|...
T Consensus       261 --------------------~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~de  318 (422)
T KOG0264|consen  261 --------------------TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDE  318 (422)
T ss_pred             --------------------CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcc
Confidence                                1123334566999999999999 55688889988 99999999764  588999999999


Q ss_pred             eEEEEEeCCC-CEEEEEEcCCeEEEEECCCC--------------c-EEEEcccCCCeEEEEEeCCCC-EEEEEeCCCcE
Q 003842          726 FHSCVFHPTY-PSLLVIGCYQSLELWNMSEN--------------K-TMTLTAHEGLIAALAVSTETG-YVASASHDKFV  788 (792)
Q Consensus       726 i~si~fspdg-~~L~sgs~dg~I~IwDl~~~--------------~-~~~~~~h~~~V~sl~fspdg~-~LaSgs~DG~I  788 (792)
                      |..+.|+|+. ..|++++.|+.+.|||+..-              + ++...+|...|..+.|+|+.. .|+++++|+.+
T Consensus       319 v~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~L  398 (422)
T KOG0264|consen  319 VFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNIL  398 (422)
T ss_pred             eEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceE
Confidence            9999999976 56778889999999999641              1 135568999999999999876 57788999999


Q ss_pred             EEeC
Q 003842          789 KLWK  792 (792)
Q Consensus       789 ~IWd  792 (792)
                      .||+
T Consensus       399 qIW~  402 (422)
T KOG0264|consen  399 QIWQ  402 (422)
T ss_pred             EEee
Confidence            9995

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.7e-24  Score=233.17  Aligned_cols=305  Identities=16%  Similarity=0.231  Sum_probs=246.6

Q ss_pred             CCCCCCCCcceeccCCcce---eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEeccCCCCEE
Q 003842          484 TDPRDAGGRGMDVSQGFSF---KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLIT  558 (792)
Q Consensus       484 ~~~~d~~~~~~d~~~~~~~---~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~--~~~~~l~~h~~~V~  558 (792)
                      ++++|+.++.|.+.....+   ....++..|.+.|..++...+|+.|++++.|-+|++|+...+  -++.++..|.+.|.
T Consensus        42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVk  121 (735)
T KOG0308|consen   42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVK  121 (735)
T ss_pred             ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchhe
Confidence            3566777788877665443   347788999999999999999999999999999999999877  68889999999999


Q ss_pred             EEEE-CCCCCeEEEEeCCCcEEEEeCCCCCc---------eeEEec-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc
Q 003842          559 DVRF-SPSMPRLATSSFDKTVRVWDADNPGY---------SLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI  627 (792)
Q Consensus       559 ~i~f-spdg~~Lasgs~Dg~V~IWdl~s~~~---------~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl  627 (792)
                      |+++ .++..++|+|+.|+.|.|||+++...         ....+. ++...|++++.++.+ .+|++|+..+.|++||.
T Consensus       122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDp  200 (735)
T KOG0308|consen  122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDP  200 (735)
T ss_pred             eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecc
Confidence            9999 78888999999999999999996422         122233 788999999999987 68889999999999999


Q ss_pred             CCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEE
Q 003842          628 NNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVR  703 (792)
Q Consensus       628 ~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~  703 (792)
                      ++++.+..+.++   +..+..+.+|..++++++||+|++||+...+++.++..|...|+++..+++-.++++|+.| .|+
T Consensus       201 rt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~  280 (735)
T KOG0308|consen  201 RTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIY  280 (735)
T ss_pred             ccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEE
Confidence            999888777654   5678899999999999999999999999999999999999999999999999999999999 999


Q ss_pred             EEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEE-----------------------
Q 003842          704 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL-----------------------  760 (792)
Q Consensus       704 IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~-----------------------  760 (792)
                      .=|+++......   +.....++..+..+.+..-+.+++.|+.|+-|...-...+..                       
T Consensus       281 ~Tdl~n~~~~tl---ick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~  357 (735)
T KOG0308|consen  281 RTDLRNPAKSTL---ICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPD  357 (735)
T ss_pred             ecccCCchhheE---eecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCc
Confidence            999987532222   223456677777776666668888889999887643221100                       


Q ss_pred             --cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          761 --TAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       761 --~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                        ......|...++-.|.++++|-..+|.+.+||
T Consensus       358 ~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD  391 (735)
T KOG0308|consen  358 SVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD  391 (735)
T ss_pred             eeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence              00111233334456788999999999999997

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=3.5e-22  Score=223.09  Aligned_cols=357  Identities=16%  Similarity=0.234  Sum_probs=254.4

Q ss_pred             CcceEEEEeCCCeeeecCCCeeEeCCCcchhhcccccccCCCCCCceeeeccCCC---CCCCCCCCcceeccCC-cc-ee
Q 003842          429 SKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQG-FS-FK  503 (792)
Q Consensus       429 ~k~~l~~s~Dg~~~~ss~s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~---~~~~d~~~~~~d~~~~-~~-~~  503 (792)
                      .+.+.+...+..+++++..+.|+-++.|+.+.+......     +.+...+.-.+   ....+....+|+.... .. +.
T Consensus        76 p~~I~alas~~~~vy~A~g~~i~~~~rgk~i~~~~~~~~-----a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l  150 (910)
T KOG1539|consen   76 PDKITALASDKDYVYVASGNKIYAYARGKHIRHTTLLHG-----AKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYL  150 (910)
T ss_pred             CCceEEEEecCceEEEecCcEEEEEEccceEEEEecccc-----ceEEEEeeecceEEEEEccCcEEEEEeccccccccc
Confidence            456778888999998888888877777755444332111     22222211111   1223455667776663 11 12


Q ss_pred             eeeeeecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          504 EANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafsp--dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      ....++...+.|+++. +|  .=+.|+.|+.+|.+.||++.+++.+.++.++...|+++.=+|--..++.|..+|+|.|+
T Consensus       151 ~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Viif  229 (910)
T KOG1539|consen  151 QSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIF  229 (910)
T ss_pred             cceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEE
Confidence            2223333333377764 44  33678999999999999999999999999999999999999988899999999999999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEc
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~  657 (792)
                      ++.. ++.+.+|+...+.|++++|..||..++++++..|.+.+||++..+.+....    +.+....|.+....+++++.
T Consensus       230 NlK~-dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~  308 (910)
T KOG1539|consen  230 NLKF-DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGA  308 (910)
T ss_pred             Eccc-CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccC
Confidence            9998 778888885569999999999999999999999999999999887665443    23344444444444444444


Q ss_pred             CCeEEEE--E----------------------------------------------------------------------
Q 003842          658 ENVVSIL--D----------------------------------------------------------------------  665 (792)
Q Consensus       658 dg~I~i~--D----------------------------------------------------------------------  665 (792)
                      |+.+++|  |                                                                      
T Consensus       309 DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~  388 (910)
T KOG1539|consen  309 DNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVF  388 (910)
T ss_pred             CCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccccc
Confidence            4433333  2                                                                      


Q ss_pred             ----------------------------------------CCCCeE-EEEec-----CCCCCeEEEEEcCCCCEEEEEeC
Q 003842          666 ----------------------------------------AETQAC-RLSLQ-----GHTKPIDSVCWDPSGELLASVSE  699 (792)
Q Consensus       666 ----------------------------------------~~t~~~-~~~l~-----~h~~~V~sv~~spdg~~Las~s~  699 (792)
                                                              .++... .+.+.     .....+++++.++.|++.+.|+.
T Consensus       389 ~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S  468 (910)
T KOG1539|consen  389 STEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS  468 (910)
T ss_pred             chhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEecc
Confidence                                                    111111 00010     01135777888888888888776


Q ss_pred             C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE---------------------
Q 003842          700 D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT---------------------  757 (792)
Q Consensus       700 d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~---------------------  757 (792)
                      . .|-+|++.+|-.......-..|...|+.++...-++.+++++.+|-+.+||+.+...                     
T Consensus       469 ~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l  548 (910)
T KOG1539|consen  469 KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDL  548 (910)
T ss_pred             CCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhh
Confidence            6 888998887733222222357889999999999999999999999999999976431                     


Q ss_pred             --------------------E-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          758 --------------------M-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       758 --------------------~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                                          + .+.+|.+.|++++|||||++|++++.|++|++||
T Consensus       549 ~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD  604 (910)
T KOG1539|consen  549 LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD  604 (910)
T ss_pred             hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence                                0 2346899999999999999999999999999998

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.1e-23  Score=205.98  Aligned_cols=246  Identities=22%  Similarity=0.302  Sum_probs=202.0

Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceeEEeccCCCCEEEEEECC--CCCeEEEEeCCCcEEEEeC
Q 003842          509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~---~~~~~l~~h~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWdl  583 (792)
                      ..|.+.|..+..+-.|++|||++.|++|+||.+.+.   ..+.+|.+|.++|+.++|..  -|.+||++++||.|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            478999999999999999999999999999999754   56888999999999999976  7899999999999999999


Q ss_pred             CCCC-ceeEEecccCCCeEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCC------eeEEEeeCCeeEEEEecC---C---
Q 003842          584 DNPG-YSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNG------SCTRVFKGGTAQMRFQPH---L---  649 (792)
Q Consensus       584 ~s~~-~~i~~~~~h~~~V~sl~fspd~~-~ll~sgs~Dg~I~iwdl~~~------~~~~~~~~~~~~v~~sp~---~---  649 (792)
                      +++. .....+..|...|++|+|.|.+- .+|++++.||.|.|++++..      +....+..++++++|.|.   +   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            8743 23445668999999999998753 45678889999999998765      122234557788888876   3   


Q ss_pred             --------CEEEEEEcCCeEEEEECCCC--eEEEEecCCCCCeEEEEEcCCC----CEEEEEeCC-eEEEEECCCCCCcc
Q 003842          650 --------GRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSG----ELLASVSED-SVRVWTVGSGSEGE  714 (792)
Q Consensus       650 --------~~lla~s~dg~I~i~D~~t~--~~~~~l~~h~~~V~sv~~spdg----~~Las~s~d-~I~IwDl~s~~~~~  714 (792)
                              .+|++++.|+.|+||+..++  +...++.+|.+.|+.++|.|.-    .+|++|+.| +|.||..+...+.-
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w  247 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW  247 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence                    56999999999999999886  3445588999999999999954    489999999 99999987432323


Q ss_pred             eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003842          715 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       715 ~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~  754 (792)
                      ....+......+..+.|+..|+.|++++.|+.|.+|.-..
T Consensus       248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            3333444566799999999999999999999999997543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=3.6e-22  Score=211.99  Aligned_cols=333  Identities=19%  Similarity=0.256  Sum_probs=250.2

Q ss_pred             eeEeCCCcchhhcccccccCCCCCCceee-eccCCCCCC---CCCCCcceeccCCcceeeeeeeecCC-CCeEEEEEcCC
Q 003842          449 QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDDTDP---RDAGGRGMDVSQGFSFKEANSVRAST-SKVICCHFSSD  523 (792)
Q Consensus       449 ~lWD~~tg~~~~~~~~~~~~g~~d~~v~~-~l~~d~~~~---~d~~~~~~d~~~~~~~~~~~~l~~H~-~~V~~lafspd  523 (792)
                      .+||+..+....++...     .+....+ |...+....   ..+..-.|+...+.-++....++.+. ..|.|++|.++
T Consensus       183 SVWdWqk~~~~~~vk~s-----ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en  257 (626)
T KOG2106|consen  183 SVWDWQKKAKLGPVKTS-----NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN  257 (626)
T ss_pred             chhhchhhhccCcceec-----cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCC
Confidence            67999887765544421     1111222 222222221   12233467777777677777776553 67999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc----------e----
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----------S----  589 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~----------~----  589 (792)
                      |. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.+| +|+.|..|..||-+-...          .    
T Consensus       258 gd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv  335 (626)
T KOG2106|consen  258 GD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTV  335 (626)
T ss_pred             CC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEE
Confidence            95 6799999999999998888888777999999999999999554 599999999998431000          0    


Q ss_pred             -------------------------eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEE
Q 003842          590 -------------------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR  644 (792)
Q Consensus       590 -------------------------i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~  644 (792)
                                               .....+|....+.++.+|+.+ .+++|+.|+.+++|+-......+.+..+..++.
T Consensus       336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~  414 (626)
T KOG2106|consen  336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWNDHKLEWTKIIEDPAECAD  414 (626)
T ss_pred             ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEccCCceeEEEEecCceeEee
Confidence                                     012236788889999999965 556999999999999444445567788899999


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC
Q 003842          645 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG  723 (792)
Q Consensus       645 ~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~  723 (792)
                      |+|.+ .+++|+..|...++|.++...+..-.. ..++++++|+|+|.+||.++.| .|+||.+..... +..+.-.++.
T Consensus       415 fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~g  491 (626)
T KOG2106|consen  415 FHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR-KYSRVGKCSG  491 (626)
T ss_pred             ccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc-EEEEeeeecC
Confidence            99998 999999999999999999666655554 8899999999999999999999 999999975432 3333344555


Q ss_pred             CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-------------------EEcccCCCeEEEEEeCCCCEEEEEeC
Q 003842          724 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-------------------TLTAHEGLIAALAVSTETGYVASASH  784 (792)
Q Consensus       724 ~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-------------------~~~~h~~~V~sl~fspdg~~LaSgs~  784 (792)
                      .+|+.+.|++|+.+|.+-+.|-.|..|....-+.+                   ....+...|..++-+.+.+++|+|.+
T Consensus       492 s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd  571 (626)
T KOG2106|consen  492 SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDD  571 (626)
T ss_pred             ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhcccc
Confidence            89999999999999999999999999954332111                   11235556777777888899999999


Q ss_pred             CCcEEEeC
Q 003842          785 DKFVKLWK  792 (792)
Q Consensus       785 DG~I~IWd  792 (792)
                      .|+|++|.
T Consensus       572 ~g~v~lf~  579 (626)
T KOG2106|consen  572 FGKVHLFS  579 (626)
T ss_pred             CceEEEEc
Confidence            99999984

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.6e-23  Score=216.45  Aligned_cols=282  Identities=18%  Similarity=0.266  Sum_probs=232.7

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCC
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~--t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s~  586 (792)
                      ...+.|+|+.|+|...+|++++.|+.++||-++  +...+..+.-...+|.+.+|.|+|. .+++++....+++||+.+.
T Consensus       211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            456889999999999999999999999999886  3445666777788999999999999 8999999999999999873


Q ss_pred             Cc-eeEEecccC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcCCeEE
Q 003842          587 GY-SLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVS  662 (792)
Q Consensus       587 ~~-~i~~~~~h~-~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~dg~I~  662 (792)
                      .. .+....++. ..+..+.++++++ +|+..+..|.|.+....+++.+..++  +.+..++|+.++..|++++.+|.|+
T Consensus       291 k~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~  369 (514)
T KOG2055|consen  291 KVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVY  369 (514)
T ss_pred             ccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEE
Confidence            21 122222333 4577788899987 56688899999999999999887764  6788899999999999999999999


Q ss_pred             EEECCCCeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC---CCcceEEEeecCCCceEEEEEeCCCCE
Q 003842          663 ILDAETQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSG---SEGECVHELSCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       663 i~D~~t~~~~~~l~~h~-~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~---~~~~~i~~~~~~~~~i~si~fspdg~~  737 (792)
                      +||++...+++.+.... -.-+++|.+.++.|||+|++. .|.|||..+.   ..++++..+..-...|+++.|++|...
T Consensus       370 v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi  449 (514)
T KOG2055|consen  370 VWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI  449 (514)
T ss_pred             EEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence            99999999998887432 234678888999999999988 9999997543   345677777777788999999999999


Q ss_pred             EEEEEcC--CeEEEEECCCCcEE-EEc---ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          738 LLVIGCY--QSLELWNMSENKTM-TLT---AHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       738 L~sgs~d--g~I~IwDl~~~~~~-~~~---~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |+.++..  ..+++..+.+.... .+.   ..-+.|+||+|+|.+.+||.|.++|.|.+|+
T Consensus       450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK  510 (514)
T ss_pred             hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence            8888764  58999988877766 222   2345799999999999999999999999996

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=3.9e-23  Score=223.09  Aligned_cols=288  Identities=20%  Similarity=0.243  Sum_probs=230.7

Q ss_pred             CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC--eEEEEeCCC
Q 003842          499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDK  576 (792)
Q Consensus       499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~--~Lasgs~Dg  576 (792)
                      .|+..+...++||++.|.||...|.|.+||+|+.||+|+||.+.+|++++++.- .+.|.||+|+|.+.  .||++-.+.
T Consensus       387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~  465 (733)
T KOG0650|consen  387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGEC  465 (733)
T ss_pred             CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCc
Confidence            456667778999999999999999999999999999999999999999998874 45899999999765  344443322


Q ss_pred             cEEEEeC---------------------------------CC---CCceeEEecccCCCeEEEEEcCCCCeEEEEEeC--
Q 003842          577 TVRVWDA---------------------------------DN---PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--  618 (792)
Q Consensus       577 ~V~IWdl---------------------------------~s---~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~--  618 (792)
                       +.|-+.                                 ..   ...-++....|...|..|.||..|+++..++..  
T Consensus       466 -~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~  544 (733)
T KOG0650|consen  466 -VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG  544 (733)
T ss_pred             -eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence             333332                                 11   011134445688999999999999877655543  


Q ss_pred             CCcEEEEEcCCCeeEEEe---eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEE
Q 003842          619 DGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA  695 (792)
Q Consensus       619 Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~La  695 (792)
                      ...|.|+++...+...-|   ++.+.++.|+|...++++++ ...|+|||+...+.+..+.....+|..++++|.|..|+
T Consensus       545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli  623 (733)
T KOG0650|consen  545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI  623 (733)
T ss_pred             cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence            356889999877655444   56788899999988877765 47899999999888888887888999999999999999


Q ss_pred             EEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC------CCC-cEE---EEcccC
Q 003842          696 SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM------SEN-KTM---TLTAHE  764 (792)
Q Consensus       696 s~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl------~~~-~~~---~~~~h~  764 (792)
                      .++.| .++.||+.-..  +....+..|...+++++|++....+++|+.||++.||.-      -.+ .++   .+.+|.
T Consensus       624 ~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~  701 (733)
T KOG0650|consen  624 LGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE  701 (733)
T ss_pred             EecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence            99999 99999997543  567778889999999999999999999999999988842      222 222   566776


Q ss_pred             CC----eEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          765 GL----IAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       765 ~~----V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ..    |..+.|+|.--+|++++.||+|++|
T Consensus       702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eecccceEeecccCCCceEEecCCCceEEee
Confidence            65    8999999999999999999999999

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.1e-22  Score=204.70  Aligned_cols=255  Identities=20%  Similarity=0.323  Sum_probs=198.7

Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC----CCceeEEeccCCCCEEEEEECC--CCCeEEEEeCCCcEEEEe
Q 003842          509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~----t~~~~~~l~~h~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWd  582 (792)
                      .+|.+-|.|+.|+..|+.+|+|+.|.+|+|||.+    +..+....+.|.+.|..|.|.+  -|..+|++++|++|.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            4788999999999999999999999999999964    3466777889999999999976  588999999999999997


Q ss_pred             CCCC--------CceeEEecccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEE
Q 003842          583 ADNP--------GYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL  653 (792)
Q Consensus       583 l~s~--------~~~i~~~~~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll  653 (792)
                      -...        -....++......|++|+|.|.. ...+++++.||.||||+.-.-..+..                  
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~------------------  151 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ------------------  151 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc------------------
Confidence            6321        12345666788899999999863 23577899999999998754322221                  


Q ss_pred             EEEcCCeEEEEECCCC--eEEEEecCCCCCeEEEEEcCC---CCEEEEEeCC------eEEEEECCCCC-CcceEEEeec
Q 003842          654 AAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPS---GELLASVSED------SVRVWTVGSGS-EGECVHELSC  721 (792)
Q Consensus       654 a~s~dg~I~i~D~~t~--~~~~~l~~h~~~V~sv~~spd---g~~Las~s~d------~I~IwDl~s~~-~~~~i~~~~~  721 (792)
                                |.+...  ..+.....+..+..||.|++.   ..+|+.|+++      .++||...... +...+.++.+
T Consensus       152 ----------W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d  221 (361)
T KOG2445|consen  152 ----------WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD  221 (361)
T ss_pred             ----------chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence                      111100  000111235566789999974   3488888877      79999887654 5677788889


Q ss_pred             CCCceEEEEEeCC----CCEEEEEEcCCeEEEEECCCCc--------------------EE-EEcccCCCeEEEEEeCCC
Q 003842          722 NGNKFHSCVFHPT----YPSLLVIGCYQSLELWNMSENK--------------------TM-TLTAHEGLIAALAVSTET  776 (792)
Q Consensus       722 ~~~~i~si~fspd----g~~L~sgs~dg~I~IwDl~~~~--------------------~~-~~~~h~~~V~sl~fspdg  776 (792)
                      +..+|+.++|.|+    ...|++++.|| |+||.++...                    .+ .+.+|.+.|+.+.|+-.|
T Consensus       222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG  300 (361)
T KOG2445|consen  222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG  300 (361)
T ss_pred             CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence            9999999999995    45789999999 9999987411                    12 466899999999999999


Q ss_pred             CEEEEEeCCCcEEEeC
Q 003842          777 GYVASASHDKFVKLWK  792 (792)
Q Consensus       777 ~~LaSgs~DG~I~IWd  792 (792)
                      .+|++.|+||+||+|+
T Consensus       301 tiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  301 TILSSTGDDGCVRLWK  316 (361)
T ss_pred             eEEeecCCCceeeehh
Confidence            9999999999999996

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=1.4e-22  Score=211.87  Aligned_cols=251  Identities=19%  Similarity=0.241  Sum_probs=217.4

Q ss_pred             CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcE
Q 003842          499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV  578 (792)
Q Consensus       499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V  578 (792)
                      +.+-..+..++||...|+.+.|+++...+++++.|..|+||..........+..|..+|+.+..+|.|.||++++.||+.
T Consensus       248 ~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w  327 (506)
T KOG0289|consen  248 KPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTW  327 (506)
T ss_pred             cchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceE
Confidence            34445678899999999999999999999999999999999999888888899999999999999999999999999999


Q ss_pred             EEEeCCCCCceeEEecc--cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEE
Q 003842          579 RVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYL  653 (792)
Q Consensus       579 ~IWdl~s~~~~i~~~~~--h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll  653 (792)
                      .+.|+++ +..+.....  ..-.+++++||||| .+|.+|..||.|+|||+.+...+..|.   +++..+.|+.+|-+++
T Consensus       328 ~Fsd~~~-g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~La  405 (506)
T KOG0289|consen  328 AFSDISS-GSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLA  405 (506)
T ss_pred             EEEEccC-CcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEE
Confidence            9999998 444444332  23458999999997 588899999999999999998887775   4678899999999999


Q ss_pred             EEEcCCeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 003842          654 AAAAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF  731 (792)
Q Consensus       654 a~s~dg~I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~f  731 (792)
                      +++.|+.|++||++..+...++.. ...+|.+++|+..|.+|+.++.+ .|++++-.+ +.+.++..+..|.+..+.+.|
T Consensus       406 t~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~F  484 (506)
T KOG0289|consen  406 TAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRF  484 (506)
T ss_pred             EEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeee
Confidence            999999999999999887766654 23479999999999999999888 888887554 456788888888888999999


Q ss_pred             eCCCCEEEEEEcCCeEEEEEC
Q 003842          732 HPTYPSLLVIGCYQSLELWNM  752 (792)
Q Consensus       732 spdg~~L~sgs~dg~I~IwDl  752 (792)
                      .....++++++.|..++++.+
T Consensus       485 g~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  485 GEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             cccceEEeeccchhheEEeec
Confidence            999999999999999888864

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.3e-23  Score=217.31  Aligned_cols=257  Identities=19%  Similarity=0.213  Sum_probs=209.6

Q ss_pred             CCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeE
Q 003842          490 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL  569 (792)
Q Consensus       490 ~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~L  569 (792)
                      ...+|.+.+...+.   ...--.++|.|++-+|+|.+|+.|+..|.|++|.+.+|+.+..+..|-..|+|+.|+.|+.+|
T Consensus        62 ~l~vw~i~k~~~~~---q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i  138 (476)
T KOG0646|consen   62 LLHVWEILKKDQVV---QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI  138 (476)
T ss_pred             cccccccCchhhhh---hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence            45566666554333   222336789999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCC--------CCceeEEecccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEe--eC
Q 003842          570 ATSSFDKTVRVWDADN--------PGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVF--KG  638 (792)
Q Consensus       570 asgs~Dg~V~IWdl~s--------~~~~i~~~~~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~  638 (792)
                      ++|+.||.|.+|++..        ..+++..|..|.-+|+++...+.+ +-.+++++.|.+|++||+..+.++..+  ..
T Consensus       139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~  218 (476)
T KOG0646|consen  139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS  218 (476)
T ss_pred             EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence            9999999999998742        235778899999999999987652 345779999999999999999988764  56


Q ss_pred             CeeEEEEecCCCEEEEEEcCCeEEEEECCCC----------------eEEEEecCCCC--CeEEEEEcCCCCEEEEEeCC
Q 003842          639 GTAQMRFQPHLGRYLAAAAENVVSILDAETQ----------------ACRLSLQGHTK--PIDSVCWDPSGELLASVSED  700 (792)
Q Consensus       639 ~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~----------------~~~~~l~~h~~--~V~sv~~spdg~~Las~s~d  700 (792)
                      .+.+++++|.+..+++|+.+|.|.+.++...                ..+..+.+|..  .|+|++++-||.+|++|+.|
T Consensus       219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d  298 (476)
T KOG0646|consen  219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED  298 (476)
T ss_pred             cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence            7788999999999999999999999887543                23455678887  99999999999999999999


Q ss_pred             -eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEC
Q 003842          701 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNM  752 (792)
Q Consensus       701 -~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl  752 (792)
                       .|+|||+.+.   .+++++....++|+.+.+.|-.+.++.+... ..+-+|++
T Consensus       299 g~VcvWdi~S~---Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  299 GKVCVWDIYSK---QCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             CCEEEEecchH---HHHHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence             9999999776   7777777677889888887765544443222 23444443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=2.8e-21  Score=206.76  Aligned_cols=275  Identities=13%  Similarity=0.088  Sum_probs=201.6

Q ss_pred             CCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCC
Q 003842          488 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM  566 (792)
Q Consensus       488 d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~L-asgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg  566 (792)
                      +.....|+...+   +.+..+..+. .+.+++|+++|+++ ++++.++.|++||+.+++.+..+..+.. +..++|+|++
T Consensus        10 d~~v~~~d~~t~---~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g   84 (300)
T TIGR03866        10 DNTISVIDTATL---EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNG   84 (300)
T ss_pred             CCEEEEEECCCC---ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCC
Confidence            445566666544   3445555554 47789999999976 5667889999999999988877765543 5788999999


Q ss_pred             CeEEEE-eCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCC-CcEEEEEcCCCeeEEEee--CCeeE
Q 003842          567 PRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFK--GGTAQ  642 (792)
Q Consensus       567 ~~Lasg-s~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D-g~I~iwdl~~~~~~~~~~--~~~~~  642 (792)
                      +.|+++ +.|+.|++||+.+ ...+..+. +...+.+++|+|++..++ ++..+ ..+.+||.++++.+..+.  .....
T Consensus        85 ~~l~~~~~~~~~l~~~d~~~-~~~~~~~~-~~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (300)
T TIGR03866        85 KILYIANEDDNLVTVIDIET-RKVLAEIP-VGVEPEGMAVSPDGKIVV-NTSETTNMAHFIDTKTYEIVDNVLVDQRPRF  161 (300)
T ss_pred             CEEEEEcCCCCeEEEEECCC-CeEEeEee-CCCCcceEEECCCCCEEE-EEecCCCeEEEEeCCCCeEEEEEEcCCCccE
Confidence            977655 5689999999987 44555554 234578899999987655 44444 467788999887765432  34567


Q ss_pred             EEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEecCCC-----C--CeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCC
Q 003842          643 MRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHT-----K--PIDSVCWDPSGELLASV-SED-SVRVWTVGSGSE  712 (792)
Q Consensus       643 v~~sp~~~~lla~s-~dg~I~i~D~~t~~~~~~l~~h~-----~--~V~sv~~spdg~~Las~-s~d-~I~IwDl~s~~~  712 (792)
                      +.|++++..+++++ .++.|++||+++++.+..+..+.     .  ....++|+|++++++++ +.+ .|.+||++++  
T Consensus       162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~--  239 (300)
T TIGR03866       162 AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY--  239 (300)
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC--
Confidence            89999999887665 48999999999998776654221     1  23468899999986554 334 8999999765  


Q ss_pred             cceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEEcccCCCeEEEEEeC
Q 003842          713 GECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLTAHEGLIAALAVST  774 (792)
Q Consensus       713 ~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fsp  774 (792)
                       +.+..+. +...+.+++|+|++.+|++++ .++.|++||+.+++++.........+.++|+|
T Consensus       240 -~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       240 -EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP  300 (300)
T ss_pred             -cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence             3333332 345788999999999998874 58999999999999874444556678888865

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=1e-21  Score=208.54  Aligned_cols=335  Identities=18%  Similarity=0.278  Sum_probs=247.1

Q ss_pred             eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEE
Q 003842          449 QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLA  528 (792)
Q Consensus       449 ~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~La  528 (792)
                      .+|+++.+.+.+....+......-.....|+..++....|..+.+.-+.++ ..+..+....|.+.|.|++.-.+|.+|-
T Consensus       225 ~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~-~~~~~k~~~aH~ggv~~L~~lr~GtllS  303 (626)
T KOG2106|consen  225 YFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKG-TNRISKQVHAHDGGVFSLCMLRDGTLLS  303 (626)
T ss_pred             EEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCC-CceEEeEeeecCCceEEEEEecCccEee
Confidence            569999998877777665544322223345666666566655544333333 3344445559999999999999997665


Q ss_pred             EEeCCCeEEEEECCCCcee------------E-----------------------------EeccCCCCEEEEEECCCCC
Q 003842          529 TGGHDKKAVLWHTDTLKSK------------T-----------------------------NLEEHSSLITDVRFSPSMP  567 (792)
Q Consensus       529 sgs~Dg~I~vWdl~t~~~~------------~-----------------------------~l~~h~~~V~~i~fspdg~  567 (792)
                       |+.|.+|..||-. .+.+            +                             ...+|.+..+.++.+|+..
T Consensus       304 -GgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~  381 (626)
T KOG2106|consen  304 -GGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN  381 (626)
T ss_pred             -cCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh
Confidence             9999999999832 1110            0                             1124788889999999999


Q ss_pred             eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--eCCeeEEEE
Q 003842          568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRF  645 (792)
Q Consensus       568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~  645 (792)
                      .|+|++.|+.|++|+ +  .+.+.+. ....++.|++|+|.|  .++.|...|...+.|+++...+...  ...+++++|
T Consensus       382 q~~T~gqdk~v~lW~-~--~k~~wt~-~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~y  455 (626)
T KOG2106|consen  382 QLLTCGQDKHVRLWN-D--HKLEWTK-IIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRY  455 (626)
T ss_pred             heeeccCcceEEEcc-C--CceeEEE-EecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEE
Confidence            999999999999999 3  2332222 245778999999998  6779999999999999997766554  356788999


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCeE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe---
Q 003842          646 QPHLGRYLAAAAENVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL---  719 (792)
Q Consensus       646 sp~~~~lla~s~dg~I~i~D~~t~~~--~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~---  719 (792)
                      +|++..+++++.|+.|+||-+.....  ...-+.+..+|+.+.|++|+.+|.+.+.| .|..|..........++.+   
T Consensus       456 sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~  535 (626)
T KOG2106|consen  456 SPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWA  535 (626)
T ss_pred             cCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeee
Confidence            99999999999999999998865432  22223355899999999999999999999 9999954332221111111   


Q ss_pred             ------------ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE----EEEcccCCCeEEEEEeCCCCEEEEEe
Q 003842          720 ------------SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT----MTLTAHEGLIAALAVSTETGYVASAS  783 (792)
Q Consensus       720 ------------~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~----~~~~~h~~~V~sl~fspdg~~LaSgs  783 (792)
                                  ..+...+..++-+.+.+.+++|...|+|++|...-...    ..+.+|.+.|++++|..+..+|++.+
T Consensus       536 t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg  615 (626)
T KOG2106|consen  536 TYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTG  615 (626)
T ss_pred             eeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecC
Confidence                        11233455666677888899999999999998765433    36779999999999998888888888


Q ss_pred             CCCcEEEeC
Q 003842          784 HDKFVKLWK  792 (792)
Q Consensus       784 ~DG~I~IWd  792 (792)
                      .|..|..|+
T Consensus       616 ~D~Si~qW~  624 (626)
T KOG2106|consen  616 KDTSIMQWR  624 (626)
T ss_pred             CCceEEEEE
Confidence            999999996

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=1.1e-22  Score=223.49  Aligned_cols=253  Identities=20%  Similarity=0.351  Sum_probs=217.7

Q ss_pred             CCCCCCCcceeccCCcceeeeeeeecCCCCeEE-EEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEE
Q 003842          485 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVIC-CHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF  562 (792)
Q Consensus       485 ~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~-lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~f  562 (792)
                      .++|++.++|+-.. ..+.+...+.+|.+-|.+ ++|.+ ++-.|++|+.|++|.+|......+..++.+|...|+|+..
T Consensus        31 ~sRd~t~~vw~~~~-~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~  109 (745)
T KOG0301|consen   31 GSRDGTVKVWAKKG-KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSI  109 (745)
T ss_pred             cCCCCceeeeeccC-cccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeec
Confidence            45566777776533 345566778899999988 88886 5557999999999999999999999999999999999998


Q ss_pred             CCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeE
Q 003842          563 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ  642 (792)
Q Consensus       563 spdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~  642 (792)
                      ..++. |++||.|.+++||.+.   .+...+.+|...|+++++.|++  .++||+.|.+|++|.-  ++++++|.++..+
T Consensus       110 ~~~~~-~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~  181 (745)
T KOG0301|consen  110 GEDGT-LISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDC  181 (745)
T ss_pred             CCcCc-eEecccccceEEecch---hhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccchhh
Confidence            88876 9999999999999885   4566689999999999999986  5669999999999986  7788888887655


Q ss_pred             E---EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE
Q 003842          643 M---RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE  718 (792)
Q Consensus       643 v---~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~  718 (792)
                      +   ++.++ ..+++++.||.|++|++ +++++.++.+|...|.+++...++..|+++++| +++||+..     .+...
T Consensus       182 VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q~  254 (745)
T KOG0301|consen  182 VRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQV  254 (745)
T ss_pred             eeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEEE
Confidence            4   45444 67999999999999999 889999999999999999988899999999999 99999975     67777


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003842          719 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       719 ~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~  754 (792)
                      +......|+++.+-++|+ |++|++||.|+||..+.
T Consensus       255 I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  255 ITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            777777899999988887 89999999999998874

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=5.1e-23  Score=228.24  Aligned_cols=273  Identities=20%  Similarity=0.368  Sum_probs=213.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceeEEecc---CCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCC
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEE---HSSLITDVRFSP-SMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~----~~~~~l~~---h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      .+.+|...++-.-|++++.. .++||.+...    ++...++.   -...+.+|.|.. +.++|||++..|.|.+||+..
T Consensus        41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence            45667777888888887643 5677766432    22222221   122356778875 466999999999999999986


Q ss_pred             --CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCE-EEEEEcCC
Q 003842          586 --PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR-YLAAAAEN  659 (792)
Q Consensus       586 --~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~-lla~s~dg  659 (792)
                        ..+.+..|..|...|++++|++...++|++|+.||+|++||++..+....+.+   .+..+.|+|.... ++++...|
T Consensus       120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG  199 (839)
T KOG0269|consen  120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG  199 (839)
T ss_pred             cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence              34556688899999999999999999999999999999999999888777654   4667899987654 55666678


Q ss_pred             eEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003842          660 VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       660 ~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~  737 (792)
                      .+.+||++.. ++.+.+.+|.++|.|+.|+|++.+||+|+.| .|+|||+.+... ..+..+. ...++..+.|-|+..+
T Consensus       200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~  277 (839)
T KOG0269|consen  200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSY  277 (839)
T ss_pred             eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccc
Confidence            9999999976 6778888999999999999999999999999 999999986533 3333332 3568999999998876


Q ss_pred             EEEEEc---CCeEEEEECCCCcEE--EEcccCCCeEEEEEeC-CCCEEEEEeCCCcEE
Q 003842          738 LLVIGC---YQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVK  789 (792)
Q Consensus       738 L~sgs~---dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fsp-dg~~LaSgs~DG~I~  789 (792)
                      .++.+.   |-.|+|||++..-+-  ++..|...++.++|.. |...|.+|+.||.|.
T Consensus       278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence            554433   558999999876544  7889999999999965 556788999999874

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=5.4e-22  Score=198.33  Aligned_cols=281  Identities=22%  Similarity=0.349  Sum_probs=218.7

Q ss_pred             eeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce----------eE-----EeccCCCCEEEEEECC-CCCeE
Q 003842          507 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS----------KT-----NLEEHSSLITDVRFSP-SMPRL  569 (792)
Q Consensus       507 ~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~----------~~-----~l~~h~~~V~~i~fsp-dg~~L  569 (792)
                      ..+.|.+.|.++.+.+ .|+|+++|+.||.|.|||+++...          +.     .-.+|...|.++.|.| |...|
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            3467889999999998 789999999999999999975321          11     1125888999999999 56689


Q ss_pred             EEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCC--CeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEE
Q 003842          570 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK--DDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMR  644 (792)
Q Consensus       570 asgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~--~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~  644 (792)
                      .+++.|.+++|||.++ ......|+ ..+.|++-+++|-.  ..||++|..|-.|++.|+.+|.+...+.+   ++..+.
T Consensus       118 tssSFDhtlKVWDtnT-lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNT-LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE  195 (397)
T ss_pred             ecccccceEEEeeccc-ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence            9999999999999998 44444444 56778888887743  46888999999999999999999888765   578899


Q ss_pred             EecCCCEEEE-EEcCCeEEEEECCCC-eEEEEe--------------cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 003842          645 FQPHLGRYLA-AAAENVVSILDAETQ-ACRLSL--------------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTV  707 (792)
Q Consensus       645 ~sp~~~~lla-~s~dg~I~i~D~~t~-~~~~~l--------------~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl  707 (792)
                      |+|...++++ ++.||.|++||++.. .+...+              ..|.+.|..++|..++.++++++.| .+++|+.
T Consensus       196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence            9999988765 566999999999865 333333              2466789999999999999999988 9999999


Q ss_pred             CCCCCcceEEEeecCC----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 003842          708 GSGSEGECVHELSCNG----NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA  782 (792)
Q Consensus       708 ~s~~~~~~i~~~~~~~----~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSg  782 (792)
                      .+++....-.....+.    ..+. +. +-+...++..-.++.+.++++-++..+ .+..|...|.|.+|-++-..+.++
T Consensus       276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg  353 (397)
T KOG4283|consen  276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG  353 (397)
T ss_pred             ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence            8875422111111111    1122 22 445555666666789999999998877 677898899999999998899999


Q ss_pred             eCCCcEEEe
Q 003842          783 SHDKFVKLW  791 (792)
Q Consensus       783 s~DG~I~IW  791 (792)
                      ..|+.|..|
T Consensus       354 ~~d~ni~~w  362 (397)
T KOG4283|consen  354 DMNGNIYMW  362 (397)
T ss_pred             ccCCccccc
Confidence            999999988

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=4.6e-23  Score=201.54  Aligned_cols=241  Identities=24%  Similarity=0.424  Sum_probs=200.8

Q ss_pred             ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC--ceeEEecccCCCeEEEEE-cCCCCeEEEEEeCCCcEEEEEc
Q 003842          551 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDF-HPNKDDLICSCDGDGEIRYWSI  627 (792)
Q Consensus       551 ~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~--~~i~~~~~h~~~V~sl~f-spd~~~ll~sgs~Dg~I~iwdl  627 (792)
                      ..|.+.|.++...--|++|+|++.|++|+|+.+++.+  ..+.++.+|.++|..++| +|.-..+|++|+.||.|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            4688889998888899999999999999999999866  678899999999999999 5665679999999999999999


Q ss_pred             CCCeeEEE-----eeCCeeEEEEecCC--CEEEEEEcCCeEEEEECCCC---eEEEEecCCCCCeEEEEEcCC---C---
Q 003842          628 NNGSCTRV-----FKGGTAQMRFQPHL--GRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPS---G---  691 (792)
Q Consensus       628 ~~~~~~~~-----~~~~~~~v~~sp~~--~~lla~s~dg~I~i~D~~t~---~~~~~l~~h~~~V~sv~~spd---g---  691 (792)
                      ..+.-.+.     ++..+++++|.|.+  -.|+++++||.|.|++.+..   ........|.-.|++++|.|.   |   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            88864433     34567889888865  45677888999999988764   334455679999999999995   4   


Q ss_pred             --------CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCC---
Q 003842          692 --------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSEN---  755 (792)
Q Consensus       692 --------~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg----~~L~sgs~dg~I~IwDl~~~---  755 (792)
                              +.|++|+.| .|+||+..++ ..+.-+.+..|...++.++|.|.-    .+|++++.||+|.||..+..   
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~  246 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP  246 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence                    579999999 9999999876 445555689999999999999964    47999999999999977632   


Q ss_pred             -cEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          756 -KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       756 -~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                       +...+......++.+.|+..|.+|+.++.|+.|.+|+
T Consensus       247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence             1224445678899999999999999999999999995

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=6.6e-23  Score=216.93  Aligned_cols=234  Identities=17%  Similarity=0.321  Sum_probs=201.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCce
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS  589 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~--~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~  589 (792)
                      ...|.+|.+.+||+.|++|++-.+|.|||+...  .....+....-.+.+++.+||.++.++++.||.|.|||+.+ ...
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn-q~~  543 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN-QTL  543 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc-cee
Confidence            456899999999999999999999999999754  44445555556788899999999999999999999999998 788


Q ss_pred             eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE--EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003842          590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE  667 (792)
Q Consensus       590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~--~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~  667 (792)
                      ++.|.+|.+.+.||.++++|.+|. +|+-|.+||.||+++++.+.  .|...+.++.++|.+.++++|-.++.+.|....
T Consensus       544 VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s  622 (705)
T KOG0639|consen  544 VRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS  622 (705)
T ss_pred             eecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence            999999999999999999987655 99999999999999988664  466788899999999999999999999998875


Q ss_pred             CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003842          668 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS  746 (792)
Q Consensus       668 t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~  746 (792)
                      .. ..+.+.-|+..|.++.|.+.|+++++.+.| .+..|...-+   ..+...+ ....|.+|.++.|.++|++|+.|..
T Consensus       623 kp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkk  697 (705)
T KOG0639|consen  623 KP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKK  697 (705)
T ss_pred             Cc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeecc-ccCcceeeeeccCceEEEecCCCcc
Confidence            44 345566699999999999999999999999 8999998666   3343333 3567999999999999999999998


Q ss_pred             EEEEEC
Q 003842          747 LELWNM  752 (792)
Q Consensus       747 I~IwDl  752 (792)
                      ..||.+
T Consensus       698 ATVYeV  703 (705)
T KOG0639|consen  698 ATVYEV  703 (705)
T ss_pred             eEEEEE
Confidence            888865

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.90  E-value=2.1e-22  Score=214.19  Aligned_cols=236  Identities=17%  Similarity=0.276  Sum_probs=190.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe------------ccCCCCEEEEEECCCCC-eEEEEeCCCcE
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL------------EEHSSLITDVRFSPSMP-RLATSSFDKTV  578 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l------------~~h~~~V~~i~fspdg~-~Lasgs~Dg~V  578 (792)
                      ...|.++.|++.|..|++.+....++|+|-+........            ++|...++|.+|+|+.+ .|+|++.||++
T Consensus       214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl  293 (641)
T KOG0772|consen  214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL  293 (641)
T ss_pred             ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence            345999999999999999888889999997755544433            46999999999999655 79999999999


Q ss_pred             EEEeCCCCCceeEEec-----ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE------eeC--CeeEEEE
Q 003842          579 RVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------FKG--GTAQMRF  645 (792)
Q Consensus       579 ~IWdl~s~~~~i~~~~-----~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~------~~~--~~~~v~~  645 (792)
                      ||||+++.......+.     +..-.++.++|+++++ +||+|+.||.|.+|+.........      +..  .++++.|
T Consensus       294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F  372 (641)
T KOG0772|consen  294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF  372 (641)
T ss_pred             EEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence            9999998555444443     3345789999999987 477999999999999865332211      222  6889999


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCC-eEEEEecC--CCCCeEEEEEcCCCCEEEEEeC-------CeEEEEECCCCCCcce
Q 003842          646 QPHLGRYLAAAAENVVSILDAETQ-ACRLSLQG--HTKPIDSVCWDPSGELLASVSE-------DSVRVWTVGSGSEGEC  715 (792)
Q Consensus       646 sp~~~~lla~s~dg~I~i~D~~t~-~~~~~l~~--h~~~V~sv~~spdg~~Las~s~-------d~I~IwDl~s~~~~~~  715 (792)
                      ++++++|++-+.|+.+++||++.. +++....+  ...+-+.+||+|+.++|++|+.       +.+.+||..+.   ..
T Consensus       373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~  449 (641)
T KOG0772|consen  373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DT  449 (641)
T ss_pred             ccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---ee
Confidence            999999999999999999999986 55555544  2345678999999999999863       16899998765   66


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003842          716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN  751 (792)
Q Consensus       716 i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwD  751 (792)
                      +..+......|..|.|+|.-+-|++++.||.++||=
T Consensus       450 v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  450 VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             EEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence            777777788899999999999999999999998873

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=1.2e-22  Score=220.93  Aligned_cols=274  Identities=23%  Similarity=0.317  Sum_probs=208.1

Q ss_pred             EEEEcC---CCCEEEEEeCCCeEEEEECCCCcee------EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003842          517 CCHFSS---DGKLLATGGHDKKAVLWHTDTLKSK------TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG  587 (792)
Q Consensus       517 ~lafsp---dg~~Lasgs~Dg~I~vWdl~t~~~~------~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~  587 (792)
                      ++.|++   ....||.+.+||.|.+||.+.....      +.+..|...|.++.|.|....|++++.|.++++||+.. .
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s  132 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-S  132 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc-c
Confidence            355655   3458999999999999998754332      44567999999999999777999999999999999997 5


Q ss_pred             ceeEE--ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE--E--------Eee------------------
Q 003842          588 YSLRT--FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT--R--------VFK------------------  637 (792)
Q Consensus       588 ~~i~~--~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~--~--------~~~------------------  637 (792)
                      .++..  +.+|.+.|.++||.+++..+|++|+.||.|.|||++....-  .        .++                  
T Consensus       133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence            55544  88999999999999999999999999999999999754310  0        000                  


Q ss_pred             --CCeeE---EEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEe--------cCC---CCCeEEEEEcCCCCEEEEEeCC
Q 003842          638 --GGTAQ---MRFQPHLGRYLAAAA-ENVVSILDAETQACRLSL--------QGH---TKPIDSVCWDPSGELLASVSED  700 (792)
Q Consensus       638 --~~~~~---v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l--------~~h---~~~V~sv~~spdg~~Las~s~d  700 (792)
                        ..+..   +.+..|...|++++. |+.|+|||+++....+..        ..|   ...+.+++.+..|.+|++.+.|
T Consensus       213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD  292 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD  292 (720)
T ss_pred             ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence              01222   456667788888777 999999999986544332        123   2357788888888877665556


Q ss_pred             -eEEEEECCCCCCcceEEEeecCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCC
Q 003842          701 -SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTE  775 (792)
Q Consensus       701 -~I~IwDl~s~~~~~~i~~~~~~~~~--i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fspd  775 (792)
                       .|++|++.+... ..+..+.++...  ...-..+||+.+|++|+.|...++|.+.+...-  .+.+|.-.|++++|.|.
T Consensus       293 ~sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  293 NSIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             CcEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence             999999987532 333333333222  233467899999999999999999999887643  67899999999999873


Q ss_pred             -CCEEEEEeCCCcEEEeC
Q 003842          776 -TGYVASASHDKFVKLWK  792 (792)
Q Consensus       776 -g~~LaSgs~DG~I~IWd  792 (792)
                       -.-+|+|++|..++||+
T Consensus       372 ~~t~v~TcSdD~~~kiW~  389 (720)
T KOG0321|consen  372 ATTPVATCSDDFRVKIWR  389 (720)
T ss_pred             cCCCceeeccCcceEEEe
Confidence             23577889999999996

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=3.6e-23  Score=212.02  Aligned_cols=261  Identities=17%  Similarity=0.256  Sum_probs=220.0

Q ss_pred             CCCCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEEC
Q 003842          484 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS  563 (792)
Q Consensus       484 ~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fs  563 (792)
                      +++.|+.+++|++...   .+...++.|.+.|..|+++.  ..+++++.|++|+.|.++. ..+.++.+ ...+..|.-+
T Consensus        84 SGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~  156 (433)
T KOG0268|consen   84 SGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHH  156 (433)
T ss_pred             ccccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccc
Confidence            5678888999998876   46788999999999999988  5788999999999999875 35555543 4557777777


Q ss_pred             CCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--eCCee
Q 003842          564 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTA  641 (792)
Q Consensus       564 pdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~  641 (792)
                      ..+..++||+.+  |.|||... ..++..+.-....|.++.|+|....+|++|+.|+.|.+||++.+..++.+  .-..+
T Consensus       157 ~~~~~FaTcGe~--i~IWD~~R-~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN  233 (433)
T KOG0268|consen  157 RKNSVFATCGEQ--IDIWDEQR-DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN  233 (433)
T ss_pred             cccccccccCce--eeeccccc-CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc
Confidence            778889999876  99999986 67888888888899999999999999999999999999999999887654  45678


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 003842          642 QMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL  719 (792)
Q Consensus       642 ~v~~sp~~~~lla~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~  719 (792)
                      .++|+|..-.++++..|..++.||++.. .++....+|.+.|.+|+|+|.|.-|++|+.| +|+||.++.+......++-
T Consensus       234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk  313 (433)
T KOG0268|consen  234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK  313 (433)
T ss_pred             ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence            8999997777888888999999999986 6778888999999999999999999999999 9999999876443322211


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003842          720 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       720 ~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~  756 (792)
                        .-..|.++.|+.|.+||++|+.|+.|++|.....+
T Consensus       314 --RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  314 --RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             --hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence              12358999999999999999999999999876543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=7e-24  Score=233.28  Aligned_cols=237  Identities=27%  Similarity=0.483  Sum_probs=211.2

Q ss_pred             eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      .+.+-.|...|.|+..-..++.+++|+.|..+-+|.+.....+..|.+|...|.+|.|+++..+|++|+.+|+|++||++
T Consensus        21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle  100 (825)
T KOG0267|consen   21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE  100 (825)
T ss_pred             chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence            34567899999999998888999999999999999999888888899999999999999999999999999999999999


Q ss_pred             CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003842          585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL  664 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~  664 (792)
                      . .+.++++.+|...+.++.|+|.+. ++++|+.|+.+++||++...|.                               
T Consensus       101 e-Ak~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~-------------------------------  147 (825)
T KOG0267|consen  101 E-AKIVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCS-------------------------------  147 (825)
T ss_pred             h-hhhhhhhhccccCcceeeeccceE-EeccccccccceehhhhccCce-------------------------------
Confidence            7 788999999999999999999976 4578888999999988754444                               


Q ss_pred             ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003842          665 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC  743 (792)
Q Consensus       665 D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~  743 (792)
                              +.+.+|...|.++.|+|+|++++.+++| .++|||+..+   +.+.+|..|...+.++.|+|..-.++.|+.
T Consensus       148 --------~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~  216 (825)
T KOG0267|consen  148 --------HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSS  216 (825)
T ss_pred             --------eeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCC
Confidence                    3445577889999999999999999998 9999999777   788899999999999999999999999999


Q ss_pred             CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003842          744 YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD  785 (792)
Q Consensus       744 dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~D  785 (792)
                      |++|++||+++.+.+ ........|.+++|+++++.+++|..+
T Consensus       217 d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  217 DRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            999999999988877 444557889999999999998887654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.5e-21  Score=220.48  Aligned_cols=275  Identities=15%  Similarity=0.235  Sum_probs=216.6

Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003842          509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG  587 (792)
Q Consensus       509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~-~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~  587 (792)
                      .+|+...+.|+|.++|++|++++.||.|++|+.... +...++..+...|.+++...  .+|++|+.+++|.+|.+.+ +
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps-~   86 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS--NHFLTGSEQNTVLRYKFPS-G   86 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc--cceEEeeccceEEEeeCCC-C
Confidence            378889999999999999999999999999998765 55555555888888887754  4999999999999999987 4


Q ss_pred             ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE---eeCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003842          588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV---FKGGTAQMRFQPHLGRYLAAAAENVVSIL  664 (792)
Q Consensus       588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~---~~~~~~~v~~sp~~~~lla~s~dg~I~i~  664 (792)
                      ..-..+....-++.+++|+.+|+ +++.|+.|-.|++.++.+....+.   +++++.++.|+|.++.|++.+.||.|+||
T Consensus        87 ~~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen   87 EEDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             CccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence            44444555667899999999876 566899999999999988765554   45678999999999999999999999999


Q ss_pred             ECCCCeEEEEecCC--------CCCeEEEEEcCCCCEEE-EEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003842          665 DAETQACRLSLQGH--------TKPIDSVCWDPSGELLA-SVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY  735 (792)
Q Consensus       665 D~~t~~~~~~l~~h--------~~~V~sv~~spdg~~La-s~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg  735 (792)
                      |+.++.+..++.+-        ...+..++|+|+|..|+ .+.++.|++|+.........++ .+.+...+..+.|+|.|
T Consensus       166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-~~~~ss~~~~~~wsPnG  244 (933)
T KOG1274|consen  166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-DKLSSSKFSDLQWSPNG  244 (933)
T ss_pred             EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-ccccccceEEEEEcCCC
Confidence            99998877766531        34467789999955544 4555599999998764332222 22334459999999999


Q ss_pred             CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          736 PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       736 ~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      .|||+++.+|.|.|||+++.+.   ......|++++|.|++..|-.-...|...+|
T Consensus       245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence            9999999999999999998322   3445679999999988766554455554443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.90  E-value=7.2e-22  Score=216.82  Aligned_cols=282  Identities=21%  Similarity=0.297  Sum_probs=220.4

Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEE-----eccCCCCEEEEEECCCCCeEEEEeCCCcEE
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTN-----LEEHSSLITDVRFSPSMPRLATSSFDKTVR  579 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~--~~~~~-----l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~  579 (792)
                      .+.||.+.|+++.|+|++..|++++.|.++.+|.-++.  --+..     +.+.....+...|+|+++.|++-+..|..+
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            45699999999999999999999999999999986543  22222     223456789999999999999999999999


Q ss_pred             EEeCCCCC--ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-EE------eeCCeeEEEEecCCC
Q 003842          580 VWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RV------FKGGTAQMRFQPHLG  650 (792)
Q Consensus       580 IWdl~s~~--~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~-~~------~~~~~~~v~~sp~~~  650 (792)
                      +|......  .....+.+|.+.|.+|+|+|.|++|+ +.+.|-+-|+|-.-..+.. ..      +.....|++|-+..-
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~  420 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL  420 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence            99933322  22345668999999999999998665 8888999999865511111 11      112356677766556


Q ss_pred             EEEEEEcCCeEEEEECC-------------------------------------------CCeE----------------
Q 003842          651 RYLAAAAENVVSILDAE-------------------------------------------TQAC----------------  671 (792)
Q Consensus       651 ~lla~s~dg~I~i~D~~-------------------------------------------t~~~----------------  671 (792)
                      .++.|+.+..+++|+..                                           ++..                
T Consensus       421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L  500 (764)
T KOG1063|consen  421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL  500 (764)
T ss_pred             eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence            67777777788887532                                           0100                


Q ss_pred             -----------------EEEecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeecCCCceEE
Q 003842          672 -----------------RLSLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHS  728 (792)
Q Consensus       672 -----------------~~~l~~h~~~V~sv~~spdg~~Las~s~d------~I~IwDl~s~~~~~~i~~~~~~~~~i~s  728 (792)
                                       +..+.+|...|++++.+|+++++|+++..      .|++|+..+.   ..+..+..|.-.|+.
T Consensus       501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT~  577 (764)
T KOG1063|consen  501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVTR  577 (764)
T ss_pred             cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEEE
Confidence                             01134788899999999999999998753      5999998765   566688899999999


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-----EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          729 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       729 i~fspdg~~L~sgs~dg~I~IwDl~~~~~~-----~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ++|+||+++|++.+.|+++.+|...+....     ....|...|+++.|+|++.++||+|.|.+|+||.
T Consensus       578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE  646 (764)
T ss_pred             EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence            999999999999999999999988655433     3668999999999999999999999999999994

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.6e-20  Score=204.58  Aligned_cols=351  Identities=14%  Similarity=0.181  Sum_probs=245.9

Q ss_pred             cceEEEEeCCCeeee---cCCCeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCC----CCCCCCcceeccCCcce
Q 003842          430 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTD----PRDAGGRGMDVSQGFSF  502 (792)
Q Consensus       430 k~~l~~s~Dg~~~~s---s~s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~----~~d~~~~~~d~~~~~~~  502 (792)
                      .-.|.|+.+..-++.   .+.++||++...=+    ....-.|..|..++..+..++..    +.++.+-.||+.+   .
T Consensus        28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~----~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~---l  100 (691)
T KOG2048|consen   28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF----LEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHT---L  100 (691)
T ss_pred             eEEEEEeccCCceeeeccCCcEEEEccCCCce----eeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEeccc---C
Confidence            345777777777555   44559999988432    22223456777788776554422    3444455566555   4


Q ss_pred             eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE--EeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003842          503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFDKTVRV  580 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~--~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I  580 (792)
                      +....+....+.|++++.+|.++.++.|++||.++.++...++...  .|....+.|.+++|++++..|++|+.||.|++
T Consensus       101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri  180 (691)
T KOG2048|consen  101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI  180 (691)
T ss_pred             ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence            6777788889999999999999999999999988888887776544  34456789999999999999999999999999


Q ss_pred             EeCCCCCceeE------Eec-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---eCCeeEEEEecCCC
Q 003842          581 WDADNPGYSLR------TFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLG  650 (792)
Q Consensus       581 Wdl~s~~~~i~------~~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~  650 (792)
                      ||+.++.....      .+. +...-|+++.|..++  .|++|+..|+|.+||...+..+..+   ...+.+++..++++
T Consensus       181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d  258 (691)
T KOG2048|consen  181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNED  258 (691)
T ss_pred             EEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCC
Confidence            99987443321      111 133458888888664  5779999999999999999887665   56788999999999


Q ss_pred             EEEEEEcCCeEEEEECCCCeE----EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC----------------
Q 003842          651 RYLAAAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS----------------  709 (792)
Q Consensus       651 ~lla~s~dg~I~i~D~~t~~~----~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s----------------  709 (792)
                      ++++++.|+.|.-|...+.+.    ......|...|.+++..++  .|++|+.| .+.+-..+.                
T Consensus       259 ~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~  336 (691)
T KOG2048|consen  259 RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASD  336 (691)
T ss_pred             eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccc
Confidence            999999999999988776633    2233457888888887765  66666666 444433322                


Q ss_pred             --------------------------C------CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC----
Q 003842          710 --------------------------G------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS----  753 (792)
Q Consensus       710 --------------------------~------~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~----  753 (792)
                                                .      .....++........|.+.+.+|+|.+|+.+... .++||.+.    
T Consensus       337 ~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~  415 (691)
T KOG2048|consen  337 RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPN  415 (691)
T ss_pred             eeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcc
Confidence                                      1      0001111122234458889999999998887721 12222221    


Q ss_pred             --------------------------------------------CCcEE-----EEcccCCCeEEEEEeCCCCEEEEEeC
Q 003842          754 --------------------------------------------ENKTM-----TLTAHEGLIAALAVSTETGYVASASH  784 (792)
Q Consensus       754 --------------------------------------------~~~~~-----~~~~h~~~V~sl~fspdg~~LaSgs~  784 (792)
                                                                  +....     ........|+.+..+++|.|||+.+.
T Consensus       416 vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t  495 (691)
T KOG2048|consen  416 VKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST  495 (691)
T ss_pred             eeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec
Confidence                                                        11100     00113457889999999999999999


Q ss_pred             CCcEEEeC
Q 003842          785 DKFVKLWK  792 (792)
Q Consensus       785 DG~I~IWd  792 (792)
                      +|.|.+|+
T Consensus       496 ~g~I~v~n  503 (691)
T KOG2048|consen  496 RGQIFVYN  503 (691)
T ss_pred             cceEEEEE
Confidence            99999996

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.4e-20  Score=204.85  Aligned_cols=278  Identities=15%  Similarity=0.217  Sum_probs=228.8

Q ss_pred             eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEEeccC-CCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~-~~~~l~~h-~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      .+.+.--...|+|+||+.+.+.||++-.||.|.||++...- ....+.++ ...|.+++|+ ++..|++.+.+|.|.-||
T Consensus        18 crf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwD   96 (691)
T KOG2048|consen   18 CRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWD   96 (691)
T ss_pred             EEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEe
Confidence            34455567889999999999999999999999999998654 34455554 5679999999 455899999999999999


Q ss_pred             CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-----eCCeeEEEEecCCCEEEEEEc
Q 003842          583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~~~~v~~sp~~~~lla~s~  657 (792)
                      +.+ .+....+....+.|++++.+|.+. .++.|++||.++++++..++.....     ++.+.++.|++++.+++.|+.
T Consensus        97 l~~-lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~  174 (691)
T KOG2048|consen   97 LHT-LKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI  174 (691)
T ss_pred             ccc-CceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence            998 777888888899999999999875 5558888999999999888765432     467889999999999999999


Q ss_pred             CCeEEEEECCCCeEEEEe-----cC---CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEE
Q 003842          658 ENVVSILDAETQACRLSL-----QG---HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSC  729 (792)
Q Consensus       658 dg~I~i~D~~t~~~~~~l-----~~---h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si  729 (792)
                      ||.|++||..++..+...     ..   ...-|++|.|-.++.++..-+.++|.+||...+   ..+..+..|...|.++
T Consensus       175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl~L  251 (691)
T KOG2048|consen  175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG---TLIQSHSCHDADVLAL  251 (691)
T ss_pred             CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc---chhhhhhhhhcceeEE
Confidence            999999999998766521     11   223478888887765554444559999999776   7788888999999999


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCcE--E---EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003842          730 VFHPTYPSLLVIGCYQSLELWNMSENKT--M---TLTAHEGLIAALAVSTETGYVASASHDKFVKL  790 (792)
Q Consensus       730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~--~---~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I  790 (792)
                      +..++++++++++.|+.|..|...+++.  +   ....|...|.+++..++  .|++|+.|+.+.|
T Consensus       252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  252 AVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI  315 (691)
T ss_pred             EEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence            9999999999999999999998877643  1   44578899999999877  8999999998875

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=5.6e-21  Score=215.93  Aligned_cols=239  Identities=17%  Similarity=0.267  Sum_probs=201.9

Q ss_pred             ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 003842          551 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG  630 (792)
Q Consensus       551 ~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~  630 (792)
                      ..|....+.|+|.++|++|++++.||.|++|+..+....-.++..+...|.+++....   .|++|+.+++|.+|.+..+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCC
Confidence            3688889999999999999999999999999988753444444447788888887643   6779999999999999876


Q ss_pred             e---eEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEE
Q 003842          631 S---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT  706 (792)
Q Consensus       631 ~---~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwD  706 (792)
                      .   .+..|..++.+++|+.++.++++|+.|-.|++.++.+....+.+.+|+++|.+|.|+|.+++||+.+.| .|+|||
T Consensus        87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD  166 (933)
T ss_pred             CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence            5   567788899999999999999999999999999999999999999999999999999999999999988 999999


Q ss_pred             CCCCCCcceEEEe----ecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EE--cccCCCeEEEEEeCCCCE
Q 003842          707 VGSGSEGECVHEL----SCN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL--TAHEGLIAALAVSTETGY  778 (792)
Q Consensus       707 l~s~~~~~~i~~~----~~~-~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~--~~h~~~V~sl~fspdg~~  778 (792)
                      +.++.....+..+    ... ...+..++|+|++..|++.+.|+.|++|+..+.... .+  ..+...++++.|+|+|+|
T Consensus       167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y  246 (933)
T KOG1274|consen  167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY  246 (933)
T ss_pred             cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence            9876432222211    111 334677899999999999999999999999988765 23  234555999999999999


Q ss_pred             EEEEeCCCcEEEeC
Q 003842          779 VASASHDKFVKLWK  792 (792)
Q Consensus       779 LaSgs~DG~I~IWd  792 (792)
                      ||+++.||.|.|||
T Consensus       247 iAAs~~~g~I~vWn  260 (933)
T KOG1274|consen  247 IAASTLDGQILVWN  260 (933)
T ss_pred             EeeeccCCcEEEEe
Confidence            99999999999997

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.5e-21  Score=196.59  Aligned_cols=243  Identities=21%  Similarity=0.350  Sum_probs=207.2

Q ss_pred             ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEE
Q 003842          545 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY  624 (792)
Q Consensus       545 ~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~i  624 (792)
                      ..++.+.+|.+.|+.++.......+.+++.|.+.+||.+++ +.++..+.+|.+.|++|+|++.+ .|+++++.|++-.|
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHI  216 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecccccceeeEEecccc-ceEEEccCCcchHH
Confidence            45677889999999999988888999999999999999998 88999999999999999999986 47779999999999


Q ss_pred             EEc------CCC--------e--------------------------eEEEeeC---CeeEEEEecCCCEEEEEEcCCeE
Q 003842          625 WSI------NNG--------S--------------------------CTRVFKG---GTAQMRFQPHLGRYLAAAAENVV  661 (792)
Q Consensus       625 wdl------~~~--------~--------------------------~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I  661 (792)
                      |..      ...        +                          .+..+++   .+.+..|...+..+++++.|.+.
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA  296 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA  296 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence            972      110        0                          0111222   23445577788899999999999


Q ss_pred             EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003842          662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV  740 (792)
Q Consensus       662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s  740 (792)
                      .+||+++++++..+.+|....+.++-+|.-+++++.+.| +.++||++  +....+..|.+|...|+++.|.-+.+ +++
T Consensus       297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtdtVTS~vF~~dd~-vVS  373 (481)
T KOG0300|consen  297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTDTVTSVVFNTDDR-VVS  373 (481)
T ss_pred             eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecccccceeEEEEecCCc-eee
Confidence            999999999999999999999999999999999999999 99999998  44577888999999999999998876 899


Q ss_pred             EEcCCeEEEEECCCCcE-EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          741 IGCYQSLELWNMSENKT-MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       741 gs~dg~I~IwDl~~~~~-~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |+.|.+|+|||+++-+. +.......+++.++++..+.+|+.--++..|+|||
T Consensus       374 gSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD  426 (481)
T KOG0300|consen  374 GSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD  426 (481)
T ss_pred             cCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence            99999999999987653 34455677899999998888888887788899987

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=5.7e-21  Score=202.02  Aligned_cols=252  Identities=15%  Similarity=0.222  Sum_probs=200.7

Q ss_pred             CeEEEEECCCCceeEEeccCC-CCEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCe
Q 003842          534 KKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD  611 (792)
Q Consensus       534 g~I~vWdl~t~~~~~~l~~h~-~~V~~i~fspdg~~Lasgs~-Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~  611 (792)
                      .++.+||+.+|....++++.. ..-.++..- ++.+++++.. ...|.+|.+....... ......+.|.+++-+|+|. 
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n~G~-   94 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASSNLGY-   94 (476)
T ss_pred             cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecCCCce-
Confidence            459999999999998888652 211112111 3356666654 4478999998633333 3344678899999999976 


Q ss_pred             EEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeEEEEECC---------CCeEEEEecCCC
Q 003842          612 LICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAE---------TQACRLSLQGHT  679 (792)
Q Consensus       612 ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I~i~D~~---------t~~~~~~l~~h~  679 (792)
                      +++.|+..|.|++|.+.+|..+..+..   .++++.|+.++.+|++++.||.|.+|++.         +-+++..|..|.
T Consensus        95 ~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht  174 (476)
T KOG0646|consen   95 FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT  174 (476)
T ss_pred             EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc
Confidence            444676899999999999998877654   58899999999999999999999999763         346788899999


Q ss_pred             CCeEEEEEcCCC--CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003842          680 KPIDSVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       680 ~~V~sv~~spdg--~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~  756 (792)
                      -+|+.+...+.|  .+|++++.| ++++||+..+   ..+..+. ....+.+|+++|-+..+++|+.+|.|.+.++....
T Consensus       175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~  250 (476)
T KOG0646|consen  175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS  250 (476)
T ss_pred             ceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCC
Confidence            999999887753  589999999 9999999887   4444443 45689999999999999999999999998875432


Q ss_pred             -----------------EEEEcccCC--CeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          757 -----------------TMTLTAHEG--LIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       757 -----------------~~~~~~h~~--~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                                       ...+.+|.+  .|+|++++.||.+|++|++||.|+|||
T Consensus       251 ~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd  305 (476)
T KOG0646|consen  251 GQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD  305 (476)
T ss_pred             cccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence                             125678888  999999999999999999999999997

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.88  E-value=1.5e-20  Score=206.56  Aligned_cols=360  Identities=17%  Similarity=0.240  Sum_probs=259.7

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCC--CcchhhcccccccCC-CCC-CceeeeccCCC---CCCCCCCCcceeccCC
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDK--DLELRADMDRLVEDG-SLD-DNVESFLSHDD---TDPRDAGGRGMDVSQG  499 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~--tg~~~~~~~~~~~~g-~~d-~~v~~~l~~d~---~~~~d~~~~~~d~~~~  499 (792)
                      ...+-|.|++..+++++.+   .||...  +|..+. .-++.+.+ ... -.-..|..+.+   ..+..++-++|...+.
T Consensus       270 V~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~-~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~  348 (764)
T KOG1063|consen  270 VYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD-VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK  348 (764)
T ss_pred             eEEEEEccchhhheecccCcceEEEecCCccceEEE-EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc
Confidence            4468899999888887666   779654  344432 23333333 111 12222222222   1234455566665555


Q ss_pred             cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC----CCceeEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 003842          500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD  575 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~----t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D  575 (792)
                      ..+.....+.||.+.|.+++|+|.|++|++.+.|-+-+||---    +...+..-.-|...++|++|-+....|++|...
T Consensus       349 ~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdE  428 (764)
T KOG1063|consen  349 TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADE  428 (764)
T ss_pred             cceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccc
Confidence            6667777889999999999999999999999999999998643    122333344688999999999877789999999


Q ss_pred             CcEEEEeCCC-------------------------------------------CCc------------------------
Q 003842          576 KTVRVWDADN-------------------------------------------PGY------------------------  588 (792)
Q Consensus       576 g~V~IWdl~s-------------------------------------------~~~------------------------  588 (792)
                      +.+|+|+...                                           ++.                        
T Consensus       429 KVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq  508 (764)
T KOG1063|consen  429 KVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQ  508 (764)
T ss_pred             eeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHH
Confidence            9999997741                                           000                        


Q ss_pred             --------eeEEecccCCCeEEEEEcCCCCeEEEEEeCC-----CcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEE
Q 003842          589 --------SLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRY  652 (792)
Q Consensus       589 --------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~l  652 (792)
                              .+..+.+|...|++++.+|+++ +++++++.     ..|++|+..+-..+..+.+   .++.++|+|++.+|
T Consensus       509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~L  587 (764)
T KOG1063|consen  509 LQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYL  587 (764)
T ss_pred             HHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEE
Confidence                    0223448999999999999975 77777664     4699999988776665554   46779999999999


Q ss_pred             EEEEcCCeEEEEECCCCe-E---EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEE--EeecCCCc
Q 003842          653 LAAAAENVVSILDAETQA-C---RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH--ELSCNGNK  725 (792)
Q Consensus       653 la~s~dg~I~i~D~~t~~-~---~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~--~~~~~~~~  725 (792)
                      ++++.|.++.+|...... .   ....+.|..-|.+..|+|++.+|++++.| +|+||....... +++.  ........
T Consensus       588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~~~a  666 (764)
T KOG1063|consen  588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD-KYISRFACLKFSLA  666 (764)
T ss_pred             EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh-hhhhhhchhccCCc
Confidence            999999999999875431 1   22367799999999999999999999999 999999976532 2222  33345678


Q ss_pred             eEEEEEeCC-----CCEEEEEEcCCeEEEEECC------CCcEE-------EEcccCCCeEEEEEeCC--------C--C
Q 003842          726 FHSCVFHPT-----YPSLLVIGCYQSLELWNMS------ENKTM-------TLTAHEGLIAALAVSTE--------T--G  777 (792)
Q Consensus       726 i~si~fspd-----g~~L~sgs~dg~I~IwDl~------~~~~~-------~~~~h~~~V~sl~fspd--------g--~  777 (792)
                      |+.++|.|-     +..+++|-..|.|.+|...      +....       ....|...|+.+.|.|.        .  .
T Consensus       667 VTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l  746 (764)
T KOG1063|consen  667 VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWL  746 (764)
T ss_pred             eeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecccccccccccccee
Confidence            899888772     2367788888999999965      11111       23457788999999964        2  2


Q ss_pred             EEEEEeCCCcEEEeC
Q 003842          778 YVASASHDKFVKLWK  792 (792)
Q Consensus       778 ~LaSgs~DG~I~IWd  792 (792)
                      .|++|++|..++|++
T Consensus       747 ~la~~g~D~~vri~n  761 (764)
T KOG1063|consen  747 NLAVGGDDESVRIFN  761 (764)
T ss_pred             EEeeecccceeEEee
Confidence            479999999999985

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.87  E-value=3.4e-21  Score=203.58  Aligned_cols=216  Identities=19%  Similarity=0.383  Sum_probs=180.5

Q ss_pred             ceeeeeeeecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-------ceeEEeccCCCCEEEEEECC-CCCeEEE
Q 003842          501 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSP-SMPRLAT  571 (792)
Q Consensus       501 ~~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t~-------~~~~~l~~h~~~V~~i~fsp-dg~~Las  571 (792)
                      .+.+-.+|++|.+.-+.++|++.. -+|++|+.|+.|++||+...       .....+.+|...|.+++|++ +..+|++
T Consensus       166 ~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s  245 (422)
T KOG0264|consen  166 ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS  245 (422)
T ss_pred             cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee
Confidence            334455899999988999999943 48999999999999998643       23566789999999999999 5568999


Q ss_pred             EeCCCcEEEEeCCC-CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCC
Q 003842          572 SSFDKTVRVWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG  650 (792)
Q Consensus       572 gs~Dg~V~IWdl~s-~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~  650 (792)
                      ++.|+.+.|||+++ ..++.....+|.+.|.|++|+|.+.++||+|+.|++|++||+++.+                   
T Consensus       246 v~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~-------------------  306 (422)
T KOG0264|consen  246 VGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN-------------------  306 (422)
T ss_pred             ecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-------------------
Confidence            99999999999996 3566777889999999999999999999999999999999998542                   


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCC-----------CcceEE
Q 003842          651 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGS-----------EGECVH  717 (792)
Q Consensus       651 ~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~-----------~~~~i~  717 (792)
                                         +++.++.+|...|.+|.|+|.. .+|++++.| .+.|||+..-.           ..+.+.
T Consensus       307 -------------------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF  367 (422)
T KOG0264|consen  307 -------------------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF  367 (422)
T ss_pred             -------------------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeE
Confidence                               3566788899999999999965 478888888 99999996532           234567


Q ss_pred             EeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCC
Q 003842          718 ELSCNGNKFHSCVFHPTYPS-LLVIGCYQSLELWNMSE  754 (792)
Q Consensus       718 ~~~~~~~~i~si~fspdg~~-L~sgs~dg~I~IwDl~~  754 (792)
                      ...+|...|..+.|+|...+ |++++.|+.+.||.+..
T Consensus       368 ~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  368 IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             EecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            77789999999999999886 55667789999999864

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=1.1e-20  Score=199.24  Aligned_cols=292  Identities=18%  Similarity=0.292  Sum_probs=214.4

Q ss_pred             CcceeeeeeeecCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCC----CceeEEeccCCCCEEEEEECCC-CCeEEE
Q 003842          499 GFSFKEANSVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPS-MPRLAT  571 (792)
Q Consensus       499 ~~~~~~~~~l~~H~~~V~~lafspdg--~~Lasgs~Dg~I~vWdl~t----~~~~~~l~~h~~~V~~i~fspd-g~~Las  571 (792)
                      ...+.....++-+.+.|+|++|+|..  +++|+|...|.|-+||+.+    ...+..+..|...|.+|.|+|. ...|++
T Consensus       173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s  252 (498)
T KOG4328|consen  173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS  252 (498)
T ss_pred             cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence            44556777888999999999999955  5889999999999999952    3345667789999999999995 458999


Q ss_pred             EeCCCcEEEEeCCCCC-ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----EEEeeCCeeEEEEe
Q 003842          572 SSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQ  646 (792)
Q Consensus       572 gs~Dg~V~IWdl~s~~-~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~~~~~~v~~s  646 (792)
                      .++||+|++-|++..- ..+..+......+.++.|+.+...++ .++.=|.+.+||++++..    ++..+..+..++++
T Consensus       253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N  331 (498)
T KOG4328|consen  253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN  331 (498)
T ss_pred             eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence            9999999999998622 12223333455677888887766555 666666999999998654    23345578889999


Q ss_pred             cCCCEEE-EEEcCCeEEEEECCCCe----EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCcceEEEe
Q 003842          647 PHLGRYL-AAAAENVVSILDAETQA----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHEL  719 (792)
Q Consensus       647 p~~~~ll-a~s~dg~I~i~D~~t~~----~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~-~~~~~i~~~  719 (792)
                      |-..+++ +++.|++++|||++...    +......|...|.+++|+|++-.|++.+.| .|+|||..-. ........+
T Consensus       332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I  411 (498)
T KOG4328|consen  332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI  411 (498)
T ss_pred             CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence            9887654 56669999999998642    234455699999999999987778888877 9999998411 111222222


Q ss_pred             e---cCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccC-CCeEE-EEEeCCCCEEEE-EeCCCcEEE
Q 003842          720 S---CNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE-GLIAA-LAVSTETGYVAS-ASHDKFVKL  790 (792)
Q Consensus       720 ~---~~~~~--i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~-~~V~s-l~fspdg~~LaS-gs~DG~I~I  790 (792)
                      .   .+...  ....+|.|+..+|++|..-..|-|||-..++.+ .+.... ..|.+ ..|+|-+..+++ ++..|.|+|
T Consensus       412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v  491 (498)
T KOG4328|consen  412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV  491 (498)
T ss_pred             eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence            1   11122  345689999999999999999999999988855 333322 24444 478998874544 455788988


Q ss_pred             e
Q 003842          791 W  791 (792)
Q Consensus       791 W  791 (792)
                      |
T Consensus       492 f  492 (498)
T KOG4328|consen  492 F  492 (498)
T ss_pred             E
Confidence            8

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=3.3e-20  Score=187.51  Aligned_cols=224  Identities=18%  Similarity=0.307  Sum_probs=184.0

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCce
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS  589 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~  589 (792)
                      .|..++.+++|.++ ..+++|+.||.|+++|+.++.. ..+..|...|.||.+++....+++|++|++|++||.+. ...
T Consensus        52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~  128 (323)
T KOG1036|consen   52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVV  128 (323)
T ss_pred             ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-ccc
Confidence            57889999999884 4789999999999999998764 45667999999999999888999999999999999986 333


Q ss_pred             eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-----EeeCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003842          590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-----VFKGGTAQMRFQPHLGRYLAAAAENVVSIL  664 (792)
Q Consensus       590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~-----~~~~~~~~v~~sp~~~~lla~s~dg~I~i~  664 (792)
                      ...+. ....|.++....  + .|++|+.|..|.+||+++.....     .++-.+.++++.|++.-+++++-||.|.+=
T Consensus       129 ~~~~d-~~kkVy~~~v~g--~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE  204 (323)
T KOG1036|consen  129 VGTFD-QGKKVYCMDVSG--N-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVE  204 (323)
T ss_pred             ccccc-cCceEEEEeccC--C-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence            44443 334788988873  3 45588889999999999865432     356678899999998999999999999887


Q ss_pred             ECCCC----eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEE
Q 003842          665 DAETQ----ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV  730 (792)
Q Consensus       665 D~~t~----~~~~~l~~h~~---------~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~  730 (792)
                      .++..    +..+.|+.|..         +|++|+|+|-...|++|+.| .|.+||+.+.   +.+..+......|.+++
T Consensus       205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~sls  281 (323)
T KOG1036|consen  205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLS  281 (323)
T ss_pred             ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEE
Confidence            77665    55666776643         69999999999999999999 9999999765   55666666667899999


Q ss_pred             EeCCCCEEEEEEc
Q 003842          731 FHPTYPSLLVIGC  743 (792)
Q Consensus       731 fspdg~~L~sgs~  743 (792)
                      |+.+|..||++++
T Consensus       282 fs~dG~~LAia~s  294 (323)
T KOG1036|consen  282 FSMDGSLLAIASS  294 (323)
T ss_pred             eccCCCeEEEEec
Confidence            9999999999976

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=1.4e-20  Score=194.02  Aligned_cols=246  Identities=22%  Similarity=0.428  Sum_probs=195.3

Q ss_pred             eecCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECC----------------CCceeEEeccCCCCEEEEEECCC-CCe
Q 003842          508 VRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTD----------------TLKSKTNLEEHSSLITDVRFSPS-MPR  568 (792)
Q Consensus       508 l~~H~~~V~~lafspdg--~~Lasgs~Dg~I~vWdl~----------------t~~~~~~l~~h~~~V~~i~fspd-g~~  568 (792)
                      .-.|.+.|..+..++-|  .+.|+-+..|.|.|||+.                ..+.+.++.+|...=+.|+|+|- ...
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            34677778887777754  466666788999999974                24567888899999999999993 236


Q ss_pred             EEEEeCCCcEEEEeCCCCCcee--EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEe
Q 003842          569 LATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ  646 (792)
Q Consensus       569 Lasgs~Dg~V~IWdl~s~~~~i--~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s  646 (792)
                      |++|..-+.|++|...++...+  ..|.+|...|..|+|+|..+.+|++|+.||+|+|||++.+...             
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~-------------  293 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK-------------  293 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc-------------
Confidence            8888888899999998855443  4566899999999999999999999999999999999976321             


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc
Q 003842          647 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK  725 (792)
Q Consensus       647 p~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~  725 (792)
                                             .++ ..+.|.+.|+.|.|+.+..+||+|++| +++|||++..+...++..++-|..+
T Consensus       294 -----------------------~~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p  349 (440)
T KOG0302|consen  294 -----------------------AAV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP  349 (440)
T ss_pred             -----------------------cee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence                                   111 125688999999999988899999999 9999999998878899999999999


Q ss_pred             eEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcE-----------------EEEccc--CCCeEEEEEeCC-CCEEEEEeC
Q 003842          726 FHSCVFHPTY-PSLLVIGCYQSLELWNMSENKT-----------------MTLTAH--EGLIAALAVSTE-TGYVASASH  784 (792)
Q Consensus       726 i~si~fspdg-~~L~sgs~dg~I~IwDl~~~~~-----------------~~~~~h--~~~V~sl~fspd-g~~LaSgs~  784 (792)
                      |+++.|+|.. ..|++++.|..|.|||+.-..-                 -.+..|  ...|..+.|++. -.+|++.+.
T Consensus       350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~  429 (440)
T KOG0302|consen  350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAI  429 (440)
T ss_pred             eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecc
Confidence            9999999954 5788889999999999854221                 022234  446888899874 357888888


Q ss_pred             CCcEEEe
Q 003842          785 DKFVKLW  791 (792)
Q Consensus       785 DG~I~IW  791 (792)
                      || +.||
T Consensus       430 dG-fnVf  435 (440)
T KOG0302|consen  430 DG-FNVF  435 (440)
T ss_pred             cc-eeEE
Confidence            88 4444

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=1.9e-20  Score=190.22  Aligned_cols=289  Identities=19%  Similarity=0.339  Sum_probs=219.3

Q ss_pred             cceeeeeee-ecCCCCeEEEEEcC----C-CCEEEEEeCCCeEEEEECCCCc---eeEEec--cCCCCEEEEEECCC---
Q 003842          500 FSFKEANSV-RASTSKVICCHFSS----D-GKLLATGGHDKKAVLWHTDTLK---SKTNLE--EHSSLITDVRFSPS---  565 (792)
Q Consensus       500 ~~~~~~~~l-~~H~~~V~~lafsp----d-g~~Lasgs~Dg~I~vWdl~t~~---~~~~l~--~h~~~V~~i~fspd---  565 (792)
                      .+|+....+ ..|+.+|..++|++    + -..+|+++ ...|.+|......   .+..+.  .|......++|+-+   
T Consensus        25 ~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~  103 (385)
T KOG1034|consen   25 RSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNT  103 (385)
T ss_pred             cceEeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCC
Confidence            344554444 57889999999985    2 23556655 4578888875432   222222  37777888889764   


Q ss_pred             -CCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee------C
Q 003842          566 -MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------G  638 (792)
Q Consensus       566 -g~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~------~  638 (792)
                       ..+||+|+.-|.|+|.|+.+ +.+...+.+|...|+.|.|+|+...|++++++|..||+|++.+..|+..|.      .
T Consensus       104 ~~p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd  182 (385)
T KOG1034|consen  104 GNPFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD  182 (385)
T ss_pred             CCeeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC
Confidence             34899999999999999998 788889999999999999999999999999999999999999999999874      3


Q ss_pred             CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE------E---------------------E-EecCCCCCeEEEEEcCC
Q 003842          639 GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC------R---------------------L-SLQGHTKPIDSVCWDPS  690 (792)
Q Consensus       639 ~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~------~---------------------~-~l~~h~~~V~sv~~spd  690 (792)
                      .+.++.|+.++.++++++.|..|.+|++...+.      .                     + +-..|...|.|+.|-  
T Consensus       183 eVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--  260 (385)
T KOG1034|consen  183 EVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--  260 (385)
T ss_pred             cEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--
Confidence            678899999999999999999999999973211      1                     0 112356666677665  


Q ss_pred             CCEEEEEeCC-eEEEEECCCC-----------CCcceEEEeecCCCceEEE--EEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003842          691 GELLASVSED-SVRVWTVGSG-----------SEGECVHELSCNGNKFHSC--VFHPTYPSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       691 g~~Las~s~d-~I~IwDl~s~-----------~~~~~i~~~~~~~~~i~si--~fspdg~~L~sgs~dg~I~IwDl~~~~  756 (792)
                      |+++++-+-+ .|..|.....           .....+.++......|+-+  +|.+-.+.|+.|...|.|++||++..+
T Consensus       261 gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~e  340 (385)
T KOG1034|consen  261 GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNE  340 (385)
T ss_pred             hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCC
Confidence            5778887666 9999987211           1122334444444445444  566778999999999999999998876


Q ss_pred             EE---E--EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          757 TM---T--LTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       757 ~~---~--~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ..   +  .......|...+|+.|+.+|+..++|++|.-||
T Consensus       341 p~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  341 PPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             CccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence            53   2  223456789999999999999999999999886

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.9e-21  Score=224.78  Aligned_cols=242  Identities=19%  Similarity=0.367  Sum_probs=201.0

Q ss_pred             CCCeEEEEEcCCCCE----EEEEeCCCeEEEEECCCC------ceeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEE
Q 003842          512 TSKVICCHFSSDGKL----LATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRV  580 (792)
Q Consensus       512 ~~~V~~lafspdg~~----Lasgs~Dg~I~vWdl~t~------~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~I  580 (792)
                      ..+.++++|.+.|..    ||.|..||.|.+||....      ..+.++..|.+.|..+.|++... +||+|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            345788999987765    899999999999998652      34566778999999999999765 9999999999999


Q ss_pred             EeCCCCCceeEE-ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC-----CeeEEEEecCCCE-EE
Q 003842          581 WDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGR-YL  653 (792)
Q Consensus       581 Wdl~s~~~~i~~-~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~~~-ll  653 (792)
                      ||+.+....... -....+.|.+|+|+..-.++|++++.+|.+.|||++..+.+-.+..     +...+.|+|+... ++
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~  223 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL  223 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence            999874433322 1235678999999988889999999999999999999877665543     3557999999865 55


Q ss_pred             EEEcCC---eEEEEECCCC-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceE
Q 003842          654 AAAAEN---VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH  727 (792)
Q Consensus       654 a~s~dg---~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~  727 (792)
                      +++.|.   .|.+||+|.. .++.++.+|...|.++.|++.+ ++|++++.| .|.+|+.+++   +.+..+....+++.
T Consensus       224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~f  300 (1049)
T KOG0307|consen  224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCF  300 (1049)
T ss_pred             eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCccee
Confidence            555543   8999999875 6777888999999999999966 799999999 9999999887   88888888899999


Q ss_pred             EEEEeCCCC-EEEEEEcCCeEEEEECCCCc
Q 003842          728 SCVFHPTYP-SLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       728 si~fspdg~-~L~sgs~dg~I~IwDl~~~~  756 (792)
                      .+.|+|... .|++.+-||.|.||.+.+..
T Consensus       301 dv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  301 DVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999999876 77888899999999987665

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=1.1e-20  Score=199.98  Aligned_cols=279  Identities=17%  Similarity=0.223  Sum_probs=208.8

Q ss_pred             CcceeccCCcceeeeeeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC--CceeEEeccCCCCEEEEEECCCCC
Q 003842          491 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMP  567 (792)
Q Consensus       491 ~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t--~~~~~~l~~h~~~V~~i~fspdg~  567 (792)
                      .++||+.......++....... .|..++|+.... .+|+.+.|..|++|.-..  ++....-+.....-.|++......
T Consensus        14 ~kl~D~s~~~~~~~~~~~t~~p-g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~   92 (673)
T KOG4378|consen   14 TKLSDFSDLETKSEYVHQTAEP-GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSL   92 (673)
T ss_pred             eEEeecccccCccccccCCCCC-cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcce
Confidence            4455555443333333333222 389999998764 233445788899997442  222222222222334444444457


Q ss_pred             eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC----eeEE
Q 003842          568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQM  643 (792)
Q Consensus       568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v  643 (792)
                      |+++|+..+.|+|||+.. +.+.+.+++|...|+++.|+..+ .+|++++..|.|.|..+.++.....|..+    +.-+
T Consensus        93 y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll  170 (673)
T KOG4378|consen   93 YEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLL  170 (673)
T ss_pred             eeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEEe
Confidence            999999999999999995 78889999999999999998775 46779999999999999998877777643    3457


Q ss_pred             EEecCCCEEEE-EEcCCeEEEEECCCCeEEEEe-cCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 003842          644 RFQPHLGRYLA-AAAENVVSILDAETQACRLSL-QGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHEL  719 (792)
Q Consensus       644 ~~sp~~~~lla-~s~dg~I~i~D~~t~~~~~~l-~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~  719 (792)
                      .|++....++. ++.+|.|.+||+....+++.+ +.|..+...|||+|.. .+|++.+.| .|.+||++......++.  
T Consensus       171 ~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~--  248 (673)
T KOG4378|consen  171 RYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT--  248 (673)
T ss_pred             ecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee--
Confidence            88988877664 566899999999988777665 4599999999999955 578888999 99999998653333332  


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-E-EEcccCCCeEEEEEeCCC
Q 003842          720 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-M-TLTAHEGLIAALAVSTET  776 (792)
Q Consensus       720 ~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~-~-~~~~h~~~V~sl~fspdg  776 (792)
                        ...++..++|.++|.+|++|...|.|..||++..+. + .+.+|...|++++|-+.-
T Consensus       249 --y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  249 --YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             --ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence              356889999999999999999999999999987653 3 677999999999997754

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1.8e-20  Score=197.17  Aligned_cols=242  Identities=22%  Similarity=0.417  Sum_probs=191.4

Q ss_pred             eEEEEEcC-------CCCEEEEEeCCCeEEEEECCCC---ceeEE------------------eccCCCCEEEEEECCCC
Q 003842          515 VICCHFSS-------DGKLLATGGHDKKAVLWHTDTL---KSKTN------------------LEEHSSLITDVRFSPSM  566 (792)
Q Consensus       515 V~~lafsp-------dg~~Lasgs~Dg~I~vWdl~t~---~~~~~------------------l~~h~~~V~~i~fspdg  566 (792)
                      ..|++|..       -|+|+|.|+.|..|.|||++-.   .+..+                  -.+|+..|.+++|+.+-
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            36777753       3679999999999999998521   11111                  22688999999998854


Q ss_pred             -CeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC---CeeEEEeeCCeeE
Q 003842          567 -PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRVFKGGTAQ  642 (792)
Q Consensus       567 -~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~---~~~~~~~~~~~~~  642 (792)
                       ..||+||.|.+|++||+.+ +++..++..|...|.++.|+|....++++|+.|++|.+.|++.   ......+.+.+..
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~-g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk  334 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDT-GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK  334 (463)
T ss_pred             ceeEEecCCCceEEEEEcCC-CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence             4899999999999999998 8888999999999999999999999999999999999999994   3344567889999


Q ss_pred             EEEecCCCE-EEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEE
Q 003842          643 MRFQPHLGR-YLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHE  718 (792)
Q Consensus       643 v~~sp~~~~-lla~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~  718 (792)
                      +.|.+.... +++++.||.|+-+|+|.. ++++++..|..+|.+|+++..- .++++++.+ .|++|++..... +.+..
T Consensus       335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~  413 (463)
T KOG0270|consen  335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKE  413 (463)
T ss_pred             EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-ccccc
Confidence            999998765 556667999999999986 9999999999999999999854 477888888 999999965322 23322


Q ss_pred             eecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCcEE
Q 003842          719 LSCNGNKFHSCVFHPTYPS-LLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       719 ~~~~~~~i~si~fspdg~~-L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      ....-+...|+++.|+-.+ +++|+..+.++|||+.+...+
T Consensus       414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            2222334667778887654 556666678999999877644

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=3.4e-21  Score=213.93  Aligned_cols=236  Identities=19%  Similarity=0.316  Sum_probs=193.4

Q ss_pred             eEEEEEcC-CCCEEEEEeCCCeEEEEECCC---CceeEEeccCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCce
Q 003842          515 VICCHFSS-DGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYS  589 (792)
Q Consensus       515 V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t---~~~~~~l~~h~~~V~~i~fspd-g~~Lasgs~Dg~V~IWdl~s~~~~  589 (792)
                      +..+.|.. +.++|||++..|.|.+||+..   .+.+..|..|...|+++.|++. ..+|++|+.||+|++||++. ...
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-~~S  168 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-KKS  168 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-ccc
Confidence            34566664 567999999999999999987   5666788899999999999984 55899999999999999998 566


Q ss_pred             eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eE---EEeeCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003842          590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CT---RVFKGGTAQMRFQPHLGRYLAAAAENVVSILD  665 (792)
Q Consensus       590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~~---~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D  665 (792)
                      ..++.+....|.++.|+|...+.|+++.+.|.+.+||++... +.   ..+.+.+.++.|+|+..+|++|+.|+.|+|||
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd  248 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD  248 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence            777778889999999999988999999999999999998753 33   23567899999999999999999999999999


Q ss_pred             CCCCeE--EEEecCCCCCeEEEEEcCCCC-EEEEEeC--C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC-CCCEE
Q 003842          666 AETQAC--RLSLQGHTKPIDSVCWDPSGE-LLASVSE--D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-TYPSL  738 (792)
Q Consensus       666 ~~t~~~--~~~l~~h~~~V~sv~~spdg~-~Las~s~--d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp-dg~~L  738 (792)
                      ..+.+.  +.++. ...+|.+|.|-|+.. .|++++.  | .|+|||++.  ...+...+..|...++.++|.. |...+
T Consensus       249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR--PYIP~~t~~eH~~~vt~i~W~~~d~~~l  325 (839)
T KOG0269|consen  249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR--PYIPYATFLEHTDSVTGIAWDSGDRINL  325 (839)
T ss_pred             ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecc--ccccceeeeccCccccceeccCCCceee
Confidence            986543  33333 457899999999766 5666653  4 899999984  4567788999999999999976 45567


Q ss_pred             EEEEcCCeEEEEECCC
Q 003842          739 LVIGCYQSLELWNMSE  754 (792)
Q Consensus       739 ~sgs~dg~I~IwDl~~  754 (792)
                      .+++.|+.|..-.+++
T Consensus       326 ~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  326 WSCSKDGTVLQHLFKN  341 (839)
T ss_pred             EeecCccHHHHhhhhc
Confidence            7888888776555444

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.86  E-value=1.2e-17  Score=183.29  Aligned_cols=347  Identities=29%  Similarity=0.489  Sum_probs=255.9

Q ss_pred             ceEEEEeCCCeeeecC---CCeeEeCCCcc-hhhcccccccCCCCCCceeee-c-cCCCC------CCCCCCCcceeccC
Q 003842          431 PLMMFGTDGAGTLTSP---SNQLWDDKDLE-LRADMDRLVEDGSLDDNVESF-L-SHDDT------DPRDAGGRGMDVSQ  498 (792)
Q Consensus       431 ~~l~~s~Dg~~~~ss~---s~~lWD~~tg~-~~~~~~~~~~~g~~d~~v~~~-l-~~d~~------~~~d~~~~~~d~~~  498 (792)
                      ..+.+.+++..++..+   ...+|+...+. ....+.....     ..+... + ..+..      ...+....+|+...
T Consensus        69 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  143 (466)
T COG2319          69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST  143 (466)
T ss_pred             EEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----CceeeEEEECCCcceEEeccCCCCccEEEEEecC
Confidence            3456666777666544   33789988775 2222222111     011111 1 11111      12244566666654


Q ss_pred             CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC-eEEEEeCCC
Q 003842          499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDK  576 (792)
Q Consensus       499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~-Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg  576 (792)
                        .+.....+..|...|.+++|+++++++++++. |+.+++|++..++.+..+.+|...|.+++|+|++. ++++++.|+
T Consensus       144 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~  221 (466)
T COG2319         144 --PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG  221 (466)
T ss_pred             --CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence              35678889999999999999999999999885 99999999999999999999999999999999998 555559999


Q ss_pred             cEEEEeCCCCCceeE-EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEe---eCCeeEEEEecCCCE
Q 003842          577 TVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF---KGGTAQMRFQPHLGR  651 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~---~~~~~~v~~sp~~~~  651 (792)
                      .|++||... +..+. .+.+|...+ ...|++++ .++++++.|+.+++|++..... +..+   ...+.++.|.|++..
T Consensus       222 ~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  298 (466)
T COG2319         222 TIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL  298 (466)
T ss_pred             cEEEEECCC-CcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCE
Confidence            999998885 55555 688888875 44899998 4666999999999999987664 4444   346677889998888


Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCCcceEEEeecCCCceE
Q 003842          652 YLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECVHELSCNGNKFH  727 (792)
Q Consensus       652 lla~s~dg~I~i~D~~t~~~~~~l~--~h~~~V~sv~~spdg~~Las~-s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~  727 (792)
                      +++++.|+.+.+||..+........  .|...+..+.|.+++..++.+ ..| .+.+|++....   ......... .+.
T Consensus       299 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~-~~~  374 (466)
T COG2319         299 LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKTLEGHS-NVL  374 (466)
T ss_pred             EEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---eeEEecCCc-eEE
Confidence            8888889889999999887766665  788889999994332555555 456 78889998763   222222222 278


Q ss_pred             EEEEeCCCCEEEE-EEcCCeEEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          728 SCVFHPTYPSLLV-IGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       728 si~fspdg~~L~s-gs~dg~I~IwDl~~~~~~~~~~h~-~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .+.+.+ ...++. +..++.+.+|+............. ..+..+.+++++.++++++.++.+++|+
T Consensus       375 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (466)
T COG2319         375 SVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD  440 (466)
T ss_pred             EEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence            888888 533443 578899999999998887555544 8899999999999999999999999995

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=5.4e-20  Score=194.09  Aligned_cols=247  Identities=16%  Similarity=0.220  Sum_probs=200.1

Q ss_pred             eeeeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEE--eccCC-CCEEEEEECCCCCeEEEEeCCCcEE
Q 003842          504 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN--LEEHS-SLITDVRFSPSMPRLATSSFDKTVR  579 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~~~~~--l~~h~-~~V~~i~fspdg~~Lasgs~Dg~V~  579 (792)
                      .+..+.-...+|.+++|.|+|. .+++++....++.||+.+.+..+.  +.++. ..+.....++++++|+..+..|.|.
T Consensus       249 ~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~  328 (514)
T KOG2055|consen  249 KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIH  328 (514)
T ss_pred             hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEE
Confidence            4555666678899999999999 999999999999999998765443  33433 4577888899999999999999999


Q ss_pred             EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC----CeeEEEEecCCCEEEEE
Q 003842          580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAA  655 (792)
Q Consensus       580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~~~~lla~  655 (792)
                      |....+ +..+..++ -.+.|.+++|+.+++.++ +++.+|.|++||++...|++.+..    +.+.++.+.++.++++|
T Consensus       329 lLhakT-~eli~s~K-ieG~v~~~~fsSdsk~l~-~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~G  405 (514)
T KOG2055|consen  329 LLHAKT-KELITSFK-IEGVVSDFTFSSDSKELL-ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATG  405 (514)
T ss_pred             eehhhh-hhhhheee-eccEEeeEEEecCCcEEE-EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEec
Confidence            998887 56666665 567899999999987666 555689999999999999998853    35668889999999999


Q ss_pred             EcCCeEEEEECCC------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEeecCCCce
Q 003842          656 AAENVVSILDAET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNKF  726 (792)
Q Consensus       656 s~dg~I~i~D~~t------~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~~~~~~i~~~~~~~~~i  726 (792)
                      +..|.|.|||.++      .+++..+..-...|+++.|++|..+||.|+..   .+++..+.+.....-.-.....-+.+
T Consensus       406 S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v  485 (514)
T KOG2055|consen  406 SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV  485 (514)
T ss_pred             cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence            9999999999654      46777777777889999999999999988864   78888886542211111222334568


Q ss_pred             EEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003842          727 HSCVFHPTYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       727 ~si~fspdg~~L~sgs~dg~I~IwDl~  753 (792)
                      +|++|+|.+.++++|...|.|.+|.+.
T Consensus       486 tc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  486 TCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EEEEecCCCceEEeecCCCceeeEeec
Confidence            999999999999999999999999874

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.7e-21  Score=225.16  Aligned_cols=273  Identities=19%  Similarity=0.283  Sum_probs=215.5

Q ss_pred             EEEEEcCCCC-EEEEEe----------CCCeEEEEECCCCc------eeEEeccCCCCEEEEEECCCCCe----EEEEeC
Q 003842          516 ICCHFSSDGK-LLATGG----------HDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPR----LATSSF  574 (792)
Q Consensus       516 ~~lafspdg~-~Lasgs----------~Dg~I~vWdl~t~~------~~~~l~~h~~~V~~i~fspdg~~----Lasgs~  574 (792)
                      -.++|+|++. ++|+|.          .+.++.||.++...      .+..+. -....++++|.+.+..    ||.|.+
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence            4578999886 666553          34556666554222      222222 3456889999997765    899999


Q ss_pred             CCcEEEEeCCCC-----CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-----eCCeeEEE
Q 003842          575 DKTVRVWDADNP-----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQMR  644 (792)
Q Consensus       575 Dg~V~IWdl~s~-----~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~~~~v~  644 (792)
                      ||.|.+||...-     ...+.++..|.+.|..++|++...+++++|+.||.|+|||++..+.-..+     ...+.+++
T Consensus        89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls  168 (1049)
T KOG0307|consen   89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS  168 (1049)
T ss_pred             CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence            999999998751     23456777899999999999999999999999999999999875543332     35678899


Q ss_pred             EecCCCEEEEE-EcCCeEEEEECCCCeEEEEecCCCC--CeEEEEEcCCCC-EEEEEeCC----eEEEEECCCCCCcceE
Q 003842          645 FQPHLGRYLAA-AAENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGE-LLASVSED----SVRVWTVGSGSEGECV  716 (792)
Q Consensus       645 ~sp~~~~lla~-s~dg~I~i~D~~t~~~~~~l~~h~~--~V~sv~~spdg~-~Las~s~d----~I~IwDl~s~~~~~~i  716 (792)
                      |+....++++. +.+|.+.|||++..+.+..+..+..  .+..|.|+|+.. .|+++++|    .|.+||++...  ..+
T Consensus       169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~  246 (1049)
T KOG0307|consen  169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPL  246 (1049)
T ss_pred             cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cch
Confidence            98887776655 4577999999999988888876655  467899999875 45555544    79999998543  566


Q ss_pred             EEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC-EEEEEeCCCcEEEe
Q 003842          717 HELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG-YVASASHDKFVKLW  791 (792)
Q Consensus       717 ~~~~~~~~~i~si~fspdg-~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~-~LaSgs~DG~I~IW  791 (792)
                      +.+.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+ .+.....++..+.|+|..- .|++++-||.|.||
T Consensus       247 k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  247 KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY  324 (1049)
T ss_pred             hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence            7778999999999999966 88999999999999999999998 6667788999999999765 78888899999987

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=5e-20  Score=189.95  Aligned_cols=313  Identities=18%  Similarity=0.219  Sum_probs=226.2

Q ss_pred             eeeeccCCCCCCCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC------CceeE
Q 003842          475 VESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------LKSKT  548 (792)
Q Consensus       475 v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t------~~~~~  548 (792)
                      |+.||...+..+.....+.+.......--+.+.+.+|.+.|.+|.|+.++++||+|+.|..++||+++.      .+++.
T Consensus        19 i~~FL~QR~i~~~~~~~k~F~~~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~   98 (609)
T KOG4227|consen   19 IESFLCQREIGSVKSVVKTFRPDFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG   98 (609)
T ss_pred             eeeeeeecccCCChhhhhhhchhhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce
Confidence            555665554444333333332222112223456789999999999999999999999999999999863      34444


Q ss_pred             Eec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec--ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEE
Q 003842          549 NLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYW  625 (792)
Q Consensus       549 ~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~--~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iw  625 (792)
                      ... .|...|.|++|...+++|++|..+++|.+.|+++ ...+..+.  ...+.|+.+..+|.. ++|++.+.++.|.+|
T Consensus        99 ~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt-~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~  176 (609)
T KOG4227|consen   99 VMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET-KQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFI  176 (609)
T ss_pred             eccCccccceEEEEEccCCeeEecCCCcceeEeeeccc-ceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEE
Confidence            443 3668999999999999999999999999999998 44444443  234589999999994 567788999999999


Q ss_pred             EcCCCe------eEEEeeCCeeEEEEecCCCEEEE-EEcCCeEEEEECCCCe-EEEEecC------CCCCeEEEEEcCCC
Q 003842          626 SINNGS------CTRVFKGGTAQMRFQPHLGRYLA-AAAENVVSILDAETQA-CRLSLQG------HTKPIDSVCWDPSG  691 (792)
Q Consensus       626 dl~~~~------~~~~~~~~~~~v~~sp~~~~lla-~s~dg~I~i~D~~t~~-~~~~l~~------h~~~V~sv~~spdg  691 (792)
                      |++...      |...+......+.|+|....|++ ....+.+.+||.+... .+....+      ......++.|+|+|
T Consensus       177 D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G  256 (609)
T KOG4227|consen  177 DNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG  256 (609)
T ss_pred             eccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence            998754      22223344567889998876655 5557899999998753 2222211      12234678899999


Q ss_pred             CEEEEEeCC-eEEEEECCCCCCcceEEEeec------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC----------
Q 003842          692 ELLASVSED-SVRVWTVGSGSEGECVHELSC------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE----------  754 (792)
Q Consensus       692 ~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~------~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~----------  754 (792)
                      +.|.+.-.. .-.+||+.+...  .+..+..      ....+.+|+|..|.. |++|+.+-.|++|.+..          
T Consensus       257 ~Q~msiRR~~~P~~~D~~S~R~--~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~I  333 (609)
T KOG4227|consen  257 NQFMSIRRGKCPLYFDFISQRC--FVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQI  333 (609)
T ss_pred             CeehhhhccCCCEEeeeecccc--eeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCcccc
Confidence            988887777 777888876422  2222221      123467788877766 88898888999998743          


Q ss_pred             --------------CcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          755 --------------NKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       755 --------------~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                                    +....+.+|...++.+.|++...+|++.+..+.|+||.
T Consensus       334 G~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  334 GHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             CcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence                          12336789999999999999999999999999999993

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.85  E-value=7e-20  Score=183.30  Aligned_cols=206  Identities=20%  Similarity=0.319  Sum_probs=166.8

Q ss_pred             ccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCC------cee--------EEecccCCCeEEEEEcCCCCeEEEE
Q 003842          551 EEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------YSL--------RTFMGHSASVMSLDFHPNKDDLICS  615 (792)
Q Consensus       551 ~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~------~~i--------~~~~~h~~~V~sl~fspd~~~ll~s  615 (792)
                      ..|.+.|+++...+ .|+++++|+.||.|.|||+.+..      ...        ..-.+|+..|.++.|.|-+.-+|.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            35788999999987 68899999999999999998532      111        1123688899999999988889999


Q ss_pred             EeCCCcEEEEEcCCCeeEEEee--CCeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 003842          616 CDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLG---RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS  690 (792)
Q Consensus       616 gs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~---~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd  690 (792)
                      ++.|.++++||.++......|+  +.+..-+++|-..   .+++|..+-.|++.|+.++.+..++.+|...|.+|.|+|.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS  199 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence            9999999999999988776654  5566667777543   3445556779999999999999999999999999999998


Q ss_pred             CC-EEEEEeCC-eEEEEECCCCC------------CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003842          691 GE-LLASVSED-SVRVWTVGSGS------------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       691 g~-~Las~s~d-~I~IwDl~s~~------------~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~  756 (792)
                      .+ .|++|+.| .|++||++...            ....+..-..|.+.+..++|+.++.++++++.|..+++|+..+|+
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            77 56778888 99999997541            111222234567789999999999999999999999999998775

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.85  E-value=7.2e-20  Score=199.18  Aligned_cols=269  Identities=17%  Similarity=0.280  Sum_probs=213.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF  593 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~  593 (792)
                      .|..++|-|||.-|+.+. +..+.|||...|..+.++++|.+.|.|++|+.||+.|++|+.|+.|.||+-.-++.  ..+
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~--LkY   90 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI--LKY   90 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce--eee
Confidence            799999999999888775 55899999999999999999999999999999999999999999999998764332  222


Q ss_pred             cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 003842          594 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR  672 (792)
Q Consensus       594 ~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~-~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~  672 (792)
                       .|.+.|.|+.|+|-.. .+++|+ -...-+|........+ .....+.+++|..+|.+++.|-.+|+|.+-+....+.+
T Consensus        91 -SH~D~IQCMsFNP~~h-~LasCs-LsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~  167 (1081)
T KOG1538|consen   91 -SHNDAIQCMSFNPITH-QLASCS-LSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV  167 (1081)
T ss_pred             -ccCCeeeEeecCchHH-Hhhhcc-hhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence             5999999999999865 455776 3457789877654433 23345677899999999999999999999865433322


Q ss_pred             E--EecCCCCCeEEEEEcCCC-----CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003842          673 L--SLQGHTKPIDSVCWDPSG-----ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY  744 (792)
Q Consensus       673 ~--~l~~h~~~V~sv~~spdg-----~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d  744 (792)
                      .  .-.+.+++|++|+|+|..     ..+++...+ ++.+|.+..    ..+..-..-+....++.+.++|.++++|++|
T Consensus       168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd  243 (1081)
T KOG1538|consen  168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGSD  243 (1081)
T ss_pred             EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccCC
Confidence            2  223467899999999953     367777766 777777643    2333223334456788999999999999999


Q ss_pred             CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          745 QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       745 g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +.+.+|.-+.-..-++...+.+|+.++..|++.+++.|+-||+|-.|+
T Consensus       244 k~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  244 KQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN  291 (1081)
T ss_pred             CceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence            999999866555557777889999999999999999999999997664

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.85  E-value=2e-19  Score=182.27  Aligned_cols=265  Identities=18%  Similarity=0.281  Sum_probs=203.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCC-----C-------ceeEEec-cCCCCEEEEEEC-------CCCCeEEEEeC
Q 003842          515 VICCHFSSDGKLLATGGHDKKAVLWHTDT-----L-------KSKTNLE-EHSSLITDVRFS-------PSMPRLATSSF  574 (792)
Q Consensus       515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t-----~-------~~~~~l~-~h~~~V~~i~fs-------pdg~~Lasgs~  574 (792)
                      ...+.|+|||..|++-+.|..+.+|++..     .       +...+++ .....|.+.+|-       |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            55789999999999999999999998741     1       1111111 235668888886       56779999999


Q ss_pred             CCcEEEEeCCCCCceeEEecc--cCC---CeEEEEEcCCCCeEEEEEeCCCcEEEEEc-CCCeeEEEe----------eC
Q 003842          575 DKTVRVWDADNPGYSLRTFMG--HSA---SVMSLDFHPNKDDLICSCDGDGEIRYWSI-NNGSCTRVF----------KG  638 (792)
Q Consensus       575 Dg~V~IWdl~s~~~~i~~~~~--h~~---~V~sl~fspd~~~ll~sgs~Dg~I~iwdl-~~~~~~~~~----------~~  638 (792)
                      |.-|++||.-+ ++....+.+  |..   ...+++|+|||..|+  ++....|++||+ +.|.....+          .+
T Consensus       132 ~~PIh~wdaft-G~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g  208 (406)
T KOG2919|consen  132 DQPIHLWDAFT-GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG  208 (406)
T ss_pred             cCceeeeeccc-cccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence            99999999988 544444442  333   346899999998776  556899999999 555422211          23


Q ss_pred             CeeEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcce
Q 003842          639 GTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGEC  715 (792)
Q Consensus       639 ~~~~v~~sp~~~-~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~  715 (792)
                      -+.+++|+|... .+++++....+-||.-....++..+.+|.+.|+.++|.++|+.|++|+..  .|..||++...  ..
T Consensus       209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~p  286 (406)
T KOG2919|consen  209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DP  286 (406)
T ss_pred             eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--ch
Confidence            467789999877 56667778899999999999999999999999999999999999999865  99999998643  33


Q ss_pred             EEEeecCCC---ceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CcEE-EEcccCCCeEEEEEeCCCCEEEEEeC
Q 003842          716 VHELSCNGN---KFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NKTM-TLTAHEGLIAALAVSTETGYVASASH  784 (792)
Q Consensus       716 i~~~~~~~~---~i~si~fspdg~~L~sgs~dg~I~IwDl~~-~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~  784 (792)
                      +..+..|..   .-.-+...|++++|++|+.+|.|++||+++ +..+ .+..|...|+.++++|--.++|+++.
T Consensus       287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence            444443332   333455678999999999999999999998 5534 67789999999999999888888764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=1.2e-19  Score=197.80  Aligned_cols=247  Identities=15%  Similarity=0.259  Sum_probs=187.7

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE--eccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEe
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWD  582 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~--l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWd  582 (792)
                      +....|.+.|..+.|-|....|++++.|.++++||++..+++..  +.+|...|.+++|.+.+. .|++|+.||.|.|||
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD  173 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD  173 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence            45668999999999999667899999999999999999888877  889999999999999654 789999999999999


Q ss_pred             CCCCCc--------------------------eeEEecccCCCeEE---EEEcCCCCeEEEEEeC-CCcEEEEEcCCCee
Q 003842          583 ADNPGY--------------------------SLRTFMGHSASVMS---LDFHPNKDDLICSCDG-DGEIRYWSINNGSC  632 (792)
Q Consensus       583 l~s~~~--------------------------~i~~~~~h~~~V~s---l~fspd~~~ll~sgs~-Dg~I~iwdl~~~~~  632 (792)
                      ++..+.                          -+.....+...|.+   +.+..|... |++++. |+.|+|||+++..+
T Consensus       174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t-laSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST-LASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce-eeeccCCCcceEEEeeccccc
Confidence            974320                          01122234444554   445556554 456665 99999999997654


Q ss_pred             EEEe--------------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEecCCCCC--eEEEEEcCCCCEE
Q 003842          633 TRVF--------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKP--IDSVCWDPSGELL  694 (792)
Q Consensus       633 ~~~~--------------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~--~~~~~l~~h~~~--V~sv~~spdg~~L  694 (792)
                      ....              ..+..++.....|.++++.+.|+.|++|++.+.  .++..+.++...  ...-+.+|++.+|
T Consensus       253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l  332 (720)
T KOG0321|consen  253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL  332 (720)
T ss_pred             ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence            4321              123556777777899999999999999999875  344555543322  1223468999999


Q ss_pred             EEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCC
Q 003842          695 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSEN  755 (792)
Q Consensus       695 as~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg-~~L~sgs~dg~I~IwDl~~~  755 (792)
                      ++++.| ..++|.+.+..  .....+.+|...|++++|.|.. .-+++++.|-.++||++..+
T Consensus       333 ~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  333 LSGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             eccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            999999 99999998653  4455677888999999998743 34777799999999999654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=3.6e-21  Score=212.12  Aligned_cols=210  Identities=22%  Similarity=0.345  Sum_probs=187.3

Q ss_pred             CCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCe
Q 003842          489 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR  568 (792)
Q Consensus       489 ~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~  568 (792)
                      ..+.+|.+.+..   .+..|.+|..+|.|+.|+.+..+|++|+.+|+|++||++..+.+++|.+|...|..+.|+|-+.+
T Consensus        50 ~k~~L~~i~kp~---~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~  126 (825)
T KOG0267|consen   50 EKVNLWAIGKPN---AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEF  126 (825)
T ss_pred             eeeccccccCCc---hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEE
Confidence            334445444433   34468999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEE
Q 003842          569 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRF  645 (792)
Q Consensus       569 Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~  645 (792)
                      ++.|+.|+.+++||++. ..+...+.+|...|.++.|+|+|. +++++++|.+++|||+..|+....|+   +.+..+.|
T Consensus       127 ~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~  204 (825)
T KOG0267|consen  127 FASGSTDTDLKIWDIRK-KGCSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEF  204 (825)
T ss_pred             eccccccccceehhhhc-cCceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeeccccccccccccccccccccccc
Confidence            99999999999999997 667888999999999999999986 66699999999999999999998887   66777889


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEE
Q 003842          646 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVR  703 (792)
Q Consensus       646 sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~  703 (792)
                      +|..-.+..|+.|++|++||+++.+.+.........|.|++|+++++.+++|....+.
T Consensus       205 hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  205 HPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS  262 (825)
T ss_pred             CchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence            9998888889999999999999999999888888999999999999999988776444

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=3.2e-19  Score=180.40  Aligned_cols=241  Identities=17%  Similarity=0.246  Sum_probs=181.6

Q ss_pred             EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC----ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEE
Q 003842          548 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR  623 (792)
Q Consensus       548 ~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~----~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~  623 (792)
                      ..+++|.+.|++++|+.||++|++++.|+.|+||+++.-.    .+++.-. .-+..+.+.|.||-..+++++-...+++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEE
Confidence            4577999999999999999999999999999999998511    1222111 1235678999999999998998889999


Q ss_pred             EEEcCCCe---eE------------EEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc
Q 003842          624 YWSINNGS---CT------------RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD  688 (792)
Q Consensus       624 iwdl~~~~---~~------------~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~s  688 (792)
                      +|.+...+   ..            +.....+..+-....+.+|++++.|..|.+||++ +..+..+......-+..+.+
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            99875422   11            0111223334455666788889999999999999 88888887766677788999


Q ss_pred             CCCCEEEEEeCC-eEEEEECCCCC-----CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-------
Q 003842          689 PSGELLASVSED-SVRVWTVGSGS-----EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN-------  755 (792)
Q Consensus       689 pdg~~Las~s~d-~I~IwDl~s~~-----~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~-------  755 (792)
                      |+|++|++++-- .|+||.+--.+     +...+..+.+|...|..++|+++...+++.+.||+++|||.+-.       
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp  317 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP  317 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence            999999999988 89999974332     34556788999999999999999999999999999999998532       


Q ss_pred             cEE-----EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          756 KTM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       756 ~~~-----~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      +++     .+.+..+....++++|+|..||.+. ...|++|
T Consensus       318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~  357 (420)
T KOG2096|consen  318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF  357 (420)
T ss_pred             hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence            111     1122233445899999999887643 3345554

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.84  E-value=9.4e-20  Score=192.24  Aligned_cols=254  Identities=18%  Similarity=0.238  Sum_probs=200.9

Q ss_pred             EECCCCceeEEeccCCCCEEEEEECCCC--CeEEEEeCCCcEEEEeCC---CCCceeEEecccCCCeEEEEEcCCCCeEE
Q 003842          539 WHTDTLKSKTNLEEHSSLITDVRFSPSM--PRLATSSFDKTVRVWDAD---NPGYSLRTFMGHSASVMSLDFHPNKDDLI  613 (792)
Q Consensus       539 Wdl~t~~~~~~l~~h~~~V~~i~fspdg--~~Lasgs~Dg~V~IWdl~---s~~~~i~~~~~h~~~V~sl~fspd~~~ll  613 (792)
                      +|+.+......++.+.+.|++++|+|..  +++++|...|.|-+||+.   .....+..+..|..+|.+|.|+|.+...|
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i  250 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI  250 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence            4455555666677789999999999954  478899999999999995   33345678889999999999999988889


Q ss_pred             EEEeCCCcEEEEEcCCCeeEEEee-----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEecCCCCCeEEEEE
Q 003842          614 CSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCW  687 (792)
Q Consensus       614 ~sgs~Dg~I~iwdl~~~~~~~~~~-----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~-~~~l~~h~~~V~sv~~  687 (792)
                      ++.+.||+|++-|++.......+.     .....+.|+.+...++++..-|.+.+||.++... ...+.-|...|++|++
T Consensus       251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~  330 (498)
T KOG4328|consen  251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL  330 (498)
T ss_pred             eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence            999999999999998764333322     2334566777888888888888999999998755 6667779999999999


Q ss_pred             cCCC-CEEEEEeCC-eEEEEECCCCCCcc-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC----CCcEEEE
Q 003842          688 DPSG-ELLASVSED-SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS----ENKTMTL  760 (792)
Q Consensus       688 spdg-~~Las~s~d-~I~IwDl~s~~~~~-~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~----~~~~~~~  760 (792)
                      +|-. .+|++++.| +++|||++...... ++.....|...|.+..|+|.+..|++.+.|..|+|||..    .......
T Consensus       331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~  410 (498)
T KOG4328|consen  331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT  410 (498)
T ss_pred             CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence            9955 478899999 99999998754433 344555688899999999999889999999999999984    3333333


Q ss_pred             cccCC----C--eEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          761 TAHEG----L--IAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       761 ~~h~~----~--V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ..|..    +  .....|.|+..+|++|..-..|-|||
T Consensus       411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence            33332    2  33568999999999998888888875

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=1.9e-17  Score=181.70  Aligned_cols=282  Identities=31%  Similarity=0.547  Sum_probs=227.7

Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEEeccCC-CCEEEEEE-CCCCC-eEEEEeC-CCcEEEE
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHS-SLITDVRF-SPSMP-RLATSSF-DKTVRVW  581 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~-~~~~l~~h~-~~V~~i~f-spdg~-~Lasgs~-Dg~V~IW  581 (792)
                      .+..|...|.++.|.+++..++.++.|+.+.+|+..... .+..+..+. ..+..+.+ .+++. +++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            567899999999999999999999999999999999887 677776644 37787777 88887 5555445 9999999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEE-E
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA-A  656 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~-Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~-s  656 (792)
                      |+.........+..|...|.+++|+|++. ++++++. |+.+++|++..+..+..+..   .+.++.|++++..++++ +
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  218 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS  218 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence            99864567788889999999999999987 4446664 99999999998777776654   67888999888745555 7


Q ss_pred             cCCeEEEEECCCCeEEE-EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 003842          657 AENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT  734 (792)
Q Consensus       657 ~dg~I~i~D~~t~~~~~-~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspd  734 (792)
                      .|+.|.+||...+..+. .+..|...+ ...|++++.++++++.+ .+++|++.....  .+..+..|...+.++.|.|+
T Consensus       219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~  295 (466)
T COG2319         219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPD  295 (466)
T ss_pred             CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCC
Confidence            89999999999888877 688888775 44899999888888888 999999986643  23333567888999999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCcEE-EE--cccCCCeEEEEEeCCCCEEEEE-eCCCcEEEeC
Q 003842          735 YPSLLVIGCYQSLELWNMSENKTM-TL--TAHEGLIAALAVSTETGYVASA-SHDKFVKLWK  792 (792)
Q Consensus       735 g~~L~sgs~dg~I~IwDl~~~~~~-~~--~~h~~~V~sl~fspdg~~LaSg-s~DG~I~IWd  792 (792)
                      +..+++++.|+.+.+||..+.... ..  ..|...|..+.|.+++..++.+ ..|+.+++|+
T Consensus       296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  357 (466)
T COG2319         296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD  357 (466)
T ss_pred             CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence            988998998988999999888766 33  3688889999994332455555 6788898885

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=3.6e-19  Score=188.73  Aligned_cols=279  Identities=17%  Similarity=0.232  Sum_probs=209.0

Q ss_pred             eeEeCCCcchhhcccccccCCCCCCceeeeccCC----CCCCCCCCCcceeccCCc-ceeeeeeeecCCCCeEEEEEcCC
Q 003842          449 QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD----DTDPRDAGGRGMDVSQGF-SFKEANSVRASTSKVICCHFSSD  523 (792)
Q Consensus       449 ~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d----~~~~~d~~~~~~d~~~~~-~~~~~~~l~~H~~~V~~lafspd  523 (792)
                      +|||+...+...++...-...  ......|-...    ..-..|...++|+..... ....+..+.+  +.-.|++....
T Consensus        15 kl~D~s~~~~~~~~~~~t~~p--g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~   90 (673)
T KOG4378|consen   15 KLSDFSDLETKSEYVHQTAEP--GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQ   90 (673)
T ss_pred             EEeecccccCccccccCCCCC--cceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhc
Confidence            889998877666554333221  12222221111    122345555555544331 1222222222  25566666666


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEeccc-CCCeEE
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMS  602 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h-~~~V~s  602 (792)
                      ..|+++|+..+.|+|||+....+.+.+++|...|+++.|+....|||+++..|.|.|..+.+ +.....|... ...|.-
T Consensus        91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~~sgqsvRl  169 (673)
T KOG4378|consen   91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTIDSGQSVRL  169 (673)
T ss_pred             ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-CccccceecCCCCeEEE
Confidence            68999999999999999998888888999999999999999999999999999999999988 4444455433 455668


Q ss_pred             EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE----eeCCeeEEEEecCCCEE-EEEEcCCeEEEEECCCCeEEEEecC
Q 003842          603 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTAQMRFQPHLGRY-LAAAAENVVSILDAETQACRLSLQG  677 (792)
Q Consensus       603 l~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~~~~~~v~~sp~~~~l-la~s~dg~I~i~D~~t~~~~~~l~~  677 (792)
                      +.|++..+.+|.+++.+|.|.+||+.....+..    +..+...++|+|....| ++.+.|..|.+||.+..+....+. 
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-  248 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-  248 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-
Confidence            999999999999999999999999987766544    35677889999987665 557779999999999877666655 


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003842          678 HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY  735 (792)
Q Consensus       678 h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg  735 (792)
                      ...+...++|.++|.+|+.|... .|+.||++..+  .++..+..|...|++++|-+.-
T Consensus       249 y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  249 YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEEEeeecc
Confidence            45678999999999999999988 99999998653  5677778888899999998764

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.82  E-value=8.9e-20  Score=180.41  Aligned_cols=283  Identities=18%  Similarity=0.200  Sum_probs=202.3

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      ++..+++|.+.|+|+.|..+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+.-.|+ ..|.+-+.|+.+.+|+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT   83 (323)
T ss_pred             CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence            5677889999999999998885 8899999999999999999988888 67888999999887 5888999999999999


Q ss_pred             CCCCCceeEEecccCCCeEEEEEcCCC-----C---eEEEEEeCC-CcEEEEEcCCCeeEEEee-------CCeeEEEEe
Q 003842          583 ADNPGYSLRTFMGHSASVMSLDFHPNK-----D---DLICSCDGD-GEIRYWSINNGSCTRVFK-------GGTAQMRFQ  646 (792)
Q Consensus       583 l~s~~~~i~~~~~h~~~V~sl~fspd~-----~---~ll~sgs~D-g~I~iwdl~~~~~~~~~~-------~~~~~v~~s  646 (792)
                      +.. ...+   ..|.-.++++-|++..     +   .+++.-++. ..+.+-|......+...+       +.+.+..+.
T Consensus        84 ia~-s~~i---~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~  159 (323)
T KOG0322|consen   84 IAY-SAFI---SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD  159 (323)
T ss_pred             ccC-cceE---EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence            985 2222   2233445555555421     1   111111100 001112221111111111       122222322


Q ss_pred             c-CCC--EEEEEEcCCeEEEEECCCC----------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-
Q 003842          647 P-HLG--RYLAAAAENVVSILDAETQ----------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-  711 (792)
Q Consensus       647 p-~~~--~lla~s~dg~I~i~D~~t~----------~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~-  711 (792)
                      . .+.  .+++|..+|.|.+||+.++          +.+.....|..+|.++.|.+.-..=++++.+ .+..|.+.... 
T Consensus       160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g  239 (323)
T KOG0322|consen  160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG  239 (323)
T ss_pred             ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence            2 122  3556777999999999997          3344455689999999999866655666666 88888886431 


Q ss_pred             CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003842          712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL  790 (792)
Q Consensus       712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I  790 (792)
                      ....-.++......+..+.+-||++.+++++.|+.|+||..++...+ .+..|.+.|++++|+|+..++|+++.|+.|.+
T Consensus       240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL  319 (323)
T KOG0322|consen  240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL  319 (323)
T ss_pred             cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence            11222333344566888999999999999999999999999999988 67789999999999999999999999999999


Q ss_pred             eC
Q 003842          791 WK  792 (792)
Q Consensus       791 Wd  792 (792)
                      |+
T Consensus       320 Wk  321 (323)
T KOG0322|consen  320 WK  321 (323)
T ss_pred             ee
Confidence            96

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.82  E-value=2.3e-18  Score=186.70  Aligned_cols=134  Identities=24%  Similarity=0.430  Sum_probs=109.3

Q ss_pred             CCeEEEEECCCC-eE----EEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCC----CcceEEEeecCCCce
Q 003842          658 ENVVSILDAETQ-AC----RLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGS----EGECVHELSCNGNKF  726 (792)
Q Consensus       658 dg~I~i~D~~t~-~~----~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~----~~~~i~~~~~~~~~i  726 (792)
                      .|.|-||+++.. ++    +-.+. ....|+.+.|+| |...|+++++| .|++|.+..+.    ....-..+..|..+|
T Consensus       602 gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI  680 (1012)
T KOG1445|consen  602 GGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKI  680 (1012)
T ss_pred             CceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceE
Confidence            566777776543 11    11111 345699999999 67789999999 99999997653    234556788899999


Q ss_pred             EEEEEeCC-CCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          727 HSCVFHPT-YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       727 ~si~fspd-g~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +++.|+|- .+.|++++.|-+|++||+.+.+.. .+.+|.+.|.+++|+|||+.+|+.+.||+|++|+
T Consensus       681 ~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~  748 (1012)
T KOG1445|consen  681 TSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE  748 (1012)
T ss_pred             EEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence            99999994 467889999999999999998877 8899999999999999999999999999999985

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.8e-18  Score=174.83  Aligned_cols=273  Identities=16%  Similarity=0.236  Sum_probs=202.4

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ..++.|++-|.+++.+..+   -|||..|..                                              ..+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~----------------------------------------------iar   59 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR----------------------------------------------IAR   59 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc----------------------------------------------hhh
Confidence            3478999999998886555   678766543                                              224


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADN  585 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s  585 (792)
                      .+.+|..+|.|++||+||++|++++.|..|.+||+..|.+++.+. ...+|+.+.|+|... .+++.-.+..-.+-++..
T Consensus        60 ~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~  138 (405)
T KOG1273|consen   60 MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD  138 (405)
T ss_pred             hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence            567899999999999999999999999999999999999888886 567899999999543 444444444455556654


Q ss_pred             CCceeEEecc---cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC----CeeEEEEecCCCEEEEEEcC
Q 003842          586 PGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       586 ~~~~i~~~~~---h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~~~~lla~s~d  658 (792)
                      +...+.....   ......+..|.+.|+ +|++|...|.+.++|..+.+++..++-    .+..+.++..+..++.-+.|
T Consensus       139 ~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD  217 (405)
T KOG1273|consen  139 PKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD  217 (405)
T ss_pred             CceeeccCCCccccccccccccccCCCC-EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC
Confidence            2211111110   111122345777776 555999999999999999999887763    45678899999999999999


Q ss_pred             CeEEEEECCCC-------eE--EEEecC--CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCC-C
Q 003842          659 NVVSILDAETQ-------AC--RLSLQG--HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNG-N  724 (792)
Q Consensus       659 g~I~i~D~~t~-------~~--~~~l~~--h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~-~  724 (792)
                      ..|+.|+++.-       ++  ...+..  ....-.+++|+.+|.|++.++..  .++||.-..|   ..++.+.+.. .
T Consensus       218 RvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~kgE  294 (405)
T KOG1273|consen  218 RVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGTKGE  294 (405)
T ss_pred             ceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCCchh
Confidence            99999998631       11  111111  22335678999999999999876  8999999887   6777777766 5


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003842          725 KFHSCVFHPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       725 ~i~si~fspdg~~L~sgs~dg~I~IwDl~~  754 (792)
                      ....+.|+|-...|++. ..|.|+||....
T Consensus       295 ~l~DV~whp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  295 ELLDVNWHPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             heeecccccceeeeeec-cCCceEEEEeec
Confidence            57889999998877777 678999998754

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=6.1e-19  Score=190.90  Aligned_cols=241  Identities=20%  Similarity=0.264  Sum_probs=197.8

Q ss_pred             eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEE
Q 003842          546 SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW  625 (792)
Q Consensus       546 ~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iw  625 (792)
                      +...+.+|.+.|.+|...|.|.+|++|+.||+|+||.+.+ +.+++++. ..+.|.||+|+|.....+++...+..+.|.
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence            4456789999999999999999999999999999999998 77888776 566899999999877655555545555555


Q ss_pred             EcCCCe---------------------------------------eEE-EeeCCeeEEEEecCCCEEEEEEcC---CeEE
Q 003842          626 SINNGS---------------------------------------CTR-VFKGGTAQMRFQPHLGRYLAAAAE---NVVS  662 (792)
Q Consensus       626 dl~~~~---------------------------------------~~~-~~~~~~~~v~~sp~~~~lla~s~d---g~I~  662 (792)
                      +..-|.                                       |+. .....+..+.|+..|.+|+++..+   ..|.
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence            533221                                       111 112346678899999999988774   4799


Q ss_pred             EEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003842          663 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG  742 (792)
Q Consensus       663 i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs  742 (792)
                      |+++...+...-|....+.|.++.|+|...+|++++...|+|||+...   ..++.+......|..++++|.|..|++++
T Consensus       550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs  626 (733)
T KOG0650|consen  550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGS  626 (733)
T ss_pred             EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence            999988877766766678899999999999999999999999999764   55666666777899999999999999999


Q ss_pred             cCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          743 CYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       743 ~dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      .|+.++.||+.-....  ++..|...|++++|++.-.++++|+.||.+.||
T Consensus       627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence            9999999999766433  788999999999999999999999999999886

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.80  E-value=5e-20  Score=205.18  Aligned_cols=274  Identities=22%  Similarity=0.388  Sum_probs=214.8

Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      .+.++.+.+|...|+|+.|...|.++++|+.|..|+||..+++.+...+.+|.+.|++++.+.++.++++++.|..|++|
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE-----e--eCCeeEEEEecCCCEEEE
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----F--KGGTAQMRFQPHLGRYLA  654 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~-----~--~~~~~~v~~sp~~~~lla  654 (792)
                      .+.. +.++..+.+|.+.|++|+|+|-.     +.+.||++++||.+-.-.+..     +  +.-+..+.|...+..+++
T Consensus       260 rl~~-~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  260 RLPD-GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             ecCC-CchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence            9998 88899999999999999999863     678899999999982211111     1  122344556667777888


Q ss_pred             EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe
Q 003842          655 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH  732 (792)
Q Consensus       655 ~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fs  732 (792)
                      ++.|+.-..|.......      +...+.-+.++.+- .+.++.-.+ .+++|++.++   ...+.+.+|...+..+.++
T Consensus       334 gs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~H  404 (1113)
T KOG0644|consen  334 GSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVH  404 (1113)
T ss_pred             ccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeec
Confidence            88888877776543211      11112222222222 344455555 8999999877   6677778888999999999


Q ss_pred             CCCCEE-EEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          733 PTYPSL-LVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       733 pdg~~L-~sgs~dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      |-...+ ..++.||.+.|||+..+..+  ...+| +.+...+|++||..++...+-|.++|.
T Consensus       405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~  465 (1113)
T KOG0644|consen  405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYIL  465 (1113)
T ss_pred             CCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence            966544 57789999999999988776  34454 456677999999998877777888775

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=4.4e-18  Score=177.50  Aligned_cols=270  Identities=22%  Similarity=0.314  Sum_probs=192.0

Q ss_pred             cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC--------C--------CceeEEeccCCCCEEEEEEC
Q 003842          500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------T--------LKSKTNLEEHSSLITDVRFS  563 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~--------t--------~~~~~~l~~h~~~V~~i~fs  563 (792)
                      ...+....|..|...|++|.|+|+|++||+|+.+|.|.+|-..        +        ....+.+.+|...|..++|+
T Consensus        53 ~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws  132 (434)
T KOG1009|consen   53 MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS  132 (434)
T ss_pred             eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc
Confidence            3556778899999999999999999999999999999999755        2        34556778899999999999


Q ss_pred             CCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe-eE
Q 003842          564 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT-AQ  642 (792)
Q Consensus       564 pdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~-~~  642 (792)
                      +++.++++++.|..+++||+.. +..+..+.+|...|..++|.|-+. ++++-+.|...+.+++.....+..+...+ ..
T Consensus       133 ~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~  210 (434)
T KOG1009|consen  133 PDSNFLVSGSVDNSVRLWDVHA-GQLLAILDDHEHYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA  210 (434)
T ss_pred             CCCceeeeeeccceEEEEEecc-ceeEeeccccccccceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeee
Confidence            9999999999999999999998 788899999999999999999865 55577778878887776655444332100 00


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC------C----eEEEEECCCCCC
Q 003842          643 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE------D----SVRVWTVGSGSE  712 (792)
Q Consensus       643 v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~------d----~I~IwDl~s~~~  712 (792)
                      ..+....        ....++|--++.+         .-...++|+|+|.+|++.+.      +    ..++|+-.  ..
T Consensus       211 ~~~~~~e--------~~s~rLfhDeTlk---------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk--~l  271 (434)
T KOG1009|consen  211 KAFNERE--------GKSTRLFHDETLK---------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRK--DL  271 (434)
T ss_pred             cccCCCC--------cceeeeeecCchh---------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccc--cc
Confidence            0111110        1123333333222         22455778888887776432      1    23444432  12


Q ss_pred             cceEEEeecCCCceEEEEEeC-----------------CCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEe
Q 003842          713 GECVHELSCNGNKFHSCVFHP-----------------TYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVS  773 (792)
Q Consensus       713 ~~~i~~~~~~~~~i~si~fsp-----------------dg~~L~sgs~dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fs  773 (792)
                      ..++..+.+.......+.|+|                 -++.+++....+.|+|||..+..++  .-.-|-..|++++|+
T Consensus       272 ~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws  351 (434)
T KOG1009|consen  272 KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWS  351 (434)
T ss_pred             cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeec
Confidence            233444444444444444433                 2345666667789999999998777  334688999999999


Q ss_pred             CCCCEEEEEeCCCcEEE
Q 003842          774 TETGYVASASHDKFVKL  790 (792)
Q Consensus       774 pdg~~LaSgs~DG~I~I  790 (792)
                      +||.+|+..+.||...+
T Consensus       352 ~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  352 DDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             CCCcEEEEeccCCceEE
Confidence            99999999999997653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=3.8e-19  Score=192.14  Aligned_cols=256  Identities=21%  Similarity=0.326  Sum_probs=195.9

Q ss_pred             eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC--------CCceeEEeccCCCCEEEEEECCCCCeEEEEeC
Q 003842          503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------TLKSKTNLEEHSSLITDVRFSPSMPRLATSSF  574 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~--------t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~  574 (792)
                      ....+++.|.+.|..++|.+....|++++.||+|.+|++.        ..+.+.+|.+|.++|.|+++.+++..+++|+.
T Consensus       285 ~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~  364 (577)
T KOG0642|consen  285 NIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI  364 (577)
T ss_pred             ceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence            3344899999999999999999999999999999999993        24577889999999999999999999999999


Q ss_pred             CCcEEEEeCCCC---------CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCe--
Q 003842          575 DKTVRVWDADNP---------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGT--  640 (792)
Q Consensus       575 Dg~V~IWdl~s~---------~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~--  640 (792)
                      ||+|+.|++...         ......+.||.+.|+.++++..... |++|+.||+|+.|+...... ..|.   ...  
T Consensus       365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P  442 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP  442 (577)
T ss_pred             CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence            999999966421         1344577899999999999998665 55999999999999877655 3332   122  


Q ss_pred             eEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecCC-------CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 003842          641 AQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGH-------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS  711 (792)
Q Consensus       641 ~~v~~sp~~-~~lla~s~dg~I~i~D~~t~~~~~~l~~h-------~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~  711 (792)
                      ..+.+.... ...++...-+.-.++|.+....+..+...       ...+.-|.++|.+.+.+++.+| .|+++|..++ 
T Consensus       443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~-  521 (577)
T KOG0642|consen  443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG-  521 (577)
T ss_pred             ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc-
Confidence            223332221 12222222333344444444333333221       1346778899999999999999 9999999887 


Q ss_pred             CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEccc
Q 003842          712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH  763 (792)
Q Consensus       712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h  763 (792)
                        ..++....|...++++++.|+|.+|++++.|+.|++|.+....++ ....|
T Consensus       522 --~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  522 --KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             --ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence              788888889999999999999999999999999999999877665 33344

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=3e-19  Score=189.65  Aligned_cols=291  Identities=19%  Similarity=0.309  Sum_probs=226.4

Q ss_pred             ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECC--CCCeEEEEeCCCc
Q 003842          501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSP--SMPRLATSSFDKT  577 (792)
Q Consensus       501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fsp--dg~~Lasgs~Dg~  577 (792)
                      .+.....|..|.+.|..|.|+..|..|++|+.|..|.+||+..++.+..+. +|...|.-..|.|  +...|++++.||.
T Consensus       131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            345667789999999999999999999999999999999999988887775 7998898888988  4458999999999


Q ss_pred             EEEEeCCCCCce--eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---------CCeeEEEEe
Q 003842          578 VRVWDADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQMRFQ  646 (792)
Q Consensus       578 V~IWdl~s~~~~--i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---------~~~~~v~~s  646 (792)
                      |++=.+...+..  ...+..|.+.|..++.-|+..+-|++|+.|+.+.-+|++.+.....+.         .....++..
T Consensus       211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~  290 (559)
T KOG1334|consen  211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD  290 (559)
T ss_pred             eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence            999888764543  345667999999999999999999999999999999998875443321         134567788


Q ss_pred             cCCC-EEEEEEcCCeEEEEECCCCe------EEEEec------CCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCC
Q 003842          647 PHLG-RYLAAAAENVVSILDAETQA------CRLSLQ------GHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSE  712 (792)
Q Consensus       647 p~~~-~lla~s~dg~I~i~D~~t~~------~~~~l~------~h~~~V~sv~~spdg~-~Las~s~d~I~IwDl~s~~~  712 (792)
                      |... .+++++.|-.+++||.+.-.      .+..+.      .....|+|++|+.++. +|++..+..|++|.-..+.-
T Consensus       291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G  370 (559)
T KOG1334|consen  291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG  370 (559)
T ss_pred             CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence            8776 56777889999999987532      122222      2234699999997665 55544444899995433211


Q ss_pred             --c-------ceEE-EeecCCCc--eEEEE-EeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 003842          713 --G-------ECVH-ELSCNGNK--FHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY  778 (792)
Q Consensus       713 --~-------~~i~-~~~~~~~~--i~si~-fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~  778 (792)
                        .       ..+. .+++|.+.  |..+- |-|...|+++|+.-|.|.||+-.+++++ .+.+-...|+||.-+|--.+
T Consensus       371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv  450 (559)
T KOG1334|consen  371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV  450 (559)
T ss_pred             CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence              0       1222 25666544  55554 5788899999999999999999999988 45555558999999999999


Q ss_pred             EEEEeCCCcEEEe
Q 003842          779 VASASHDKFVKLW  791 (792)
Q Consensus       779 LaSgs~DG~I~IW  791 (792)
                      ||++|-|..||||
T Consensus       451 LAsSGid~DVKIW  463 (559)
T KOG1334|consen  451 LASSGIDHDVKIW  463 (559)
T ss_pred             hhccCCccceeee
Confidence            9999999999999

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=9.6e-17  Score=175.79  Aligned_cols=262  Identities=13%  Similarity=0.156  Sum_probs=184.1

Q ss_pred             CCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECC-CCce--eEEeccCCCCEEEEEEC
Q 003842          488 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTD-TLKS--KTNLEEHSSLITDVRFS  563 (792)
Q Consensus       488 d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs-~Dg~I~vWdl~-t~~~--~~~l~~h~~~V~~i~fs  563 (792)
                      +..+..|++.....++.+..+.. .+.+..++|+||+++|++++ .++.|.+|+++ +++.  +.... .......|+|+
T Consensus        11 ~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~   88 (330)
T PRK11028         11 SQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTD   88 (330)
T ss_pred             CCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEEC
Confidence            45667777754445556666653 46688899999999987765 47889999986 3432  22222 33456789999


Q ss_pred             CCCCeEEEEeC-CCcEEEEeCCCCCce---eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-----
Q 003842          564 PSMPRLATSSF-DKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-----  634 (792)
Q Consensus       564 pdg~~Lasgs~-Dg~V~IWdl~s~~~~---i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~-----  634 (792)
                      |++++|++++. ++.|.+|++++.+..   +..+. +.....+++|+|+++.++++...++.|++||+++...+.     
T Consensus        89 ~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~  167 (330)
T PRK11028         89 HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA  167 (330)
T ss_pred             CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence            99998888765 889999999753322   22222 334567889999999888888889999999998633221     


Q ss_pred             --Ee--eCCeeEEEEecCCCEEEEEEc-CCeEEEEECCC--C--eEEEEecCC------CCCeEEEEEcCCCCEEEEEeC
Q 003842          635 --VF--KGGTAQMRFQPHLGRYLAAAA-ENVVSILDAET--Q--ACRLSLQGH------TKPIDSVCWDPSGELLASVSE  699 (792)
Q Consensus       635 --~~--~~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t--~--~~~~~l~~h------~~~V~sv~~spdg~~Las~s~  699 (792)
                        ..  ......+.|+|++.+++++.. ++.|.+||++.  +  +.+..+..+      ......+.|+|++++|+++..
T Consensus       168 ~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~  247 (330)
T PRK11028        168 EVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR  247 (330)
T ss_pred             ceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC
Confidence              11  123467899999999988877 89999999973  2  333333221      123346889999999998865


Q ss_pred             C--eEEEEECCCCC-CcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003842          700 D--SVRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS  753 (792)
Q Consensus       700 d--~I~IwDl~s~~-~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~  753 (792)
                      .  .|.+|++.... ..+.+..... ......+.|+|+|++|+++.. +++|.+|+++
T Consensus       248 ~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        248 TASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            3  89999996542 2223333332 234567899999999998876 7899999874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=7.9e-17  Score=176.44  Aligned_cols=262  Identities=12%  Similarity=0.181  Sum_probs=181.4

Q ss_pred             EEEeCCCeEEEEECCC-Cc--eeEEeccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCce--eEEecccCCCeE
Q 003842          528 ATGGHDKKAVLWHTDT-LK--SKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYS--LRTFMGHSASVM  601 (792)
Q Consensus       528 asgs~Dg~I~vWdl~t-~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs-~Dg~V~IWdl~s~~~~--i~~~~~h~~~V~  601 (792)
                      ++...++.|.+||+.+ ++  .+..+. +.+....++|+|++++|++++ .++.|.+|+++..+..  +... .......
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~   83 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPT   83 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCce
Confidence            3446789999999964 33  444444 345678899999999887765 4788999999743322  2222 2334567


Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEEcCCC-e---eEEEee--CCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEE-
Q 003842          602 SLDFHPNKDDLICSCDGDGEIRYWSINNG-S---CTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRL-  673 (792)
Q Consensus       602 sl~fspd~~~ll~sgs~Dg~I~iwdl~~~-~---~~~~~~--~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~-  673 (792)
                      .++|+|+++.++++...++.|.+|++++. .   .+..+.  .+...++++|++++++++.. ++.|.+||+++...+. 
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            89999999988877777999999999743 2   222222  24566889999999877665 6899999997643221 


Q ss_pred             ------EecCCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCC-CCcceEEEeecC------CCceEEEEEeCCCCEE
Q 003842          674 ------SLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSG-SEGECVHELSCN------GNKFHSCVFHPTYPSL  738 (792)
Q Consensus       674 ------~l~~h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s~-~~~~~i~~~~~~------~~~i~si~fspdg~~L  738 (792)
                            .+. .......++|+|+|++|+++.. + .|.+||+... ...+.+..+...      ......+.|+|+++++
T Consensus       164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l  242 (330)
T PRK11028        164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL  242 (330)
T ss_pred             cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence                  111 1234578999999999988876 3 9999999742 122333333221      1123468899999999


Q ss_pred             EEEEc-CCeEEEEECCCCc-EEEEccc---CCCeEEEEEeCCCCEEEEEeC-CCcEEEeC
Q 003842          739 LVIGC-YQSLELWNMSENK-TMTLTAH---EGLIAALAVSTETGYVASASH-DKFVKLWK  792 (792)
Q Consensus       739 ~sgs~-dg~I~IwDl~~~~-~~~~~~h---~~~V~sl~fspdg~~LaSgs~-DG~I~IWd  792 (792)
                      +++.. ++.|.+|++.... ...+..+   ......+.|++||++|++++. +++|.||+
T Consensus       243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence            99865 5799999986532 2222222   235668999999999998776 89999984

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.80  E-value=2.1e-18  Score=178.15  Aligned_cols=205  Identities=27%  Similarity=0.437  Sum_probs=162.7

Q ss_pred             ccCCCCEEEEEECCCC--CeEEEEeCCCcEEEEeCCC---------------CCceeEEecccCCCeEEEEEcCCCCeEE
Q 003842          551 EEHSSLITDVRFSPSM--PRLATSSFDKTVRVWDADN---------------PGYSLRTFMGHSASVMSLDFHPNKDDLI  613 (792)
Q Consensus       551 ~~h~~~V~~i~fspdg--~~Lasgs~Dg~V~IWdl~s---------------~~~~i~~~~~h~~~V~sl~fspd~~~ll  613 (792)
                      ..|.+.|+.+.-.+-+  .+.++-+..|.|.|||+..               ...++.++.+|...=++|+|+|-..-.+
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            3577888888777754  4566667899999999963               1346778888988888999998554446


Q ss_pred             EEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-C
Q 003842          614 CSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-E  692 (792)
Q Consensus       614 ~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg-~  692 (792)
                      ++|..-+.|++|...++....                                .    ...|.+|+..|-.++|+|.. .
T Consensus       228 lsGDc~~~I~lw~~~~g~W~v--------------------------------d----~~Pf~gH~~SVEDLqWSptE~~  271 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKV--------------------------------D----QRPFTGHTKSVEDLQWSPTEDG  271 (440)
T ss_pred             ccCccccceEeeeeccCceee--------------------------------c----CccccccccchhhhccCCccCc
Confidence            677777778888766543211                                0    12345699999999999965 4


Q ss_pred             EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE---E-EEcccCCCe
Q 003842          693 LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT---M-TLTAHEGLI  767 (792)
Q Consensus       693 ~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~---~-~~~~h~~~V  767 (792)
                      .|++|+.| +|+|||++.+....++.. +.|...|+.|.|+.+..+|++|+.||+++|||++..+.   + .+..|..+|
T Consensus       272 vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI  350 (440)
T KOG0302|consen  272 VFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI  350 (440)
T ss_pred             eEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence            88999999 999999999866666665 78888999999999999999999999999999986543   3 788999999


Q ss_pred             EEEEEeC-CCCEEEEEeCCCcEEEeC
Q 003842          768 AALAVST-ETGYVASASHDKFVKLWK  792 (792)
Q Consensus       768 ~sl~fsp-dg~~LaSgs~DG~I~IWd  792 (792)
                      ++|.|+| +...|+++|.|..|.|||
T Consensus       351 tsieW~p~e~s~iaasg~D~QitiWD  376 (440)
T KOG0302|consen  351 TSIEWHPHEDSVIAASGEDNQITIWD  376 (440)
T ss_pred             eEEEeccccCceEEeccCCCcEEEEE
Confidence            9999998 456788889999999997

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=7.6e-18  Score=177.53  Aligned_cols=234  Identities=15%  Similarity=0.328  Sum_probs=179.5

Q ss_pred             EEEEEECC-------CCCeEEEEeCCCcEEEEeCCCCC--ceeEE------------------ecccCCCeEEEEEcCCC
Q 003842          557 ITDVRFSP-------SMPRLATSSFDKTVRVWDADNPG--YSLRT------------------FMGHSASVMSLDFHPNK  609 (792)
Q Consensus       557 V~~i~fsp-------dg~~Lasgs~Dg~V~IWdl~s~~--~~i~~------------------~~~h~~~V~sl~fspd~  609 (792)
                      -.|+.|..       .|+++|.|+.|..|.|||++-..  .+...                  -.+|+..|.+++|+..-
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            35677743       36699999999999999997311  11111                  22688889999999998


Q ss_pred             CeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEE
Q 003842          610 DDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSV  685 (792)
Q Consensus       610 ~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~-~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv  685 (792)
                      .++|++|+.|.+|++||+.++++..++.   ..+.++.|++... .+++|+.|++|.++|.+............+.|-.+
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv  335 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV  335 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence            9999999999999999999999988765   5678899999875 56778889999999999532221111244679999


Q ss_pred             EEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEEEEcc
Q 003842          686 CWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTMTLTA  762 (792)
Q Consensus       686 ~~spdg~-~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg-~~L~sgs~dg~I~IwDl~~~~~~~~~~  762 (792)
                      +|.+... .++++++| +|+-+|++...  +++..+..|...|.+++++..- ..+++++.|+.|++|++..........
T Consensus       336 ~w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~  413 (463)
T KOG0270|consen  336 AWDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE  413 (463)
T ss_pred             EecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc
Confidence            9999766 44555566 99999998654  8999999999999999998865 467788999999999997765543333


Q ss_pred             cC---CCeEEEEEeCCCC-EEEEEeCCCcEEEeC
Q 003842          763 HE---GLIAALAVSTETG-YVASASHDKFVKLWK  792 (792)
Q Consensus       763 h~---~~V~sl~fspdg~-~LaSgs~DG~I~IWd  792 (792)
                      |.   +...|+++.|+-. +||.||..+.++|||
T Consensus       414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd  447 (463)
T KOG0270|consen  414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD  447 (463)
T ss_pred             ccccccceeecccCCCcceEEEecCccceEEEee
Confidence            33   2356667777654 677888888999997

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.2e-18  Score=176.37  Aligned_cols=267  Identities=17%  Similarity=0.295  Sum_probs=190.3

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECC--CCCeEEEEeCCCcEEEEeCCCCCce-eEEecccC-CCe
Q 003842          525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDADNPGYS-LRTFMGHS-ASV  600 (792)
Q Consensus       525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWdl~s~~~~-i~~~~~h~-~~V  600 (792)
                      ..+|++...|.|++||..++..+..++++...++.++|..  ....+.+|+.||+|++||++...+. ...+..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5789999999999999999999999999999999999987  4568999999999999999985543 33444555 455


Q ss_pred             EEEEEcCCCCeEEEEEeC----CCcEEEEEcCCCee-EEE----eeCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCCe
Q 003842          601 MSLDFHPNKDDLICSCDG----DGEIRYWSINNGSC-TRV----FKGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQA  670 (792)
Q Consensus       601 ~sl~fspd~~~ll~sgs~----Dg~I~iwdl~~~~~-~~~----~~~~~~~v~~sp~~~-~lla~s~dg~I~i~D~~t~~  670 (792)
                      .|++.... ..++++|..    |..|.+||++.... ++.    +...+++++|+|... .|++|+.||.|.|||++...
T Consensus       121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            66666544 457766643    67899999998765 443    456789999999875 56678889999999997652


Q ss_pred             ---EEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEe--e-------cCCCceEEEEEeCCCC
Q 003842          671 ---CRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHEL--S-------CNGNKFHSCVFHPTYP  736 (792)
Q Consensus       671 ---~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~--~-------~~~~~i~si~fspdg~  736 (792)
                         .+.....|...|.++.|..++ +.|.+.+.. +..+|+++.+.+...+..-  .       .....+..+....+..
T Consensus       200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~  279 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD  279 (376)
T ss_pred             chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence               233334577889999999888 245555555 9999999877532111100  0       0111222222233455


Q ss_pred             EEEEEEc-CCeEEEEECC---CCcEE----EEc-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          737 SLLVIGC-YQSLELWNMS---ENKTM----TLT-AHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       737 ~L~sgs~-dg~I~IwDl~---~~~~~----~~~-~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .+++++. .+...++-+.   ++...    .+. +|...|+++.|...+.+++|||+||.|.+|+
T Consensus       280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence            5555555 4555555433   33222    344 4778899999998899999999999999995

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.79  E-value=9.1e-18  Score=168.01  Aligned_cols=274  Identities=22%  Similarity=0.281  Sum_probs=190.0

Q ss_pred             eeeeccCCCCCCCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcC-CCCEEEEEeCC-------CeEEEEECCC---
Q 003842          475 VESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHD-------KKAVLWHTDT---  543 (792)
Q Consensus       475 v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafsp-dg~~Lasgs~D-------g~I~vWdl~t---  543 (792)
                      ..+||.--...-.+.-+...+...+...-..+.|..|.+.|+.++-+| |.++|+++..+       ..+.||.+..   
T Consensus        26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~  105 (370)
T KOG1007|consen   26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG  105 (370)
T ss_pred             ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence            334444333334445556666666655556677889999999999999 55677776542       3478998753   


Q ss_pred             ------CceeEEec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec-----ccCCCeEEEEEcCCCCe
Q 003842          544 ------LKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDD  611 (792)
Q Consensus       544 ------~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~-----~h~~~V~sl~fspd~~~  611 (792)
                            .+++..+. .+-+.|.||.|.|++..|++-. |..|.+|++.+..+.+..+.     .+....++-+|+|.   
T Consensus       106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspH---  181 (370)
T KOG1007|consen  106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPH---  181 (370)
T ss_pred             ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCC---
Confidence                  34445554 4667999999999999988876 77899999997544333222     12333444445441   


Q ss_pred             EEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-CCCCCeEEEEEcCC
Q 003842          612 LICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPS  690 (792)
Q Consensus       612 ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~-~h~~~V~sv~~spd  690 (792)
                                                          ..+.-+++..|+++..||+++.+....+. +|...|..+.|+|+
T Consensus       182 ------------------------------------Hdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpn  225 (370)
T KOG1007|consen  182 ------------------------------------HDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPN  225 (370)
T ss_pred             ------------------------------------CccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCC
Confidence                                                22333344444555555555544444433 47788999999998


Q ss_pred             CC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCC-------------
Q 003842          691 GE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSE-------------  754 (792)
Q Consensus       691 g~-~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg-~~L~sgs~dg~I~IwDl~~-------------  754 (792)
                      .. +|++|++| .|+|||.+..  ...+.++.+|...++++.|+|.. ..|++++.|..|.+|....             
T Consensus       226 kq~~lvt~gDdgyvriWD~R~t--k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~de  303 (370)
T KOG1007|consen  226 KQHILVTCGDDGYVRIWDTRKT--KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDE  303 (370)
T ss_pred             ceEEEEEcCCCccEEEEeccCC--CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccccc
Confidence            76 67778888 9999999854  36788999999999999999965 5678889999999986532             


Q ss_pred             -----------------CcEEEEcccCCCeEEEEEeC-CCCEEEEEeCCCcEEE
Q 003842          755 -----------------NKTMTLTAHEGLIAALAVST-ETGYVASASHDKFVKL  790 (792)
Q Consensus       755 -----------------~~~~~~~~h~~~V~sl~fsp-dg~~LaSgs~DG~I~I  790 (792)
                                       +.+.++..|+..|++++|+. |--+||+-+.||+|.|
T Consensus       304 se~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  304 SESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             ccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence                             11125667999999999987 4456788899999876

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=6.1e-17  Score=184.82  Aligned_cols=280  Identities=15%  Similarity=0.226  Sum_probs=208.5

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC---CCCEEEEEECC--CCCeEEEEeCCCcEEEEeCC
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH---SSLITDVRFSP--SMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h---~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWdl~  584 (792)
                      +.......+.|+|-...++++...-.|+|||.+.++....|..+   ...|+.+.+..  |..++++|+.||.|+||+-.
T Consensus      1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            44446777889998889999988889999999999988887754   46789999876  45589999999999999754


Q ss_pred             CCC----ceeEEeccc-------CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe----eEEE-EecC
Q 003842          585 NPG----YSLRTFMGH-------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----AQMR-FQPH  648 (792)
Q Consensus       585 s~~----~~i~~~~~h-------~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~~v~-~sp~  648 (792)
                      ...    +.+..+.+-       .+.=.-++|.-...+|+++| +-..|+|||.....++..+....    +.+. -...
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence            322    233333221       11113456776666677555 47899999999888877664332    2222 2234


Q ss_pred             CCEEEEEEcCCeEEEEECCCC---eEEEEecCCCCC--eEEEEEcCCCCE-EEEEeCC-eEEEEECCCCCCcceEEEeec
Q 003842          649 LGRYLAAAAENVVSILDAETQ---ACRLSLQGHTKP--IDSVCWDPSGEL-LASVSED-SVRVWTVGSGSEGECVHELSC  721 (792)
Q Consensus       649 ~~~lla~s~dg~I~i~D~~t~---~~~~~l~~h~~~--V~sv~~spdg~~-Las~s~d-~I~IwDl~s~~~~~~i~~~~~  721 (792)
                      ++.+++|..||.|++||.+..   ..+...+.|...  |..+.+-+.|-. |++++.+ .|++||++.... .....+..
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~ 1299 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLTIVA 1299 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccceeee
Confidence            688899999999999999875   356677788887  999999987764 8888888 999999998522 22222222


Q ss_pred             C---CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-------cCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          722 N---GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-------HEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       722 ~---~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~-------h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      +   ++..+++..|++.+.|++|+. +.|+||++.......+..       ..+.+.|++|+|..-+||+|+.|.+|.||
T Consensus      1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred             ccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence            2   235899999999999999988 999999998766543332       34578999999999999999999999998


Q ss_pred             C
Q 003842          792 K  792 (792)
Q Consensus       792 d  792 (792)
                      .
T Consensus      1379 s 1379 (1387)
T KOG1517|consen 1379 S 1379 (1387)
T ss_pred             e
Confidence            3

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.76  E-value=7.8e-17  Score=167.42  Aligned_cols=226  Identities=15%  Similarity=0.280  Sum_probs=180.1

Q ss_pred             EeccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCC------ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc
Q 003842          549 NLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE  621 (792)
Q Consensus       549 ~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~------~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~  621 (792)
                      .+.+|.+.|.+++|+| +...||+|+.|.+|.||.+..++      +++..+.+|...|--+.|+|...++|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4568999999999999 55689999999999999997543      4578889999999999999999999999999999


Q ss_pred             EEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC-eEEEEEcCCCCEEEEEe
Q 003842          622 IRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVS  698 (792)
Q Consensus       622 I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~-V~sv~~spdg~~Las~s  698 (792)
                      |.+||+.+++.+..++  .-+.++.|+.+|..+++++.|..|+|||.++++.+..-.+|.+. -..+.|-.+|.++.+|.
T Consensus       156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf  235 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF  235 (472)
T ss_pred             EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence            9999999999777665  34678999999999999999999999999999999988778763 33456888899666664


Q ss_pred             CC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEE--EE--cccCCCeEE
Q 003842          699 ED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTM--TL--TAHEGLIAA  769 (792)
Q Consensus       699 ~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~~~~~~--~~--~~h~~~V~s  769 (792)
                      ..    .+.+||-...++...+.++.. .+.|.---|.+|.+.|+.++ .|+.|+.|.+......  .+  .....+=..
T Consensus       236 sr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG  314 (472)
T KOG0303|consen  236 SRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRG  314 (472)
T ss_pred             ccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccc
Confidence            33    699999887776655566554 45566677888888777655 5789999999887643  22  223344455


Q ss_pred             EEEeCC
Q 003842          770 LAVSTE  775 (792)
Q Consensus       770 l~fspd  775 (792)
                      +.|-|.
T Consensus       315 ~g~mPK  320 (472)
T KOG0303|consen  315 MGFMPK  320 (472)
T ss_pred             cccccc
Confidence            555554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.75  E-value=6.6e-17  Score=162.08  Aligned_cols=238  Identities=19%  Similarity=0.363  Sum_probs=178.5

Q ss_pred             ecCCCCeEEEEEcCCCC-----EEEEEeCCCeEEEEECCCCceeEE----e-----ccCCCCEEEEEECC-CCCeEEEEe
Q 003842          509 RASTSKVICCHFSSDGK-----LLATGGHDKKAVLWHTDTLKSKTN----L-----EEHSSLITDVRFSP-SMPRLATSS  573 (792)
Q Consensus       509 ~~H~~~V~~lafspdg~-----~Lasgs~Dg~I~vWdl~t~~~~~~----l-----~~h~~~V~~i~fsp-dg~~Lasgs  573 (792)
                      ..|.-+++.+-|.|+.+     +||+++  ..++||.+...+....    +     ..+..++++..|+. +-++|.+++
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            46888999999999763     566654  4799999874322111    1     24678899999988 667999999


Q ss_pred             CCCcEEEEeCCCC--CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-eC-----CeeEEEE
Q 003842          574 FDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KG-----GTAQMRF  645 (792)
Q Consensus       574 ~Dg~V~IWdl~s~--~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~-----~~~~v~~  645 (792)
                      -|-++.|||++++  +.....+..|..+|.+|+|...+..+|++++.||.||+||++..+....+ +.     +...++|
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            9999999999983  33456778999999999999999999999999999999999987655443 32     2345677


Q ss_pred             ecCCCEEEEE-Ec-CCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCCCC---cceEE
Q 003842          646 QPHLGRYLAA-AA-ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSE---GECVH  717 (792)
Q Consensus       646 sp~~~~lla~-s~-dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spd-g~~Las~s~d-~I~IwDl~s~~~---~~~i~  717 (792)
                      ++.+-++++. .. ...|.|.|++.. .++..+.+|.+.|+.|+|.|. ...|+++++| .+.|||+.....   ..++.
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil  330 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL  330 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence            7766555543 33 468999999986 678899999999999999995 5689999999 899999975422   11222


Q ss_pred             EeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEE
Q 003842          718 ELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELW  750 (792)
Q Consensus       718 ~~~~~~~~i~si~fspdg-~~L~sgs~dg~I~Iw  750 (792)
                      .+. .+..|..+.|++.. .+|+++ .++++.|.
T Consensus       331 ay~-a~~EVNqi~Ws~~~~Dwiai~-~~kkleiL  362 (364)
T KOG0290|consen  331 AYT-AGGEVNQIQWSSSQPDWIAIC-FGKKLEIL  362 (364)
T ss_pred             hhh-ccceeeeeeecccCCCEEEEE-ecCeeeEE
Confidence            222 56789999999754 445444 44555543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.75  E-value=1.8e-16  Score=160.96  Aligned_cols=229  Identities=20%  Similarity=0.322  Sum_probs=179.4

Q ss_pred             CCeEEEEEc-------CCCCEEEEEeCCCeEEEEECCCCceeEEecc--CCC---CEEEEEECCCCCeEEEEeCCCcEEE
Q 003842          513 SKVICCHFS-------SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSS---LITDVRFSPSMPRLATSSFDKTVRV  580 (792)
Q Consensus       513 ~~V~~lafs-------pdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~--h~~---~V~~i~fspdg~~Lasgs~Dg~V~I  580 (792)
                      ..|+..+|-       |+..++|+.+.+.-|.+||.-+|+....+..  |.+   .-.+++|+|||..|++| +...|+|
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirv  183 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRV  183 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEE
Confidence            447777775       6778999999999999999999998887764  433   34689999999998876 5667999


Q ss_pred             EeCCCCCcee--EEec-----ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---eCCeeEEEEecCCC
Q 003842          581 WDADNPGYSL--RTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLG  650 (792)
Q Consensus       581 Wdl~s~~~~i--~~~~-----~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~  650 (792)
                      ||+..++...  ....     +..+.|.+++|+|....+++.++....+-||.-.....+..+   .++++.++|.++++
T Consensus       184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn  263 (406)
T KOG2919|consen  184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN  263 (406)
T ss_pred             eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC
Confidence            9996545322  2222     236789999999998889999999999999988877766654   56789999999999


Q ss_pred             EEEEEEc-CCeEEEEECCCC-eEEEEecCCCC-CeE--EEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCC
Q 003842          651 RYLAAAA-ENVVSILDAETQ-ACRLSLQGHTK-PID--SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN  724 (792)
Q Consensus       651 ~lla~s~-dg~I~i~D~~t~-~~~~~l~~h~~-~V~--sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~  724 (792)
                      ++++|+. +..|.+||++.. .++..+..|.. .-.  -....|++++|++|+.+ .|++||+....  ..+..+..+..
T Consensus       264 ~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~sd  341 (406)
T KOG2919|consen  264 KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNYSD  341 (406)
T ss_pred             eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--Ccccccccccc
Confidence            9999987 789999999875 56677776655 222  34556899999999888 99999998632  34566667778


Q ss_pred             ceEEEEEeCCCCEEEEEEcC
Q 003842          725 KFHSCVFHPTYPSLLVIGCY  744 (792)
Q Consensus       725 ~i~si~fspdg~~L~sgs~d  744 (792)
                      .+..++++|--..+++++..
T Consensus       342 ~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  342 TVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cccceecCcccceeeeccCc
Confidence            89999999997777766643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.75  E-value=3.5e-16  Score=181.44  Aligned_cols=292  Identities=19%  Similarity=0.228  Sum_probs=208.4

Q ss_pred             ceeeeeeeecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-------ceeEEeccCCCCEEEEEECCCCCeEEEE
Q 003842          501 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSMPRLATS  572 (792)
Q Consensus       501 ~~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t~-------~~~~~l~~h~~~V~~i~fspdg~~Lasg  572 (792)
                      ....+..+..|...|..++.+++. .++++|+.||+|+|||+...       +...++......+.++.+.+.+..+|++
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            345788899999999999998755 89999999999999998532       2333444467889999999999999999


Q ss_pred             eCCCcEEEEeCCCCC--c----eeEEecc--cCCCeEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeEEEee-----C
Q 003842          573 SFDKTVRVWDADNPG--Y----SLRTFMG--HSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFK-----G  638 (792)
Q Consensus       573 s~Dg~V~IWdl~s~~--~----~i~~~~~--h~~~V~sl~fspd~~-~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~  638 (792)
                      +.||.|++.+++...  +    ..+....  ....|..-+|..... .+++.+...+.|..||++.......++     +
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence            999999999997511  1    1111111  122233344443333 367788888999999999877655443     5


Q ss_pred             CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCC---CEEEEEeC-C--eEEEEECCCCC
Q 003842          639 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSG---ELLASVSE-D--SVRVWTVGSGS  711 (792)
Q Consensus       639 ~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg---~~Las~s~-d--~I~IwDl~s~~  711 (792)
                      .+++++.+|.+.+++.|+..|.+.+||++-+.++..+.. +..+|+.++.+|-.   .+.++++. .  .|.+|++.++.
T Consensus      1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence            678899999999999999999999999999888877653 55778888777632   45555554 3  89999998873


Q ss_pred             CcceEEEe----------e------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-----------------
Q 003842          712 EGECVHEL----------S------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-----------------  758 (792)
Q Consensus       712 ~~~~i~~~----------~------~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-----------------  758 (792)
                      ....+..-          .      .+.-....+++...+..+++|+.|..|+.||....+..                 
T Consensus      1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s 1356 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSES 1356 (1431)
T ss_pred             ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchh
Confidence            32222111          0      01112334556666778999999999999998542111                 


Q ss_pred             ----------------------------------------EEcccCCCeEEEEEeCC-CCEEEEEeCCCcEEEeC
Q 003842          759 ----------------------------------------TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK  792 (792)
Q Consensus       759 ----------------------------------------~~~~h~~~V~sl~fspd-g~~LaSgs~DG~I~IWd  792 (792)
                                                              .-..|...|+++++... -.+|++++.||.|+||+
T Consensus      1357 ~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1357 YDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             ccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                                                    00126667888877553 35899999999999996

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=3.7e-16  Score=158.00  Aligned_cols=255  Identities=23%  Similarity=0.343  Sum_probs=180.5

Q ss_pred             CCCCCCCCccee-ccCCcceeeeeeeecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECC---------CCceeEEec
Q 003842          484 TDPRDAGGRGMD-VSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD---------TLKSKTNLE  551 (792)
Q Consensus       484 ~~~~d~~~~~~d-~~~~~~~~~~~~l~~H~~~V~~lafsp--dg~~Lasgs~Dg~I~vWdl~---------t~~~~~~l~  551 (792)
                      +...|..+++|| ......|......+.|.+.|..+.|.+  -|..+|+++.|++|.||.-.         ......++.
T Consensus        30 tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~  109 (361)
T KOG2445|consen   30 TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLV  109 (361)
T ss_pred             eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEee
Confidence            345566777888 445577888899999999999999976  68999999999999999752         223455677


Q ss_pred             cCCCCEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCcee-----EEe-------cccCCCeEEEEEcCCC--CeEEEE
Q 003842          552 EHSSLITDVRFSPS--MPRLATSSFDKTVRVWDADNPGYSL-----RTF-------MGHSASVMSLDFHPNK--DDLICS  615 (792)
Q Consensus       552 ~h~~~V~~i~fspd--g~~Lasgs~Dg~V~IWdl~s~~~~i-----~~~-------~~h~~~V~sl~fspd~--~~ll~s  615 (792)
                      .....|++|.|.|.  |-.||+++.||.||||+.-+.....     ..+       ..+.....|+.|++..  .-+|+.
T Consensus       110 DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAv  189 (361)
T KOG2445|consen  110 DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAV  189 (361)
T ss_pred             cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEE
Confidence            78899999999994  6689999999999999987633211     111       1345566677776542  224545


Q ss_pred             EeCC-----CcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 003842          616 CDGD-----GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS  690 (792)
Q Consensus       616 gs~D-----g~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd  690 (792)
                      |+.+     +.++||.....                                   .+....+.++.+|..+|+.|+|.|+
T Consensus       190 gs~e~a~~~~~~~Iye~~e~-----------------------------------~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  190 GSDEDAPHLNKVKIYEYNEN-----------------------------------GRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             EcccCCccccceEEEEecCC-----------------------------------cceeeeehhcCCCCCcceeeeeccc
Confidence            4433     23333332211                                   0112344566789999999999995


Q ss_pred             ----CCEEEEEeCCeEEEEECCCCC-----------------CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003842          691 ----GELLASVSEDSVRVWTVGSGS-----------------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL  749 (792)
Q Consensus       691 ----g~~Las~s~d~I~IwDl~s~~-----------------~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~I  749 (792)
                          -.+||+++.|.|+||.++...                 ..+.+..+..|.+.+..+.|.-.|..|++.+.||.|++
T Consensus       235 ~Gr~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRL  314 (361)
T KOG2445|consen  235 IGRSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRL  314 (361)
T ss_pred             cCCceeeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeee
Confidence                247888888889999987311                 23456678889999999999999999999999999999


Q ss_pred             EECCC---CcEEEEcccCCCeEEEEEe
Q 003842          750 WNMSE---NKTMTLTAHEGLIAALAVS  773 (792)
Q Consensus       750 wDl~~---~~~~~~~~h~~~V~sl~fs  773 (792)
                      |...-   .++......++.|....|+
T Consensus       315 Wkany~n~~kC~sv~~~e~~~~~~~~~  341 (361)
T KOG2445|consen  315 WKANYNNLWKCTSVLKAEGSVTKPDFS  341 (361)
T ss_pred             hhhhhhhhheeeeEEeccCCCCCcccc
Confidence            97543   2344444444445444443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.75  E-value=6.1e-17  Score=164.87  Aligned_cols=240  Identities=20%  Similarity=0.339  Sum_probs=180.6

Q ss_pred             cCCCCeEEEEEcCCC----CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCC
Q 003842          510 ASTSKVICCHFSSDG----KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       510 ~H~~~V~~lafspdg----~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg-~~Lasgs~Dg~V~IWdl~  584 (792)
                      .|....+.++|+-|-    -+||+|+.-|.|+|.|+.++.+...+.+|...|+.|.|.|+. .+|++++.|..|++|++.
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            356667778887643    389999999999999999999999999999999999999965 589999999999999999


Q ss_pred             CCCceeEEe---cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee------------------------
Q 003842          585 NPGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------------------------  637 (792)
Q Consensus       585 s~~~~i~~~---~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~------------------------  637 (792)
                      + ..++..|   .+|.+.|.+++|+.++. .|++|+.|..|++|++...+....++                        
T Consensus       167 ~-~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f  244 (385)
T KOG1034|consen  167 T-DVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF  244 (385)
T ss_pred             C-CeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence            8 6666665   47999999999999988 56699999999999998443211110                        


Q ss_pred             -------CCeeEEEEecCCCEEEEEEcCCeEEEEEC-CCC-------------eEEEEecCCCCCeEEE--EEcCCCCEE
Q 003842          638 -------GGTAQMRFQPHLGRYLAAAAENVVSILDA-ETQ-------------ACRLSLQGHTKPIDSV--CWDPSGELL  694 (792)
Q Consensus       638 -------~~~~~v~~sp~~~~lla~s~dg~I~i~D~-~t~-------------~~~~~l~~h~~~V~sv--~~spdg~~L  694 (792)
                             ..+.|++|  -++++++-+.++.|..|.. +-.             ..+.++.-....|+-|  +|++-.+.|
T Consensus       245 st~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l  322 (385)
T KOG1034|consen  245 STTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML  322 (385)
T ss_pred             cccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence                   00111112  1367788888999999987 111             1222333333444444  556678899


Q ss_pred             EEEeCC-eEEEEECCCCCCcceE-EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003842          695 ASVSED-SVRVWTVGSGSEGECV-HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       695 as~s~d-~I~IwDl~s~~~~~~i-~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~  753 (792)
                      |.|... .|++||++..+...+. .........|...+|+.|+..|+..+.|++|.-||..
T Consensus       323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            999888 9999999876553222 2222345568999999999999999999999999853

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.75  E-value=4.3e-16  Score=176.71  Aligned_cols=257  Identities=17%  Similarity=0.275  Sum_probs=186.4

Q ss_pred             CeEEEEECCCCceeEEeccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCce-----eEEecccCCCeEEEEEcC
Q 003842          534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFHP  607 (792)
Q Consensus       534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~~~-----i~~~~~h~~~V~sl~fsp  607 (792)
                      +.+.||+++........-.....|+|++|+| +..+||.|+++|.|.+||++.....     -.....|..+|+.+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            4799999987643333334667899999999 5668888999999999999975542     122346889999999976


Q ss_pred             CCCe-EEEEEeCCCcEEEEEcCCCeeE-E-----E---------eeCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCC-
Q 003842          608 NKDD-LICSCDGDGEIRYWSINNGSCT-R-----V---------FKGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQ-  669 (792)
Q Consensus       608 d~~~-ll~sgs~Dg~I~iwdl~~~~~~-~-----~---------~~~~~~~v~~sp~~-~~lla~s~dg~I~i~D~~t~-  669 (792)
                      +... =|++++.||.|+.|+++..... .     .         -...+..+.|.+.. ..+++|+.+|.|..-+.... 
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            5333 2458888999999998754331 0     0         11245667887765 46788888998887443322 


Q ss_pred             -------eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE-EEE
Q 003842          670 -------ACRLSLQGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS-LLV  740 (792)
Q Consensus       670 -------~~~~~l~~h~~~V~sv~~spdg~-~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~-L~s  740 (792)
                             +....+..|.++|+++.++|-+. +|.++++.+|+||.-..  ...++..+..+...+++++|||.... |++
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~--~~~Pl~~~~~~~~~v~~vaWSptrpavF~~  459 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV--IASPLLSLDSSPDYVTDVAWSPTRPAVFAT  459 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC--CCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence                   12335566899999999999766 44455533999999762  22566666677777999999998765 555


Q ss_pred             EEcCCeEEEEECCCCcEE---EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          741 IGCYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       741 gs~dg~I~IwDl~~~~~~---~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +..+|.|.|||+......   ....+....+.+.|+++|++|++|...|.|+||+
T Consensus       460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK  514 (555)
T ss_pred             EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence            666899999999654432   3444466777888899999999999999999985

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.74  E-value=1.6e-16  Score=173.48  Aligned_cols=268  Identities=15%  Similarity=0.228  Sum_probs=199.5

Q ss_pred             CcceEEEEeCCCeeeecCCC--eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          429 SKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       429 ~k~~l~~s~Dg~~~~ss~s~--~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...-++|-|||.-++.+..+  .|||+.+|.+                                              +.
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~l----------------------------------------------lq   47 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTL----------------------------------------------LQ   47 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCccc----------------------------------------------cc
Confidence            44568999999988776666  4477766543                                              35


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      ++++|.+.|+|++|+.||+++|+|+.|+.|.||+-.-...++  ..|.+.|.|+.|+|-...|++++-.. .-+|..+. 
T Consensus        48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~q-  123 (1081)
T KOG1538|consen   48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQ-  123 (1081)
T ss_pred             ccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--eccCCeeeEeecCchHHHhhhcchhh-ccccChhh-
Confidence            688999999999999999999999999999999854322221  25999999999999998999987654 67898775 


Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-----eCCeeEEEEecCCC-----EEEEEE
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQMRFQPHLG-----RYLAAA  656 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~~~~v~~sp~~~-----~lla~s  656 (792)
                       +.+...+ ....|.+++|..||. +++.|-.||+|.+-+-...+.++.-     ..++..++|+|..+     .+.+..
T Consensus       124 -K~V~K~k-ss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D  200 (1081)
T KOG1538|consen  124 -KSVSKHK-SSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD  200 (1081)
T ss_pred             -hhHHhhh-hheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe
Confidence             2222221 345688999999976 5668889999999876554444433     24577899998754     345555


Q ss_pred             cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003842          657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY  735 (792)
Q Consensus       657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg  735 (792)
                      ...++.+|.+.. +.+..-+.-.-.-.|+.+.++|+|++.|+.| .+.+|.-+    ...+.++...+.+|+++...|++
T Consensus       201 W~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~----GvrLGTvg~~D~WIWtV~~~PNs  275 (1081)
T KOG1538|consen  201 WGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD----GVRLGTVGEQDSWIWTVQAKPNS  275 (1081)
T ss_pred             ccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec----CeEEeeccccceeEEEEEEccCC
Confidence            566777766643 3332222233345789999999999999988 78888642    25666666678899999999999


Q ss_pred             CEEEEEEcCCeEEEEECCC
Q 003842          736 PSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       736 ~~L~sgs~dg~I~IwDl~~  754 (792)
                      .++++|+.||+|..|++-.
T Consensus       276 Q~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  276 QYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             ceEEEEEccCeeehhhhHH
Confidence            9999999999999998743

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=2e-17  Score=179.04  Aligned_cols=245  Identities=21%  Similarity=0.285  Sum_probs=178.6

Q ss_pred             eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC-------CCceeEEecccCCCeEEEEEcCCCCeEEEEEeC
Q 003842          546 SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG  618 (792)
Q Consensus       546 ~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s-------~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~  618 (792)
                      ...++..|...|+.+.|.+....|++++.||+|.+|++..       .-+.+.+|.+|.++|.|+++.+++..+ ++|+-
T Consensus       286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~-ysgg~  364 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHC-YSGGI  364 (577)
T ss_pred             eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEE-Eeecc
Confidence            3447778999999999999999999999999999999932       125678999999999999999987654 59999


Q ss_pred             CCcEEEEEcCCCe----------eEEEe---eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC--CCCCeE
Q 003842          619 DGEIRYWSINNGS----------CTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--HTKPID  683 (792)
Q Consensus       619 Dg~I~iwdl~~~~----------~~~~~---~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~--h~~~V~  683 (792)
                      ||+|+.|++....          ....+   .+.+..++++.....|+.++.||+|++|+.....+ .+|..  ..+.-.
T Consensus       365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            9999999664211          11122   33455678999999999999999999999877655 33332  122233


Q ss_pred             EEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEee----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 003842          684 SVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELS----CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT  757 (792)
Q Consensus       684 sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~----~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~  757 (792)
                      ++.+-...-.+..++..  .--++++........+....    .....+..+.++|...+.+++..|+.|+++|..++++
T Consensus       444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~  523 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI  523 (577)
T ss_pred             eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence            45443322112222211  22223332221111111111    1124577889999999999999999999999999998


Q ss_pred             E-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          758 M-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       758 ~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      + ...+|...|+++++.|+|-+|++++.||.|++|+
T Consensus       524 l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k  559 (577)
T KOG0642|consen  524 LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK  559 (577)
T ss_pred             chheeeccceecceeecCCCceEEeecCCceeehhh
Confidence            8 7889999999999999999999999999999995

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=1e-16  Score=166.60  Aligned_cols=200  Identities=19%  Similarity=0.315  Sum_probs=160.3

Q ss_pred             eeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------ceeEEeccCCCCEEEEEECCC-CCeEEEEeCCC
Q 003842          506 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPS-MPRLATSSFDK  576 (792)
Q Consensus       506 ~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~-------~~~~~l~~h~~~V~~i~fspd-g~~Lasgs~Dg  576 (792)
                      -.+.||+++|..++|+| +...||+|+.|.+|.||.+...       +.+..|.+|...|--|.|+|. .+.|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            34679999999999999 5678999999999999998532       557788999999999999995 45899999999


Q ss_pred             cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC----eeEEEEecCCCEE
Q 003842          577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRY  652 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~sp~~~~l  652 (792)
                      +|.|||+.+ ++.+.++. |...|++++|+.+|. ++++.+.|..|||||.++++.+..-..+    ...+.|..++. +
T Consensus       155 ~v~iWnv~t-geali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i  230 (472)
T KOG0303|consen  155 TVSIWNVGT-GEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I  230 (472)
T ss_pred             eEEEEeccC-CceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence            999999998 55566666 999999999999986 6679999999999999999988765332    34467777777 5


Q ss_pred             EEEEc----CCeEEEEECCCCeE---EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC
Q 003842          653 LAAAA----ENVVSILDAETQAC---RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG  710 (792)
Q Consensus       653 la~s~----dg~I~i~D~~t~~~---~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~  710 (792)
                      ++.+.    +..+.+||.++...   ..++. ....|.---|++|..+|+.++.+  .|+.|.+...
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence            55443    67899999876532   23333 33456666688999988877765  8999999764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=3.4e-15  Score=154.68  Aligned_cols=231  Identities=17%  Similarity=0.295  Sum_probs=173.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC--CcEEEEeCCCCCce
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYS  589 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D--g~V~IWdl~s~~~~  589 (792)
                      ...+..+.|+.|...|..|+.|| .++|+.+..............|..+-|+..  ++|..+.+  ..++++++.. +..
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk-~~~   80 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKK-KTT   80 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEccc-Cce
Confidence            45678888999999999999887 577877765553333344455666677654  55555544  3488999886 444


Q ss_pred             eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC----eeEEEEecCC--CEEEEEEc--CCeE
Q 003842          590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHL--GRYLAAAA--ENVV  661 (792)
Q Consensus       590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~sp~~--~~lla~s~--dg~I  661 (792)
                      +..+. ....|.++.++.+  +++ ++- ...|+|||+++.+.+.++...    ...++++++.  .+++.-+.  .|.|
T Consensus        81 ICe~~-fpt~IL~VrmNr~--RLv-V~L-ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV  155 (391)
T KOG2110|consen   81 ICEIF-FPTSILAVRMNRK--RLV-VCL-EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV  155 (391)
T ss_pred             EEEEe-cCCceEEEEEccc--eEE-EEE-cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence            44433 4567999999854  444 444 344999999999998876532    2345565554  36655433  6899


Q ss_pred             EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecC--CCceEEEEEeCCCCE
Q 003842          662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPS  737 (792)
Q Consensus       662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~--~~~i~si~fspdg~~  737 (792)
                      .+||+.+.+.+..+..|++.+-+++|+++|.+||++++.  .||||.+.++   ..+.++.-.  ...|.+++|++++.+
T Consensus       156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~  232 (391)
T KOG2110|consen  156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF  232 (391)
T ss_pred             EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence            999999999999999999999999999999999999988  7999999887   555555433  345899999999999


Q ss_pred             EEEEEcCCeEEEEECCC
Q 003842          738 LLVIGCYQSLELWNMSE  754 (792)
Q Consensus       738 L~sgs~dg~I~IwDl~~  754 (792)
                      |++.+..++|+||.+++
T Consensus       233 L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  233 LAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEEecCCCeEEEEEecc
Confidence            99999999999998864

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.73  E-value=1.2e-16  Score=171.02  Aligned_cols=259  Identities=17%  Similarity=0.281  Sum_probs=190.7

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEE-CC-------CCCeEEEEeCCCcEEEE
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-SP-------SMPRLATSSFDKTVRVW  581 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~f-sp-------dg~~Lasgs~Dg~V~IW  581 (792)
                      .|...|.|+.|+.....+.+++ |..+.+|...+......+.-....|....+ -+       ....|+.++.||.+.|.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            4666778999998887776665 555555543333323222222222222211 11       23478999999999888


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee---EEEeeCCeeEEEEecCCCEEEEEEcC
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGGTAQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~---~~~~~~~~~~v~~sp~~~~lla~s~d  658 (792)
                      +-.  ++.-+.+..|.+.|.+-.|+|+|.-++ ++++||.|++|.-. |..   +..+...+.|++|.|+.+.++.+. .
T Consensus        91 ~k~--~rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g  165 (737)
T KOG1524|consen   91 NKS--ARVERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-G  165 (737)
T ss_pred             ccc--chhhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEec-C
Confidence            764  566677889999999999999998776 88999999999854 322   233567889999999988877654 4


Q ss_pred             CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003842          659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~  737 (792)
                      +.+.|-.+.....+..++.|.+-|.++.|++..++|++|++| ..+|||--.    ..+..-..|+.+|++++|.|+ +.
T Consensus       166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~~  240 (737)
T KOG1524|consen  166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-KD  240 (737)
T ss_pred             CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-cc
Confidence            667777777777778889999999999999999999999999 999999642    566667778999999999999 44


Q ss_pred             EEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003842          738 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL  790 (792)
Q Consensus       738 L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I  790 (792)
                      +++++ .+++++          .....+.|..++|++||..+++|+..|.|.+
T Consensus       241 ~~v~S-~nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  241 YLLWS-YNTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeeee-eeeeee----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            44444 344442          2234577999999999999999998887753

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.72  E-value=5.5e-16  Score=155.38  Aligned_cols=214  Identities=21%  Similarity=0.340  Sum_probs=166.2

Q ss_pred             ceeeeeeee-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eEEec-----cCCCCEEEEEECC--CCCeEEE
Q 003842          501 SFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLE-----EHSSLITDVRFSP--SMPRLAT  571 (792)
Q Consensus       501 ~~~~~~~l~-~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~-~~~l~-----~h~~~V~~i~fsp--dg~~Las  571 (792)
                      +++.+..+. .+-+.|.|+.|.|++..||+-. |..|.+|+++.... +..+.     ++....++-+|+|  +++.+++
T Consensus       111 tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t  189 (370)
T KOG1007|consen  111 TLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT  189 (370)
T ss_pred             hhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence            356666666 6778999999999999998876 88999999987665 33332     3567788899999  6666666


Q ss_pred             EeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCE
Q 003842          572 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR  651 (792)
Q Consensus       572 gs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~  651 (792)
                      . .|+++..||+++..+....-..|...|..+.|+|+..++|++|+.||.|+|||++.-                     
T Consensus       190 t-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t---------------------  247 (370)
T KOG1007|consen  190 T-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT---------------------  247 (370)
T ss_pred             e-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC---------------------
Confidence            5 578899999998666666666899999999999999999999999999999998753                     


Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCC------------------
Q 003842          652 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGS------------------  711 (792)
Q Consensus       652 lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~------------------  711 (792)
                                       ..++..+.+|..+|++|.|+|.. .+|++++.| .|.+|...+-.                  
T Consensus       248 -----------------k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~d  310 (370)
T KOG1007|consen  248 -----------------KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDED  310 (370)
T ss_pred             -----------------CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchh
Confidence                             34566777899999999999854 477778888 88888653221                  


Q ss_pred             ---C-----cceEEEeecCCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCC
Q 003842          712 ---E-----GECVHELSCNGNKFHSCVFHPTYPSL-LVIGCYQSLELWNMSE  754 (792)
Q Consensus       712 ---~-----~~~i~~~~~~~~~i~si~fspdg~~L-~sgs~dg~I~IwDl~~  754 (792)
                         .     ...+.++..|...|++++|+.-.+++ ++.+.||.+.|=.+..
T Consensus       311 seer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  311 SEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             hHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence               0     12234677789999999999877765 5568899988876653

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.7e-15  Score=171.82  Aligned_cols=279  Identities=17%  Similarity=0.280  Sum_probs=208.3

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t----~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      .|...++|.++||+++++|+|..||.|.||.--.    ......+.-|...|++++|+++|.+|++|+..|.+.+|.+++
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            5777799999999999999999999999996422    233456778999999999999999999999999999999998


Q ss_pred             CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--------------CCeeEEEEecCCCE
Q 003842          586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------------GGTAQMRFQPHLGR  651 (792)
Q Consensus       586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--------------~~~~~v~~sp~~~~  651 (792)
                      ++  ...+..-.+.|..+.++||++.+. .+..|..|.+....+......+.              +-...++++|..+.
T Consensus       283 ~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~  359 (792)
T KOG1963|consen  283 GK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS  359 (792)
T ss_pred             CC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence            54  455566788999999999987554 56669999998876544333221              22345788998888


Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEecC-----C------CCCeEEEEEcCCCCEEEEEe---------CC--eEEEEECCC
Q 003842          652 YLAAAAENVVSILDAETQACRLSLQG-----H------TKPIDSVCWDPSGELLASVS---------ED--SVRVWTVGS  709 (792)
Q Consensus       652 lla~s~dg~I~i~D~~t~~~~~~l~~-----h------~~~V~sv~~spdg~~Las~s---------~d--~I~IwDl~s  709 (792)
                      ++..+..+.|.+||+.+.+.++.+..     +      ...++.++.+..|.++++.-         ++  .+++|-...
T Consensus       360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~  439 (792)
T KOG1963|consen  360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP  439 (792)
T ss_pred             eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence            99999999999999988766655431     2      22477788888899998863         11  688998765


Q ss_pred             CCCcceE--EEeecCCCceEEEEEeC-CCC-EEEEEEcCCeEEEEECCCCc----------EE-EEcccCCCeEEEEEeC
Q 003842          710 GSEGECV--HELSCNGNKFHSCVFHP-TYP-SLLVIGCYQSLELWNMSENK----------TM-TLTAHEGLIAALAVST  774 (792)
Q Consensus       710 ~~~~~~i--~~~~~~~~~i~si~fsp-dg~-~L~sgs~dg~I~IwDl~~~~----------~~-~~~~h~~~V~sl~fsp  774 (792)
                      ....-.+  .....|+..+...++.+ ... .+++++.||.++||-+...+          +. .-..|..++++++|+.
T Consensus       440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~  519 (792)
T KOG1963|consen  440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ  519 (792)
T ss_pred             CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence            4332222  22335666555555543 333 78999999999999883321          11 1124788999999999


Q ss_pred             CCCEEEEEeCCCcEEEeC
Q 003842          775 ETGYVASASHDKFVKLWK  792 (792)
Q Consensus       775 dg~~LaSgs~DG~I~IWd  792 (792)
                      ||..|+ ++.|++|.|||
T Consensus       520 dGslla-~s~~~~Itiwd  536 (792)
T KOG1963|consen  520 DGSLLA-VSFDDTITIWD  536 (792)
T ss_pred             CCcEEE-EecCCEEEEec
Confidence            996655 66899999997

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.2e-15  Score=149.57  Aligned_cols=227  Identities=19%  Similarity=0.261  Sum_probs=170.9

Q ss_pred             CEEEEEECCCCCeEEEEeCCCcEEEEeCCC---------CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 003842          556 LITDVRFSPSMPRLATSSFDKTVRVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS  626 (792)
Q Consensus       556 ~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s---------~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwd  626 (792)
                      .|..-+|+|.+++|++|+.+|.|.|+.+.+         +...+..+.+|.++|+.++|+.   .++++|+ ||.|+-|.
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEee
Confidence            455668999999999999999999998863         2345666789999999999993   3454665 69999998


Q ss_pred             cCCCee----EEEe------------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 003842          627 INNGSC----TRVF------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS  690 (792)
Q Consensus       627 l~~~~~----~~~~------------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd  690 (792)
                      .+....    .+.+            -..++.+.+.|..+.++.++.|+.++.||+++++...++++|++.|.++.--..
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            765432    1100            124677888999999999999999999999999999999999999999988555


Q ss_pred             CCEEEEEeCC-eEEEEECCCCCCcceEEEeec-------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc
Q 003842          691 GELLASVSED-SVRVWTVGSGSEGECVHELSC-------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA  762 (792)
Q Consensus       691 g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~-------~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~  762 (792)
                      ..-+++|++| +++|||.++.+....+..++.       .+..|-+++.  +..++++|+ ...+.+|.++..++.....
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe
Confidence            5567789988 999999998854444433221       1223444444  445666554 4589999999999988888


Q ss_pred             cCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          763 HEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       763 h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ....|..+.|..|  .+++++..+.|.-|
T Consensus       245 ipa~v~~v~F~~d--~vl~~G~g~~v~~~  271 (325)
T KOG0649|consen  245 IPARVHLVDFVDD--CVLIGGEGNHVQSY  271 (325)
T ss_pred             cccceeEeeeecc--eEEEeccccceeee
Confidence            8888999999654  56677766555544

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=4.5e-16  Score=159.52  Aligned_cols=247  Identities=16%  Similarity=0.220  Sum_probs=176.9

Q ss_pred             eeeecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceeEEe--ccCC-CCEEEEEECCCCCeEEEEe----CCC
Q 003842          506 NSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTNL--EEHS-SLITDVRFSPSMPRLATSS----FDK  576 (792)
Q Consensus       506 ~~l~~H~~~V~~lafsp--dg~~Lasgs~Dg~I~vWdl~t~~~~~~l--~~h~-~~V~~i~fspdg~~Lasgs----~Dg  576 (792)
                      ..+++|...+..+.|..  ....+.+|+.||+|++||+........+  ..+. .+..|++...++..+++|.    .|-
T Consensus        64 ~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A  143 (376)
T KOG1188|consen   64 EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDA  143 (376)
T ss_pred             heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCce
Confidence            44667777777888876  4568999999999999999876655444  3454 5677777777787888885    367


Q ss_pred             cEEEEeCCCCCceeEE-ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----EEEee--CCeeEEEEecCC
Q 003842          577 TVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFK--GGTAQMRFQPHL  649 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~~-~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~--~~~~~v~~sp~~  649 (792)
                      .|.+||++.....++. +..|...|++|+|+|.+.++|++|+.||.|.+||++....    +.++.  ..+..+.|..++
T Consensus       144 ~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  144 SVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK  223 (376)
T ss_pred             EEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence            8999999986664544 4579999999999999999999999999999999986532    22222  346677887665


Q ss_pred             -CEEEEEEcCCeEEEEECCCCeEEEEecCCC------------CCeEEEEEcC-CCCEEEEEeCC--eEEEEEC---CCC
Q 003842          650 -GRYLAAAAENVVSILDAETQACRLSLQGHT------------KPIDSVCWDP-SGELLASVSED--SVRVWTV---GSG  710 (792)
Q Consensus       650 -~~lla~s~dg~I~i~D~~t~~~~~~l~~h~------------~~V~sv~~sp-dg~~Las~s~d--~I~IwDl---~s~  710 (792)
                       +++.+.+..+...+|+++.+.+...+....            ..+... .+| ++..++.++.+  ...++-+   .++
T Consensus       224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~  302 (376)
T KOG1188|consen  224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSG  302 (376)
T ss_pred             cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccc
Confidence             578889999999999999887555443210            111111 223 34455554443  4444433   344


Q ss_pred             CCcceEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003842          711 SEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       711 ~~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~  753 (792)
                      .....+..+.+ |...|+++.|.-.+..+++|+.||.+.+|...
T Consensus       303 ~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  303 SLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             cccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence            44445555555 55668889999999999999999999999863

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.71  E-value=8.3e-16  Score=174.41  Aligned_cols=261  Identities=19%  Similarity=0.260  Sum_probs=195.1

Q ss_pred             CcceeccCCcceeeeeeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce--eEE----eccCCCCEEEEEEC
Q 003842          491 GRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS--KTN----LEEHSSLITDVRFS  563 (792)
Q Consensus       491 ~~~~d~~~~~~~~~~~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~--~~~----l~~h~~~V~~i~fs  563 (792)
                      .-+|++......+   ..-.....|+|++|+| +..+||.|+.+|.|.+||+..+..  ...    ...|...|+.+.|.
T Consensus       224 ~~vW~~~~p~~Pe---~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  224 LLVWSLKNPNTPE---LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             EEEEecCCCCCce---EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            4456665552222   2223467899999999 667889999999999999987655  222    23689999999998


Q ss_pred             CCCC--eEEEEeCCCcEEEEeCCCCCceeEE-----ec------ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC--
Q 003842          564 PSMP--RLATSSFDKTVRVWDADNPGYSLRT-----FM------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--  628 (792)
Q Consensus       564 pdg~--~Lasgs~Dg~V~IWdl~s~~~~i~~-----~~------~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~--  628 (792)
                      .+..  -|++++.||.|..|+++.-..+...     ..      .....+++++|.+...+.|+.|+++|.|..-+-.  
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            7544  4999999999999998753221111     11      2234689999999988999999999999873332  


Q ss_pred             -CCe-e----E---EEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEecCCCCCeEEEEEcCCCC-EEEEE
Q 003842          629 -NGS-C----T---RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQGHTKPIDSVCWDPSGE-LLASV  697 (792)
Q Consensus       629 -~~~-~----~---~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~-t~~~~~~l~~h~~~V~sv~~spdg~-~Las~  697 (792)
                       ... .    .   ..+.+.+..+.++|-+..++..+.|.+|+||... ...++..+..+...|++++|+|..- .|+++
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~  460 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV  460 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence             222 0    1   1123567788999999888888889999999998 7788888888888899999999765 55556


Q ss_pred             eCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003842          698 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN  755 (792)
Q Consensus       698 s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~  755 (792)
                      ..+ .|.|||+..... .++.....+......+.|++.|+.|++|...|.+++|++...
T Consensus       461 d~~G~l~iWDLl~~~~-~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  461 DGDGNLDIWDLLQDDE-EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             cCCCceehhhhhcccc-CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            656 999999976433 444444444666778888999999999999999999999653

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=5e-15  Score=145.31  Aligned_cols=266  Identities=16%  Similarity=0.222  Sum_probs=189.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCC---------C-ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDT---------L-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t---------~-~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      .|.+-+|+|.+++|++|..+|.|.++.+++         + ..+....+|.++|+.++|..  .+|++|+ ||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence            477788999999999999999999998753         2 23445578999999999983  3566665 599999988


Q ss_pred             CCCCce-----eEEe-------cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCee---EEEEecC
Q 003842          584 DNPGYS-----LRTF-------MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---QMRFQPH  648 (792)
Q Consensus       584 ~s~~~~-----i~~~-------~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---~v~~sp~  648 (792)
                      +...+.     +...       ...-..|+++.+.|..+.+|.+| .|+.++.||+++|+..+.++++..   ++.....
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            652221     0000       11224688999999887777555 799999999999999999988754   4555566


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEEEEecCC----------CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEE
Q 003842          649 LGRYLAAAAENVVSILDAETQACRLSLQGH----------TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHE  718 (792)
Q Consensus       649 ~~~lla~s~dg~I~i~D~~t~~~~~~l~~h----------~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~  718 (792)
                      .+.+++|+.||++++||.++.+++..+..-          ..+|.+++  -+..+|++|+.-.+.+|.+++.+. .++..
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrsse~-t~vfp  244 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSES-TCVFP  244 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCCCc-eEEEe
Confidence            788999999999999999999988877532          23455555  456788877766999999988632 33333


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCC-CCEEEEEeCCCcEEEe
Q 003842          719 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE-TGYVASASHDKFVKLW  791 (792)
Q Consensus       719 ~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspd-g~~LaSgs~DG~I~IW  791 (792)
                      +   ...+..+.|..|  .+++++..+.|.-|.+..--..........+++..|+.. -++|-.++..+.+.|+
T Consensus       245 i---pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  245 I---PARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             c---ccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            3   346677777554  577788778899998865444444444444555555432 3455566677777765

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=3.8e-15  Score=153.52  Aligned_cols=276  Identities=15%  Similarity=0.248  Sum_probs=192.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCce
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYS  589 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspd-g~~Lasgs~Dg~V~IWdl~s~~~~  589 (792)
                      +-.+..++|++.-..+|++..|-.|++||-.. ++...++ .....|+|++|-|. ++.|++|+..| |.||..+.....
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~  175 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA  175 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence            34578899999877889999999999999776 5555554 34567999999995 45788888777 999988753221


Q ss_pred             -------------eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---eCCeeEEEEecCCCEEE
Q 003842          590 -------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYL  653 (792)
Q Consensus       590 -------------i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll  653 (792)
                                   +....+| ..|+++.|.+||..++-+.-.|..|+|||..++.++...   -+++.-+.|+|++.+++
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf  254 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF  254 (445)
T ss_pred             ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence                         1222344 689999999999877766667899999999999877654   24567799999999999


Q ss_pred             EEEcCCeEEEEECCC-CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCc------------ceEEEee
Q 003842          654 AAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG------------ECVHELS  720 (792)
Q Consensus       654 a~s~dg~I~i~D~~t-~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~------------~~i~~~~  720 (792)
                      ++..|+..++|.... ........ ..+.|...+|+|+|++|+....+.-++|.+....+.            ..+..+.
T Consensus       255 aAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~  333 (445)
T KOG2139|consen  255 AATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ  333 (445)
T ss_pred             Eecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence            999999999995544 33333333 345899999999999887776664445554322110            0111111


Q ss_pred             -----c----CCCceEEEEEeCCCCEEEEEEcCC--------eEEEEECCCCcEEEEc--c--cCCCeEEEEEeC---CC
Q 003842          721 -----C----NGNKFHSCVFHPTYPSLLVIGCYQ--------SLELWNMSENKTMTLT--A--HEGLIAALAVST---ET  776 (792)
Q Consensus       721 -----~----~~~~i~si~fspdg~~L~sgs~dg--------~I~IwDl~~~~~~~~~--~--h~~~V~sl~fsp---dg  776 (792)
                           .    ..+.+.+++|.|.|.++++.-..+        .|.+||....-.+.+.  +  .......++|+|   ++
T Consensus       334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g  413 (445)
T KOG2139|consen  334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG  413 (445)
T ss_pred             hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence                 1    146788999999999999986654        4677887766555332  1  111244556654   56


Q ss_pred             CEEEEEeCCCcEEEe
Q 003842          777 GYVASASHDKFVKLW  791 (792)
Q Consensus       777 ~~LaSgs~DG~I~IW  791 (792)
                      .+|..|=..|.|.-|
T Consensus       414 ~lLsiaWsTGriq~y  428 (445)
T KOG2139|consen  414 RLLSIAWSTGRIQRY  428 (445)
T ss_pred             cEEEEEeccCceEee
Confidence            666666667777654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=2.2e-15  Score=170.88  Aligned_cols=230  Identities=17%  Similarity=0.180  Sum_probs=163.2

Q ss_pred             CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCc-eeEEecccCCCeEEEEEcCC
Q 003842          533 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPN  608 (792)
Q Consensus       533 Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D---g~V~IWdl~s~~~-~i~~~~~h~~~V~sl~fspd  608 (792)
                      +..|+|||.+... ...+..|...|.+++|+|||+.|++++.+   ..|++||+.++.. .+..+.+   ...+++|+||
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCC
Confidence            4689999987554 56677788899999999999999888754   3699999986332 2333333   3447899999


Q ss_pred             CCeEEEEEeCCCcEEEE--EcCCCeeEEEee--CCeeEEEEecCCCEEEEEEc-CCeEEEEECCC--CeEEEEecCCCCC
Q 003842          609 KDDLICSCDGDGEIRYW--SINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAET--QACRLSLQGHTKP  681 (792)
Q Consensus       609 ~~~ll~sgs~Dg~I~iw--dl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t--~~~~~~l~~h~~~  681 (792)
                      ++.++++.+.+|.+.||  |+.++.......  .......|+|++..+++++. ++...||+++.  +.. ..+ .+.. 
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~-  335 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG-  335 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC-
Confidence            99888777778875555  666665444322  23567899999998877664 67777776543  322 222 3333 


Q ss_pred             eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC---CCCcEE
Q 003842          682 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM---SENKTM  758 (792)
Q Consensus       682 V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl---~~~~~~  758 (792)
                       .++.|+|||++|++.+.+.+.+||+.++..   .. +... .....+.|+|+|++|++++.++.+.+|++   ......
T Consensus       336 -~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~---~~-lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~  409 (429)
T PRK01742        336 -YSAQISADGKTLVMINGDNVVKQDLTSGST---EV-LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA  409 (429)
T ss_pred             -CCccCCCCCCEEEEEcCCCEEEEECCCCCe---EE-ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence             467899999999988878777899987632   11 1111 12356789999999999999987776654   344445


Q ss_pred             EEcccCCCeEEEEEeCC
Q 003842          759 TLTAHEGLIAALAVSTE  775 (792)
Q Consensus       759 ~~~~h~~~V~sl~fspd  775 (792)
                      .+..|.+.+..++|+|-
T Consensus       410 ~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        410 RLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EccCCCCCCCCcccCCC
Confidence            67788888999999984

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=3.7e-15  Score=154.24  Aligned_cols=282  Identities=15%  Similarity=0.216  Sum_probs=213.6

Q ss_pred             CcceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003842          429 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA  505 (792)
Q Consensus       429 ~k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~  505 (792)
                      ....+-||.+|.++++++.+   ++|++......+.                                        .+++
T Consensus        58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~----------------------------------------~KPI   97 (609)
T KOG4227|consen   58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT----------------------------------------PKPI   97 (609)
T ss_pred             ccceeeeccCCeEEeecCCcceeeeechHHHHhhcC----------------------------------------CCCc
Confidence            35578999999999998888   7898764322110                                        0122


Q ss_pred             eee-ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc--CCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          506 NSV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       506 ~~l-~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~--h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      ... ..|...|.|++|....++|++|+.+++|.+.|+++...+..+..  ..+.|+.+..+|..+.|++.+.+|.|.+||
T Consensus        98 ~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D  177 (609)
T KOG4227|consen   98 GVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFID  177 (609)
T ss_pred             eeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEe
Confidence            222 35668999999999999999999999999999999887777653  346899999999999999999999999999


Q ss_pred             CCCCCceeE--EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-------EEeeCC---eeEEEEecCCC
Q 003842          583 ADNPGYSLR--TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-------RVFKGG---TAQMRFQPHLG  650 (792)
Q Consensus       583 l~s~~~~i~--~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~-------~~~~~~---~~~v~~sp~~~  650 (792)
                      ++.....+.  ...........+.|+|....||++.+..+-+-+||++.....       +.+...   -..+.|++.+.
T Consensus       178 ~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~  257 (609)
T KOG4227|consen  178 NRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN  257 (609)
T ss_pred             ccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCC
Confidence            986442322  233345667889999999999999999999999999864321       111111   24578999999


Q ss_pred             EEEEEEcCCeEEEEECCCCeE-EEEecCCC-------CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC---------
Q 003842          651 RYLAAAAENVVSILDAETQAC-RLSLQGHT-------KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE---------  712 (792)
Q Consensus       651 ~lla~s~dg~I~i~D~~t~~~-~~~l~~h~-------~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~---------  712 (792)
                      .+++.-....-.+||+-+.++ ++.+. |.       ..+.+++|..|-. +++|+++ .|++|.+.....         
T Consensus       258 Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~  335 (609)
T KOG4227|consen  258 QFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGH  335 (609)
T ss_pred             eehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCc
Confidence            999888777778888877543 44443 32       2466788865544 8899999 999999853211         


Q ss_pred             -----------cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003842          713 -----------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM  752 (792)
Q Consensus       713 -----------~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl  752 (792)
                                 .+.+..+.+|...+..+.|++...+|++.+-.+.++||.-
T Consensus       336 ~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  336 DEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             chhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence                       1234567889999999999999999999999999999964

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.69  E-value=4.2e-15  Score=151.31  Aligned_cols=225  Identities=16%  Similarity=0.256  Sum_probs=173.9

Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t---~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      .++.-..+|+|.+|++|+..+|++.....|.||....   .+...++..|...|++|+|+|..+.|++|+.|..-+||..
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            3444567899999999999999999999999998764   4577889999999999999999999999999999999999


Q ss_pred             CCCC--ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-------eEEEeeCCeeEEEEecCCCEEEE
Q 003842          584 DNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-------CTRVFKGGTAQMRFQPHLGRYLA  654 (792)
Q Consensus       584 ~s~~--~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-------~~~~~~~~~~~v~~sp~~~~lla  654 (792)
                      .+++  ++...+..+...+++|.|+|.++ .|++|+....|.||-++...       ..+.++..+.++.|+|++-.+++
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence            5433  34455667889999999999965 67799989999888776543       22334567889999999999999


Q ss_pred             EEcCCeEEEEECC-----C-------------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 003842          655 AAAENVVSILDAE-----T-------------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC  715 (792)
Q Consensus       655 ~s~dg~I~i~D~~-----t-------------~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~  715 (792)
                      |+.|+..+||..-     .             +..+.++....+.|..+.|+|+|..|+-.+.| .+.+-|.....+  .
T Consensus       164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~  241 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--R  241 (361)
T ss_pred             cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--h
Confidence            9999999888542     1             12223333456789999999999999999999 899888765432  2


Q ss_pred             EEEeecCCCceEEEEEeCC
Q 003842          716 VHELSCNGNKFHSCVFHPT  734 (792)
Q Consensus       716 i~~~~~~~~~i~si~fspd  734 (792)
                      +.......-+..++.|-.+
T Consensus       242 v~~~~~~~lP~ls~~~ise  260 (361)
T KOG1523|consen  242 VQSVATAQLPLLSVSWISE  260 (361)
T ss_pred             ccchhhccCCceeeEeecC
Confidence            2222223345556655443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.69  E-value=5.7e-15  Score=148.33  Aligned_cols=273  Identities=16%  Similarity=0.256  Sum_probs=198.8

Q ss_pred             CCeEEEEEcC---CCCEEEEEeC----CCeEEEEECC--CCceeEEe-ccCCCCEEEEEECCCCC-----eEEEEeCCCc
Q 003842          513 SKVICCHFSS---DGKLLATGGH----DKKAVLWHTD--TLKSKTNL-EEHSSLITDVRFSPSMP-----RLATSSFDKT  577 (792)
Q Consensus       513 ~~V~~lafsp---dg~~Lasgs~----Dg~I~vWdl~--t~~~~~~l-~~h~~~V~~i~fspdg~-----~Lasgs~Dg~  577 (792)
                      -.++++.|+.   ...+||.|+.    .++|.|..++  +++.+..- -.|..+++.+.|.|+..     +||+++  ..
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~  122 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF  122 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence            3578888884   2347888873    4566666543  44444332 26889999999999763     445443  35


Q ss_pred             EEEEeCCCCCceeE--------EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee--EE----EeeCCeeEE
Q 003842          578 VRVWDADNPGYSLR--------TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--TR----VFKGGTAQM  643 (792)
Q Consensus       578 V~IWdl~s~~~~i~--------~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~--~~----~~~~~~~~v  643 (792)
                      +|+|.+..+...+.        +-..+..+++++.|+.-..++|.+++-|-++.|||++++..  ++    .+...+..+
T Consensus       123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI  202 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI  202 (364)
T ss_pred             EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence            99999984222111        12246688999999998899999999999999999998732  22    235678889


Q ss_pred             EEecCCC-EEEEEEcCCeEEEEECCCCeEEEEe---cCCCCCeEEEEEcC-CCCEEEEEeCC--eEEEEECCCCCCcceE
Q 003842          644 RFQPHLG-RYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDP-SGELLASVSED--SVRVWTVGSGSEGECV  716 (792)
Q Consensus       644 ~~sp~~~-~lla~s~dg~I~i~D~~t~~~~~~l---~~h~~~V~sv~~sp-dg~~Las~s~d--~I~IwDl~s~~~~~~i  716 (792)
                      +|...+. .+++++.||.|++||++..+.-..+   .....+...++|++ |-+|+|+-..|  .|.|.|++..  ...+
T Consensus       203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P--~tpv  280 (364)
T KOG0290|consen  203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP--CTPV  280 (364)
T ss_pred             EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC--Ccce
Confidence            9998664 4666788999999999987543332   22245788899988 55788888877  8999999864  3678


Q ss_pred             EEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcE------EEEcccCCCeEEEEEeC-CCCEEEEEeCCCcE
Q 003842          717 HELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKT------MTLTAHEGLIAALAVST-ETGYVASASHDKFV  788 (792)
Q Consensus       717 ~~~~~~~~~i~si~fspdg-~~L~sgs~dg~I~IwDl~~~~~------~~~~~h~~~V~sl~fsp-dg~~LaSgs~DG~I  788 (792)
                      .++..|...|..++|.|.. .+|++++.|..+.|||+..--.      +....-.+.|+.+.|++ ...+|+.|. ++++
T Consensus       281 a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-~kkl  359 (364)
T KOG0290|consen  281 ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-GKKL  359 (364)
T ss_pred             ehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-cCee
Confidence            8999999999999999965 6788999999999999965322      22334677899999995 556787765 4444


Q ss_pred             EE
Q 003842          789 KL  790 (792)
Q Consensus       789 ~I  790 (792)
                      .|
T Consensus       360 ei  361 (364)
T KOG0290|consen  360 EI  361 (364)
T ss_pred             eE
Confidence            43

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=2e-14  Score=149.04  Aligned_cols=230  Identities=13%  Similarity=0.152  Sum_probs=172.7

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCe
Q 003842          554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGS  631 (792)
Q Consensus       554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D--g~I~iwdl~~~~  631 (792)
                      ...+..+.|+.+...|..|+.|| .++|..+.-.+. .........|..+-|+..   |++..+.+  ..+++++++.+.
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~-~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC-FSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh-hcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence            34577778999999999999999 788888763332 122223345666667643   55555444  348999999888


Q ss_pred             eEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC---CCCCeEEEEEcCCCCEEEEEeC-C--eEEEE
Q 003842          632 CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSE-D--SVRVW  705 (792)
Q Consensus       632 ~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~---h~~~V~sv~~spdg~~Las~s~-d--~I~Iw  705 (792)
                      .+..+.-+...+++--+.++++++-.+. |+|||+++.+++.++..   +...+.++++++.+.||+.-+. +  .|.||
T Consensus        80 ~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen   80 TICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF  158 (391)
T ss_pred             eEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence            7766554444444444445677666655 99999999999988765   3445666666667778887543 2  89999


Q ss_pred             ECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEcc--cCCCeEEEEEeCCCCEEEE
Q 003842          706 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTA--HEGLIAALAVSTETGYVAS  781 (792)
Q Consensus       706 Dl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~~~~--h~~~V~sl~fspdg~~LaS  781 (792)
                      |+.+-   ..+..+..|.+.+.+++|+++|.+||+++..| .|+||.+.++..+ .++.  ....|.+++|++|+.+|++
T Consensus       159 d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~  235 (391)
T KOG2110|consen  159 DTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA  235 (391)
T ss_pred             Ecccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence            99765   77888889999999999999999999999999 5899999999877 3432  2456889999999999999


Q ss_pred             EeCCCcEEEeC
Q 003842          782 ASHDKFVKLWK  792 (792)
Q Consensus       782 gs~DG~I~IWd  792 (792)
                      .|+.++|+||+
T Consensus       236 sS~TeTVHiFK  246 (391)
T KOG2110|consen  236 SSNTETVHIFK  246 (391)
T ss_pred             ecCCCeEEEEE
Confidence            99999999985

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.67  E-value=1.1e-13  Score=152.75  Aligned_cols=264  Identities=12%  Similarity=0.117  Sum_probs=175.7

Q ss_pred             EE-EEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEE
Q 003842          526 LL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD  604 (792)
Q Consensus       526 ~L-asgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~  604 (792)
                      ++ ++-..++.|.|.|.++.+.+.++......-..+.|++|++++++++.||.|.+||+.+ .+.+.++.... ...+++
T Consensus         7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~G~-~~~~i~   84 (369)
T PF02239_consen    7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKVGG-NPRGIA   84 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE-SS-EEEEEE
T ss_pred             EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEecCC-CcceEE
Confidence            44 4555789999999999999999987655445678999999999999999999999998 56777776444 467899


Q ss_pred             EcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC----------CeeEEEEecCCCEEEEEEcC-CeEEEEECCCCeEE-
Q 003842          605 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----------GTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACR-  672 (792)
Q Consensus       605 fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----------~~~~v~~sp~~~~lla~s~d-g~I~i~D~~t~~~~-  672 (792)
                      +++||+++++++..++.+.++|.++.+.++.+..          .+..+..++....+++.-.| +.|.+.|....+.+ 
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~  164 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK  164 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred             EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence            9999999998888999999999999998887643          23456667787767666664 89999998765432 


Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCC--------------------------------------
Q 003842          673 LSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE--------------------------------------  712 (792)
Q Consensus       673 ~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~--------------------------------------  712 (792)
                      ..............|+|+++|++++...  .|.++|..+++.                                      
T Consensus       165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~  244 (369)
T PF02239_consen  165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP  244 (369)
T ss_dssp             EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred             eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence            2333345567789999999988776433  777777665411                                      


Q ss_pred             --------------cceEEEeecCCCceEEEEEeCCCCEEEEE---E-cCCeEEEEECCCCcEEEEcc--cCCCeEEEEE
Q 003842          713 --------------GECVHELSCNGNKFHSCVFHPTYPSLLVI---G-CYQSLELWNMSENKTMTLTA--HEGLIAALAV  772 (792)
Q Consensus       713 --------------~~~i~~~~~~~~~i~si~fspdg~~L~sg---s-~dg~I~IwDl~~~~~~~~~~--h~~~V~sl~f  772 (792)
                                    ++.+..+...+.. ..+..+|+++++++.   + ..+.|.|+|..+.+.+....  -...+..+.|
T Consensus       245 ~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef  323 (369)
T PF02239_consen  245 LIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEF  323 (369)
T ss_dssp             EEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE
T ss_pred             cccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEE
Confidence                          1111122222222 456679999999998   3 34799999999997764332  2235999999


Q ss_pred             eCCCCEEEEEeCC--CcEEEeC
Q 003842          773 STETGYVASASHD--KFVKLWK  792 (792)
Q Consensus       773 spdg~~LaSgs~D--G~I~IWd  792 (792)
                      ++||+++..+..|  |.|.|||
T Consensus       324 ~~dG~~v~vS~~~~~~~i~v~D  345 (369)
T PF02239_consen  324 NPDGKEVWVSVWDGNGAIVVYD  345 (369)
T ss_dssp             -TTSSEEEEEEE--TTEEEEEE
T ss_pred             CCCCCEEEEEEecCCCEEEEEE
Confidence            9999977665554  3699886

...

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=3.6e-15  Score=169.17  Aligned_cols=225  Identities=15%  Similarity=0.178  Sum_probs=159.3

Q ss_pred             eeeeecCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe-CCCcEEE
Q 003842          505 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRV  580 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafspdg~~Lasgs~D---g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs-~Dg~V~I  580 (792)
                      ...+..|...|.+.+|+|||+.||.++.+   ..|++||+.+++.... ....+...+++|+|||+.|++++ .+|.+.|
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~I  274 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNI  274 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEE
Confidence            34567788899999999999999988754   3699999988754322 22222344789999999888764 6887666


Q ss_pred             EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeEEEeeCCeeEEEEecCCCEEEEEEcCC
Q 003842          581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGGTAQMRFQPHLGRYLAAAAEN  659 (792)
Q Consensus       581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~~~~~~v~~sp~~~~lla~s~dg  659 (792)
                      |.++.....+..+..+...+.++.|+||+..+++++..+|.+.||++... .....+........|+|+++.+++++.++
T Consensus       275 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~~~  354 (429)
T PRK01742        275 YVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMINGDN  354 (429)
T ss_pred             EEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcCCC
Confidence            64432233456666777788899999999988878777888888887532 22222222224577999999998887755


Q ss_pred             eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 003842          660 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT  734 (792)
Q Consensus       660 ~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspd  734 (792)
                       +.+||+.+++.......+  ...++.|+|||++|++++.+ .+.+|++... ....+..+..+...+..++|+|-
T Consensus       355 -i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        355 -VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             -EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCceEEccCCCCCCCCcccCCC
Confidence             556999988765433222  34568899999999998877 6777765321 12566777777777888999885

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.67  E-value=1.7e-16  Score=167.96  Aligned_cols=263  Identities=17%  Similarity=0.278  Sum_probs=209.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR  591 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~  591 (792)
                      ....+.+.|+.+|++|+.|+..|.|..+|+.++.....+.. ...|.++.|..+..+||++- ...++|||-.  +..+.
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~--GtElH  204 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN--GTELH  204 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCC--CcEEe
Confidence            34567899999999999999999999999999998887763 45689999998887777764 5569999876  56666


Q ss_pred             EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003842          592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAET  668 (792)
Q Consensus       592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t  668 (792)
                      .+..| ..|..+.|.|. .+||++++..|.++.-|+.+|+.+..+.   +....++-+|.+..+-+|...|+|.+|....
T Consensus       205 Clk~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s  282 (545)
T KOG1272|consen  205 CLKRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS  282 (545)
T ss_pred             ehhhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence            66654 46889999998 5788899999999999999999887664   4566688899988899999999999999999


Q ss_pred             CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003842          669 QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL  747 (792)
Q Consensus       669 ~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I  747 (792)
                      .+++..+..|.++|.+|+++++|.|+++.+.| .|+|||++...   .+.++.. ......++||..|  +++++....|
T Consensus       283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v  356 (545)
T KOG1272|consen  283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY---QLHTYRT-PHPASNLSLSQKG--LLALSYGDHV  356 (545)
T ss_pred             cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---ccceeec-CCCcccccccccc--ceeeecCCee
Confidence            99999999999999999999999999999999 99999998764   3333333 3456677777766  5556666689


Q ss_pred             EEEE-CCCCc---EEEEcc--cCCCeEEEEEeCCCCEEEEEeCCC
Q 003842          748 ELWN-MSENK---TMTLTA--HEGLIAALAVSTETGYVASASHDK  786 (792)
Q Consensus       748 ~IwD-l~~~~---~~~~~~--h~~~V~sl~fspdg~~LaSgs~DG  786 (792)
                      .||. .-.+.   ...+..  ..+.|..+.|.|-...|..|-..|
T Consensus       357 ~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  357 QIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             eeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence            9993 33311   112222  345899999999777776665444

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=6.5e-16  Score=165.96  Aligned_cols=207  Identities=21%  Similarity=0.354  Sum_probs=160.4

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECC--CCCeEEEEeCCCcEEE
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSP--SMPRLATSSFDKTVRV  580 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fsp--dg~~Lasgs~Dg~V~I  580 (792)
                      .-..|.||.+.|.|++|+.||.+|++|+.|-.|.|||.-..+.+..+. +|...|.++.|.|  +.+.+++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            445688999999999999999999999999999999998888887775 8999999999999  5668999999999999


Q ss_pred             EeCCC---------CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-E---------e---eC
Q 003842          581 WDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-V---------F---KG  638 (792)
Q Consensus       581 Wdl~s---------~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~-~---------~---~~  638 (792)
                      ||+..         .......+..|...|..|+..|++.+.|.++++||+|+-+|++....-. .         +   -.
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            99985         2244566778999999999999999999999999999999998743211 1         1   12


Q ss_pred             CeeEEEEecCCCE-EEEEEcCCeEEEEECCCC--------e----------EEEEec-CCC-----------CCeEEEEE
Q 003842          639 GTAQMRFQPHLGR-YLAAAAENVVSILDAETQ--------A----------CRLSLQ-GHT-----------KPIDSVCW  687 (792)
Q Consensus       639 ~~~~v~~sp~~~~-lla~s~dg~I~i~D~~t~--------~----------~~~~l~-~h~-----------~~V~sv~~  687 (792)
                      ...++.++|...+ |++|+.|-..++||.+..        .          ++..+. +|.           ..++.+.|
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf  281 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF  281 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence            3567888887765 556677889999994321        1          122221 122           11456789


Q ss_pred             cCCCCEE-EEEeCCeEEEEECCCC
Q 003842          688 DPSGELL-ASVSEDSVRVWTVGSG  710 (792)
Q Consensus       688 spdg~~L-as~s~d~I~IwDl~s~  710 (792)
                      +|+|.-| ++-+.+.|++||+..+
T Consensus       282 npNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  282 NPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             CCCCcEEEEeeCCeEEEEEeecCC
Confidence            9999754 4445559999999765

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.66  E-value=5e-14  Score=143.55  Aligned_cols=269  Identities=14%  Similarity=0.204  Sum_probs=197.8

Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCcee
Q 003842          513 SKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSL  590 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasg-s~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s~~~~i  590 (792)
                      +.|.-+.|..|..+++++ ..|+.|.+|++...+-...+......+..++|+|||+ .|.+...|-.|.||.+.+..  .
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~  126 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--G  126 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--e
Confidence            447778888887766654 5678999999999888889999999999999999996 56677889999999998732  2


Q ss_pred             EEecccCCCeEEEEEcCCCCeEEEEEeC-----------------------------------CCcEEEEEcCCCeeEEE
Q 003842          591 RTFMGHSASVMSLDFHPNKDDLICSCDG-----------------------------------DGEIRYWSINNGSCTRV  635 (792)
Q Consensus       591 ~~~~~h~~~V~sl~fspd~~~ll~sgs~-----------------------------------Dg~I~iwdl~~~~~~~~  635 (792)
                      ..+.-.+..+..++|++||.+..+..-.                                   +..+.+||.--.-.+..
T Consensus       127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a  206 (447)
T KOG4497|consen  127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA  206 (447)
T ss_pred             EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence            3333344556889999998754432222                                   22344555332222222


Q ss_pred             ee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE---------------------------------------
Q 003842          636 FK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS---------------------------------------  674 (792)
Q Consensus       636 ~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~---------------------------------------  674 (792)
                      ++  .++..+.|+|.+..+++|+.|+.++|.+--+.+....                                       
T Consensus       207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a  286 (447)
T KOG4497|consen  207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA  286 (447)
T ss_pred             eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence            22  4677799999999999999999888764322211110                                       


Q ss_pred             ---------------------ec------CCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEeecCCC
Q 003842          675 ---------------------LQ------GHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGN  724 (792)
Q Consensus       675 ---------------------l~------~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~~~~~~i~~~~~~~~  724 (792)
                                           ++      ...-.+.-++|++|..|+++-.+.   .+-+||+...    .+..+-....
T Consensus       287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk~  362 (447)
T KOG4497|consen  287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQKH  362 (447)
T ss_pred             CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhcc
Confidence                                 00      001225568999999999998877   6899999764    2333334567


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCc
Q 003842          725 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF  787 (792)
Q Consensus       725 ~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~  787 (792)
                      +|....|+|....|+++.....+++|......++......-.|..+.|.-+|..++.++.|..
T Consensus       363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence            899999999999999999888999999998888877777788999999999999999998864

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.65  E-value=3e-14  Score=153.35  Aligned_cols=242  Identities=15%  Similarity=0.196  Sum_probs=163.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee----EEeccCCCCEEEEEE-----CCCCCeEEEEeCCCcEEEEeCC
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK----TNLEEHSSLITDVRF-----SPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~----~~l~~h~~~V~~i~f-----spdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      .++...++-.|++|+..- ...+++|++..+..+    ....-.....+|=+|     .+++--|+.|-.-|.|.++|..
T Consensus       125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~  203 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI  203 (636)
T ss_pred             ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence            345555566667766553 346888887643211    111111122333344     3455578888888889998876


Q ss_pred             CCCceeEEec----ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCee--EEEEecCCCEEEEEEcC
Q 003842          585 NPGYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA--QMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       585 s~~~~i~~~~----~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~--~v~~sp~~~~lla~s~d  658 (792)
                      . ....+.+.    -.+..|+||.|-|.++.+|+++-.+|.+++||.+.       .....  +....+++..+......
T Consensus       204 ~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k  275 (636)
T KOG2394|consen  204 N-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK  275 (636)
T ss_pred             h-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence            5 22111111    13478999999999999999999999999998721       11111  11122233333222111


Q ss_pred             CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003842          659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~  737 (792)
                            ...+..++..+.-..+.|..++|+|||++||+.+.| .++|||+.+.   +.+..++.-.+...||+|+|||+|
T Consensus       276 ------sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy  346 (636)
T KOG2394|consen  276 ------SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY  346 (636)
T ss_pred             ------ccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence                  111223444444455689999999999999999999 9999999765   555555556678999999999999


Q ss_pred             EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 003842          738 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS  773 (792)
Q Consensus       738 L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fs  773 (792)
                      |++|+.|.-|.||.+.+.+++ .-.+|+.+|+.|+|+
T Consensus       347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            999999999999999999988 567999999999998

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=7.4e-14  Score=158.21  Aligned_cols=232  Identities=14%  Similarity=0.148  Sum_probs=168.1

Q ss_pred             CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC---CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCC
Q 003842          534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD  610 (792)
Q Consensus       534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~---Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~  610 (792)
                      ..|.+||.+.... ..+..+...+.+.+|+|||+.|+..+.   +..|++||+.+ +. ...+....+.+..+.|+|||+
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~-~~~l~~~~~~~~~~~~SPDG~  255 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GA-VRQVASFPRHNGAPAFSPDGS  255 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CC-eEEccCCCCCcCCeEECCCCC
Confidence            4789999875543 445556778999999999998887643   35699999976 32 223333344456789999999


Q ss_pred             eEEEEEeCCC--cEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCeE
Q 003842          611 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPID  683 (792)
Q Consensus       611 ~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~d-g--~I~i~D~~t~~~~~~l~~h~~~V~  683 (792)
                      .++++.+.+|  .|++||+.+++.......  ......|+|+++.|+.++.+ +  .|+++|+.++... .+..+...+.
T Consensus       256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~  334 (429)
T PRK03629        256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ  334 (429)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence            8887766666  489999998876655433  45678999999999887764 3  5666687776543 3333444566


Q ss_pred             EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 003842          684 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK  756 (792)
Q Consensus       684 sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---~I~IwDl~~~~  756 (792)
                      +.+|+|||++|+..+.+    .|++||+.++..    ..+.. ........|+|||++|+.++.++   .++++++....
T Consensus       335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~----~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~  409 (429)
T PRK03629        335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF  409 (429)
T ss_pred             CEEECCCCCEEEEEEccCCCceEEEEECCCCCe----EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence            78999999998876543    588999977632    22221 12234678999999999998876   47888997777


Q ss_pred             EEEEcccCCCeEEEEEeC
Q 003842          757 TMTLTAHEGLIAALAVST  774 (792)
Q Consensus       757 ~~~~~~h~~~V~sl~fsp  774 (792)
                      ...+..|.+.+...+|+|
T Consensus       410 ~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        410 KARLPATDGQVKFPAWSP  427 (429)
T ss_pred             eEECccCCCCcCCcccCC
Confidence            777888889999999987

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=8.5e-14  Score=158.26  Aligned_cols=280  Identities=22%  Similarity=0.259  Sum_probs=198.5

Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC---eEEEEeCCCcEEEEeCC
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP---RLATSSFDKTVRVWDAD  584 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~---~Lasgs~Dg~V~IWdl~  584 (792)
                      +.+.+..-..-.||+|+++++... +..|.||.+.++.++..+++|...++.+.+.|...   ++++++.||.|++||..
T Consensus        12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~   90 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS   90 (792)
T ss_pred             eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence            334444444556999999888876 56899999999999999999999999999988544   67899999999999998


Q ss_pred             CCCceeEEecccCCCeEEEEEcC---CCCeEEEEEeCCC------------cEEEEEcCCCeeEE-Ee-eCC--eeEEEE
Q 003842          585 NPGYSLRTFMGHSASVMSLDFHP---NKDDLICSCDGDG------------EIRYWSINNGSCTR-VF-KGG--TAQMRF  645 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V~sl~fsp---d~~~ll~sgs~Dg------------~I~iwdl~~~~~~~-~~-~~~--~~~v~~  645 (792)
                      . +..++++..+ ..|..+.+.|   +....++.+..|.            .++-+.+.+....+ .+ +..  ..++.+
T Consensus        91 ~-~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~  168 (792)
T KOG1963|consen   91 D-GELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVD  168 (792)
T ss_pred             C-cEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEE
Confidence            7 6667766643 3344443322   1111111222221            11111111111000 00 111  244555


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCeEEE----EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC-CCCcceEEEe
Q 003842          646 QPHLGRYLAAAAENVVSILDAETQACRL----SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS-GSEGECVHEL  719 (792)
Q Consensus       646 sp~~~~lla~s~dg~I~i~D~~t~~~~~----~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s-~~~~~~i~~~  719 (792)
                      ++. +.+.....+..+++|+..+.....    .-..|...++|++++|++++++++..| .|.+|.--. .........+
T Consensus       169 ~~~-ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l  247 (792)
T KOG1963|consen  169 NNS-GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL  247 (792)
T ss_pred             cCC-ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEE
Confidence            555 455555566677888877754111    112367779999999999999999988 999996543 2333455667


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          720 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       720 ~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      .-|...|.+++|+++|.+|++||.++.+.+|.+.+++...+..-.++|..+.++||+.+.+....|+.|.+-
T Consensus       248 HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li  319 (792)
T KOG1963|consen  248 HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI  319 (792)
T ss_pred             EecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence            778899999999999999999999999999999999977777888999999999999999999999998764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=1.8e-13  Score=148.72  Aligned_cols=268  Identities=17%  Similarity=0.283  Sum_probs=189.1

Q ss_pred             CeEEEEEcCCCCEEEEEe-----C-----CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          514 KVICCHFSSDGKLLATGG-----H-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs-----~-----Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      .++++.|+|.|++|.+--     .     .-.+.+|+++++.....+......-+++.|+.|..+. +=-..+.|.+|++
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~-arlv~nev~f~~~  153 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLA-ARLVSNEVQFYDL  153 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhh-hhhhcceEEEEec
Confidence            799999999999998621     1     2457899999966555555433333789999887543 2233456999999


Q ss_pred             CCCCceeEEecccCCCeEEEEEcCCCC-eEEEE-----EeCCCcEEEEEcCCCee------EEEeeCCeeEEEEecCCCE
Q 003842          584 DNPGYSLRTFMGHSASVMSLDFHPNKD-DLICS-----CDGDGEIRYWSINNGSC------TRVFKGGTAQMRFQPHLGR  651 (792)
Q Consensus       584 ~s~~~~i~~~~~h~~~V~sl~fspd~~-~ll~s-----gs~Dg~I~iwdl~~~~~------~~~~~~~~~~v~~sp~~~~  651 (792)
                      .+.......+  |...|+.+.++|... ..+|+     .+.-+.|+||.+.....      ...|+.....+.|+..+.-
T Consensus       154 ~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~  231 (566)
T KOG2315|consen  154 GSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA  231 (566)
T ss_pred             CCccceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence            8744333333  567899999998743 33332     24456799998873322      1234556667888888776


Q ss_pred             EEEEEc------------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceE
Q 003842          652 YLAAAA------------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECV  716 (792)
Q Consensus       652 lla~s~------------dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~~~~~~i  716 (792)
                      |++...            +..++++++....++..+. ..++|.+++|+++++-++++..-   .+.|||++-      .
T Consensus       232 LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~------~  304 (566)
T KOG2315|consen  232 LLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG------K  304 (566)
T ss_pred             EEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC------C
Confidence            544322            2378888888556665555 57899999999999877665543   899999853      3


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC------CCc
Q 003842          717 HELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKF  787 (792)
Q Consensus       717 ~~~~~~~~~i~si~fspdg~~L~sgs~d---g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~------DG~  787 (792)
                      -.+....++-.++-|+|.|++|+.+|-+   |.|.|||+.+.+++.-..-. .-+-+.|+|||.+|+|+..      |+.
T Consensus       305 ~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg  383 (566)
T KOG2315|consen  305 PVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNG  383 (566)
T ss_pred             EeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC-CceEEEEcCCCcEEEEEeccccEEecCC
Confidence            3344456778899999999999998876   69999999997777433322 2455789999999998874      788


Q ss_pred             EEEeC
Q 003842          788 VKLWK  792 (792)
Q Consensus       788 I~IWd  792 (792)
                      ++||+
T Consensus       384 ~Kiwh  388 (566)
T KOG2315|consen  384 IKIWH  388 (566)
T ss_pred             eEEEE
Confidence            99995

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=9.1e-13  Score=134.49  Aligned_cols=229  Identities=17%  Similarity=0.261  Sum_probs=163.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC--EEEEEECCCCCeEEE-EeCC------CcEEEEeCC
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL--ITDVRFSPSMPRLAT-SSFD------KTVRVWDAD  584 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~--V~~i~fspdg~~Las-gs~D------g~V~IWdl~  584 (792)
                      ....++|+-|...+++|..+| .+||+++..+.......+.+.  +..+-|  ..++|+. |+.+      ..|.|||-.
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence            355699999999999997665 899999875554433333332  223333  2334443 3333      469999944


Q ss_pred             CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeEEEeeC---CeeEEEEecCCCE-EEE--EEc
Q 003842          585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKG---GTAQMRFQPHLGR-YLA--AAA  657 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~-~~~~~~~~~~---~~~~v~~sp~~~~-lla--~s~  657 (792)
                      . ..++.++. ...+|.+|.+.++  +++++  .++.|++|... ..+.++.++.   +..-+++.|..+. +++  |..
T Consensus        84 k-~~~i~el~-f~~~I~~V~l~r~--riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k  157 (346)
T KOG2111|consen   84 K-ERCIIELS-FNSEIKAVKLRRD--RIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK  157 (346)
T ss_pred             c-CcEEEEEE-eccceeeEEEcCC--eEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence            3 56666655 6788999999876  34433  38899999987 4455555432   3334445554443 333  223


Q ss_pred             CCeEEEEECCCCeE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecC--CCceEEEEE
Q 003842          658 ENVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVF  731 (792)
Q Consensus       658 dg~I~i~D~~t~~~--~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~--~~~i~si~f  731 (792)
                      -|.|.|.|+...+.  ...+.+|...|.|++.+-+|.+||+++..  -|+|||..++   ..+.++.-.  ...|.+++|
T Consensus       158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaF  234 (346)
T KOG2111|consen  158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAF  234 (346)
T ss_pred             cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEe
Confidence            68999999987765  47788999999999999999999999987  7999999988   555555432  345999999


Q ss_pred             eCCCCEEEEEEcCCeEEEEECCC
Q 003842          732 HPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       732 spdg~~L~sgs~dg~I~IwDl~~  754 (792)
                      +|+..+|++++..|+|+||.++.
T Consensus       235 Sp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  235 SPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             CCCccEEEEEcCCCeEEEEEeec
Confidence            99999999999999999998865

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=8.1e-14  Score=151.06  Aligned_cols=275  Identities=14%  Similarity=0.164  Sum_probs=204.6

Q ss_pred             cCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc
Q 003842          510 ASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY  588 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~L-asgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~  588 (792)
                      +|...-+.|..+|||+|+ |+|.+.-.|++||+........-.-....|.-+-++.|-..++.-..|.+|-+.....  .
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G--~  126 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--R  126 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC--e
Confidence            466677889999999975 5677888999999998776655444556677777777777788888888887765432  1


Q ss_pred             eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003842          589 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD  665 (792)
Q Consensus       589 ~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D  665 (792)
                      -..+-  ....-.+++++.-.-.++ .++....|+-++++.|..+..|.   +.++++..++..+.|++|+.+|.|.+||
T Consensus       127 hy~~R--IP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD  203 (703)
T KOG2321|consen  127 HYRTR--IPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD  203 (703)
T ss_pred             eeeee--cCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence            11111  122334666665544555 44456789999999999887765   5678889999999999999999999999


Q ss_pred             CCCCeEEEEecC------CCC-----CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC
Q 003842          666 AETQACRLSLQG------HTK-----PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP  733 (792)
Q Consensus       666 ~~t~~~~~~l~~------h~~-----~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp  733 (792)
                      .++...+.++..      |.+     .|+++.|+.+|-.+++|+.. .|.|||+++...  .+..-.....+|..+.|.+
T Consensus       204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~  281 (703)
T KOG2321|consen  204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQD  281 (703)
T ss_pred             chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccc
Confidence            998766555432      333     39999999999999999988 999999997632  2233334456788899977


Q ss_pred             CCC-EEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          734 TYP-SLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       734 dg~-~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      .+. ..++......++|||-.+++.+........++.+|+-|++.++++|.+++.+..|
T Consensus       282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence            532 2333344468999999999999888778889999999999999999988776543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=2.4e-13  Score=154.63  Aligned_cols=232  Identities=16%  Similarity=0.227  Sum_probs=167.5

Q ss_pred             CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC---CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCC
Q 003842          534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD  610 (792)
Q Consensus       534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~---Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~  610 (792)
                      ..|++||.+. .....+..|...+.+.+|+|||+.|+..+.   +..|++||+.++ . ...+..+.+.+.+.+|+|||+
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g-~-~~~l~~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG-Q-RELVGNFPGMTFAPRFSPDGR  258 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC-c-EEEeecCCCcccCcEECCCCC
Confidence            4788999854 455667778889999999999999888764   467999999863 3 244555667788999999999


Q ss_pred             eEEEEEeCCCc--EEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEc-C--CeEEEEECCCCeEEEEecCCCCCeE
Q 003842          611 DLICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPID  683 (792)
Q Consensus       611 ~ll~sgs~Dg~--I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~-d--g~I~i~D~~t~~~~~~l~~h~~~V~  683 (792)
                      .++++.+.++.  |++||+.++........  ......|+|++.+++.++. +  ..|++||+.++.... +..+...+.
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~  337 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS  337 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence            88888877765  77889988776554332  2456899999999887775 3  368899987765543 333345567


Q ss_pred             EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC------CeEEEEECC
Q 003842          684 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY------QSLELWNMS  753 (792)
Q Consensus       684 sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d------g~I~IwDl~  753 (792)
                      ...|+|||++|+..+.+    .|.+||+..+.    ...+.. ...+..+.|+|||++|+..+.+      ..|+++|+.
T Consensus       338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~  412 (435)
T PRK05137        338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT  412 (435)
T ss_pred             CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence            78999999999876543    68888875432    222222 2346778999999998876653      268888988


Q ss_pred             CCcEEEEcccCCCeEEEEEeCC
Q 003842          754 ENKTMTLTAHEGLIAALAVSTE  775 (792)
Q Consensus       754 ~~~~~~~~~h~~~V~sl~fspd  775 (792)
                      ++....+. ..+.+...+|+|-
T Consensus       413 g~~~~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        413 GRNEREVP-TPGDASDPAWSPL  433 (435)
T ss_pred             CCceEEcc-CCCCccCcccCCC
Confidence            77665444 3555777888763

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=7.9e-15  Score=154.56  Aligned_cols=191  Identities=23%  Similarity=0.272  Sum_probs=152.3

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec-
Q 003842          516 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-  594 (792)
Q Consensus       516 ~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~-  594 (792)
                      .+++|+.||..|++|+.||++|||++.....+.....|...|.++.|+||+++|++-+.| ..+||+++++ ..+.... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhcCC
Confidence            789999999999999999999999999988888888999999999999999999999999 8999999984 4443333 


Q ss_pred             -ccCCCeEEEEEcCCC---Ce-EEEEEeCCCcEEEEEcCCCee---E---EEe--eCCeeEEEEecCCCEEEEEEcCCeE
Q 003842          595 -GHSASVMSLDFHPNK---DD-LICSCDGDGEIRYWSINNGSC---T---RVF--KGGTAQMRFQPHLGRYLAAAAENVV  661 (792)
Q Consensus       595 -~h~~~V~sl~fspd~---~~-ll~sgs~Dg~I~iwdl~~~~~---~---~~~--~~~~~~v~~sp~~~~lla~s~dg~I  661 (792)
                       .....+..+.|..++   .. +++.-..-+.|+.||+...+.   .   +..  ...+.+++.+.++++++.|+.||.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence             233445667787664   22 333334456677776653222   1   111  2368899999999999999999999


Q ss_pred             EEEECCCCeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 003842          662 SILDAETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVG  708 (792)
Q Consensus       662 ~i~D~~t~~~~~~l~-~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~  708 (792)
                      .||+..+.+++...+ .|...|+.+.|+||.+++++.+.+ .+.|..+.
T Consensus       306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            999999987776554 599999999999999999998888 77777664

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.61  E-value=6.3e-14  Score=142.81  Aligned_cols=271  Identities=18%  Similarity=0.198  Sum_probs=192.3

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCCCceeEEecc
Q 003842          517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMG  595 (792)
Q Consensus       517 ~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~V~IWdl~s~~~~i~~~~~  595 (792)
                      -++|||+|+++|+++.- .+.|-|.++......+.. -..|.-|.|..|..+++++ ..|+.|.+|++... +-...+..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIde   89 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDE   89 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEecc
Confidence            46899999999999855 788888888765554432 4567788999887766555 66889999999873 44455666


Q ss_pred             cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE--eeCCeeEEEEecCCCEEEEEEc----------------
Q 003842          596 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAA----------------  657 (792)
Q Consensus       596 h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~lla~s~----------------  657 (792)
                      ....+.+++|+|||++++.+...|-.|.+|.+.+.++...  .+.....++|++++.+.+..+.                
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~  169 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI  169 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence            7788999999999999999999999999999998765533  3444556677777655444332                


Q ss_pred             --------------------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-----
Q 003842          658 --------------------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-----  711 (792)
Q Consensus       658 --------------------dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~-----  711 (792)
                                          +..+.|||.--...+..+. ..-.+..++|+|.+.+|+.|+.| .++|.+--+.+     
T Consensus       170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef  248 (447)
T KOG4497|consen  170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF  248 (447)
T ss_pred             HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence                                1234445533222222221 22458889999999999999999 77664321100     


Q ss_pred             ------------------------------------------C----------cceEEEee------cCCCceEEEEEeC
Q 003842          712 ------------------------------------------E----------GECVHELS------CNGNKFHSCVFHP  733 (792)
Q Consensus       712 ------------------------------------------~----------~~~i~~~~------~~~~~i~si~fsp  733 (792)
                                                                .          ...+..++      ...-.+..++|++
T Consensus       249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~  328 (447)
T KOG4497|consen  249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC  328 (447)
T ss_pred             ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence                                                      0          00000111      1122356789999


Q ss_pred             CCCEEEEEEcC--CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          734 TYPSLLVIGCY--QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       734 dg~~L~sgs~d--g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      |..++++-.+.  +.+.+||+...+...+.....+|....|+|....|+.+....++++|
T Consensus       329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W  388 (447)
T KOG4497|consen  329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFW  388 (447)
T ss_pred             CceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence            99988887655  58999999999888777778899999999998888888777788888

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=1.9e-13  Score=155.25  Aligned_cols=232  Identities=17%  Similarity=0.149  Sum_probs=166.3

Q ss_pred             CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCC
Q 003842          534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD  610 (792)
Q Consensus       534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D---g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~  610 (792)
                      ..|++||.+. .....+..+...+.+.+|+||++.|+.++.+   ..|++||+.+ +.. ..+..+.+...++.|+|+++
T Consensus       184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~-~~l~~~~g~~~~~~~SpDG~  260 (433)
T PRK04922        184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQR-ELVASFRGINGAPSFSPDGR  260 (433)
T ss_pred             EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCE-EEeccCCCCccCceECCCCC
Confidence            4689999864 4455666777889999999999999888744   3699999976 332 33334455566889999999


Q ss_pred             eEEEEEeCCC--cEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEc-CC--eEEEEECCCCeEEEEecCCCCCeE
Q 003842          611 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPID  683 (792)
Q Consensus       611 ~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~-dg--~I~i~D~~t~~~~~~l~~h~~~V~  683 (792)
                      .++++.+.+|  .|++||+.+++.......  .....+|+|++.++++++. ++  .|+++|+.+++..... .+.....
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~  339 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNA  339 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCcc
Confidence            8887777666  599999998876543322  2356899999999888775 33  4777888776543322 2334455


Q ss_pred             EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCc
Q 003842          684 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENK  756 (792)
Q Consensus       684 sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d---g~I~IwDl~~~~  756 (792)
                      .++|+|||++|+..+.+    .|.+||+.++..   . .+. +......+.|+|||++|+..+.+   ..|+++++..+.
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~  414 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---R-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV  414 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEECCCCCe---E-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence            78999999998876532    699999976532   1 222 22234567999999998887764   368889997766


Q ss_pred             EEEEcccCCCeEEEEEeC
Q 003842          757 TMTLTAHEGLIAALAVST  774 (792)
Q Consensus       757 ~~~~~~h~~~V~sl~fsp  774 (792)
                      ...+..+.+.+...+|+|
T Consensus       415 ~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        415 RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             eEEcccCCCCCCCCccCC
Confidence            666666677788888876

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.60  E-value=1.7e-14  Score=157.01  Aligned_cols=238  Identities=14%  Similarity=0.235  Sum_probs=169.9

Q ss_pred             EcCCCCEEEE--EeCCCeEEEEECCC-CceeEE-ec--cCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCC-----
Q 003842          520 FSSDGKLLAT--GGHDKKAVLWHTDT-LKSKTN-LE--EHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG-----  587 (792)
Q Consensus       520 fspdg~~Las--gs~Dg~I~vWdl~t-~~~~~~-l~--~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~-----  587 (792)
                      |+.+.+++|+  .+..|.|-||++.. |+.... +.  .....|+++.|.| |...|++++.||.|+||.+..++     
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~  666 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE  666 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence            3344556665  45678999999874 222211 11  2456799999999 77799999999999999997644     


Q ss_pred             -ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEEE
Q 003842          588 -YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSI  663 (792)
Q Consensus       588 -~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i  663 (792)
                       .+...++.|...|++|.|+|-...++++++.|-+|++||+.+++....+.   +.+..++|+|+|..+++.+.||.|++
T Consensus       667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rV  746 (1012)
T KOG1445|consen  667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRV  746 (1012)
T ss_pred             CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEE
Confidence             34567788999999999999988899999999999999999988766654   45788999999999999999999999


Q ss_pred             EECCCCe-EEEEecCC-CCCeEEEEEcCCCCEEEEEeCC-----eEEEEECCCCCCcceEEEee-cCCCceEEEEEeCCC
Q 003842          664 LDAETQA-CRLSLQGH-TKPIDSVCWDPSGELLASVSED-----SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTY  735 (792)
Q Consensus       664 ~D~~t~~-~~~~l~~h-~~~V~sv~~spdg~~Las~s~d-----~I~IwDl~s~~~~~~i~~~~-~~~~~i~si~fspdg  735 (792)
                      |..++++ .++.-.+- ...--.|.|.-||+++++.+.|     .|.+||..+-.. ..+.... .....+.--.+.+|.
T Consensus       747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lDvaps~LvP~YD~Ds  825 (1012)
T KOG1445|consen  747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLYTQVLDVAPSPLVPHYDYDS  825 (1012)
T ss_pred             eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-CcceeeeecccCccccccccCCC
Confidence            9998874 34433321 1223357788899998887766     488888765421 1222111 111112222455565


Q ss_pred             CE-EEEEEcCCeEEEEECCCCcEE
Q 003842          736 PS-LLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       736 ~~-L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      .. |++|-.|..|++|.+-....+
T Consensus       826 ~~lfltGKGD~~v~~yEv~~esPy  849 (1012)
T KOG1445|consen  826 NVLFLTGKGDRFVNMYEVIYESPY  849 (1012)
T ss_pred             ceEEEecCCCceEEEEEecCCCce
Confidence            54 556667789999998655443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.60  E-value=2.7e-15  Score=167.94  Aligned_cols=241  Identities=20%  Similarity=0.235  Sum_probs=182.2

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      +...++||.+.|+.++.+.+..++|+++.|..|+||.+.++..+..+.+|++.|++|+|+|-.    +.+.||++++||.
T Consensus       224 ~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~  299 (1113)
T KOG0644|consen  224 CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDA  299 (1113)
T ss_pred             hhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccc
Confidence            456688999999999999999999999999999999999999999999999999999999964    7889999999999


Q ss_pred             CCCCceeEEe----c-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCC-CEEEEEEc
Q 003842          584 DNPGYSLRTF----M-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL-GRYLAAAA  657 (792)
Q Consensus       584 ~s~~~~i~~~----~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~-~~lla~s~  657 (792)
                      +-  ..+...    . ....-+.++.|...+.. +++++.|+.-..|.+....+....   ..-+.++.+. .+.+++-.
T Consensus       300 r~--~~~~y~prp~~~~~~~~~~s~~~~~~~~~-f~Tgs~d~ea~n~e~~~l~~~~~~---lif~t~ssd~~~~~~~ar~  373 (1113)
T KOG0644|consen  300 RL--EPRIYVPRPLKFTEKDLVDSILFENNGDR-FLTGSRDGEARNHEFEQLAWRSNL---LIFVTRSSDLSSIVVTARN  373 (1113)
T ss_pred             cc--cccccCCCCCCcccccceeeeeccccccc-cccccCCcccccchhhHhhhhccc---eEEEeccccccccceeeee
Confidence            82  111111    0 12345666777666554 559999999988876543221110   0001111122 34455556


Q ss_pred             CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003842          658 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY  735 (792)
Q Consensus       658 dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~-~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg  735 (792)
                      +-.+.+|++.++.....+.+|...+..+.++|-.. +..+++.| ...|||+-.+..   ++.+......+..++|++||
T Consensus       374 ~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p---ik~y~~gh~kl~d~kFSqdg  450 (1113)
T KOG0644|consen  374 DHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP---IKHYFIGHGKLVDGKFSQDG  450 (1113)
T ss_pred             eeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc---ceeeecccceeeccccCCCC
Confidence            77899999999999999999999999999999555 44566777 999999987743   33333346778899999999


Q ss_pred             CEEEEEEcCCeEEEEECCCCcE
Q 003842          736 PSLLVIGCYQSLELWNMSENKT  757 (792)
Q Consensus       736 ~~L~sgs~dg~I~IwDl~~~~~  757 (792)
                      ..++....-|.++|+....++.
T Consensus       451 ts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  451 TSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             ceEecCCCCCceEEeccCCCcc
Confidence            9999998889999998765543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.60  E-value=1.2e-13  Score=144.67  Aligned_cols=237  Identities=16%  Similarity=0.184  Sum_probs=158.9

Q ss_pred             cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEE
Q 003842          500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR  579 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~  579 (792)
                      ..+...+.+++|...|+.++|++|+.++++++.|..+++||+..|.....+.+|...|..++|.|-+.++++-+.|...+
T Consensus       111 e~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~  190 (434)
T KOG1009|consen  111 EKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPE  190 (434)
T ss_pred             cceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccc
Confidence            44778888999999999999999999999999999999999999999999999999999999999999999999999777


Q ss_pred             EEeCCCCCceeEEecccCC-CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEc-
Q 003842          580 VWDADNPGYSLRTFMGHSA-SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-  657 (792)
Q Consensus       580 IWdl~s~~~~i~~~~~h~~-~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~-  657 (792)
                      ++.+.... .+.   .|.. .+....+.+.         .....++|--++.      +.-...++|+|++..+++.+. 
T Consensus       191 ~~~~~~~~-~~~---~~~~~~m~~~~~~~~---------e~~s~rLfhDeTl------ksFFrRlsfTPdG~llvtPag~  251 (434)
T KOG1009|consen  191 GFSAKLKQ-VIK---RHGLDIMPAKAFNER---------EGKSTRLFHDETL------KSFFRRLSFTPDGSLLVTPAGL  251 (434)
T ss_pred             eeeeeeee-eee---eeeeeEeeecccCCC---------CcceeeeeecCch------hhhhhhcccCCCCcEEEcccce
Confidence            77775411 111   1110 0011111111         0111222221111      112234566666666655432 


Q ss_pred             ---C-----CeEEEEECCC-CeEEEEecCCCCCeEEEEEcC------------------CCCEEEEEeCCeEEEEECCCC
Q 003842          658 ---E-----NVVSILDAET-QACRLSLQGHTKPIDSVCWDP------------------SGELLASVSEDSVRVWTVGSG  710 (792)
Q Consensus       658 ---d-----g~I~i~D~~t-~~~~~~l~~h~~~V~sv~~sp------------------dg~~Las~s~d~I~IwDl~s~  710 (792)
                         .     +..++|+-.. .++...+..-..++..+.|+|                  .+..++.++.+.|+|||..+.
T Consensus       252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~  331 (434)
T KOG1009|consen  252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTL  331 (434)
T ss_pred             eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccc
Confidence               1     2234444332 234444444444444444443                  345678888899999999775


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 003842          711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT  757 (792)
Q Consensus       711 ~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~  757 (792)
                      ....++  -..|...|+.++|++||.++++.+.||...+..++..+.
T Consensus       332 ~P~~~v--~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  332 EPLAVV--DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             cceEEE--eeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence            433333  344778899999999999999999999777766655443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.60  E-value=9.6e-12  Score=137.07  Aligned_cols=271  Identities=14%  Similarity=0.179  Sum_probs=187.2

Q ss_pred             ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeC----CCeEEEEECCCC--c--eeEEeccCCCCEEEEEECCCCCeEEEE
Q 003842          501 SFKEANSVRASTSKVICCHFSSDGKLLATGGH----DKKAVLWHTDTL--K--SKTNLEEHSSLITDVRFSPSMPRLATS  572 (792)
Q Consensus       501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~----Dg~I~vWdl~t~--~--~~~~l~~h~~~V~~i~fspdg~~Lasg  572 (792)
                      .+..+..+. -......+++++++++|+++..    ++.|..|++...  .  .+............|++++++++|+++
T Consensus        26 ~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~va  104 (345)
T PF10282_consen   26 TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVA  104 (345)
T ss_dssp             EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred             CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEE
Confidence            344444422 3455778999999999999877    578999988753  3  333344345667789999999999888


Q ss_pred             eC-CCcEEEEeCCCCCceeEE--ec-----------ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eEE--
Q 003842          573 SF-DKTVRVWDADNPGYSLRT--FM-----------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTR--  634 (792)
Q Consensus       573 s~-Dg~V~IWdl~s~~~~i~~--~~-----------~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~--~~~--  634 (792)
                      .+ +|.|.+|++...+.....  ..           .......++.|+|++++++++.-....|++|++....  ...  
T Consensus       105 ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~  184 (345)
T PF10282_consen  105 NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD  184 (345)
T ss_dssp             ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred             EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence            75 899999999875543332  11           1235578999999999888777777889999998765  322  


Q ss_pred             Eee----CCeeEEEEecCCCEEEEEEc-CCeEEEEECC--CCe--EEEEecCC------CCCeEEEEEcCCCCEEEEEeC
Q 003842          635 VFK----GGTAQMRFQPHLGRYLAAAA-ENVVSILDAE--TQA--CRLSLQGH------TKPIDSVCWDPSGELLASVSE  699 (792)
Q Consensus       635 ~~~----~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~--t~~--~~~~l~~h------~~~V~sv~~spdg~~Las~s~  699 (792)
                      .+.    .+...+.|+|+++++++..+ ++.|.+|++.  ++.  .+..+...      ......|+++|||++|+++..
T Consensus       185 ~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr  264 (345)
T PF10282_consen  185 SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR  264 (345)
T ss_dssp             EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred             ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence            222    34577999999999888776 7789999887  443  22222211      125778999999999988876


Q ss_pred             C--eEEEEECC-CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEC--CCCcEEEEc--ccCCCeEEEE
Q 003842          700 D--SVRVWTVG-SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNM--SENKTMTLT--AHEGLIAALA  771 (792)
Q Consensus       700 d--~I~IwDl~-s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl--~~~~~~~~~--~h~~~V~sl~  771 (792)
                      +  .|.+|++. .......+..+.......+.++++|+|++|++++.+ +.|.+|++  .++.+....  ..-....||.
T Consensus       265 ~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~  344 (345)
T PF10282_consen  265 GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV  344 (345)
T ss_dssp             TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred             cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence            6  89999994 333456666777667778999999999999998854 68998866  566655332  2334566666


Q ss_pred             E
Q 003842          772 V  772 (792)
Q Consensus       772 f  772 (792)
                      |
T Consensus       345 f  345 (345)
T PF10282_consen  345 F  345 (345)
T ss_dssp             E
T ss_pred             C
Confidence            5

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.2e-12  Score=148.37  Aligned_cols=203  Identities=15%  Similarity=0.194  Sum_probs=147.0

Q ss_pred             cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeEE--EeeCCeeEEEEecCCCEE
Q 003842          577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTR--VFKGGTAQMRFQPHLGRY  652 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~--Dg~I~iwdl~~~~~~~--~~~~~~~~v~~sp~~~~l  652 (792)
                      .|.+||.+.  ...+.+..+...+.+.+|+|||+.++++...  +..|++||+.+++...  .+.+......|+|++.++
T Consensus       180 ~l~~~d~dg--~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        180 ELRVSDYDG--YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eEEEEcCCC--CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence            688888874  3334455567789999999999888766533  4579999998886443  345566778999999998


Q ss_pred             EEEEc-CC--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCc
Q 003842          653 LAAAA-EN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK  725 (792)
Q Consensus       653 la~s~-dg--~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~  725 (792)
                      +.... ++  .|++||+++++.... ..+...+...+|+|||+.|+.++++    .|+++|+.++.    ...+......
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~lt~~~~~  332 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRITWEGSQ  332 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEeecCCCC
Confidence            87643 44  699999998876543 3344567889999999988877754    45556765542    2233333445


Q ss_pred             eEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCc
Q 003842          726 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF  787 (792)
Q Consensus       726 i~si~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~  787 (792)
                      ....+|+|||++|+..+.++   .|++||+.++....+... .......|+|||++|+.++.|+.
T Consensus       333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCC
Confidence            56789999999998876543   689999998876655432 23457889999999999988765

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.59  E-value=7.9e-13  Score=146.03  Aligned_cols=242  Identities=14%  Similarity=0.150  Sum_probs=160.1

Q ss_pred             eEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEEeccC-------CCCEEEEEECCCCCeEEEEeC-CCcEEEEeCCC
Q 003842          515 VICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSPSMPRLATSSF-DKTVRVWDADN  585 (792)
Q Consensus       515 V~~lafspdg~~Lasgs-~Dg~I~vWdl~t~~~~~~l~~h-------~~~V~~i~fspdg~~Lasgs~-Dg~V~IWdl~s  585 (792)
                      ..++++|+||+++++++ .++.|.|+|.++.+.++.+...       ...+..|..++....+++.-. .+.|.+.|...
T Consensus        80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d  159 (369)
T PF02239_consen   80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD  159 (369)
T ss_dssp             EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred             cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence            67899999999999876 5899999999999999887642       356888988998886666555 47888888876


Q ss_pred             CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe------eEEEEecCCCE--------
Q 003842          586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT------AQMRFQPHLGR--------  651 (792)
Q Consensus       586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~------~~v~~sp~~~~--------  651 (792)
                      ...................|.|++++++++...+..|-++|..+++.+..+..+.      ..--.+|..+.        
T Consensus       160 ~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~  239 (369)
T PF02239_consen  160 PKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLG  239 (369)
T ss_dssp             SSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSS
T ss_pred             ccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccc
Confidence            5444444444566788999999999888878888899999999998876653211      00112333222        


Q ss_pred             --EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE---eCC--eEEEEECCCCCCcceEEEeec-CC
Q 003842          652 --YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV---SED--SVRVWTVGSGSEGECVHELSC-NG  723 (792)
Q Consensus       652 --lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~---s~d--~I~IwDl~s~~~~~~i~~~~~-~~  723 (792)
                        .+.....+.+.+||..+.+.+.++...... .-+..+|+++++++.   +.+  .|.++|.++.   +.+..+.. ..
T Consensus       240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl---~~~~~i~~~~~  315 (369)
T PF02239_consen  240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL---KVVKTITPGPG  315 (369)
T ss_dssp             SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT---EEEE-HHHHHT
T ss_pred             ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc---ceeEEEeccCC
Confidence              223333455667888899999999876666 678889999999998   444  8999999876   55555542 23


Q ss_pred             CceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEE
Q 003842          724 NKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMTL  760 (792)
Q Consensus       724 ~~i~si~fspdg~~L~sgs~dg--~I~IwDl~~~~~~~~  760 (792)
                      ..+..+.|+++|++++++..++  .|.|||..+.+.+..
T Consensus       316 ~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~  354 (369)
T PF02239_consen  316 KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR  354 (369)
T ss_dssp             --EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence            3589999999999888776653  699999999998743

...

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.58  E-value=1.9e-14  Score=154.46  Aligned_cols=204  Identities=16%  Similarity=0.210  Sum_probs=163.2

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEE
Q 003842          525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD  604 (792)
Q Consensus       525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~  604 (792)
                      ..|+.++.||.+.|.+ +.++....+..|.+.|.|-.|+|||.-|+++++||.|++|.-.  +....++.-....|.|++
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRSTVVQNEESIRCAR  152 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHHHhhcCceeEEEE
Confidence            3678888999998876 5678888899999999999999999999999999999999875  344444555678899999


Q ss_pred             EcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE---eeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC
Q 003842          605 FHPNKDDLICSCDGDGEIRYWSINNGSCTRV---FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP  681 (792)
Q Consensus       605 fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~---~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~  681 (792)
                      |.|+.+.++++.+  +.+.|=.+.....+-.   +.+-+.++.|++..+.+++|+.|-..+|||.. |..++.-..|+.+
T Consensus       153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~  229 (737)
T KOG1524|consen  153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA  229 (737)
T ss_pred             ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence            9999988887664  4455544443333322   34557889999999999999999999999975 5667777789999


Q ss_pred             eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003842          682 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL  749 (792)
Q Consensus       682 V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~I  749 (792)
                      |++++|.|+ +.++.++.+++++=..              ..+.|..++|++||.-+++|+..|.+.+
T Consensus       230 ITSva~npd-~~~~v~S~nt~R~~~p--------------~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  230 ITSVAFNPE-KDYLLWSYNTARFSSP--------------RVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeeeeeccc-cceeeeeeeeeeecCC--------------CccceEEEEEcCCCceeeccccCceEEE
Confidence            999999999 7777777776663222              3457889999999999999999886554

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.58  E-value=2.1e-13  Score=139.11  Aligned_cols=226  Identities=16%  Similarity=0.295  Sum_probs=176.8

Q ss_pred             eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC--ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc
Q 003842          550 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI  627 (792)
Q Consensus       550 l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~--~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl  627 (792)
                      +..-..+|+|.+|++|+..+|++.....|.||......  +...++..|...|++|+|.|..++++ +|+.|..-++|..
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~   84 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQ   84 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCcccccc
Confidence            33345789999999999999999999999999987644  56788999999999999999987655 9999999999999


Q ss_pred             C-CCe-----eEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE----EEecCCCCCeEEEEEcCCCCEEEEE
Q 003842          628 N-NGS-----CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR----LSLQGHTKPIDSVCWDPSGELLASV  697 (792)
Q Consensus       628 ~-~~~-----~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~----~~l~~h~~~V~sv~~spdg~~Las~  697 (792)
                      . .++     .+..++....++.|+|.+++|++++.-..|.||-.+...--    ..-+.+.+.|++++|+|++-+|++|
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            4 443     34456778899999999999999999999999887754322    2233466789999999999999999


Q ss_pred             eCC-eEEEEEC-----CCCC----------CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--EEE
Q 003842          698 SED-SVRVWTV-----GSGS----------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TMT  759 (792)
Q Consensus       698 s~d-~I~IwDl-----~s~~----------~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~--~~~  759 (792)
                      +.| .++||..     +...          ....+.++....+.+..+.|+|+|..|+..+.|..|.+-|.....  ...
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~  244 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS  244 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence            999 8888864     2110          012233444567789999999999999999999999999988775  223


Q ss_pred             EcccCCCeEEEEEeCCC
Q 003842          760 LTAHEGLIAALAVSTET  776 (792)
Q Consensus       760 ~~~h~~~V~sl~fspdg  776 (792)
                      +....-+..++.|-.+.
T Consensus       245 ~~~~~lP~ls~~~ise~  261 (361)
T KOG1523|consen  245 VATAQLPLLSVSWISEN  261 (361)
T ss_pred             hhhccCCceeeEeecCC
Confidence            33333566677765443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.58  E-value=1.6e-13  Score=147.84  Aligned_cols=167  Identities=15%  Similarity=0.246  Sum_probs=131.6

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeEEec----cCCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCC---------
Q 003842          522 SDGKLLATGGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPG---------  587 (792)
Q Consensus       522 pdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~----~h~~~V~~i~fspdg-~~Lasgs~Dg~V~IWdl~s~~---------  587 (792)
                      +++--|+.|-..|.|.++|....+..+.+.    -....|+||.|-|.+ ..|+++-.+|.+++||.+...         
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            456677888888899988876533222221    134789999999954 477788889999999875210         


Q ss_pred             ------------------ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE---EeeCCeeEEEEe
Q 003842          588 ------------------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VFKGGTAQMRFQ  646 (792)
Q Consensus       588 ------------------~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~---~~~~~~~~v~~s  646 (792)
                                        .++..+....+.|..++|+|||. ++|+.+.||.+||||..+.+++.   .+.++..|++|+
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS  341 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence                              11222223346789999999876 55688999999999999877654   456889999999


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcC
Q 003842          647 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP  689 (792)
Q Consensus       647 p~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp  689 (792)
                      ||+++|++|++|..|.||.+..++++..-.+|+.+|..|+|+|
T Consensus       342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            9999999999999999999999999999999999999999997

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=1.4e-13  Score=143.73  Aligned_cols=260  Identities=13%  Similarity=0.205  Sum_probs=196.5

Q ss_pred             cCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCceeEEe------ccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          510 ASTSKVICCHFSSDGK--LLATGGHDKKAVLWHTDTLKSKTNL------EEHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       510 ~H~~~V~~lafspdg~--~Lasgs~Dg~I~vWdl~t~~~~~~l------~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      .-...|..++|..|++  .|...+.|..+..+++....+...+      ......|..++..  ...|++|-.+|.+.+|
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR  130 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence            3455688888887665  4444546777777777666554443      3345566666554  3378889999999999


Q ss_pred             eCCCCC---ceeEEecccCCCeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCeeEEEeeC------------CeeEEE
Q 003842          582 DADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRVFKG------------GTAQMR  644 (792)
Q Consensus       582 dl~s~~---~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D--g~I~iwdl~~~~~~~~~~~------------~~~~v~  644 (792)
                      ....+.   ..+..+..+ ..+..+.-++...+++++|+..  ..+.|||++..+.+..-+.            -...+.
T Consensus       131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~  209 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR  209 (412)
T ss_pred             eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence            998432   223333323 5577788888888999999999  8999999998865544322            234577


Q ss_pred             EecC--CCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEE-Ee
Q 003842          645 FQPH--LGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH-EL  719 (792)
Q Consensus       645 ~sp~--~~~lla~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~-~~  719 (792)
                      |.+.  ...|++++.-+.|++||.+.+ +++..|.-.+.+|+++...|++++|+++... .+..||++.+   +... .+
T Consensus       210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~---kl~g~~~  286 (412)
T KOG3881|consen  210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG---KLLGCGL  286 (412)
T ss_pred             ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc---eeecccc
Confidence            8877  788999999999999999986 6788888888999999999999999999887 9999999877   3333 36


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCC
Q 003842          720 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE  775 (792)
Q Consensus       720 ~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspd  775 (792)
                      .+..+.|+++..+|..++|++++-|..|+|+|+.+.+.+.-..-...+++|.+.++
T Consensus       287 kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  287 KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             CCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            77788999999999999999999999999999999776644444555677776543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=1.6e-13  Score=144.74  Aligned_cols=190  Identities=19%  Similarity=0.238  Sum_probs=143.9

Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-e--------EE--EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003842          602 SLDFHPNKDDLICSCDGDGEIRYWSINNGS-C--------TR--VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA  670 (792)
Q Consensus       602 sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~--------~~--~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~  670 (792)
                      ....+|.++..+.....++...-|..-... +        ..  ...+...+++|+.++..+.+++.||+++||+.....
T Consensus        98 ~~~~h~~~~~~~~k~~~~~~~~~~e~~~~~d~~~~~~a~v~~~l~~~g~~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~  177 (398)
T KOG0771|consen   98 RESVHPNGNGRARKLPSGCECFHFEFVASSDFNAETAANVYQKLVDFGQQKVVAFNGDGSKLATGGTDGTLRVWEWPSML  177 (398)
T ss_pred             hhhccccCCeeeeecCCcccccccccccccccchhhhhhHhHHHhhcCcceEEEEcCCCCEeeeccccceEEEEecCcch
Confidence            344556655555555555544444432221 0        00  112334779999999999999999999999988888


Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCc-----------------------ceEEEe--------
Q 003842          671 CRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG-----------------------ECVHEL--------  719 (792)
Q Consensus       671 ~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~-----------------------~~i~~~--------  719 (792)
                      .+.....|...|.++.|+|||++|++.+.|..+||+++++...                       ..++..        
T Consensus       178 t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~  257 (398)
T KOG0771|consen  178 TILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGG  257 (398)
T ss_pred             hhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCc
Confidence            8888888999999999999999999999999999999877100                       000000        


Q ss_pred             --------------------ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCC
Q 003842          720 --------------------SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETG  777 (792)
Q Consensus       720 --------------------~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fspdg~  777 (792)
                                          ......|.+++++++|++++.|+.||.|-||+..+.+.+  ....|...|+.+.|+||.+
T Consensus       258 v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr  337 (398)
T KOG0771|consen  258 VRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR  337 (398)
T ss_pred             eeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcC
Confidence                                001236889999999999999999999999999998887  4457999999999999999


Q ss_pred             EEEEEeCCCcEEEe
Q 003842          778 YVASASHDKFVKLW  791 (792)
Q Consensus       778 ~LaSgs~DG~I~IW  791 (792)
                      ++++.+.|..+.|.
T Consensus       338 ~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  338 YLASVSSDNEAAVT  351 (398)
T ss_pred             cccccccCCceeEE
Confidence            99998888777653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=3e-13  Score=155.12  Aligned_cols=252  Identities=20%  Similarity=0.307  Sum_probs=187.7

Q ss_pred             CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEeccc---CCCeEEEEEcC-C
Q 003842          533 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH---SASVMSLDFHP-N  608 (792)
Q Consensus       533 Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h---~~~V~sl~fsp-d  608 (792)
                      +..|..||....      .+....-..+.|+|-...++++...-.|+|||.+. +..+..|..+   ...|+.+++.. +
T Consensus      1049 t~~i~~W~~~~~------~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~-~~~l~~F~n~~~~~t~Vs~l~liNe~ 1121 (1387)
T KOG1517|consen 1049 TNPIGNWDQKFM------TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEK-GRLLNGFDNGAFPDTRVSDLELINEQ 1121 (1387)
T ss_pred             cccccchHHHHH------hcCCCCCceeeecCCCceeEEcCCcceEEEEeccc-CceeccccCCCCCCCccceeeeeccc
Confidence            344677875321      11222456678888888999999888999999987 5666666543   45688888753 4


Q ss_pred             CCeEEEEEeCCCcEEEEEcCC-----CeeEEEee----------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003842          609 KDDLICSCDGDGEIRYWSINN-----GSCTRVFK----------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL  673 (792)
Q Consensus       609 ~~~ll~sgs~Dg~I~iwdl~~-----~~~~~~~~----------~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~  673 (792)
                      +..++++|+.||.||||+--.     .+.+..+.          +....+.|.-..+++++++.-..|+|||.....++.
T Consensus      1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred             chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence            556788999999999997432     23333221          122346788888999999999999999999988777


Q ss_pred             EecC-CCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc--eEEEEEeCCCC-EEEEEEcCCeE
Q 003842          674 SLQG-HTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYP-SLLVIGCYQSL  747 (792)
Q Consensus       674 ~l~~-h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~--i~si~fspdg~-~L~sgs~dg~I  747 (792)
                      .+.. ....|+++.-+- .|+.|++|..| .|++||.+.......+.....|...  |..+.+.+.|- .|++|+.+|.|
T Consensus      1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred             ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence            6654 445577765443 46899999988 9999999987665667777777776  99999998664 59999999999


Q ss_pred             EEEECCCCcEE---EEcccC--C-CeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          748 ELWNMSENKTM---TLTAHE--G-LIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       748 ~IwDl~~~~~~---~~~~h~--~-~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ++||++.....   ....|.  + .++++..+++..+||+|+. +.|+||+
T Consensus      1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred             EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence            99999884322   333443  3 5999999999999999988 9999996

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=8.8e-13  Score=149.49  Aligned_cols=233  Identities=18%  Similarity=0.158  Sum_probs=158.4

Q ss_pred             CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCC
Q 003842          534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD  610 (792)
Q Consensus       534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D---g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~  610 (792)
                      ..|.+||.+ +.....+..+...+.+.+|+|||+.|+..+.+   ..|++||+.+ +.. ..+....+.+.+..|+||++
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~-~~l~~~~g~~~~~~~SPDG~  252 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRR-RVVANFKGSNSAPAWSPDGR  252 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCE-EEeecCCCCccceEECCCCC
Confidence            467777764 45555666778889999999999999887653   3599999986 332 23333445667899999999


Q ss_pred             eEEEEEeCCCcEEEEE--cCCCeeEEEee--CCeeEEEEecCCCEEEEEEc-CCe--EEEEECCCCeEEEEecCCCCCeE
Q 003842          611 DLICSCDGDGEIRYWS--INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENV--VSILDAETQACRLSLQGHTKPID  683 (792)
Q Consensus       611 ~ll~sgs~Dg~I~iwd--l~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~-dg~--I~i~D~~t~~~~~~l~~h~~~V~  683 (792)
                      .++++.+.+|...||.  +..+.......  .......|+|++.+++.++. ++.  |+++|+.++...... .+.....
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~  331 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT  331 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence            8888888888766665  44444332222  23456789999999887765 344  445555555433222 2223345


Q ss_pred             EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 003842          684 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK  756 (792)
Q Consensus       684 sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---~I~IwDl~~~~  756 (792)
                      ..+|+|||++|+..+.+    .|++||+.++..    ..+.. ......+.|+||+++|+.++.++   .+++.++....
T Consensus       332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~  406 (427)
T PRK02889        332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI  406 (427)
T ss_pred             ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence            68899999999876643    599999987632    12222 22346789999999999888664   57777886544


Q ss_pred             EEEEcccCCCeEEEEEeCC
Q 003842          757 TMTLTAHEGLIAALAVSTE  775 (792)
Q Consensus       757 ~~~~~~h~~~V~sl~fspd  775 (792)
                      ...+..+.+.+...+|+|-
T Consensus       407 ~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        407 KQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             eEEeecCCCCCCCCccCCC
Confidence            4456667788888899873

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.55  E-value=3.1e-11  Score=133.01  Aligned_cols=266  Identities=16%  Similarity=0.168  Sum_probs=180.7

Q ss_pred             EEEEeCC----CeEEEEEC--CCCceeEEe-ccCCCCEEEEEECCCCCeEEEEeC----CCcEEEEeCCCC-Cc--eeEE
Q 003842          527 LATGGHD----KKAVLWHT--DTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSF----DKTVRVWDADNP-GY--SLRT  592 (792)
Q Consensus       527 Lasgs~D----g~I~vWdl--~t~~~~~~l-~~h~~~V~~i~fspdg~~Lasgs~----Dg~V~IWdl~s~-~~--~i~~  592 (792)
                      +++|+++    +.|++|++  ++++....- .........++++|++++|+++..    ++.|..|++... +.  .+..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            4566666    68999888  444432221 124455677899999999999877    578999999874 22  2233


Q ss_pred             ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEE---e-------------eCCeeEEEEecCCCEEEEE
Q 003842          593 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F-------------KGGTAQMRFQPHLGRYLAA  655 (792)
Q Consensus       593 ~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~---~-------------~~~~~~v~~sp~~~~lla~  655 (792)
                      ..........|+++|+++.++++...+|.|.+|++.. +.....   +             ..+..++.++|++++++++
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence            3334455678999999999888888899999999987 443322   1             1245679999999999887


Q ss_pred             Ec-CCeEEEEECCCCe--E--EEEec-CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC-CCcceEEEeecC----
Q 003842          656 AA-ENVVSILDAETQA--C--RLSLQ-GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSCN----  722 (792)
Q Consensus       656 s~-dg~I~i~D~~t~~--~--~~~l~-~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~-~~~~~i~~~~~~----  722 (792)
                      .. ...|.+|++....  .  ...+. .....-+.++|+|+++++++..+.  .|.+|++... .....+..+...    
T Consensus       162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~  241 (345)
T PF10282_consen  162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF  241 (345)
T ss_dssp             ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred             ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence            65 5689999987654  3  22222 234557889999999998887765  8999998722 122333333321    


Q ss_pred             --CCceEEEEEeCCCCEEEEEEcC-CeEEEEECC--CCcEE---EEcccCCCeEEEEEeCCCCEEEEEeC-CCcEEEeC
Q 003842          723 --GNKFHSCVFHPTYPSLLVIGCY-QSLELWNMS--ENKTM---TLTAHEGLIAALAVSTETGYVASASH-DKFVKLWK  792 (792)
Q Consensus       723 --~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~--~~~~~---~~~~h~~~V~sl~fspdg~~LaSgs~-DG~I~IWd  792 (792)
                        ......++++|||++|+++... +.|.+|+++  ++++.   .+.......+.++|+|+|++|++++. ++.|.+|+
T Consensus       242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~  320 (345)
T PF10282_consen  242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD  320 (345)
T ss_dssp             CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence              1257889999999999988754 689999983  34443   22233455899999999999998875 67888874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.55  E-value=2.6e-12  Score=138.16  Aligned_cols=271  Identities=16%  Similarity=0.219  Sum_probs=193.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCC---------------CeEEEEECCCCceeEEeccCCCC--EE-EEEECCCCCeEEEEeC
Q 003842          513 SKVICCHFSSDGKLLATGGHD---------------KKAVLWHTDTLKSKTNLEEHSSL--IT-DVRFSPSMPRLATSSF  574 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~D---------------g~I~vWdl~t~~~~~~l~~h~~~--V~-~i~fspdg~~Lasgs~  574 (792)
                      ..|..+.|+|.++||.+-+..               ..+.|||+.++..+..+..-...  .+ -+.|+.+.+++|-. .
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v  150 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V  150 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence            348889999999999986543               35999999999999998876655  56 78899888876655 3


Q ss_pred             CCcEEEEeCCCCCceeEEeccc-CCCeEEEEEcCCCCe-EEEE-----EeCCCcEEEEEcCCCeeEEE---eeCCeeEEE
Q 003842          575 DKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDD-LICS-----CDGDGEIRYWSINNGSCTRV---FKGGTAQMR  644 (792)
Q Consensus       575 Dg~V~IWdl~s~~~~i~~~~~h-~~~V~sl~fspd~~~-ll~s-----gs~Dg~I~iwdl~~~~~~~~---~~~~~~~v~  644 (792)
                      ...++|+++ ++......+... ...|....|+|.+++ .||.     .+.++.+++|.+..++.+..   ++.....+.
T Consensus       151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk  229 (561)
T COG5354         151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK  229 (561)
T ss_pred             cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence            445999997 323222222211 356888889887432 2222     35578999999987766543   445666788


Q ss_pred             EecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe--CC-eEEEEECCCC
Q 003842          645 FQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSG  710 (792)
Q Consensus       645 ~sp~~~~lla~s~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s--~d-~I~IwDl~s~  710 (792)
                      |.+.++++++-..           +..++|+++....+.... ...++|..++|.|.++.+++++  .. .+.++|++..
T Consensus       230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             EecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc
Confidence            9999988766432           357888988855544443 5678999999999998777766  34 8999999753


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe----
Q 003842          711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS----  783 (792)
Q Consensus       711 ~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d---g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs----  783 (792)
                          ..  +......-..+.|+|.++++++++-+   |.|.+||......+.-.-......-+.|+||+.++.+..    
T Consensus       309 ----l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k  382 (561)
T COG5354         309 ----LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK  382 (561)
T ss_pred             ----eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence                22  22334455678899999999998877   589999998776653222223345578999999887764    


Q ss_pred             --CCCcEEEeC
Q 003842          784 --HDKFVKLWK  792 (792)
Q Consensus       784 --~DG~I~IWd  792 (792)
                        .|..|+|||
T Consensus       383 ~~~Dn~i~l~~  393 (561)
T COG5354         383 LRVDNSIKLWD  393 (561)
T ss_pred             cccCcceEEEE
Confidence              378899996

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.55  E-value=4.1e-13  Score=137.85  Aligned_cols=275  Identities=18%  Similarity=0.314  Sum_probs=187.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----eeEEeccC------------CCCEEEEEECCCCC--eEEEE
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEH------------SSLITDVRFSPSMP--RLATS  572 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~-----~~~~l~~h------------~~~V~~i~fspdg~--~Lasg  572 (792)
                      .+-|.++.|..+|.+||+|..+|.|.+|.-+...     ....+..|            ...|..|.|.+++.  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4568999999999999999999999999654322     22233233            35688999998655  68888


Q ss_pred             eCCCcEEEEeCCCCCcee----------------------------------EEe-cccCCCeEEEEEcCCCCeEEEEEe
Q 003842          573 SFDKTVRVWDADNPGYSL----------------------------------RTF-MGHSASVMSLDFHPNKDDLICSCD  617 (792)
Q Consensus       573 s~Dg~V~IWdl~s~~~~i----------------------------------~~~-~~h~~~V~sl~fspd~~~ll~sgs  617 (792)
                      +.|++|++|.+...+...                                  +.+ ..|...|.+|.++.|...++ ++ 
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA-  182 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA-  182 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec-
Confidence            899999999987532111                                  111 25778899999999987665 44 


Q ss_pred             CCCcEEEEEcCCCe-eEEEe--e--------CCeeEEEEecCCC-EEEEEEcCCeEEEEECCCCeEE----EEec-----
Q 003842          618 GDGEIRYWSINNGS-CTRVF--K--------GGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACR----LSLQ-----  676 (792)
Q Consensus       618 ~Dg~I~iwdl~~~~-~~~~~--~--------~~~~~v~~sp~~~-~lla~s~dg~I~i~D~~t~~~~----~~l~-----  676 (792)
                      .|-.|.+|+++--. +....  +        .-+++..|+|... .++..++.|.|++.|++...+.    ..+.     
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            58899999987432 22222  1        2356677888764 4556677899999999853211    1111     


Q ss_pred             -------CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCC---------------CceEEEEEeCC
Q 003842          677 -------GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG---------------NKFHSCVFHPT  734 (792)
Q Consensus       677 -------~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~---------------~~i~si~fspd  734 (792)
                             +-...|..+.|+.+|+||++-..-+|+|||+....  +.+..+..|.               ..-..|+|+.+
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~  340 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN  340 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence                   11245788999999999998777799999997543  3333333332               11356889999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCcEE--EEc--------------------cc-------------CCCeEEEEEeCCCCEE
Q 003842          735 YPSLLVIGCYQSLELWNMSENKTM--TLT--------------------AH-------------EGLIAALAVSTETGYV  779 (792)
Q Consensus       735 g~~L~sgs~dg~I~IwDl~~~~~~--~~~--------------------~h-------------~~~V~sl~fspdg~~L  779 (792)
                      +.++++|+..+.+++|++..+...  ++.                    +.             ...|...+|+|..+.|
T Consensus       341 ~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~i  420 (433)
T KOG1354|consen  341 DSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSI  420 (433)
T ss_pred             cceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcccee
Confidence            999999999999999996554322  110                    10             1123445799999888


Q ss_pred             EEEeCCCcEEEe
Q 003842          780 ASASHDKFVKLW  791 (792)
Q Consensus       780 aSgs~DG~I~IW  791 (792)
                      |++..+ .++||
T Consensus       421 a~aatn-nlyif  431 (433)
T KOG1354|consen  421 AVAATN-NLYIF  431 (433)
T ss_pred             eeeecC-ceEEe
Confidence            887654 46655

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=8.7e-13  Score=149.57  Aligned_cols=222  Identities=18%  Similarity=0.228  Sum_probs=154.1

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEE-EEeCCCcEEEE
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVW  581 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~D---g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~La-sgs~Dg~V~IW  581 (792)
                      ..+..+...|.+.+|+|||+.|+..+.+   ..|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.+|...||
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  267 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY  267 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence            4455778889999999999999887753   359999999887543 333445677899999999876 46778887777


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc--CCCeeEEEe-eC-CeeEEEEecCCCEEEEEEc
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI--NNGSCTRVF-KG-GTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl--~~~~~~~~~-~~-~~~~v~~sp~~~~lla~s~  657 (792)
                      .++..+.....+..+...+....|+|||+.+++++..+|...+|.+  ..+...... .+ ......|+|++++++.++.
T Consensus       268 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~  347 (427)
T PRK02889        268 TVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR  347 (427)
T ss_pred             EEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence            6654344456666666667788999999988877666676666655  444433322 22 2345789999999988776


Q ss_pred             CC---eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEE
Q 003842          658 EN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCV  730 (792)
Q Consensus       658 dg---~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~  730 (792)
                      ++   .|++||+.+++...... . .....+.|+|||++|+.++.+    .+++.++. +   .....+..+.+.+...+
T Consensus       348 ~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~  421 (427)
T PRK02889        348 VGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPS  421 (427)
T ss_pred             cCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCc
Confidence            54   69999998886554322 2 334678999999988887754    35566663 2   23334444455666677


Q ss_pred             EeCC
Q 003842          731 FHPT  734 (792)
Q Consensus       731 fspd  734 (792)
                      |+|-
T Consensus       422 wsp~  425 (427)
T PRK02889        422 WGPF  425 (427)
T ss_pred             cCCC
Confidence            7763

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=2.6e-12  Score=146.10  Aligned_cols=221  Identities=18%  Similarity=0.245  Sum_probs=154.9

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEE-EEeCCC--c
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDK--T  577 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~D---g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~La-sgs~Dg--~  577 (792)
                      ..+.+..|...|.+.+|+|||+.|+.++.+   ..|++||+.+++... +..+.+...+++|+|||+.|+ +.+.+|  .
T Consensus       195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~  273 (433)
T PRK04922        195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPE  273 (433)
T ss_pred             CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence            345566778889999999999999988743   469999998876543 334445566889999999775 445555  5


Q ss_pred             EEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc--EEEEEcCCCeeEEEee-C-CeeEEEEecCCCEEE
Q 003842          578 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFK-G-GTAQMRFQPHLGRYL  653 (792)
Q Consensus       578 V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~--I~iwdl~~~~~~~~~~-~-~~~~v~~sp~~~~ll  653 (792)
                      |++||+.+ +. +..+..+......++|+||+..++++...+|.  |+++|+.+++..+... + ......|+|++++++
T Consensus       274 Iy~~d~~~-g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia  351 (433)
T PRK04922        274 IYVMDLGS-RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA  351 (433)
T ss_pred             EEEEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence            99999986 33 45555666666789999999988877766665  6777777766544332 2 234589999999998


Q ss_pred             EEEcCC---eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCce
Q 003842          654 AAAAEN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKF  726 (792)
Q Consensus       654 a~s~dg---~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i  726 (792)
                      ..+.++   .|.+||+.+++.. .+. +........|+|||++|+..+.+    .|+++++..    .....+..+...+
T Consensus       352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g----~~~~~l~~~~g~~  425 (433)
T PRK04922        352 MVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG----RVRQRLVSADGEV  425 (433)
T ss_pred             EEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC----CceEEcccCCCCC
Confidence            876543   6999999888765 333 22345567999999988776653    578888743    2333444444556


Q ss_pred             EEEEEeC
Q 003842          727 HSCVFHP  733 (792)
Q Consensus       727 ~si~fsp  733 (792)
                      ...+|+|
T Consensus       426 ~~p~wsp  432 (433)
T PRK04922        426 REPAWSP  432 (433)
T ss_pred             CCCccCC
Confidence            6667765

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.52  E-value=1e-12  Score=153.24  Aligned_cols=249  Identities=19%  Similarity=0.266  Sum_probs=173.5

Q ss_pred             EECCCCceeEEeccCCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCC------ceeEEecccCCCeEEEEEcCCCCe
Q 003842          539 WHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDD  611 (792)
Q Consensus       539 Wdl~t~~~~~~l~~h~~~V~~i~fspdg-~~Lasgs~Dg~V~IWdl~s~~------~~i~~~~~h~~~V~sl~fspd~~~  611 (792)
                      |+. .|..+..+..|...|..++.++.. .+|++|+.||+|+|||+.+-.      ....++......+.++.+.+.++.
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            554 467888889999999999998755 899999999999999997521      122344446778999999988765


Q ss_pred             EEEEEeCCCcEEEEEcCCCee-------EEEee----CCeeE-EEEecC-CC-EEEEEEcCCeEEEEECCCCeEEEEecC
Q 003842          612 LICSCDGDGEIRYWSINNGSC-------TRVFK----GGTAQ-MRFQPH-LG-RYLAAAAENVVSILDAETQACRLSLQG  677 (792)
Q Consensus       612 ll~sgs~Dg~I~iwdl~~~~~-------~~~~~----~~~~~-v~~sp~-~~-~lla~s~dg~I~i~D~~t~~~~~~l~~  677 (792)
                      ++ .++.||.|++.+++..+.       .+..+    +.+.. .+|... .. .++++...+.|..||+++.....+++.
T Consensus      1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred             EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence            54 669999999999976321       11111    11222 122222 23 577778889999999998876665543


Q ss_pred             --CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee-cCCCceEEEEEeCCCC---EEEEEE--cCCeEE
Q 003842          678 --HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYP---SLLVIG--CYQSLE  748 (792)
Q Consensus       678 --h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~-~~~~~i~si~fspdg~---~L~sgs--~dg~I~  748 (792)
                        ..+.|++++.+|.+.+++.|+.. .+.+||++-+   ..+..+. .+..++..+..+|-.+   .+++++  ..+.|.
T Consensus      1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred             CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence              45779999999999999999988 9999999865   4444333 2345677777766443   455444  457999


Q ss_pred             EEECCCCcEE-EEccc-------------------CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          749 LWNMSENKTM-TLTAH-------------------EGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       749 IwDl~~~~~~-~~~~h-------------------~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +|++.++.+. .+...                   .-.....++...+.++++|+.|..|+.||
T Consensus      1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred             eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence            9999988644 22111                   11122334444566899999999999998

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.51  E-value=5.1e-12  Score=129.07  Aligned_cols=229  Identities=13%  Similarity=0.212  Sum_probs=165.1

Q ss_pred             CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee-EEecccCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcC
Q 003842          556 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSIN  628 (792)
Q Consensus       556 ~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i-~~~~~h~~~V~sl~fspd~~~ll~sgs~D------g~I~iwdl~  628 (792)
                      ...+++|+-|...+++|..+| .+||+++--++.. +.+....-.+..+-|-  .+.+.++|+.+      ..|.|||-.
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence            345699999999999999888 9999997522211 1111111223333343  24555566554      579999977


Q ss_pred             CCeeEEE--eeCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC--e
Q 003842          629 NGSCTRV--FKGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQG--HTKPIDSVCWDPSGELLASVSED--S  701 (792)
Q Consensus       629 ~~~~~~~--~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~-t~~~~~~l~~--h~~~V~sv~~spdg~~Las~s~d--~  701 (792)
                      ..+++..  |..++..+++.++   .+++..++.|+||... +.+.++.+..  ....+.+++-.-+..+||.-+..  .
T Consensus        84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq  160 (346)
T KOG2111|consen   84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ  160 (346)
T ss_pred             cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence            7777765  4567888888765   4555667899999987 4455555543  23345555544455677776665  8


Q ss_pred             EEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEc--ccCCCeEEEEEeCCCC
Q 003842          702 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLT--AHEGLIAALAVSTETG  777 (792)
Q Consensus       702 I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~~~--~h~~~V~sl~fspdg~  777 (792)
                      |.|-|+..... ..-..+..|...|.+++++-+|..||+++..| -|+|||..+++.+ .+.  .....|.+|+|+|++.
T Consensus       161 vQi~dL~~~~~-~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s  239 (346)
T KOG2111|consen  161 VQIVDLASTKP-NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS  239 (346)
T ss_pred             EEEEEhhhcCc-CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence            99999976432 13467788999999999999999999999999 5899999999988 333  2346799999999999


Q ss_pred             EEEEEeCCCcEEEe
Q 003842          778 YVASASHDKFVKLW  791 (792)
Q Consensus       778 ~LaSgs~DG~I~IW  791 (792)
                      +||++|+.|+|+||
T Consensus       240 ~LavsSdKgTlHiF  253 (346)
T KOG2111|consen  240 WLAVSSDKGTLHIF  253 (346)
T ss_pred             EEEEEcCCCeEEEE
Confidence            99999999999997

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=1.2e-13  Score=148.68  Aligned_cols=214  Identities=19%  Similarity=0.282  Sum_probs=156.1

Q ss_pred             ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCC-CCeEEEEEeCCCcEE
Q 003842          545 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIR  623 (792)
Q Consensus       545 ~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd-~~~ll~sgs~Dg~I~  623 (792)
                      .....+.+|.+.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.....-++|...|.++.|-|. ++.++++|..|..|+
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            3456788999999999999999999999999999999998644444556799999999999885 567888999999999


Q ss_pred             EEEcCCCe----------eEEEee---CCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEE----------EecCCC
Q 003842          624 YWSINNGS----------CTRVFK---GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRL----------SLQGHT  679 (792)
Q Consensus       624 iwdl~~~~----------~~~~~~---~~~~~v~~sp~~-~~lla~s~dg~I~i~D~~t~~~~~----------~l~~h~  679 (792)
                      +||+...+          .++.+.   ..+..++..|++ ..+.+++.||+|+-||++......          .+...-
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            99998522          111222   234557777887 678899999999999998742111          011112


Q ss_pred             CCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCC---------------CcceEEEeec-C--------CC---ceEEEE
Q 003842          680 KPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGS---------------EGECVHELSC-N--------GN---KFHSCV  730 (792)
Q Consensus       680 ~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~---------------~~~~i~~~~~-~--------~~---~i~si~  730 (792)
                      -...|+.++|.. .+|++|+.| ..++||.+...               ...|+..+.. |        ..   .++.+.
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt  280 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT  280 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence            346789999954 588889999 99999953210               0112322211 1        11   146678


Q ss_pred             EeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          731 FHPTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       731 fspdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      |+|+|..|++.-....|++||+..++..
T Consensus       281 fnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  281 FNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             ECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            9999998888877779999999887644

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=8.2e-12  Score=135.23  Aligned_cols=267  Identities=14%  Similarity=0.197  Sum_probs=180.9

Q ss_pred             CeEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCceeEEecc--CCCCE-EEEEECCCCCeEEEEeCCCcEE
Q 003842          514 KVICCHFSSDGKLLATGGH-----------DKKAVLWHTDTLKSKTNLEE--HSSLI-TDVRFSPSMPRLATSSFDKTVR  579 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~-----------Dg~I~vWdl~t~~~~~~l~~--h~~~V-~~i~fspdg~~Lasgs~Dg~V~  579 (792)
                      .|.-+.|||+.+||+|-+.           ...|+|||+.+|...+.+..  ....+ .-+.||.|++++|.-..|+ |.
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-is  329 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-IS  329 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce-EE
Confidence            3888999999999998652           25799999999999888875  22223 3468999999999887755 99


Q ss_pred             EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeC-----CCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCE
Q 003842          580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-----DGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGR  651 (792)
Q Consensus       580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~-----Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~  651 (792)
                      ||+..+ -..+..-.-.-..|....|+|.+. +||--..     -..+.+-.+.++..++...   -....+.|-..|.+
T Consensus       330 IyEtps-f~lld~Kslki~gIr~FswsP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy  407 (698)
T KOG2314|consen  330 IYETPS-FMLLDKKSLKISGIRDFSWSPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY  407 (698)
T ss_pred             EEecCc-eeeecccccCCccccCcccCCCcc-eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence            998875 222222222345688899999865 4433221     1356677777776665432   23344667777777


Q ss_pred             EEEEEc-------CC---eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECC-CCCCcceE
Q 003842          652 YLAAAA-------EN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVG-SGSEGECV  716 (792)
Q Consensus       652 lla~s~-------dg---~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~-s~~~~~~i  716 (792)
                      |++-..       .|   .+.|+.++........-.-...|...+|.|.|+.+++.+.+    ++.+|.++ +......+
T Consensus       408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV  487 (698)
T KOG2314|consen  408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV  487 (698)
T ss_pred             EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence            765432       11   35566665543322222345678899999999987766544    79999988 44444555


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCC--cEEEEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 003842          717 HELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMSEN--KTMTLTAHEGLIAALAVSTETGYVASASHDK  786 (792)
Q Consensus       717 ~~~~~~~~~i~si~fspdg~~L~sgs~---dg~I~IwDl~~~--~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG  786 (792)
                      ..+..  ...+.+.|+|.|+++++++-   .|.+.+||+.-.  +.+....|. ..+.+.|.|.|+|+++++.-+
T Consensus       488 k~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  488 KELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             hhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehh
Confidence            55543  55788999999999888754   579999999843  333344443 367899999999999998643

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=1.5e-12  Score=141.30  Aligned_cols=238  Identities=17%  Similarity=0.210  Sum_probs=173.1

Q ss_pred             cCCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 003842          552 EHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG  630 (792)
Q Consensus       552 ~h~~~V~~i~fspdg~~L-asgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~  630 (792)
                      .+....+.|..+|||.|+ ++|.+.-.|++||+.+  ..++.-......|..+....|+-.-++.-..|.+|-+...-..
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan--LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~  126 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN--LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR  126 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEccc--ceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence            377888999999999974 6777888999999986  2233222333444444433332222333445777776554333


Q ss_pred             eeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 003842          631 SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS  709 (792)
Q Consensus       631 ~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s  709 (792)
                      .....+......++++.-..-+++++....|+-++++.|..+..+....+.+++|..++...+|++|+.+ .|.+||.++
T Consensus       127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~  206 (703)
T KOG2321|consen  127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD  206 (703)
T ss_pred             eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence            3333344455667777766778888888999999999999999988888999999999999999999988 999999987


Q ss_pred             CCCcceEEE---eecCC-----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC--CeEEEEEeCC--CC
Q 003842          710 GSEGECVHE---LSCNG-----NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG--LIAALAVSTE--TG  777 (792)
Q Consensus       710 ~~~~~~i~~---~~~~~-----~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~--~V~sl~fspd--g~  777 (792)
                      ......+..   +..+.     ..|+++.|+.+|-.+++|+.+|.|.|||++..+++....|..  +|..+.|.+.  ..
T Consensus       207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~  286 (703)
T KOG2321|consen  207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN  286 (703)
T ss_pred             hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence            643332221   11222     238999999999999999999999999999999997777754  6888888664  45


Q ss_pred             EEEEEeCCCcEEEeC
Q 003842          778 YVASASHDKFVKLWK  792 (792)
Q Consensus       778 ~LaSgs~DG~I~IWd  792 (792)
                      .|+++ +...++|||
T Consensus       287 ~v~S~-Dk~~~kiWd  300 (703)
T KOG2321|consen  287 KVVSM-DKRILKIWD  300 (703)
T ss_pred             eEEec-chHHhhhcc
Confidence            66655 456789997

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.50  E-value=8.2e-12  Score=141.27  Aligned_cols=231  Identities=19%  Similarity=0.207  Sum_probs=159.4

Q ss_pred             CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCC
Q 003842          533 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK  609 (792)
Q Consensus       533 Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D---g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~  609 (792)
                      ...|.++|.+.. ....+..+...+...+|+|||++|+.++.+   ..|++||+.++ .. ..+..+...+.+++|+|++
T Consensus       169 ~~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g-~~-~~~~~~~~~~~~~~~spDg  245 (417)
T TIGR02800       169 RYELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG-QR-EKVASFPGMNGAPAFSPDG  245 (417)
T ss_pred             cceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC-CE-EEeecCCCCccceEECCCC
Confidence            346888887644 345565677789999999999999887654   47999999873 22 3333455667789999999


Q ss_pred             CeEEEEEeCCC--cEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCe
Q 003842          610 DDLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPI  682 (792)
Q Consensus       610 ~~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~d-g--~I~i~D~~t~~~~~~l~~h~~~V  682 (792)
                      +.++++.+.++  .|++||+.++........  ......|++++.+++.++.. +  .|+++|+.+++.. .+..+...+
T Consensus       246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~  324 (417)
T TIGR02800       246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYN  324 (417)
T ss_pred             CEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence            98887776655  588999988765443322  23457899999988877653 2  6888898877644 333345667


Q ss_pred             EEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCC
Q 003842          683 DSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSEN  755 (792)
Q Consensus       683 ~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---~I~IwDl~~~  755 (792)
                      ..++|+|+|++|+.++.+    .|.+||+.++.    ...+.. ........|+|++++|+..+.++   .+++++....
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~----~~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~  399 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG----ERVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR  399 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceEEEEEeCCCCC----eEEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence            788999999988887654    68889987642    122221 12234568999999998887764   5667776655


Q ss_pred             cEEEEcccCCCeEEEEE
Q 003842          756 KTMTLTAHEGLIAALAV  772 (792)
Q Consensus       756 ~~~~~~~h~~~V~sl~f  772 (792)
                      ....+..+.+.+..++|
T Consensus       400 ~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       400 FRARLPLGNGDVREPAW  416 (417)
T ss_pred             eeeECCCCCCCcCCCCC
Confidence            44444444555555555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.50  E-value=9.8e-13  Score=135.25  Aligned_cols=250  Identities=17%  Similarity=0.272  Sum_probs=190.0

Q ss_pred             cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeEEec-cCCCCEEEEEECCCCCeEEEEeCCCc
Q 003842          500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKT  577 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl-~t~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~  577 (792)
                      +.+..+..++||.+.|++...-|...-+++.+.|.+++||-- +.+..-..+. .-..+++++.+.++...|++|-..|+
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt   91 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT   91 (404)
T ss_pred             cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence            445567789999999999999998889999999999999953 4444444333 34678999999999999999999999


Q ss_pred             EEEEeCCCC---CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE--eeCCeeEEEEecCCCEE
Q 003842          578 VRVWDADNP---GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRY  652 (792)
Q Consensus       578 V~IWdl~s~---~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~l  652 (792)
                      +.-+.+...   ....+.+..|...|..+.|+.... .+++++.|..+.---.+.+..+..  +......+.+.-.  +.
T Consensus        92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~  168 (404)
T KOG1409|consen   92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA  168 (404)
T ss_pred             EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence            998877642   345567778999999999987644 555888787665544444444332  2222222222222  55


Q ss_pred             EEEEcCCeEEEEEC--CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEE
Q 003842          653 LAAAAENVVSILDA--ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC  729 (792)
Q Consensus       653 la~s~dg~I~i~D~--~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si  729 (792)
                      ++|...|.|.+..+  ....++.++.+|...+.+++|.+...+|.+|..| .|.+||+.-.  .....++.+|...+..+
T Consensus       169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~--~g~~~el~gh~~kV~~l  246 (404)
T KOG1409|consen  169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR--KGTAYELQGHNDKVQAL  246 (404)
T ss_pred             EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC--cceeeeeccchhhhhhh
Confidence            55666666665544  4457888999999999999999999999999999 9999999643  24566777888889988


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCC
Q 003842          730 VFHPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       730 ~fspdg~~L~sgs~dg~I~IwDl~~  754 (792)
                      ..-+.-+.+++++.||.|.+||++.
T Consensus       247 ~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  247 SYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hhhhhheeeeeccCCCeEEEEeccc
Confidence            8888888999999999999999864

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.49  E-value=2e-12  Score=135.19  Aligned_cols=235  Identities=16%  Similarity=0.175  Sum_probs=179.0

Q ss_pred             CCCCEEEEEECCCCC--eEEEEeCCCcEEEEeCCCCCce-----eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEE
Q 003842          553 HSSLITDVRFSPSMP--RLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW  625 (792)
Q Consensus       553 h~~~V~~i~fspdg~--~Lasgs~Dg~V~IWdl~s~~~~-----i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iw  625 (792)
                      ....|+.++|..++.  .|+..+.|..+..+.+...+..     +.........|..++...   ..|++|..+|.+.+|
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVR  130 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEEEE
Confidence            445677788876554  4444446666777776653211     123444566777777652   245588899999999


Q ss_pred             EcCCCe-----eEEEe-eCCeeEEEEecCCCEEEE-EEcC--CeEEEEECCCCeEEEEecCC---------CCCeEEEEE
Q 003842          626 SINNGS-----CTRVF-KGGTAQMRFQPHLGRYLA-AAAE--NVVSILDAETQACRLSLQGH---------TKPIDSVCW  687 (792)
Q Consensus       626 dl~~~~-----~~~~~-~~~~~~v~~sp~~~~lla-~s~d--g~I~i~D~~t~~~~~~l~~h---------~~~V~sv~~  687 (792)
                      .++.+.     .+..- -.+...+.-++...++++ |+..  ..+.|||++..+.++.-+.-         .-+++++.|
T Consensus       131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F  210 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF  210 (412)
T ss_pred             eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence            998443     33222 234555666777777776 6667  79999999998777654432         235778889


Q ss_pred             cCC--CCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcc
Q 003842          688 DPS--GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTA  762 (792)
Q Consensus       688 spd--g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~~~~  762 (792)
                      .+.  ...|++++.- .|++||.+..+  +++..+......++++...|++++|++|...+.+..||++.++..  .+.+
T Consensus       211 l~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg  288 (412)
T KOG3881|consen  211 LEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG  288 (412)
T ss_pred             cCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence            887  7889999888 99999998654  677788888999999999999999999999999999999999988  4778


Q ss_pred             cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          763 HEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       763 h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ..+.|++|..+|...+||+||-|..|||+|
T Consensus       289 ~tGsirsih~hp~~~~las~GLDRyvRIhD  318 (412)
T KOG3881|consen  289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD  318 (412)
T ss_pred             ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence            999999999999999999999999999997

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.7e-11  Score=139.48  Aligned_cols=232  Identities=15%  Similarity=0.090  Sum_probs=160.9

Q ss_pred             eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCe
Q 003842          535 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD  611 (792)
Q Consensus       535 ~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D---g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~  611 (792)
                      .|.++|.+.+. ...+..+...+...+|+|||+.|+..+.+   ..|++||+.++ . ...+....+.+....|+|+|+.
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g-~-~~~l~~~~g~~~~~~~SpDG~~  256 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG-R-REQITNFEGLNGAPAWSPDGSK  256 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC-C-EEEccCCCCCcCCeEECCCCCE
Confidence            47778877544 45565677789999999999998877644   35899999863 2 2333334455667999999998


Q ss_pred             EEEEEeCCC--cEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEecCCCCCeEE
Q 003842          612 LICSCDGDG--EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACRLSLQGHTKPIDS  684 (792)
Q Consensus       612 ll~sgs~Dg--~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~d---g~I~i~D~~t~~~~~~l~~h~~~V~s  684 (792)
                      ++++...+|  .|++||+.+++......  .......|+|+++.++..+..   ..|+++|+.+++...... .......
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~  335 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR  335 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence            887776666  58888999877654332  234557899999988877652   368888988776443222 2233445


Q ss_pred             EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcE
Q 003842          685 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKT  757 (792)
Q Consensus       685 v~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d---g~I~IwDl~~~~~  757 (792)
                      ..|+|+|++|+..+.+    .|.+||+.++.. ..   +.. ........|+|+|++|+..+.+   ..|+++++.....
T Consensus       336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~---lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~  410 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RI---LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR  410 (430)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EE---ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence            7899999998877643    588999987632 22   221 1122356899999999887765   3688888876665


Q ss_pred             EEEcccCCCeEEEEEeCC
Q 003842          758 MTLTAHEGLIAALAVSTE  775 (792)
Q Consensus       758 ~~~~~h~~~V~sl~fspd  775 (792)
                      ..+..+.+.+...+|+|-
T Consensus       411 ~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        411 LPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             EECcCCCCCcCCCccCCC
Confidence            556556677788888763

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1.2e-11  Score=140.84  Aligned_cols=201  Identities=16%  Similarity=0.218  Sum_probs=146.0

Q ss_pred             cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeEEE--eeCCeeEEEEecCCCEE
Q 003842          577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRY  652 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~--Dg~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~l  652 (792)
                      .|.+||.+  +...+.+..+...+.+.+|+||++.++++...  +..|++||+.+++....  +.+......|+|+++.+
T Consensus       183 ~l~~~d~d--g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        183 RLAIMDQD--GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             EEEEECCC--CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence            68888875  44556677788899999999999887766543  46899999998865433  34556678999999988


Q ss_pred             EEEE-cCC--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCc
Q 003842          653 LAAA-AEN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK  725 (792)
Q Consensus       653 la~s-~dg--~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~  725 (792)
                      ++.. .++  .|++||++++... .+..+.....+.+|+|||++|+..+..    .|++||+..+.    ...+......
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~~~~~  335 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRISFGGGR  335 (435)
T ss_pred             EEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEeecCCCc
Confidence            7554 344  5888899887654 455566667789999999988877643    68888986542    2233333445


Q ss_pred             eEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003842          726 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD  785 (792)
Q Consensus       726 i~si~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~D  785 (792)
                      +....|+|+|++|+....++   .|.+||+.++....+. ....+..+.|+|||++|+..+.+
T Consensus       336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence            66789999999998876542   6889998766544333 23357789999999998776553

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=4.8e-13  Score=142.86  Aligned_cols=278  Identities=13%  Similarity=0.186  Sum_probs=209.4

Q ss_pred             ceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeee
Q 003842          431 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS  507 (792)
Q Consensus       431 ~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~  507 (792)
                      ..+.|...|+.+++++++   .+|||..+..+.                                             ..
T Consensus       146 ntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l---------------------------------------------~f  180 (559)
T KOG1334|consen  146 NTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKL---------------------------------------------SF  180 (559)
T ss_pred             ceeeecccCceeeccCccceEEeehhhccCccc---------------------------------------------cc
Confidence            367888899988888777   558887665321                                             12


Q ss_pred             eecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCce--eEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEE
Q 003842          508 VRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD-TLKS--KTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVW  581 (792)
Q Consensus       508 l~~H~~~V~~lafsp--dg~~Lasgs~Dg~I~vWdl~-t~~~--~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IW  581 (792)
                      ..+|...|.-..|-|  +...|++++.||.|++=.+. ++.+  .+.+..|.+.|..++.-|+.. .|++++.|+.|.-+
T Consensus       181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~  260 (559)
T KOG1334|consen  181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHI  260 (559)
T ss_pred             ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeee
Confidence            346777777777877  44689999999999988764 3333  345667999999999999655 69999999999999


Q ss_pred             eCCCCC--ceeEEecccCC---CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE------EE---------eeCCee
Q 003842          582 DADNPG--YSLRTFMGHSA---SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT------RV---------FKGGTA  641 (792)
Q Consensus       582 dl~s~~--~~i~~~~~h~~---~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~------~~---------~~~~~~  641 (792)
                      |++...  ..+.....+..   ...+|+..|...+.+++++.|-.+++||.+.-...      ..         ....++
T Consensus       261 Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT  340 (559)
T KOG1334|consen  261 DLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT  340 (559)
T ss_pred             eeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce
Confidence            998632  11222223333   57889999999999999999999999998753211      11         234678


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCCC------------eEEE-EecCCCC--CeEEEE-EcCCCCEEEEEeCC-eEEE
Q 003842          642 QMRFQPHLGRYLAAAAENVVSILDAETQ------------ACRL-SLQGHTK--PIDSVC-WDPSGELLASVSED-SVRV  704 (792)
Q Consensus       642 ~v~~sp~~~~lla~s~dg~I~i~D~~t~------------~~~~-~l~~h~~--~V~sv~-~spdg~~Las~s~d-~I~I  704 (792)
                      +++|+.+++.+++...|-.|++|.-..+            ..+. .+++|..  .|.++- |-|..+|+++|++- .|.|
T Consensus       341 gl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFi  420 (559)
T KOG1334|consen  341 GLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFI  420 (559)
T ss_pred             eEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEE
Confidence            8999999999999999999999954322            1222 3677754  366665 45778899999988 9999


Q ss_pred             EECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003842          705 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       705 wDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~  756 (792)
                      |+-.++   +.+..+.+....|.|+.-+|.-..||+++-|..|+||...+.+
T Consensus       421 W~K~t~---eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  421 WDKKTG---EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             Eecchh---HHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence            998776   6666777777789999999999999999999999999874433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=2.2e-11  Score=138.67  Aligned_cols=231  Identities=15%  Similarity=0.138  Sum_probs=156.7

Q ss_pred             eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC-C--cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCe
Q 003842          535 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-K--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD  611 (792)
Q Consensus       535 ~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D-g--~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~  611 (792)
                      .|.++|.+... ...+..+...+.+..|+|||+.|+..+.+ +  .|++||+.++ .. ..+....+......|+||++.
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg-~~-~~lt~~~g~~~~~~wSPDG~~  275 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ-VR-EKVTSFPGINGAPRFSPDGKK  275 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC-Ce-EEecCCCCCcCCeeECCCCCE
Confidence            67777876544 34556667789999999999988876543 3  5888898763 32 223323334457899999998


Q ss_pred             EEEEEeCCCc--EEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEc-C--CeEEEEECCCCeEEEEecCCCCCeEE
Q 003842          612 LICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPIDS  684 (792)
Q Consensus       612 ll~sgs~Dg~--I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~-d--g~I~i~D~~t~~~~~~l~~h~~~V~s  684 (792)
                      ++++.+.+|.  |++||+.+++.......  ......|+|++.+++..+. +  ..|+++|+.+++..... ........
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~  354 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG  354 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence            8888877775  78889888765543332  3456889999998887765 2  36788888877654322 12223445


Q ss_pred             EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcE
Q 003842          685 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKT  757 (792)
Q Consensus       685 v~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---~I~IwDl~~~~~  757 (792)
                      .+|+|||++|+..+.+    .|.++|+.++..    ..+... .......|+|+|++|+....++   .|++++......
T Consensus       355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~----~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~  429 (448)
T PRK04792        355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM----QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK  429 (448)
T ss_pred             eeECCCCCEEEEEEecCCceEEEEEECCCCCe----EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence            7899999988876643    566778776532    122211 1223458999999988776553   488888866655


Q ss_pred             EEEcccCCCeEEEEEeC
Q 003842          758 MTLTAHEGLIAALAVST  774 (792)
Q Consensus       758 ~~~~~h~~~V~sl~fsp  774 (792)
                      ..+..+.+.+...+|+|
T Consensus       430 ~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        430 ARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             EECcCCCCCcCCCccCC
Confidence            56666667788888887

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.45  E-value=1.9e-13  Score=145.06  Aligned_cols=228  Identities=14%  Similarity=0.181  Sum_probs=183.9

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE
Q 003842          554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT  633 (792)
Q Consensus       554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~  633 (792)
                      ...-..+.|+.+|++|+.|+..|.|..+|..+ +.....+. -...|.++.|..+.. +|++ .-...++|||-. |..+
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t-~~L~~Ei~-v~Etv~Dv~~LHneq-~~AV-AQK~y~yvYD~~-GtEl  203 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT-KKLHFEIN-VMETVRDVTFLHNEQ-FFAV-AQKKYVYVYDNN-GTEL  203 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeeccc-ceeeeeee-hhhhhhhhhhhcchH-HHHh-hhhceEEEecCC-CcEE
Confidence            44567889999999999999999999999998 44444443 456788999987744 4534 357889999965 4445


Q ss_pred             EEee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003842          634 RVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG  710 (792)
Q Consensus       634 ~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~  710 (792)
                      ..++  ..+..+.|.|..-.|++++..|.+..-|+.+|+.+..+....+.+..++-+|-+..+-+|..+ +|.+|.-.+.
T Consensus       204 HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk  283 (545)
T KOG1272|consen  204 HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK  283 (545)
T ss_pred             eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence            4444  356778899997778888889999999999999999998888999999999998889888888 9999998765


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003842          711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK  789 (792)
Q Consensus       711 ~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~  789 (792)
                         +++..+-+|.++|.++++.++|.|+++.+.|..|+|||++....+ ++.. ......++||..|  +++++....|.
T Consensus       284 ---ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~  357 (545)
T KOG1272|consen  284 ---EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQ  357 (545)
T ss_pred             ---chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeee
Confidence               677778899999999999999999999999999999999987755 3333 5567788888766  44455666799


Q ss_pred             EeC
Q 003842          790 LWK  792 (792)
Q Consensus       790 IWd  792 (792)
                      ||.
T Consensus       358 iw~  360 (545)
T KOG1272|consen  358 IWK  360 (545)
T ss_pred             eeh
Confidence            994

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.44  E-value=1.9e-10  Score=124.70  Aligned_cols=256  Identities=10%  Similarity=0.075  Sum_probs=168.5

Q ss_pred             CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC----------CCcEEEEeCCCCCceeEEeccc-------
Q 003842          534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMGH-------  596 (792)
Q Consensus       534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~----------Dg~V~IWdl~s~~~~i~~~~~h-------  596 (792)
                      +.|.|.|.++++.+..+.....+- .+ ++||++.|++++.          +..|.|||+.+ .+.+..+.-.       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-HLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-CcEEeEEccCCCchhhc
Confidence            899999999999999887544333 24 9999998877765          78899999998 5566555432       


Q ss_pred             CCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeE-EE
Q 003842          597 SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-QAC-RL  673 (792)
Q Consensus       597 ~~~V~sl~fspd~~~ll~sgs~-Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t-~~~-~~  673 (792)
                      ......++++|||+.++++--. +..|.++|+.+++.+..+.-+.....+-.....+++.|.||......+.+ ++. ..
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence            1233478999999888766534 89999999999999988775443333322223333444555444433222 221 11


Q ss_pred             E---ecCCCCCeEE-EEEcC-CCCEEEEEeCCeEEEEECCCCCC--cceEEEeec-------CCCceEEEEEeCCCCEEE
Q 003842          674 S---LQGHTKPIDS-VCWDP-SGELLASVSEDSVRVWTVGSGSE--GECVHELSC-------NGNKFHSCVFHPTYPSLL  739 (792)
Q Consensus       674 ~---l~~h~~~V~s-v~~sp-dg~~Las~s~d~I~IwDl~s~~~--~~~i~~~~~-------~~~~i~si~fspdg~~L~  739 (792)
                      .   +.....++.. -.|.+ +|++++...++.|.+.|+.....  ...+..+..       ....+.-++++++++.++
T Consensus       184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             eeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence            1   1110011100 03445 88888888889999999754321  112222111       122344599999999998


Q ss_pred             EEEc----------CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-CCCcEEEeC
Q 003842          740 VIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK  792 (792)
Q Consensus       740 sgs~----------dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~-~LaSgs-~DG~I~IWd  792 (792)
                      +...          .+.|.++|..+++.+....-...+..++|++|++ +|++.+ .++.|.|+|
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD  328 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD  328 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence            8532          2489999999999996665667899999999999 877666 478888875

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.44  E-value=2.4e-12  Score=128.20  Aligned_cols=213  Identities=18%  Similarity=0.214  Sum_probs=155.7

Q ss_pred             CCcceeccCCcceeeeeeee-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE--------------Eec---
Q 003842          490 GGRGMDVSQGFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--------------NLE---  551 (792)
Q Consensus       490 ~~~~~d~~~~~~~~~~~~l~-~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~--------------~l~---  551 (792)
                      .+.+|.+....   .+..++ .|...|+.+..-|+ ..|.+-+.|+.+.+|++.-...+.              .+.   
T Consensus        36 ~V~~w~lqt~r---~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~  111 (323)
T KOG0322|consen   36 IVKMWVLQTER---DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKP  111 (323)
T ss_pred             eEEEEEeecCc---cchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCC
Confidence            34455554432   334455 56777888888776 467777788888888875421110              000   


Q ss_pred             ------------------------------------cCCCCEEEEEECC-CCC--eEEEEeCCCcEEEEeCCCCCc----
Q 003842          552 ------------------------------------EHSSLITDVRFSP-SMP--RLATSSFDKTVRVWDADNPGY----  588 (792)
Q Consensus       552 ------------------------------------~h~~~V~~i~fsp-dg~--~Lasgs~Dg~V~IWdl~s~~~----  588 (792)
                                                          ...+.+.|..|.. +++  +|++|.++|.|.+||+.++.+    
T Consensus       112 k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~  191 (323)
T KOG0322|consen  112 KNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQL  191 (323)
T ss_pred             CcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecc
Confidence                                                0234456666433 233  467788899999999998422    


Q ss_pred             -----eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC--e-----eEEEeeCCeeEEEEecCCCEEEEEE
Q 003842          589 -----SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--S-----CTRVFKGGTAQMRFQPHLGRYLAAA  656 (792)
Q Consensus       589 -----~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~--~-----~~~~~~~~~~~v~~sp~~~~lla~s  656 (792)
                           .+..+..|..+|.++.|.+.-+.=+ +|+.+..+..|++...  .     .+..-..++..+++.||++.+++++
T Consensus       192 ~~~~kv~~~~ash~qpvlsldyas~~~rGi-sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG  270 (323)
T KOG0322|consen  192 PQSSKVESPNASHKQPVLSLDYASSCDRGI-SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG  270 (323)
T ss_pred             ccccccccchhhccCcceeeeechhhcCCc-CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc
Confidence                 2334457999999999986533333 7777888899988653  2     2223345778899999999999999


Q ss_pred             cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 003842          657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV  707 (792)
Q Consensus       657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl  707 (792)
                      .|+.|+||..++..++..++-|...|.+++|+|+..++|+++.| .|.+|++
T Consensus       271 WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  271 WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999999999999999999999999999 9999986

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.3e-11  Score=127.67  Aligned_cols=227  Identities=18%  Similarity=0.241  Sum_probs=142.9

Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~-Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      .-.+| ..|+++.|.+||..|++++. |..|.|||.+++..+.......+.++-+.|+||+.+|+++..|+..++|....
T Consensus       191 ~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q  269 (445)
T KOG2139|consen  191 QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ  269 (445)
T ss_pred             eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcc
Confidence            34466 78999999999999999885 57899999999988777666678899999999999999999999999997665


Q ss_pred             CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003842          586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD  665 (792)
Q Consensus       586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D  665 (792)
                      .....+- .-..+.|...+|+|+|..++++++..-.  +|.+.....-..+..               .++....+.+-|
T Consensus       270 ~wt~erw-~lgsgrvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~---------------~~~~k~~lliaD  331 (445)
T KOG2139|consen  270 SWTKERW-ILGSGRVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLR---------------PQSIKRVLLIAD  331 (445)
T ss_pred             cceecce-eccCCceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccC---------------cccceeeeeecc
Confidence            3333333 3345599999999999999999865544  343321110000000               111112222333


Q ss_pred             CCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeecCCCceEEEEEeC---
Q 003842          666 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP---  733 (792)
Q Consensus       666 ~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---------~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp---  733 (792)
                      +..-....--.--.+++.+++|+|.|+||++.-.+         .|.+||.+..........-...+.....++|+|   
T Consensus       332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n  411 (445)
T KOG2139|consen  332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKN  411 (445)
T ss_pred             chhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeeccc
Confidence            32111000001123678899999999999987654         256677654322222111111122244455555   


Q ss_pred             CCCEEEEEEcCCeEEEEEC
Q 003842          734 TYPSLLVIGCYQSLELWNM  752 (792)
Q Consensus       734 dg~~L~sgs~dg~I~IwDl  752 (792)
                      ++..|.++=+.|.|.-|++
T Consensus       412 ~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  412 EGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             CCcEEEEEeccCceEeeee
Confidence            4556666666677776665

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.42  E-value=6.3e-10  Score=116.41  Aligned_cols=265  Identities=16%  Similarity=0.158  Sum_probs=187.0

Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCC--CceeE--EeccCCCCEEEEEECCCCCeEEEEeC-CCcEEE
Q 003842          509 RASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDT--LKSKT--NLEEHSSLITDVRFSPSMPRLATSSF-DKTVRV  580 (792)
Q Consensus       509 ~~H~~~V~~lafspdg~~Lasgs~---Dg~I~vWdl~t--~~~~~--~l~~h~~~V~~i~fspdg~~Lasgs~-Dg~V~I  580 (792)
                      -.+.+.++-|+|++++++|.++..   +|.|..|.++.  |+...  ........-+.|++++++++|+++.+ -|.|.+
T Consensus        36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v  115 (346)
T COG2706          36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV  115 (346)
T ss_pred             ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence            356677999999999999998865   47788887764  44322  12222334488999999999998876 578999


Q ss_pred             EeCCCCCceeE--EecccCCC----------eEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----e--CCeeE
Q 003842          581 WDADNPGYSLR--TFMGHSAS----------VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----K--GGTAQ  642 (792)
Q Consensus       581 Wdl~s~~~~i~--~~~~h~~~----------V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~--~~~~~  642 (792)
                      +-+...+....  ....|.+.          +.+..|.|++++++++.-.--.|.+|++..+++....    +  .+...
T Consensus       116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH  195 (346)
T COG2706         116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH  195 (346)
T ss_pred             EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence            99976554322  22335544          8899999999877766555678999999987765432    2  35677


Q ss_pred             EEEecCCCEEEEEEc-CCeEEEEECCCC-eEEEEecC---------CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCC
Q 003842          643 MRFQPHLGRYLAAAA-ENVVSILDAETQ-ACRLSLQG---------HTKPIDSVCWDPSGELLASVSED--SVRVWTVGS  709 (792)
Q Consensus       643 v~~sp~~~~lla~s~-dg~I~i~D~~t~-~~~~~l~~---------h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s  709 (792)
                      +.|+|+++..++.++ +++|.+|..+.. ..+..+..         ...+.-.|.+++||++|.++...  .|.+|.+..
T Consensus       196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~  275 (346)
T COG2706         196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP  275 (346)
T ss_pred             EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            999999999888777 899999988773 22222211         23456788999999999999876  888998865


Q ss_pred             CC-CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC--CCCcEEEEc--ccCCCeEEEEEe
Q 003842          710 GS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNM--SENKTMTLT--AHEGLIAALAVS  773 (792)
Q Consensus       710 ~~-~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg-~I~IwDl--~~~~~~~~~--~h~~~V~sl~fs  773 (792)
                      .. ....+.....++...+.+.|++.+++|+++..++ .|.+|..  .++++..+.  .......||.|.
T Consensus       276 ~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         276 DGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            42 2344455555666688999999999999998875 6777755  455554222  334445566663

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.42  E-value=5.7e-12  Score=145.74  Aligned_cols=265  Identities=16%  Similarity=0.201  Sum_probs=184.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec------cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~------~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      -+++.+..+-.  +||++|. .-.|.+||+..+..+..+.      .|...-.-   .-.+.+++++..-+.+.+-+...
T Consensus         7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~---~l~~~~~v~~~~~~~v~~~~~~~   80 (967)
T KOG0974|consen    7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKV---KLLSGKIVTCAKSDEVYVKEASN   80 (967)
T ss_pred             cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccc---eeccceEEEEEeecceeecchhh
Confidence            34455555554  4666654 4579999999876655443      33000000   01233556655444444433322


Q ss_pred             CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeE-------EEEecCCCEEEEEEcC
Q 003842          586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-------MRFQPHLGRYLAAAAE  658 (792)
Q Consensus       586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~-------v~~sp~~~~lla~s~d  658 (792)
                        .....+   ...|..-.+..+.. .++.+..+..+.+||...+...........+       +-++++.-++++++.-
T Consensus        81 --~~~~~~---s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~  154 (967)
T KOG0974|consen   81 --QIIERF---SDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF  154 (967)
T ss_pred             --hhhhhc---cccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc
Confidence              112222   23333334444433 4556777899999999988777665443322       2345555567778889


Q ss_pred             CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003842          659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~  737 (792)
                      +.|.+|+....+.-..+.+|++.|.++.|+.||++++++++| .+++|++.+.+...  ....+|...++.|+|.|+  +
T Consensus       155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~  230 (967)
T KOG0974|consen  155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--R  230 (967)
T ss_pred             ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--e
Confidence            999999988544444788999999999999999999999999 99999999875433  355678999999999999  8


Q ss_pred             EEEEEcCCeEEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          738 LLVIGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       738 L~sgs~dg~I~IwDl~~~~~~~~~~h~-~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |++++.|-+.++|+........+..|. ..|+.++..++...++|++.||.|++|+
T Consensus       231 i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  231 IITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             eEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence            999999999999987766655666665 4799999999999999999999999996

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.42  E-value=1.4e-11  Score=123.99  Aligned_cols=108  Identities=23%  Similarity=0.477  Sum_probs=87.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe--CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEE
Q 003842          678 HTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWN  751 (792)
Q Consensus       678 h~~~V~sv~~spdg~~Las~s--~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d---g~I~IwD  751 (792)
                      ..++|.+++|+|+|+.|+++.  .+ .|.+||++    .+.+..+.  ...+..+.|+|+|++|++++.+   |.|.+||
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd  131 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD  131 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc----ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence            345799999999999877654  33 89999996    24555543  4677889999999999998754   5799999


Q ss_pred             CCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC------CCcEEEeC
Q 003842          752 MSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKFVKLWK  792 (792)
Q Consensus       752 l~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~------DG~I~IWd  792 (792)
                      +++.+.+....|.. ++.++|+|||++|+++..      |+.++||+
T Consensus       132 ~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~  177 (194)
T PF08662_consen  132 VRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWS  177 (194)
T ss_pred             CCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence            99888886666654 789999999999999874      78889985

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=1.4e-10  Score=126.47  Aligned_cols=328  Identities=12%  Similarity=0.185  Sum_probs=201.4

Q ss_pred             ceEEEEeCCCeeeecCCC--eeEeCCCcchhhcccccc----cCCCCCCceeeeccCCCCC---CCCCCCcceeccCCcc
Q 003842          431 PLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLV----EDGSLDDNVESFLSHDDTD---PRDAGGRGMDVSQGFS  501 (792)
Q Consensus       431 ~~l~~s~Dg~~~~ss~s~--~lWD~~tg~~~~~~~~~~----~~g~~d~~v~~~l~~d~~~---~~d~~~~~~d~~~~~~  501 (792)
                      .+.++|++|+..+.+...  .|+++.+++.+-++....    .....+.....|-.....+   .......+|++..+. 
T Consensus        38 ~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~-  116 (566)
T KOG2315|consen   38 NVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGV-  116 (566)
T ss_pred             eeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccce-
Confidence            367888888887665444  677777764322222110    0011111121221111011   112233455555522 


Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC--eEEE-----EeC
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLAT-----SSF  574 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~--~Las-----gs~  574 (792)
                        ....+......-+++.|+.|..+.|-- ..+.|.+|++.+.+.+. -.-|...|+.+.++|.+.  .||+     .+.
T Consensus       117 --~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGa  192 (566)
T KOG2315|consen  117 --QRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGA  192 (566)
T ss_pred             --ehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCC
Confidence              222232222223799999998654432 35689999998743322 234678899999999743  3332     244


Q ss_pred             CCcEEEEeCCCCC--c--eeEEecccCCCeEEEEEcCCCCeEEEEEeC--C---------CcEEEEEcCCCeeEEEe--e
Q 003842          575 DKTVRVWDADNPG--Y--SLRTFMGHSASVMSLDFHPNKDDLICSCDG--D---------GEIRYWSINNGSCTRVF--K  637 (792)
Q Consensus       575 Dg~V~IWdl~s~~--~--~i~~~~~h~~~V~sl~fspd~~~ll~sgs~--D---------g~I~iwdl~~~~~~~~~--~  637 (792)
                      -+.|+||.+...+  .  ..++|.  ...-..+.|++-+.-||+..+.  |         .+++++++....+...+  +
T Consensus       193 Pa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~  270 (566)
T KOG2315|consen  193 PASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE  270 (566)
T ss_pred             CcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC
Confidence            5679999887321  1  112222  2223367788877766654433  3         46888888855555444  5


Q ss_pred             CCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCC
Q 003842          638 GGTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGS  711 (792)
Q Consensus       638 ~~~~~v~~sp~~~~lla~s~--dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~  711 (792)
                      +++.++.|++++..++++..  -..+.|||++ +++++.+.  +++-+++-|+|.|++|+.++-+    .|.|||+.+. 
T Consensus       271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-  346 (566)
T KOG2315|consen  271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-  346 (566)
T ss_pred             CCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccch-
Confidence            78999999999988766544  6799999986 45555553  4677889999999999988866    6999999764 


Q ss_pred             CcceEEEeecCCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEEEEcccCCCeEEEEEeC
Q 003842          712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTMTLTAHEGLIAALAVST  774 (792)
Q Consensus       712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~------dg~I~IwDl~~~~~~~~~~h~~~V~sl~fsp  774 (792)
                        +++..+..  ...+.+.|+|||.+|+++++      |+.++||++....... .........++|-|
T Consensus       347 --K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~-~~f~sEL~qv~W~P  410 (566)
T KOG2315|consen  347 --KLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE-KMFKSELLQVEWRP  410 (566)
T ss_pred             --hhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh-hhhhHhHhheeeee
Confidence              56665544  34567899999999999987      5789999987654331 11122566777765

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.5e-10  Score=131.03  Aligned_cols=236  Identities=16%  Similarity=0.148  Sum_probs=156.7

Q ss_pred             CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCe--E-EEEeCCC--cEEEEeCCCCCceeEEecccCCCeEEEEEcCC
Q 003842          534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR--L-ATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN  608 (792)
Q Consensus       534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~--L-asgs~Dg--~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd  608 (792)
                      +.|.+.|.+.+.. ..+......+.+-+|+|||+.  + ++...+|  .|++.++..+ . ...+....+......|+||
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g-~-~~~lt~~~g~~~~p~wSPD  241 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP-A-GKKILALQGNQLMPTFSPR  241 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC-C-ceEeecCCCCccceEECCC
Confidence            4677778765543 445555666778899999975  2 3444444  4777788753 2 2333334555667899999


Q ss_pred             CCeEEEEEeCCC----cEEEEEcCCC---eeEEEeeC---CeeEEEEecCCCEEEEEEc-CC--eEEEEECCC-CeEEEE
Q 003842          609 KDDLICSCDGDG----EIRYWSINNG---SCTRVFKG---GTAQMRFQPHLGRYLAAAA-EN--VVSILDAET-QACRLS  674 (792)
Q Consensus       609 ~~~ll~sgs~Dg----~I~iwdl~~~---~~~~~~~~---~~~~v~~sp~~~~lla~s~-dg--~I~i~D~~t-~~~~~~  674 (792)
                      |+.++++...+|    .+.+|++..+   ........   .....+|+|++..|+..+. +|  .|+++++.. +.....
T Consensus       242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~  321 (428)
T PRK01029        242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL  321 (428)
T ss_pred             CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence            998888775544    3444776653   33333322   2356899999998887764 55  455555542 233344


Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeE
Q 003842          675 LQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSL  747 (792)
Q Consensus       675 l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d---g~I  747 (792)
                      +..+...+...+|+|||++|+..+.+    .|++||+.++..    ..+......+....|+|||++|+....+   ..|
T Consensus       322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L  397 (428)
T PRK01029        322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL  397 (428)
T ss_pred             eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence            44455667889999999988876543    699999987632    2222233456778999999988876543   479


Q ss_pred             EEEECCCCcEEEEcccCCCeEEEEEeCCC
Q 003842          748 ELWNMSENKTMTLTAHEGLIAALAVSTET  776 (792)
Q Consensus       748 ~IwDl~~~~~~~~~~h~~~V~sl~fspdg  776 (792)
                      ++||+.+++...+....+.+...+|+|-.
T Consensus       398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        398 YLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             EEEECCCCCEEEeecCCCcccCceecCCC
Confidence            99999998877666666677888898753

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.40  E-value=8.3e-11  Score=133.04  Aligned_cols=202  Identities=16%  Similarity=0.235  Sum_probs=145.0

Q ss_pred             cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCeeEEE--eeCCeeEEEEecCCCEE
Q 003842          577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRY  652 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D--g~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~l  652 (792)
                      .|.++|.+.  ...+.+..+...+.+.+|+|+++.++++...+  ..|++||+.+++....  +.+....++|+|+++.+
T Consensus       171 ~l~~~d~~g--~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       171 ELQVADYDG--ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             eEEEEcCCC--CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence            577777753  33455666777899999999999887665443  5799999998865433  33455678999999988


Q ss_pred             EEEEc-C--CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCc
Q 003842          653 LAAAA-E--NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK  725 (792)
Q Consensus       653 la~s~-d--g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~  725 (792)
                      ++... +  ..|++||+.++.... +..+........|++||++|+.++..    .|++||+.++.    ...+..+...
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~~  323 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGGY  323 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCCC
Confidence            76543 3  369999998875433 33454555678999999988776643    58888887542    2333444556


Q ss_pred             eEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 003842          726 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK  786 (792)
Q Consensus       726 i~si~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG  786 (792)
                      +..+.|+|++++|+.++.++   .|++||+.++....+... .......|+||+++|+.++.++
T Consensus       324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            77889999999999988876   899999988765544433 2345678999999888877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=9.4e-11  Score=133.59  Aligned_cols=219  Identities=19%  Similarity=0.240  Sum_probs=146.2

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEE-EeCCCc--EE
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKT--VR  579 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~D---g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Las-gs~Dg~--V~  579 (792)
                      +.+..+...+.+..|+|||++|+..+.+   ..|++||+.+++... +..........+|+|||+.|+. .+.+|.  |+
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy  289 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY  289 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence            3445566788899999999999887543   258999998876533 3322334457899999997765 456665  77


Q ss_pred             EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc--EEEEEcCCCeeEEEe-eC-CeeEEEEecCCCEEEEE
Q 003842          580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVF-KG-GTAQMRFQPHLGRYLAA  655 (792)
Q Consensus       580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~--I~iwdl~~~~~~~~~-~~-~~~~v~~sp~~~~lla~  655 (792)
                      +||+++ + ....+..+...+...+|+||++.++++...++.  |+++|+.+++..+.. .+ ......|+|++++++..
T Consensus       290 ~~dl~t-g-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~  367 (448)
T PRK04792        290 VVDIAT-K-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMV  367 (448)
T ss_pred             EEECCC-C-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEE
Confidence            778775 3 345555566667789999999988877765554  666788777655432 22 22346899999998877


Q ss_pred             EcC-C--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEE
Q 003842          656 AAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHS  728 (792)
Q Consensus       656 s~d-g--~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~s  728 (792)
                      +.+ +  .|.++|+.+++...... . .......|+|||++|+..+.+    .++++++. +   .....+......+..
T Consensus       368 ~~~~g~~~I~~~dl~~g~~~~lt~-~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G---~~~~~l~~~~g~~~~  441 (448)
T PRK04792        368 NRTNGKFNIARQDLETGAMQVLTS-T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G---RFKARLPAGQGEVKS  441 (448)
T ss_pred             EecCCceEEEEEECCCCCeEEccC-C-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-C---CceEECcCCCCCcCC
Confidence            653 3  56778888876543222 2 122345899999988776543    47777763 2   333444444455667


Q ss_pred             EEEeC
Q 003842          729 CVFHP  733 (792)
Q Consensus       729 i~fsp  733 (792)
                      .+|+|
T Consensus       442 p~Wsp  446 (448)
T PRK04792        442 PAWSP  446 (448)
T ss_pred             CccCC
Confidence            77776

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=1.3e-10  Score=132.22  Aligned_cols=220  Identities=19%  Similarity=0.213  Sum_probs=149.8

Q ss_pred             eeeeecCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEE-EeCCC--cE
Q 003842          505 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDK--TV  578 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafspdg~~Lasgs~D---g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Las-gs~Dg--~V  578 (792)
                      ...+..+...+...+|+|||+.|+..+.+   ..|++||+.+++... +....+.+...+|+|||+.|+. .+.+|  .|
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I  269 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI  269 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence            34566677889999999999999887644   369999999886543 3333445667899999998874 44455  58


Q ss_pred             EEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC--cEEEEEcCCCeeEEEee-C-CeeEEEEecCCCEEEE
Q 003842          579 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFK-G-GTAQMRFQPHLGRYLA  654 (792)
Q Consensus       579 ~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg--~I~iwdl~~~~~~~~~~-~-~~~~v~~sp~~~~lla  654 (792)
                      ++||+.+ + ....+..+........|+|+++.++++...+|  .|++||+.+++..+... + ......|+|+++.++.
T Consensus       270 y~~d~~~-~-~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~  347 (430)
T PRK00178        270 YVMDLAS-R-QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM  347 (430)
T ss_pred             EEEECCC-C-CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence            8889886 3 34445556666778899999998887766554  57778888777544332 2 2334689999999888


Q ss_pred             EEcC-C--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceE
Q 003842          655 AAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFH  727 (792)
Q Consensus       655 ~s~d-g--~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~  727 (792)
                      ...+ +  .|.+||+.+++.......  .......|+|||++|+..+.+    .|+++++...    ....+....+.+.
T Consensus       348 ~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~  421 (430)
T PRK00178        348 VHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVR  421 (430)
T ss_pred             EEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcC
Confidence            7753 2  588999988765432222  223356899999988876643    5777777432    2223333444566


Q ss_pred             EEEEeC
Q 003842          728 SCVFHP  733 (792)
Q Consensus       728 si~fsp  733 (792)
                      ..+|+|
T Consensus       422 ~p~ws~  427 (430)
T PRK00178        422 EPSWSP  427 (430)
T ss_pred             CCccCC
Confidence            666765

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.36  E-value=4.7e-11  Score=120.28  Aligned_cols=148  Identities=13%  Similarity=0.281  Sum_probs=110.6

Q ss_pred             EEEEECCCCCeEEEEeC----------CCcEEEEeCCCCCceeEEecc-cCCCeEEEEEcCCCCeEEEE-EeCCCcEEEE
Q 003842          558 TDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICS-CDGDGEIRYW  625 (792)
Q Consensus       558 ~~i~fspdg~~Lasgs~----------Dg~V~IWdl~s~~~~i~~~~~-h~~~V~sl~fspd~~~ll~s-gs~Dg~I~iw  625 (792)
                      ..+.|+++|++|++-..          -+...||.++.....+..+.- ..+.|.+++|+|+++.++++ |..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999987665433          234666666544444444432 34579999999999887544 4567899999


Q ss_pred             EcCCCeeEEEee-CCeeEEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC--
Q 003842          626 SINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE--  699 (792)
Q Consensus       626 dl~~~~~~~~~~-~~~~~v~~sp~~~~lla~s~---dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~--  699 (792)
                      |++ ++.+..+. .....+.|+|+|.++++++.   .|.|.+||.++.+.+..+. | ..++.++|+|||++|++++.  
T Consensus        89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~  165 (194)
T PF08662_consen   89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSP  165 (194)
T ss_pred             cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEecc
Confidence            997 55555554 45678999999999999875   4679999999988887765 3 34789999999999998863  


Q ss_pred             ----C-eEEEEECC
Q 003842          700 ----D-SVRVWTVG  708 (792)
Q Consensus       700 ----d-~I~IwDl~  708 (792)
                          | .++||++.
T Consensus       166 r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  166 RLRVDNGFKIWSFQ  179 (194)
T ss_pred             ceeccccEEEEEec
Confidence                4 78999984

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=3e-10  Score=128.55  Aligned_cols=212  Identities=12%  Similarity=0.123  Sum_probs=139.8

Q ss_pred             cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCe--EEEEEeCCC--cEEEEEcCCCeeEE--EeeCCeeEEEEecCCC
Q 003842          577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDG--EIRYWSINNGSCTR--VFKGGTAQMRFQPHLG  650 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~--ll~sgs~Dg--~I~iwdl~~~~~~~--~~~~~~~~v~~sp~~~  650 (792)
                      .|.+.|.+.  ...+.+......+.+-.|+|||+.  ++++...+|  .|++.++..++...  .+.+......|+|+++
T Consensus       166 ~l~~~d~dG--~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        166 ELWSVDYDG--QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK  243 (428)
T ss_pred             eEEEEcCCC--CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence            466666653  444555556667788899999876  333555444  58888888776443  3456666789999999


Q ss_pred             EEEEEEc-CC----eEEEEECCCC---eEEEEecCCCCCeEEEEEcCCCCEEEEEeC-C---eEEEEECCCCCCcceEEE
Q 003842          651 RYLAAAA-EN----VVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSE-D---SVRVWTVGSGSEGECVHE  718 (792)
Q Consensus       651 ~lla~s~-dg----~I~i~D~~t~---~~~~~l~~h~~~V~sv~~spdg~~Las~s~-d---~I~IwDl~s~~~~~~i~~  718 (792)
                      +|+.... +|    .+.+|++..+   +.......+.......+|+|||+.|+..+. +   .|+++++....  .....
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~  321 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRL  321 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEE
Confidence            9887764 22    3444676652   333333333334567899999998887764 2   45555554211  22333


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC-C--CcEEEeC
Q 003842          719 LSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH-D--KFVKLWK  792 (792)
Q Consensus       719 ~~~~~~~i~si~fspdg~~L~sgs~d---g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~-D--G~I~IWd  792 (792)
                      +......+....|+|||++|+..+.+   ..|++||+.+++...+......+....|+|||++|+.... +  ..|++||
T Consensus       322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd  401 (428)
T PRK01029        322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS  401 (428)
T ss_pred             eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence            44444566788999999999887654   3799999999988766655556788999999998875443 2  3455553

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.32  E-value=2.4e-10  Score=125.69  Aligned_cols=184  Identities=18%  Similarity=0.278  Sum_probs=147.3

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeEEecc---CCCCEEEEEEC------C--------------CCCeEEEEeCCCcE
Q 003842          522 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE---HSSLITDVRFS------P--------------SMPRLATSSFDKTV  578 (792)
Q Consensus       522 pdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~---h~~~V~~i~fs------p--------------dg~~Lasgs~Dg~V  578 (792)
                      +-..|+|....||.++|||+.+++....+..   -.+..++..|.      |              +-..|+-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4456999999999999999998887766652   23445555552      1              33468888899999


Q ss_pred             EEEeCCCCCceeEEec--ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEE
Q 003842          579 RVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL  653 (792)
Q Consensus       579 ~IWdl~s~~~~i~~~~--~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll  653 (792)
                      .+|++.. ++....+.  .|.+.|.++.++.+- ..|++++.|+.+.+|+...+..++.+++   ....++++||++.++
T Consensus        83 ~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~  160 (541)
T KOG4547|consen   83 LLYSVAG-GEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL  160 (541)
T ss_pred             EEEEecC-CeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence            9999987 44444444  689999999988764 4778999999999999999999998875   456789999988777


Q ss_pred             EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC-----CCEEEEEeCC--eEEEEECCC
Q 003842          654 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-----GELLASVSED--SVRVWTVGS  709 (792)
Q Consensus       654 a~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd-----g~~Las~s~d--~I~IwDl~s  709 (792)
                      +++  +.|.+||+++.+.+.+|.+|.++|+++.|..+     |+++.++..-  .|.+|-++.
T Consensus       161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            665  68999999999999999999999999999876     7777765543  688887765

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=1.8e-10  Score=127.65  Aligned_cols=274  Identities=19%  Similarity=0.278  Sum_probs=197.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------------ceeEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 003842          511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---------------KSKTNLEEHSSLITDVRFSPSMPRLATSSFD  575 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~---------------~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D  575 (792)
                      ......|++|+....|||+|+.||.++|..+.+.               ..-.++++|...|..+.|+.+...|-++..+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            3456899999999999999999999999977532               2234678999999999999999999999999


Q ss_pred             CcEEEEeCCCCCceeEEe-cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-EEeeC-CeeEEEEecCCCEE
Q 003842          576 KTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFKG-GTAQMRFQPHLGRY  652 (792)
Q Consensus       576 g~V~IWdl~s~~~~i~~~-~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~-~~~~~-~~~~v~~sp~~~~l  652 (792)
                      |.|.||-+-++..+-..+ ...++.|.+++|+.+|.. |+....||.|.+=.++..+.- +.+++ ....+.|++|...+
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~  171 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA  171 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence            999999998754332222 234567899999999875 457788999888776644322 22333 23468899999999


Q ss_pred             EEEEcCCeEEEEECCCC-------eEEEE----ecCCCCCeEEEEEc--------CCCCEEEEEeCC-eEEEEECCCCCC
Q 003842          653 LAAAAENVVSILDAETQ-------ACRLS----LQGHTKPIDSVCWD--------PSGELLASVSED-SVRVWTVGSGSE  712 (792)
Q Consensus       653 la~s~dg~I~i~D~~t~-------~~~~~----l~~h~~~V~sv~~s--------pdg~~Las~s~d-~I~IwDl~s~~~  712 (792)
                      +.+-.+|.+.+||....       .+...    +......|-.++|.        |+...|++|.++ .+.|..-.....
T Consensus       172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~  251 (1189)
T KOG2041|consen  172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE  251 (1189)
T ss_pred             HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence            99999999999997643       11111    11222336666664        366788888877 777765544332


Q ss_pred             cceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 003842          713 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---------SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS  783 (792)
Q Consensus       713 ~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---------~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs  783 (792)
                      +..+.    .+-.+..+.|+++|..|++++.+.         .|.+|..-....-++......|++++|--.|-.+|.+ 
T Consensus       252 Pvv~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A-  326 (1189)
T KOG2041|consen  252 PVVVD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-  326 (1189)
T ss_pred             CeEEe----cccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-
Confidence            22222    246788999999999999998752         5677766554444777778889999997777666655 


Q ss_pred             CCCcEEE
Q 003842          784 HDKFVKL  790 (792)
Q Consensus       784 ~DG~I~I  790 (792)
                      .|+.|++
T Consensus       327 vdsfiyf  333 (1189)
T KOG2041|consen  327 VDSFIYF  333 (1189)
T ss_pred             ecceEEE
Confidence            4677664

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.31  E-value=8.2e-09  Score=112.07  Aligned_cols=247  Identities=11%  Similarity=0.074  Sum_probs=154.9

Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceeEEeccC-------CCCEEEEEECC
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSP  564 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~----------Dg~I~vWdl~t~~~~~~l~~h-------~~~V~~i~fsp  564 (792)
                      .+.+..+..-..+-. + +||||+.|+++..          +..|.|||+.+++.+..+...       ......++++|
T Consensus        37 ~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~  114 (352)
T TIGR02658        37 GRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP  114 (352)
T ss_pred             CEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC
Confidence            344555554333333 4 9999998887765          789999999999999888742       22344789999


Q ss_pred             CCCeEEEEe-C-CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeE----EEee
Q 003842          565 SMPRLATSS-F-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCT----RVFK  637 (792)
Q Consensus       565 dg~~Lasgs-~-Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~----~~~~  637 (792)
                      ||++|++.. . +..|.|+|+.+ ++.+..+.-. +...-+..+.+ .+++  -+.||......+.+ ++..    ..|.
T Consensus       115 dgk~l~V~n~~p~~~V~VvD~~~-~kvv~ei~vp-~~~~vy~t~e~-~~~~--~~~Dg~~~~v~~d~~g~~~~~~~~vf~  189 (352)
T TIGR02658       115 DNKTLLFYQFSPSPAVGVVDLEG-KAFVRMMDVP-DCYHIFPTAND-TFFM--HCRDGSLAKVGYGTKGNPKIKPTEVFH  189 (352)
T ss_pred             CCCEEEEecCCCCCEEEEEECCC-CcEEEEEeCC-CCcEEEEecCC-ccEE--EeecCceEEEEecCCCceEEeeeeeec
Confidence            999998876 3 68899999998 5555555432 12222222222 1111  12244444433322 1111    1111


Q ss_pred             CCe----eEEEEec-CCCEEEEEEcCCeEEEEECCCC-----eEEEEecC-------CCCCeEEEEEcCCCCEEEEEe--
Q 003842          638 GGT----AQMRFQP-HLGRYLAAAAENVVSILDAETQ-----ACRLSLQG-------HTKPIDSVCWDPSGELLASVS--  698 (792)
Q Consensus       638 ~~~----~~v~~sp-~~~~lla~s~dg~I~i~D~~t~-----~~~~~l~~-------h~~~V~sv~~spdg~~Las~s--  698 (792)
                      ...    ..-.|.+ ++.++++... |.|++.|+...     +....+..       ..+.+.-++++++++++++..  
T Consensus       190 ~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~  268 (352)
T TIGR02658       190 PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ  268 (352)
T ss_pred             CCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence            100    0014455 5555555444 99999996443     33322221       223344599999999887742  


Q ss_pred             --------C-CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEE
Q 003842          699 --------E-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMTL  760 (792)
Q Consensus       699 --------~-d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~~  760 (792)
                              . +.|.++|..+.   +.+..+.. +..+..++++||++ +|++.. .++.|.++|..+++.+..
T Consensus       269 ~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~  337 (352)
T TIGR02658       269 RAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS  337 (352)
T ss_pred             CccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence                    1 37999999776   56666554 56889999999999 777776 467899999999988743

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.29  E-value=6.5e-10  Score=119.98  Aligned_cols=272  Identities=15%  Similarity=0.183  Sum_probs=189.4

Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC-----------
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-----------  576 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg-----------  576 (792)
                      +..-.-++..++|||.|++|++.... -|.+|+...+..+..+.  ...|..+.|+|+++||++=+..+           
T Consensus        28 ~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~  104 (561)
T COG5354          28 FESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF  104 (561)
T ss_pred             ccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCc
Confidence            33356678999999999999988655 48899988777555554  34589999999999999976543           


Q ss_pred             ----cEEEEeCCCCCceeEEecccCCC--eE-EEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----EEEee-CCeeEEE
Q 003842          577 ----TVRVWDADNPGYSLRTFMGHSAS--VM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFK-GGTAQMR  644 (792)
Q Consensus       577 ----~V~IWdl~s~~~~i~~~~~h~~~--V~-sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~-~~~~~v~  644 (792)
                          .+.|||+.+ +..+..+.....+  .+ -+.|+.++.+++-.  ....++|+++ ++..    .+.++ .++....
T Consensus       105 ~~~n~~~vwd~~s-g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFs  180 (561)
T COG5354         105 TSKNNVFVWDIAS-GMIVFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFS  180 (561)
T ss_pred             cccCceeEEeccC-ceeEeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceeeEE
Confidence                499999998 7778887766655  45 67788776644333  3457999997 3332    22233 4667788


Q ss_pred             EecCCCE--EEEE-----EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe------------CCeEEEE
Q 003842          645 FQPHLGR--YLAA-----AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS------------EDSVRVW  705 (792)
Q Consensus       645 ~sp~~~~--lla~-----s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s------------~d~I~Iw  705 (792)
                      |+|.++.  |++-     ...+.+++|.+.....+.+..-....-..+.|.+.|++|++-.            +..++|+
T Consensus       181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~  260 (561)
T COG5354         181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL  260 (561)
T ss_pred             ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence            8887432  3332     2367899999887766554333333345688999999776431            1257888


Q ss_pred             ECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE--cCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 003842          706 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG--CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS  783 (792)
Q Consensus       706 Dl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs--~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs  783 (792)
                      ++...    .+.......++|..++|.|+++.+++++  ..-.+.++|++.+  +.+......=+.+.|+|.+++++.++
T Consensus       261 ~~~e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~ag  334 (561)
T COG5354         261 RITER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAG  334 (561)
T ss_pred             eeccc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEec
Confidence            88632    2222224578999999999998887776  3458999999888  44445555566788899999888877


Q ss_pred             CC---CcEEEeC
Q 003842          784 HD---KFVKLWK  792 (792)
Q Consensus       784 ~D---G~I~IWd  792 (792)
                      -|   |.|.|||
T Consensus       335 F~nl~gni~i~~  346 (561)
T COG5354         335 FDNLQGNIEIFD  346 (561)
T ss_pred             CCccccceEEec
Confidence            65   6677775

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.27  E-value=2.5e-09  Score=119.47  Aligned_cols=253  Identities=13%  Similarity=0.063  Sum_probs=161.0

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCe--
Q 003842          523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--  600 (792)
Q Consensus       523 dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V--  600 (792)
                      ++..+++++.+|.|+.||.++|+.+...............  .+..++.++.+|.|+.||.++ ++.+..+......+  
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~~~~~  180 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAAT-GERLWTYSRVTPALTL  180 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCC-CceeeEEccCCCceee
Confidence            4668888889999999999999988766533221111111  345777888899999999987 44444443222111  


Q ss_pred             ---EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe----e------EEE--EecCCCEEEEEEcCCeEEEEE
Q 003842          601 ---MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----A------QMR--FQPHLGRYLAAAAENVVSILD  665 (792)
Q Consensus       601 ---~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~------~v~--~sp~~~~lla~s~dg~I~i~D  665 (792)
                         .+..+. + . .++.+..++.+..+|+++++.+.......    .      .+.  ....++.+++++.++.++.||
T Consensus       181 ~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d  257 (377)
T TIGR03300       181 RGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD  257 (377)
T ss_pred             cCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence               111222 2 2 45577888999999999998765432110    0      000  111357888888999999999


Q ss_pred             CCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEc
Q 003842          666 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGC  743 (792)
Q Consensus       666 ~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~  743 (792)
                      .++++.+...... . .....  .++..|++++.+ .|+.+|..++   +.+..... ......+...  .+.+|++++.
T Consensus       258 ~~tG~~~W~~~~~-~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG---~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~  328 (377)
T TIGR03300       258 LRSGRVLWKRDAS-S-YQGPA--VDDNRLYVTDADGVVVALDRRSG---SELWKNDELKYRQLTAPAV--VGGYLVVGDF  328 (377)
T ss_pred             CCCCcEEEeeccC-C-ccCce--EeCCEEEEECCCCeEEEEECCCC---cEEEccccccCCccccCEE--ECCEEEEEeC
Confidence            9999888766521 1 12222  245566666666 9999999877   33333321 1112222222  4668999999


Q ss_pred             CCeEEEEECCCCcEE-EEcccCCCe-EEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          744 YQSLELWNMSENKTM-TLTAHEGLI-AALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       744 dg~I~IwDl~~~~~~-~~~~h~~~V-~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +|.|++||..+++.+ .+..+...+ .+..+. ++ .|+.++.||.|+.|.
T Consensus       329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~~  377 (377)
T TIGR03300       329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAFR  377 (377)
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEeC
Confidence            999999999999988 444444333 333333 33 577889999998874

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.26  E-value=3.5e-11  Score=133.79  Aligned_cols=278  Identities=15%  Similarity=0.294  Sum_probs=194.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEecc-CCCCEEEEEECCCC--CeEEEEeCCCcEEEEeCCCCC
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEE-HSSLITDVRFSPSM--PRLATSSFDKTVRVWDADNPG  587 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t-~~~~~~l~~-h~~~V~~i~fspdg--~~Lasgs~Dg~V~IWdl~s~~  587 (792)
                      .+.+.++.++|.|+-+|.++.-|. .+.|++. +....-+.. ..-.|-++.|++..  .+-++......-.||++....
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            355888999999999999987764 4556654 333333321 12346778888743  355555555667889987432


Q ss_pred             --ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEE---eeCCeeEEEEecCCCEEEEEEcCCeE
Q 003842          588 --YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRV---FKGGTAQMRFQPHLGRYLAAAAENVV  661 (792)
Q Consensus       588 --~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~-~~~---~~~~~~~v~~sp~~~~lla~s~dg~I  661 (792)
                        ..-..+.+|...|+++.|++....++++|+.|-.|..||+++... +..   .......+.|+.....+++.+..+.|
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i  182 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI  182 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence              344566789999999999999999999999999999999997643 222   34567789999999999999999999


Q ss_pred             EEEECCCC-eEEEEecCCCCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003842          662 SILDAETQ-ACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL  738 (792)
Q Consensus       662 ~i~D~~t~-~~~~~l~~h~~~V~sv~~spd-g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L  738 (792)
                      .+||++.+ .++..+++|...|+.++|..- ...+.+++.| +|++||.....+  .-........+|+.-.+.|-|+-.
T Consensus       183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~~r~~Pfg~g~  260 (1081)
T KOG0309|consen  183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWRGRYLPFGEGY  260 (1081)
T ss_pred             EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCcceeccccccCcee
Confidence            99999987 788889999999999998763 2356666666 999999975422  112222334566666777755432


Q ss_pred             EEE--EcCCeEEE---------EECCCCc-EE-EEcccCCCeEEEEEeCCCC----------EEEEEeCCCcEEEeC
Q 003842          739 LVI--GCYQSLEL---------WNMSENK-TM-TLTAHEGLIAALAVSTETG----------YVASASHDKFVKLWK  792 (792)
Q Consensus       739 ~sg--s~dg~I~I---------wDl~~~~-~~-~~~~h~~~V~sl~fspdg~----------~LaSgs~DG~I~IWd  792 (792)
                      ++-  -.+..|.+         |+..++. .+ ++.+|.+.|...-|-..+.          .|+|-+.|..+++|.
T Consensus       261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp  337 (1081)
T KOG0309|consen  261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP  337 (1081)
T ss_pred             EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence            221  11223333         3333322 22 7889999888776643211          599999999999993

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.25  E-value=3.5e-10  Score=114.62  Aligned_cols=241  Identities=19%  Similarity=0.216  Sum_probs=165.2

Q ss_pred             CCCCeEEEEEcC---CCC-EEEEEeCCCeEEEEECCCCceeEEeccC------CCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003842          511 STSKVICCHFSS---DGK-LLATGGHDKKAVLWHTDTLKSKTNLEEH------SSLITDVRFSPSMPRLATSSFDKTVRV  580 (792)
Q Consensus       511 H~~~V~~lafsp---dg~-~Lasgs~Dg~I~vWdl~t~~~~~~l~~h------~~~V~~i~fspdg~~Lasgs~Dg~V~I  580 (792)
                      -+..+..+.|..   +|. .|+-+..+|.|.+|.....+....+.+-      .....++.|++.+..++++-.+|.+.+
T Consensus        68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~  147 (339)
T KOG0280|consen   68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG  147 (339)
T ss_pred             cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence            344566666653   444 5666777899999987655444444432      113467889999999999999999985


Q ss_pred             EeCCC-CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCC
Q 003842          581 WDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN  659 (792)
Q Consensus       581 Wdl~s-~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg  659 (792)
                      -+... .-+.+.+++.|..+++...|+....+++++|++|+.+..||++..+ ..                         
T Consensus       148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~-------------------------  201 (339)
T KOG0280|consen  148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TF-------------------------  201 (339)
T ss_pred             EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ce-------------------------
Confidence            55443 1233457889999999999998888999999999999999998322 11                         


Q ss_pred             eEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-
Q 003842          660 VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-  736 (792)
Q Consensus       660 ~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-  736 (792)
                         +|.        ..+-|...|.+|.-+| .+.+|++|+.| .|++||.++..  +++..-. ..+.|+.+.++|.-. 
T Consensus       202 ---i~~--------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--kPl~~~~-v~GGVWRi~~~p~~~~  267 (339)
T KOG0280|consen  202 ---IWH--------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--KPLFKAK-VGGGVWRIKHHPEIFH  267 (339)
T ss_pred             ---eee--------cceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--CccccCc-cccceEEEEecchhhh
Confidence               010        0123677788887776 57799999999 99999998543  3333222 237899999999543 


Q ss_pred             EEEEEEcCCeEEEEECCCCcEE------EEcccCCCeEEEEEeCCCCEEEEEeC-CCcEE-Ee
Q 003842          737 SLLVIGCYQSLELWNMSENKTM------TLTAHEGLIAALAVSTETGYVASASH-DKFVK-LW  791 (792)
Q Consensus       737 ~L~sgs~dg~I~IwDl~~~~~~------~~~~h~~~V~sl~fspdg~~LaSgs~-DG~I~-IW  791 (792)
                      .+++++..+..+|.+...+...      ....|.+.+..-.|.....+||||+- |+.|+ +|
T Consensus       268 ~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  268 RLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             HHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence            3455555556777766554322      44567887888888555567888764 77755 77

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=3.9e-11  Score=129.28  Aligned_cols=278  Identities=18%  Similarity=0.238  Sum_probs=191.0

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-------CceeEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK  576 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t-------~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg  576 (792)
                      .+..+.||..+|..++--.+.+.+++++.|++|++|.++.       ..+..++..|...|.++.|..+.++++++  ||
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            4456789999999999888888999999999999999852       34677888999999999999998877765  78


Q ss_pred             cEEEEeCCCCCceeEEe-----cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--------CCeeEE
Q 003842          577 TVRVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQM  643 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~~~-----~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--------~~~~~v  643 (792)
                      .|.+||.-- +..+...     .+..+.|.|+. +-+...+++.|+...+|+++|.+..+.+..++        .-+.++
T Consensus       805 giHlWDPFi-gr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i  882 (1034)
T KOG4190|consen  805 GIHLWDPFI-GRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI  882 (1034)
T ss_pred             cceeecccc-cchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence            899999865 3322211     11223344432 11334455556889999999999987766553        235678


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEE-EECCCCCCcceEEEeec
Q 003842          644 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV-WTVGSGSEGECVHELSC  721 (792)
Q Consensus       644 ~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~I-wDl~s~~~~~~i~~~~~  721 (792)
                      ++.+.|++++++-++|.|.+.|.++++++..+...+.....++- |....|+....| ++.| |....+   ......+.
T Consensus       883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg---imh~q~kp  958 (1034)
T KOG4190|consen  883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG---IMHLQDKP  958 (1034)
T ss_pred             EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC---eeeeccCC
Confidence            89999999999999999999999999999887765555554443 555667766666 7777 876543   11111111


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-C------cEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          722 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-N------KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       722 ~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~-~------~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ...+..  -+-.-|..+++......+.||--.. .      ..+......+..++++.-|-+.-++.|++.|.|.+.
T Consensus       959 ppepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaLl 1033 (1034)
T KOG4190|consen  959 PPEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIALL 1033 (1034)
T ss_pred             CCcchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceeec
Confidence            111110  1122355677777777778874221 1      112233456778888888877777788889988763

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.24  E-value=7.8e-09  Score=115.48  Aligned_cols=255  Identities=16%  Similarity=0.125  Sum_probs=160.2

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEE
Q 003842          523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS  602 (792)
Q Consensus       523 dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~s  602 (792)
                      .+..+++++.+|.|+.||..+|+.+..+.........+..  ++..+++++.+|.|+.||..+ ++.+...... ..+.+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~-~~~~~  139 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAED-GKELWRAKLS-SEVLS  139 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCC-CcEeeeeccC-ceeec
Confidence            3568888989999999999999988776644332222322  466888899999999999987 4544443322 22222


Q ss_pred             EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEE------ecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003842          603 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF------QPHLGRYLAAAAENVVSILDAETQACRLSLQ  676 (792)
Q Consensus       603 l~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~------sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~  676 (792)
                      ..... ++ .++.++.+|.|+.||.++++.+..++.....+.+      .-.++.++++..++.+..+|.++++.+....
T Consensus       140 ~p~v~-~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~  217 (377)
T TIGR03300       140 PPLVA-NG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQR  217 (377)
T ss_pred             CCEEE-CC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence            11111 23 3446777999999999999988776543211100      0123577888888999999999998776543


Q ss_pred             CCCC----C---eEEEEEcC--CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003842          677 GHTK----P---IDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS  746 (792)
Q Consensus       677 ~h~~----~---V~sv~~sp--dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~  746 (792)
                      ....    .   +..+.-+|  .+.++++++.+ .++.||..++   +.+.....  ......+  .++..|++++.+|.
T Consensus       218 ~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG---~~~W~~~~--~~~~~p~--~~~~~vyv~~~~G~  290 (377)
T TIGR03300       218 VALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG---RVLWKRDA--SSYQGPA--VDDNRLYVTDADGV  290 (377)
T ss_pred             cccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC---cEEEeecc--CCccCce--EeCCEEEEECCCCe
Confidence            2100    0   00010011  24456666656 9999999877   33333321  1111222  35678888899999


Q ss_pred             EEEEECCCCcEEEEc-cc-CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          747 LELWNMSENKTMTLT-AH-EGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       747 I~IwDl~~~~~~~~~-~h-~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |+.+|..+++.+... .. ...+.+..+  .+.+|++++.||.|++||
T Consensus       291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d  336 (377)
T TIGR03300       291 VVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS  336 (377)
T ss_pred             EEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence            999999999876322 21 122223233  356888899999998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.24  E-value=2.3e-08  Score=104.92  Aligned_cols=259  Identities=11%  Similarity=0.116  Sum_probs=177.9

Q ss_pred             CCeEEEEECCCCcee---EEeccCCCCEEEEEECCCCCeEEEEeC---CCcEEEEeCCCCCceeEEe---cccCCCeEEE
Q 003842          533 DKKAVLWHTDTLKSK---TNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTF---MGHSASVMSL  603 (792)
Q Consensus       533 Dg~I~vWdl~t~~~~---~~l~~h~~~V~~i~fspdg~~Lasgs~---Dg~V~IWdl~s~~~~i~~~---~~h~~~V~sl  603 (792)
                      +.-|++|++++..-.   ..+-.+...++-|+|+++.++|+++..   +|.|..|.++.....+..+   ......-+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            466999998743221   122356778899999999999988855   4778888887532222222   1222334789


Q ss_pred             EEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEE---e------------eCCeeEEEEecCCCEEEEEEc-CCeEEEEEC
Q 003842          604 DFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F------------KGGTAQMRFQPHLGRYLAAAA-ENVVSILDA  666 (792)
Q Consensus       604 ~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~---~------------~~~~~~v~~sp~~~~lla~s~-dg~I~i~D~  666 (792)
                      ++++++..++++-...|.|.++-+.. |.....   +            ..+.....+.|++++++++.- ...|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            99999998887777889999999965 332211   1            123566889999988888775 568999999


Q ss_pred             CCCeEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC-CCcceEEEeec------CCCceEEEEEeCC
Q 003842          667 ETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSC------NGNKFHSCVFHPT  734 (792)
Q Consensus       667 ~t~~~~~~l~---~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~-~~~~~i~~~~~------~~~~i~si~fspd  734 (792)
                      ..++....-.   .....-+.|.|+|++++..+.++=  +|.+|.+... .+.+.+..+..      ...+...|.+++|
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d  254 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD  254 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence            9775433211   233456789999999988877753  9999999764 22333333222      2345778899999


Q ss_pred             CCEEEEEEcC-CeEEEEECCC--CcEE---EEcccCCCeEEEEEeCCCCEEEEEeCC-CcEEEe
Q 003842          735 YPSLLVIGCY-QSLELWNMSE--NKTM---TLTAHEGLIAALAVSTETGYVASASHD-KFVKLW  791 (792)
Q Consensus       735 g~~L~sgs~d-g~I~IwDl~~--~~~~---~~~~h~~~V~sl~fspdg~~LaSgs~D-G~I~IW  791 (792)
                      |++|+++... ..|.+|.+..  +++.   ....+....+.+.|++.+++|++++.| ..|.+|
T Consensus       255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf  318 (346)
T COG2706         255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF  318 (346)
T ss_pred             CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence            9999988654 3788887654  3332   223344557899999999999998875 456665

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.23  E-value=3.2e-10  Score=124.67  Aligned_cols=205  Identities=16%  Similarity=0.220  Sum_probs=146.6

Q ss_pred             CCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEE
Q 003842          564 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM  643 (792)
Q Consensus       564 pdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v  643 (792)
                      +...+||....||.++|||..+ +.....|.            |.     +..+..++...|.+.-+........-....
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~-~~~~~e~~------------p~-----~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~   64 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAK-NQLQQEFA------------PI-----ASLSGTCTYTKWGLSADYSPMKWLSLEKAK   64 (541)
T ss_pred             chhheEeecCCCCeEEEEEccC-ceeeeeec------------cc-----hhccCcceeEEEEEEeccchHHHHhHHHHh
Confidence            3456899999999999999987 33333222            11     011112223333321111000000000111


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee
Q 003842          644 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS  720 (792)
Q Consensus       644 ~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~--~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~  720 (792)
                      ..+.+...++.|...|.|.+|++..++....+.  .|.+.|.++.++.+-..|.+++.| .+..|+....   ..++.+.
T Consensus        65 ~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---~~~~~~~  141 (541)
T KOG4547|consen   65 KASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---VIIRIWK  141 (541)
T ss_pred             hccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---eeeeeec
Confidence            123344567778889999999999998888776  499999999999999999999999 9999999765   7788888


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCC-----CCEEEEE-eCCCcEEEe
Q 003842          721 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE-----TGYVASA-SHDKFVKLW  791 (792)
Q Consensus       721 ~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspd-----g~~LaSg-s~DG~I~IW  791 (792)
                      +....+.+++++||++.+++++  +.|++||+++++.+ .+.+|.++|+++.|..+     |.+|+++ ..+..|.+|
T Consensus       142 ~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w  217 (541)
T KOG4547|consen  142 EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW  217 (541)
T ss_pred             cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence            8888999999999999998887  58999999999988 88999999999999877     6666554 345566676

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.20  E-value=2.4e-08  Score=121.98  Aligned_cols=279  Identities=15%  Similarity=0.212  Sum_probs=184.1

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEE----ECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLW----HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vW----dl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      ...+.|.++.|-+|...|+.+..+|.|.++    +..+.. +.....-...|.+++||||+..|+..+.+++|.+.+.+=
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            446789999999999999999999999999    444322 223334567899999999999999999999888764320


Q ss_pred             ------------CC----------ceeEEecc------------------------cCCCeEEEEEcCCCCeEEEEEe--
Q 003842          586 ------------PG----------YSLRTFMG------------------------HSASVMSLDFHPNKDDLICSCD--  617 (792)
Q Consensus       586 ------------~~----------~~i~~~~~------------------------h~~~V~sl~fspd~~~ll~sgs--  617 (792)
                                  .+          +.-..|.|                        ....-..|+|-.||.+++++.-  
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence                        00          00000100                        2334567899999986665543  


Q ss_pred             CC---CcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEE----ecCCCCCeEE
Q 003842          618 GD---GEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLS----LQGHTKPIDS  684 (792)
Q Consensus       618 ~D---g~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~---dg~I~i~D~~t~~~~~~----l~~h~~~V~s  684 (792)
                      .+   ..||||+-+ |....+-+   +-...++|.|.|+.|++.-.   ...|.+|.- +|-....    +......|..
T Consensus       232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~  309 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIE  309 (928)
T ss_pred             CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeE
Confidence            22   579999876 55444332   33456899999988877665   235555553 3322222    2234567999


Q ss_pred             EEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeec-CCCceEEEEEeCCCC-EEEEEEcCCeEEEEEC----CCC---
Q 003842          685 VCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYP-SLLVIGCYQSLELWNM----SEN---  755 (792)
Q Consensus       685 v~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~-~~~~i~si~fspdg~-~L~sgs~dg~I~IwDl----~~~---  755 (792)
                      +.|+.|+.+||....|.|.+|...+..- -...++.. ....+..+.|+|... .|.+.+.+|.+.++++    ..+   
T Consensus       310 l~Wn~ds~iLAv~~~~~vqLWt~~NYHW-YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~  388 (928)
T PF04762_consen  310 LAWNSDSEILAVWLEDRVQLWTRSNYHW-YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS  388 (928)
T ss_pred             EEECCCCCEEEEEecCCceEEEeeCCEE-EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence            9999999999999888999999876521 22222322 223345589998654 4666666565544432    211   


Q ss_pred             -------------cEE----------------EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          756 -------------KTM----------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       756 -------------~~~----------------~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                                   ..+                ........|.+++|++++..+|+-..||.|.+|+
T Consensus       389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             CccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence                         111                0111356899999999998899999999999884

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.19  E-value=1.2e-09  Score=110.66  Aligned_cols=196  Identities=21%  Similarity=0.235  Sum_probs=145.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE--EeccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCcee
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSL  590 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~--~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~~~i  590 (792)
                      ...++.|++.+.-++++..+|.+.+-+........  .++.|...++...|+. +.+++++|+.|+.+..||++.++..+
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence            35678899999999999999999976666555444  7889999999999987 44689999999999999999655554


Q ss_pred             EE-ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEE--eeCCeeEEEEecCCC-EEEEEEcCCeEEEEE
Q 003842          591 RT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV--FKGGTAQMRFQPHLG-RYLAAAAENVVSILD  665 (792)
Q Consensus       591 ~~-~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~--~~~~~~~v~~sp~~~-~lla~s~dg~I~i~D  665 (792)
                      .. ...|...|.+|.-+|....+|++|+.|-.|++||.+. ++.+..  ..+++..+..+|... .+++++.-+..+|.+
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~  282 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD  282 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence            44 5679999999999998889999999999999999984 555543  346788888887653 455666666666666


Q ss_pred             CCCC--e---EEEEecCCCCCeEEEEEcCCCCEEEEEeC-C-eEE-EEECCC
Q 003842          666 AETQ--A---CRLSLQGHTKPIDSVCWDPSGELLASVSE-D-SVR-VWTVGS  709 (792)
Q Consensus       666 ~~t~--~---~~~~l~~h~~~V~sv~~spdg~~Las~s~-d-~I~-IwDl~s  709 (792)
                      ....  +   .....+.|.+-+..-.|.....+|++|+. | .++ +|-..+
T Consensus       283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence            6554  2   33445556666666666555557888763 3 433 665444

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.18  E-value=1.2e-08  Score=109.20  Aligned_cols=145  Identities=19%  Similarity=0.197  Sum_probs=115.8

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY  588 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg-~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~  588 (792)
                      +|.+.|.-..+..+++-++.|..|| .|-|||.++++. +.+...-+.|.++..+++|++++++.....|.++|+++ +.
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-gn  434 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GN  434 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CC
Confidence            7788899999999999999999999 899999988764 44556678899999999999999999999999999998 44


Q ss_pred             eeEEecccCCCeEEEEEcCCCCeEEEEEeCCC----cEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEc
Q 003842          589 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       589 ~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg----~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~  657 (792)
                      ....-....+-|+.++|+|++..+ |-+--+|    .|+++|+..++......  ....+-+|.|++++|..-+.
T Consensus       435 v~~idkS~~~lItdf~~~~nsr~i-AYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         435 VRLIDKSEYGLITDFDWHPNSRWI-AYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             eeEecccccceeEEEEEcCCceeE-EEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence            444444566789999999997654 4444444    68999999988776554  34455789999988876554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.18  E-value=2.3e-08  Score=106.99  Aligned_cols=281  Identities=15%  Similarity=0.157  Sum_probs=183.2

Q ss_pred             CCcceeccCCc-ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeEEeccCCCC--EEEEEECCC
Q 003842          490 GGRGMDVSQGF-SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSL--ITDVRFSPS  565 (792)
Q Consensus       490 ~~~~~d~~~~~-~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~-t~~~~~~l~~h~~~--V~~i~fspd  565 (792)
                      .+++|-...+. .|+.+..+.+|-+...-+    .++..+....||.=.||.++ +|+-++   .|+.-  -.+-..+.|
T Consensus       205 rGklWis~d~g~tFeK~vdl~~~vS~PmIV----~~RvYFlsD~eG~GnlYSvdldGkDlr---rHTnFtdYY~R~~nsD  277 (668)
T COG4946         205 RGKLWISSDGGKTFEKFVDLDGNVSSPMIV----GERVYFLSDHEGVGNLYSVDLDGKDLR---RHTNFTDYYPRNANSD  277 (668)
T ss_pred             cceEEEEecCCcceeeeeecCCCcCCceEE----cceEEEEecccCccceEEeccCCchhh---hcCCchhccccccCCC
Confidence            34566665554 788888887775433222    12333334456554555443 222222   22211  122233557


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCceeEEec-----ccC-----CCeEEEE-EcCCCCeEEEEEeCCCcEEEEEcCCCeeEE
Q 003842          566 MPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHS-----ASVMSLD-FHPNKDDLICSCDGDGEIRYWSINNGSCTR  634 (792)
Q Consensus       566 g~~Lasgs~Dg~V~IWdl~s~~~~i~~~~-----~h~-----~~V~sl~-fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~  634 (792)
                      |+.|+.. ..|.|++||.+++......+.     ...     .+..-+. |++-...+++..+ .|...|.+...+-.+.
T Consensus       278 GkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq  355 (668)
T COG4946         278 GKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ  355 (668)
T ss_pred             CcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE
Confidence            8877665 356699999987432211111     000     0111111 3333344565555 6777787777666655


Q ss_pred             Ee-eCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 003842          635 VF-KGGTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS  711 (792)
Q Consensus       635 ~~-~~~~~~v~~sp~~~~lla~s~dg-~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~  711 (792)
                      .- ++.+....+..+...++.+..|| .|-|||.++++... +...-+.|.++..+++|++++++.+. .|.++|+.+++
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            43 45667777888888889999988 99999999887554 44456789999999999999988888 99999998873


Q ss_pred             CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC----eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 003842          712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS  783 (792)
Q Consensus       712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg----~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs  783 (792)
                         ....-....+-|+.+.|||++++||.+--+|    .|++||+.+++........+.=.+-+|.||+++|..-+
T Consensus       435 ---v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         435 ---VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ---eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence               2222234456799999999999999987776    79999999999887666666566789999999887654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.15  E-value=2.7e-08  Score=123.67  Aligned_cols=232  Identities=11%  Similarity=0.097  Sum_probs=155.4

Q ss_pred             EEEEECCC-CCeEEEEeCCCcEEEEeCCCCCceeEEecc--c------------CCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003842          558 TDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMG--H------------SASVMSLDFHPNKDDLICSCDGDGEI  622 (792)
Q Consensus       558 ~~i~fspd-g~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~--h------------~~~V~sl~fspd~~~ll~sgs~Dg~I  622 (792)
                      ..++++++ +.++++-+.++.|++||...  ..+..+.+  .            -.....|+|.++++.++++-...+.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            46788774 55677777888999999864  33333322  1            12357899998877666565567889


Q ss_pred             EEEEcCCCeeEEEee-------------------CCeeEEEEecCCCEEEE-EEcCCeEEEEECCCCeEEEEecCC----
Q 003842          623 RYWSINNGSCTRVFK-------------------GGTAQMRFQPHLGRYLA-AAAENVVSILDAETQACRLSLQGH----  678 (792)
Q Consensus       623 ~iwdl~~~~~~~~~~-------------------~~~~~v~~sp~~~~lla-~s~dg~I~i~D~~t~~~~~~l~~h----  678 (792)
                      +++|+.++.......                   .....++++++++.+++ ...++.|++||..++.... +.+.    
T Consensus       649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~  727 (1057)
T PLN02919        649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER  727 (1057)
T ss_pred             EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence            999998765432211                   12346889996665554 4567899999998875432 1110    


Q ss_pred             -----------CCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceE----------EEeec--------CCCceE
Q 003842          679 -----------TKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECV----------HELSC--------NGNKFH  727 (792)
Q Consensus       679 -----------~~~V~sv~~spdg~~Las~s-~d-~I~IwDl~s~~~~~~i----------~~~~~--------~~~~i~  727 (792)
                                 -.....|+|+|++++|+++. .+ .|++||+.++......          ..+..        ......
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                       12345699999998555544 44 9999999865321000          00000        011246


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEccc--------------CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          728 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH--------------EGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       728 si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h--------------~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .++|+++|..+++-..++.|++||..++.+..+.+.              -.....|+++++|+++++-+.++.|++||
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence            889999999777777888999999998877654432              12577899999999888888899999996

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.15  E-value=1.7e-09  Score=125.61  Aligned_cols=194  Identities=13%  Similarity=0.200  Sum_probs=151.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC----EEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----ITDVRFSPSMPRLATSSFDKTVRVWDADNPG  587 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~----V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~  587 (792)
                      .+.|....+..+.+.++.++.+..+.+||...+.....+......    ..-+-++++.-++++|+.-+.|.+|+.....
T Consensus        87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen   87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN  166 (967)
T ss_pred             cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence            344555667778889999999999999999887776665533222    1223345666689999999999999998534


Q ss_pred             ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE----EeeCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003842          588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR----VFKGGTAQMRFQPHLGRYLAAAAENVVSI  663 (792)
Q Consensus       588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~----~~~~~~~~v~~sp~~~~lla~s~dg~I~i  663 (792)
                      ..+ .+.+|.+.|.++.|+-+|. +++++++|.++|+|++++.+...    -+...+..++|.+.  ++++++.|-+.++
T Consensus       167 ~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrv  242 (967)
T KOG0974|consen  167 KPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRV  242 (967)
T ss_pred             Ccc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEE
Confidence            444 6889999999999999976 56699999999999999988665    23345677888887  9999999999999


Q ss_pred             EECCCCeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003842          664 LDAETQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSG  710 (792)
Q Consensus       664 ~D~~t~~~~~~l~~h~-~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~  710 (792)
                      |+.+.. .+..+.+|. ..|..++..++...+++++.| .+++||+...
T Consensus       243 W~~~~~-~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  243 WGVNGT-QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             Eecccc-eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            976543 334666665 469999999988899999999 9999998653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.15  E-value=3.9e-08  Score=122.29  Aligned_cols=239  Identities=13%  Similarity=0.144  Sum_probs=160.3

Q ss_pred             EEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeEEecc-C-------------CCCEEEEEECCCCCeEEEEe-CCCcEE
Q 003842          516 ICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEE-H-------------SSLITDVRFSPSMPRLATSS-FDKTVR  579 (792)
Q Consensus       516 ~~lafspd-g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-h-------------~~~V~~i~fspdg~~Lasgs-~Dg~V~  579 (792)
                      ..++++++ ++++++-..++.|++||... ..+..+.. .             -.....|+|.+++..|+++. ..+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788874 56677777788999999764 44444332 1             12357899999888766654 457799


Q ss_pred             EEeCCCCCceeEEeccc-----------------CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----
Q 003842          580 VWDADNPGYSLRTFMGH-----------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----  637 (792)
Q Consensus       580 IWdl~s~~~~i~~~~~h-----------------~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----  637 (792)
                      ++|+.+  ..+.++.+.                 -..-.+|+|+|++..++++...++.|++||..++.......     
T Consensus       650 ~id~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEecCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            999876  234433210                 11236799999777788888889999999998776432110     


Q ss_pred             ------------CCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecC-------------C--------CCCeE
Q 003842          638 ------------GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-------------H--------TKPID  683 (792)
Q Consensus       638 ------------~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~-------------h--------~~~V~  683 (792)
                                  .....++++++++.++++.. ++.|++||++++.......+             .        -....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                        12345889999986665554 68999999987653221100             0        01235


Q ss_pred             EEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE----------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003842          684 SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE----------LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM  752 (792)
Q Consensus       684 sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~----------~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl  752 (792)
                      .++|+++|+++++.+.+ .|++||..++........          ....-.....++++++|+.+++-+.++.|++||+
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            88999999988887777 999999976521111100          0111235678999999997777778889999999


Q ss_pred             CCCcE
Q 003842          753 SENKT  757 (792)
Q Consensus       753 ~~~~~  757 (792)
                      .+++.
T Consensus       888 ~~~~~  892 (1057)
T PLN02919        888 NKGEA  892 (1057)
T ss_pred             CCCcc
Confidence            88764

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.14  E-value=1.9e-09  Score=111.20  Aligned_cols=238  Identities=16%  Similarity=0.258  Sum_probs=155.0

Q ss_pred             CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc----eeEEeccc------------CCCeEEEEEcCCCC-eEEEE
Q 003842          553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----SLRTFMGH------------SASVMSLDFHPNKD-DLICS  615 (792)
Q Consensus       553 h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~----~i~~~~~h------------~~~V~sl~fspd~~-~ll~s  615 (792)
                      ..+-|.+|.|...|.+|+||+.+|.|.+|.-+....    ....+..|            ...|..|.|.++++ ..++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            446689999999999999999999999997764332    22333333            24588899987654 34556


Q ss_pred             EeCCCcEEEEEcCCCeeEE-----------------------------------Ee----eCCeeEEEEecCCCEEEEEE
Q 003842          616 CDGDGEIRYWSINNGSCTR-----------------------------------VF----KGGTAQMRFQPHLGRYLAAA  656 (792)
Q Consensus       616 gs~Dg~I~iwdl~~~~~~~-----------------------------------~~----~~~~~~v~~sp~~~~lla~s  656 (792)
                      .+.|.+|++|.+.......                                   .+    ..++.++.++.+...+ ..+
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~-lSA  182 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF-LSA  182 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE-eec
Confidence            7789999999986432111                                   11    1234556666664444 455


Q ss_pred             cCCeEEEEECCCCeE---EEEecCCC-----CCeEEEEEcCCC-C-EEEEEeCCeEEEEECCCCCC----cceEE-----
Q 003842          657 AENVVSILDAETQAC---RLSLQGHT-----KPIDSVCWDPSG-E-LLASVSEDSVRVWTVGSGSE----GECVH-----  717 (792)
Q Consensus       657 ~dg~I~i~D~~t~~~---~~~l~~h~-----~~V~sv~~spdg-~-~Las~s~d~I~IwDl~s~~~----~~~i~-----  717 (792)
                      .|-.|.+|.++-...   +..++.+.     .-|++..|+|.. + ++++.+.++|++.|++....    .+...     
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            677899998875422   23333332     348888999943 3 44445555999999984310    01111     


Q ss_pred             ----EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC-CCcEE-EEcccC------------CCe---EEEEEeCCC
Q 003842          718 ----ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS-ENKTM-TLTAHE------------GLI---AALAVSTET  776 (792)
Q Consensus       718 ----~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~-~~~~~-~~~~h~------------~~V---~sl~fspdg  776 (792)
                          -+...-..|..+.|+.+|+|+++-.. -+|+|||+. ..+.+ +...|.            ..|   ..++|+-++
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~  341 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND  341 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence                11112245788999999999887543 589999984 33333 443442            122   357899999


Q ss_pred             CEEEEEeCCCcEEEeC
Q 003842          777 GYVASASHDKFVKLWK  792 (792)
Q Consensus       777 ~~LaSgs~DG~I~IWd  792 (792)
                      .+++||+....+++|+
T Consensus       342 ~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  342 SYVMTGSYNNVFRVFN  357 (433)
T ss_pred             ceEecccccceEEEec
Confidence            9999999999999885

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.13  E-value=6.4e-10  Score=113.10  Aligned_cols=237  Identities=17%  Similarity=0.323  Sum_probs=162.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----eeEEeccC------------CCCEEEEEECCCCC--eEEEE
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEH------------SSLITDVRFSPSMP--RLATS  572 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~-----~~~~l~~h------------~~~V~~i~fspdg~--~Lasg  572 (792)
                      .+.|+++.|...|.||++|...|.|.+|.-+...     ....+.+|            ...|..|.|..++.  .++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4569999999999999999999999999765432     12223333            34588899987543  67888


Q ss_pred             eCCCcEEEEeCCCCCc-----------------------------------------eeEEe-cccCCCeEEEEEcCCCC
Q 003842          573 SFDKTVRVWDADNPGY-----------------------------------------SLRTF-MGHSASVMSLDFHPNKD  610 (792)
Q Consensus       573 s~Dg~V~IWdl~s~~~-----------------------------------------~i~~~-~~h~~~V~sl~fspd~~  610 (792)
                      +.|++|++|.+.....                                         +.+.+ ..|...|.+|.|+.|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            8999999998864310                                         01111 35777789999998876


Q ss_pred             eEEEEEeCCCcEEEEEcCCCe-eEEE--ee--------CCeeEEEEecCCC-EEEEEEcCCeEEEEECCCCeE------E
Q 003842          611 DLICSCDGDGEIRYWSINNGS-CTRV--FK--------GGTAQMRFQPHLG-RYLAAAAENVVSILDAETQAC------R  672 (792)
Q Consensus       611 ~ll~sgs~Dg~I~iwdl~~~~-~~~~--~~--------~~~~~v~~sp~~~-~lla~s~dg~I~i~D~~t~~~------~  672 (792)
                      .++ + ..|-.|.+|+++... +...  ++        .-+++..|+|... .+...++.|.|++.|++....      +
T Consensus       186 t~l-S-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         186 TLL-S-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             eee-e-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            555 4 458889999987432 1111  11        2345677888764 455667789999999984311      1


Q ss_pred             EE----------ecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCC------------Cc---eE
Q 003842          673 LS----------LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG------------NK---FH  727 (792)
Q Consensus       673 ~~----------l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~------------~~---i~  727 (792)
                      +.          +.+-...|..+.|+++|+||++-+.-+|+|||++..+  .++.++..|.            ..   -.
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdkF  341 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDKF  341 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeeeE
Confidence            11          1122356788999999999998777799999998654  4555543331            11   24


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEEC
Q 003842          728 SCVFHPTYPSLLVIGCYQSLELWNM  752 (792)
Q Consensus       728 si~fspdg~~L~sgs~dg~I~IwDl  752 (792)
                      .|.|+.|.+.+++|+..+..-||-.
T Consensus       342 eisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         342 EISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             EEEecCCcccccccccccceeeecc
Confidence            5778888889999988777777653

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=1.8e-08  Score=109.76  Aligned_cols=269  Identities=14%  Similarity=0.194  Sum_probs=181.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC-----------CCcEEEEeC
Q 003842          515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-----------DKTVRVWDA  583 (792)
Q Consensus       515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~-----------Dg~V~IWdl  583 (792)
                      -+-+.|||.|.||++--.-| |.+|--++...+..+. |. .|.-+.|||+.+||+|=+.           ...++|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            46789999999999986554 8899877777666664 43 4889999999999998653           256999999


Q ss_pred             CCCCceeEEecccC--CCe-EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE--Eee-CCeeEEEEecCCCEEEEEEc
Q 003842          584 DNPGYSLRTFMGHS--ASV-MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFK-GGTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       584 ~s~~~~i~~~~~h~--~~V-~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~--~~~-~~~~~v~~sp~~~~lla~s~  657 (792)
                      .+ +...+.|....  ..+ .-+.|+.|++++...  ....|.||+..+..++.  .++ .++....|+|.+..|+.-+.
T Consensus       290 ~t-G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm--~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp  366 (698)
T KOG2314|consen  290 AT-GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM--TGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP  366 (698)
T ss_pred             cc-cchhcceeccCCCccccceEEeccCCceeEEe--ccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence            98 66666665422  222 346789887754433  34789999987644432  222 46677889999777666544


Q ss_pred             C-----CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-----------eEEEEECCCCCCcceEEEeec
Q 003842          658 E-----NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-----------SVRVWTVGSGSEGECVHELSC  721 (792)
Q Consensus       658 d-----g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-----------~I~IwDl~s~~~~~~i~~~~~  721 (792)
                      .     ..+.+..+.++..+++..-+.-.-..+-|-.+|+||+.--+.           .+.|+.++....  .+..+. 
T Consensus       367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI--pve~ve-  443 (698)
T KOG2314|consen  367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI--PVEVVE-  443 (698)
T ss_pred             cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC--Cceeee-
Confidence            2     367777777777766655544444456788888888754321           356666654432  222221 


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCC-CcEEEE--cccCCCeEEEEEeCCCCEEEEEe---CCCcEEEeC
Q 003842          722 NGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSE-NKTMTL--TAHEGLIAALAVSTETGYVASAS---HDKFVKLWK  792 (792)
Q Consensus       722 ~~~~i~si~fspdg~~L~sgs~d---g~I~IwDl~~-~~~~~~--~~h~~~V~sl~fspdg~~LaSgs---~DG~I~IWd  792 (792)
                      -...|..++|.|.|+.+++.+..   .++.+|.+++ .....+  .-.....+.+.|+|.|++++.+.   ..|.+.++|
T Consensus       444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D  523 (698)
T KOG2314|consen  444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD  523 (698)
T ss_pred             cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence            24578899999999988887664   4899998874 222211  11225578899999999988764   357777765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=6e-08  Score=109.34  Aligned_cols=226  Identities=12%  Similarity=0.104  Sum_probs=148.0

Q ss_pred             CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCe-EEEEeCC---CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCC
Q 003842          534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK  609 (792)
Q Consensus       534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~-Lasgs~D---g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~  609 (792)
                      ..|.+-|.+... ...+.... .+....|+|||+. ++..+.+   ..|+++|+.+ +. .+.+....+.+....|+||+
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~-~~~lt~~~g~~~~~~~SPDG  244 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GK-KEKIASSQGMLVVSDVSKDG  244 (419)
T ss_pred             ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC-Cc-EEEEecCCCcEEeeEECCCC
Confidence            455555555443 33333333 7788999999984 6654443   4588899976 33 23333355666778899999


Q ss_pred             CeEEEEEeCC--CcEEEEEcCCCeeEEEeeCC--eeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCe
Q 003842          610 DDLICSCDGD--GEIRYWSINNGSCTRVFKGG--TAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPI  682 (792)
Q Consensus       610 ~~ll~sgs~D--g~I~iwdl~~~~~~~~~~~~--~~~v~~sp~~~~lla~s~d-g--~I~i~D~~t~~~~~~l~~h~~~V  682 (792)
                      +.++++.+.+  ..|+++|+.++.........  .....|+|+++.++..+.. +  .|+++|+.+++........ .. 
T Consensus       245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~~-  322 (419)
T PRK04043        245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-KN-  322 (419)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-Cc-
Confidence            9888777655  46888898887755543332  3456899999998887753 2  7899999888764433221 11 


Q ss_pred             EEEEEcCCCCEEEEEeC--------C--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEE
Q 003842          683 DSVCWDPSGELLASVSE--------D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLEL  749 (792)
Q Consensus       683 ~sv~~spdg~~Las~s~--------d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---~I~I  749 (792)
                       ...|+|||++|+..+.        +  .|.+.|+.++..    ..+... .......|+|||+.|+....++   .|.+
T Consensus       323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~  396 (419)
T PRK04043        323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI  396 (419)
T ss_pred             -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence             2489999998877653        2  577888876532    223222 2233588999999888877553   5788


Q ss_pred             EECCCCcEEEEcccCCCeEEEE
Q 003842          750 WNMSENKTMTLTAHEGLIAALA  771 (792)
Q Consensus       750 wDl~~~~~~~~~~h~~~V~sl~  771 (792)
                      +++.......+....+.|...+
T Consensus       397 ~~l~g~~~~~l~~~~g~~~~p~  418 (419)
T PRK04043        397 IRLNYNKSFLFPLKVGKIQSID  418 (419)
T ss_pred             EecCCCeeEEeecCCCccCCCC
Confidence            8888776666655555554433

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=2.4e-08  Score=112.45  Aligned_cols=191  Identities=10%  Similarity=0.089  Sum_probs=131.8

Q ss_pred             CeEEEEEcCCCCE-EEEEeCC---CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEE-eCC--CcEEEEeCCCC
Q 003842          514 KVICCHFSSDGKL-LATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFD--KTVRVWDADNP  586 (792)
Q Consensus       514 ~V~~lafspdg~~-Lasgs~D---g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~D--g~V~IWdl~s~  586 (792)
                      .+....|+|||+. ++..+.+   ..|+++|+.+++...... ..+.+....|+|||+.|+.. +.+  ..|+++|+.+ 
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~-  266 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT-  266 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC-
Confidence            7788999999985 6654443   469999998887655443 55566778999999876654 333  4577778765 


Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC--cEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcC------
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE------  658 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~d------  658 (792)
                      +. .+.+..+........|+|||+.++++....+  .|+++|+.+++..+....+.....|+|+++.++.....      
T Consensus       267 g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~  345 (419)
T PRK04043        267 KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFG  345 (419)
T ss_pred             Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccC
Confidence            33 4445544444456789999998888876555  58888888887755543332346899999999887753      


Q ss_pred             ---CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCC
Q 003842          659 ---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGS  709 (792)
Q Consensus       659 ---g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s  709 (792)
                         ..|.++|+.++.... +... .......|+|||+.|+..+..    .+.++++..
T Consensus       346 ~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        346 KNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence               378889998886543 3322 233358899999987766543    466666643

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=3.8e-08  Score=110.85  Aligned_cols=208  Identities=15%  Similarity=0.169  Sum_probs=150.6

Q ss_pred             cceeeeeeeecCCCCeEEEEEcCCC------------CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECC---
Q 003842          500 FSFKEANSVRASTSKVICCHFSSDG------------KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP---  564 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~V~~lafspdg------------~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp---  564 (792)
                      .+++.+..+.-|...|+.+.|.|-.            -+||++...|.|.|||+..+..+..+..|.+.|.+++|-+   
T Consensus        43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd  122 (1062)
T KOG1912|consen   43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD  122 (1062)
T ss_pred             hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence            3445666777888889999887621            2678888899999999999999999999999999999977   


Q ss_pred             CC-CeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-------CeeEEEe
Q 003842          565 SM-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-------GSCTRVF  636 (792)
Q Consensus       565 dg-~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-------~~~~~~~  636 (792)
                      +. ..|++-....+|.+|+.++ +..+..+........|+.+.|-+..-|+.-+..|.|.+-+.-.       ++...+-
T Consensus       123 ~Srd~LlaIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~  201 (1062)
T KOG1912|consen  123 DSRDVLLAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT  201 (1062)
T ss_pred             cchheeEEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence            33 3667777788899999998 5556555555566778999887666666666677777665421       1111111


Q ss_pred             eC--------------------C--------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc
Q 003842          637 KG--------------------G--------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD  688 (792)
Q Consensus       637 ~~--------------------~--------~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~s  688 (792)
                      ..                    +        ...++|+|.-+.++.......+.|+|++-..++....-..+.+.-+.|-
T Consensus       202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl  281 (1062)
T KOG1912|consen  202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL  281 (1062)
T ss_pred             cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence            00                    0        1125678988889999999999999999888877766556666667777


Q ss_pred             CCCC--EEEEEeCC-eEEEEECC
Q 003842          689 PSGE--LLASVSED-SVRVWTVG  708 (792)
Q Consensus       689 pdg~--~Las~s~d-~I~IwDl~  708 (792)
                      |+++  .|++...| .+.||--+
T Consensus       282 P~~~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  282 PDPRRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             cCCCcceEEEEecCCeEEEEEee
Confidence            7654  67777766 77777544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.06  E-value=7.5e-10  Score=133.46  Aligned_cols=224  Identities=14%  Similarity=0.225  Sum_probs=166.0

Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      .++.+-..|.|+.-+|...+.++|+.||.|++|....+..+..++ .....|+.+.|+..|+.+..+..||.+.+|.+. 
T Consensus      2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred             EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence            355667788999889988899999999999999999888887776 234889999999999999999999999999997 


Q ss_pred             CCceeEEecccCCCeEEEEEcCCCCeEEEEEe---CCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEE
Q 003842          586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVS  662 (792)
Q Consensus       586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs---~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~  662 (792)
                       .++......|.....++.|..   .++++++   .++.+.+||......                              
T Consensus      2282 -pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~------------------------------ 2327 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPM------------------------------ 2327 (2439)
T ss_pred             -CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcc------------------------------
Confidence             567788889999999998875   3455543   356777777532110                              


Q ss_pred             EEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003842          663 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI  741 (792)
Q Consensus       663 i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sg  741 (792)
                            ..++.  ..|.+.++++++.|...+|++|+.+ .|++||++..   ..++.+..         ++ ...+|+++
T Consensus      2328 ------~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr---ql~h~~~~---------~~-~~~~f~~~ 2386 (2439)
T KOG1064|consen 2328 ------NSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR---QLRHTFQA---------LD-TREYFVTG 2386 (2439)
T ss_pred             ------cceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH---HHHHHhhh---------hh-hhheeecc
Confidence                  01122  4588999999999999999999998 9999999754   33433332         44 56689999


Q ss_pred             EcCCeEEEEECCCCcEEEEc----ccCCC--e--EEEEEeCCCCEEEEEeCCCc
Q 003842          742 GCYQSLELWNMSENKTMTLT----AHEGL--I--AALAVSTETGYVASASHDKF  787 (792)
Q Consensus       742 s~dg~I~IwDl~~~~~~~~~----~h~~~--V--~sl~fspdg~~LaSgs~DG~  787 (792)
                      +..|.|+||++.....+...    +|.+.  +  .-+... -+..|.+|+.||+
T Consensus      2387 ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2387 SSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred             CcccceEEEEccccchhhcCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence            99999999999887655211    22221  1  112222 2456778888874

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.06  E-value=8.8e-10  Score=132.89  Aligned_cols=208  Identities=17%  Similarity=0.288  Sum_probs=162.4

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC----Cee
Q 003842          566 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTA  641 (792)
Q Consensus       566 g~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~  641 (792)
                      +..+..+..++.+.-|..+..+   ..++.+-..|.++.-||...+++ +|+.||.|++|....+..+..+..    .+.
T Consensus      2180 s~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred             cccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence            3445555556666666655322   22334556788888899877666 999999999999998887776642    355


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe---CC-eEEEEECCCCCCcceEE
Q 003842          642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS---ED-SVRVWTVGSGSEGECVH  717 (792)
Q Consensus       642 ~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s---~d-~I~IwDl~s~~~~~~i~  717 (792)
                      .++|+..|+.+-++..||.+.+|... .++......|......+.|-.  ..+++.+   ++ .+.+||..-.....+++
T Consensus      2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred             hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence            68899999999999999999999987 677778888999999888876  5566554   33 89999987654445565


Q ss_pred             EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          718 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       718 ~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                        .+|...++++++-|....|++|+.+|.|++||++-.+.+ .+..         ++ ...+|++|+..|.|+||+
T Consensus      2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred             --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence              789999999999999999999999999999999877655 2222         44 567899999999999996

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.03  E-value=3.4e-08  Score=99.08  Aligned_cols=246  Identities=9%  Similarity=-0.005  Sum_probs=165.6

Q ss_pred             CCeEEEEECCCCc--eeEEeccCCCCEEEEEECC-----CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEE
Q 003842          533 DKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF  605 (792)
Q Consensus       533 Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fsp-----dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~f  605 (792)
                      ...|.+|++.+..  .+..+       +.+.|.|     ...+||.|+.-|...+|...+..........|...|+-+.=
T Consensus        51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r  123 (344)
T KOG4532|consen   51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR  123 (344)
T ss_pred             eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence            3457777765433  22222       2344544     34489999999999999998755555555555554433322


Q ss_pred             cCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-e-EEE-EecCCC
Q 003842          606 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-A-CRL-SLQGHT  679 (792)
Q Consensus       606 spd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~-~-~~~-~l~~h~  679 (792)
                      ..+...-+..++.|.++++.+++-+.......   -....+.+++++.+.++.+....|..|.+... + .+. .....+
T Consensus       124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~  203 (344)
T KOG4532|consen  124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS  203 (344)
T ss_pred             hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence            22333334578889999999887655443332   23677899999999999999999999988654 2 233 233344


Q ss_pred             CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc--eEEEeecCCCceEEEEEeCCCC--EEEEEEcCCeEEEEECCC
Q 003842          680 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE--CVHELSCNGNKFHSCVFHPTYP--SLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       680 ~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~--~i~~~~~~~~~i~si~fspdg~--~L~sgs~dg~I~IwDl~~  754 (792)
                      ..-.+..|+.....+|++..| ++.|||++......  .-..-..|.+.+..|.|++.|.  .|+..-.-+.+.+.|+++
T Consensus       204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            556788999999999999999 99999998764322  1223345788899999998664  455555557899999998


Q ss_pred             CcEE--------EEcccCC-CeEEEEEeCCCCEEEEEeCC
Q 003842          755 NKTM--------TLTAHEG-LIAALAVSTETGYVASASHD  785 (792)
Q Consensus       755 ~~~~--------~~~~h~~-~V~sl~fspdg~~LaSgs~D  785 (792)
                      ++-.        .+..|.. .|..-.|+.++.-+.+.+++
T Consensus       284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             CceeeEEecCccccccccccccccccccCCCcccccccch
Confidence            8644        1223333 38888888887766665554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.03  E-value=4.6e-07  Score=110.90  Aligned_cols=254  Identities=14%  Similarity=0.196  Sum_probs=164.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC---C---CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC---CCcEEEE
Q 003842          511 STSKVICCHFSSDGKLLATGGH---D---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVW  581 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs~---D---g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~---Dg~V~IW  581 (792)
                      +.+.-..|+|-.||.|+|+.+.   +   ..|+||+-+ |....+-+.-.+--.+++|.|.|++||+.-.   ...|.+|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence            5667789999999999999874   2   579999976 6655555544555568899999999998864   3457777


Q ss_pred             eCCCCCceeEEe----cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE----ee--CCeeEEEEecCCCE
Q 003842          582 DADNPGYSLRTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FK--GGTAQMRFQPHLGR  651 (792)
Q Consensus       582 dl~s~~~~i~~~----~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~--~~~~~v~~sp~~~~  651 (792)
                      .-+  +.....|    ......|..|.|++++.. |+....|. |.+|-..+......    +.  .....+.|+|....
T Consensus       287 ErN--GLrhgeF~l~~~~~~~~v~~l~Wn~ds~i-LAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~  362 (928)
T PF04762_consen  287 ERN--GLRHGEFTLRFDPEEEKVIELAWNSDSEI-LAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL  362 (928)
T ss_pred             ecC--CcEeeeEecCCCCCCceeeEEEECCCCCE-EEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence            655  3222222    234567999999999764 44544444 99999887763322    21  22344888887654


Q ss_pred             -EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc----CCCC-EEEEEeCCeEEEEECCCCCCc--ceEEEeecCC
Q 003842          652 -YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD----PSGE-LLASVSEDSVRVWTVGSGSEG--ECVHELSCNG  723 (792)
Q Consensus       652 -lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~s----pdg~-~Las~s~d~I~IwDl~s~~~~--~~i~~~~~~~  723 (792)
                       +.+.+.+|.+..++..               +.++.+    |+.. .+++...+.+++-.++...-+  .+...+.. .
T Consensus       363 ~L~v~t~~g~~~~~~~~---------------~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~-~  426 (928)
T PF04762_consen  363 RLHVLTSNGQYEIYDFA---------------WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL-P  426 (928)
T ss_pred             EEEEEecCCcEEEEEEE---------------EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC-C
Confidence             5555555777666542               112222    2222 344444447888777654332  23344443 4


Q ss_pred             CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---------EEc----------ccCCCeEEEEEeCCCCEEEEEeC
Q 003842          724 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---------TLT----------AHEGLIAALAVSTETGYVASASH  784 (792)
Q Consensus       724 ~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~---------~~~----------~h~~~V~sl~fspdg~~LaSgs~  784 (792)
                      ..|..++|++++..+++...||.|.+|........         .+.          .....+..++|..+..+++....
T Consensus       427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (928)
T PF04762_consen  427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDS  506 (928)
T ss_pred             CCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEec
Confidence            67999999999988999999999999985432211         111          12345778888877776666555


Q ss_pred             C
Q 003842          785 D  785 (792)
Q Consensus       785 D  785 (792)
                      +
T Consensus       507 ~  507 (928)
T PF04762_consen  507 D  507 (928)
T ss_pred             C
Confidence            4

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.03  E-value=2.3e-10  Score=129.32  Aligned_cols=262  Identities=16%  Similarity=0.203  Sum_probs=181.0

Q ss_pred             ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC--cE
Q 003842          501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TV  578 (792)
Q Consensus       501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg--~V  578 (792)
                      .|+.+++|+.|+...+|++|+-+.++|++|+..|.|++|++.+|.......+|...|+.|.-+.+|..+++.+.-.  ..
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            5678889999999999999999999999999999999999999999999999999999999999999877765443  47


Q ss_pred             EEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-eC------CeeEEEEecCCCE
Q 003842          579 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KG------GTAQMRFQPHLGR  651 (792)
Q Consensus       579 ~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~------~~~~v~~sp~~~~  651 (792)
                      .+|++.+......+|.    .-.++.|+.....-+ .|.......+||+.++..+.++ .+      ..++..|+|.+..
T Consensus      1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             HHhccccccCcccccc----ccceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            8999987555555554    345778875533223 4555567899999998766553 21      2356779998776


Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 003842          652 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF  731 (792)
Q Consensus       652 lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~f  731 (792)
                      ++-   ||  .+||++....++.|......+ .-.|+|.|.-++..+    .|||+++.   +.++.+..  -.-..+.|
T Consensus      1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS----EIwD~RTF---~lLh~VP~--Ldqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS----EIWDMRTF---KLLHSVPS--LDQCAVTF 1309 (1516)
T ss_pred             Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec----hhhhhHHH---HHHhcCcc--ccceEEEe
Confidence            663   33  479999887777766544333 335999999888765    48999876   33333221  11234566


Q ss_pred             eCCCCEEEEEEc--C---------------CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE
Q 003842          732 HPTYPSLLVIGC--Y---------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASA  782 (792)
Q Consensus       732 spdg~~L~sgs~--d---------------g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSg  782 (792)
                      +..|..++..-.  |               ...+-||......+........|..++-++...+|+..
T Consensus      1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred             ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence            666665443320  0               12344444444444444445556666666666666543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.96  E-value=1.5e-08  Score=104.83  Aligned_cols=244  Identities=12%  Similarity=0.208  Sum_probs=170.4

Q ss_pred             CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE-ecccCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003842          544 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEI  622 (792)
Q Consensus       544 ~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~-~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I  622 (792)
                      ...+..+++|.+.|++...-|...-+++.+.|.+++||--++.+..... .......++++.+.++.. .|+.|-..|++
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtv   92 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTV   92 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceE
Confidence            3456678899999999999998889999999999999976654433222 223457788999988854 55588889999


Q ss_pred             EEEEcCCC----eeEEEe---eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEE
Q 003842          623 RYWSINNG----SCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA  695 (792)
Q Consensus       623 ~iwdl~~~----~~~~~~---~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~La  695 (792)
                      .-+.+...    ...+.+   ...+..+.|+.....+++.+.|..+.-.-.+.+..+..+.- ...-+++.|+-.  +..
T Consensus        93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~f  169 (404)
T KOG1409|consen   93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAF  169 (404)
T ss_pred             EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEE
Confidence            98876532    222222   23456677777778888888887766555555433221110 001111111111  222


Q ss_pred             EEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE--EEEcccCCCeEEEEE
Q 003842          696 SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT--MTLTAHEGLIAALAV  772 (792)
Q Consensus       696 s~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~--~~~~~h~~~V~sl~f  772 (792)
                      .|... .|.+-.+.. .....+..+.+|...+.+++|.+....|++|..|..|.+||+..++-  ..+.+|...|..+..
T Consensus       170 vGd~~gqvt~lr~~~-~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~  248 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQ-NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY  248 (404)
T ss_pred             ecccccceEEEEEee-cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence            23222 333333321 22367888999999999999999999999999999999999976554  478899999999998


Q ss_pred             eCCCCEEEEEeCCCcEEEeC
Q 003842          773 STETGYVASASHDKFVKLWK  792 (792)
Q Consensus       773 spdg~~LaSgs~DG~I~IWd  792 (792)
                      .+--+.|+++++||.|.+|+
T Consensus       249 ~~~t~~l~S~~edg~i~~w~  268 (404)
T KOG1409|consen  249 AQHTRQLISCGEDGGIVVWN  268 (404)
T ss_pred             hhhheeeeeccCCCeEEEEe
Confidence            88888999999999999996

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=6.4e-08  Score=109.01  Aligned_cols=236  Identities=16%  Similarity=0.209  Sum_probs=155.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCC------------CeEEEEeCCCcEEEE
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM------------PRLATSSFDKTVRVW  581 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg------------~~Lasgs~Dg~V~IW  581 (792)
                      .-.++.|++.| +||.|+. ..|.|.|..+.+.+..++.|...|+.|.|.|..            -+||++...|.|.||
T Consensus        17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            36778899988 7888864 478899999999999999999999999998721            157778888999999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCC---CCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcC
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd---~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~d  658 (792)
                      |... ...+..+..|..+|..++|.+.   ..+++++-....+|.+|+..+|+.+..+..                    
T Consensus        95 d~~~-~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y--------------------  153 (1062)
T KOG1912|consen   95 DFVL-ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY--------------------  153 (1062)
T ss_pred             Eehh-hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc--------------------
Confidence            9987 6667778888899999999653   335555555667777777777766554432                    


Q ss_pred             CeEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCC-EEEEEeCCeEEEEECC-CCCC---cceEEEeecCC---------
Q 003842          659 NVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGE-LLASVSEDSVRVWTVG-SGSE---GECVHELSCNG---------  723 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp-dg~-~Las~s~d~I~IwDl~-s~~~---~~~i~~~~~~~---------  723 (792)
                                         ......|+.++| |.+ +.+.++.+.+.+-+.- ..+.   .+.+.....|.         
T Consensus       154 -------------------s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~  214 (1062)
T KOG1912|consen  154 -------------------SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERET  214 (1062)
T ss_pred             -------------------CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhh
Confidence                               122223333333 112 1222222222222211 1000   01110000000         


Q ss_pred             -------------C---ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-EcccCCCeEEEEEeCCC--CEEEEEeC
Q 003842          724 -------------N---KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-LTAHEGLIAALAVSTET--GYVASASH  784 (792)
Q Consensus       724 -------------~---~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-~~~h~~~V~sl~fspdg--~~LaSgs~  784 (792)
                                   .   ....++|+|..+.++.......+.|+|++-..++. +.-..+.+.-+.|-|+.  ..|++.-.
T Consensus       215 at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~  294 (1062)
T KOG1912|consen  215 ATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHS  294 (1062)
T ss_pred             hccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEec
Confidence                         0   02335789999989888889999999999888773 33344556667777765  46888999


Q ss_pred             CCcEEEe
Q 003842          785 DKFVKLW  791 (792)
Q Consensus       785 DG~I~IW  791 (792)
                      ||.+.||
T Consensus       295 nG~ltir  301 (1062)
T KOG1912|consen  295 NGRLTIR  301 (1062)
T ss_pred             CCeEEEE
Confidence            9999998

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.93  E-value=3.2e-06  Score=88.58  Aligned_cols=215  Identities=18%  Similarity=0.197  Sum_probs=141.3

Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEEC-CCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003842          516 ICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS-PSMPRLATSSFDKTVRVWDADNPGYSLRTF  593 (792)
Q Consensus       516 ~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fs-pdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~  593 (792)
                      .+++|.+ ++.++++....+.|+.|+..+++... +....  ...+++. ++ ..|+++..++ +.++|+.+ +.....+
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~-g~~~~~~   76 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDT-GKVTVLA   76 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTT-TEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCC-CcEEEEe
Confidence            3678998 77777777788999999998876543 22222  6677777 56 4566666555 56669876 3222222


Q ss_pred             cc-----cCCCeEEEEEcCCCCeEEEEEeCC--------CcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEE-c
Q 003842          594 MG-----HSASVMSLDFHPNKDDLICSCDGD--------GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAA-A  657 (792)
Q Consensus       594 ~~-----h~~~V~sl~fspd~~~ll~sgs~D--------g~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s-~  657 (792)
                      ..     .....+++++.++|+ ++++....        |.|..++.. ++......  ...+.++|+++++.++++. .
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred             eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccc
Confidence            21     345688999999987 44454432        568888877 55444433  3456799999999887655 4


Q ss_pred             CCeEEEEECCC--C-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEE
Q 003842          658 ENVVSILDAET--Q-----ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC  729 (792)
Q Consensus       658 dg~I~i~D~~t--~-----~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si  729 (792)
                      .+.|..||+..  .     +....+....+....++++.+|+++++.... .|.++|.. +   +.+..+......+++|
T Consensus       155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~  230 (246)
T PF08450_consen  155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNC  230 (246)
T ss_dssp             TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEE
T ss_pred             cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEE
Confidence            78899999853  2     1122233223347889999999987776655 99999976 4   5666666665689999


Q ss_pred             EEe-CCCCEEEEEE
Q 003842          730 VFH-PTYPSLLVIG  742 (792)
Q Consensus       730 ~fs-pdg~~L~sgs  742 (792)
                      +|. ++.+.|++.+
T Consensus       231 ~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  231 AFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEESTTSSEEEEEE
T ss_pred             EEECCCCCEEEEEe
Confidence            994 6777777654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.93  E-value=4.7e-07  Score=93.87  Aligned_cols=213  Identities=15%  Similarity=0.048  Sum_probs=138.0

Q ss_pred             CCeEEEEECCCCceeEEeccC--CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCC
Q 003842          533 DKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD  610 (792)
Q Consensus       533 Dg~I~vWdl~t~~~~~~l~~h--~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~  610 (792)
                      +|.|..||..+++.+......  .....+. ..+++.++++++.++.|+.||..+ ++.+..+.. ...+....... +.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~-~~~~~~~~~~~-~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKT-GKVLWRFDL-PGPISGAPVVD-GG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTT-SEEEEEEEC-SSCGGSGEEEE-TT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCC-CCEEEEeec-cccccceeeec-cc
Confidence            688999999999988887531  1222211 223566888889999999999988 555555443 22211111222 23


Q ss_pred             eEEEEEeCCCcEEEEEcCCCeeEEEe-eCC------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC--
Q 003842          611 DLICSCDGDGEIRYWSINNGSCTRVF-KGG------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP--  681 (792)
Q Consensus       611 ~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~~------~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~--  681 (792)
                      .+ +.+..++.|+.+|..+++.+..+ ...      .........++.++++..++.|..+|.++++.+.........  
T Consensus        78 ~v-~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~  156 (238)
T PF13360_consen   78 RV-YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS  156 (238)
T ss_dssp             EE-EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred             cc-ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence            34 45557889999999999998874 321      122334444788999999999999999999998888664422  


Q ss_pred             --------eEEEEEcCCCCEEEEEeCC-e-EEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003842          682 --------IDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN  751 (792)
Q Consensus       682 --------V~sv~~spdg~~Las~s~d-~-I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwD  751 (792)
                              +.+-....++ .++.++.+ . +.+ |+.+++   .+....  ...+.. ....++..|++++.++.|.+||
T Consensus       157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~---~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d  228 (238)
T PF13360_consen  157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGE---KLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALD  228 (238)
T ss_dssp             --EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTE---EEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred             cceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCC---EEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence                    1222233345 55555555 4 555 998873   333222  222222 2457788888888999999999


Q ss_pred             CCCCcEE
Q 003842          752 MSENKTM  758 (792)
Q Consensus       752 l~~~~~~  758 (792)
                      +++++.+
T Consensus       229 ~~tG~~~  235 (238)
T PF13360_consen  229 LKTGKVV  235 (238)
T ss_dssp             TTTTEEE
T ss_pred             CCCCCEE
Confidence            9999875

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.91  E-value=3.1e-06  Score=88.70  Aligned_cols=215  Identities=9%  Similarity=0.059  Sum_probs=138.7

Q ss_pred             EEEEECC-CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEc-CCCCeEEEEEeCCCcEEEEEcCCCeeEEE
Q 003842          558 TDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH-PNKDDLICSCDGDGEIRYWSINNGSCTRV  635 (792)
Q Consensus       558 ~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fs-pd~~~ll~sgs~Dg~I~iwdl~~~~~~~~  635 (792)
                      .+++|.+ ++.++++-...+.|+.|+..+..  ...+....  ...+++. ++ ..++ .+.. +.+.++|+.+++....
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~--~~~~~~~~--~~G~~~~~~~-g~l~-v~~~-~~~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGE--VEVIDLPG--PNGMAFDRPD-GRLY-VADS-GGIAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTE--EEEEESSS--EEEEEEECTT-SEEE-EEET-TCEEEEETTTTEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCe--EEEEecCC--CceEEEEccC-CEEE-EEEc-CceEEEecCCCcEEEE
Confidence            3578888 66667777778999999998732  22222222  6778887 55 4455 4443 5566669998876544


Q ss_pred             eeC--------CeeEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003842          636 FKG--------GTAQMRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE  699 (792)
Q Consensus       636 ~~~--------~~~~v~~sp~~~~lla~s~d--------g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~  699 (792)
                      +..        ..+.+++.++++.+++....        |.|+.++.. ++...... .-...+.|+|+|+++.|+.+..
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred             eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence            332        24568899998855555442        568888888 55443333 2355789999999997775554


Q ss_pred             C--eEEEEECCCCCC-c---ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEE
Q 003842          700 D--SVRVWTVGSGSE-G---ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAV  772 (792)
Q Consensus       700 d--~I~IwDl~s~~~-~---~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~f  772 (792)
                      .  .|..|++..... .   ..+..+.........+++..+|+.+++....+.|.++|.+ ++.+ .+......+++++|
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence            4  888888864322 1   2222333333458889999999987777788999999988 6655 34333458999999


Q ss_pred             e-CCCCEEEEE
Q 003842          773 S-TETGYVASA  782 (792)
Q Consensus       773 s-pdg~~LaSg  782 (792)
                      . ++.+.|+..
T Consensus       233 gg~~~~~L~vT  243 (246)
T PF08450_consen  233 GGPDGKTLYVT  243 (246)
T ss_dssp             ESTTSSEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            4 565555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.91  E-value=5.7e-07  Score=101.15  Aligned_cols=252  Identities=11%  Similarity=0.013  Sum_probs=155.2

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCe---
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV---  600 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V---  600 (792)
                      +..++.++.+|.|+.+|.++|+.+-..............  .+..+++++.++.|+.+|..+ ++.+..+......+   
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~~  196 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESD-GAVKWTVNLDVPSLTLR  196 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccC-CCEeeeecCCCCccccc
Confidence            457778888999999999999988777643321111112  244677788899999999988 55554443211100   


Q ss_pred             --EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe----------eEEEEec--CCCEEEEEEcCCeEEEEEC
Q 003842          601 --MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----------AQMRFQP--HLGRYLAAAAENVVSILDA  666 (792)
Q Consensus       601 --~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----------~~v~~sp--~~~~lla~s~dg~I~i~D~  666 (792)
                        .+....  +. .++.++.+|.+..+|..+++.+..+....          ..+..+|  .++.+++++.++.+..+|.
T Consensus       197 ~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~  273 (394)
T PRK11138        197 GESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL  273 (394)
T ss_pred             CCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence              111111  22 34467779999999999988765543110          0011111  3577888888999999999


Q ss_pred             CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC-CCceEEEEEeCCCCEEEEEEcC
Q 003842          667 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCY  744 (792)
Q Consensus       667 ~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~-~~~i~si~fspdg~~L~sgs~d  744 (792)
                      .+++.+......  ....+..  .+..|+.++.+ .+..+|..+++   .+...... .....+.++  .+.+|++++.+
T Consensus       274 ~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~  344 (394)
T PRK11138        274 RSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVL--YNGYLVVGDSE  344 (394)
T ss_pred             CCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEE--ECCEEEEEeCC
Confidence            999887665421  1112222  34556666656 99999998773   33222111 111222222  25678899999


Q ss_pred             CeEEEEECCCCcEEE-EcccCCCeE-EEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          745 QSLELWNMSENKTMT-LTAHEGLIA-ALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       745 g~I~IwDl~~~~~~~-~~~h~~~V~-sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |.|+++|..+++.+. .......+. ...+  .+..|+.++.||.|+.++
T Consensus       345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence            999999999999873 322222232 2233  244788889999998764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=1.9e-08  Score=111.96  Aligned_cols=230  Identities=16%  Similarity=0.191  Sum_probs=164.7

Q ss_pred             CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc--------------eeEEecccCCCeEEEEEcCCCCeEEEEEeC
Q 003842          553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY--------------SLRTFMGHSASVMSLDFHPNKDDLICSCDG  618 (792)
Q Consensus       553 h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~--------------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~  618 (792)
                      ......|+.|+.+..+|++|+.||.++|..+.+...              .-.++.+|...|.-+.|+.... -+.+.+.
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt   91 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTSDT   91 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-cccccCC
Confidence            345688999999999999999999999998875221              1246679999999999998755 4558889


Q ss_pred             CCcEEEEEcCCCeeEEE-----eeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE-EEecCCCCCeEEEEEcCCCC
Q 003842          619 DGEIRYWSINNGSCTRV-----FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR-LSLQGHTKPIDSVCWDPSGE  692 (792)
Q Consensus       619 Dg~I~iwdl~~~~~~~~-----~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~-~~l~~h~~~V~sv~~spdg~  692 (792)
                      +|.|.+|-+-.+.....     -+..+.+++|..+|.++..+..||.|.|=.++..+.- +.+++  .-...+.|++|.+
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~  169 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLE  169 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHH
Confidence            99999999887764332     2345678999999999999999999988777654322 11222  2244688999998


Q ss_pred             EEEEEeCC-eEEEEECCCCCC----cceE----EEeecCCCceEEEEE--------eCCCCEEEEEEcCCeEEEEECCCC
Q 003842          693 LLASVSED-SVRVWTVGSGSE----GECV----HELSCNGNKFHSCVF--------HPTYPSLLVIGCYQSLELWNMSEN  755 (792)
Q Consensus       693 ~Las~s~d-~I~IwDl~s~~~----~~~i----~~~~~~~~~i~si~f--------spdg~~L~sgs~dg~I~IwDl~~~  755 (792)
                      .++.+-.+ .+.+||....-.    ..+.    ..+......|..+.|        -||.+.|+++-..|.+.|..-.+.
T Consensus       170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND  249 (1189)
T KOG2041|consen  170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND  249 (1189)
T ss_pred             HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence            77777666 899998753211    1111    112222334555665        358889999999999988765444


Q ss_pred             cEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003842          756 KTMTLTAHEGLIAALAVSTETGYVASASHD  785 (792)
Q Consensus       756 ~~~~~~~h~~~V~sl~fspdg~~LaSgs~D  785 (792)
                      ..-.+....-.|..+.|+++|..||.||.|
T Consensus       250 ~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  250 PEPVVVDTGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             CCCeEEecccEeecceecCCCcEEEEccCc
Confidence            333333334678899999999999999865

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.90  E-value=4.3e-09  Score=117.53  Aligned_cols=217  Identities=20%  Similarity=0.294  Sum_probs=156.3

Q ss_pred             ceeccCCcceeeeeeeecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-eeEEeccCCCCEEEEEECCCCCeEE
Q 003842          493 GMDVSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRLA  570 (792)
Q Consensus       493 ~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t~~-~~~~l~~h~~~V~~i~fspdg~~La  570 (792)
                      +|.+.+...-..-..+.+|...|+.+.|.+.. ..||+++.|-.|..||+.+.. .+..+..-...-..|+|+.....+.
T Consensus        95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl  174 (1081)
T KOG0309|consen   95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL  174 (1081)
T ss_pred             hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchh
Confidence            45555554445556788999999999999844 589999999999999998754 3444444455667899998666777


Q ss_pred             EEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE----eeCCeeEEEEe
Q 003842          571 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTAQMRFQ  646 (792)
Q Consensus       571 sgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~~~~~~v~~s  646 (792)
                      +.+....|+|||++.++.++..+++|...|+.++|.......+.+++.|++|++||.........    .+.++..-++.
T Consensus       175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~  254 (1081)
T KOG0309|consen  175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL  254 (1081)
T ss_pred             hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence            77778889999999988999999999999999999876556677999999999999876443221    12334444555


Q ss_pred             cCCCEEEEEEc--CCeEEE---------EECCC-CeEEEEecCCCCCeEEEEEcC--------CC--CEEEEEeCC-eEE
Q 003842          647 PHLGRYLAAAA--ENVVSI---------LDAET-QACRLSLQGHTKPIDSVCWDP--------SG--ELLASVSED-SVR  703 (792)
Q Consensus       647 p~~~~lla~s~--dg~I~i---------~D~~t-~~~~~~l~~h~~~V~sv~~sp--------dg--~~Las~s~d-~I~  703 (792)
                      |-+.-++.--.  +..|.+         |+..+ ..++++|.+|...|...-|-.        |.  --|++=+.| .++
T Consensus       255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr  334 (1081)
T KOG0309|consen  255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR  334 (1081)
T ss_pred             ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence            55443332221  223333         33333 367899999999887666643        21  258888999 999


Q ss_pred             EEECCC
Q 003842          704 VWTVGS  709 (792)
Q Consensus       704 IwDl~s  709 (792)
                      +|-+.+
T Consensus       335 lWpI~~  340 (1081)
T KOG0309|consen  335 LWPIDS  340 (1081)
T ss_pred             eeeccH
Confidence            998854

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.90  E-value=1.5e-06  Score=91.42  Aligned_cols=244  Identities=15%  Similarity=0.127  Sum_probs=162.3

Q ss_pred             eEEEEEcC-CCCEEEEEeCCCe-EEEEECCCCceeEEeccCCCCE--EEEEECCCCCeEEEEe-----CCCcEEEEeCCC
Q 003842          515 VICCHFSS-DGKLLATGGHDKK-AVLWHTDTLKSKTNLEEHSSLI--TDVRFSPSMPRLATSS-----FDKTVRVWDADN  585 (792)
Q Consensus       515 V~~lafsp-dg~~Lasgs~Dg~-I~vWdl~t~~~~~~l~~h~~~V--~~i~fspdg~~Lasgs-----~Dg~V~IWdl~s  585 (792)
                      ...++.+| ++..+|.+-.-|. ..+||..+++....+....+.-  -.-+|++||++|++.-     ..|.|-|||...
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            45678888 5556677766654 6789999999887776433322  2458999999999874     358899999996


Q ss_pred             CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003842          586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD  665 (792)
Q Consensus       586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D  665 (792)
                      ....+..|..|.-.-..|.+.||++.|++.   +|-|..- .++++                  .++=..+.+..+.+.|
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVA---NGGI~Th-pd~GR------------------~kLNl~tM~psL~~ld  144 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVA---NGGIETH-PDSGR------------------AKLNLDTMQPSLVYLD  144 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEE---cCCCccC-cccCc------------------eecChhhcCCceEEEe
Confidence            567788888888778889999999777644   2323211 00111                  1122233455667778


Q ss_pred             CCCCeEEEE--e--cCCCCCeEEEEEcCCCCEEEEEeCC--------eEEEEECCCCCCcceEE----EeecCCCceEEE
Q 003842          666 AETQACRLS--L--QGHTKPIDSVCWDPSGELLASVSED--------SVRVWTVGSGSEGECVH----ELSCNGNKFHSC  729 (792)
Q Consensus       666 ~~t~~~~~~--l--~~h~~~V~sv~~spdg~~Las~s~d--------~I~IwDl~s~~~~~~i~----~~~~~~~~i~si  729 (792)
                      ..+++.+..  +  ..|...|..+++..+|..++.+-..        -|.+++....  ...+.    ....-.+.+-+|
T Consensus       145 ~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSI  222 (305)
T PF07433_consen  145 ARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSI  222 (305)
T ss_pred             cCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEE
Confidence            888887766  3  2377789999999999877765321        2455544321  11111    112335679999


Q ss_pred             EEeCCCCEEEEEEcC-CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC
Q 003842          730 VFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH  784 (792)
Q Consensus       730 ~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~  784 (792)
                      +++.++.++++.+-. +.+.+||..+++.+....-. .+..++...++ ++++.+.
T Consensus       223 a~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  223 AADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-DACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             EEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-ceeeeeecCCc-eEEeCCC
Confidence            999999988777655 59999999999988544333 35667766666 6665543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.89  E-value=1.1e-08  Score=104.19  Aligned_cols=234  Identities=17%  Similarity=0.289  Sum_probs=145.6

Q ss_pred             CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc----eeEEecccC------------CCeEEEEEcCC-CCeEEEE
Q 003842          553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----SLRTFMGHS------------ASVMSLDFHPN-KDDLICS  615 (792)
Q Consensus       553 h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~----~i~~~~~h~------------~~V~sl~fspd-~~~ll~s  615 (792)
                      ....|+++.|...|.||++|...|.|.+|.-+....    .+..|.+|.            ..|..|.|..+ +..-++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            456799999999999999999999999998765331    122344443            34778888654 3334556


Q ss_pred             EeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEE--------c-CCeEEEEECCCCeEEEEecCCCCCeEEEE
Q 003842          616 CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA--------A-ENVVSILDAETQACRLSLQGHTKPIDSVC  686 (792)
Q Consensus       616 gs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s--------~-dg~I~i~D~~t~~~~~~l~~h~~~V~sv~  686 (792)
                      .+.|.+|++|.+........-......-.-+|.++-+.+..        . |..|..+     .+...-..|...|.++.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiNSiS  179 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHINSIS  179 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec-----cceeccccceeEeeeee
Confidence            77899999999976543222111111111112221111100        0 1111111     01111245888899999


Q ss_pred             EcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCC-----CceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCc----
Q 003842          687 WDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG-----NKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENK----  756 (792)
Q Consensus       687 ~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~-----~~i~si~fspdg-~~L~sgs~dg~I~IwDl~~~~----  756 (792)
                      |..|...++++.+=.|.+|++......-.+..++.+.     ..|++..|+|.. ..+...+..|.|++-|++...    
T Consensus       180 ~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn  259 (460)
T COG5170         180 FNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN  259 (460)
T ss_pred             ecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence            9999888876544499999987544333334444443     237888999965 556677778999999998322    


Q ss_pred             -EE----E--------EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          757 -TM----T--------LTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       757 -~~----~--------~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                       +.    .        +.+-...|..+.|+++|+||++-+ =-+|+|||
T Consensus       260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwD  307 (460)
T COG5170         260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWD  307 (460)
T ss_pred             chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEe
Confidence             11    1        112235788999999999998654 35799997

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=1.8e-08  Score=107.33  Aligned_cols=291  Identities=15%  Similarity=0.106  Sum_probs=186.6

Q ss_pred             CCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeEEecc--CCCCEEEEEE
Q 003842          486 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEE--HSSLITDVRF  562 (792)
Q Consensus       486 ~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~-Dg~I~vWdl~t~~~~~~l~~--h~~~V~~i~f  562 (792)
                      +.|+..+-|......-.+.++.++.|...|.+++.+-||.++++++. |..+++||+++...+.-++.  -.+.+.+ ..
T Consensus        27 SlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w-v~  105 (558)
T KOG0882|consen   27 SLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW-VT  105 (558)
T ss_pred             ecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE-ec
Confidence            34555566655544455677889999999999999999999999887 99999999988766543332  2222222 22


Q ss_pred             CCCC-C-eEEE-EeCCCcEEEEeCCCCCcee-EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC------Cee
Q 003842          563 SPSM-P-RLAT-SSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN------GSC  632 (792)
Q Consensus       563 spdg-~-~Las-gs~Dg~V~IWdl~s~~~~i-~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~------~~~  632 (792)
                      ++.. . .|++ .-.++.|.|+|-..+.... ..-.-|..+|.++.+.+.++. +++....|.|..|....      .+.
T Consensus       106 skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds-~vSiD~~gmVEyWs~e~~~qfPr~~l  184 (558)
T KOG0882|consen  106 SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS-AVSIDISGMVEYWSAEGPFQFPRTNL  184 (558)
T ss_pred             CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc-eeeccccceeEeecCCCcccCccccc
Confidence            3321 1 3333 3457889999987655333 333458999999999998764 44888889999999873      211


Q ss_pred             EEEe------------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 003842          633 TRVF------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED  700 (792)
Q Consensus       633 ~~~~------------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d  700 (792)
                      ...+            +....++.|+|++..+...+.|..|++++.++++.+..+......-.+   -+...        
T Consensus       185 ~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~---q~ks~--------  253 (558)
T KOG0882|consen  185 NFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQY---QPKSP--------  253 (558)
T ss_pred             cccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhh---ccccc--------
Confidence            1111            335677999999999999999999999999999988777642221111   11111        


Q ss_pred             eEEEEECCCCCCcceEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEE----------
Q 003842          701 SVRVWTVGSGSEGECVHELSCNG-NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA----------  769 (792)
Q Consensus       701 ~I~IwDl~s~~~~~~i~~~~~~~-~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~s----------  769 (792)
                       +.+-++.-+.....-+++..++ .....++|...+++|+.++--| |+|+++.++++....+....|.-          
T Consensus       254 -y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~  331 (558)
T KOG0882|consen  254 -YGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQ  331 (558)
T ss_pred             -cccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhh
Confidence             1111111111111112222222 2356778999999998887654 88899998887755543332221          


Q ss_pred             ----------------EEEeCCCCEEEEEeCCCcEEEe
Q 003842          770 ----------------LAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       770 ----------------l~fspdg~~LaSgs~DG~I~IW  791 (792)
                                      +.+-+|-.+++++-...++++|
T Consensus       332 k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  332 KSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             hccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence                            2244555566666666666665

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.84  E-value=3.3e-07  Score=92.14  Aligned_cols=197  Identities=11%  Similarity=0.059  Sum_probs=130.0

Q ss_pred             CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCC----CCeEEEEEeCCCcEEEEEcCCCeeEE-EeeCCeeEEE----E
Q 003842          575 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTR-VFKGGTAQMR----F  645 (792)
Q Consensus       575 Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd----~~~ll~sgs~Dg~I~iwdl~~~~~~~-~~~~~~~~v~----~  645 (792)
                      ...|.+|++.+..+.+..+.      ..+.|.|.    ...+|+.|+..|.+.+|...+..... ........+.    +
T Consensus        51 t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~  124 (344)
T KOG4532|consen   51 TISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY  124 (344)
T ss_pred             eeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence            34578888876443232222      23444432    23467788899999999998655332 2222222221    2


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCC
Q 003842          646 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN  724 (792)
Q Consensus       646 sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~  724 (792)
                      ......++.++.|.++++++++.+..........-.+.++.+++|++++++.++. .|..|.+....+............
T Consensus       125 cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D  204 (344)
T KOG4532|consen  125 CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD  204 (344)
T ss_pred             cccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC
Confidence            2223457778888888888877654433332222338899999999999999988 899999876543222223333444


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE------EEcccCCCeEEEEEeCCCC
Q 003842          725 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------TLTAHEGLIAALAVSTETG  777 (792)
Q Consensus       725 ~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~------~~~~h~~~V~sl~fspdg~  777 (792)
                      .-.+..|+.....+|++..||++.|||++.....      ....|.+.|..+.|++.|.
T Consensus       205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence            5567789999999999999999999999875433      3346899999999998553

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.83  E-value=7.5e-07  Score=100.19  Aligned_cols=255  Identities=10%  Similarity=0.077  Sum_probs=151.9

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccCCC--CEE-----EEEECC--CCCeEEEEeCCCcEEEEeCCCCCceeEEec
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS--LIT-----DVRFSP--SMPRLATSSFDKTVRVWDADNPGYSLRTFM  594 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~--~V~-----~i~fsp--dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~  594 (792)
                      +..+++++.+|.|..+|.++|+.+-.......  .+.     .+.-.|  ++..++.++.+|.++.+|.++ ++.+....
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~t-G~~~W~~~  147 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAED-GEVAWQTK  147 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCC-CCCccccc
Confidence            55777888889999999999988776543220  000     000011  355788888999999999988 44444443


Q ss_pred             ccCCCeEE-EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEE----Eec--CCCEEEEEEcCCeEEEEECC
Q 003842          595 GHSASVMS-LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR----FQP--HLGRYLAAAAENVVSILDAE  667 (792)
Q Consensus       595 ~h~~~V~s-l~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~----~sp--~~~~lla~s~dg~I~i~D~~  667 (792)
                      ... .+.+ ..+. + . .++.+..++.|..+|.++|+.+..+......+.    .+|  .++.+++++.++.+..+|..
T Consensus       148 ~~~-~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~  223 (394)
T PRK11138        148 VAG-EALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME  223 (394)
T ss_pred             CCC-ceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence            222 2222 2222 2 3 344677799999999999998877754321110    011  24568888889999999999


Q ss_pred             CCeEEEEecCCCC-------CeEEEEEcC--CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003842          668 TQACRLSLQGHTK-------PIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       668 t~~~~~~l~~h~~-------~V~sv~~sp--dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~  737 (792)
                      +++.+........       ....+..+|  .+..++.++.+ .+..+|..+++   .+......  ....+.  ..+..
T Consensus       224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~--~~~~~~--~~~~~  296 (394)
T PRK11138        224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ---IVWKREYG--SVNDFA--VDGGR  296 (394)
T ss_pred             CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---EEEeecCC--CccCcE--EECCE
Confidence            9987765432110       011111122  23445555555 89999998873   33322211  111122  24667


Q ss_pred             EEEEEcCCeEEEEECCCCcEEEEc-cc-CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          738 LLVIGCYQSLELWNMSENKTMTLT-AH-EGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       738 L~sgs~dg~I~IwDl~~~~~~~~~-~h-~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |++++.+|.|+.+|..+++.+... .. .....+..+  .+.+|+.++.||.|+++|
T Consensus       297 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld  351 (394)
T PRK11138        297 IYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN  351 (394)
T ss_pred             EEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence            888999999999999999876321 11 111222222  245677778888877654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=1.8e-08  Score=109.11  Aligned_cols=203  Identities=19%  Similarity=0.296  Sum_probs=143.9

Q ss_pred             eEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc------eeEEecccCCCeEEEEEcCCCCeEEEEEeCCC
Q 003842          547 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG  620 (792)
Q Consensus       547 ~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg  620 (792)
                      +..+.+|...|..|+-..+.+-+++++.|++|++|.++.++.      +..++..|+.+|.++.|..+.. .+++|  ||
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence            345678999999998888888999999999999999986442      4567889999999999998754 44454  99


Q ss_pred             cEEEEEcCCCeeEEEee-----CCeeEEEEec--CCCEEEEE-EcCCeEEEEECCCCeEEEEecC-----CCCCeEEEEE
Q 003842          621 EIRYWSINNGSCTRVFK-----GGTAQMRFQP--HLGRYLAA-AAENVVSILDAETQACRLSLQG-----HTKPIDSVCW  687 (792)
Q Consensus       621 ~I~iwdl~~~~~~~~~~-----~~~~~v~~sp--~~~~lla~-s~dg~I~i~D~~t~~~~~~l~~-----h~~~V~sv~~  687 (792)
                      .|.+||.--++.+....     +....+...+  +...++++ +.+.+|+++|.+..+....++.     ...-+++++.
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            99999987776554221     2223333333  33344555 4588999999999876666543     3355899999


Q ss_pred             cCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE-EECCCCc
Q 003842          688 DPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL-WNMSENK  756 (792)
Q Consensus       688 spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~I-wDl~~~~  756 (792)
                      .+.|++++.+-.+ +|.+.|.+++   +.+..+.........++ .|....++....|.++.| |...++.
T Consensus       885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence            9999999988766 9999999988   44544433332222222 244455666677777777 7665554

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=4.1e-07  Score=96.22  Aligned_cols=248  Identities=15%  Similarity=0.179  Sum_probs=147.2

Q ss_pred             EEEEECCCCceeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEE
Q 003842          536 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC  614 (792)
Q Consensus       536 I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~  614 (792)
                      |++.+..+.+....+..|...|.+++|+|..+ ++..++.+..|+|.|+++ ...+..+..+ ..+++++|.-+..++|+
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~-~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAY-NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheecc-CCceeeeeccCCcceeE
Confidence            55666666666667778899999999999777 889999999999999998 6667777766 78999999999999999


Q ss_pred             EEeCCCcEEEEEcCCCeeEE-Eee-----CCeeEE------EEecCCCEEEEEEcCCeEEEEECC----CCeEEEEecCC
Q 003842          615 SCDGDGEIRYWSINNGSCTR-VFK-----GGTAQM------RFQPHLGRYLAAAAENVVSILDAE----TQACRLSLQGH  678 (792)
Q Consensus       615 sgs~Dg~I~iwdl~~~~~~~-~~~-----~~~~~v------~~sp~~~~lla~s~dg~I~i~D~~----t~~~~~~l~~h  678 (792)
                      .|...|.|.|||++..+-.. .+.     .++..+      ...+.++.+++...+  +..|+..    ..-++..+. .
T Consensus       253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~  329 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-P  329 (463)
T ss_pred             EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-C
Confidence            99999999999998654221 111     112222      223333444433332  2333322    222222222 2


Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCC----eEEE----EECCCCCCcceEEEe-ecC-CCc------eEEEEEeCCCCEEEEE
Q 003842          679 TKPIDSVCWDPSGELLA-SVSED----SVRV----WTVGSGSEGECVHEL-SCN-GNK------FHSCVFHPTYPSLLVI  741 (792)
Q Consensus       679 ~~~V~sv~~spdg~~La-s~s~d----~I~I----wDl~s~~~~~~i~~~-~~~-~~~------i~si~fspdg~~L~sg  741 (792)
                      .+...++.+++..+.++ +.-.+    .++.    .|..++   ..+... ..+ +.+      -..+.-.++..+|+..
T Consensus       330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG---~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~  406 (463)
T KOG1645|consen  330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG---FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV  406 (463)
T ss_pred             CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC---ceeeeecccccCCcccccccccceeccccccEEEEe
Confidence            34444555555444333 32221    1111    111111   111100 011 111      1112223455555544


Q ss_pred             Ec-CCeEEEEECCCCcEEEEcccCCCeEEEEEeC--CCCEEEEEeCCCcEEEeC
Q 003842          742 GC-YQSLELWNMSENKTMTLTAHEGLIAALAVST--ETGYVASASHDKFVKLWK  792 (792)
Q Consensus       742 s~-dg~I~IwDl~~~~~~~~~~h~~~V~sl~fsp--dg~~LaSgs~DG~I~IWd  792 (792)
                      +. .+.+.+||..+.+.+.-..-..+|.+++...  .+.||++- .|..++||+
T Consensus       407 gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk  459 (463)
T KOG1645|consen  407 GDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL-TDDRVHIYK  459 (463)
T ss_pred             cCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhe-ecceEEEEe
Confidence            43 4699999999999886666668888887654  23466665 466788774

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.75  E-value=4.5e-08  Score=103.58  Aligned_cols=118  Identities=21%  Similarity=0.282  Sum_probs=88.5

Q ss_pred             EEEEcCCCCEEEE---EeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003842          517 CCHFSSDGKLLAT---GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF  593 (792)
Q Consensus       517 ~lafspdg~~Las---gs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~  593 (792)
                      ++.|..+...+.+   .+....+.+|....+.. ..+-+|-..+++|+|+||+.+|+++..|..|+|-.+......-..+
T Consensus       112 ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc  190 (390)
T KOG3914|consen  112 AISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC  190 (390)
T ss_pred             eeeeeeccceEEEEeecCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc
Confidence            3334443433333   44455566666665433 3445899999999999999999999999999998887633333445


Q ss_pred             cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee
Q 003842          594 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK  637 (792)
Q Consensus       594 ~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~  637 (792)
                      .||+..|..++..++  ++|++++.|++|++||+++++++..+.
T Consensus       191 lGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  191 LGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             cccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccc
Confidence            689999999999876  457799999999999999999886654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.74  E-value=6.2e-06  Score=84.53  Aligned_cols=226  Identities=18%  Similarity=0.174  Sum_probs=132.9

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEec---cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003842          517 CCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLE---EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR  591 (792)
Q Consensus       517 ~lafspdg~~Lasgs~Dg~I~vWdl~t~--~~~~~l~---~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~  591 (792)
                      .++.+.||++||+.- |..|.|=..++.  ..+.+..   ...-.=+.++|+||+.+||.+...|+|+|||+..  ..+.
T Consensus         2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g--~~lf   78 (282)
T PF15492_consen    2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG--SELF   78 (282)
T ss_pred             ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc--ceeE
Confidence            356788999888874 556666544321  1222222   2233456899999999999999999999999974  2232


Q ss_pred             Eecc-------cCCCeEEEEEcCCC-----CeEEEEEeCCCcEEEEEcCCC-----eeEEEe------eCCeeEEEEecC
Q 003842          592 TFMG-------HSASVMSLDFHPNK-----DDLICSCDGDGEIRYWSINNG-----SCTRVF------KGGTAQMRFQPH  648 (792)
Q Consensus       592 ~~~~-------h~~~V~sl~fspd~-----~~ll~sgs~Dg~I~iwdl~~~-----~~~~~~------~~~~~~v~~sp~  648 (792)
                      .+..       ....|..+.|.+..     ...|++-..+|.++-|-+..+     .....|      ..++..+.++|.
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence            2221       23557777775542     223445666888887776332     222222      357888999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCE--EEEEeCCe-------EEEEECCCCCCcceEEEe
Q 003842          649 LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL--LASVSEDS-------VRVWTVGSGSEGECVHEL  719 (792)
Q Consensus       649 ~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~--Las~s~d~-------I~IwDl~s~~~~~~i~~~  719 (792)
                      ...|++++....=      ++.    -.+....+++-..-.+..+  .++..++.       ..+|.+-+.   +.....
T Consensus       159 h~LLlVgG~~~~~------~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~  225 (282)
T PF15492_consen  159 HRLLLVGGCEQNQ------DGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQ  225 (282)
T ss_pred             CCEEEEeccCCCC------Ccc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce---eeeecc
Confidence            8888887763320      000    0011112222222111111  11122221       123333211   222222


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          720 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       720 ~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      ......|..+..+|||..|++...+|.|.+|++...+..
T Consensus       226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence            334677999999999999999999999999999887655

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.71  E-value=2.8e-06  Score=88.01  Aligned_cols=208  Identities=14%  Similarity=0.115  Sum_probs=130.6

Q ss_pred             CCcEEEEeCCCCCceeEEeccc--CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC--eeEEEEecCCC
Q 003842          575 DKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--TAQMRFQPHLG  650 (792)
Q Consensus       575 Dg~V~IWdl~s~~~~i~~~~~h--~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~--~~~v~~sp~~~  650 (792)
                      +|.|..||..+ ++.+....-.  .....+..+ ++++.++ +++.++.|+.||+.+|+.+..+...  .... ....++
T Consensus         2 ~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRT-GKELWSYDLGPGIGGPVATAV-PDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGG   77 (238)
T ss_dssp             TSEEEEEETTT-TEEEEEEECSSSCSSEEETEE-EETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETT
T ss_pred             CCEEEEEECCC-CCEEEEEECCCCCCCccceEE-EeCCEEE-EEcCCCEEEEEECCCCCEEEEeeccccccce-eeeccc
Confidence            68899999987 5555544321  122222222 2344444 6678999999999999988776632  1122 245567


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEe-cCCCC---CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc
Q 003842          651 RYLAAAAENVVSILDAETQACRLSL-QGHTK---PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK  725 (792)
Q Consensus       651 ~lla~s~dg~I~i~D~~t~~~~~~l-~~h~~---~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~  725 (792)
                      .+++++.++.|+.+|.++++.+..+ .....   .........++..++++..+ .|..+|++++   +.+.........
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~  154 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPR  154 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-
T ss_pred             ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCC
Confidence            8888889999999999999998884 32211   11222233347777777755 9999999888   555555443322


Q ss_pred             ----------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          726 ----------FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       726 ----------i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                                +..-.+..++ .+++++.++.+..+|+.+++.+. ......+..+ ...++..|++++.|+.|.+||
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d  228 (238)
T PF13360_consen  155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD  228 (238)
T ss_dssp             SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred             CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence                      1122222334 78888888864444999999763 2223333332 356777888888999999886

...

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=5.4e-07  Score=95.32  Aligned_cols=247  Identities=12%  Similarity=0.088  Sum_probs=150.5

Q ss_pred             CcceeeeeeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC-eEEEEeCCC
Q 003842          499 GFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDK  576 (792)
Q Consensus       499 ~~~~~~~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg  576 (792)
                      ..+|+....+.+|...|..++|||..+ +|..++.+.+|+|.|+++...+..+..+ ..+++++|.-|.. +|+.|-..|
T Consensus       180 ~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG  258 (463)
T KOG1645|consen  180 SHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNG  258 (463)
T ss_pred             cCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCc
Confidence            344555667889999999999999877 7888999999999999999999988888 8899999988654 788888899


Q ss_pred             cEEEEeCCCCCceeEEecc--cCCCeEEEEEcC------CCCeEEEEEeCCCcEEEEEcCCC----eeEEEeeCC--eeE
Q 003842          577 TVRVWDADNPGYSLRTFMG--HSASVMSLDFHP------NKDDLICSCDGDGEIRYWSINNG----SCTRVFKGG--TAQ  642 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~~~~~--h~~~V~sl~fsp------d~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~~~~--~~~  642 (792)
                      .|.|||++.....+..+.+  ...+|..|+.-+      .+. +++....  .+.+|++...    .++..++.+  ...
T Consensus       259 ~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cis  335 (463)
T KOG1645|consen  259 MVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPGICIS  335 (463)
T ss_pred             eEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCcceee
Confidence            9999999976655544443  223444444322      222 3322222  2455655422    222233322  333


Q ss_pred             EEEecCCCEEEEEEcCC--------eEEEEECCCCeEEEEec-CC-CCC------eEEEEEcCCCCEEEEEeCC--eEEE
Q 003842          643 MRFQPHLGRYLAAAAEN--------VVSILDAETQACRLSLQ-GH-TKP------IDSVCWDPSGELLASVSED--SVRV  704 (792)
Q Consensus       643 v~~sp~~~~lla~s~dg--------~I~i~D~~t~~~~~~l~-~h-~~~------V~sv~~spdg~~Las~s~d--~I~I  704 (792)
                      +.+.+..+.+++....+        .+.-.|.+++..+...+ .+ ...      -..+.-.++.++|+..+++  .+.+
T Consensus       336 mqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil  415 (463)
T KOG1645|consen  336 MQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELIL  415 (463)
T ss_pred             eeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEE
Confidence            44445446666655431        11112333443332221 11 110      0112223456777766666  8999


Q ss_pred             EECCCCCCcceEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECC
Q 003842          705 WTVGSGSEGECVHELSCNGNKFHSCVFHP-TYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       705 wDl~s~~~~~~i~~~~~~~~~i~si~fsp-dg~~L~sgs~dg~I~IwDl~  753 (792)
                      ||..++   ..+.++... .++..++... ++.-++..-.|..++||..+
T Consensus       416 ~D~~s~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  416 QDPHSF---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE  461 (463)
T ss_pred             eccchh---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence            999876   556655544 5666665443 44444444556678888654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.67  E-value=1.1e-08  Score=116.00  Aligned_cols=201  Identities=16%  Similarity=0.290  Sum_probs=148.3

Q ss_pred             CCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC-c
Q 003842          543 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-E  621 (792)
Q Consensus       543 t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg-~  621 (792)
                      ..+..++|..|....+|++|+-+.+.|++|+..|.|++|++.+ +.....+.+|...|+-|.-+.+|..++.+++... .
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccccccccccccccCCcceeeeeccccCch
Confidence            3456677888999999999999999999999999999999998 6677888899999999999999988886666555 6


Q ss_pred             EEEEEcCC-CeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-C---CCCCeEEEEEcCCCCEEEE
Q 003842          622 IRYWSINN-GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-G---HTKPIDSVCWDPSGELLAS  696 (792)
Q Consensus       622 I~iwdl~~-~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~-~---h~~~V~sv~~spdg~~Las  696 (792)
                      ..+|++.. +.....| ....++.|+.....-+.|+......+||+.++.++.++. +   ....-+++.|+|+.++|+-
T Consensus      1169 saLW~~~s~~~~~Hsf-~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF-DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred             HHHhccccccCccccc-cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence            78999875 2233333 345567777765556677777889999999987665532 1   2233467889999887764


Q ss_pred             EeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          697 VSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       697 ~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      -+    .+||++..   ..++.+.... ....-.|+|.|.-+++-+     .|||+++.+.+
T Consensus      1248 dG----vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1248 DG----VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred             Cc----eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence            32    58999876   3444333222 222347999998888754     68999887654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.65  E-value=2.7e-05  Score=78.51  Aligned_cols=255  Identities=14%  Similarity=0.101  Sum_probs=137.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEE
Q 003842          523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS  602 (792)
Q Consensus       523 dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~s  602 (792)
                      -|++++.|++.|.+++.++++|+....+.....--......+++..|+.|+.|++.+..|..+ ..++...+...+...+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG~~f~s  140 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVS  140 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEecccCCceecc
Confidence            467899999999999999999987776654333222334567888999999999999999998 5556655544443444


Q ss_pred             EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE--e--eCCeeE--EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003842          603 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--F--KGGTAQ--MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ  676 (792)
Q Consensus       603 l~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~--~~~~~~--v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~  676 (792)
                      -++.+....++ .+...|.|.--..+.......  +  .+++..  ++.   +..+..++-||.+.-+| +.++.+..+.
T Consensus       141 P~i~~g~~sly-~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~  215 (354)
T KOG4649|consen  141 PVIAPGDGSLY-AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA  215 (354)
T ss_pred             ceecCCCceEE-EEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence            45555333333 344456665555554422111  1  111111  111   23455666677777777 5555555443


Q ss_pred             CCCCCeEE-EEEc-CCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeecCCCceEEEEEeC----CCCEEEEE
Q 003842          677 GHTKPIDS-VCWD-PSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP----TYPSLLVI  741 (792)
Q Consensus       677 ~h~~~V~s-v~~s-pdg~~Las~s~d---------~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp----dg~~L~sg  741 (792)
                       ..++|.. -+-+ |....|..+.++         .-.+|...++.   ..+.+...   -..+.++.    ..++|..+
T Consensus       216 -t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~---t~~vy~~p---~l~F~~h~~~~S~~~ll~~~  288 (354)
T KOG4649|consen  216 -TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGT---TLHVYLSP---KLRFDLHSPGISYPKLLRRS  288 (354)
T ss_pred             -CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCc---EEEEEeCc---ccceeccCCCCcchhhhhhh
Confidence             2233321 1111 232334444333         33456655541   11111110   00122221    13457778


Q ss_pred             EcCCeEEEEECCCCcEEEEcccCCC---eEEEE-----E-eC---CCCEEEEEeCCCcEEEeC
Q 003842          742 GCYQSLELWNMSENKTMTLTAHEGL---IAALA-----V-ST---ETGYVASASHDKFVKLWK  792 (792)
Q Consensus       742 s~dg~I~IwDl~~~~~~~~~~h~~~---V~sl~-----f-sp---dg~~LaSgs~DG~I~IWd  792 (792)
                      +.||++.|.-.+.. +.....|.+.   +..+.     | +|   +| +|+.|+.|..|+-||
T Consensus       289 s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cld  349 (354)
T KOG4649|consen  289 SGDGKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLD  349 (354)
T ss_pred             cCCCcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEe
Confidence            88999888844332 2222233332   22222     1 22   44 577788999999986

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.63  E-value=5.8e-06  Score=98.26  Aligned_cols=240  Identities=13%  Similarity=0.161  Sum_probs=149.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR  591 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~  591 (792)
                      .+.|.++.|.-+.+-|+.+..+|.|.+-|.++... .....-...|.+++|+||+..++..+.++++.+-+-.-  .++.
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f--~~i~  144 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF--EPIA  144 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc--cchh
Confidence            35799999999999999999999999998876542 23334567899999999999999999988887754421  1111


Q ss_pred             --Eec---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE---EEeeCCeeEEEEecCCCEEEEEEc----C-
Q 003842          592 --TFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVFKGGTAQMRFQPHLGRYLAAAA----E-  658 (792)
Q Consensus       592 --~~~---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~---~~~~~~~~~v~~sp~~~~lla~s~----d-  658 (792)
                        .+.   ...+..-.+-|-..... | -|+ .|.....+.......   .....+...+.|--||.++++...    + 
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTq-f-rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQ-F-RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT  221 (1265)
T ss_pred             ccccccccccccccceeccccccee-e-ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence              110   01112223333322111 1 111 122222111111110   013345667999999888877432    3 


Q ss_pred             CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 003842          659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT  734 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspd  734 (792)
                      ..|+|||.+ +..-..-....+--.+++|-|.|.++++...+    .|.+|.-+..........+......+..++|+.+
T Consensus       222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~  300 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN  300 (1265)
T ss_pred             eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence            799999988 43332222233445689999999999986432    6888886543333333334444455899999999


Q ss_pred             CCEEEEE---EcCCeEEEEECCCCcEE
Q 003842          735 YPSLLVI---GCYQSLELWNMSENKTM  758 (792)
Q Consensus       735 g~~L~sg---s~dg~I~IwDl~~~~~~  758 (792)
                      +..|++.   .....|++|-+.+....
T Consensus       301 sdiLAv~~~~~e~~~v~lwt~~NyhWY  327 (1265)
T KOG1920|consen  301 SDILAVVTSNLENSLVQLWTTGNYHWY  327 (1265)
T ss_pred             CCceeeeecccccceEEEEEecCeEEE
Confidence            9998884   33446999999886544

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.63  E-value=1.2e-06  Score=100.87  Aligned_cols=270  Identities=18%  Similarity=0.181  Sum_probs=169.8

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC-CCEEEEEECCCCCeEEEEeCC-------
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFD-------  575 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~-~~V~~i~fspdg~~Lasgs~D-------  575 (792)
                      ++......-+.|.+++|.....++..|+..|.+.-+-+...+....+..|. ..|..+.....+  +++.+..       
T Consensus        46 ~L~~~~~~~G~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~~~~~~~~~--i~~ls~~alr~~~r  123 (1118)
T KOG1275|consen   46 ELISVGASYGTVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVRRIEPTESG--IFTLSKTALRATTR  123 (1118)
T ss_pred             ceeeeccccccccccccCchHHhheecccCCceeeeecccccceEEEEEeccchhhhhhhhhhh--heeeeHHHhhhhhc
Confidence            444444555678888888887788888877776655554444444444332 112222111111  1111110       


Q ss_pred             CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe-eEEEEecCCCEEEE
Q 003842          576 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT-AQMRFQPHLGRYLA  654 (792)
Q Consensus       576 g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~-~~v~~sp~~~~lla  654 (792)
                      +-+-++|.....        ...-...+..   +...++.|+.-..+..+|+++.+..+...-.. .+..+..++..+++
T Consensus       124 ~gl~~~~~~~~s--------~~~M~~~~~~---~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~  192 (1118)
T KOG1275|consen  124 QGLPVFDFTCPS--------MTKMASSLHM---GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFC  192 (1118)
T ss_pred             cCceeecccCCC--------HHHHHHHhcc---CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEe
Confidence            112222222100        0000111111   22334477777889999999988887765433 23334455677888


Q ss_pred             EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC---------C-eEEEEECCCCCCcceEEEeecCCC
Q 003842          655 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---------D-SVRVWTVGSGSEGECVHELSCNGN  724 (792)
Q Consensus       655 ~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~---------d-~I~IwDl~s~~~~~~i~~~~~~~~  724 (792)
                      |...|.|.+-|.++.+.+.++..|.+.|..+.  -.|+.|++|+.         | .|+|||+++.+...++..   +.+
T Consensus       193 G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---~~~  267 (1118)
T KOG1275|consen  193 GDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---PYG  267 (1118)
T ss_pred             ecccceEEeecCCcCceeeeeeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---ccC
Confidence            88899999999999999999999999987654  56888998874         3 589999987644333322   222


Q ss_pred             ceEEEEEeCCC-CEEEEEEcCCeEEEEE---CCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          725 KFHSCVFHPTY-PSLLVIGCYQSLELWN---MSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       725 ~i~si~fspdg-~~L~sgs~dg~I~IwD---l~~~~~~--~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      + .-+.|+|.. ..+++++..|...+.|   +.+...-  .+......|.++++++++..||.|..+|.|.+|.
T Consensus       268 P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  268 P-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             c-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            2 445778865 4688888899999998   4433222  3334445599999999999999999999999993

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.62  E-value=7.6e-06  Score=92.26  Aligned_cols=222  Identities=12%  Similarity=0.127  Sum_probs=123.7

Q ss_pred             cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe
Q 003842          552 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS  631 (792)
Q Consensus       552 ~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~  631 (792)
                      ........+.++|+|+++++ +.||...||.... .. -..    .+....++|...+.  +|+-.....|.|+.--+.+
T Consensus        30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~-~r-~k~----~G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA-WR-NKA----FGSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTT-TE-EEE----EEE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-
T ss_pred             CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccC-Cc-ccc----cCceeEEEEecCcc--EEEEECCCeEEEEEcCccc
Confidence            34555789999999998888 5677788887432 11 121    13344688888543  5566668889997433333


Q ss_pred             eEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC-
Q 003842          632 CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG-  710 (792)
Q Consensus       632 ~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~-  710 (792)
                      ..+.+..+...-.+..  +.++....++.|.+||..+++.+..+...  +|..|.|+++|++++..+.+.+.|++.... 
T Consensus       101 ~~k~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~  176 (443)
T PF04053_consen  101 VVKSIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEA  176 (443)
T ss_dssp             TT-----SS-EEEEE---SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHH
T ss_pred             cceEEcCCcccceEEc--CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchh
Confidence            3334443332222222  55566666669999999999999998743  389999999999999999998777765432 


Q ss_pred             -----C--CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 003842          711 -----S--EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS  783 (792)
Q Consensus       711 -----~--~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs  783 (792)
                           +  ....+..+......|.+.+|..+  .|+..+.. .|+.  +-.|+...+..-+.++.=+.+.+..+.|+...
T Consensus       177 ~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~D  251 (443)
T PF04053_consen  177 VAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLID  251 (443)
T ss_dssp             HHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-
T ss_pred             cccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEE
Confidence                 0  00133333333567889999877  44444443 6666  55566665555567778888888778888888


Q ss_pred             CCCcEEEe
Q 003842          784 HDKFVKLW  791 (792)
Q Consensus       784 ~DG~I~IW  791 (792)
                      .|+.|..+
T Consensus       252 r~~~v~~~  259 (443)
T PF04053_consen  252 RDGNVISY  259 (443)
T ss_dssp             TT--EEEE
T ss_pred             CCCCEEEE
Confidence            89888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.62  E-value=1.6e-05  Score=88.02  Aligned_cols=256  Identities=15%  Similarity=0.151  Sum_probs=151.3

Q ss_pred             cCCCCEEEEEe---------CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003842          521 SSDGKLLATGG---------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR  591 (792)
Q Consensus       521 spdg~~Lasgs---------~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~  591 (792)
                      |||+++++...         ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|.++++.++ ...+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~-~~~~   77 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG-QETQ   77 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS-EEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCC-CeEE
Confidence            67888877743         346799999999765544433 67788999999999998886 567999988763 2221


Q ss_pred             -Eecc-------c---------CCCeEEEEEcCCCCeEEEEEeCCCcEEE------------------------------
Q 003842          592 -TFMG-------H---------SASVMSLDFHPNKDDLICSCDGDGEIRY------------------------------  624 (792)
Q Consensus       592 -~~~~-------h---------~~~V~sl~fspd~~~ll~sgs~Dg~I~i------------------------------  624 (792)
                       +..+       -         -+.-..+.|+||++++++.--++..|+.                              
T Consensus        78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~  157 (353)
T PF00930_consen   78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR  157 (353)
T ss_dssp             SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred             eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence             2212       0         1223568899999988776555544433                              


Q ss_pred             -----EEcCCCeeEEEe-e-------CCeeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEecC-CCCCe---
Q 003842          625 -----WSINNGSCTRVF-K-------GGTAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQG-HTKPI---  682 (792)
Q Consensus       625 -----wdl~~~~~~~~~-~-------~~~~~v~~sp~~~~lla~s~d-----g~I~i~D~~t~~~~~~l~~-h~~~V---  682 (792)
                           +|+.+++....- .       .-+..+.|.+++..+++.-.+     ..+.++|..++++...+.. ...+|   
T Consensus       158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~  237 (353)
T PF00930_consen  158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY  237 (353)
T ss_dssp             EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred             eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence                 333333321110 0       113446788887755554432     2677788877644332222 23333   


Q ss_pred             EEEEEc-CCCC-EEEEEeCC---eEEEEECCCCCCcceEEEeecCCCceEE-EEEeCCCCEEEEEEcC-----CeEEEEE
Q 003842          683 DSVCWD-PSGE-LLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCY-----QSLELWN  751 (792)
Q Consensus       683 ~sv~~s-pdg~-~Las~s~d---~I~IwDl~s~~~~~~i~~~~~~~~~i~s-i~fspdg~~L~sgs~d-----g~I~IwD  751 (792)
                      ..+.|. +++. +|.....+   .|++++...+    ....+......|.. +.|+++++.|+..+..     ..|+..+
T Consensus       238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~  313 (353)
T PF00930_consen  238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS  313 (353)
T ss_dssp             SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred             cccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence            355555 6665 44444444   6888887654    24455555556644 6788988877665553     2677778


Q ss_pred             CC-CCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 003842          752 MS-ENKTMTLTAHEGLIAALAVSTETGYVASAS  783 (792)
Q Consensus       752 l~-~~~~~~~~~h~~~V~sl~fspdg~~LaSgs  783 (792)
                      +. .+....+....+....+.|||++++++..+
T Consensus       314 ~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  314 LDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             TTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             eCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence            88 666666665555447999999999877544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.62  E-value=9.1e-07  Score=93.85  Aligned_cols=157  Identities=13%  Similarity=0.136  Sum_probs=106.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCce----eEEeccCCCCEEEEEECCCCCeEEEEeC---CCcEEEEeCCCCC
Q 003842          515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPG  587 (792)
Q Consensus       515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~----~~~l~~h~~~V~~i~fspdg~~Lasgs~---Dg~V~IWdl~s~~  587 (792)
                      +..+.+++++++||++..+....++++.....    ..... -...-+++.|..+...+..+..   ...+.+|....  
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--  141 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--  141 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence            45566788889999998888877777654322    22221 2233445555555555555444   44455555543  


Q ss_pred             ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEcCCeEEE
Q 003842          588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSI  663 (792)
Q Consensus       588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~dg~I~i  663 (792)
                      .....+.+|-..++.|+|+||+. +|++++.|..|++-....-..+..|-    .-+..+++.++ ..|++++.|++|++
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL  219 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence            45566678999999999999985 55599999999998776655554442    33455665554 44899999999999


Q ss_pred             EECCCCeEEEEec
Q 003842          664 LDAETQACRLSLQ  676 (792)
Q Consensus       664 ~D~~t~~~~~~l~  676 (792)
                      ||+++++.+.++.
T Consensus       220 Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  220 WDITSGKLLDTCD  232 (390)
T ss_pred             EecccCCcccccc
Confidence            9999999886654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.60  E-value=5.7e-07  Score=90.21  Aligned_cols=109  Identities=17%  Similarity=0.253  Sum_probs=78.3

Q ss_pred             CCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCc
Q 003842          680 KPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-TYPSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       680 ~~V~sv~~spdg~-~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp-dg~~L~sgs~dg~I~IwDl~~~~  756 (792)
                      ..|.++|-+|.-. ++++|++| .+.+||.+..  ..++..+..|+..++.+.|+| ++..|++++.||.+..||..+.-
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~  257 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTF  257 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccc--cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCce
Confidence            3488999999665 45555666 8999999875  355666778999999999999 45789999999999999988521


Q ss_pred             EE----------EEc---------------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          757 TM----------TLT---------------AHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       757 ~~----------~~~---------------~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +-          .+.               .....|++  |.--|..|++|++-+-|++++
T Consensus       258 l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  258 LSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             EEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence            11          000               01112232  334577899999989999875

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.60  E-value=4.6e-05  Score=82.79  Aligned_cols=267  Identities=14%  Similarity=0.102  Sum_probs=137.5

Q ss_pred             EEEcCCCCEEEEEeC-C--CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec
Q 003842          518 CHFSSDGKLLATGGH-D--KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM  594 (792)
Q Consensus       518 lafspdg~~Lasgs~-D--g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~  594 (792)
                      =+|..||+.|+.++. |  ..+++.|+++++...--.+.........++++.+.|+....+..|+..|+++ .+....+.
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy~  119 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVYE  119 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc-CcEEEEEE
Confidence            367889976666554 4  4577778888876654443323233566778888877666667889999988 44444555


Q ss_pred             ccCCCeEEEEEc--CCCCeEEEEEeC----------------------CCcEEEEEcCCCeeEEEeeCC--eeEEEEecC
Q 003842          595 GHSASVMSLDFH--PNKDDLICSCDG----------------------DGEIRYWSINNGSCTRVFKGG--TAQMRFQPH  648 (792)
Q Consensus       595 ~h~~~V~sl~fs--pd~~~ll~sgs~----------------------Dg~I~iwdl~~~~~~~~~~~~--~~~v~~sp~  648 (792)
                      .....+-...|.  .++. +++..-.                      .+.|...|+.+|+....+...  ...+.|+|.
T Consensus       120 ~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~  198 (386)
T PF14583_consen  120 VPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT  198 (386)
T ss_dssp             --TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred             CCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence            555555445553  3333 3322110                      235677788888877766644  467899999


Q ss_pred             CCEEEEEEcCC-----eEEEEECCC-CeEEEEecCCC--CCeEEEEEcCCCCEEEEEeC-----C-eEEEEECCCCCCcc
Q 003842          649 LGRYLAAAAEN-----VVSILDAET-QACRLSLQGHT--KPIDSVCWDPSGELLASVSE-----D-SVRVWTVGSGSEGE  714 (792)
Q Consensus       649 ~~~lla~s~dg-----~I~i~D~~t-~~~~~~l~~h~--~~V~sv~~spdg~~Las~s~-----d-~I~IwDl~s~~~~~  714 (792)
                      ...+++-|-+|     .-+||-+++ +.....+..+.  ..+..=-|.+||..|...+.     + .|.-+|+.+++. .
T Consensus       199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~  277 (386)
T PF14583_consen  199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-R  277 (386)
T ss_dssp             EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-E
T ss_pred             CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-e
Confidence            98888877654     124554433 23333333332  23445569999997665332     3 677788877643 2


Q ss_pred             eEEEeecCCCceEEEEEeCCCCEEEEEEcCC----------------eEEEEECCCCcEEEEcccCC-----------Ce
Q 003842          715 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----------------SLELWNMSENKTMTLTAHEG-----------LI  767 (792)
Q Consensus       715 ~i~~~~~~~~~i~si~fspdg~~L~sgs~dg----------------~I~IwDl~~~~~~~~~~h~~-----------~V  767 (792)
                      .+...    .....+..++|+++++-=+.|.                -|+++++..+....+..|..           .=
T Consensus       278 ~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~h  353 (386)
T PF14583_consen  278 RLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTH  353 (386)
T ss_dssp             EEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT-
T ss_pred             EEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCC
Confidence            22222    2355666778888655434431                56778888877654444421           12


Q ss_pred             EEEEEeCCCCEEEEEe-CCCcEEEe
Q 003842          768 AALAVSTETGYVASAS-HDKFVKLW  791 (792)
Q Consensus       768 ~sl~fspdg~~LaSgs-~DG~I~IW  791 (792)
                      ....|+||+++|+..| ..|...||
T Consensus       354 Php~FSPDgk~VlF~Sd~~G~~~vY  378 (386)
T PF14583_consen  354 PHPSFSPDGKWVLFRSDMEGPPAVY  378 (386)
T ss_dssp             ---EE-TTSSEEEEEE-TTSS-EEE
T ss_pred             CCCccCCCCCEEEEECCCCCCccEE
Confidence            4578999999876554 47777665

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.59  E-value=7.6e-07  Score=89.34  Aligned_cols=164  Identities=13%  Similarity=0.149  Sum_probs=108.4

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEEeccCCCCEEEEEECCCCCeEEEEeC-----CCc
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRLATSSF-----DKT  577 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~-~~~~l~~h~~~V~~i~fspdg~~Lasgs~-----Dg~  577 (792)
                      ..+++..|.++-.+-+.+--++.++++..||.+.+++.+... ....+..-...-.+.++...++.|.++..     -+.
T Consensus        81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~  160 (319)
T KOG4714|consen   81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN  160 (319)
T ss_pred             ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence            444555666666666667777889999999999999987521 11222211111222233334444444321     234


Q ss_pred             EEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE----EEeeCCeeEEEEecCC-CEE
Q 003842          578 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT----RVFKGGTAQMRFQPHL-GRY  652 (792)
Q Consensus       578 V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~----~~~~~~~~~v~~sp~~-~~l  652 (792)
                      .++|+++-.+..+..... ...|.+++-+|.-.+++++|+.||.|.+||.+.....    +..+..+..+-|+|.. ..|
T Consensus       161 ~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  161 FYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             eeeecccccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence            677777653322222222 2349999999999999999999999999999987433    2345677889999865 578


Q ss_pred             EEEEcCCeEEEEECCC
Q 003842          653 LAAAAENVVSILDAET  668 (792)
Q Consensus       653 la~s~dg~I~i~D~~t  668 (792)
                      +++++||.+.-||..+
T Consensus       240 ft~sedGslw~wdas~  255 (319)
T KOG4714|consen  240 FTCSEDGSLWHWDAST  255 (319)
T ss_pred             eEecCCCcEEEEcCCC
Confidence            9999999999999765

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.58  E-value=9.5e-06  Score=92.74  Aligned_cols=255  Identities=14%  Similarity=0.092  Sum_probs=149.9

Q ss_pred             CCCCEEEEEeC-CCeEEEEECCCCceeEEecc-CCCCEEEEEEC--CCCCeEEEEe------------------CCCcEE
Q 003842          522 SDGKLLATGGH-DKKAVLWHTDTLKSKTNLEE-HSSLITDVRFS--PSMPRLATSS------------------FDKTVR  579 (792)
Q Consensus       522 pdg~~Lasgs~-Dg~I~vWdl~t~~~~~~l~~-h~~~V~~i~fs--pdg~~Lasgs------------------~Dg~V~  579 (792)
                      .||+||+.-.. +..|...+++..++.+.++- ....+..++|-  |+..|+++++                  +.+.+.
T Consensus       139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS  218 (635)
T PRK02888        139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT  218 (635)
T ss_pred             cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence            48889988764 56677778887776655542 22233333332  3333444332                  334556


Q ss_pred             EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEe---CCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEE
Q 003842          580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA  656 (792)
Q Consensus       580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs---~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s  656 (792)
                      +.|.++ .+....+.- .+....+.++++++.+++++.   ...++...+..+...+..|.-.. ...+.+++++.++  
T Consensus       219 vID~et-meV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkdGK~~~V--  293 (635)
T PRK02888        219 AVDAET-MEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKAGKFKTI--  293 (635)
T ss_pred             EEECcc-ceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhCCCEEEE--
Confidence            666665 233333221 224456788888887776652   22344444443333222222110 1134456666555  


Q ss_pred             cCCeEEEEECCC-----CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCC---------cceEEEee
Q 003842          657 AENVVSILDAET-----QACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE---------GECVHELS  720 (792)
Q Consensus       657 ~dg~I~i~D~~t-----~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~---------~~~i~~~~  720 (792)
                      .++.|.++|.++     .+.+..+. -......|.++|||+++++++.-  +|.|+|+.+...         ...+.+..
T Consensus       294 ~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve  372 (635)
T PRK02888        294 GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE  372 (635)
T ss_pred             CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence            467899999998     35555554 34556889999999999888764  999999987532         11223333


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC----------CcEE-EEcccCCCe-----EEEEEeCCCCEEEEEe
Q 003842          721 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE----------NKTM-TLTAHEGLI-----AALAVSTETGYVASAS  783 (792)
Q Consensus       721 ~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~----------~~~~-~~~~h~~~V-----~sl~fspdg~~LaSgs  783 (792)
                      . +......+|.++|....+..-|..|..||+.+          ..++ .+..|-.+.     .+=.-.+||+||++.+
T Consensus       373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             c-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            2 33455678999998888888899999999876          2233 233332221     1122367888888764

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.58  E-value=1.5e-07  Score=97.67  Aligned_cols=157  Identities=15%  Similarity=0.239  Sum_probs=120.9

Q ss_pred             EEEEcCC--CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC----Ccee
Q 003842          517 CCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP----GYSL  590 (792)
Q Consensus       517 ~lafspd--g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~----~~~i  590 (792)
                      .|+|+-+  |-. ++.+.+-.|-+-|++++-.-. |. ..+.|.++.|.-.+++++.|+.+|.|.++|++..    +.+.
T Consensus       216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a  292 (425)
T KOG2695|consen  216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA  292 (425)
T ss_pred             hhhhhhccceee-ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence            3466643  323 445567778888998875332 32 5677999999998999999999999999999874    4444


Q ss_pred             EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee---EEEeeCCeeEEE-----EecCCCEEEEEEcCCeEE
Q 003842          591 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGGTAQMR-----FQPHLGRYLAAAAENVVS  662 (792)
Q Consensus       591 ~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~---~~~~~~~~~~v~-----~sp~~~~lla~s~dg~I~  662 (792)
                      ..+ -|...|+++.........+.+.+.+|+|++||++.-++   +..++++++..+     +.+..+.+++++.|-..+
T Consensus       293 ~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytR  371 (425)
T KOG2695|consen  293 QRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTR  371 (425)
T ss_pred             EEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEE
Confidence            444 48899999988763344566888899999999998777   888888876643     556778899999999999


Q ss_pred             EEECCCCeEEEEecC
Q 003842          663 ILDAETQACRLSLQG  677 (792)
Q Consensus       663 i~D~~t~~~~~~l~~  677 (792)
                      ||.++.+..+.++..
T Consensus       372 iWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  372 IWSLDSGHLLCTIPF  386 (425)
T ss_pred             EEecccCceeeccCC
Confidence            999999988887754

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=5.7e-07  Score=96.23  Aligned_cols=205  Identities=14%  Similarity=0.182  Sum_probs=146.4

Q ss_pred             cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC--CCceeEEecccCCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcC
Q 003842          552 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSIN  628 (792)
Q Consensus       552 ~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s--~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~-Dg~I~iwdl~  628 (792)
                      -|.+.|+.+... ..+++++++.||.++.|.-..  +-+.+..+..|...|.+++.+-++ .++++.+. |..++++|++
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEee
Confidence            377777776655 456999999999999997653  224556677888999999998885 57778676 9999999998


Q ss_pred             CCeeEEEeeC--CeeEEEEecCCC---EEEEEE--cCCeEEEEECCCCe--EEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003842          629 NGSCTRVFKG--GTAQMRFQPHLG---RYLAAA--AENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSE  699 (792)
Q Consensus       629 ~~~~~~~~~~--~~~~v~~sp~~~---~lla~s--~dg~I~i~D~~t~~--~~~~l~~h~~~V~sv~~spdg~~Las~s~  699 (792)
                      +-..+..++.  -...++|....+   .+++.+  .++.|.|+|-....  ....-.-|..+|.++.+.+.+..+++...
T Consensus        85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~  164 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI  164 (558)
T ss_pred             ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence            8766543331  112222322222   223332  37899999987653  33344459999999999999999988887


Q ss_pred             C-eEEEEECCC-CC--C---------cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          700 D-SVRVWTVGS-GS--E---------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       700 d-~I~IwDl~s-~~--~---------~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      . .|..|.... ..  .         ...+..+........++.|+|++..|.+.+.|..|+++++++++.+
T Consensus       165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence            6 899998863 10  0         0112233334566789999999999999999999999999998754

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.57  E-value=2.6e-05  Score=90.07  Aligned_cols=256  Identities=12%  Similarity=0.104  Sum_probs=149.0

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccCCCC------EE--EEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecc
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL------IT--DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG  595 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~------V~--~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~  595 (792)
                      +..+++++.++.|+.+|..+++.+-.+......      +.  .+.+. ++..++.++.++.|+-+|.++ ++.+-.+..
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T-G~~~W~~~~  138 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET-GKQVWKFGN  138 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC-CCEeeeecC
Confidence            346777778899999999999888776543220      00  11111 226888888999999999998 555544432


Q ss_pred             cCCC-----e-EEEEEcCCCCeEEEEEe---------CCCcEEEEEcCCCeeEEEeeCCe--------------------
Q 003842          596 HSAS-----V-MSLDFHPNKDDLICSCD---------GDGEIRYWSINNGSCTRVFKGGT--------------------  640 (792)
Q Consensus       596 h~~~-----V-~sl~fspd~~~ll~sgs---------~Dg~I~iwdl~~~~~~~~~~~~~--------------------  640 (792)
                      ....     | .+..+..  . +++.++         .+|.|..+|..+++.+..++...                    
T Consensus       139 ~~~~~~~~~i~ssP~v~~--~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g  215 (488)
T cd00216         139 NDQVPPGYTMTGAPTIVK--K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG  215 (488)
T ss_pred             CCCcCcceEecCCCEEEC--C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence            2210     1 1122221  2 233443         46889999999999887764321                    


Q ss_pred             ----eEEEEecCCCEEEEEEcCC------------------eEEEEECCCCeEEEEecCCCCCeE------EEEEc----
Q 003842          641 ----AQMRFQPHLGRYLAAAAEN------------------VVSILDAETQACRLSLQGHTKPID------SVCWD----  688 (792)
Q Consensus       641 ----~~v~~sp~~~~lla~s~dg------------------~I~i~D~~t~~~~~~l~~h~~~V~------sv~~s----  688 (792)
                          ....+.+.++.+++++.++                  .|.-+|.++++.+..+..-...+.      ...+.    
T Consensus       216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~  295 (488)
T cd00216         216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP  295 (488)
T ss_pred             CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence                0133445567888887665                  799999999999887653111110      00111    


Q ss_pred             CCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE------------------EcCCe
Q 003842          689 PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI------------------GCYQS  746 (792)
Q Consensus       689 pdg~---~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sg------------------s~dg~  746 (792)
                      -++.   +++.++.+ .+..+|.++++   .+......   ...++.+|  ..++++                  ..+|.
T Consensus       296 ~~g~~~~~V~~g~~~G~l~ald~~tG~---~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~  367 (488)
T cd00216         296 KDGKPVPAIVHAPKNGFFYVLDRTTGK---LISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG  367 (488)
T ss_pred             cCCCeeEEEEEECCCceEEEEECCCCc---EeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence            2343   56666666 89999999884   33332211   11122333  233332                  23578


Q ss_pred             EEEEECCCCcEEEEcccC---------CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          747 LELWNMSENKTMTLTAHE---------GLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       747 I~IwDl~~~~~~~~~~h~---------~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |.-+|+.+++.+-.....         .....-.....+.+|+.++.||.|+.+|
T Consensus       368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald  422 (488)
T cd00216         368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD  422 (488)
T ss_pred             EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence            899999999877322211         1111111112456788888899888764

The alignment model contains an 8-bladed beta-propeller.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.56  E-value=9.6e-06  Score=91.71  Aligned_cols=273  Identities=11%  Similarity=0.114  Sum_probs=153.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe-ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL  590 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l-~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i  590 (792)
                      ...|.--+++..+++|+.|+.-|.|++|+-..+.....- .+..+.+..+..+++..++|.|+..|.|.|+-+......-
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            444666677788889999999999999998776544332 2345556677788888889999999999999887633221


Q ss_pred             EE----e-cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-----eeEEEeeCCeeEEEEecCCCEEEEEEcCCe
Q 003842          591 RT----F-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-----SCTRVFKGGTAQMRFQPHLGRYLAAAAENV  660 (792)
Q Consensus       591 ~~----~-~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~-----~~~~~~~~~~~~v~~sp~~~~lla~s~dg~  660 (792)
                      ..    + ..|...|++++|++++..++ +|+..|.|.+-.+...     .....++.....+.++.-..++++++.-..
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~  191 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRC  191 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhh
Confidence            11    1 23778999999999987655 9999999999888772     111222223333444444455555444333


Q ss_pred             EEEEECCCCeEEEEec-CCCC-CeEEEEEcCC----CCEEEEEeCCeEEEEECCCCCCcceEEEee--------------
Q 003842          661 VSILDAETQACRLSLQ-GHTK-PIDSVCWDPS----GELLASVSEDSVRVWTVGSGSEGECVHELS--------------  720 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~-~h~~-~V~sv~~spd----g~~Las~s~d~I~IwDl~s~~~~~~i~~~~--------------  720 (792)
                      + +++++..+....-+ ..++ .-...||-|.    ..-++.|+.-..|+|.++-..+....+.++              
T Consensus       192 ~-Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~  270 (726)
T KOG3621|consen  192 I-LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAGEVIKTHQFKDALARPPAPEIPIR  270 (726)
T ss_pred             h-eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecceeEEEeeehhhhhccCCCCcccCC
Confidence            3 33443322110000 0111 1234455553    334444554467788764321111111110              


Q ss_pred             c-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCc
Q 003842          721 C-------------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF  787 (792)
Q Consensus       721 ~-------------~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~  787 (792)
                      .             +.-....+.+- .+..+++-+.-| |+|+|..+...+........|..++.+  ++-|++-..||.
T Consensus       271 s~esp~~~~~~~~~q~ls~~k~~~l-~~~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~--~neiFvL~~d~~  346 (726)
T KOG3621|consen  271 SLESPNQRSLPSGTQHLSLSKSSTL-HSDRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHC--GNEIFVLNLDRG  346 (726)
T ss_pred             CcCCccccCCCCCccccccceeEEe-ecceEEEeecce-EEEEEeccceEEEeecCCCceeEEeec--CceEEEEecCCc
Confidence            0             00001111121 222344444444 999999888877666555667666654  333444455665


Q ss_pred             EEE
Q 003842          788 VKL  790 (792)
Q Consensus       788 I~I  790 (792)
                      +++
T Consensus       347 l~~  349 (726)
T KOG3621|consen  347 LKV  349 (726)
T ss_pred             eeE
Confidence            544

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.53  E-value=2e-05  Score=80.85  Aligned_cols=187  Identities=15%  Similarity=0.120  Sum_probs=110.1

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-------CCCCEEEEEECCCC------CeEEEEeCCCcEEEE
Q 003842          515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSM------PRLATSSFDKTVRVW  581 (792)
Q Consensus       515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-------h~~~V~~i~fspdg------~~Lasgs~Dg~V~IW  581 (792)
                      =.-++||||+.+||.+...|+|+|||+... .+..+..       -...|..+.|.+..      ..|++-.++|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            467899999999999999999999998753 3333332       23567777776532      257777888888877


Q ss_pred             eCCC----CCceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEE-
Q 003842          582 DADN----PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL-  653 (792)
Q Consensus       582 dl~s----~~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll-  653 (792)
                      -+..    +......+.   .+...|.++.|+|...-|++.|.....-..+.        ....+..+-++..+..++. 
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~--------a~~~GLtaWRiL~~~Pyyk~  196 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK--------ASSCGLTAWRILSDSPYYKQ  196 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc--------ccccCceEEEEcCCCCcEEE
Confidence            7632    112222222   34678999999998765555554433211110        0111122222211111111 


Q ss_pred             -EEEcCCe------EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003842          654 -AAAAENV------VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG  710 (792)
Q Consensus       654 -a~s~dg~------I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~  710 (792)
                       ....|+.      ..+|.+-+.+...........|..|..+|||.+||+...+ .|.+|++.+-
T Consensus       197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence             1111111      1223322222222222346779999999999999999988 9999999754

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.48  E-value=0.00022  Score=80.69  Aligned_cols=241  Identities=14%  Similarity=0.096  Sum_probs=136.8

Q ss_pred             eEEEEEcCCCCEEEEE-eCC----CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC-----------cE
Q 003842          515 VICCHFSSDGKLLATG-GHD----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-----------TV  578 (792)
Q Consensus       515 V~~lafspdg~~Lasg-s~D----g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg-----------~V  578 (792)
                      +..+++||||++||.+ +..    ..|+|+|+++++.+...-... ....+.|.++++.|+....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            4467899999999876 333    359999999997765332111 122399999988776665433           38


Q ss_pred             EEEeCCCCCce-eEEecccCCC--eEEEEEcCCCCeEEEEEeCCC---cEEEEEcCCC-----eeEEEeeC--CeeEEEE
Q 003842          579 RVWDADNPGYS-LRTFMGHSAS--VMSLDFHPNKDDLICSCDGDG---EIRYWSINNG-----SCTRVFKG--GTAQMRF  645 (792)
Q Consensus       579 ~IWdl~s~~~~-i~~~~~h~~~--V~sl~fspd~~~ll~sgs~Dg---~I~iwdl~~~-----~~~~~~~~--~~~~v~~  645 (792)
                      ++|++.+.... ...+......  ...+.++++++.+++......   .|++.|+..+     ........  .......
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            88898874433 3344333322  678889999998887665544   4888888875     22333322  2222222


Q ss_pred             ecCCCEEEEEEc----CCeEEEEECCCCe---EEEEecCCCCCeEEEEEcCCCCEEEE-EeCC---eEEEEECCCCCCcc
Q 003842          646 QPHLGRYLAAAA----ENVVSILDAETQA---CRLSLQGHTKPIDSVCWDPSGELLAS-VSED---SVRVWTVGSGSEGE  714 (792)
Q Consensus       646 sp~~~~lla~s~----dg~I~i~D~~t~~---~~~~l~~h~~~V~sv~~spdg~~Las-~s~d---~I~IwDl~s~~~~~  714 (792)
                      .. ++.+++.+.    .+.|...++....   ....+..+...+.-..+...+++|+. ...+   .|++|++..+   .
T Consensus       285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~---~  360 (414)
T PF02897_consen  285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG---K  360 (414)
T ss_dssp             EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T---E
T ss_pred             cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC---c
Confidence            22 555554443    4578888888764   23344455554333333344444444 3344   7999999722   2


Q ss_pred             eEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCcEEEE
Q 003842          715 CVHELSC-NGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTL  760 (792)
Q Consensus       715 ~i~~~~~-~~~~i~si~fspdg~~L~sgs~d----g~I~IwDl~~~~~~~~  760 (792)
                      ....+.. ..+.+..+...++++.+...-..    .+|+.||+.+++...+
T Consensus       361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~  411 (414)
T PF02897_consen  361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL  411 (414)
T ss_dssp             EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred             EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence            3333332 33345666555666654443332    4899999999886643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.46  E-value=5.1e-06  Score=94.96  Aligned_cols=181  Identities=18%  Similarity=0.234  Sum_probs=127.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR  591 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~  591 (792)
                      .+.++|++++  +++|+.|+.+|.|++++....-  .+...|...      ..+|.++++|+.||+|.|..+.++.. ..
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~  107 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT  107 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence            4567888887  4599999999999999876432  333344443      56899999999999999999987443 33


Q ss_pred             EecccCCCeEEEEEcCC----CCeEEEEEeCCCcEEEEEcCC---C--eeEEEeeCCeeEEEEecCCCEEEEEEcCCeEE
Q 003842          592 TFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINN---G--SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVS  662 (792)
Q Consensus       592 ~~~~h~~~V~sl~fspd----~~~ll~sgs~Dg~I~iwdl~~---~--~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~  662 (792)
                      .+ ....++.+|+++|+    ....+++|+..| +.++.-+-   .  ......++.+.++.|.   +.+++-..|-.|+
T Consensus       108 ~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~Gv~  182 (846)
T KOG2066|consen  108 QY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDDGVK  182 (846)
T ss_pred             eE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCCCcE
Confidence            33 34578999999998    223466888888 77665321   1  1233445777888886   4578888888899


Q ss_pred             EEECCCCeEEEEecCCCCCe------EEEEEcCCCCEEEEEeCCeEEEEECCC
Q 003842          663 ILDAETQACRLSLQGHTKPI------DSVCWDPSGELLASVSEDSVRVWTVGS  709 (792)
Q Consensus       663 i~D~~t~~~~~~l~~h~~~V------~sv~~spdg~~Las~s~d~I~IwDl~s  709 (792)
                      |||+.++..+..+......+      ..+.|.++ ..|+.|-.|+|+|..++.
T Consensus       183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d~v~i~~I~~  234 (846)
T KOG2066|consen  183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGDSVKICSIKK  234 (846)
T ss_pred             EEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCCeEEEEEEec
Confidence            99999988877665433322      34677655 456667777888888873

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.45  E-value=0.00028  Score=75.41  Aligned_cols=255  Identities=11%  Similarity=0.122  Sum_probs=157.0

Q ss_pred             CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC----------CCcEEEEeCCCCCceeEEeccc---C---
Q 003842          534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMGH---S---  597 (792)
Q Consensus       534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~----------Dg~V~IWdl~s~~~~i~~~~~h---~---  597 (792)
                      +.|+|+|.++++.+-.+..-  ..-.+..+|+++.+++++.          .-.|.+||..+ -.....+.-.   .   
T Consensus        17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-L~~~~EI~iP~k~R~~~   93 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-LSPTGEIEIPPKPRAQV   93 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-TEEEEEEEETTS-B--B
T ss_pred             ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-CcccceEecCCcchhee
Confidence            47999999999988777642  2334678999998887642          34589999987 3333322211   1   


Q ss_pred             -CCeEEEEEcCCCCeEEEE-EeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEE
Q 003842          598 -ASVMSLDFHPNKDDLICS-CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLS  674 (792)
Q Consensus       598 -~~V~sl~fspd~~~ll~s-gs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~-t~~~~~~  674 (792)
                       .....+.++.+++++++. .+-.-.|.|.|+..++.+..+..+.....+-.....+.+.|.||.+..+.+. .++...+
T Consensus        94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~  173 (342)
T PF06433_consen   94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK  173 (342)
T ss_dssp             S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred             cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence             122345677777766543 2234568889999999988887666555554444678899999999888887 4444322


Q ss_pred             ----ecCCCCCe-EEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeecC----------CCceEEEEEeCCCCEE
Q 003842          675 ----LQGHTKPI-DSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN----------GNKFHSCVFHPTYPSL  738 (792)
Q Consensus       675 ----l~~h~~~V-~sv~~spdg~-~Las~s~d~I~IwDl~s~~~~~~i~~~~~~----------~~~i~si~fspdg~~L  738 (792)
                          |.....++ ..-++...+. +++....+.|+-.|+.... .+....+...          .+...-+++++..+.|
T Consensus       174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl  252 (342)
T PF06433_consen  174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL  252 (342)
T ss_dssp             EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred             eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence                22222222 2334444444 4444444488888876542 2233322211          1223457888877766


Q ss_pred             EEEEcCC----------eEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-CCCcEEEeC
Q 003842          739 LVIGCYQ----------SLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK  792 (792)
Q Consensus       739 ~sgs~dg----------~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~-~LaSgs-~DG~I~IWd  792 (792)
                      ++.-..|          .|.+||+.+++.+....-...+.+|.++.|.+ +|++.+ .++.|.|||
T Consensus       253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence            6653221          68999999999885555455688999998776 665544 578999986

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.45  E-value=7e-06  Score=94.72  Aligned_cols=182  Identities=14%  Similarity=0.130  Sum_probs=134.0

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeE-E
Q 003842          565 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-M  643 (792)
Q Consensus       565 dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~-v  643 (792)
                      ++..++.|+.-..+..+|+++ .+..+...-....|+-++.+   ++++++|...|+|.+-|.++.+.++.+..+... .
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~-~~e~r~~~v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS  221 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNT-EKETRTTNVSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS  221 (1118)
T ss_pred             CCcceeecchhhheeeeeccc-ceeeeeeeccCCceEEEEec---CcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence            455788888888899999987 44555544444456666654   456779999999999999999999999987666 4


Q ss_pred             EEecCCCEEEEEEc---------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEE-eCCeEEEEECCCCCC
Q 003842          644 RFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASV-SEDSVRVWTVGSGSE  712 (792)
Q Consensus       644 ~~sp~~~~lla~s~---------dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg-~~Las~-s~d~I~IwDl~s~~~  712 (792)
                      .|...|+.+++++.         |..|.|||+++.+.+.-+.-+.++ .-+.|.|.- ..++++ +.+...+.|..+...
T Consensus       222 DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  222 DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence            58888999998875         567999999998777665555444 345677742 234444 444777777433222


Q ss_pred             -cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003842          713 -GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN  751 (792)
Q Consensus       713 -~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwD  751 (792)
                       ...+.-+......+..+.+++++..++.|..+|.|.+|.
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence             234455555666799999999999999999999999997

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.44  E-value=2.2e-05  Score=88.26  Aligned_cols=190  Identities=13%  Similarity=0.242  Sum_probs=127.0

Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEeCC---CcEEEEEcCCCeeEEE--eeCCeeEEEEecCCCEEEEEEc-CC-
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAA-EN-  659 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D---g~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~lla~s~-dg-  659 (792)
                      +.....+......+..-+|+|++..+++..-..   ..++++|+++++....  +.+......|+|++.+++.+.. || 
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~  261 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS  261 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence            444555555666778889999998876654433   3499999998876554  4566677899999999887766 44 


Q ss_pred             -eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 003842          660 -VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT  734 (792)
Q Consensus       660 -~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspd  734 (792)
                       .|+++|+....... +....+.-+.-.|+|||++|+..++.    .|.+++.+....    ..+......-..-.|+||
T Consensus       262 ~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~Spd  336 (425)
T COG0823         262 PDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPD  336 (425)
T ss_pred             ccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCC
Confidence             68888888876433 44333444467899999999888765    577777765422    333333333347789999


Q ss_pred             CCEEEEEEcC-C--eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEE
Q 003842          735 YPSLLVIGCY-Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS  781 (792)
Q Consensus       735 g~~L~sgs~d-g--~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaS  781 (792)
                      |++|+..+.. |  .|.++|+.++.......+.......+|.+++++|+.
T Consensus       337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~  386 (425)
T COG0823         337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMF  386 (425)
T ss_pred             CCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEE
Confidence            9999988854 3  377777776664433344444445556666665544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=3.5e-05  Score=88.90  Aligned_cols=203  Identities=14%  Similarity=0.267  Sum_probs=138.0

Q ss_pred             EECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC-----cEEEEEcCCC-----
Q 003842          561 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNG-----  630 (792)
Q Consensus       561 ~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg-----~I~iwdl~~~-----  630 (792)
                      +|++.+..+|.|+.+|.|.+++-.  -..+..|..+...|...-|.-++..++++.+.|+     .|+|||++..     
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            467788899999999988777654  3455777777776444445555555666666654     5899998743     


Q ss_pred             -eeE---EEee-------CCeeEEEEecCCCEEEEEEcCCeEEEEECCC----CeEEEEecCCCCCeEEEEEcCCCCE-E
Q 003842          631 -SCT---RVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAET----QACRLSLQGHTKPIDSVCWDPSGEL-L  694 (792)
Q Consensus       631 -~~~---~~~~-------~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t----~~~~~~l~~h~~~V~sv~~spdg~~-L  694 (792)
                       .++   +.+.       .+..+++++.+-..+++|..+|.|.++.-+-    +...........+|+.+++..++.. +
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence             234   2222       2456788888989999999999999985421    1111112234678999999999986 5


Q ss_pred             EEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-EEEc-ccCCCeE
Q 003842          695 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-MTLT-AHEGLIA  768 (792)
Q Consensus       695 as~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~-~~~~-~h~~~V~  768 (792)
                      ++++...|.+|.+. ++. .....+..++..+.|..+++...-|++++. ..|++||.+.... ..+. +|.....
T Consensus       188 Fv~Tt~~V~~y~l~-gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~  260 (933)
T KOG2114|consen  188 FVATTEQVMLYSLS-GRT-PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEML  260 (933)
T ss_pred             EEEecceeEEEEec-CCC-cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEE
Confidence            55666689999997 333 345557778888898888887664555544 4799999876543 3555 5655443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.44  E-value=0.00015  Score=80.38  Aligned_cols=227  Identities=18%  Similarity=0.194  Sum_probs=131.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-c---------------C-CCCEEEEEECCCCCeEEEEeC
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-E---------------H-SSLITDVRFSPSMPRLATSSF  574 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~---------------h-~~~V~~i~fspdg~~Lasgs~  574 (792)
                      ...+....|||||++||... ++.|+++++.++.....-. +               . -+.-..+.|+||+++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            55688899999999999986 6799999987764332211 1               0 122356889999999888754


Q ss_pred             CC-c-----------------------------------EEEEeCCCCCce-eEEe---cccCCCeEEEEEcCCCCeEE-
Q 003842          575 DK-T-----------------------------------VRVWDADNPGYS-LRTF---MGHSASVMSLDFHPNKDDLI-  613 (792)
Q Consensus       575 Dg-~-----------------------------------V~IWdl~s~~~~-i~~~---~~h~~~V~sl~fspd~~~ll-  613 (792)
                      |. .                                   +.|+|+.++... +...   ..-...+..+.|.+++..++ 
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            31 1                                   333444432211 1111   12344577888988877343 


Q ss_pred             EEEeCCC---cEEEEEcCCCeeEEEeeC-------CeeEEEEe-cCCCEEEEEE-cCC--eEEEEECCCCeEEEEecCCC
Q 003842          614 CSCDGDG---EIRYWSINNGSCTRVFKG-------GTAQMRFQ-PHLGRYLAAA-AEN--VVSILDAETQACRLSLQGHT  679 (792)
Q Consensus       614 ~sgs~Dg---~I~iwdl~~~~~~~~~~~-------~~~~v~~s-p~~~~lla~s-~dg--~I~i~D~~t~~~~~~l~~h~  679 (792)
                      .....+.   .+.++|..++.+...+..       ......+. +++..++..+ .+|  .|++++...+... .+....
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~  279 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD  279 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence            3334332   466778877665443321       22345554 6666665544 456  6777777777644 555455


Q ss_pred             CCeEE-EEEcCCCCEEE-EEeCC-----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003842          680 KPIDS-VCWDPSGELLA-SVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC  743 (792)
Q Consensus       680 ~~V~s-v~~spdg~~La-s~s~d-----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~  743 (792)
                      -.|.. +.|+++++.|+ ++..+     .|+..++..+   ..+..+.+.......+.|+|++++++..+.
T Consensus       280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            56754 67888877555 34432     4555566512   344555555444479999999998886654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.40  E-value=2.1e-07  Score=103.41  Aligned_cols=197  Identities=14%  Similarity=0.187  Sum_probs=131.1

Q ss_pred             CCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCce--eEEeccCCCCEEEEEECC-CCCeEEEEe----CCCcEEEEe
Q 003842          512 TSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSP-SMPRLATSS----FDKTVRVWD  582 (792)
Q Consensus       512 ~~~V~~lafspdg--~~Lasgs~Dg~I~vWdl~t~~~--~~~l~~h~~~V~~i~fsp-dg~~Lasgs----~Dg~V~IWd  582 (792)
                      ...+.|++++-+.  ..+++|..+|.|.+-.+.....  .....++...+++++|++ |.+.||+|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            4457888876644  4788999999999988764322  344567889999999998 555677763    356799999


Q ss_pred             CCCCC----ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEEeeC-CeeEEEEecCCCEEEEEE
Q 003842          583 ADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKG-GTAQMRFQPHLGRYLAAA  656 (792)
Q Consensus       583 l~s~~----~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~-~~~~v~~sp~~~~lla~s  656 (792)
                      +.+.-    +......+......++||..+ ..++.+|.....|.++|++-.. ....+.. .+..+.+.|-...+++..
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             cccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc
Confidence            98731    111111123455668999855 4567788888899999998322 1222222 344566777556677777


Q ss_pred             cCCeEEEEEC-CCCeE-EEEecCC----CCCeEEEEEcCCCC-EEEEEeCC--eEEEEECCC
Q 003842          657 AENVVSILDA-ETQAC-RLSLQGH----TKPIDSVCWDPSGE-LLASVSED--SVRVWTVGS  709 (792)
Q Consensus       657 ~dg~I~i~D~-~t~~~-~~~l~~h----~~~V~sv~~spdg~-~Las~s~d--~I~IwDl~s  709 (792)
                      .||.|.+||. ++-+. +..+...    ...+..++|+|... .++++..|  +|++||+..
T Consensus       215 ~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  215 SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            7999999994 33322 2222211    22489999999654 67777777  899999854

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=8.8e-05  Score=85.68  Aligned_cols=189  Identities=11%  Similarity=0.122  Sum_probs=130.6

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC-EEEEEECCCCCeEEEEeCCCc-----EEEEeCCCC-----C
Q 003842          519 HFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSSFDKT-----VRVWDADNP-----G  587 (792)
Q Consensus       519 afspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~-V~~i~fspdg~~Lasgs~Dg~-----V~IWdl~s~-----~  587 (792)
                      +|++.+..+|.|+.+|.|.+++- ....+..+..+... |..+-......+|++.+.|+.     |+|||++..     .
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            46788889999999999988763 34555677777766 444433334467888777654     899999752     1


Q ss_pred             cee---EEec----ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC--CCeeE-----EEeeCCeeEEEEecCCCEEE
Q 003842          588 YSL---RTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--NGSCT-----RVFKGGTAQMRFQPHLGRYL  653 (792)
Q Consensus       588 ~~i---~~~~----~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~--~~~~~-----~~~~~~~~~v~~sp~~~~ll  653 (792)
                      .++   +.+.    ....++.+++++.+ -..+|+|-.+|.|.++.=+  ..+-.     ..-+.+++.+.+..++..++
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence            222   2222    13467888999888 4467788899999988422  11111     12245788899998888866


Q ss_pred             EEEcCCeEEEEECCCCeE-EEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCC
Q 003842          654 AAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS  709 (792)
Q Consensus       654 a~s~dg~I~i~D~~t~~~-~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s  709 (792)
                      .+.....|.+|.+....+ ...+..|...+.|..+++...-|++++...|.+||...
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~  244 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG  244 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCC
Confidence            666677888888875543 44477788899999998766657777777899999863

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.39  E-value=8.4e-05  Score=78.50  Aligned_cols=191  Identities=14%  Similarity=0.161  Sum_probs=135.3

Q ss_pred             CeEEEEEcCCCCeEEEEEeCCCc-EEEEEcCCCeeEEEeeCCe-----eEEEEecCCCEEEEEEc-----CCeEEEEECC
Q 003842          599 SVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTRVFKGGT-----AQMRFQPHLGRYLAAAA-----ENVVSILDAE  667 (792)
Q Consensus       599 ~V~sl~fspd~~~ll~sgs~Dg~-I~iwdl~~~~~~~~~~~~~-----~~v~~sp~~~~lla~s~-----dg~I~i~D~~  667 (792)
                      ....++.+|.....++.+-.-|+ ..+||..++.....+....     -..+|++++.+|++.-.     .|.|-|||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            45578889977778878877665 6789999999887765432     23689999999988765     4799999999


Q ss_pred             -CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------------------eEEEEECCCCCCcceEEE--e--ecCC
Q 003842          668 -TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------------------SVRVWTVGSGSEGECVHE--L--SCNG  723 (792)
Q Consensus       668 -t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-------------------~I~IwDl~s~~~~~~i~~--~--~~~~  723 (792)
                       +.+.+.++..|.-.-..+.+.|||+.|+++..+                   .+.+.|..++   +.+..  +  ..+.
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---~ll~q~~Lp~~~~~  162 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---ALLEQVELPPDLHQ  162 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---ceeeeeecCccccc
Confidence             668888888877777788899999877766432                   2445555555   33333  3  3366


Q ss_pred             CceEEEEEeCCCCEEEEEEcCC-------eEEEEECCCCc-EEE-----EcccCCCeEEEEEeCCCCEEEEEe-CCCcEE
Q 003842          724 NKFHSCVFHPTYPSLLVIGCYQ-------SLELWNMSENK-TMT-----LTAHEGLIAALAVSTETGYVASAS-HDKFVK  789 (792)
Q Consensus       724 ~~i~si~fspdg~~L~sgs~dg-------~I~IwDl~~~~-~~~-----~~~h~~~V~sl~fspdg~~LaSgs-~DG~I~  789 (792)
                      ..|..+++.++|..++..-..|       -|.+++....- .+.     ...-.+.|-+|+++.++.++++.+ .-|.+.
T Consensus       163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~  242 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA  242 (305)
T ss_pred             cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence            7899999999998666665444       35555544421 111     123457899999999998775544 567888


Q ss_pred             EeC
Q 003842          790 LWK  792 (792)
Q Consensus       790 IWd  792 (792)
                      +||
T Consensus       243 ~~d  245 (305)
T PF07433_consen  243 VWD  245 (305)
T ss_pred             EEE
Confidence            995

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.36  E-value=0.00042  Score=77.82  Aligned_cols=90  Identities=11%  Similarity=0.075  Sum_probs=70.2

Q ss_pred             eEEEEECCCCCCcceEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEE
Q 003842          701 SVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYV  779 (792)
Q Consensus       701 ~I~IwDl~s~~~~~~i~~~-~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~L  779 (792)
                      .-++|++...+ ..++... ......+.+++++|+...++.|+.||.|.+||...+..... ...-.++.++|+|+|.+|
T Consensus       237 d~ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~  314 (545)
T PF11768_consen  237 DSCIYECSRNK-LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIF  314 (545)
T ss_pred             EEEEEEeecCc-eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEE
Confidence            35667775432 2333222 23566899999999999999999999999999987754433 445668899999999999


Q ss_pred             EEEeCCCcEEEeC
Q 003842          780 ASASHDKFVKLWK  792 (792)
Q Consensus       780 aSgs~DG~I~IWd  792 (792)
                      ++|++-|.|.+||
T Consensus       315 ~V~s~qGelQ~FD  327 (545)
T PF11768_consen  315 VVGSEQGELQCFD  327 (545)
T ss_pred             EEEcCCceEEEEE
Confidence            9999999999997

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=0.00063  Score=76.07  Aligned_cols=252  Identities=15%  Similarity=0.132  Sum_probs=167.5

Q ss_pred             EEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEE
Q 003842          536 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC  614 (792)
Q Consensus       536 I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~-Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~  614 (792)
                      +.+++..+......+..+. ....+.+.+++..++.... ...+.+.+... .............-..+++++.+..+++
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~~~p~~i~v~~~~~~vyv   90 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGGVYPAGVAVNPAGNKVYV   90 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ceeeeeccCCCccccceeeCCCCCeEEE
Confidence            5666665555555544333 5567788888865544432 22344444441 2111111111134457888999888888


Q ss_pred             EEeCCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEEecCCCCCeEEEEEcC
Q 003842          615 SCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDP  689 (792)
Q Consensus       615 sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~---dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp  689 (792)
                      +...+..|.+.|..+.++......  ....++++++++.++++..   ++.+.+.|..+.+.+.+......+ ..++++|
T Consensus        91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p  169 (381)
T COG3391          91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP  169 (381)
T ss_pred             ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence            888889999999888877766543  4567899999988888776   689999999999888876554445 8899999


Q ss_pred             CCCEEEEEeCC--eEEEEECCCCCCcc-eEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEc-c
Q 003842          690 SGELLASVSED--SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLT-A  762 (792)
Q Consensus       690 dg~~Las~s~d--~I~IwDl~s~~~~~-~i~~~~~~~~~i~si~fspdg~~L~sgs~d---g~I~IwDl~~~~~~~~~-~  762 (792)
                      +|..++.+..+  .|.++|........ ..............+.+.+++.++++....   +.+.+.|..++...... .
T Consensus       170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~  249 (381)
T COG3391         170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP  249 (381)
T ss_pred             CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence            99977777633  89999976542111 000012223445778999999987777665   48999999998877542 1


Q ss_pred             cCC-CeEEEEEeCCCCEEEEEeCC-CcEEE
Q 003842          763 HEG-LIAALAVSTETGYVASASHD-KFVKL  790 (792)
Q Consensus       763 h~~-~V~sl~fspdg~~LaSgs~D-G~I~I  790 (792)
                      -.. ....+.++|+|+++.+.... +.|.+
T Consensus       250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v  279 (381)
T COG3391         250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSV  279 (381)
T ss_pred             cccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence            112 56678899999988877443 44544

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.35  E-value=1.3e-06  Score=90.84  Aligned_cols=159  Identities=12%  Similarity=0.138  Sum_probs=119.3

Q ss_pred             EEEeCCCcEEEEEcCCCeeEEE-eeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----eEEEEecCCCCCeEEEEE
Q 003842          614 CSCDGDGEIRYWSINNGSCTRV-FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-----ACRLSLQGHTKPIDSVCW  687 (792)
Q Consensus       614 ~sgs~Dg~I~iwdl~~~~~~~~-~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~-----~~~~~l~~h~~~V~sv~~  687 (792)
                      ++.+.+-.|-+-|++++.--.. -+..+....|.-.++.++.|+.+|.|.++|++.+     .+...+. |...|+++..
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~  306 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQI  306 (425)
T ss_pred             ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhh
Confidence            4566688888999988754322 3456667778888899999999999999999875     2333333 8899999887


Q ss_pred             cC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEE--EEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-
Q 003842          688 DP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC--VFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-  762 (792)
Q Consensus       688 sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si--~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~-  762 (792)
                      -. ++.+|++.+.+ +|++||++.-+..+.+..+.+|-+.-..+  .+.+....|++++.|...+||.++.+.++.... 
T Consensus       307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            66 67777777777 99999998775555688888887654443  455677889999999999999999998884333 


Q ss_pred             ----cCCCeEEEEEe
Q 003842          763 ----HEGLIAALAVS  773 (792)
Q Consensus       763 ----h~~~V~sl~fs  773 (792)
                          .+..+.+++|.
T Consensus       387 ~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  387 PYSASEVDIPSVAFD  401 (425)
T ss_pred             CCccccccccceehh
Confidence                23355666664

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.35  E-value=1.6e-06  Score=62.73  Aligned_cols=38  Identities=29%  Similarity=0.543  Sum_probs=36.3

Q ss_pred             eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003842          503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH  540 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWd  540 (792)
                      +.+..+++|.+.|++|+|+|++++|++|+.|+.|+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56789999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.32  E-value=0.00015  Score=83.21  Aligned_cols=181  Identities=8%  Similarity=-0.053  Sum_probs=114.2

Q ss_pred             cCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCeEEEEecCCC
Q 003842          606 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE----NVVSILDAETQACRLSLQGHT  679 (792)
Q Consensus       606 spd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~d----g~I~i~D~~t~~~~~~l~~h~  679 (792)
                      .+||..+..+.-..+.+.++|..+.+....+.  +....+.++++++++++++.+    ..+...+..+...+..+... 
T Consensus       201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~-  279 (635)
T PRK02888        201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA-  279 (635)
T ss_pred             CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH-
Confidence            44554444444445677788888777666543  334557899999998888632    24444444433322222211 


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCC--CcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCc
Q 003842          680 KPIDSVCWDPSGELLASVSEDSVRVWTVGSGS--EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENK  756 (792)
Q Consensus       680 ~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~--~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~~~~  756 (792)
                       .+  ..+.++|++... ..+.|.++|.++..  ....+..+ .-....+.|.++|||+++++++. +.+|.|+|+.+.+
T Consensus       280 -~i--ea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        280 -RI--EEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             -HH--HHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence             01  133457887665 34489999998610  11233333 34567889999999999888776 6799999998865


Q ss_pred             E------------EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          757 T------------MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       757 ~------------~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .            +....-.......+|+.+|..+.|.--|..|..||
T Consensus       355 ~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn  402 (635)
T PRK02888        355 DLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWN  402 (635)
T ss_pred             hhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEe
Confidence            3            21111223344678999998888888899999996

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.30  E-value=1.2e-05  Score=91.64  Aligned_cols=259  Identities=14%  Similarity=0.120  Sum_probs=154.1

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCce-eEEe
Q 003842          515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS-LRTF  593 (792)
Q Consensus       515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~-i~~~  593 (792)
                      ++++||+|..-.||.|-.-|.+.||...+.+.-.....|..+|..+.|+++|..|+++..-|.|.+|.++-.+.. ...+
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~  141 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI  141 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence            567999999989999999999999999887777777889999999999999999999999999999988742221 1111


Q ss_pred             cccC--CC--eEEEEEcCCCCeE-----EEEEeCCCcEE-EEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003842          594 MGHS--AS--VMSLDFHPNKDDL-----ICSCDGDGEIR-YWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI  663 (792)
Q Consensus       594 ~~h~--~~--V~sl~fspd~~~l-----l~sgs~Dg~I~-iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i  663 (792)
                      ..|.  ..  ..|..+++++..+     +++.+++..+- .++.+.....+..     .-.-.+++..+++++.+|+|+.
T Consensus       142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~-----~ksgv~~g~~F~~~~~~GtVyy  216 (1416)
T KOG3617|consen  142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD-----EKSGVPKGTEFLFAGKSGTVYY  216 (1416)
T ss_pred             hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc-----cccCCCCCcEEEEEcCCceEEE
Confidence            1222  22  3344445553322     22233333332 4443321111111     1112466778888899999988


Q ss_pred             EECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC-------------cce------------E-
Q 003842          664 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-------------GEC------------V-  716 (792)
Q Consensus       664 ~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~-------------~~~------------i-  716 (792)
                      .|-... .+...+. .+. ..+-|.+...-|++...+ ++.+|-+.....             ...            + 
T Consensus       217 vdq~g~-~~~V~k~-dS~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr  293 (1416)
T KOG3617|consen  217 VDQNGR-QRTVHKL-DSE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLR  293 (1416)
T ss_pred             EcCCCc-EEEEEEc-cch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccccc
Confidence            885433 2222221 111 123344444444444444 333333221100             000            0 


Q ss_pred             --EEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE-CCCC-------cEEEE---cccCCCeEEEEEeCCCCEEEE
Q 003842          717 --HEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN-MSEN-------KTMTL---TAHEGLIAALAVSTETGYVAS  781 (792)
Q Consensus       717 --~~~-~~~~~~i~si~fspdg~~L~sgs~dg~I~IwD-l~~~-------~~~~~---~~h~~~V~sl~fspdg~~LaS  781 (792)
                        ..+ ...+..+.+++++..+..|+.|...|.+.+|- +.++       ....+   ....+.|+.+.|.+-...++.
T Consensus       294 ~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~av  372 (1416)
T KOG3617|consen  294 KSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAV  372 (1416)
T ss_pred             CCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhh
Confidence              000 01245689999999999999999999999994 3331       11222   234568999999885554443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.29  E-value=1.6e-05  Score=90.68  Aligned_cols=109  Identities=16%  Similarity=0.231  Sum_probs=84.9

Q ss_pred             EEEEEcCCCCEEEEEe----CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003842          516 ICCHFSSDGKLLATGG----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR  591 (792)
Q Consensus       516 ~~lafspdg~~Lasgs----~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~  591 (792)
                      +-..|+|...++|+++    ..|+|.||- ++|++-.... ..-.+++++|+|..-.|+.|=.-|.+.+|...+ .+...
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~ht   95 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHT   95 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC-ceeee
Confidence            4457888888888876    358888884 6666443332 223367799999988899998999999999986 45555


Q ss_pred             EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 003842          592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN  628 (792)
Q Consensus       592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~  628 (792)
                      ....|..+|..+.|+++|..++ ++..-|.|.+|.+.
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~-t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLM-TLDNPGSVHLWRYD  131 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEE-EcCCCceeEEEEee
Confidence            5667999999999999987555 99999999999876

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.28  E-value=0.00012  Score=87.57  Aligned_cols=227  Identities=13%  Similarity=0.172  Sum_probs=132.4

Q ss_pred             CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 003842          553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC  632 (792)
Q Consensus       553 h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~  632 (792)
                      ..+.|.++.|.-+..-|+.+..+|.|.+-|..+.  .+.....-...|.+++|+||...+ +..+.+.+|.+-+- +...
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l-~liT~~~tll~mT~-~f~~  142 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELL-ALITGRQTLLFMTK-DFEP  142 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEE-EEEeCCcEEEEEec-cccc
Confidence            3468999999999999999999999999988763  333344456789999999997644 45555566655322 1111


Q ss_pred             EEEeeCCeeEEEEecCCCEEEEEEcCC----------eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE-----
Q 003842          633 TRVFKGGTAQMRFQPHLGRYLAAAAEN----------VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-----  697 (792)
Q Consensus       633 ~~~~~~~~~~v~~sp~~~~lla~s~dg----------~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~-----  697 (792)
                      +....-   ...-.+. +.++.++...          .....+............-...-++|+|--||.|+++.     
T Consensus       143 i~E~~L---~~d~~~~-sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~  218 (1265)
T KOG1920|consen  143 IAEKPL---DADDERK-SKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE  218 (1265)
T ss_pred             hhcccc---ccccccc-cccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence            111000   0000000 1112222211          11111110000000000011223568999999999983     


Q ss_pred             eC-CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCcEE----EEcccCCCeEE
Q 003842          698 SE-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMSENKTM----TLTAHEGLIAA  769 (792)
Q Consensus       698 s~-d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~---dg~I~IwDl~~~~~~----~~~~h~~~V~s  769 (792)
                      .. ..|+|||-+ +   ..-..-....+.-.+++|-|.|..+++...   ++.|.+|.-+..+.-    .+......|..
T Consensus       219 ~~~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~  294 (1265)
T KOG1920|consen  219 TGTRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE  294 (1265)
T ss_pred             CCceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence            33 279999975 2   111122223344568899999999988754   457999986654322    22333445999


Q ss_pred             EEEeCCCCEEEE---EeCCCcEEEe
Q 003842          770 LAVSTETGYVAS---ASHDKFVKLW  791 (792)
Q Consensus       770 l~fspdg~~LaS---gs~DG~I~IW  791 (792)
                      ++|+.++.+||+   +.....|++|
T Consensus       295 L~Wns~sdiLAv~~~~~e~~~v~lw  319 (1265)
T KOG1920|consen  295 LAWNSNSDILAVVTSNLENSLVQLW  319 (1265)
T ss_pred             eeecCCCCceeeeecccccceEEEE
Confidence            999999999987   4444559998

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.27  E-value=9.7e-05  Score=83.12  Aligned_cols=202  Identities=16%  Similarity=0.177  Sum_probs=129.0

Q ss_pred             EEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe---CC-CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCe
Q 003842          536 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS---FD-KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD  611 (792)
Q Consensus       536 I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs---~D-g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~  611 (792)
                      +.+-|.+ +.....+......+..-+|++++..++...   .. ..++++|++++..... .. ..+.-....|+|||+.
T Consensus       175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i-~~-~~g~~~~P~fspDG~~  251 (425)
T COG0823         175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI-LN-FNGNNGAPAFSPDGSK  251 (425)
T ss_pred             EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee-ec-cCCccCCccCCCCCCE
Confidence            3333444 555555665666778889999998765542   22 4589999987443222 11 3333446789999999


Q ss_pred             EEEEEeCCCc--EEEEEcCCCeeEEEe--eCCeeEEEEecCCCEEEEEEcCC---eEEEEECCCCeEEEEecCCCCCeEE
Q 003842          612 LICSCDGDGE--IRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAEN---VVSILDAETQACRLSLQGHTKPIDS  684 (792)
Q Consensus       612 ll~sgs~Dg~--I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~lla~s~dg---~I~i~D~~t~~~~~~l~~h~~~V~s  684 (792)
                      ++++...||.  |+++|+..+...+..  .+....-.|+|+|.+++.++..+   .|.++|.+......... ....-.+
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~~~~~~  330 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SGGGNSN  330 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cCCCCcC
Confidence            9999988886  555677766644422  22334567999999998887743   68888888775533222 2222227


Q ss_pred             EEEcCCCCEEEEEeC--C--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003842          685 VCWDPSGELLASVSE--D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ  745 (792)
Q Consensus       685 v~~spdg~~Las~s~--d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg  745 (792)
                      -.|+|||++|+..+.  +  .|.++|+.++..   +..+ ........-.|.++++.|+..+..+
T Consensus       331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGK---IRIL-TSTYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             ccCCCCCCEEEEEeccCCceeeEEeccCCCCc---EEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence            789999999998873  3  477788776543   2222 2233344557888888777665543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.27  E-value=0.00027  Score=79.89  Aligned_cols=220  Identities=11%  Similarity=0.118  Sum_probs=120.6

Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE-eCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW-DADN  585 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW-dl~s  585 (792)
                      .+....-.+..+.++|+|++++++ .||...||.....+....     +....++|...+ .+|+-...+.|.|+ ++.+
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE
T ss_pred             cCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcc
Confidence            344445558899999999999995 588888888554444332     234567898844 57777778889996 4432


Q ss_pred             CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC-eeEEEEecCCCEEEEEEcCCeEEEE
Q 003842          586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSIL  664 (792)
Q Consensus       586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-~~~v~~sp~~~~lla~s~dg~I~i~  664 (792)
                        .....+.. ...+..|..   |. +|+..+ ++.|.+||+.+++.++.+... +..+.|++++.+++..+.+ .++|+
T Consensus       100 --~~~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il  170 (443)
T PF04053_consen  100 --EVVKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYIL  170 (443)
T ss_dssp             ---TT------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred             --ccceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEE
Confidence              22222221 123444433   44 443444 458999999999999999877 4899999998888777655 55555


Q ss_pred             ECCCC--------------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEE
Q 003842          665 DAETQ--------------ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV  730 (792)
Q Consensus       665 D~~t~--------------~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~  730 (792)
                      +.+..              ..+..+   ...|.+.+|..+  .|+..+...|+.+  ..|    ....+..-..++.-+.
T Consensus       171 ~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d--~fiYtT~~~lkYl--~~G----e~~~i~~ld~~~yllg  239 (443)
T PF04053_consen  171 KYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED--CFIYTTSNHLKYL--VNG----ETGIIAHLDKPLYLLG  239 (443)
T ss_dssp             EE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TTEEEEE--ETT----EEEEEEE-SS--EEEE
T ss_pred             EecchhcccccccCchhceEEEEEe---cceeEEEEEEcC--EEEEEcCCeEEEE--EcC----CcceEEEcCCceEEEE
Confidence            43322              333322   467899999876  5555555566663  222    2222333345677778


Q ss_pred             EeCCCCEEEEEEcCCeEEEEECC
Q 003842          731 FHPTYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       731 fspdg~~L~sgs~dg~I~IwDl~  753 (792)
                      +.+..+.++....++.|..+.+.
T Consensus       240 y~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  240 YLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EETTTTEEEEE-TT--EEEEE--
T ss_pred             EEccCCEEEEEECCCCEEEEEEC
Confidence            88877788888888888877665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.27  E-value=0.00041  Score=80.22  Aligned_cols=225  Identities=14%  Similarity=0.154  Sum_probs=130.5

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEeccCCCC--EEEEEECC--CCCeEEEEe---------CCCcEEEEeCCCCCceeE
Q 003842          525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL--ITDVRFSP--SMPRLATSS---------FDKTVRVWDADNPGYSLR  591 (792)
Q Consensus       525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~--V~~i~fsp--dg~~Lasgs---------~Dg~V~IWdl~s~~~~i~  591 (792)
                      ..++.++.++.|+.+|.++++.+-.+......  -..+.-+|  .+.+++.++         .+|.|..+|..+ ++.+-
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T-G~~~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVET-GKLLW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCC-Cceee
Confidence            57888889999999999999998877643321  01111122  123555553         467889999988 44444


Q ss_pred             EecccCC--------------------CeE-EEEEcCCCCeEEEEEeCCC------------------cEEEEEcCCCee
Q 003842          592 TFMGHSA--------------------SVM-SLDFHPNKDDLICSCDGDG------------------EIRYWSINNGSC  632 (792)
Q Consensus       592 ~~~~h~~--------------------~V~-sl~fspd~~~ll~sgs~Dg------------------~I~iwdl~~~~~  632 (792)
                      .+.....                    .|. ..++.+.+. +++.++.++                  .|..+|+++++.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~  268 (488)
T cd00216         190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV  268 (488)
T ss_pred             EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence            3322110                    011 233333333 444565454                  799999999999


Q ss_pred             EEEeeCCee---------EEEEe----cCCC---EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 003842          633 TRVFKGGTA---------QMRFQ----PHLG---RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS  696 (792)
Q Consensus       633 ~~~~~~~~~---------~v~~s----p~~~---~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las  696 (792)
                      +..+.....         ...+.    -++.   .+++++.+|.++.+|.++++.+......   ...++.++  ..++.
T Consensus       269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv  343 (488)
T cd00216         269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYL  343 (488)
T ss_pred             EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEE
Confidence            887653211         01111    1222   4677778999999999999988876421   11223333  22222


Q ss_pred             Ee------------------CC-eEEEEECCCCCCcceEEEeecCC--------CceEEEEEeCCCCEEEEEEcCCeEEE
Q 003842          697 VS------------------ED-SVRVWTVGSGSEGECVHELSCNG--------NKFHSCVFHPTYPSLLVIGCYQSLEL  749 (792)
Q Consensus       697 ~s------------------~d-~I~IwDl~s~~~~~~i~~~~~~~--------~~i~si~fspdg~~L~sgs~dg~I~I  749 (792)
                      +.                  .+ .|.-+|+.++   +.+.......        .........-.+..|++++.||.|+.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG---~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a  420 (488)
T cd00216         344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG---KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA  420 (488)
T ss_pred             ccccccccCcccccCCCCCCCceEEEEEeCCCC---cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence            11                  12 6777777776   3333332220        11111111225578999999999999


Q ss_pred             EECCCCcEEE
Q 003842          750 WNMSENKTMT  759 (792)
Q Consensus       750 wDl~~~~~~~  759 (792)
                      +|.++++.+.
T Consensus       421 ld~~tG~~lW  430 (488)
T cd00216         421 FDATTGKELW  430 (488)
T ss_pred             EECCCCceee
Confidence            9999999883

The alignment model contains an 8-bladed beta-propeller.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.24  E-value=0.0014  Score=70.11  Aligned_cols=237  Identities=15%  Similarity=0.172  Sum_probs=144.4

Q ss_pred             EEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeEEeccCCC-------CEEEEEECCCCCeEEEEeC--CC
Q 003842          516 ICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFSPSMPRLATSSF--DK  576 (792)
Q Consensus       516 ~~lafspdg~~Lasgs----------~Dg~I~vWdl~t~~~~~~l~~h~~-------~V~~i~fspdg~~Lasgs~--Dg  576 (792)
                      -.+.++||++.+++++          ..-.|.+||..+......+.-...       ....+.++.|++++++...  --
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence            3466899999888754          344699999999988776543221       1234577888887776643  34


Q ss_pred             cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeEEE----eeCCe----eEEEEec
Q 003842          577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRV----FKGGT----AQMRFQP  647 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~-~~~~~~~----~~~~~----~~v~~sp  647 (792)
                      .|.|.|+.. ++.+..+. -.+   |.-..|.++.-|.+-+.||.+....+. .|+....    |....    ..-.+..
T Consensus       119 SVtVVDl~~-~kvv~ei~-~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~  193 (342)
T PF06433_consen  119 SVTVVDLAA-KKVVGEID-TPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR  193 (342)
T ss_dssp             EEEEEETTT-TEEEEEEE-GTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred             eEEEEECCC-Cceeeeec-CCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence            588888886 45555443 222   222234443446677789999999988 4554422    21111    1234455


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCeEEE--EecCC----------CCCeEEEEEcCCCCEEEEEe--------CC---eEEE
Q 003842          648 HLGRYLAAAAENVVSILDAETQACRL--SLQGH----------TKPIDSVCWDPSGELLASVS--------ED---SVRV  704 (792)
Q Consensus       648 ~~~~lla~s~dg~I~i~D~~t~~~~~--~l~~h----------~~~V~sv~~spdg~~Las~s--------~d---~I~I  704 (792)
                      .++.++..+.+|.|+-.|+.......  .+..-          .+...-+++++....|++.-        .+   .|.+
T Consensus       194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv  273 (342)
T PF06433_consen  194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV  273 (342)
T ss_dssp             TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred             CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence            66788888999999999987764332  22110          12233477777555444321        12   5888


Q ss_pred             EECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEEc
Q 003842          705 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMTLT  761 (792)
Q Consensus       705 wDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~~~  761 (792)
                      ||+.+.   +.+.++.. ...+.++.++.+.+ +|++.+ .++.|.|||..+++.+...
T Consensus       274 ~D~~t~---krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  274 YDLKTH---KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             EETTTT---EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             EECCCC---eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence            888776   66666654 23577899998775 665554 4689999999999988443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.23  E-value=0.00075  Score=70.26  Aligned_cols=198  Identities=14%  Similarity=0.185  Sum_probs=115.4

Q ss_pred             eeeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEeccC-CCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          505 ANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~~~~~l~~h-~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      .+.+.+-...|..|+|+|+.+ ++++....+.|..++. +|+.+..+.-. .+....|++..++.++++.-.++.+.+++
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            455667777799999999765 5566667788888886 47888777643 36688999988887777666689999999


Q ss_pred             CCCCCce-----eEEec-----ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC---CeeEEE-----------eeC
Q 003842          583 ADNPGYS-----LRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRV-----------FKG  638 (792)
Q Consensus       583 l~s~~~~-----i~~~~-----~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~---~~~~~~-----------~~~  638 (792)
                      +......     +..+.     .+...+..|+|.+.++.++++. +..-..+|.+..   ...+..           +..
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceec
Confidence            9542221     11111     2456689999999988888654 454555665543   111111           123


Q ss_pred             CeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCC---------CCeEEEEEcCCCCEEEEEeCCeEEEE
Q 003842          639 GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSEDSVRVW  705 (792)
Q Consensus       639 ~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~sv~~spdg~~Las~s~d~I~Iw  705 (792)
                      ....+.++|..+.+++-+. +..|.++| ..++++..+.-..         ..--.|+|+++|++.++.-.+..++|
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence            4567889999888877766 56888888 5666555443221         23668999999987776655555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.22  E-value=2.7e-06  Score=61.58  Aligned_cols=39  Identities=41%  Similarity=0.557  Sum_probs=36.8

Q ss_pred             CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          544 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       544 ~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      ++++.++.+|...|++|+|+|++.+|++++.|+.|+|||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=6.4e-05  Score=86.25  Aligned_cols=180  Identities=17%  Similarity=0.243  Sum_probs=124.2

Q ss_pred             CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-
Q 003842          555 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-  633 (792)
Q Consensus       555 ~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~-  633 (792)
                      ..++|++++  ++.|+.|+.+|.|++++...  .. .+...|...      ..+| .++++|+.||+|.|..+-+.+.. 
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQG--NP-KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCC--cc-ccccccccc------ccCC-ceEEEecCCCcEEEeeccCCccce
Confidence            456666665  56899999999999999874  33 444445443      3444 46779999999999998877654 


Q ss_pred             -EEeeCCeeEEEEecC-----CCEEEEEEcCCeEEEEECCCC--eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEE
Q 003842          634 -RVFKGGTAQMRFQPH-----LGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVW  705 (792)
Q Consensus       634 -~~~~~~~~~v~~sp~-----~~~lla~s~dg~I~i~D~~t~--~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~Iw  705 (792)
                       ..|+.++..++++|+     .+.+++|+.-| +.++.-+-.  +.-..+....++|.+++|.  |++||-++++.|+||
T Consensus       108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vy  184 (846)
T KOG2066|consen  108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVY  184 (846)
T ss_pred             eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEE
Confidence             456788999999998     46788888888 777654321  1112345567899999996  788998888899999


Q ss_pred             ECCCCCCcceEEEeecCC------CceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003842          706 TVGSGSEGECVHELSCNG------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       706 Dl~s~~~~~~i~~~~~~~------~~i~si~fspdg~~L~sgs~dg~I~IwDl~~  754 (792)
                      |+.+..   .+..+....      .....+.|.++.+ |+ .|...+|+|..++.
T Consensus       185 d~~~~~---~l~~i~~p~~~~R~e~fpphl~W~~~~~-LV-IGW~d~v~i~~I~~  234 (846)
T KOG2066|consen  185 DTPTRQ---RLTNIPPPSQSVRPELFPPHLHWQDEDR-LV-IGWGDSVKICSIKK  234 (846)
T ss_pred             eccccc---eeeccCCCCCCCCcccCCCceEecCCCe-EE-EecCCeEEEEEEec
Confidence            998763   333222221      1234567776654 33 44555788888773

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.21  E-value=0.0012  Score=66.81  Aligned_cols=140  Identities=14%  Similarity=0.080  Sum_probs=91.8

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEE-E
Q 003842          525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS-L  603 (792)
Q Consensus       525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~s-l  603 (792)
                      .+++.|+..+.+...|..+|+.+.+-.- ...|.+-+.- -|++++.|++.|.+++.+..+ +..+..+... +.|.+ .
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~-~~vk~~a   99 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVIL-ETVKVRA   99 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecc-hhheeeeeeh-hhhccce
Confidence            4778888899999899988887654321 2223332222 466899999999999999998 4334433322 22222 2


Q ss_pred             EEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCee---EEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003842          604 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---QMRFQPHLGRYLAAAAENVVSILDAETQ  669 (792)
Q Consensus       604 ~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---~v~~sp~~~~lla~s~dg~I~i~D~~t~  669 (792)
                      ...++ ..+|+.++.|++.+..|.++..++...+.+..   .-++.+..+.++++...|.|.-...+..
T Consensus       100 ~~d~~-~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  100 QCDFD-GGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             EEcCC-CceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            22344 34888999999999999999999887764322   2345665566666666666555444443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.19  E-value=0.00035  Score=77.95  Aligned_cols=259  Identities=13%  Similarity=0.112  Sum_probs=136.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC---CC---
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN---PG---  587 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s---~~---  587 (792)
                      .|+++.|+++..-|++|...|.|.||.+...+...  ......-..+.|.+    +  ...++.-.|-|+..   +.   
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~----~--~~~~~~~~l~di~~r~~~~~~~   74 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRR----F--SLNNSPGKLTDISDRAPPSLKE   74 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccc----c--cccCCCcceEEehhhCCccccc
Confidence            48999999999999999999999999876533221  00001111111111    0  00111122333322   11   


Q ss_pred             --ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--e---------CCeeEEEEec-----CC
Q 003842          588 --YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--K---------GGTAQMRFQP-----HL  649 (792)
Q Consensus       588 --~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~---------~~~~~v~~sp-----~~  649 (792)
                        .+...+....+.|++++.+.-|  +++.|..+|.+.|.|++....+..-  .         ..+.++.|..     |+
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~  152 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG  152 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred             ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence              2334455567999999998554  7889999999999999988776542  1         1234455541     22


Q ss_pred             ---CEEEEEEcCCeEEEEECC--C-CeE----EEEecCCCCCeEEEE-EcCC---------------------CCEEEEE
Q 003842          650 ---GRYLAAAAENVVSILDAE--T-QAC----RLSLQGHTKPIDSVC-WDPS---------------------GELLASV  697 (792)
Q Consensus       650 ---~~lla~s~dg~I~i~D~~--t-~~~----~~~l~~h~~~V~sv~-~spd---------------------g~~Las~  697 (792)
                         -.+++|+..|.+.+|.+.  . +..    ......+.++|..|+ |+.+                     .-+++++
T Consensus       153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv  232 (395)
T PF08596_consen  153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV  232 (395)
T ss_dssp             SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred             ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence               357888999999999764  1 211    122224566666665 3221                     1267777


Q ss_pred             eCCeEEEEECCCCCCcceEEEeecCCCceEEEEE-----eCCCCEEEEEEcCCeEEEEECCCCcEEE-Ecc----cCCCe
Q 003842          698 SEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF-----HPTYPSLLVIGCYQSLELWNMSENKTMT-LTA----HEGLI  767 (792)
Q Consensus       698 s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~f-----spdg~~L~sgs~dg~I~IwDl~~~~~~~-~~~----h~~~V  767 (792)
                      ++..|+|+...+.   +..+...........+++     ...+..|++...+|.|++|.+...+.+. +.-    ....+
T Consensus       233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~  309 (395)
T PF08596_consen  233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL  309 (395)
T ss_dssp             -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred             cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence            7779999998765   333333322223334445     2356678888999999999999988772 222    12234


Q ss_pred             EEEEEeCCCCEEEEEeCC
Q 003842          768 AALAVSTETGYVASASHD  785 (792)
Q Consensus       768 ~sl~fspdg~~LaSgs~D  785 (792)
                      ...+|+++|.+++-.+..
T Consensus       310 ~~ssis~~Gdi~~~~gps  327 (395)
T PF08596_consen  310 SSSSISRNGDIFYWTGPS  327 (395)
T ss_dssp             TT-EE-TTS-EEEE-SSS
T ss_pred             cccEECCCCCEEEEeCcc
Confidence            566778889877766543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=0.00056  Score=76.50  Aligned_cols=220  Identities=15%  Similarity=0.101  Sum_probs=151.6

Q ss_pred             CCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC---CCcEEEEeCCCCCc
Q 003842          513 SKVICCHFSSDGKLLAT-GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGY  588 (792)
Q Consensus       513 ~~V~~lafspdg~~Las-gs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~---Dg~V~IWdl~s~~~  588 (792)
                      ..-.+++++++++.++. ...++.|.+.|..+.+....+..-. ....++|+++++.++++..   +++|.+.|..+ ..
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~  151 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NK  151 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-Ce
Confidence            34567888998885544 4456899999988777776665333 6678999999988777755   67888888877 44


Q ss_pred             eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-E------eeCCeeEEEEecCCCEEEEEEcC---
Q 003842          589 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-V------FKGGTAQMRFQPHLGRYLAAAAE---  658 (792)
Q Consensus       589 ~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~-~------~~~~~~~v~~sp~~~~lla~s~d---  658 (792)
                      .+.+......+ ..+++.|++..++++-..++.|.++|.......+ .      .......+.+.+++.++++....   
T Consensus       152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~  230 (381)
T COG3391         152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS  230 (381)
T ss_pred             EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence            44444433334 8999999999888777789999999988776663 1      12234568899999987776664   


Q ss_pred             CeEEEEECCCCeEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003842          659 NVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY  735 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~~h~~-~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg  735 (792)
                      +.+.+.|..++........-.. ....+.++|+|+++.+....  .+.+.|..+......+.........+..+++.+..
T Consensus       231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence            5999999999877765222122 45678899999988877544  88888887653222222222223335555555543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.14  E-value=0.0007  Score=70.50  Aligned_cols=197  Identities=16%  Similarity=0.232  Sum_probs=110.9

Q ss_pred             EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003842          592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAE  667 (792)
Q Consensus       592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~  667 (792)
                      .+.+-...+..|+|+|+.+.|+++....+.|..++.. |+.++.+.    +....+++..++.++++--.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4445566799999999999999999999999999974 77777764    345668887665444433348889988873


Q ss_pred             CC------eEEEEec-----CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC--CCCcceEEE------eecCCCceE
Q 003842          668 TQ------ACRLSLQ-----GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS--GSEGECVHE------LSCNGNKFH  727 (792)
Q Consensus       668 t~------~~~~~l~-----~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s--~~~~~~i~~------~~~~~~~i~  727 (792)
                      ..      .....+.     .++..+-.++|++.++.|+.+-+. -..||.+..  ......+..      .......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            31      1111111     244568999999987766666655 555666543  111111111      112334578


Q ss_pred             EEEEeCCCCEEEEEEc-CCeEEEEECCCCcEE---EEcc--c-----CCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          728 SCVFHPTYPSLLVIGC-YQSLELWNMSENKTM---TLTA--H-----EGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       728 si~fspdg~~L~sgs~-dg~I~IwDl~~~~~~---~~~~--h-----~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      .++++|....|++.+. ...|.++| .+++.+   .+..  |     -.....|+|.++|++.+ .++-+..++|
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence            9999998766666555 46888899 555554   2222  1     12467999999986555 4577766665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.06  E-value=0.0034  Score=66.74  Aligned_cols=223  Identities=16%  Similarity=0.185  Sum_probs=124.4

Q ss_pred             cCCCCEEEEEeCCCeEEEEECCC-CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE-------
Q 003842          521 SSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-------  592 (792)
Q Consensus       521 spdg~~Lasgs~Dg~I~vWdl~t-~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~-------  592 (792)
                      ...++.|+.|+.+| |++|++.. .+......  ...|..+...++-+.|++-+ |+.++++++..-......       
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence            34577999999998 89999833 33333332  23399999999877776665 499999999752211100       


Q ss_pred             ------ecccCCCeEEEE--EcCCCCeEEEEEeCCCcEEEEEcCCC-----eeEEEee--CCeeEEEEecCCCEEEEEEc
Q 003842          593 ------FMGHSASVMSLD--FHPNKDDLICSCDGDGEIRYWSINNG-----SCTRVFK--GGTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       593 ------~~~h~~~V~sl~--fspd~~~ll~sgs~Dg~I~iwdl~~~-----~~~~~~~--~~~~~v~~sp~~~~lla~s~  657 (792)
                            .......+..++  -...+...++++ ....|.+|.+...     +..+.+.  .....+.|.  ++.++++. 
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-  155 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-  155 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-
Confidence                  111223344444  112333344333 3558888877653     3444443  456667777  45666665 


Q ss_pred             CCeEEEEECCCCeEEEEecCC------------CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCc
Q 003842          658 ENVVSILDAETQACRLSLQGH------------TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNK  725 (792)
Q Consensus       658 dg~I~i~D~~t~~~~~~l~~h------------~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~  725 (792)
                      .+...++|+.++.....+...            ..++..+.. +++++|++ .++.-.+.|. .|.... ...+.-. ..
T Consensus       156 ~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~-~G~~~r-~~~i~W~-~~  230 (275)
T PF00780_consen  156 SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNK-NGEPSR-KSTIQWS-SA  230 (275)
T ss_pred             CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcC-CCCcCc-ccEEEcC-Cc
Confidence            455788898876554333211            123333333 34566654 3343333343 232211 1122221 24


Q ss_pred             eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE
Q 003842          726 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT  759 (792)
Q Consensus       726 i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~  759 (792)
                      ...+++  ...||++.+. +.|.||++.+++++.
T Consensus       231 p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ  261 (275)
T PF00780_consen  231 PQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQ  261 (275)
T ss_pred             hhEEEE--ECCEEEEECC-CEEEEEECcCCcEEE
Confidence            445555  3457777666 559999999998773

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.05  E-value=0.0036  Score=72.92  Aligned_cols=184  Identities=11%  Similarity=0.052  Sum_probs=112.9

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccCC-CCEE---E-------EEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLIT---D-------VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT  592 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~-~~V~---~-------i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~  592 (792)
                      +..|++++.++.|+-+|..+|+.+-.+.... ..+.   +       +++  .+..|++++.|+.|.-+|..+ ++.+-.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~T-Gk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKT-GKVVWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCC-CCEEee
Confidence            4477777788899999999999887765321 1111   1       122  234678888999999999988 554443


Q ss_pred             ecc--cC--CCeEE-EEEcCCCCeEEEEEe-----CCCcEEEEEcCCCeeEEEeeCCe----------------------
Q 003842          593 FMG--HS--ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGGT----------------------  640 (792)
Q Consensus       593 ~~~--h~--~~V~s-l~fspd~~~ll~sgs-----~Dg~I~iwdl~~~~~~~~~~~~~----------------------  640 (792)
                      +..  +.  ..+++ ..+. + ..+++..+     .+|.|..+|.++|+.+..+....                      
T Consensus       146 ~~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw  223 (527)
T TIGR03075       146 KKNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW  223 (527)
T ss_pred             cccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence            331  11  11211 1111 2 33443222     26899999999999886643210                      


Q ss_pred             -------------eEEEEecCCCEEEEEEcC-----C-----------eEEEEECCCCeEEEEecCCCCCeE--------
Q 003842          641 -------------AQMRFQPHLGRYLAAAAE-----N-----------VVSILDAETQACRLSLQGHTKPID--------  683 (792)
Q Consensus       641 -------------~~v~~sp~~~~lla~s~d-----g-----------~I~i~D~~t~~~~~~l~~h~~~V~--------  683 (792)
                                   ..+.+.+..+.++.+..+     +           .|.-.|+++++.+..+......+.        
T Consensus       224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p  303 (527)
T TIGR03075       224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM  303 (527)
T ss_pred             CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence                         013566666777776632     1           688889999999887765222211        


Q ss_pred             -EEEEcCCCC---EEEEEeCC-eEEEEECCCCCC
Q 003842          684 -SVCWDPSGE---LLASVSED-SVRVWTVGSGSE  712 (792)
Q Consensus       684 -sv~~spdg~---~Las~s~d-~I~IwDl~s~~~  712 (792)
                       -+.+..+|+   .++.+..+ .+++.|-++++.
T Consensus       304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             EEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence             122334666   66677777 899999988743

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.00  E-value=0.0019  Score=68.61  Aligned_cols=215  Identities=15%  Similarity=0.145  Sum_probs=123.0

Q ss_pred             CCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE---------
Q 003842          564 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---------  634 (792)
Q Consensus       564 pdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~---------  634 (792)
                      ..++.|+.|+.+| |++|++..........  +...|..+...++-+.+++.+  |+.++++++.......         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence            3567899999999 9999994323333332  223399999998877666554  6999999987654333         


Q ss_pred             ------EeeCCeeEEEEe----cCCCEEEEEEcCCeEEEEECCCC-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003842          635 ------VFKGGTAQMRFQ----PHLGRYLAAAAENVVSILDAETQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSE  699 (792)
Q Consensus       635 ------~~~~~~~~v~~s----p~~~~lla~s~dg~I~i~D~~t~-----~~~~~l~~h~~~V~sv~~spdg~~Las~s~  699 (792)
                            .+.....+..|.    ..+...+++.....|.+|.....     +....+. -...+.+++|.  ++.|+.+..
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~  156 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS  156 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence                  111111222232    44556667777778888877653     3444444 44778899998  677888888


Q ss_pred             CeEEEEECCCCCCcceEEEeecCC---------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEE
Q 003842          700 DSVRVWTVGSGSEGECVHELSCNG---------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAA  769 (792)
Q Consensus       700 d~I~IwDl~s~~~~~~i~~~~~~~---------~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~s  769 (792)
                      +...+.|+.++.. ..+.......         .....+.--+++.+|++.  +..-.+.|....... ....-...+.+
T Consensus       157 ~~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~  233 (275)
T PF00780_consen  157 KGFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQS  233 (275)
T ss_pred             CceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhE
Confidence            8889999986543 2222111111         112222223345555543  333333344332222 11122334556


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEeC
Q 003842          770 LAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       770 l~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +++.  ..||+..+. +.|.||+
T Consensus       234 ~~~~--~pyli~~~~-~~iEV~~  253 (275)
T PF00780_consen  234 VAYS--SPYLIAFSS-NSIEVRS  253 (275)
T ss_pred             EEEE--CCEEEEECC-CEEEEEE
Confidence            6663  447776655 4588874

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.97  E-value=0.0022  Score=71.65  Aligned_cols=205  Identities=14%  Similarity=0.108  Sum_probs=120.5

Q ss_pred             ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe--cc------CCCCEEEEEECC-----CC-
Q 003842          501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EE------HSSLITDVRFSP-----SM-  566 (792)
Q Consensus       501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l--~~------h~~~V~~i~fsp-----dg-  566 (792)
                      .|.....+....++|++++.|.-| ++|.|..+|.+.|.|+.....+..-  ..      ....|+++.|.-     |+ 
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            367777788889999999998666 9999999999999999877766652  22      345688888863     33 


Q ss_pred             --CeEEEEeCCCcEEEEeCCC--CC-ce---eEEecccCCCeEEEEEc-CCC--------------------CeEEEEEe
Q 003842          567 --PRLATSSFDKTVRVWDADN--PG-YS---LRTFMGHSASVMSLDFH-PNK--------------------DDLICSCD  617 (792)
Q Consensus       567 --~~Lasgs~Dg~V~IWdl~s--~~-~~---i~~~~~h~~~V~sl~fs-pd~--------------------~~ll~sgs  617 (792)
                        -+|++|...|.+.+|.+.-  .+ ..   ......+.+.|..|... .+.                    +.+++++ 
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-  232 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-  232 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-
Confidence              3789999999999998852  12 11   11222456677666632 221                    1244344 


Q ss_pred             CCCcEEEEEcCCCeeEEEe-eCCeeE--EEEe-----cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC----CCeEEE
Q 003842          618 GDGEIRYWSINNGSCTRVF-KGGTAQ--MRFQ-----PHLGRYLAAAAENVVSILDAETQACRLSLQGHT----KPIDSV  685 (792)
Q Consensus       618 ~Dg~I~iwdl~~~~~~~~~-~~~~~~--v~~s-----p~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~----~~V~sv  685 (792)
                      .+..|+++...+.+..... +.+..+  +++.     ..+..|++...+|.|++|.+-..+.+..+.-..    ..+...
T Consensus       233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s  312 (395)
T PF08596_consen  233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS  312 (395)
T ss_dssp             -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred             cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence            3788999999887766543 332222  3342     244567778889999999999988887766432    234557


Q ss_pred             EEcCCCCEEEEEeCCeEEEEEC
Q 003842          686 CWDPSGELLASVSEDSVRVWTV  707 (792)
Q Consensus       686 ~~spdg~~Las~s~d~I~IwDl  707 (792)
                      +++++|+.++-.+...+.+|.+
T Consensus       313 sis~~Gdi~~~~gpsE~~l~sv  334 (395)
T PF08596_consen  313 SISRNGDIFYWTGPSEIQLFSV  334 (395)
T ss_dssp             EE-TTS-EEEE-SSSEEEEEEE
T ss_pred             EECCCCCEEEEeCcccEEEEEE
Confidence            7889999888887775555444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.95  E-value=0.0096  Score=67.21  Aligned_cols=189  Identities=14%  Similarity=0.131  Sum_probs=100.8

Q ss_pred             eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC-----ceeEEecccCCCeEEEEEcCCC
Q 003842          535 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-----YSLRTFMGHSASVMSLDFHPNK  609 (792)
Q Consensus       535 ~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~-----~~i~~~~~h~~~V~sl~fspd~  609 (792)
                      .|.||+.. |+.+..+.-..+.|.++.|+.+ ..|++...||.+++||+....     ..+....-....|..+.+..+|
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence            48888854 5666666555589999999885 466677799999999996311     0111111111222233333333


Q ss_pred             CeEEEEEeCCCcEEEEEcCCCe-eEEEee---CCee----------EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 003842          610 DDLICSCDGDGEIRYWSINNGS-CTRVFK---GGTA----------QMRFQPHLGRYLAAAAENVVSILDAETQACRLSL  675 (792)
Q Consensus       610 ~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~---~~~~----------~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l  675 (792)
                        ++ .-..++.|.+.+-.... ..+.+.   ....          ...+..+....+....++.+.+.+....+.   +
T Consensus       140 --iv-vLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i  213 (410)
T PF04841_consen  140 --IV-VLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I  213 (410)
T ss_pred             --EE-EECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence              22 22234444444322211 111110   0000          012334444444444555555444332211   1


Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC-CCceEEEEEeCCC
Q 003842          676 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTY  735 (792)
Q Consensus       676 ~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~-~~~i~si~fspdg  735 (792)
                      . ..+++..|++||+|++||....+ .+.|++..-.   +.+.++... ......+.|.-+.
T Consensus       214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCC
Confidence            1 24679999999999999998887 7777765432   344444433 3455667776654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.94  E-value=0.0011  Score=72.37  Aligned_cols=207  Identities=14%  Similarity=0.088  Sum_probs=115.1

Q ss_pred             cEEEEeCCCCCceeEEecc-cCCCeEEEE---EcCC---CCeEEEEEeC----------CCcEEEEEcCCC-----eeEE
Q 003842          577 TVRVWDADNPGYSLRTFMG-HSASVMSLD---FHPN---KDDLICSCDG----------DGEIRYWSINNG-----SCTR  634 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~~~~~-h~~~V~sl~---fspd---~~~ll~sgs~----------Dg~I~iwdl~~~-----~~~~  634 (792)
                      .|+|.|..+ ...+..+.- ....+++++   |..+   ...+|+.|..          .|.|.++++...     +...
T Consensus         3 ~i~l~d~~~-~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    3 SIRLVDPTT-FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             EEEEEETTT-SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             EEEEEeCCC-CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            477777765 334433331 223344443   3322   1456666543          288999999984     2222


Q ss_pred             ----EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEec-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 003842          635 ----VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA-CRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTV  707 (792)
Q Consensus       635 ----~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~-~~~~l~-~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl  707 (792)
                          .+++.+.+++..  +++ ++++.++.|.+|++...+ ....-. .....+.++...  +++|++|... .|.++.+
T Consensus        82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence                234555555544  566 555556899999998776 433322 123356666654  5688888765 6666644


Q ss_pred             CCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------C--cEE--EEcccCCCeEEE---EE
Q 003842          708 GSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-------N--KTM--TLTAHEGLIAAL---AV  772 (792)
Q Consensus       708 ~s~~~-~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~-------~--~~~--~~~~h~~~V~sl---~f  772 (792)
                      ..... ...+. -......++++.|-.+++.++++..+|.|.++....       +  +..  ........|+++   ++
T Consensus       157 ~~~~~~l~~va-~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l  235 (321)
T PF03178_consen  157 DEENNKLILVA-RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL  235 (321)
T ss_dssp             ETTTE-EEEEE-EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred             EccCCEEEEEE-ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence            43211 12222 223345688888886767999999999999998763       2  222  223345667777   44


Q ss_pred             eC--CCC------EEEEEeCCCcEEE
Q 003842          773 ST--ETG------YVASASHDKFVKL  790 (792)
Q Consensus       773 sp--dg~------~LaSgs~DG~I~I  790 (792)
                      .+  .+.      .++.++.+|.|.+
T Consensus       236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  236 IPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             S--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             eecCCCCcccccceEEEEecCCEEEE
Confidence            44  122      4777888998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.91  E-value=0.00012  Score=82.22  Aligned_cols=81  Identities=20%  Similarity=0.270  Sum_probs=67.4

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCce
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS  589 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~  589 (792)
                      .....|.|++++|+.+.|+.|+.||+|++||...+...  +....-..+.++|+|+|.+|++|+..|.+.+||+.-....
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~  334 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK  334 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence            56788999999999999999999999999998766333  3345566899999999999999999999999999753333


Q ss_pred             eEE
Q 003842          590 LRT  592 (792)
Q Consensus       590 i~~  592 (792)
                      +..
T Consensus       335 ~qL  337 (545)
T PF11768_consen  335 MQL  337 (545)
T ss_pred             eee
Confidence            333

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=0.041  Score=57.14  Aligned_cols=270  Identities=11%  Similarity=0.027  Sum_probs=147.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC--CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003842          513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS--SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL  590 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~--~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i  590 (792)
                      +-+..+.|+.+  ++..+..+.-++|+|+.+......+..-.  +.-.+  |.-.|++.+++..|.-+.++|+.++..+.
T Consensus        87 ~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          87 DLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCce
Confidence            44566677655  77788888889999998765444333211  22333  34468899999877778899998766544


Q ss_pred             E--EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---eEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003842          591 R--TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD  665 (792)
Q Consensus       591 ~--~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~---~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D  665 (792)
                      .  .+.........++++-  + ..+.+..|+-+.+.|+....   .+..+......-..++.+++.++...+..+.+.|
T Consensus       163 lagrya~~~~d~~~v~ISG--n-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd  239 (370)
T COG5276         163 LAGRYALPGGDTHDVAISG--N-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVD  239 (370)
T ss_pred             eeeeeccCCCCceeEEEec--C-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEEe
Confidence            3  3333344446777763  3 44466679999999997653   3333333323333444445666666666777888


Q ss_pred             CCCCeEEEEecC-CCCCeEEE-EEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003842          666 AETQACRLSLQG-HTKPIDSV-CWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG  742 (792)
Q Consensus       666 ~~t~~~~~~l~~-h~~~V~sv-~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs  742 (792)
                      ..+.+....+.. ....+.++ .|.-.+++......+ .+-+.|+...........+...+..-..+...  +.++..+.
T Consensus       240 ~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiad  317 (370)
T COG5276         240 VSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIAD  317 (370)
T ss_pred             cCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEecc
Confidence            777653333321 11222222 233345555555555 66677776543333333333222222333222  22233332


Q ss_pred             cCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          743 CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       743 ~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .+ ...+.|....+-. ...+....+.+.+.+-+.+++.+...++.+.||+
T Consensus       318 kn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~  367 (370)
T COG5276         318 KN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE  367 (370)
T ss_pred             CC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence            22 3334444333222 1122222334444455566888888899999986

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.85  E-value=0.0067  Score=66.19  Aligned_cols=212  Identities=12%  Similarity=0.141  Sum_probs=123.5

Q ss_pred             CeEEEEECCCCceeEEecc-CCCCEEE---EEECCC----CCeEEEEeC----------CCcEEEEeCCCC---CceeEE
Q 003842          534 KKAVLWHTDTLKSKTNLEE-HSSLITD---VRFSPS----MPRLATSSF----------DKTVRVWDADNP---GYSLRT  592 (792)
Q Consensus       534 g~I~vWdl~t~~~~~~l~~-h~~~V~~---i~fspd----g~~Lasgs~----------Dg~V~IWdl~s~---~~~i~~  592 (792)
                      ..|+|.|..+.+.+..+.- ....|++   +.|..+    ..+|++|..          .|.|.+|++.+.   ...+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3688888888887766552 2233443   444433    457777743          288999999873   122222


Q ss_pred             --ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEE--eeCCeeEEEEecCCCEEEEEEcCCeEEEE--E
Q 003842          593 --FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRV--FKGGTAQMRFQPHLGRYLAAAAENVVSIL--D  665 (792)
Q Consensus       593 --~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~~~~--~~~~~~~v~~sp~~~~lla~s~dg~I~i~--D  665 (792)
                        -....+.|++|+-.  +++++++.  ++.|++|++...+ ....  +......+.....+++++++.....|.++  +
T Consensus        82 i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred             EEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence              23467889999877  34455443  6899999998887 4443  33445556666667899999988777766  5


Q ss_pred             CCCCeEEEE-ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-----C---CcceEEEeecCCCceEEE---EEe
Q 003842          666 AETQACRLS-LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-----S---EGECVHELSCNGNKFHSC---VFH  732 (792)
Q Consensus       666 ~~t~~~~~~-l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~-----~---~~~~i~~~~~~~~~i~si---~fs  732 (792)
                      .+..+.... -.....++++++|-.+++.++++..+ .|.++.....     .   ....+..+. .+..|+++   .+.
T Consensus       158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~  236 (321)
T PF03178_consen  158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLI  236 (321)
T ss_dssp             TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS
T ss_pred             ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEee
Confidence            433322222 12245668899998666777777777 8888877531     1   111222332 23456666   444


Q ss_pred             C--CCC------EEEEEEcCCeEEEE
Q 003842          733 P--TYP------SLLVIGCYQSLELW  750 (792)
Q Consensus       733 p--dg~------~L~sgs~dg~I~Iw  750 (792)
                      |  .+.      .++.++.+|.|.+.
T Consensus       237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  237 PRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ecCCCCcccccceEEEEecCCEEEEE
Confidence            4  222      48888888888743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.83  E-value=5.2e-06  Score=92.63  Aligned_cols=196  Identities=18%  Similarity=0.238  Sum_probs=133.2

Q ss_pred             CCEEEEEECCCC--CeEEEEeCCCcEEEEeCCCCCce-eEEecccCCCeEEEEEcCCCCeEEEEEe----CCCcEEEEEc
Q 003842          555 SLITDVRFSPSM--PRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSI  627 (792)
Q Consensus       555 ~~V~~i~fspdg--~~Lasgs~Dg~V~IWdl~s~~~~-i~~~~~h~~~V~sl~fspd~~~ll~sgs----~Dg~I~iwdl  627 (792)
                      ..+.|+++.-+.  ..+++|..+|.|.+-.++.+... .....++...+++++|++-+...+|+|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            446677666543  47889999999999988764433 4555678889999999987767776663    3678999999


Q ss_pred             CCCe--eEE--Ee----eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEecCCCCCeEEEEEcC-CCCEEEEE
Q 003842          628 NNGS--CTR--VF----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA-CRLSLQGHTKPIDSVCWDP-SGELLASV  697 (792)
Q Consensus       628 ~~~~--~~~--~~----~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~-~~~~l~~h~~~V~sv~~sp-dg~~Las~  697 (792)
                      .++-  ...  .|    ..+...++|..+.+.+++|.....+.++|++-.. ....+  .+..|..+.++| .+.|+++.
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence            8872  111  12    2345678888887888888888999999998432 11111  234567788888 88899998


Q ss_pred             eCCeEEEEEC-CCCCCcceEEEeecCC----CceEEEEEeCCCC-EEEEEEcC-CeEEEEECCC
Q 003842          698 SEDSVRVWTV-GSGSEGECVHELSCNG----NKFHSCVFHPTYP-SLLVIGCY-QSLELWNMSE  754 (792)
Q Consensus       698 s~d~I~IwDl-~s~~~~~~i~~~~~~~----~~i~si~fspdg~-~L~sgs~d-g~I~IwDl~~  754 (792)
                      .++.|.+||. +..+  ..+..+....    ..+..++|+|... .+++...| ++|++||+..
T Consensus       215 ~dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  215 SDGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ccCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            8779999994 3221  2222222222    2488999999653 34444444 6899998853

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.81  E-value=0.011  Score=67.01  Aligned_cols=217  Identities=13%  Similarity=0.100  Sum_probs=121.5

Q ss_pred             EEEEEECCCCCeEEEE-eCCC----cEEEEeCCCCCceeE-EecccCCCeEEEEEcCCCCeEEEEEeCCC----------
Q 003842          557 ITDVRFSPSMPRLATS-SFDK----TVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDG----------  620 (792)
Q Consensus       557 V~~i~fspdg~~Lasg-s~Dg----~V~IWdl~s~~~~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~Dg----------  620 (792)
                      +..+.++|++++||.+ +..|    .|+|+|++++ ..+. .+...  ....+.|.+++..++++...+.          
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            4467899999988766 4444    4999999984 4333 22222  1224999999888887775442          


Q ss_pred             cEEEEEcCCCeeE--EEeeC--C---eeEEEEecCCCEEEEEEc---C-CeEEEEECCCC-----eEEEEecCCCCCeEE
Q 003842          621 EIRYWSINNGSCT--RVFKG--G---TAQMRFQPHLGRYLAAAA---E-NVVSILDAETQ-----ACRLSLQGHTKPIDS  684 (792)
Q Consensus       621 ~I~iwdl~~~~~~--~~~~~--~---~~~v~~sp~~~~lla~s~---d-g~I~i~D~~t~-----~~~~~l~~h~~~V~s  684 (792)
                      .|++|.+.+....  ..|..  .   ...+..+.++.++++...   + ..|++.|+...     ..........+....
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~  282 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY  282 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence            3788888776432  33322  2   346778999998876554   3 46888898874     333333323333333


Q ss_pred             EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-C--eEEEEECC-CCc
Q 003842          685 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-Q--SLELWNMS-ENK  756 (792)
Q Consensus       685 v~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-g--~I~IwDl~-~~~  756 (792)
                      +... .+.+++....+    .|...++...........+..+...+.-..+...+.+|++...+ +  .|++|++. +..
T Consensus       283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~  361 (414)
T PF02897_consen  283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE  361 (414)
T ss_dssp             EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred             EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence            4443 44444444343    56667777654322333444455443333444455566655544 3  79999999 554


Q ss_pred             EEEEcc-cCCCeEEEEEeCCCC
Q 003842          757 TMTLTA-HEGLIAALAVSTETG  777 (792)
Q Consensus       757 ~~~~~~-h~~~V~sl~fspdg~  777 (792)
                      ...+.. -.+.|..+...+++.
T Consensus       362 ~~~~~~p~~g~v~~~~~~~~~~  383 (414)
T PF02897_consen  362 SREIPLPEAGSVSGVSGDFDSD  383 (414)
T ss_dssp             EEEEESSSSSEEEEEES-TT-S
T ss_pred             EeeecCCcceEEeccCCCCCCC
Confidence            443332 334455555555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.81  E-value=0.0068  Score=65.32  Aligned_cols=216  Identities=11%  Similarity=0.109  Sum_probs=128.2

Q ss_pred             EEECCCCCe-EEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-
Q 003842          560 VRFSPSMPR-LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-  637 (792)
Q Consensus       560 i~fspdg~~-Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-  637 (792)
                      ..|.++... +++--..+.|.-|+..++..  ..+. +...+.++.....+..++ ++  +..+++++.+.+..+..+. 
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g~Lv-~~--~~g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGGRLI-AC--EHGVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCCeEE-EE--ccccEEEeccCCceeEEecc
Confidence            356666664 44445567788888875333  2222 233344555444444444 44  4456777776665533321 


Q ss_pred             -------CCeeEEEEecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003842          638 -------GGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE  699 (792)
Q Consensus       638 -------~~~~~v~~sp~~~~lla~s~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~  699 (792)
                             ...+...+.|++...+....           -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+.+..
T Consensus       104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT  182 (307)
T COG3386         104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT  182 (307)
T ss_pred             ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence                   23455777888666554333           134555555 45555555555556678999999988777766


Q ss_pred             C--eEEEEECCC--CCCc--ceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEcccCCCeEEEE
Q 003842          700 D--SVRVWTVGS--GSEG--ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTAHEGLIAALA  771 (792)
Q Consensus       700 d--~I~IwDl~s--~~~~--~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~~~~h~~~V~sl~  771 (792)
                      .  .|..|++..  +...  .....+....+..-.++...+|.+.+++...| .|.+|+.. ++++ .+.-....+++++
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~  261 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA  261 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence            4  777777652  2111  11222333456677788888998776555554 99999999 6666 4444447788888


Q ss_pred             Ee-CCCCEEEEEe
Q 003842          772 VS-TETGYVASAS  783 (792)
Q Consensus       772 fs-pdg~~LaSgs  783 (792)
                      |- ++.+.|+..+
T Consensus       262 FgG~~~~~L~iTs  274 (307)
T COG3386         262 FGGPDLNTLYITS  274 (307)
T ss_pred             EeCCCcCEEEEEe
Confidence            85 4455544433

>PRK10115 protease 2; Provisional

Probab=97.80  E-value=0.029  Score=67.56  Aligned_cols=237  Identities=8%  Similarity=0.004  Sum_probs=122.8

Q ss_pred             CeEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC------CcEEEEe
Q 003842          514 KVICCHFSSDGKLLATGGH-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWD  582 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~-----Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D------g~V~IWd  582 (792)
                      .+..+.|+|||++||.+..     ...|++.|+.+++.+........  ..++|.+|++.|+.+..+      ..|++|+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            3667889999999887643     23588999988864333222222  459999998866665432      3588888


Q ss_pred             CCCCC-ceeEEecccCCCeE-EEEEcCCCCeEEEEEeC--CCcEEEEEcC--CCeeEEEe--eCCeeEEEEecCCCEEEE
Q 003842          583 ADNPG-YSLRTFMGHSASVM-SLDFHPNKDDLICSCDG--DGEIRYWSIN--NGSCTRVF--KGGTAQMRFQPHLGRYLA  654 (792)
Q Consensus       583 l~s~~-~~i~~~~~h~~~V~-sl~fspd~~~ll~sgs~--Dg~I~iwdl~--~~~~~~~~--~~~~~~v~~sp~~~~lla  654 (792)
                      +.++. .....+........ .+..+.++..+++.+..  ++.+.+|+..  .+.....+  ..... ..+...++.+++
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ly~  284 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHE-YSLDHYQHRFYL  284 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCE-EEEEeCCCEEEE
Confidence            88742 22333333333333 33334477766654433  4678999853  33322222  12221 222233345554


Q ss_pred             EEcC----CeEEEEECCCCeEEEEecCC-C-CCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEee-cCCC
Q 003842          655 AAAE----NVVSILDAETQACRLSLQGH-T-KPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELS-CNGN  724 (792)
Q Consensus       655 ~s~d----g~I~i~D~~t~~~~~~l~~h-~-~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~~~~~~i~~~~-~~~~  724 (792)
                      .+..    ..|...++........+..+ . ..|..+.+.. +.++++...+   .+++++...+    .+..+. ....
T Consensus       285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~  359 (686)
T PRK10115        285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPA  359 (686)
T ss_pred             EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCc
Confidence            4442    24544555421111223333 3 3677788873 3344444444   5666665432    222322 1122


Q ss_pred             ceEEEEEe--CCCC-EEEEEEcC---CeEEEEECCCCcEE
Q 003842          725 KFHSCVFH--PTYP-SLLVIGCY---QSLELWNMSENKTM  758 (792)
Q Consensus       725 ~i~si~fs--pdg~-~L~sgs~d---g~I~IwDl~~~~~~  758 (792)
                      .+..+.++  +++. .+++.++.   +.|+.||+.+++..
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~  399 (686)
T PRK10115        360 YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR  399 (686)
T ss_pred             eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence            23333344  4444 34333332   58999999877644

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.78  E-value=0.0042  Score=74.07  Aligned_cols=213  Identities=9%  Similarity=0.108  Sum_probs=128.3

Q ss_pred             CeEEEE-eCCCcEEEEeCCCCCceeEEecccCCC-eEEEEEcC-----CCCeEEEEEeCCCcEEEEEcCCCe--eEE---
Q 003842          567 PRLATS-SFDKTVRVWDADNPGYSLRTFMGHSAS-VMSLDFHP-----NKDDLICSCDGDGEIRYWSINNGS--CTR---  634 (792)
Q Consensus       567 ~~Lasg-s~Dg~V~IWdl~s~~~~i~~~~~h~~~-V~sl~fsp-----d~~~ll~sgs~Dg~I~iwdl~~~~--~~~---  634 (792)
                      ++|+.. .....|+-.|++. ++.+..+..+... |..++-..     +....| .|-.+..|+.||.+-..  ++.   
T Consensus       494 ~mil~~~~~~~~ly~mDLe~-GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLER-GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ceEeecCCCCCceEEEecCC-CcEEEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeeccc
Confidence            344443 3457799999998 7888888877654 55554321     112223 67779999999998643  331   


Q ss_pred             -EeeC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC--CC
Q 003842          635 -VFKG-GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG--SG  710 (792)
Q Consensus       635 -~~~~-~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~--s~  710 (792)
                       .+.. ....+......++|++|+.+|.|++||-...+....+.+-..+|..|+.+.||++|++.+...|.+++..  .+
T Consensus       572 k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~~~~g  651 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTLIKDG  651 (794)
T ss_pred             cccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEeeecC
Confidence             1211 1222334455689999999999999995443444455567889999999999999999888888888753  11


Q ss_pred             C---------------C--cceEEEee----------cCCCceEEEEEeC---CCCEEEEEEcCCeEEEEECCC---C--
Q 003842          711 S---------------E--GECVHELS----------CNGNKFHSCVFHP---TYPSLLVIGCYQSLELWNMSE---N--  755 (792)
Q Consensus       711 ~---------------~--~~~i~~~~----------~~~~~i~si~fsp---dg~~L~sgs~dg~I~IwDl~~---~--  755 (792)
                      +               .  ++.+..-.          +....++...|+-   .....++++....+.+|+++.   +  
T Consensus       652 ~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~kV~~g~~  731 (794)
T PF08553_consen  652 KNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKKVKRGKK  731 (794)
T ss_pred             CccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHHHhCCCC
Confidence            0               0  01111000          1112234445542   123455556667999999853   2  


Q ss_pred             cEEEEcccCCCeEEEE--EeCCCCEEEE
Q 003842          756 KTMTLTAHEGLIAALA--VSTETGYVAS  781 (792)
Q Consensus       756 ~~~~~~~h~~~V~sl~--fspdg~~LaS  781 (792)
                      .+..+......|.+-.  |..|.++|++
T Consensus       732 ~~Y~ikry~~~V~~dnF~fg~d~~viva  759 (794)
T PF08553_consen  732 DPYQIKRYDENVVADNFKFGSDKNVIVA  759 (794)
T ss_pred             CceEEEEcCCceEEccceeCCCCcEEEE
Confidence            3344544555565543  4445555544

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.76  E-value=0.0086  Score=67.59  Aligned_cols=188  Identities=8%  Similarity=0.090  Sum_probs=98.4

Q ss_pred             cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----CCeeEE-E---Eec
Q 003842          577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQM-R---FQP  647 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~~~~~v-~---~sp  647 (792)
                      .|.||+..  +..+..+.-..+.|.++.|..+ ..|+ ....||.+++||+.... ...+.     ..+... .   +..
T Consensus        62 ~I~iys~s--G~ll~~i~w~~~~iv~~~wt~~-e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~  136 (410)
T PF04841_consen   62 SIQIYSSS--GKLLSSIPWDSGRIVGMGWTDD-EELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY  136 (410)
T ss_pred             EEEEECCC--CCEeEEEEECCCCEEEEEECCC-CeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence            37777776  3445444433378999999876 4455 55679999999986333 11111     111111 1   122


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCe-EEEEe---cCCCC------CeEE-EEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 003842          648 HLGRYLAAAAENVVSILDAETQA-CRLSL---QGHTK------PIDS-VCWDPSGELLASVSED-SVRVWTVGSGSEGEC  715 (792)
Q Consensus       648 ~~~~lla~s~dg~I~i~D~~t~~-~~~~l---~~h~~------~V~s-v~~spdg~~Las~s~d-~I~IwDl~s~~~~~~  715 (792)
                      ..+ +++...++.|++..-.... ....+   .....      .+.. ..++.+....+....+ .+.+.+-...     
T Consensus       137 ~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~-----  210 (410)
T PF04841_consen  137 KNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF-----  210 (410)
T ss_pred             CCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-----
Confidence            223 4444455555544332221 11111   11000      0000 2233444444444444 5553333211     


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc--ccCCCeEEEEEeCCCC
Q 003842          716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT--AHEGLIAALAVSTETG  777 (792)
Q Consensus       716 i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~--~h~~~V~sl~fspdg~  777 (792)
                       ..+ ...+++..+++||++++|+....+|.+.|++.+-.+.+...  .-......+.|.-+..
T Consensus       211 -~~i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  211 -KQI-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             -ccc-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence             011 12468999999999999999999999999877655554222  2234556677765543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.75  E-value=0.026  Score=65.75  Aligned_cols=145  Identities=12%  Similarity=0.069  Sum_probs=84.9

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEeccCCCC-EEEEEECC---CCCeEEEEe------CCCcEEEEeCCCCCceeEEec
Q 003842          525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSP---SMPRLATSS------FDKTVRVWDADNPGYSLRTFM  594 (792)
Q Consensus       525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~-V~~i~fsp---dg~~Lasgs------~Dg~V~IWdl~s~~~~i~~~~  594 (792)
                      ..|++++.|+.|..+|.++|+.+-........ -..+.-+|   ++ .|+++.      .+|.|+.+|+++ ++.+-.+.
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~T-G~~lW~~~  198 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKT-GKLVWRRY  198 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCC-CceeEecc
Confidence            36777888999999999999988765431100 00111122   34 455543      268899999987 44333222


Q ss_pred             cc-------------------------------CCCeE-EEEEcCCCCeEEEEEe-C----CC-----------cEEEEE
Q 003842          595 GH-------------------------------SASVM-SLDFHPNKDDLICSCD-G----DG-----------EIRYWS  626 (792)
Q Consensus       595 ~h-------------------------------~~~V~-sl~fspd~~~ll~sgs-~----Dg-----------~I~iwd  626 (792)
                      .-                               ...+. .+.+.+..+.++ .+. .    ++           .|.-.|
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy-~~tGnp~p~~~~~r~gdnl~~~s~vAld  277 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIY-FGTGNPSPWNSHLRPGDNLYTSSIVARD  277 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEE-EeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence            11                               01111 235555544333 333 2    12           678889


Q ss_pred             cCCCeeEEEeeCC----------eeE--EEEecCCC---EEEEEEcCCeEEEEECCCCeEE
Q 003842          627 INNGSCTRVFKGG----------TAQ--MRFQPHLG---RYLAAAAENVVSILDAETQACR  672 (792)
Q Consensus       627 l~~~~~~~~~~~~----------~~~--v~~sp~~~---~lla~s~dg~I~i~D~~t~~~~  672 (792)
                      +++|+....|...          ...  +.+..+++   .++.+..+|.++++|.++++.+
T Consensus       278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            9999988766421          111  22324554   4567778999999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.74  E-value=0.0053  Score=67.04  Aligned_cols=240  Identities=13%  Similarity=0.125  Sum_probs=118.7

Q ss_pred             ECCCCceeEEeccCCCCEEE-----EEECCCCCeEEEEe-CCCc--EEEEeCCCCCceeEEecccC-CCeEEEEEcCCCC
Q 003842          540 HTDTLKSKTNLEEHSSLITD-----VRFSPSMPRLATSS-FDKT--VRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKD  610 (792)
Q Consensus       540 dl~t~~~~~~l~~h~~~V~~-----i~fspdg~~Lasgs-~Dg~--V~IWdl~s~~~~i~~~~~h~-~~V~sl~fspd~~  610 (792)
                      |..||..+..|..+......     =+|.+||+.|+.++ .||.  +++.|+.+  ..+..++... .......++++++
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~g~~~~g~~~s~~~~   93 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGPGDNTFGGFLSPDDR   93 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-TTSS
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEccc--CEEEECccCCCCCccceEEecCCC
Confidence            66777777777654433333     35677887665554 4655  55566665  4455555443 2233566778877


Q ss_pred             eEEEEEeCCCcEEEEEcCCCeeEEEeeC--Cee-EEEEe-cCCCEEEEEEc-----------------------CCeEEE
Q 003842          611 DLICSCDGDGEIRYWSINNGSCTRVFKG--GTA-QMRFQ-PHLGRYLAAAA-----------------------ENVVSI  663 (792)
Q Consensus       611 ~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~-~v~~s-p~~~~lla~s~-----------------------dg~I~i  663 (792)
                      .+++.. .+..|+..|+++.+....+..  .-. ...|. ..+...+++..                       ...|..
T Consensus        94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~  172 (386)
T PF14583_consen   94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT  172 (386)
T ss_dssp             EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred             eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence            666544 456899999999876555542  222 23443 22233333332                       124667


Q ss_pred             EECCCCeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCC---e--EEEEECCCCCC-cceEEEeecCCCceEEEEEeCCCC
Q 003842          664 LDAETQACRLSLQGHTKPIDSVCWDPS-GELLASVSED---S--VRVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTYP  736 (792)
Q Consensus       664 ~D~~t~~~~~~l~~h~~~V~sv~~spd-g~~Las~s~d---~--I~IwDl~s~~~-~~~i~~~~~~~~~i~si~fspdg~  736 (792)
                      .|+.+++....+. ...++..+-|+|. ..+|+.|-++   .  -+||-+++... .++++.- .....+..=-|.+||.
T Consensus       173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~  250 (386)
T PF14583_consen  173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGS  250 (386)
T ss_dssp             EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS
T ss_pred             EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCC
Confidence            7888887655554 4567888999994 5577777765   3  37888765322 2222221 1233345557899998


Q ss_pred             EEEEEEc-----CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003842          737 SLLVIGC-----YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD  785 (792)
Q Consensus       737 ~L~sgs~-----dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~D  785 (792)
                      .|+.-+.     +..|.-+|+.+++...+.. ......+..++||+++|-=+.|
T Consensus       251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLME-MPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-TTT--EEEEEE-E-SEEEEEE-TTSSEEEEEE--
T ss_pred             EEEEEeecCCCCceEEEeeCCCCCCceEEEe-CCceeeeEEcCCCCEEEecCCC
Confidence            7776443     2367778888876553322 2234556667899888754444

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.70  E-value=0.005  Score=63.44  Aligned_cols=249  Identities=15%  Similarity=0.135  Sum_probs=140.5

Q ss_pred             EEEEcCCC-CEEEEEeCCCe-EEEEECCCCceeEEeccCCC--CEEEEEECCCCCeEEEEeCC-----CcEEEEeCCCCC
Q 003842          517 CCHFSSDG-KLLATGGHDKK-AVLWHTDTLKSKTNLEEHSS--LITDVRFSPSMPRLATSSFD-----KTVRVWDADNPG  587 (792)
Q Consensus       517 ~lafspdg-~~Lasgs~Dg~-I~vWdl~t~~~~~~l~~h~~--~V~~i~fspdg~~Lasgs~D-----g~V~IWdl~s~~  587 (792)
                      .|+|+|.- .-++.+-.-|+ ..+||........++...++  .--.=.|++||.+|+..-.|     |.|-|||.+..-
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            46666643 34444444444 56788877766555432111  11123799999999877443     789999999766


Q ss_pred             ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEE-EcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003842          588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW-SINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDA  666 (792)
Q Consensus       588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iw-dl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~  666 (792)
                      ..+-.+..|.-.-..+.|.+||..+++.   +|-|... |....+                    +-.-+..-.+.+.|.
T Consensus       152 qrvgE~~t~GiGpHev~lm~DGrtlvva---nGGIethpdfgR~~--------------------lNldsMePSlvlld~  208 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMADGRTLVVA---NGGIETHPDFGRTE--------------------LNLDSMEPSLVLLDA  208 (366)
T ss_pred             ceecccccCCcCcceeEEecCCcEEEEe---CCceecccccCccc--------------------cchhhcCccEEEEec
Confidence            6777888888888899999999866644   4445544 221110                    011122334455565


Q ss_pred             CCCeEEEE--ec--CCCCCeEEEEEcCCCCEEEEEeC-----C-eEEEEECCCCCCcceEEE----eecCCCceEEEEEe
Q 003842          667 ETQACRLS--LQ--GHTKPIDSVCWDPSGELLASVSE-----D-SVRVWTVGSGSEGECVHE----LSCNGNKFHSCVFH  732 (792)
Q Consensus       667 ~t~~~~~~--l~--~h~~~V~sv~~spdg~~Las~s~-----d-~I~IwDl~s~~~~~~i~~----~~~~~~~i~si~fs  732 (792)
                      .++.++.+  +.  .+.-.|..++..+||..++.|-.     | --.|=-...++..+.+..    ...-.+.|-+++.+
T Consensus       209 atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n  288 (366)
T COG3490         209 ATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN  288 (366)
T ss_pred             cccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeec
Confidence            56654432  22  23456888999999987776532     1 111111122222111110    11123457788888


Q ss_pred             CCCCEEEEEEcCC-eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          733 PTYPSLLVIGCYQ-SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       733 pdg~~L~sgs~dg-~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      .+..+++..+-.| ...+||..++.++....-.. +..++-  ...-++..+.+|.|.++
T Consensus       289 ~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d-aaGva~--~~~gf~vssg~G~~~~~  345 (366)
T COG3490         289 RRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD-AAGVAA--AKGGFAVSSGQGRIIFY  345 (366)
T ss_pred             ccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-ccccee--ccCceEEecCCceEEec
Confidence            7777776666654 78899999999875433222 222332  22224444556666643

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.54  E-value=0.0037  Score=74.57  Aligned_cols=141  Identities=11%  Similarity=0.107  Sum_probs=93.6

Q ss_pred             CCCEEEEE-eCCCeEEEEECCCCceeEEeccCCCC-EEEEEECC-----CCCeEEEEeCCCcEEEEeCCCCCceeEEec-
Q 003842          523 DGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSP-----SMPRLATSSFDKTVRVWDADNPGYSLRTFM-  594 (792)
Q Consensus       523 dg~~Lasg-s~Dg~I~vWdl~t~~~~~~l~~h~~~-V~~i~fsp-----dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~-  594 (792)
                      |.++|+.. .....|+-.|++.|+.+..+..|... |.+++-..     +..-.++|-.+..+..||.+-.+..+..-. 
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            33444443 35678999999999999999987754 55554321     133456777788899999986543222111 


Q ss_pred             ---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE---EEeeCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003842          595 ---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDA  666 (792)
Q Consensus       595 ---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~---~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~  666 (792)
                         .......|++-..+|  .||+|+.+|.||+||--..+..   ..+..++..+..+.+|.+++++|. ..|.++|+
T Consensus       572 k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             cccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence               234557788777665  5779999999999994322222   223457888999999888877665 44555543

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.52  E-value=0.01  Score=69.84  Aligned_cols=209  Identities=15%  Similarity=0.154  Sum_probs=112.8

Q ss_pred             CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe------CCC--cEEEEeCCCCCceeEEecccCCCeEEEE
Q 003842          533 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS------FDK--TVRVWDADNPGYSLRTFMGHSASVMSLD  604 (792)
Q Consensus       533 Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs------~Dg--~V~IWdl~s~~~~i~~~~~h~~~V~sl~  604 (792)
                      +|.+.-.+-.....+.-..+....+.+.+++|+|+.++...      .|.  .|.+++..  +.......+  ...+.-.
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g--~~~t~Ps  403 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEG--HSLTRPS  403 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecC--CCCCCce
Confidence            55554443222222222223334678999999999877665      244  34444543  333222222  2378899


Q ss_pred             EcCCCCeEEEEEe-----------CCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEE---EECCCCe
Q 003842          605 FHPNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI---LDAETQA  670 (792)
Q Consensus       605 fspd~~~ll~sgs-----------~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i---~D~~t~~  670 (792)
                      |+|++..+.+...           ..+.+.+.+++.+.....+++.+..+.|+|++.++++.. ++.|++   .....+.
T Consensus       404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~  482 (591)
T PRK13616        404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ  482 (591)
T ss_pred             ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence            9999775554432           223455556655544445567799999999999988876 477777   4444454


Q ss_pred             EEE----EecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003842          671 CRL----SLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY  744 (792)
Q Consensus       671 ~~~----~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d  744 (792)
                      ...    .+.. -...+.++.|..++.+++. ..+ ...+|.+.-.........-......+..++-++.  .|++...+
T Consensus       483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~-~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~  559 (591)
T PRK13616        483 YALTNPREVGPGLGDTAVSLDWRTGDSLVVG-RSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDAR  559 (591)
T ss_pred             eeecccEEeecccCCccccceEecCCEEEEE-ecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCC
Confidence            111    1222 2334688999999986644 444 3334443322111111011111344555655552  46666666


Q ss_pred             CeEEE
Q 003842          745 QSLEL  749 (792)
Q Consensus       745 g~I~I  749 (792)
                      +.+.+
T Consensus       560 g~~~l  564 (591)
T PRK13616        560 AVLQL  564 (591)
T ss_pred             ceEEe
Confidence            54433

>PRK10115 protease 2; Provisional

Probab=97.51  E-value=0.091  Score=63.34  Aligned_cols=198  Identities=10%  Similarity=-0.003  Sum_probs=103.4

Q ss_pred             CCEEEEEECCCCCeEEEEeC-C----CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCC-----CcEEE
Q 003842          555 SLITDVRFSPSMPRLATSSF-D----KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRY  624 (792)
Q Consensus       555 ~~V~~i~fspdg~~Lasgs~-D----g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D-----g~I~i  624 (792)
                      -.+..+.|+||+++|+.+.. +    -.|++.|+.++......+.+- .  ..++|.+|++.++++...+     ..|++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E--PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            44677899999998877633 2    258888998633222222221 1  4699999998888776543     36888


Q ss_pred             EEcCCC--eeEEEeeC--C-ee-EEEEecCCCEEEEEEc---CCeEEEEECC--CCeEEEEecCCCCCeEEEEEcCCCCE
Q 003842          625 WSINNG--SCTRVFKG--G-TA-QMRFQPHLGRYLAAAA---ENVVSILDAE--TQACRLSLQGHTKPIDSVCWDPSGEL  693 (792)
Q Consensus       625 wdl~~~--~~~~~~~~--~-~~-~v~~sp~~~~lla~s~---dg~I~i~D~~--t~~~~~~l~~h~~~V~sv~~spdg~~  693 (792)
                      |++.++  +....+..  . .. .+..+.++.+++..+.   ++.+.+|+..  ++.....+.........+. +..+.+
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l  282 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF  282 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence            899887  33344432  1 22 2223336676665544   4578888853  3332222221122222222 233333


Q ss_pred             EEEEeCC--e--EEEEECCCCCCcceEEEeecC--CCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEE
Q 003842          694 LASVSED--S--VRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMTL  760 (792)
Q Consensus       694 Las~s~d--~--I~IwDl~s~~~~~~i~~~~~~--~~~i~si~fspdg~~L~sgs~dg--~I~IwDl~~~~~~~~  760 (792)
                      ++....+  .  |...++.....   ...+..+  ...+..+.+..+ ..+++...++  .|++++..++....+
T Consensus       283 y~~tn~~~~~~~l~~~~~~~~~~---~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~~~~l  353 (686)
T PRK10115        283 YLRSNRHGKNFGLYRTRVRDEQQ---WEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTREVIGI  353 (686)
T ss_pred             EEEEcCCCCCceEEEecCCCccc---CeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence            3333322  3  44445442111   1222233  236777777722 3344444455  456667655444433

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.0004  Score=78.08  Aligned_cols=95  Identities=13%  Similarity=0.142  Sum_probs=78.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEE-EEEECCCCCeEEEEeCCCcEEEEeCCCCCce
Q 003842          511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT-DVRFSPSMPRLATSSFDKTVRVWDADNPGYS  589 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~-~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~  589 (792)
                      -.-.|.-+.|+|.-.+||++..+|.|.++.+. ...+.++..|...++ +++|.|||+.||+|-.||+|++.|++++...
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            34568889999999999999999999999988 778888887777777 9999999999999999999999999985544


Q ss_pred             eEEecccCCCeEEEEEc
Q 003842          590 LRTFMGHSASVMSLDFH  606 (792)
Q Consensus       590 i~~~~~h~~~V~sl~fs  606 (792)
                      ..........|.++-|.
T Consensus        98 ~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWD  114 (665)
T ss_pred             eccccccccchheeecc
Confidence            43333345567777775

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.44  E-value=0.045  Score=60.41  Aligned_cols=219  Identities=11%  Similarity=0.107  Sum_probs=108.0

Q ss_pred             CCCEEEEEe-CCCeEEEEECCC----CceeEEecc---CC----CCEEEEEECCCCCeEEEEeC------CCcEEEEeCC
Q 003842          523 DGKLLATGG-HDKKAVLWHTDT----LKSKTNLEE---HS----SLITDVRFSPSMPRLATSSF------DKTVRVWDAD  584 (792)
Q Consensus       523 dg~~Lasgs-~Dg~I~vWdl~t----~~~~~~l~~---h~----~~V~~i~fspdg~~Lasgs~------Dg~V~IWdl~  584 (792)
                      +.++|++.+ ..+.|+|+|+.+    .+..++++.   +.    ..-..+..-|+|.+++++-.      -|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777776 678999999973    344555542   11    22334455678888887622      2457777776


Q ss_pred             CCCceeEEeccc---CCCeEEEEEcCCCCeEEEEEeC--------------------CCcEEEEEcCCCeeEEEeeCC--
Q 003842          585 NPGYSLRTFMGH---SASVMSLDFHPNKDDLICSCDG--------------------DGEIRYWSINNGSCTRVFKGG--  639 (792)
Q Consensus       585 s~~~~i~~~~~h---~~~V~sl~fspd~~~ll~sgs~--------------------Dg~I~iwdl~~~~~~~~~~~~--  639 (792)
                      + ......+...   ...-+++-|.|..+. ++|...                    ..++.+||+.+.+.+.++.-+  
T Consensus       166 t-f~v~g~We~~~~~~~~gYDfw~qpr~nv-MiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~  243 (461)
T PF05694_consen  166 T-FEVKGRWEKDRGPQPFGYDFWYQPRHNV-MISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE  243 (461)
T ss_dssp             T---EEEE--SB-TT------EEEETTTTE-EEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred             c-ccccceeccCCCCCCCCCCeEEcCCCCE-EEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence            5 3444444432   234567778887554 445432                    357999999999999988754  


Q ss_pred             ---eeEEEEe--cCCCEEEEEEc-CCeEEEE-ECCCC----eEEEEecCC-----------------CCCeEEEEEcCCC
Q 003842          640 ---TAQMRFQ--PHLGRYLAAAA-ENVVSIL-DAETQ----ACRLSLQGH-----------------TKPIDSVCWDPSG  691 (792)
Q Consensus       640 ---~~~v~~s--p~~~~lla~s~-dg~I~i~-D~~t~----~~~~~l~~h-----------------~~~V~sv~~spdg  691 (792)
                         ...++|.  |+..+-++++. ...|..| ..+.+    +.+..+...                 ..-|+.|.+|.|.
T Consensus       244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD  323 (461)
T PF05694_consen  244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD  323 (461)
T ss_dssp             EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred             CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence               2345654  44555555544 4444444 43443    223333211                 2347899999999


Q ss_pred             CEEEEEeCC--eEEEEECCCCCCcceEEEeecCC----------------CceEEEEEeCCCCEEEEEEc
Q 003842          692 ELLASVSED--SVRVWTVGSGSEGECVHELSCNG----------------NKFHSCVFHPTYPSLLVIGC  743 (792)
Q Consensus       692 ~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~----------------~~i~si~fspdg~~L~sgs~  743 (792)
                      ++|..++.-  .|+-||+......+.+..+...+                +....+.+|-||+.|++..+
T Consensus       324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            999988765  89999999877767665544221                12366788999999888764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.43  E-value=0.058  Score=59.18  Aligned_cols=66  Identities=9%  Similarity=0.016  Sum_probs=41.4

Q ss_pred             CceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCcEE----EE-cccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003842          724 NKFHSCVFHP-------TYPSLLVIGCYQSLELWNMSENKTM----TL-TAHEGLIAALAVSTETGYVASASHDKFVK  789 (792)
Q Consensus       724 ~~i~si~fsp-------dg~~L~sgs~dg~I~IwDl~~~~~~----~~-~~h~~~V~sl~fspdg~~LaSgs~DG~I~  789 (792)
                      ..+..+.|..       .+.+|++.-..+.|...++++...+    .+ ......+..|++.|||.++++-+.+|.|+
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            4455666653       3344555444568888888755333    22 23445899999999999988888888875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.40  E-value=0.033  Score=62.95  Aligned_cols=118  Identities=9%  Similarity=0.055  Sum_probs=83.3

Q ss_pred             CCeEEEEEcCCC----CEEEEEeCCCeEEEEECC-----CCceeEEecc-C--CCC--EEEEEECCCCCeEEEEeCCCcE
Q 003842          513 SKVICCHFSSDG----KLLATGGHDKKAVLWHTD-----TLKSKTNLEE-H--SSL--ITDVRFSPSMPRLATSSFDKTV  578 (792)
Q Consensus       513 ~~V~~lafspdg----~~Lasgs~Dg~I~vWdl~-----t~~~~~~l~~-h--~~~--V~~i~fspdg~~Lasgs~Dg~V  578 (792)
                      ..|..++|.|-+    ..|++.-..+.|.||-+.     ..+.+..-.. .  .-+  -..+.|+|....|++-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            458999999843    245556678899999874     2222222111 1  111  2357899999888887777766


Q ss_pred             EEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 003842          579 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG  630 (792)
Q Consensus       579 ~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~  630 (792)
                      .++++..+...++.-....+.|.|.||..||.+++++.+..=.-++||-...
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            7788876666665555677899999999999999988887777889986543

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.40  E-value=0.022  Score=66.96  Aligned_cols=185  Identities=11%  Similarity=0.063  Sum_probs=106.2

Q ss_pred             CCCeEEEEEcCCCCeEEEEEe-----CC--CcEEEEEcCCCeeEEEee-CCeeEEEEecCCCEEEEEEcC----------
Q 003842          597 SASVMSLDFHPNKDDLICSCD-----GD--GEIRYWSINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAAE----------  658 (792)
Q Consensus       597 ~~~V~sl~fspd~~~ll~sgs-----~D--g~I~iwdl~~~~~~~~~~-~~~~~v~~sp~~~~lla~s~d----------  658 (792)
                      ...+.+.+++|++..++++..     .|  ..|.+++.... ...... .....-.|+|+++.+++....          
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-AVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-ceeeecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            346789999999998877762     23  35666665322 222222 235668899998877766533          


Q ss_pred             --CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEE---EECCCCCCcce--EEEeec-CCCceEEEE
Q 003842          659 --NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV---WTVGSGSEGEC--VHELSC-NGNKFHSCV  730 (792)
Q Consensus       659 --g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~I---wDl~s~~~~~~--i~~~~~-~~~~i~si~  730 (792)
                        +.+.+.+++.+....   .....|..+.|+|||..|+....+.|++   -....+. ...  ...+.. ....+..+.
T Consensus       428 ~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~  503 (591)
T PRK13616        428 ATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLD  503 (591)
T ss_pred             CCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecccCCccccce
Confidence              233333444333222   2345799999999999998877666666   3323331 111  112222 233367899


Q ss_pred             EeCCCCEEEEEEcCCe--EEEEECCCCcEEEEcc--cCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003842          731 FHPTYPSLLVIGCYQS--LELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASASHDKFVK  789 (792)
Q Consensus       731 fspdg~~L~sgs~dg~--I~IwDl~~~~~~~~~~--h~~~V~sl~fspdg~~LaSgs~DG~I~  789 (792)
                      |..++.. +++..++.  |+..++.......+..  ....+.+|+-+++  .|+....+|.+.
T Consensus       504 W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        504 WRTGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             EecCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            9999984 45555543  4444555433222222  3556777776653  344555666443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.40  E-value=0.14  Score=53.45  Aligned_cols=193  Identities=12%  Similarity=0.091  Sum_probs=119.1

Q ss_pred             eeEEeccC-CCCEEEEEECCCCCeEEEEeCCC--cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003842          546 SKTNLEEH-SSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI  622 (792)
Q Consensus       546 ~~~~l~~h-~~~V~~i~fspdg~~Lasgs~Dg--~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I  622 (792)
                      .+.++... ....-.+.|..++.++-+.+.-|  .|+.+|+.++.............-..|++..  +.++.-.-.++..
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~  112 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTG  112 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEE
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeE
Confidence            34444422 23345677877787777777666  6899999984332233223333445566663  4566667789999


Q ss_pred             EEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC-----CCCeEEEEEcCCCCEEEEE
Q 003842          623 RYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH-----TKPIDSVCWDPSGELLASV  697 (792)
Q Consensus       623 ~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h-----~~~V~sv~~spdg~~Las~  697 (792)
                      .+||.++.+.+..+.-....--...++..++.......|+++|.++.+....+...     -..++-+.|. +|.+.|-.
T Consensus       113 f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANV  191 (264)
T PF05096_consen  113 FVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANV  191 (264)
T ss_dssp             EEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEE
T ss_pred             EEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEe
Confidence            99999999988877543332223367788999888999999999988776665432     1245667775 56666655


Q ss_pred             eCC-eEEEEECCCCCCcceEEEeec---------------CCCceEEEEEeCCCCEEEEEEcC
Q 003842          698 SED-SVRVWTVGSGSEGECVHELSC---------------NGNKFHSCVFHPTYPSLLVIGCY  744 (792)
Q Consensus       698 s~d-~I~IwDl~s~~~~~~i~~~~~---------------~~~~i~si~fspdg~~L~sgs~d  744 (792)
                      -.. .|...|..+|   ..+..+..               ...-.+.|+|.|....|++.+..
T Consensus       192 W~td~I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  192 WQTDRIVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             TTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             CCCCeEEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            544 8888898887   33333211               13458999999988877777654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.39  E-value=0.078  Score=63.12  Aligned_cols=270  Identities=15%  Similarity=0.131  Sum_probs=153.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCceeEEe--ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc
Q 003842          513 SKVICCHFSSDGKLLATGGHDKKAVLWHT--DTLKSKTNL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY  588 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl--~t~~~~~~l--~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~  588 (792)
                      ..|.-.+|-.|..+|.++..||.+.-|.+  .++..-..-  .-...++.--.|+..++.-+.+..|.-..+|.-+. +.
T Consensus       584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kL  662 (1096)
T KOG1897|consen  584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KL  662 (1096)
T ss_pred             hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cE
Confidence            45666677777889999999999876654  444332222  22345666667777777666667777777777653 22


Q ss_pred             eeEEecccCCCeEEE-EEcC-CCCeEEEEEeCCCcEEEEEcCCCeeE--EEe--eCCeeEEEEecCCCEEEEEEc-----
Q 003842          589 SLRTFMGHSASVMSL-DFHP-NKDDLICSCDGDGEIRYWSINNGSCT--RVF--KGGTAQMRFQPHLGRYLAAAA-----  657 (792)
Q Consensus       589 ~i~~~~~h~~~V~sl-~fsp-d~~~ll~sgs~Dg~I~iwdl~~~~~~--~~~--~~~~~~v~~sp~~~~lla~s~-----  657 (792)
                      ....+. . ..+..+ .|+. .....++++. .+.+++.-++.-..+  +++  ......+++.+..-.+.+.+.     
T Consensus       663 v~spls-~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~  739 (1096)
T KOG1897|consen  663 VYSPLS-L-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESS  739 (1096)
T ss_pred             EEeccc-h-HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccc
Confidence            221111 1 111111 1221 1222343443 566777766543222  222  234445666653333333222     


Q ss_pred             ------C---CeEEEEECCCCeEEEEecCC-C---CCeEEEEEcCC-CCEEEEEeC-----------CeEEEEECCCCCC
Q 003842          658 ------E---NVVSILDAETQACRLSLQGH-T---KPIDSVCWDPS-GELLASVSE-----------DSVRVWTVGSGSE  712 (792)
Q Consensus       658 ------d---g~I~i~D~~t~~~~~~l~~h-~---~~V~sv~~spd-g~~Las~s~-----------d~I~IwDl~s~~~  712 (792)
                            .   ..++++|-.+.+.+...+-. .   ..|.++.|..| +.++++|+.           +.|.||.+.....
T Consensus       740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~  819 (1096)
T KOG1897|consen  740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS  819 (1096)
T ss_pred             hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence                  1   24677787777665443321 1   23445558777 667777752           2577777766444


Q ss_pred             cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003842          713 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL  790 (792)
Q Consensus       713 ~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I  790 (792)
                      .+.+.+....+..+.-+.|  +|++||..  ...|++|++.+.+.+ ....|..++..+...-.+..|+.|..=++|.+
T Consensus       820 L~~v~e~~v~Gav~aL~~f--ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl  894 (1096)
T KOG1897|consen  820 LELVAETVVKGAVYALVEF--NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL  894 (1096)
T ss_pred             eeeeeeeeeccceeehhhh--CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence            4555544433333322233  45555544  458999999998666 45578888999999889999998876666554

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.37  E-value=0.057  Score=60.35  Aligned_cols=88  Identities=20%  Similarity=0.325  Sum_probs=57.8

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEE---EECC-CC----ceeEEecc---CC--CCEEEEEECC-----------CCCeEEEE
Q 003842          517 CCHFSSDGKLLATGGHDKKAVL---WHTD-TL----KSKTNLEE---HS--SLITDVRFSP-----------SMPRLATS  572 (792)
Q Consensus       517 ~lafspdg~~Lasgs~Dg~I~v---Wdl~-t~----~~~~~l~~---h~--~~V~~i~fsp-----------dg~~Lasg  572 (792)
                      +++.+|++++||.+..+..|.+   |+.+ .+    .......+   +.  ..|+++.|-|           |...|++|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            5688999999999987777665   6442 11    12222111   21  5788777644           45689999


Q ss_pred             eCCCcEEEEeCCCCCceeEEecccCCCeEEEEEc
Q 003842          573 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH  606 (792)
Q Consensus       573 s~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fs  606 (792)
                      ..+|.|++|...  +..+..-.-|..+|..|.+.
T Consensus        86 ~ssG~vrfyte~--G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   86 TSSGYVRFYTEN--GVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             ecccEEEEEecc--chHHHHHhcCccceEEEEec
Confidence            999999999985  34444444467777777664

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.37  E-value=0.3  Score=54.76  Aligned_cols=259  Identities=15%  Similarity=0.164  Sum_probs=144.2

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcee--EE-e-ccCCCCEEEEEECC----CC-CeEEEEeCCCcEEEEeCCCCC-------
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSK--TN-L-EEHSSLITDVRFSP----SM-PRLATSSFDKTVRVWDADNPG-------  587 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~--~~-l-~~h~~~V~~i~fsp----dg-~~Lasgs~Dg~V~IWdl~s~~-------  587 (792)
                      ...|++|+.+|.++||+.......  .. + ..-..+|..|.+-.    .. ..||+ =.-..+.||.+....       
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence            358999999999999998543311  11 1 12346777776543    12 23444 455668888874211       


Q ss_pred             -ceeEEecccC--CCeEEEEEcC----CCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEcC
Q 003842          588 -YSLRTFMGHS--ASVMSLDFHP----NKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       588 -~~i~~~~~h~--~~V~sl~fsp----d~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~d  658 (792)
                       ..+.....|.  .....+++-|    .+..+|++=+.||.+.+|+-+.....+.+..  -...+.|.+..+.+++++.+
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss  195 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS  195 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence             1233333343  2333444433    2357888999999999999876655555443  23558899999999999999


Q ss_pred             CeEEEEECCCC--------------------e---EEEEecCCCCCeE---EEEEcCCCCEEEEEeCCeEEEEECCCCCC
Q 003842          659 NVVSILDAETQ--------------------A---CRLSLQGHTKPID---SVCWDPSGELLASVSEDSVRVWTVGSGSE  712 (792)
Q Consensus       659 g~I~i~D~~t~--------------------~---~~~~l~~h~~~V~---sv~~spdg~~Las~s~d~I~IwDl~s~~~  712 (792)
                      ..|..|....-                    +   +-+++.- ...+.   .+.++.....|++-++..+.+.+-. | .
T Consensus       196 ~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G-~  272 (418)
T PF14727_consen  196 WTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G-S  272 (418)
T ss_pred             eeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-e
Confidence            88888864211                    0   1111111 12222   3333334445666666666666653 2 2


Q ss_pred             cceEEEeecCCCceEEEEEeC----CC---CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEE---EeCCCCEEEEE
Q 003842          713 GECVHELSCNGNKFHSCVFHP----TY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALA---VSTETGYVASA  782 (792)
Q Consensus       713 ~~~i~~~~~~~~~i~si~fsp----dg---~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~---fspdg~~LaSg  782 (792)
                      .+..+.+...  +...+.|.-    ++   ..+++++.++.+.||.-.+...-.-. ...+| ++.   |..-..+|++-
T Consensus       273 l~~~krLd~~--p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l-~~~PV-al~v~~~~~~~G~IV~L  348 (418)
T PF14727_consen  273 LRFQKRLDYN--PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL-PHVPV-ALSVANFNGLKGLIVSL  348 (418)
T ss_pred             EEEEEecCCc--eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC-CCCCE-EEEecccCCCCceEEEE
Confidence            3333444322  222222221    22   25889999999999974432222111 11222 333   23334578888


Q ss_pred             eCCCcEEE
Q 003842          783 SHDKFVKL  790 (792)
Q Consensus       783 s~DG~I~I  790 (792)
                      ++||.|.+
T Consensus       349 s~~G~L~v  356 (418)
T PF14727_consen  349 SDEGQLSV  356 (418)
T ss_pred             cCCCcEEE
Confidence            88998865

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.36  E-value=0.04  Score=55.40  Aligned_cols=204  Identities=11%  Similarity=0.108  Sum_probs=108.6

Q ss_pred             eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEc-CCCC-eEEEEEeCCCcEEEEEcC--CCeeEEEe-------
Q 003842          568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH-PNKD-DLICSCDGDGEIRYWSIN--NGSCTRVF-------  636 (792)
Q Consensus       568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fs-pd~~-~ll~sgs~Dg~I~iwdl~--~~~~~~~~-------  636 (792)
                      ++++-=..|.|.-||+........++.+..  +.++.+- .++. .+.+.++..-.|.-||..  .....+++       
T Consensus        29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~  106 (310)
T KOG4499|consen   29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR  106 (310)
T ss_pred             EEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence            444444556677788876332222333221  2233332 1222 344455545555667733  22333331       


Q ss_pred             -eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC--------CCeEEEEEcCCCCEEEEE-eCC-eEEEE
Q 003842          637 -KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT--------KPIDSVCWDPSGELLASV-SED-SVRVW  705 (792)
Q Consensus       637 -~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~--------~~V~sv~~spdg~~Las~-s~d-~I~Iw  705 (792)
                       +...+.-..+|++++ +.|.....-.++....+.+...+.+|.        .--+.++|+.+.+.+... +.+ +|.-|
T Consensus       107 kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  107 KKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             HhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence             123344567788777 444432111122222333333333332        223568898887766554 445 78778


Q ss_pred             E--CCCCC--CcceEEEeec----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeC
Q 003842          706 T--VGSGS--EGECVHELSC----NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVST  774 (792)
Q Consensus       706 D--l~s~~--~~~~i~~~~~----~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fsp  774 (792)
                      |  ..++.  ..+.+..+..    ..-....+++..+|...+++-..++|..+|..+++.+ .+.-....|++++|--
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            8  44542  2233333332    1112334555668887777778889999999999988 5555678899999953

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.35  E-value=0.17  Score=52.79  Aligned_cols=192  Identities=14%  Similarity=0.128  Sum_probs=116.4

Q ss_pred             ceeeeeeeecCCCC-eEEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeEEeccCC-CCEEEEEECCCCCeEEEEeCCC
Q 003842          501 SFKEANSVRASTSK-VICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDK  576 (792)
Q Consensus       501 ~~~~~~~l~~H~~~-V~~lafspdg~~Lasgs~Dg--~I~vWdl~t~~~~~~l~~h~-~~V~~i~fspdg~~Lasgs~Dg  576 (792)
                      .++.+.++...... .-.+.|..+|.++-+.+.-|  .|+.+|+++++......-.. ..-..|+.. +++.+...=.++
T Consensus        32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~  110 (264)
T PF05096_consen   32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEG  110 (264)
T ss_dssp             EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSS
T ss_pred             eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCC
Confidence            34445554433333 34677878888888887766  69999999998776554221 112223333 233344444578


Q ss_pred             cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--------CeeEEEEecC
Q 003842          577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPH  648 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------~~~~v~~sp~  648 (792)
                      ...+||.++ -+.+..+. ..+.=+.|+  .++..++ ..+....|+++|..+.+..+.+.-        ..+.+.|.  
T Consensus       111 ~~f~yd~~t-l~~~~~~~-y~~EGWGLt--~dg~~Li-~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--  183 (264)
T PF05096_consen  111 TGFVYDPNT-LKKIGTFP-YPGEGWGLT--SDGKRLI-MSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--  183 (264)
T ss_dssp             EEEEEETTT-TEEEEEEE--SSS--EEE--ECSSCEE-EE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--
T ss_pred             eEEEEcccc-ceEEEEEe-cCCcceEEE--cCCCEEE-EECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--
Confidence            899999987 55666664 345667777  4456666 455577899999988877665532        23345554  


Q ss_pred             CCEEEEEEc-CCeEEEEECCCCeEEEEecC------------C---CCCeEEEEEcCCCCEEEEEeCC
Q 003842          649 LGRYLAAAA-ENVVSILDAETQACRLSLQG------------H---TKPIDSVCWDPSGELLASVSED  700 (792)
Q Consensus       649 ~~~lla~s~-dg~I~i~D~~t~~~~~~l~~------------h---~~~V~sv~~spdg~~Las~s~d  700 (792)
                      ++.+++--. ...|...|..+++++..+..            +   ..-.+.|+|+|....|...+..
T Consensus       184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            355555444 77899999999998876531            1   2457899999988877766665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.0041  Score=68.84  Aligned_cols=133  Identities=14%  Similarity=0.129  Sum_probs=92.6

Q ss_pred             CEEEE-EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC--------EEEEEeCCeEEEEECCCCCCcceEEEee
Q 003842          650 GRYLA-AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE--------LLASVSEDSVRVWTVGSGSEGECVHELS  720 (792)
Q Consensus       650 ~~lla-~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~--------~Las~s~d~I~IwDl~s~~~~~~i~~~~  720 (792)
                      +.++. +.....|+-.|++.|+.+..+.-+.. |.-+.+.|+.+        .|+..+...|.-||.+-.... .+....
T Consensus       346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q  423 (644)
T KOG2395|consen  346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQ  423 (644)
T ss_pred             ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeee
Confidence            44433 33457889999999999999987766 77788888654        344445558999998753321 222222


Q ss_pred             cC----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003842          721 CN----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD  785 (792)
Q Consensus       721 ~~----~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~D  785 (792)
                      .+    ...+.|++-..+| +|++|+.+|.|++||--..... .+.+-..+|..|..+.||++|++.+..
T Consensus       424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t  492 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT  492 (644)
T ss_pred             ccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence            22    3345566655555 7999999999999997333222 677888999999999999988766543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.33  E-value=0.28  Score=58.59  Aligned_cols=214  Identities=12%  Similarity=0.095  Sum_probs=126.5

Q ss_pred             eEEEEeCCCcEEEEeCCCCC-ceeEEecccCCCeEEEEEcCCCCeEEEEEeCC--------------CcEEEEEcCCCee
Q 003842          568 RLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--------------GEIRYWSINNGSC  632 (792)
Q Consensus       568 ~Lasgs~Dg~V~IWdl~s~~-~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D--------------g~I~iwdl~~~~~  632 (792)
                      .|+++. .+.+++..++.-. ..++++ .-......|++.+..- ++.+.+.-              ..++++|-++.+.
T Consensus       686 ~l~~~~-~~~l~i~tid~iqkl~irtv-pl~~~prrI~~q~~sl-~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v  762 (1096)
T KOG1897|consen  686 SLASAN-GGALTIGTIDEIQKLHIRTV-PLGESPRRICYQESSL-TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV  762 (1096)
T ss_pred             eEEEec-CCceEEEEecchhhcceeee-cCCCChhheEecccce-EEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence            455544 3447777766422 223442 2344566777776322 33232221              2467788777776


Q ss_pred             EEEeeC-------CeeEEEEecC-CCEEEEEEc----------CCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCC
Q 003842          633 TRVFKG-------GTAQMRFQPH-LGRYLAAAA----------ENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGE  692 (792)
Q Consensus       633 ~~~~~~-------~~~~v~~sp~-~~~lla~s~----------dg~I~i~D~~t~~~~~~l~~--h~~~V~sv~~spdg~  692 (792)
                      +..++-       .+.++.|..+ +.++++|+.          .|.|.||.......+.....  -.+.+.+++. -+|+
T Consensus       763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngk  841 (1096)
T KOG1897|consen  763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGK  841 (1096)
T ss_pred             EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCe
Confidence            655432       1233446666 456666654          47888888776433332222  2234444443 3566


Q ss_pred             EEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcEE--EEcccCCCeE
Q 003842          693 LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTM--TLTAHEGLIA  768 (792)
Q Consensus       693 ~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~--~~~~h~~~V~  768 (792)
                      +||+-+ -.|++|++.+.   +.++.-..+...+..+...-.++.|++|..-+.|.+.  +..++...  .-..+..+++
T Consensus       842 llA~In-~~vrLye~t~~---~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmt  917 (1096)
T KOG1897|consen  842 LLAGIN-QSVRLYEWTTE---RELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMT  917 (1096)
T ss_pred             EEEecC-cEEEEEEcccc---ceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCcccee
Confidence            665432 27888888765   4455555567788888999999999999988866655  44454455  3345778889


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEE
Q 003842          769 ALAVSTETGYVASASHDKFVKL  790 (792)
Q Consensus       769 sl~fspdg~~LaSgs~DG~I~I  790 (792)
                      ++.+-.+..|+ .+..+|.+++
T Consensus       918 aveil~~d~yl-gae~~gNlf~  938 (1096)
T KOG1897|consen  918 AVEILDDDTYL-GAENSGNLFT  938 (1096)
T ss_pred             eEEEecCceEE-eecccccEEE
Confidence            99887665554 4556777665

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.28  E-value=0.027  Score=60.73  Aligned_cols=186  Identities=17%  Similarity=0.188  Sum_probs=112.8

Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC---
Q 003842          602 SLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG---  677 (792)
Q Consensus       602 sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~---  677 (792)
                      +..|.++...++++--..+.|.-|+..+++. ..........+.....++.|+++...  +.+++.+++..+..+..   
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEHG--VRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEccc--cEEEeccCCceeEEeccccC
Confidence            4457788777777777788999999986643 33444455555555555555554433  34455455444222211   


Q ss_pred             --CCCCeEEEEEcCCCCEEEEEeC---------C-eEEEEECC-CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003842          678 --HTKPIDSVCWDPSGELLASVSE---------D-SVRVWTVG-SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY  744 (792)
Q Consensus       678 --h~~~V~sv~~spdg~~Las~s~---------d-~I~IwDl~-s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d  744 (792)
                        .....+.+...|+|.+.++...         . .-.||-+. .+   ..++.+..+-..-+.++|+||++.++++.+.
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g---~~~~l~~~~~~~~NGla~SpDg~tly~aDT~  183 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG---GVVRLLDDDLTIPNGLAFSPDGKTLYVADTP  183 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC---CEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence              1234567888899998776544         1 23455554 22   3334444434456789999999988888776


Q ss_pred             -CeEEEEECCC--C----c--EEEEcccCCCeEEEEEeCCCCEEEEEeCCC-cEEEeC
Q 003842          745 -QSLELWNMSE--N----K--TMTLTAHEGLIAALAVSTETGYVASASHDK-FVKLWK  792 (792)
Q Consensus       745 -g~I~IwDl~~--~----~--~~~~~~h~~~V~sl~fspdg~~LaSgs~DG-~I~IWd  792 (792)
                       +.|+-|++..  +    +  .+......+..-.++...+|.+.+++..+| .|.+|+
T Consensus       184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~  241 (307)
T COG3386         184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN  241 (307)
T ss_pred             CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence             6888887762  1    1  112223456667788888888776555554 777764

>PHA02713 hypothetical protein; Provisional

Probab=97.23  E-value=0.021  Score=67.23  Aligned_cols=213  Identities=8%  Similarity=0.069  Sum_probs=106.9

Q ss_pred             eEEEEECCCCceeE--EeccCCCCEEEEEECCCCCeEEEEeCC------CcEEEEeCCCCCceeEEecc---cCCCeEEE
Q 003842          535 KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPGYSLRTFMG---HSASVMSL  603 (792)
Q Consensus       535 ~I~vWdl~t~~~~~--~l~~h~~~V~~i~fspdg~~Lasgs~D------g~V~IWdl~s~~~~i~~~~~---h~~~V~sl  603 (792)
                      .+..||..+.+...  .+...... .+++. -++.++++|+.+      ..|..||..+...  ..+..   ..... ++
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~~~~~m~~~R~~~-~~  347 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH--VELPPMIKNRCRF-SL  347 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE--eeCCCCcchhhce-eE
Confidence            56778877654322  22211111 12222 256677777754      3477888876322  11111   11111 22


Q ss_pred             EEcCCCCeEEEEEeCCC-----cEEEEEcCCCeeEEE--eeCCeeEE-EEecCCCEEEEEEcC-----------------
Q 003842          604 DFHPNKDDLICSCDGDG-----EIRYWSINNGSCTRV--FKGGTAQM-RFQPHLGRYLAAAAE-----------------  658 (792)
Q Consensus       604 ~fspd~~~ll~sgs~Dg-----~I~iwdl~~~~~~~~--~~~~~~~v-~~sp~~~~lla~s~d-----------------  658 (792)
                      +..  ++.+++.||.++     .+.+||..+.+....  +....... ...-++..+++|+.+                 
T Consensus       348 ~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~  425 (557)
T PHA02713        348 AVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDME  425 (557)
T ss_pred             EEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccc
Confidence            222  345777787654     478899887754432  11111111 122244444555543                 


Q ss_pred             ------CeEEEEECCCCeEE--EEecCCCCCeEEEEEcCCCCEEEEEeCC-------eEEEEECCCCCCcceEEEeecCC
Q 003842          659 ------NVVSILDAETQACR--LSLQGHTKPIDSVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNG  723 (792)
Q Consensus       659 ------g~I~i~D~~t~~~~--~~l~~h~~~V~sv~~spdg~~Las~s~d-------~I~IwDl~s~~~~~~i~~~~~~~  723 (792)
                            ..+..||.++.+-.  ..+...... .+++ .-++++.+.|+.+       .+..||..+.+.+..+..+....
T Consensus       426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r  503 (557)
T PHA02713        426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL  503 (557)
T ss_pred             ccccccceEEEECCCCCeEeecCCCCccccc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence                  24778888776432  222111111 1222 2346666666532       36778887622344444443333


Q ss_pred             CceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEE
Q 003842          724 NKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTM  758 (792)
Q Consensus       724 ~~i~si~fspdg~~L~sgs~dg--~I~IwDl~~~~~~  758 (792)
                      .....++  -+++..++|+.++  .+..||..+.+..
T Consensus       504 ~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        504 SALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             ccceeEE--ECCEEEEEeeecceeehhhcCccccccc
Confidence            2222223  3777888888887  7888998887765

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.19  E-value=0.02  Score=67.34  Aligned_cols=229  Identities=15%  Similarity=0.128  Sum_probs=118.0

Q ss_pred             CCCCEEEEEeCC------CeEEEEECCCCceeEEecc-CCCCEEEEEECCCCCeEEEEeCC-C-----cEEEEeCCCCCc
Q 003842          522 SDGKLLATGGHD------KKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFD-K-----TVRVWDADNPGY  588 (792)
Q Consensus       522 pdg~~Lasgs~D------g~I~vWdl~t~~~~~~l~~-h~~~V~~i~fspdg~~Lasgs~D-g-----~V~IWdl~s~~~  588 (792)
                      ..+.++++||.+      ..|..||..+........- ....-.++++. ++.++++|+.| |     ++..||...+..
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence            345567777766      3577888877643332221 22223334443 45788899988 3     577888876432


Q ss_pred             eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc-----EEEEEcCCCeeEEEe--eCCeeEEEEec-CCCEEEEEEcC--
Q 003842          589 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-----IRYWSINNGSCTRVF--KGGTAQMRFQP-HLGRYLAAAAE--  658 (792)
Q Consensus       589 ~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~-----I~iwdl~~~~~~~~~--~~~~~~v~~sp-~~~~lla~s~d--  658 (792)
                        ..+..-...-..+....-++.+.++|+.||.     |..||..+.+....-  ........... ++..+++|+.+  
T Consensus       362 --~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  362 --TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS  439 (571)
T ss_pred             --eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence              1111111111112222224567888988864     777888776543322  22222333333 33444555543  


Q ss_pred             ----CeEEEEECCCCeEEE--EecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeecCCCce
Q 003842          659 ----NVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKF  726 (792)
Q Consensus       659 ----g~I~i~D~~t~~~~~--~l~~h~~~V~sv~~spdg~~Las~s~d------~I~IwDl~s~~~~~~i~~~~~~~~~i  726 (792)
                          ..+..||..+.+-..  .+..-.... .++. -++.+.+.|+.+      +|..||..+. .+..+..+......+
T Consensus       440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~-~W~~v~~m~~~rs~~  516 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETN-QWTMVAPMTSPRSAV  516 (571)
T ss_pred             ccccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCC-ceeEcccCccccccc
Confidence                367889988765432  222111122 2332 345666666644      4778888764 222222222222222


Q ss_pred             EEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEE
Q 003842          727 HSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTM  758 (792)
Q Consensus       727 ~si~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~  758 (792)
                      .  +..-++...++|+.||     +|..||..+++..
T Consensus       517 g--~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~  551 (571)
T KOG4441|consen  517 G--VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT  551 (571)
T ss_pred             c--EEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence            1  2223566677777775     6888888777655

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.19  E-value=0.038  Score=55.56  Aligned_cols=161  Identities=15%  Similarity=0.173  Sum_probs=102.1

Q ss_pred             EEEEEeCCCeEEEEEC--CCCceeEEecc-----CCCCEEEEEECCCCCeEEEEeC---------CCcEEEEeCCCCCce
Q 003842          526 LLATGGHDKKAVLWHT--DTLKSKTNLEE-----HSSLITDVRFSPSMPRLATSSF---------DKTVRVWDADNPGYS  589 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl--~t~~~~~~l~~-----h~~~V~~i~fspdg~~Lasgs~---------Dg~V~IWdl~s~~~~  589 (792)
                      +.+.++..-.|.-||.  +..+...++..     .....++-..+|+|++++-.-.         .|.++.|-...   .
T Consensus        73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h---~  149 (310)
T KOG4499|consen   73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH---Q  149 (310)
T ss_pred             EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC---C
Confidence            3444444444555773  23333333221     2445666678899988543322         24566665543   2


Q ss_pred             eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEE--cCCCee-----EEEeeC-------CeeEEEEecCCCEEEEE
Q 003842          590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS--INNGSC-----TRVFKG-------GTAQMRFQPHLGRYLAA  655 (792)
Q Consensus       590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwd--l~~~~~-----~~~~~~-------~~~~v~~sp~~~~lla~  655 (792)
                      +..+...-.--+.|+|..+.+.+.++-+.+-+|.-||  ..+|..     +..++.       ....+++...++.++++
T Consensus       150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~  229 (310)
T KOG4499|consen  150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT  229 (310)
T ss_pred             ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE
Confidence            2233333344567899988888888888889998888  445432     222221       11225556677778888


Q ss_pred             EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcC
Q 003842          656 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDP  689 (792)
Q Consensus       656 s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp  689 (792)
                      -..++|..+|..+++.+.+++-....|+|+||--
T Consensus       230 ~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  230 FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             ecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            8889999999999999999998889999999964

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.18  E-value=0.086  Score=55.10  Aligned_cols=191  Identities=12%  Similarity=0.123  Sum_probs=121.4

Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      +.+-+..|.++.|+|+.+.|++......-.||=...|..+.++.- .-.....|.|.-++.++++--.++.+.++.++..
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            455666699999999999999999888888888888999888762 1233456788888878888788888988888754


Q ss_pred             CceeE---------EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eE------------EEeeCCeeEEE
Q 003842          587 GYSLR---------TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CT------------RVFKGGTAQMR  644 (792)
Q Consensus       587 ~~~i~---------~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~~------------~~~~~~~~~v~  644 (792)
                      ...+.         ...........++|.|.+..++ .+-+..-+.||.+.... .+            ..+-..+..+.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            32221         1112255678999999987776 45555666666655332 11            11223455677


Q ss_pred             EecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCC---------CCeEEEEEcCCCCEEEEEeCC
Q 003842          645 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSED  700 (792)
Q Consensus       645 ~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~sv~~spdg~~Las~s~d  700 (792)
                      |.+..+.+++-+. ++.|...|.... ++..+.-+.         ..-..|+.+++|.+.+++-.+
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn  304 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN  304 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence            8877777666555 556666665543 233222111         113356666666655444333

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.14  E-value=0.013  Score=65.13  Aligned_cols=138  Identities=10%  Similarity=0.068  Sum_probs=96.9

Q ss_pred             EEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeE------EEEEeCCCcEEEEEcCCCee--EEE-----
Q 003842          569 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDL------ICSCDGDGEIRYWSINNGSC--TRV-----  635 (792)
Q Consensus       569 Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~l------l~sgs~Dg~I~iwdl~~~~~--~~~-----  635 (792)
                      |.++.....++-.|++. ++.+..+.-+.. |.-+.+.|+.+.-      -+.|-.|..|+-||.+-...  +..     
T Consensus       349 l~~~~~~~~l~klDIE~-GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIER-GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             eeCCCCcCcceeeeccc-ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            34455556688889987 788888887766 7778888764321      12466789999999884322  111     


Q ss_pred             eeCC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 003842          636 FKGG-TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG  708 (792)
Q Consensus       636 ~~~~-~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~  708 (792)
                      |... ...+......+++++|+.+|.|++||--.......+.+...+|..|..+.+|++|++.+...+.+.++.
T Consensus       427 y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             cccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence            1111 222333445689999999999999998444444556778889999999999999998888877777653

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.13  E-value=0.0059  Score=69.81  Aligned_cols=153  Identities=9%  Similarity=0.090  Sum_probs=100.5

Q ss_pred             CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 003842          553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC  632 (792)
Q Consensus       553 h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~  632 (792)
                      +...|.--+++..+++|+.|+.-|.|++|+-..+........+..+.+..++++++ .+++|.|+..|.|.++-+..+..
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCC
Confidence            33445555666788899999999999999987643333334344455566666766 56888899999999998876321


Q ss_pred             E---------EEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----eEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003842          633 T---------RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ----ACRLSLQGHTKPIDSVCWDPSGELLASVSE  699 (792)
Q Consensus       633 ~---------~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~----~~~~~l~~h~~~V~sv~~spdg~~Las~s~  699 (792)
                      .         +..+..+++++|++++.++++|...|.|.+..+...    .....+....+.|.-+.+. ++.+|++.. 
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl-  188 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL-  188 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh-
Confidence            1         123456889999999999999999999999888772    1122233345666666553 233333332 


Q ss_pred             CeEEEEECC
Q 003842          700 DSVRVWTVG  708 (792)
Q Consensus       700 d~I~IwDl~  708 (792)
                      -...+++.+
T Consensus       189 ~r~~Lc~tE  197 (726)
T KOG3621|consen  189 TRCILCQTE  197 (726)
T ss_pred             hhhheeecc
Confidence            233344544

>smart00320 WD40 WD40 repeats

Probab=97.13  E-value=0.0012  Score=45.46  Aligned_cols=38  Identities=32%  Similarity=0.543  Sum_probs=34.2

Q ss_pred             eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003842          503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH  540 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWd  540 (792)
                      +....+..|...|.+++|++++.++++++.|+.|++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            35667788999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.12  E-value=0.016  Score=51.93  Aligned_cols=101  Identities=20%  Similarity=0.232  Sum_probs=67.3

Q ss_pred             eEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003842          515 VICCHFSS---DG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL  590 (792)
Q Consensus       515 V~~lafsp---dg-~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i  590 (792)
                      |+++++..   || +.|++|+.|..|+||+-+  +.+..+.. .+.|++++-... ..|+.+-.+|+|-+|+-...   +
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R---l   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR---L   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce---e
Confidence            66666654   33 589999999999999855  45555553 456777777665 57999999999999987542   2


Q ss_pred             EEecccCCCeEEEEEcC---CCCeEEEEEeCCCcEE
Q 003842          591 RTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIR  623 (792)
Q Consensus       591 ~~~~~h~~~V~sl~fsp---d~~~ll~sgs~Dg~I~  623 (792)
                      ...+ .+..+.++++..   +|..-|++|-.+|.|-
T Consensus        75 WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2222 223366665543   3444566777777764

>PRK13684 Ycf48-like protein; Provisional

Probab=97.09  E-value=0.52  Score=51.75  Aligned_cols=267  Identities=10%  Similarity=0.066  Sum_probs=131.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeEEec----cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLE----EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl-~t~~~~~~l~----~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      ...+++|+|..+.+-+|+|. +|.|  |.. +.|+.-....    .....+.+|.|..+ ..+++ +..|.  ||..++.
T Consensus        45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~--i~~S~Dg  117 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSL--LLHTTDG  117 (334)
T ss_pred             CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCce--EEEECCC
Confidence            55799999986666666664 5543  333 2222222111    12344778888754 33444 44553  3333333


Q ss_pred             CceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE----eeCCeeEEEEecCCCEEEEEEcCC
Q 003842          587 GYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTAQMRFQPHLGRYLAAAAEN  659 (792)
Q Consensus       587 ~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~~~~~~v~~sp~~~~lla~s~dg  659 (792)
                      +.....+.   ........+.....+ .++++ +..|.|..=+ +.++.-..    ..+....+.+.+++ .+++++..|
T Consensus       118 G~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~-g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g-~~v~~g~~G  193 (334)
T PRK13684        118 GKNWTRIPLSEKLPGSPYLITALGPG-TAEMA-TNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDG-KYVAVSSRG  193 (334)
T ss_pred             CCCCeEccCCcCCCCCceEEEEECCC-cceee-eccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCC-eEEEEeCCc
Confidence            33333221   111122222222222 22323 3344333211 12221111    12345567777764 555666666


Q ss_pred             eEEEE-ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEe-ecCCCceEEEEEeCCCCE
Q 003842          660 VVSIL-DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       660 ~I~i~-D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~-~~~~~~i~si~fspdg~~  737 (792)
                      .+..- |.....-......-...++++.+.+++..++++..+.+++=+...+.....+..- ......+..+.+.+++. 
T Consensus       194 ~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-  272 (334)
T PRK13684        194 NFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-  272 (334)
T ss_pred             eEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-
Confidence            65543 2221111112223446789999999999887776655432233444333322111 11224577888998776 


Q ss_pred             EEEEEcCCeEEEEECCCCcEEEEc----ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          738 LLVIGCYQSLELWNMSENKTMTLT----AHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       738 L~sgs~dg~I~IwDl~~~~~~~~~----~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +++++.+|.|. +....++.....    .-....+.+.|..+++.++ .+..|.|..|+
T Consensus       273 ~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        273 IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence            45555667555 345555543221    2223577888877776665 55788887664

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.06  E-value=0.36  Score=51.94  Aligned_cols=267  Identities=13%  Similarity=0.112  Sum_probs=119.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeEEec--cC---CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLE--EH---SSLITDVRFSPSMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~-t~~~~~~l~--~h---~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      ...+.+|+|..+..-+|+|. .+.|  +... .|+.-....  ..   .....+|.|..+ ..++ ++..+ +.+...+ 
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~D-   88 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTTD-   88 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEESS-
T ss_pred             CCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEecC-
Confidence            44789999996666666654 5543  3333 232222111  11   234677888643 3444 44455 3333333 


Q ss_pred             CCceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEe---eCCeeEEEEecCCCEEEEEEcC
Q 003842          586 PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF---KGGTAQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       586 ~~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~---~~~~~~v~~sp~~~~lla~s~d  658 (792)
                      .+..-..+.   ...+....|....++ ..+++ +..|.|+. ..+.++. ....   .+.+..+..++++.+++++...
T Consensus        89 gG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~-~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G  165 (302)
T PF14870_consen   89 GGKTWERVPLSSKLPGSPFGITALGDG-SAELA-GDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG  165 (302)
T ss_dssp             TTSS-EE----TT-SS-EEEEEEEETT-EEEEE-ETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred             CCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEE-cCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence            344333322   122334444444443 33323 33444332 1222221 1111   2345556667777666555555


Q ss_pred             CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC-CCCCc-ceEEEeecCCCceEEEEEeCCCC
Q 003842          659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG-SGSEG-ECVHELSCNGNKFHSCVFHPTYP  736 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~-s~~~~-~~i~~~~~~~~~i~si~fspdg~  736 (792)
                      ..+.-||.-...-...-......|.++.|.+++.+.+.+..+.|++=+.. ..+.. +.+..+......+..++|.++..
T Consensus       166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~  245 (302)
T PF14870_consen  166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE  245 (302)
T ss_dssp             SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred             cEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC
Confidence            55667776543222222334578999999999888776644477776621 11110 11111222344588999998877


Q ss_pred             EEEEEEcCCeEEEEECCCCcEEEEc----ccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          737 SLLVIGCYQSLELWNMSENKTMTLT----AHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       737 ~L~sgs~dg~I~IwDl~~~~~~~~~----~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ..++ +..|.| +...+.++.-...    .-...++.|.|..+.+-+| .+.||.|.-|
T Consensus       246 ~wa~-gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~  301 (302)
T PF14870_consen  246 IWAV-GGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY  301 (302)
T ss_dssp             EEEE-ESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred             EEEE-eCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence            5554 444544 3456666655322    2345688888876655554 4689988766

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.54  Score=49.18  Aligned_cols=252  Identities=12%  Similarity=0.042  Sum_probs=140.4

Q ss_pred             CCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeEEeccCCCCEEEEEECC
Q 003842          488 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSP  564 (792)
Q Consensus       488 d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~---~~~~l~~h~~~V~~i~fsp  564 (792)
                      +.+.++.|+....+-.++..+... +--.|+..  .|+++.++..|.-+.++|+.+..   ....+......-+.++.+ 
T Consensus       105 ssGL~IvDIS~P~sP~~~~~lnt~-gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS-  180 (370)
T COG5276         105 SSGLRIVDISTPDSPTLIGFLNTD-GYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS-  180 (370)
T ss_pred             CCceEEEeccCCCCcceeccccCC-ceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe-
Confidence            456677888877666666665542 33344444  57788888867677788887543   334444445555666665 


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCC-CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC----C
Q 003842          565 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA-SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----G  639 (792)
Q Consensus       565 dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~-~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~  639 (792)
                       |++-+.+..|+-+.|-|+.++..++..-.-..+ .+.++..+++.. ++  ...+--+.+-|....+....+..    .
T Consensus       181 -Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~--vvy~egvlivd~s~~ssp~~~gsyet~~  256 (370)
T COG5276         181 -GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YL--VVYDEGVLIVDVSGPSSPTVFGSYETSN  256 (370)
T ss_pred             -cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee-EE--EEcccceEEEecCCCCCceEeeccccCC
Confidence             668888889999999999986655443332233 677887776532 22  23355577778776664443321    1


Q ss_pred             eeEE-EEecCCCEEEEEEcCCeEEEEECCCCeEEE---EecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcce
Q 003842          640 TAQM-RFQPHLGRYLAAAAENVVSILDAETQACRL---SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGEC  715 (792)
Q Consensus       640 ~~~v-~~sp~~~~lla~s~dg~I~i~D~~t~~~~~---~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~  715 (792)
                      ..++ .+.-.+++..++..+..+-+.|..+....+   .+......-..+..  .+.++..+..+...+.|....+   .
T Consensus       257 p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn~g~vV~~s~~s---~  331 (370)
T COG5276         257 PVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKNTGAVVDASPPS---M  331 (370)
T ss_pred             cccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEeccCCceEEEeCCChh---h
Confidence            1111 344455666666666666666765542111   11111111122221  2444444444445555554321   1


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003842          716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM  752 (792)
Q Consensus       716 i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl  752 (792)
                      .....+....+.++..+-+.+.+.+...++.+.||+.
T Consensus       332 m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         332 MDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             cccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence            1111122223445555555667778888888888875

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.03  E-value=0.03  Score=65.88  Aligned_cols=217  Identities=14%  Similarity=0.075  Sum_probs=114.6

Q ss_pred             CCCeEEEEeCCC------cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcCCCee
Q 003842          565 SMPRLATSSFDK------TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSC  632 (792)
Q Consensus       565 dg~~Lasgs~Dg------~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D------g~I~iwdl~~~~~  632 (792)
                      .+.++++|+.++      .|..||..++......-......-.++++..  +.++++|+.|      .++..||..+...
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCce
Confidence            345667777763      5778888874222211112333344555553  3678889888      3577888887774


Q ss_pred             EEEe--eCCeeEEEEec-CCCEEEEEEcCC-----eEEEEECCCCeEEEEecCCCCCeEEEE-EcCCCCEEEEEeCC---
Q 003842          633 TRVF--KGGTAQMRFQP-HLGRYLAAAAEN-----VVSILDAETQACRLSLQGHTKPIDSVC-WDPSGELLASVSED---  700 (792)
Q Consensus       633 ~~~~--~~~~~~v~~sp-~~~~lla~s~dg-----~I~i~D~~t~~~~~~l~~h~~~V~sv~-~spdg~~Las~s~d---  700 (792)
                      ...-  ...-..+.... ++..+++|+.||     .|..||.++.+-...-.-.. ...... ..-+|++.++|+.+   
T Consensus       362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSS  440 (571)
T ss_pred             eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCc
Confidence            4421  12222222222 344555666665     57888887754322111111 111111 22357766666633   


Q ss_pred             ----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEEcccCCCeEEEE
Q 003842          701 ----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTLTAHEGLIAALA  771 (792)
Q Consensus       701 ----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~~~~h~~~V~sl~  771 (792)
                          .+..||..+. .+..+..+........  +-.-++...++||.|+     +|..||..+.+...+..-......+.
T Consensus       441 ~~l~sve~YDP~t~-~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g  517 (571)
T KOG4441|consen  441 NCLNSVECYDPETN-TWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG  517 (571)
T ss_pred             cccceEEEEcCCCC-ceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc
Confidence                4778887764 2222222222222222  2223566677777665     58889999988775543222222222


Q ss_pred             E-eCCCCEEEEEeCCCc
Q 003842          772 V-STETGYVASASHDKF  787 (792)
Q Consensus       772 f-spdg~~LaSgs~DG~  787 (792)
                      . .-++...++|+.||.
T Consensus       518 ~~~~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  518 VVVLGGKLYAVGGFDGN  534 (571)
T ss_pred             EEEECCEEEEEecccCc
Confidence            1 225667778888765

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.00  E-value=0.2  Score=52.71  Aligned_cols=189  Identities=13%  Similarity=0.103  Sum_probs=103.7

Q ss_pred             CeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEE-ECCCCeE-EEE
Q 003842          599 SVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL-DAETQAC-RLS  674 (792)
Q Consensus       599 ~V~sl~fspd~~~ll~sgs~D--g~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~-D~~t~~~-~~~  674 (792)
                      .+.+.++++++..+.+....+  ..++++...................|.+++...++...+....++ +...+.. ...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~  104 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE  104 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence            688999999998877766333  445555443222222222355667899995555555555665655 3333322 111


Q ss_pred             ec--CCCCCeEEEEEcCCCCEEEEEe----CCeEEEEECCCCCCc------ceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003842          675 LQ--GHTKPIDSVCWDPSGELLASVS----EDSVRVWTVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIG  742 (792)
Q Consensus       675 l~--~h~~~V~sv~~spdg~~Las~s----~d~I~IwDl~s~~~~------~~i~~~~~~~~~i~si~fspdg~~L~sgs  742 (792)
                      +.  .....|..+.++|||..++...    ...|.|--+......      ..+.........+..+.|.+++.+++.+.
T Consensus       105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~  184 (253)
T PF10647_consen  105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR  184 (253)
T ss_pred             ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence            21  1122899999999999888766    336776655432222      12222223356789999999998777766


Q ss_pred             cCCe-EEE-EECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003842          743 CYQS-LEL-WNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFV  788 (792)
Q Consensus       743 ~dg~-I~I-wDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I  788 (792)
                      ..+. +.. +....+....+..-...+..++...+...++.. +++.|
T Consensus       185 ~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t-~~~~~  231 (253)
T PF10647_consen  185 SAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVT-DDGGV  231 (253)
T ss_pred             CCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEE-CCCcE
Confidence            5542 333 444444333332223333334444444444433 34433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>smart00320 WD40 WD40 repeats

Probab=96.99  E-value=0.0019  Score=44.35  Aligned_cols=39  Identities=36%  Similarity=0.537  Sum_probs=34.3

Q ss_pred             CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          544 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       544 ~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      ++.+..+..|...|.++.|.+++.++++++.|+.|++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345666778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=0.084  Score=57.83  Aligned_cols=120  Identities=16%  Similarity=0.178  Sum_probs=87.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce----eEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG  587 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~----~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~  587 (792)
                      .++|.++.||+|.+.||+--.|++|.+++....+.    ..+.+.....|...+|+.+ .-+|.-...| +-+|-+....
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek  143 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK  143 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh
Confidence            56899999999999999999999999999843222    2233345566899999876 5666666666 8888888767


Q ss_pred             ceeEEecccCCCeEEEEEcCCCCeEEEEEe-CCCcEEEEEcCCCeeE
Q 003842          588 YSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCT  633 (792)
Q Consensus       588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs-~Dg~I~iwdl~~~~~~  633 (792)
                      ..++..+.|...|....|+++..-++.+.+ ..+++.=+-++++...
T Consensus       144 rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~  190 (657)
T KOG2377|consen  144 RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTMS  190 (657)
T ss_pred             hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeeceee
Confidence            778888899999999999998765554444 3444444555544433

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.88  E-value=0.59  Score=52.02  Aligned_cols=102  Identities=19%  Similarity=0.209  Sum_probs=59.6

Q ss_pred             CCeEEEEEcCCCCEEEEEe-----------CCC-eEEEEECCC--Cc--eeEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 003842          513 SKVICCHFSSDGKLLATGG-----------HDK-KAVLWHTDT--LK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDK  576 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs-----------~Dg-~I~vWdl~t--~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg  576 (792)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  ++  ....+.......+.|+|.+++  |++++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            4578899999999777653           223 777776542  33  234444445567889999888  44445554


Q ss_pred             cEEEEeCCCCC----c--ee-EEecc----cCCCeEEEEEcCCCCeEEEEE
Q 003842          577 TVRVWDADNPG----Y--SL-RTFMG----HSASVMSLDFHPNKDDLICSC  616 (792)
Q Consensus       577 ~V~IWdl~s~~----~--~i-~~~~~----h~~~V~sl~fspd~~~ll~sg  616 (792)
                      .+++.|.+..+    .  .+ ..+..    +......++|.|||..++..+
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            33444554321    1  11 12222    134477899999986555444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.87  E-value=0.24  Score=60.03  Aligned_cols=112  Identities=19%  Similarity=0.209  Sum_probs=69.1

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccCCC--------CEEEEEECC----------------CCCeEEEEeCCCcEE
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS--------LITDVRFSP----------------SMPRLATSSFDKTVR  579 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~--------~V~~i~fsp----------------dg~~Lasgs~Dg~V~  579 (792)
                      +..|++++.++.|+-.|..+|+.+-++.....        .+..+.+..                ++..|+.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            44777777888888899998888877653221        122233321                344788899999999


Q ss_pred             EEeCCCCCceeEEecccCCCeE-------------EEEEcC--CCCeEEEEEeC----------CCcEEEEEcCCCeeEE
Q 003842          580 VWDADNPGYSLRTFMGHSASVM-------------SLDFHP--NKDDLICSCDG----------DGEIRYWSINNGSCTR  634 (792)
Q Consensus       580 IWdl~s~~~~i~~~~~h~~~V~-------------sl~fsp--d~~~ll~sgs~----------Dg~I~iwdl~~~~~~~  634 (792)
                      -.|.++ ++.+..+. ..+.|.             .+.-.|  .++ ++++|+.          +|.|+-+|+++|+.+.
T Consensus       274 ALDA~T-Gk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       274 ALDADT-GKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEECCC-CCEEEEec-CCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            999988 55554432 111110             000011  023 3334432          6889999999999998


Q ss_pred             EeeC
Q 003842          635 VFKG  638 (792)
Q Consensus       635 ~~~~  638 (792)
                      .+..
T Consensus       351 ~~~~  354 (764)
T TIGR03074       351 AWDP  354 (764)
T ss_pred             EEec
Confidence            7763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.86  E-value=0.92  Score=48.82  Aligned_cols=222  Identities=12%  Similarity=0.106  Sum_probs=104.7

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEeccc-----CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 003842          554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-----SASVMSLDFHPNKDDLICSCDGDGEIRYWSIN  628 (792)
Q Consensus       554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h-----~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~  628 (792)
                      ...+.+|.|..+..-+++|. .+.  |+...++++.-......     .....+|.|..  ...+++| ..+ +.+...+
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~D   88 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTD   88 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESS
T ss_pred             CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecC
Confidence            45789999996555566654 453  44444444332222111     12366777764  3445444 344 4444444


Q ss_pred             CCeeEEEe------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-e
Q 003842          629 NGSCTRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S  701 (792)
Q Consensus       629 ~~~~~~~~------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~  701 (792)
                      .++.-..+      .+....+....+ ...++++..|.|+.-.-....-......-...+..+..++||++++++..+ .
T Consensus        89 gG~tW~~v~l~~~lpgs~~~i~~l~~-~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~  167 (302)
T PF14870_consen   89 GGKTWERVPLSSKLPGSPFGITALGD-GSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF  167 (302)
T ss_dssp             TTSS-EE----TT-SS-EEEEEEEET-TEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred             CCCCcEEeecCCCCCCCeeEEEEcCC-CcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence            44322221      122223333333 344444555544432222122223334455678889999999999999888 5


Q ss_pred             EEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC-CCCcEEEE--c---ccCCCeEEEEEeCC
Q 003842          702 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMTL--T---AHEGLIAALAVSTE  775 (792)
Q Consensus       702 I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl-~~~~~~~~--~---~h~~~V~sl~fspd  775 (792)
                      +.-||-... ....  ........|..+.|.|++...+ ....|.|++=+. ...+....  .   .....+.+++|.++
T Consensus       168 ~~s~~~G~~-~w~~--~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~  243 (302)
T PF14870_consen  168 YSSWDPGQT-TWQP--HNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP  243 (302)
T ss_dssp             EEEE-TT-S-S-EE--EE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred             EEEecCCCc-cceE--EccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence            667875321 1122  2222457899999999987555 457888888872 22222211  1   12234889999998


Q ss_pred             CCEEEEEeCCCcE
Q 003842          776 TGYVASASHDKFV  788 (792)
Q Consensus       776 g~~LaSgs~DG~I  788 (792)
                      +...|+|+ .|.|
T Consensus       244 ~~~wa~gg-~G~l  255 (302)
T PF14870_consen  244 NEIWAVGG-SGTL  255 (302)
T ss_dssp             S-EEEEES-TT-E
T ss_pred             CCEEEEeC-CccE
Confidence            88877665 4444

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.84  E-value=0.014  Score=69.65  Aligned_cols=101  Identities=20%  Similarity=0.277  Sum_probs=72.8

Q ss_pred             CCCEEEEEeCCCeEEEEECCCC-ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeE
Q 003842          523 DGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM  601 (792)
Q Consensus       523 dg~~Lasgs~Dg~I~vWdl~t~-~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~  601 (792)
                      -+..++.|+..|.|..+|+... .....=+.-.++|++++|+.+|+.++.|-.+|.|.+||+.. +..++.+..|..+++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence            3447888998999988887653 22122223467899999999999999999999999999997 677777777776665


Q ss_pred             EEEE---cCCCCeEEEEEeCCCcEEEEEc
Q 003842          602 SLDF---HPNKDDLICSCDGDGEIRYWSI  627 (792)
Q Consensus       602 sl~f---spd~~~ll~sgs~Dg~I~iwdl  627 (792)
                      ++-+   ..++. .+++++..|.  +|.+
T Consensus       177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence            5544   33333 5557766665  5554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.84  E-value=0.0014  Score=65.60  Aligned_cols=139  Identities=14%  Similarity=0.048  Sum_probs=82.4

Q ss_pred             eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-EEee---CCeeE-
Q 003842          568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFK---GGTAQ-  642 (792)
Q Consensus       568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~-~~~~---~~~~~-  642 (792)
                      .|..-+.||.|+-++++......+....+...-.-+.+    ..-+++|+.+|.|++|+.+..... ..+.   ..+.+ 
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~----~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~  107 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA----SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG  107 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc----CceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence            34555678888888776533222222222222111122    223558888999999988732211 1111   11111 


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC-CCeEEEEEcCCCCEEEEE--eCC-eEEEEECCCC
Q 003842          643 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-KPIDSVCWDPSGELLASV--SED-SVRVWTVGSG  710 (792)
Q Consensus       643 v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~-~~V~sv~~spdg~~Las~--s~d-~I~IwDl~s~  710 (792)
                      +....++.+.++++.+|.|+.|++.-.+.+.....|. .++..+..+..+++|+..  +.| .++.|++...
T Consensus       108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            2222334467788889999999999888887777777 556666666666777666  666 7777877543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.79  E-value=0.32  Score=50.97  Aligned_cols=191  Identities=16%  Similarity=0.230  Sum_probs=108.0

Q ss_pred             cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003842          594 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ  669 (792)
Q Consensus       594 ~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~  669 (792)
                      .+....|.++.|+|+.+.||++.. ...-.+|=...|..++++.    .....+.+..++.+.++--.+..++++.+...
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n-~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTN-KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCCCcceEEEecC-CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            455566999999999888886655 4445555555688887764    23445677766555555555777777766544


Q ss_pred             eEE-------EEec--CC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC-------CCceEEEEE
Q 003842          670 ACR-------LSLQ--GH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVF  731 (792)
Q Consensus       670 ~~~-------~~l~--~h-~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~-------~~~i~si~f  731 (792)
                      ..+       ..+.  .+ +.....++|++....|+.+-+. -+.||.+......-.++....+       -..+.++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            221       1121  12 5567889999988877777665 4555544322211111111111       123667788


Q ss_pred             eCCCCEEEEE-EcCCeEEEEECCCCcEE--EEcccC----C---CeEEEEEeCCCCEEEEEeCCC
Q 003842          732 HPTYPSLLVI-GCYQSLELWNMSENKTM--TLTAHE----G---LIAALAVSTETGYVASASHDK  786 (792)
Q Consensus       732 spdg~~L~sg-s~dg~I~IwDl~~~~~~--~~~~h~----~---~V~sl~fspdg~~LaSgs~DG  786 (792)
                      ++....|++- ..++.|.-.|....-.-  .+.+..    .   ....++..++|.+.+ .|+-+
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI-vSEPn  304 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI-VSEPN  304 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEE-EecCC
Confidence            8755555444 45566777777655322  222211    1   234677777776444 34433

>PHA02713 hypothetical protein; Provisional

Probab=96.79  E-value=0.097  Score=61.60  Aligned_cols=175  Identities=6%  Similarity=-0.009  Sum_probs=86.9

Q ss_pred             CeEEEEEeCC------CcEEEEEcCCCeeEEEe--eCCe-eEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEEE--
Q 003842          610 DDLICSCDGD------GEIRYWSINNGSCTRVF--KGGT-AQMRFQPHLGRYLAAAAEN-----VVSILDAETQACRL--  673 (792)
Q Consensus       610 ~~ll~sgs~D------g~I~iwdl~~~~~~~~~--~~~~-~~v~~sp~~~~lla~s~dg-----~I~i~D~~t~~~~~--  673 (792)
                      +.+++.||.+      ..+..||..+......-  .... ......-++..+++|+.++     .+.+||..+.+-..  
T Consensus       304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~  383 (557)
T PHA02713        304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP  383 (557)
T ss_pred             CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence            4677777753      34778898877543221  1111 1122233444555566543     58889988764322  


Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCC------------------------eEEEEECCCCCCcceEEEeecCCCceEEE
Q 003842          674 SLQGHTKPIDSVCWDPSGELLASVSED------------------------SVRVWTVGSGSEGECVHELSCNGNKFHSC  729 (792)
Q Consensus       674 ~l~~h~~~V~sv~~spdg~~Las~s~d------------------------~I~IwDl~s~~~~~~i~~~~~~~~~i~si  729 (792)
                      .+.........+.  -+|++.+.|+.+                        .+..||..+. .+..+..+...  .....
T Consensus       384 ~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td-~W~~v~~m~~~--r~~~~  458 (557)
T PHA02713        384 DMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN-IWETLPNFWTG--TIRPG  458 (557)
T ss_pred             CCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC-eEeecCCCCcc--cccCc
Confidence            1111111111222  256766666532                        3666776653 12222222111  11222


Q ss_pred             EEeCCCCEEEEEEcC------CeEEEEECCC-CcEEEEc---ccCCCeEEEEEeCCCCEEEEEeCCC--cEEEe
Q 003842          730 VFHPTYPSLLVIGCY------QSLELWNMSE-NKTMTLT---AHEGLIAALAVSTETGYVASASHDK--FVKLW  791 (792)
Q Consensus       730 ~fspdg~~L~sgs~d------g~I~IwDl~~-~~~~~~~---~h~~~V~sl~fspdg~~LaSgs~DG--~I~IW  791 (792)
                      +..-+++..++|+.+      ..|..||..+ ++...+.   ........+.+  ++++.++||.||  .+..|
T Consensus       459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~y  530 (557)
T PHA02713        459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTF  530 (557)
T ss_pred             EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhc
Confidence            233355666666654      2478899988 5554222   22222222232  778888999888  44444

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.79  E-value=0.85  Score=48.20  Aligned_cols=196  Identities=15%  Similarity=0.136  Sum_probs=115.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECC-------CCceeEEecc-----CCCCEEEEEECCCCC------------eEE
Q 003842          515 VICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNLEE-----HSSLITDVRFSPSMP------------RLA  570 (792)
Q Consensus       515 V~~lafspdg~~Lasgs~Dg~I~vWdl~-------t~~~~~~l~~-----h~~~V~~i~fspdg~------------~La  570 (792)
                      -+.|+|+|.+.+-++....+...+||..       ....+.++..     .....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            5789999999888888788999999986       1123344432     234678888875322            378


Q ss_pred             EEeCCCcEEEEeCCCCCc----eeEEecc-cCCCe-EEEEEcC--CCCeEEEEEeCCCcEEEEEcCCCeeEE--EeeCCe
Q 003842          571 TSSFDKTVRVWDADNPGY----SLRTFMG-HSASV-MSLDFHP--NKDDLICSCDGDGEIRYWSINNGSCTR--VFKGGT  640 (792)
Q Consensus       571 sgs~Dg~V~IWdl~s~~~----~i~~~~~-h~~~V-~sl~fsp--d~~~ll~sgs~Dg~I~iwdl~~~~~~~--~~~~~~  640 (792)
                      .+++||+|.-|.-.-...    .+..+.. ....| +.+++..  .+..|.++--..+.|.+||-.-.+...  .|..+.
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~  184 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA  184 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence            889999999998543211    1222221 12333 3455543  355666666678999999865443221  121111


Q ss_pred             eE----------------EEE---ecCCCEEEEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcC------CCCE
Q 003842          641 AQ----------------MRF---QPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDP------SGEL  693 (792)
Q Consensus       641 ~~----------------v~~---sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~--~h~~~V~sv~~sp------dg~~  693 (792)
                      ..                +.|   .++...-+.+..-|.|.+||+.. ..+.++.  +.-..-+.|+..|      .|.+
T Consensus       185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l  263 (336)
T TIGR03118       185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLSGAL  263 (336)
T ss_pred             CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence            00                111   11222223333457899999864 4444442  2233345666655      5667


Q ss_pred             EEEEeCC-eEEEEECCCCC
Q 003842          694 LASVSED-SVRVWTVGSGS  711 (792)
Q Consensus       694 Las~s~d-~I~IwDl~s~~  711 (792)
                      |+.--.| +|..||..++.
T Consensus       264 LVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       264 LVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             EEeecCCceeEEecCCCCc
Confidence            7776666 99999998773

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.79  E-value=0.073  Score=47.82  Aligned_cols=100  Identities=15%  Similarity=0.150  Sum_probs=65.9

Q ss_pred             eEEEEEcC---CC-CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003842          682 IDSVCWDP---SG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       682 V~sv~~sp---dg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~  756 (792)
                      |+++++..   +| +.|++|++| .|++|+-.     ..+.++.. ...+.+++-... ..|+.+-.+|+|-+|+-....
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee
Confidence            55666554   33 478889999 99999854     45555554 345666665555 569999999999999874433


Q ss_pred             EEEEcccCCCeEEEEEeC-C--C-CEEEEEeCCCcEEE
Q 003842          757 TMTLTAHEGLIAALAVST-E--T-GYVASASHDKFVKL  790 (792)
Q Consensus       757 ~~~~~~h~~~V~sl~fsp-d--g-~~LaSgs~DG~I~I  790 (792)
                      ...  .....++++++.. +  | .-|++|-.+|.|-+
T Consensus        75 WRi--KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   75 WRI--KSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eee--ccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            222  2333466666644 2  2 25888888998754

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.65  E-value=1.6  Score=48.63  Aligned_cols=149  Identities=14%  Similarity=0.126  Sum_probs=87.6

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeEEeccC--CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccC-C
Q 003842          522 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-A  598 (792)
Q Consensus       522 pdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h--~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~-~  598 (792)
                      -|| .++++..+|.|.-+|.++++.+-....-  ...+.+-.+..+| .|++++.+|.++.+|.++ +..+..+.... .
T Consensus        67 ~dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-~i~~g~~~g~~y~ld~~~-G~~~W~~~~~~~~  143 (370)
T COG1520          67 GDG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-KIYVGSWDGKLYALDAST-GTLVWSRNVGGSP  143 (370)
T ss_pred             eCC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-eEEEecccceEEEEECCC-CcEEEEEecCCCe
Confidence            344 4555577888888888888765433222  1222222333355 488888999888888875 55555554444 1


Q ss_pred             CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe-eE--EEE--ecCCCEEEEEEc--CCeEEEEECCCCeE
Q 003842          599 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT-AQ--MRF--QPHLGRYLAAAA--ENVVSILDAETQAC  671 (792)
Q Consensus       599 ~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~-~~--v~~--sp~~~~lla~s~--dg~I~i~D~~t~~~  671 (792)
                      .+..-.+..++  .++.++.++.+...|..+++.+..+.... ..  +..  ....+.++++..  ++.+.-+|.+++..
T Consensus       144 ~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~  221 (370)
T COG1520         144 YYASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTL  221 (370)
T ss_pred             EEecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcE
Confidence            12222222232  34445478999999999888876654322 11  111  123455666655  66788888888877


Q ss_pred             EEEe
Q 003842          672 RLSL  675 (792)
Q Consensus       672 ~~~l  675 (792)
                      +...
T Consensus       222 ~w~~  225 (370)
T COG1520         222 KWSQ  225 (370)
T ss_pred             eeee
Confidence            7664

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.59  E-value=0.18  Score=52.29  Aligned_cols=169  Identities=18%  Similarity=0.189  Sum_probs=107.5

Q ss_pred             cCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEecCCCCC--
Q 003842          606 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKP--  681 (792)
Q Consensus       606 spd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~--dg~I~i~D~~t~~~~~~l~~h~~~--  681 (792)
                      ..|+.+.+++.+++|.|..-        ..+......+.++|....-++...  .-...+||........++...+..  
T Consensus        44 ~~dgs~g~a~~~eaGk~v~~--------~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf  115 (366)
T COG3490          44 ARDGSFGAATLSEAGKIVFA--------TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF  115 (366)
T ss_pred             ccCCceeEEEEccCCceeee--------eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee
Confidence            45666666666655544321        112233445777777666554443  335678888777554444322211  


Q ss_pred             eEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-------C---
Q 003842          682 IDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-------Q---  745 (792)
Q Consensus       682 V~sv~~spdg~~Las~s~d------~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-------g---  745 (792)
                      .-.-+|++||.+|+..-.|      .|-|||.+  .....+.++..++-....+.|.+||+.++++...       |   
T Consensus       116 yGHGvfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~  193 (366)
T COG3490         116 YGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTE  193 (366)
T ss_pred             ecccccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccc
Confidence            2234699999999876544      58999998  3456778888898889999999999988887541       1   


Q ss_pred             --------eEEEEECCCCcEE---EEc--ccCCCeEEEEEeCCCCEEEEEeC
Q 003842          746 --------SLELWNMSENKTM---TLT--AHEGLIAALAVSTETGYVASASH  784 (792)
Q Consensus       746 --------~I~IwDl~~~~~~---~~~--~h~~~V~sl~fspdg~~LaSgs~  784 (792)
                              ++.+.|..++.++   ++.  .+.-.|..++..+||..++.|-.
T Consensus       194 lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy  245 (366)
T COG3490         194 LNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY  245 (366)
T ss_pred             cchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence                    3445555555544   222  34567888999999887776543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.59  E-value=1.7  Score=48.36  Aligned_cols=218  Identities=10%  Similarity=0.038  Sum_probs=101.6

Q ss_pred             CCCeEEEEe-CCCcEEEEeCCCCCc---eeEEecc---cC----CCeEEEEEcCCCCeEEEEE--eC----CCcEEEEEc
Q 003842          565 SMPRLATSS-FDKTVRVWDADNPGY---SLRTFMG---HS----ASVMSLDFHPNKDDLICSC--DG----DGEIRYWSI  627 (792)
Q Consensus       565 dg~~Lasgs-~Dg~V~IWdl~s~~~---~i~~~~~---h~----~~V~sl~fspd~~~ll~sg--s~----Dg~I~iwdl  627 (792)
                      +.++|+..+ ..+.|+|+|+.+...   ..+.+..   +.    ..-..+-..|+|..+| ++  +.    -|.+.++|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcC
Confidence            455777776 677899999985332   2333331   11    1122233346665444 43  22    256888898


Q ss_pred             CCCeeEEEeeCC------eeEEEEecCCCEEEEEEc--------------------CCeEEEEECCCCeEEEEecCCCC-
Q 003842          628 NNGSCTRVFKGG------TAQMRFQPHLGRYLAAAA--------------------ENVVSILDAETQACRLSLQGHTK-  680 (792)
Q Consensus       628 ~~~~~~~~~~~~------~~~v~~sp~~~~lla~s~--------------------dg~I~i~D~~t~~~~~~l~~h~~-  680 (792)
                      ++.+.....+..      ...+.|.|..+.+++...                    ...+.+||+.+.+.+.++.-... 
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            888877766542      244677888777776542                    34799999999999988875432 


Q ss_pred             -CeEEEEEcC--CCCEEEE-EeCC-eEEEEECCCCCCc--ceEEEeecC-----------------CCceEEEEEeCCCC
Q 003842          681 -PIDSVCWDP--SGELLAS-VSED-SVRVWTVGSGSEG--ECVHELSCN-----------------GNKFHSCVFHPTYP  736 (792)
Q Consensus       681 -~V~sv~~sp--dg~~Las-~s~d-~I~IwDl~s~~~~--~~i~~~~~~-----------------~~~i~si~fspdg~  736 (792)
                       ....|.|..  +..+=++ +.-. .|..|--......  +.+..+...                 ..-|+.|.+|.|.+
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr  324 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR  324 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred             CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence             244566654  4444333 3333 5555443222222  122222111                 23478999999999


Q ss_pred             EEEEEEc-CCeEEEEECCCCcEEE-----Ecc---------------cCCCeEEEEEeCCCCEEEEEe
Q 003842          737 SLLVIGC-YQSLELWNMSENKTMT-----LTA---------------HEGLIAALAVSTETGYVASAS  783 (792)
Q Consensus       737 ~L~sgs~-dg~I~IwDl~~~~~~~-----~~~---------------h~~~V~sl~fspdg~~LaSgs  783 (792)
                      +|++.+. .|.|+.||+.....-.     ..+               -.+...-|..|-||+.|+..+
T Consensus       325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            9998886 5899999998743221     111               112346678888998877654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.57  E-value=1.9  Score=48.47  Aligned_cols=109  Identities=12%  Similarity=0.112  Sum_probs=67.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcc--eEEEeec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003842          679 TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE--CVHELSC--NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       679 ~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~--~i~~~~~--~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~  754 (792)
                      ...+..+.|.+++.+++++..+.+ +|....+....  .+.....  ....+..+.|.+++. +++++..|.|.... ..
T Consensus       280 ~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~  356 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DG  356 (398)
T ss_pred             ccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CC
Confidence            456889999999998887755543 34433332111  2222222  223588888987776 55666667666553 45


Q ss_pred             CcEEEE----cccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          755 NKTMTL----TAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       755 ~~~~~~----~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ++....    ..-...++.+.|.++++.+++ +.+|.|.-|
T Consensus       357 G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~  396 (398)
T PLN00033        357 GKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY  396 (398)
T ss_pred             CcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence            554322    233457889999877766665 578888766

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.013  Score=66.38  Aligned_cols=90  Identities=16%  Similarity=0.188  Sum_probs=74.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceE-EEEEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 003842          680 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH-SCVFHPTYPSLLVIGCYQSLELWNMSENKT  757 (792)
Q Consensus       680 ~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~-si~fspdg~~L~sgs~dg~I~IwDl~~~~~  757 (792)
                      ..|.-+.|+|.-.+||.+..+ .|.++.++    ...+.++..++..++ +++|.|||+.|++|-.||+|++.|+.++..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            457789999999999999988 78888875    266777776666666 999999999999999999999999999987


Q ss_pred             EEE--cccCCCeEEEEEe
Q 003842          758 MTL--TAHEGLIAALAVS  773 (792)
Q Consensus       758 ~~~--~~h~~~V~sl~fs  773 (792)
                      +.-  ......|.++.|+
T Consensus        97 l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWD  114 (665)
T ss_pred             eeccccccccchheeecc
Confidence            733  4556778888886

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=96.38  E-value=1.2  Score=54.49  Aligned_cols=176  Identities=13%  Similarity=0.207  Sum_probs=102.1

Q ss_pred             cCCCCEEEEEEC---C--C--CCeEEEEeCCCcEEEEeC------CCCC--------ceeEEecc---cCCCeEEEEEcC
Q 003842          552 EHSSLITDVRFS---P--S--MPRLATSSFDKTVRVWDA------DNPG--------YSLRTFMG---HSASVMSLDFHP  607 (792)
Q Consensus       552 ~h~~~V~~i~fs---p--d--g~~Lasgs~Dg~V~IWdl------~s~~--------~~i~~~~~---h~~~V~sl~fsp  607 (792)
                      ....+|..|+|.   .  +  .++|+ .-....+.|+..      ....        .++..+..   ......+++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~-Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLA-VRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEE-EEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456788888887   2  1  22444 444455666661      1100        12333331   234677899999


Q ss_pred             CCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEE
Q 003842          608 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW  687 (792)
Q Consensus       608 d~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~  687 (792)
                      ....-||+.+..|...|||+......+   ..          ...+.....|.| ++|.+..          .....|+|
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~---~~----------~~~~~~~~~gsi-~~d~~e~----------s~w~rI~W  211 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRK---SS----------NLRLSRNISGSI-IFDPEEL----------SNWKRILW  211 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccC---Cc----------ceeeccCCCccc-cCCCccc----------CcceeeEe
Confidence            888889999999999999992211110   00          111111122333 2332211          44567899


Q ss_pred             cCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC
Q 003842          688 DPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       688 spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-~L~sgs~dg~I~IwDl~~  754 (792)
                      ..+...|+.++...+.++|+++......+ ........|..+.-+++.. ++++. ....|..+|+..
T Consensus       212 ~~~~~~lLv~~r~~l~~~d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~  277 (765)
T PF10214_consen  212 VSDSNRLLVCNRSKLMLIDFESNWQTEYL-VTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS  277 (765)
T ss_pred             cCCCCEEEEEcCCceEEEECCCCCccchh-ccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence            99989999999989999999876442322 1223445688888777632 33333 335677777766

These proteins are found in fungi.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.28  E-value=0.78  Score=47.60  Aligned_cols=207  Identities=16%  Similarity=0.113  Sum_probs=120.5

Q ss_pred             EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE-
Q 003842          557 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-  635 (792)
Q Consensus       557 V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~-  635 (792)
                      -..|+-.+||..-+++...+.|--.|-.+ ++....-.+....-..|..-||+...|+  ....-|.-+|-++.+..+. 
T Consensus        64 p~dvapapdG~VWft~qg~gaiGhLdP~t-Gev~~ypLg~Ga~Phgiv~gpdg~~Wit--d~~~aI~R~dpkt~evt~f~  140 (353)
T COG4257          64 PFDVAPAPDGAVWFTAQGTGAIGHLDPAT-GEVETYPLGSGASPHGIVVGPDGSAWIT--DTGLAIGRLDPKTLEVTRFP  140 (353)
T ss_pred             ccccccCCCCceEEecCccccceecCCCC-CceEEEecCCCCCCceEEECCCCCeeEe--cCcceeEEecCcccceEEee
Confidence            45667778888888888888887778777 4444433444555667788888875552  2222566666665554332 


Q ss_pred             e-----eCCeeEEEEecCCCEEEEEEc---------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-
Q 003842          636 F-----KGGTAQMRFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-  700 (792)
Q Consensus       636 ~-----~~~~~~v~~sp~~~~lla~s~---------dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-  700 (792)
                      +     ........|.+.+...+++..         .+.|++|+.-.          ...-..||..|+|...++.-.+ 
T Consensus       141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdGsvwyaslagn  210 (353)
T COG4257         141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDGSVWYASLAGN  210 (353)
T ss_pred             cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcceEECCCCcEEEEecccc
Confidence            1     234456778888777776653         23445554432          2345678889999987776555 


Q ss_pred             eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCC
Q 003842          701 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETG  777 (792)
Q Consensus       701 ~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fspdg~  777 (792)
                      .|...|-.++.. +.+..-.........+-.+|.++.-++....+.++-||-......  .+.+....-.++.....++
T Consensus       211 aiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr  288 (353)
T COG4257         211 AIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR  288 (353)
T ss_pred             ceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence            677777655421 222222222333455556677777777666677777776654433  2333333344444444333

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.26  E-value=0.92  Score=50.88  Aligned_cols=41  Identities=10%  Similarity=0.041  Sum_probs=32.0

Q ss_pred             eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCC
Q 003842          640 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK  680 (792)
Q Consensus       640 ~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~  680 (792)
                      ...++.+|.+...+++.+-|.|.++|+.++..++.+++-.+
T Consensus       310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd  350 (415)
T PF14655_consen  310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD  350 (415)
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence            45678899977666665668999999999988888877544

>PLN02153 epithiospecifier protein

Probab=96.24  E-value=0.48  Score=52.11  Aligned_cols=174  Identities=9%  Similarity=-0.016  Sum_probs=80.8

Q ss_pred             CeEEEEEeCC-----CcEEEEEcCCCeeEEEeeC-----C--e-eEEEEecCCCEEEEEEcC-----------CeEEEEE
Q 003842          610 DDLICSCDGD-----GEIRYWSINNGSCTRVFKG-----G--T-AQMRFQPHLGRYLAAAAE-----------NVVSILD  665 (792)
Q Consensus       610 ~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~~-----~--~-~~v~~sp~~~~lla~s~d-----------g~I~i~D  665 (792)
                      +.+++.|+.+     ..+.+||+.+.+....-.-     +  . .......++..++.|+.+           ..|.+||
T Consensus        86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd  165 (341)
T PLN02153         86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN  165 (341)
T ss_pred             CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence            4566677653     3578899887665432110     1  1 111222333444555532           2577889


Q ss_pred             CCCCeEEEEecCC-----CCCeEEEEEcCCCCEEEEEeC--------------CeEEEEECCCCCCcceEEEeec-CCCc
Q 003842          666 AETQACRLSLQGH-----TKPIDSVCWDPSGELLASVSE--------------DSVRVWTVGSGSEGECVHELSC-NGNK  725 (792)
Q Consensus       666 ~~t~~~~~~l~~h-----~~~V~sv~~spdg~~Las~s~--------------d~I~IwDl~s~~~~~~i~~~~~-~~~~  725 (792)
                      .++.+-.. +...     ...-.+++. -++++++.++.              +.|.+||+.+.. ...+..... ....
T Consensus       166 ~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~-W~~~~~~g~~P~~r  242 (341)
T PLN02153        166 IADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK-WTEVETTGAKPSAR  242 (341)
T ss_pred             CCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc-EEeccccCCCCCCc
Confidence            88764332 1111     111112222 34555554431              257888887642 222221100 1111


Q ss_pred             eEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCcEEEEccc------CCC--eEEEEEeCCCCEEEEEe
Q 003842          726 FHSCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTLTAH------EGL--IAALAVSTETGYVASAS  783 (792)
Q Consensus       726 i~si~fspdg~~L~sgs~d--------------g~I~IwDl~~~~~~~~~~h------~~~--V~sl~fspdg~~LaSgs  783 (792)
                      ....+..-+++.++.|+..              +.|+.||..+.....+...      ...  ..++.+.-++++++.||
T Consensus       243 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG  322 (341)
T PLN02153        243 SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG  322 (341)
T ss_pred             ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence            1112223355666676641              2678889887765543211      111  12333444556777777


Q ss_pred             CCC
Q 003842          784 HDK  786 (792)
Q Consensus       784 ~DG  786 (792)
                      .++
T Consensus       323 ~~~  325 (341)
T PLN02153        323 KLP  325 (341)
T ss_pred             cCC
Confidence            643

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.23  E-value=2.9  Score=47.09  Aligned_cols=223  Identities=10%  Similarity=0.131  Sum_probs=120.0

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCce---eEEecccCCCeEEEEEcC---C-CCeEEEEEeCCCcEEEEEcCCC--e-----
Q 003842          566 MPRLATSSFDKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHP---N-KDDLICSCDGDGEIRYWSINNG--S-----  631 (792)
Q Consensus       566 g~~Lasgs~Dg~V~IWdl~s~~~~---i~~~~~h~~~V~sl~fsp---d-~~~ll~sgs~Dg~I~iwdl~~~--~-----  631 (792)
                      ...|++|+..|.++||+....+..   +..-..-..+|..|..-.   . ....| +.-.-..+.+|.+...  .     
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~L-aVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQL-AVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceE-EEecCCEEEEEEEEecCCCcccCc
Confidence            458999999999999998653321   222223456777776532   2 22233 2334567777776321  1     


Q ss_pred             ---eEEEe----eCCeeEEEEecC-----CCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003842          632 ---CTRVF----KGGTAQMRFQPH-----LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE  699 (792)
Q Consensus       632 ---~~~~~----~~~~~~v~~sp~-----~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~  699 (792)
                         ....+    ......+++-+-     ...+++=+.||.+.+|+-+.......+.. ----..++|.+.-+.|++++.
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence               11111    122233333332     24567778899999999887665555543 112234678888888888888


Q ss_pred             C-eEEEEECCCC--------------------CCcceEEEeecCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003842          700 D-SVRVWTVGSG--------------------SEGECVHELSCNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       700 d-~I~IwDl~s~--------------------~~~~~i~~~~~~~~~--i~si~fspdg~~L~sgs~dg~I~IwDl~~~~  756 (792)
                      + .|..|....-                    +....-.++...+..  |..+.++.....|++.+. ..+.+.+.. |.
T Consensus       195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~l~~~-G~  272 (418)
T PF14727_consen  195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGE-RSLFCLKDN-GS  272 (418)
T ss_pred             ceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEec-ceEEEEcCC-Ce
Confidence            7 8888875211                    111122222222211  222333333444555443 466666664 44


Q ss_pred             EEEEcccCCCeEEEE-E----eCCC---CEEEEEeCCCcEEEeC
Q 003842          757 TMTLTAHEGLIAALA-V----STET---GYVASASHDKFVKLWK  792 (792)
Q Consensus       757 ~~~~~~h~~~V~sl~-f----spdg---~~LaSgs~DG~I~IWd  792 (792)
                      .......+....|++ |    ..++   ..++.+++++.+.||+
T Consensus       273 l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~  316 (418)
T PF14727_consen  273 LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE  316 (418)
T ss_pred             EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence            443333333333332 1    1222   2477888999999884

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.21  E-value=1.9  Score=44.82  Aligned_cols=236  Identities=13%  Similarity=0.043  Sum_probs=144.3

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF  593 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~  593 (792)
                      .-..++-++||..-+++...+.|--.|-.+++....--+....-..|..-||+..-++-+.. -|.-.|-++.  .+..|
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~--evt~f  139 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTL--EVTRF  139 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCccc--ceEEe
Confidence            35678888999988888888888888889998887776767777788888988876665544 3444555432  22222


Q ss_pred             c----ccCCCeEEEEEcCCCCeEEEEEeCC---------CcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCe
Q 003842          594 M----GHSASVMSLDFHPNKDDLICSCDGD---------GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV  660 (792)
Q Consensus       594 ~----~h~~~V~sl~fspd~~~ll~sgs~D---------g~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~  660 (792)
                      .    ..........|.+.|. +.+++...         +.|++|+.-.+       .....+|..|++...++.-.++.
T Consensus       140 ~lp~~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfpaPqG-------~gpyGi~atpdGsvwyaslagna  211 (353)
T COG4257         140 PLPLEHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFPAPQG-------GGPYGICATPDGSVWYASLAGNA  211 (353)
T ss_pred             ecccccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeeccCCC-------CCCcceEECCCCcEEEEeccccc
Confidence            2    2345577788888876 44465421         23344433221       24566889999888888888888


Q ss_pred             EEEEECCCCeE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003842          661 VSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       661 I~i~D~~t~~~--~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~  737 (792)
                      |...|..++..  +-.-.......+.+--++-|+..++.... .+..||-....  -.-..+.+....-.++.+...++.
T Consensus       212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grV  289 (353)
T COG4257         212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRV  289 (353)
T ss_pred             eEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcE
Confidence            88888877622  11111112234445556677766664444 67777654321  222334444445566666666655


Q ss_pred             EEEEEcCCeEEEEECCCCcEEEEcc
Q 003842          738 LLVIGCYQSLELWNMSENKTMTLTA  762 (792)
Q Consensus       738 L~sgs~dg~I~IwDl~~~~~~~~~~  762 (792)
                      .++-...|.|.-||-++.....+..
T Consensus       290 W~sea~agai~rfdpeta~ftv~p~  314 (353)
T COG4257         290 WLSEADAGAIGRFDPETARFTVLPI  314 (353)
T ss_pred             EeeccccCceeecCcccceEEEecC
Confidence            4444445667777776665554443

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.15  E-value=2.2  Score=47.24  Aligned_cols=186  Identities=17%  Similarity=0.181  Sum_probs=110.7

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEEC----CCCCe--EEEEe-CC---CcEEEEeCCCCCceeE
Q 003842          522 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS----PSMPR--LATSS-FD---KTVRVWDADNPGYSLR  591 (792)
Q Consensus       522 pdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fs----pdg~~--Lasgs-~D---g~V~IWdl~s~~~~i~  591 (792)
                      |...+|+....++-+.+||++. +.+..+..  +.++.|...    -+++.  |++++ .+   ..|++|.++.....+.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             cccceEEEEeCCCCEEEEcCCC-cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence            3445777778888999999874 45555542  333433321    13432  44443 32   4699998874333344


Q ss_pred             Eecc-------cCCCeEEEEEc--C-CCCeEEEEEeCCCcEEEEEcC---CC----eeEEEeeC--CeeEEEEecCCCEE
Q 003842          592 TFMG-------HSASVMSLDFH--P-NKDDLICSCDGDGEIRYWSIN---NG----SCTRVFKG--GTAQMRFQPHLGRY  652 (792)
Q Consensus       592 ~~~~-------h~~~V~sl~fs--p-d~~~ll~sgs~Dg~I~iwdl~---~~----~~~~~~~~--~~~~v~~sp~~~~l  652 (792)
                      .+..       ....++.+|+.  + ++..+++...++|.+..|.+.   .+    +.++.|..  .+..|......+.|
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L  222 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL  222 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence            4332       12347788874  3 456677788899999888775   23    35666653  45667888888999


Q ss_pred             EEEEcCCeEEEEECCC-----CeEEEEecC--CCCCeEEEEEcC--CCC-EEEEEeCC--eEEEEECCCC
Q 003842          653 LAAAAENVVSILDAET-----QACRLSLQG--HTKPIDSVCWDP--SGE-LLASVSED--SVRVWTVGSG  710 (792)
Q Consensus       653 la~s~dg~I~i~D~~t-----~~~~~~l~~--h~~~V~sv~~sp--dg~-~Las~s~d--~I~IwDl~s~  710 (792)
                      +++-++--|.-|+.+-     +..+....+  ....|-.|++-.  +++ ||++.+.+  +..||+....
T Consensus       223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            9999999999998863     233333322  345677777643  443 67766655  8999998753

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PHA03098 kelch-like protein; Provisional

Probab=96.15  E-value=0.22  Score=58.37  Aligned_cols=149  Identities=9%  Similarity=0.017  Sum_probs=73.2

Q ss_pred             CeEEEEEeCC-----CcEEEEEcCCCeeEEEe--eCCeeE-EEEecCCCEEEEEEcC------CeEEEEECCCCeEEEE-
Q 003842          610 DDLICSCDGD-----GEIRYWSINNGSCTRVF--KGGTAQ-MRFQPHLGRYLAAAAE------NVVSILDAETQACRLS-  674 (792)
Q Consensus       610 ~~ll~sgs~D-----g~I~iwdl~~~~~~~~~--~~~~~~-v~~sp~~~~lla~s~d------g~I~i~D~~t~~~~~~-  674 (792)
                      +.+++.||.+     ..+..||..+.+....-  ..+... .....++..++.|+.+      +.+..||..+.+-... 
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~  422 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS  422 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence            4577777765     34778888776544321  111111 1122333444455521      4688899887643221 


Q ss_pred             -ecCCCCCeEEEEEcCCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003842          675 -LQGHTKPIDSVCWDPSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY  744 (792)
Q Consensus       675 -l~~h~~~V~sv~~spdg~~Las~s~d---------~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d  744 (792)
                       +..... -.+++. .++++++.|+.+         .+.+||..+.. +..+..+.........+.  -+++.+++|+.+
T Consensus       423 ~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~  497 (534)
T PHA03098        423 PLPISHY-GGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNK-WTELSSLNFPRINASLCI--FNNKIYVVGGDK  497 (534)
T ss_pred             CCCcccc-CceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCc-eeeCCCCCcccccceEEE--ECCEEEEEcCCc
Confidence             111111 112222 355666666532         37888887642 122221211111112222  266666666654


Q ss_pred             -----CeEEEEECCCCcEEEEccc
Q 003842          745 -----QSLELWNMSENKTMTLTAH  763 (792)
Q Consensus       745 -----g~I~IwDl~~~~~~~~~~h  763 (792)
                           +.|.+||..+.....+...
T Consensus       498 ~~~~~~~v~~yd~~~~~W~~~~~~  521 (534)
T PHA03098        498 YEYYINEIEVYDDKTNTWTLFCKF  521 (534)
T ss_pred             CCcccceeEEEeCCCCEEEecCCC
Confidence                 4788999888876544443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.14  E-value=0.61  Score=56.59  Aligned_cols=66  Identities=14%  Similarity=0.089  Sum_probs=45.4

Q ss_pred             EEEEEeCCCcEEEEEcCCCeeEEEeeCCee---------------EEEEec--CCCEEEEEEc----------CCeEEEE
Q 003842          612 LICSCDGDGEIRYWSINNGSCTRVFKGGTA---------------QMRFQP--HLGRYLAAAA----------ENVVSIL  664 (792)
Q Consensus       612 ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---------------~v~~sp--~~~~lla~s~----------dg~I~i~  664 (792)
                      .|+.++.|+.|.-.|.++|+.+..|.....               .+.-.|  .++.+++++.          +|.|+-|
T Consensus       262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~  341 (764)
T TIGR03074       262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF  341 (764)
T ss_pred             EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence            455778899999999999998876532100               001111  2356777643          5889999


Q ss_pred             ECCCCeEEEEecC
Q 003842          665 DAETQACRLSLQG  677 (792)
Q Consensus       665 D~~t~~~~~~l~~  677 (792)
                      |.++++.+..+..
T Consensus       342 Da~TGkl~W~~~~  354 (764)
T TIGR03074       342 DVNTGALVWAWDP  354 (764)
T ss_pred             ECCCCcEeeEEec
Confidence            9999999988763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.07  E-value=1.1  Score=53.89  Aligned_cols=95  Identities=12%  Similarity=0.133  Sum_probs=52.5

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE
Q 003842          554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT  633 (792)
Q Consensus       554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~  633 (792)
                      ...|..|.++++|++|+..|..| |.|-.+.........+.+....|.|=.+.-+ ..++ ....               
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-~~~~-~~~~---------------  145 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-ERFF-TSNS---------------  145 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-hhhc-cCCC---------------
Confidence            45688999999999999998877 5555554311111223333333433333222 2222 1110               


Q ss_pred             EEeeCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCC
Q 003842          634 RVFKGGTAQMRFQPH---LGRYLAAAAENVVSILDAETQ  669 (792)
Q Consensus       634 ~~~~~~~~~v~~sp~---~~~lla~s~dg~I~i~D~~t~  669 (792)
                         ...+..+.|+|.   +..+++-++|+.+++||+...
T Consensus       146 ---~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  146 ---SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             ---CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence               112334566665   367777777777777777543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.05  E-value=0.046  Score=65.48  Aligned_cols=73  Identities=25%  Similarity=0.363  Sum_probs=57.8

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEE---ECCCCCeEEEEeCCCcEEEEeCC
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR---FSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~---fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      .-.++|+|++|+.||++++.|-.+|.|.+||+..++..+.+..|..+++.+-   |..++..++++...|.  +|.+.
T Consensus       128 ~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  128 RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            4467899999999999999999999999999999999999887766655443   4445557777777775  55543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.04  E-value=0.014  Score=58.65  Aligned_cols=134  Identities=13%  Similarity=0.045  Sum_probs=77.7

Q ss_pred             EEEeCCCeEEEEECCCCceeEEe-ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEc
Q 003842          528 ATGGHDKKAVLWHTDTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH  606 (792)
Q Consensus       528 asgs~Dg~I~vWdl~t~~~~~~l-~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fs  606 (792)
                      ...+.||.|+-+++...+....- ..|...-..   ..-+..+++|+.+|.|++|...-.+.....+......|.++.-.
T Consensus        34 ~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~  110 (238)
T KOG2444|consen   34 RATSADGLVRERKVRKHKESCRSERFIDEGQRV---VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN  110 (238)
T ss_pred             ccccCCcccccchhhhhhhhhhhhhhhhcceee---cccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence            33456777777776543322111 112222111   22345799999999999999875444333333333444444333


Q ss_pred             CCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003842          607 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ  669 (792)
Q Consensus       607 pd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~  669 (792)
                      -+...+.+++..||.|+.|++.-.+.+.....+..     .++..+++.+.++.|.+|++...
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-----~~~e~~ivv~sd~~i~~a~~S~d  168 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-----ESGEELIVVGSDEFLKIADTSHD  168 (238)
T ss_pred             ccccceeEEeccCCceeeeccccCceeeeeccccC-----CCcceeEEecCCceEEeeccccc
Confidence            33344888999999999999988776654432221     33455666666666666655444

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.89  E-value=0.31  Score=58.97  Aligned_cols=140  Identities=10%  Similarity=0.100  Sum_probs=89.3

Q ss_pred             CeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeE-----Eec------cCCCCEEEEEECCCCC-eEEEEeCCCcEE
Q 003842          514 KVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKT-----NLE------EHSSLITDVRFSPSMP-RLATSSFDKTVR  579 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs--~Dg~I~vWdl~t~~~~~-----~l~------~h~~~V~~i~fspdg~-~Lasgs~Dg~V~  579 (792)
                      .|..+...+|++..++..  .+-.|++||+++.....     -|.      .....+.++.|+|.-. ..+++..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            455666677777655543  33478899987543222     111      2334467888988643 467778899999


Q ss_pred             EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-------eCCeeEEEEecCCCEE
Q 003842          580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------KGGTAQMRFQPHLGRY  652 (792)
Q Consensus       580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-------~~~~~~v~~sp~~~~l  652 (792)
                      |..+......+..+ .....++|++|+|.|..++ .|...|++.-|...-. ..+.+       ...+.+++|.....++
T Consensus       182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~-iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLF-IGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhccc-CcccceeeEEeccccceee-EecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEE
Confidence            98876433333332 3556789999999998766 8888999998876532 22222       2456778887776665


Q ss_pred             EEEE
Q 003842          653 LAAA  656 (792)
Q Consensus       653 la~s  656 (792)
                      ++.+
T Consensus       259 vvy~  262 (1405)
T KOG3630|consen  259 VVYG  262 (1405)
T ss_pred             EEec
Confidence            5543

>PHA03098 kelch-like protein; Provisional

Probab=95.84  E-value=0.26  Score=57.85  Aligned_cols=181  Identities=12%  Similarity=0.085  Sum_probs=86.3

Q ss_pred             CCCCEEEEEeCCC------eEEEEECCCCceeEE--eccCCCCEEEEEECCCCCeEEEEeCC-----CcEEEEeCCCCCc
Q 003842          522 SDGKLLATGGHDK------KAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGY  588 (792)
Q Consensus       522 pdg~~Lasgs~Dg------~I~vWdl~t~~~~~~--l~~h~~~V~~i~fspdg~~Lasgs~D-----g~V~IWdl~s~~~  588 (792)
                      .++.+++.|+.++      .+..||..+.+....  +.........+.+  ++.+++.||.+     ..+.+||..+...
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence            3455667776542      577888776544221  1111222222222  56777888765     3477888876332


Q ss_pred             eeE-EecccCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcCCCeeEEEeeC--Ce-eEEEEecCCCEEEEEEcC
Q 003842          589 SLR-TFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFKG--GT-AQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       589 ~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~D------g~I~iwdl~~~~~~~~~~~--~~-~~v~~sp~~~~lla~s~d  658 (792)
                      ... .+. +...-.+++..  ++.+++.|+.+      ..+..||+.+.+....-..  +. ...+...++..++.|+.+
T Consensus       371 ~~~~~lp-~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  447 (534)
T PHA03098        371 REEPPLI-FPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGIS  447 (534)
T ss_pred             eeCCCcC-cCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCcc
Confidence            111 111 11111122222  34566666632      4588899887765432211  11 111222333444444432


Q ss_pred             --------CeEEEEECCCCeEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCC
Q 003842          659 --------NVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGS  709 (792)
Q Consensus       659 --------g~I~i~D~~t~~~~~~--l~~h~~~V~sv~~spdg~~Las~s~d------~I~IwDl~s  709 (792)
                              ..+.+||.++.+-...  +...... .+++. -++++++.|+.+      .|.+||..+
T Consensus       448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN-ASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             CCCCCcccceEEEecCCCCceeeCCCCCccccc-ceEEE-ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence                    2388899887643321  1111111 12222 256666666543      577777765

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.83  E-value=0.0039  Score=72.63  Aligned_cols=120  Identities=15%  Similarity=0.152  Sum_probs=75.2

Q ss_pred             eeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC--CCceeEE-----eccCCCCEEEEEECC---CCCeEEEEeCC
Q 003842          507 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD--TLKSKTN-----LEEHSSLITDVRFSP---SMPRLATSSFD  575 (792)
Q Consensus       507 ~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~--t~~~~~~-----l~~h~~~V~~i~fsp---dg~~Lasgs~D  575 (792)
                      .+++..+.|..+.|-. +...++  -.-|.+.|||++  .|+....     .......+.-|.|.|   +.-++..+-.+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            3566778888888854 222222  233678899876  3443222     223344455666665   55677778888


Q ss_pred             CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 003842          576 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG  630 (792)
Q Consensus       576 g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~  630 (792)
                      +.|++..++.  .....+.+|...+..++|...|-.++..-+-||++..|-+..|
T Consensus       205 ~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG  257 (1283)
T KOG1916|consen  205 GEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG  257 (1283)
T ss_pred             CceeEeeech--HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence            9999887765  2235566799888888887776555655556666666655444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.76  E-value=1.1  Score=53.94  Aligned_cols=29  Identities=28%  Similarity=0.191  Sum_probs=22.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003842          511 STSKVICCHFSSDGKLLATGGHDKKAVLW  539 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs~Dg~I~vW  539 (792)
                      -.-.|..|.++++|++||..|..|.+.+.
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~  111 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRGVVVLE  111 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCcEEEEE
Confidence            34468999999999999999887655443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.74  E-value=1.4  Score=48.28  Aligned_cols=77  Identities=8%  Similarity=0.018  Sum_probs=43.6

Q ss_pred             EEEEecCCCCCeEEEEEcC-------CCCEEEEEeCC-eEEEEECCCCCCcceEEEee-cCCCceEEEEEeCCCCEEEEE
Q 003842          671 CRLSLQGHTKPIDSVCWDP-------SGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYPSLLVI  741 (792)
Q Consensus       671 ~~~~l~~h~~~V~sv~~sp-------dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~-~~~~~i~si~fspdg~~L~sg  741 (792)
                      ++..+..| ..+..+.|..       .|.+|++.-.. .|....+...........+. .....+..+++.|||.++++.
T Consensus       245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~  323 (331)
T PF07995_consen  245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD  323 (331)
T ss_dssp             -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred             cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence            44445544 4456666653       44566666555 77777776442222223322 334479999999999877777


Q ss_pred             EcCCeEE
Q 003842          742 GCYQSLE  748 (792)
Q Consensus       742 s~dg~I~  748 (792)
                      ..+|.|+
T Consensus       324 d~~G~iy  330 (331)
T PF07995_consen  324 DSDGKIY  330 (331)
T ss_dssp             -TTTTEE
T ss_pred             CCCCeEe
Confidence            7777764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=95.69  E-value=5.9  Score=46.14  Aligned_cols=245  Identities=12%  Similarity=0.118  Sum_probs=119.2

Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCc--eeEEeccC-CCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCC-ceeEEecc
Q 003842          521 SSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEH-SSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPG-YSLRTFMG  595 (792)
Q Consensus       521 spdg~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h-~~~V~~i~fspdg-~~Lasgs~Dg~V~IWdl~s~~-~~i~~~~~  595 (792)
                      ..++..++.+..+|.++...+....  .....-+. ....+++.+..++ .+|+.|+.-|.=.++.+.... ..+..+ .
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~-~  297 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL-P  297 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec-c
Confidence            4567789999999999888776433  11222222 4556677776655 477777765554444444322 223333 3


Q ss_pred             cCCCeEEEEEcCC---CC-------eEEEEEe--CCCcEEEEEcCCCee---EEEee-CCeeEEEEecC----CCEEEEE
Q 003842          596 HSASVMSLDFHPN---KD-------DLICSCD--GDGEIRYWSINNGSC---TRVFK-GGTAQMRFQPH----LGRYLAA  655 (792)
Q Consensus       596 h~~~V~sl~fspd---~~-------~ll~sgs--~Dg~I~iwdl~~~~~---~~~~~-~~~~~v~~sp~----~~~lla~  655 (792)
                      .-++|.++++...   +.       .++++++  .+|.++++.-.-+-.   ..... ..+..+-..+.    +.+++.+
T Consensus       298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S  377 (504)
T PF10433_consen  298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLS  377 (504)
T ss_dssp             ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEE
T ss_pred             CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEE
Confidence            5578888888532   12       4554544  467888874321111   11111 12333222222    2344444


Q ss_pred             EcCCeEEEEEC---CCCeEEEEec--CC---CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeec-CCCce
Q 003842          656 AAENVVSILDA---ETQACRLSLQ--GH---TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC-NGNKF  726 (792)
Q Consensus       656 s~dg~I~i~D~---~t~~~~~~l~--~h---~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~-~~~~i  726 (792)
                      ..+ .-.++.+   +..+.+..+.  +.   ...+.+-.+.  +.+++=.+...|++.+....   +....+.. .+..|
T Consensus       378 ~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~I  451 (504)
T PF10433_consen  378 FPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSII  451 (504)
T ss_dssp             ESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS---
T ss_pred             cCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCeE
Confidence            443 4344444   2333332221  11   1223333332  56677777778889987654   44444332 23334


Q ss_pred             EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc-----ccCCCeEEEEEeC
Q 003842          727 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-----AHEGLIAALAVST  774 (792)
Q Consensus       727 ~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~-----~h~~~V~sl~fsp  774 (792)
                      .++++  .+.+++++..++.+.++.+...... ...     .....|.|+...|
T Consensus       452 ~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  452 VAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             EEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            44444  3457888888889999988877664 211     2467888888765

...

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.66  E-value=0.78  Score=52.30  Aligned_cols=146  Identities=12%  Similarity=0.237  Sum_probs=90.1

Q ss_pred             CCCEEEEEECCCCCeEEEEe--CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCC----CCeEEEEEeCCCcEEEEEc
Q 003842          554 SSLITDVRFSPSMPRLATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSI  627 (792)
Q Consensus       554 ~~~V~~i~fspdg~~Lasgs--~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd----~~~ll~sgs~Dg~I~iwdl  627 (792)
                      -.+|..|+|......++|.-  .+|.+++=|-    ..+    +.-..|..++|.|-    ...|+ +.-....|.+|-+
T Consensus        19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds----~vi----GqFEhV~GlsW~P~~~~~~paLL-AVQHkkhVtVWqL   89 (671)
T PF15390_consen   19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS----KVI----GQFEHVHGLSWAPPCTADTPALL-AVQHKKHVTVWQL   89 (671)
T ss_pred             hccccceEecCCCEEEEEeeeeeCCccccCCc----cEe----eccceeeeeeecCcccCCCCceE-EEeccceEEEEEe
Confidence            35688899984333444442  2333333221    222    33346889999885    33455 4556889999987


Q ss_pred             CC-----CeeEEEeeC--------CeeEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEecCCCCCeEEEEEcCCCC
Q 003842          628 NN-----GSCTRVFKG--------GTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGE  692 (792)
Q Consensus       628 ~~-----~~~~~~~~~--------~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~--~~~~~l~~h~~~V~sv~~spdg~  692 (792)
                      ..     .+.+..-..        -.-.+.|+|....+.+-+....-.+++++..  +....++ ..+.|.|.||..||.
T Consensus        90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~  168 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQ  168 (671)
T ss_pred             ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCC
Confidence            52     222222111        1233679999887777777665556666543  4444453 557899999999999


Q ss_pred             EEEEEeCC--eEEEEECCC
Q 003842          693 LLASVSED--SVRVWTVGS  709 (792)
Q Consensus       693 ~Las~s~d--~I~IwDl~s  709 (792)
                      .|+++-..  .-+|||-..
T Consensus       169 RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  169 RLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEEEEeCCeEEEEEecCch
Confidence            88876665  788998643

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.63  E-value=3.3  Score=43.55  Aligned_cols=108  Identities=12%  Similarity=0.063  Sum_probs=66.8

Q ss_pred             CeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe-CCCCCce
Q 003842          514 KVICCHFSSDGKLLATGG---HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD-ADNPGYS  589 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs---~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd-l~s~~~~  589 (792)
                      .+...++++||+.+|...   ....++++...  .....+. ....++.-.|++++...++...+...+++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999999877765   33345555433  3333322 223788889999987777767666677774 2222222


Q ss_pred             eEEeccc--CCCeEEEEEcCCCCeEEEEEeC--CCcEEE
Q 003842          590 LRTFMGH--SASVMSLDFHPNKDDLICSCDG--DGEIRY  624 (792)
Q Consensus       590 i~~~~~h--~~~V~sl~fspd~~~ll~sgs~--Dg~I~i  624 (792)
                      ...+...  ...|.++.++|||.++++....  ++.|.+
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~v  140 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYV  140 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEE
Confidence            2222211  1289999999999988776633  344444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=95.57  E-value=1.1  Score=48.87  Aligned_cols=100  Identities=10%  Similarity=0.082  Sum_probs=48.8

Q ss_pred             CeEEEEEeCC-----CcEEEEEcCCCeeE---EEee---CCee-EEEEecCCCEEEEEEc-----CCeEEEEECCCCeEE
Q 003842          610 DDLICSCDGD-----GEIRYWSINNGSCT---RVFK---GGTA-QMRFQPHLGRYLAAAA-----ENVVSILDAETQACR  672 (792)
Q Consensus       610 ~~ll~sgs~D-----g~I~iwdl~~~~~~---~~~~---~~~~-~v~~sp~~~~lla~s~-----dg~I~i~D~~t~~~~  672 (792)
                      +.+++.|+.+     ..+..||+.+.+..   ..+.   .... ..+..-++..++.++.     ...+.+||+.+.+-.
T Consensus        73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~  152 (323)
T TIGR03548        73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF  152 (323)
T ss_pred             CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence            4566677654     35777787766531   1111   1111 1112223344444543     246888998876432


Q ss_pred             E--EecCCCCCeEEEEEcCCCCEEEEEeCC-----eEEEEECCCC
Q 003842          673 L--SLQGHTKPIDSVCWDPSGELLASVSED-----SVRVWTVGSG  710 (792)
Q Consensus       673 ~--~l~~h~~~V~sv~~spdg~~Las~s~d-----~I~IwDl~s~  710 (792)
                      .  .+... ......+..-++++++.|+.+     .+.+||..+.
T Consensus       153 ~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       153 ELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             ECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence            2  12111 111222223456666766654     3567888764

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK13684 Ycf48-like protein; Provisional

Probab=95.56  E-value=4.7  Score=44.22  Aligned_cols=147  Identities=10%  Similarity=0.072  Sum_probs=82.8

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE-EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 003842          554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC  632 (792)
Q Consensus       554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~  632 (792)
                      ...+.++.+.+++.+++++ ..|.+.. ..+..+.... ....-...++++.+.+++. ++++ +..|.+++=..+.+..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWML-ARGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEE-ecCCEEEEccCCCCCc
Confidence            5678999999988666555 4554432 2222222222 2223456789999999876 4434 4467665433444432


Q ss_pred             EEEee-------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe---cCCCCCeEEEEEcCCCCEEEEEeCCeE
Q 003842          633 TRVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDPSGELLASVSEDSV  702 (792)
Q Consensus       633 ~~~~~-------~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l---~~h~~~V~sv~~spdg~~Las~s~d~I  702 (792)
                      -....       .....+.+.+++ .+++++.+|.|.. ....++.-...   ..-....+.+.|..+++.+++|..+.|
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i  325 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPG-EIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL  325 (334)
T ss_pred             cccccCCccccccceeeEEEcCCC-CEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence            22111       124556777754 4666667776654 33333322222   122235778888888888888877776


Q ss_pred             EEEE
Q 003842          703 RVWT  706 (792)
Q Consensus       703 ~IwD  706 (792)
                      ..|+
T Consensus       326 l~~~  329 (334)
T PRK13684        326 LRYV  329 (334)
T ss_pred             EEec
Confidence            6665

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.52  E-value=0.098  Score=63.07  Aligned_cols=143  Identities=11%  Similarity=0.021  Sum_probs=93.4

Q ss_pred             CCEEEEEECCCCCeEEEE--eCCCcEEEEeCCCCCce----eE------EecccCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003842          555 SLITDVRFSPSMPRLATS--SFDKTVRVWDADNPGYS----LR------TFMGHSASVMSLDFHPNKDDLICSCDGDGEI  622 (792)
Q Consensus       555 ~~V~~i~fspdg~~Lasg--s~Dg~V~IWdl~s~~~~----i~------~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I  622 (792)
                      -.|..+...+|+...++.  +.+-.|.+||+++-...    .+      +.........++.|+|.-...++.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            345566666776654443  44457899999752111    11      1112234466788988766666778889999


Q ss_pred             EEEEcCCCeeE--E-EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC----CCCCeEEEEEcCCCCEEE
Q 003842          623 RYWSINNGSCT--R-VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG----HTKPIDSVCWDPSGELLA  695 (792)
Q Consensus       623 ~iwdl~~~~~~--~-~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~----h~~~V~sv~~spdg~~La  695 (792)
                      ++..+......  . .+.....+++|+|.|..+++|-..|.+.-|...-. ....+.+    ....|.||+|...-.+++
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEE
Confidence            99877643221  1 23456788999999999999999999998876433 2222221    236799999998888777


Q ss_pred             EEe
Q 003842          696 SVS  698 (792)
Q Consensus       696 s~s  698 (792)
                      +-+
T Consensus       260 vy~  262 (1405)
T KOG3630|consen  260 VYG  262 (1405)
T ss_pred             Eec
Confidence            543

>PLN02153 epithiospecifier protein

Probab=95.49  E-value=2.2  Score=46.85  Aligned_cols=108  Identities=13%  Similarity=0.124  Sum_probs=52.2

Q ss_pred             CCCEEEEEeCC-------CeEEEEECCCCceeEEec--c-CCC---CEEEEEECCCCCeEEEEeCC-----CcEEEEeCC
Q 003842          523 DGKLLATGGHD-------KKAVLWHTDTLKSKTNLE--E-HSS---LITDVRFSPSMPRLATSSFD-----KTVRVWDAD  584 (792)
Q Consensus       523 dg~~Lasgs~D-------g~I~vWdl~t~~~~~~l~--~-h~~---~V~~i~fspdg~~Lasgs~D-----g~V~IWdl~  584 (792)
                      ++++++.|+.+       ..+.+||+.+.+-.....  . ...   ....+.+  ++++++.|+.+     ..|.+||+.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  109 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV  109 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence            34566666653       357888887654322111  0 010   1222333  45677777754     247788887


Q ss_pred             CCCcee-EEecc---cCCC-eEEEEEcCCCCeEEEEEeCC-----------CcEEEEEcCCCeeEE
Q 003842          585 NPGYSL-RTFMG---HSAS-VMSLDFHPNKDDLICSCDGD-----------GEIRYWSINNGSCTR  634 (792)
Q Consensus       585 s~~~~i-~~~~~---h~~~-V~sl~fspd~~~ll~sgs~D-----------g~I~iwdl~~~~~~~  634 (792)
                      +..... ..+..   .... -.+++..  ++.+++.|+.+           ..|.+||+++.+-..
T Consensus       110 t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~  173 (341)
T PLN02153        110 KNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ  173 (341)
T ss_pred             CCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEEECCCCeEee
Confidence            632211 11100   1111 1222222  24566666643           247788988766543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.44  E-value=5.6  Score=44.24  Aligned_cols=186  Identities=10%  Similarity=0.002  Sum_probs=96.6

Q ss_pred             eEEEEeCCCcEEEEeCCCCCceeEEeccc--CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe---eE
Q 003842          568 RLATSSFDKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQ  642 (792)
Q Consensus       568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h--~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~  642 (792)
                      .++++..||.|.-.|.++. ..+......  ...+.+-.+..+|+  |+.++.++.++.+|.++++.+..++...   ..
T Consensus        70 ~v~~~~~~G~i~A~d~~~g-~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~  146 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTG-LVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA  146 (370)
T ss_pred             eEEEecCCCcEEEEeCCCC-cEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence            5556678888888888763 322211111  12233333333554  5578889999999999999888776555   11


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCC---CeEEEEEcCCCCEEEEEeC--C-eEEEEECCCCCCcceE
Q 003842          643 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK---PIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGECV  716 (792)
Q Consensus       643 v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~---~V~sv~~spdg~~Las~s~--d-~I~IwDl~s~~~~~~i  716 (792)
                      -........++..+.++.+...|..+++.+........   .+..--...++. ++.+..  + .+.-+|..++...-..
T Consensus       147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~~~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDGYDGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCCCcceEEEEEccCCcEeeee
Confidence            11122334555555789999999999988776543221   111111112333 333333  3 4555666555221110


Q ss_pred             EE-eecCCC------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          717 HE-LSCNGN------KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       717 ~~-~~~~~~------~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      +. ......      .+..-...-++ .++.++.++.+..+|..+++.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~  273 (370)
T COG1520         226 KVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI  273 (370)
T ss_pred             eeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence            00 000000      01100111122 2466667777888888888877

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=95.41  E-value=3.7  Score=44.00  Aligned_cols=163  Identities=12%  Similarity=0.097  Sum_probs=94.2

Q ss_pred             cEEEEEcCCCeeEEEeeC---------CeeEEEEecCC-----CEEEEEEc-CCeEEEEECCCCeEEEEecCCC------
Q 003842          621 EIRYWSINNGSCTRVFKG---------GTAQMRFQPHL-----GRYLAAAA-ENVVSILDAETQACRLSLQGHT------  679 (792)
Q Consensus       621 ~I~iwdl~~~~~~~~~~~---------~~~~v~~sp~~-----~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~------  679 (792)
                      .|.+||+++++.++.+.-         ....+++....     .+++.+.. .+.|.|||+.+++..+.+..+.      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            678889999888877642         23445665532     23333333 4699999999987666544321      


Q ss_pred             -------------CCeEEEEEcC---CCCEEEEEeCCeEEEEECCCC-----CC------cceEEEeecCCCceEEEEEe
Q 003842          680 -------------KPIDSVCWDP---SGELLASVSEDSVRVWTVGSG-----SE------GECVHELSCNGNKFHSCVFH  732 (792)
Q Consensus       680 -------------~~V~sv~~sp---dg~~Las~s~d~I~IwDl~s~-----~~------~~~i~~~~~~~~~i~si~fs  732 (792)
                                   ..+..++.++   ++++|+...-...++|.+.+.     ..      ...+..+-........++++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D  194 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID  194 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence                         2256666655   667777766554445544321     11      11222222222456778899


Q ss_pred             CCCCEEEEEEcCCeEEEEECCC-----CcEE-EEccc-CCCeEEEEEeC--CCCEEEEEe
Q 003842          733 PTYPSLLVIGCYQSLELWNMSE-----NKTM-TLTAH-EGLIAALAVST--ETGYVASAS  783 (792)
Q Consensus       733 pdg~~L~sgs~dg~I~IwDl~~-----~~~~-~~~~h-~~~V~sl~fsp--dg~~LaSgs  783 (792)
                      ++|..+++--..+.|..|+..+     ...+ ..... -..+.++.+.+  +|.+.+.++
T Consensus       195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred             CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence            9988888888888999999987     2222 22222 35788999998  777666553

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.36  E-value=0.51  Score=47.00  Aligned_cols=176  Identities=14%  Similarity=0.095  Sum_probs=96.5

Q ss_pred             CCCeEEEEeC--CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeE
Q 003842          565 SMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ  642 (792)
Q Consensus       565 dg~~Lasgs~--Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~  642 (792)
                      ++.+|.+.+.  ...|++||++++ ..+....-....+..=-...-++.+..-.-.||.-.++|.++.+++..+.-....
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~g-q~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTG-QEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCc-eEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence            4556666554  346999999974 3333322111222221112223444445567899999999999988877654444


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEECCCCeEEE----EecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce-
Q 003842          643 MRFQPHLGRYLAAAAENVVSILDAETQACRL----SLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC-  715 (792)
Q Consensus       643 v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~----~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~-  715 (792)
                      -....++..++.+.....+..-|.++.....    ++.+ .-..++-+.|- +|.+.|-.-.. .|...|..+++.... 
T Consensus       134 WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~wi  212 (262)
T COG3823         134 WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWI  212 (262)
T ss_pred             eeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence            4555666778888888888888887654332    2222 11223334442 45544443333 455555555421111 


Q ss_pred             --------EEEeecCCCceEEEEEeCCCCEEEEEE
Q 003842          716 --------VHELSCNGNKFHSCVFHPTYPSLLVIG  742 (792)
Q Consensus       716 --------i~~~~~~~~~i~si~fspdg~~L~sgs  742 (792)
                              +..-..+.+....+++.|+...|+..+
T Consensus       213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EccCCchhcCccccccccccceeecCcCCeEEEec
Confidence                    111122345678889999885555544

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.27  E-value=0.79  Score=51.02  Aligned_cols=104  Identities=11%  Similarity=0.037  Sum_probs=60.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCeEEEE-ECCCCC----Ccc-eEEEeecC----CCceEEEEEeCCCCEEEEEEcC-----
Q 003842          680 KPIDSVCWDPSGELLASVSEDSVRVW-TVGSGS----EGE-CVHELSCN----GNKFHSCVFHPTYPSLLVIGCY-----  744 (792)
Q Consensus       680 ~~V~sv~~spdg~~Las~s~d~I~Iw-Dl~s~~----~~~-~i~~~~~~----~~~i~si~fspdg~~L~sgs~d-----  744 (792)
                      ...+.++|.++| +++ ++...|..| |.....    ..+ .+..+...    ......++|.|||.+.++.+..     
T Consensus        72 ~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~  149 (367)
T TIGR02604        72 SMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV  149 (367)
T ss_pred             CCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence            345788998888 444 444455544 443211    112 22223222    3447789999999866655521     


Q ss_pred             --------------CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003842          745 --------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD  785 (792)
Q Consensus       745 --------------g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~D  785 (792)
                                    +.|.-+|..+++...+...-.....++|+++|+++++-..+
T Consensus       150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence                          34666666665544333333446789999999988765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=95.21  E-value=5  Score=47.31  Aligned_cols=152  Identities=13%  Similarity=0.181  Sum_probs=80.7

Q ss_pred             eeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE--EEecC-CCCCeEEEEEcC------CCCEEEEEeC---C--e
Q 003842          636 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR--LSLQG-HTKPIDSVCWDP------SGELLASVSE---D--S  701 (792)
Q Consensus       636 ~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~--~~l~~-h~~~V~sv~~sp------dg~~Las~s~---d--~  701 (792)
                      ++..+..+.+..++..+++...+|.|.+||.......  ..+.. +...|.--+|.+      ...++++.+.   +  .
T Consensus       128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~  207 (670)
T PF10395_consen  128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS  207 (670)
T ss_pred             cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence            4567778899999999999999999999999332211  12221 222111112222      2234444333   2  7


Q ss_pred             EEEEECCCCCCcceEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---EEc---ccC-CCeEEEE
Q 003842          702 VRVWTVGSGSEGECVHELS---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLT---AHE-GLIAALA  771 (792)
Q Consensus       702 I~IwDl~s~~~~~~i~~~~---~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~---~~~---~h~-~~V~sl~  771 (792)
                      .+++.+...  ...+.++.   .+......+.|+-....|+.- .+++|.+|++...+..   .+.   ... ..+.++.
T Consensus       208 ykL~~l~~~--~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~  284 (670)
T PF10395_consen  208 YKLISLSNE--SSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK  284 (670)
T ss_pred             EEEEEeccC--CcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence            888888221  12222222   233334444454444445444 6779999999877654   222   111 2344444


Q ss_pred             EeCCCCEEEEEeCCCcEEEeC
Q 003842          772 VSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       772 fspdg~~LaSgs~DG~I~IWd  792 (792)
                      --...+.|++  .++.|++.|
T Consensus       285 ~~s~nRvLLs--~~nkIyLld  303 (670)
T PF10395_consen  285 PPSPNRVLLS--VNNKIYLLD  303 (670)
T ss_pred             cCCCCeEEEE--cCCEEEEEe
Confidence            2223344443  356777764

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.05  E-value=0.07  Score=40.32  Aligned_cols=33  Identities=21%  Similarity=0.457  Sum_probs=29.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK  545 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~  545 (792)
                      ...|.+++|+|..++||.|+.+|.|.||.+ ++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            456999999999999999999999999998 444

>PLN02193 nitrile-specifier protein

Probab=95.05  E-value=8.8  Score=44.28  Aligned_cols=171  Identities=8%  Similarity=0.001  Sum_probs=81.5

Q ss_pred             CeEEEEEeCC-------CcEEEEEcCCCeeEEEee---CCe---eEEE-EecCCCEEEEEEcC-----CeEEEEECCCCe
Q 003842          610 DDLICSCDGD-------GEIRYWSINNGSCTRVFK---GGT---AQMR-FQPHLGRYLAAAAE-----NVVSILDAETQA  670 (792)
Q Consensus       610 ~~ll~sgs~D-------g~I~iwdl~~~~~~~~~~---~~~---~~v~-~sp~~~~lla~s~d-----g~I~i~D~~t~~  670 (792)
                      +.+++.|+.+       ..+.+||+++.+....-.   .+.   ...+ ...++..++.++.+     +.+.+||+.+.+
T Consensus       176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~  255 (470)
T PLN02193        176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE  255 (470)
T ss_pred             CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence            4566666643       347788888765443211   010   1111 22233344445443     468899988764


Q ss_pred             EEEE--ec--CCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEe---ecCCCceEEEEEeCCCCE
Q 003842          671 CRLS--LQ--GHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHEL---SCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       671 ~~~~--l~--~h~~~V~sv~~spdg~~Las~s~d------~I~IwDl~s~~~~~~i~~~---~~~~~~i~si~fspdg~~  737 (792)
                      -...  +.  .....-.+++. -++++++.|+.+      .+.+||+.+.. ...+...   ...... ..++ .-+++.
T Consensus       256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~R~~-~~~~-~~~gki  331 (470)
T PLN02193        256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK-WFHCSTPGDSFSIRGG-AGLE-VVQGKV  331 (470)
T ss_pred             EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE-EEeCCCCCCCCCCCCC-cEEE-EECCcE
Confidence            3321  11  01111122222 345566665532      46778876531 1111110   000111 1222 235666


Q ss_pred             EEEEEcC----CeEEEEECCCCcEEEEccc-----CCCeEEEEEeCCCCEEEEEeCC
Q 003842          738 LLVIGCY----QSLELWNMSENKTMTLTAH-----EGLIAALAVSTETGYVASASHD  785 (792)
Q Consensus       738 L~sgs~d----g~I~IwDl~~~~~~~~~~h-----~~~V~sl~fspdg~~LaSgs~D  785 (792)
                      +++++.+    ..|.+||+.+.+...+...     .....++ ..-++++++.|+.+
T Consensus       332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~  387 (470)
T PLN02193        332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEI  387 (470)
T ss_pred             EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCcc
Confidence            6777655    4689999998876654322     1111222 23356777777753

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.00  E-value=3.3  Score=41.84  Aligned_cols=49  Identities=10%  Similarity=0.038  Sum_probs=36.4

Q ss_pred             CEEEEEeCCCeEEEEECC--CCceeEEeccCCCCEEEEEECCCCCeEEEEeC
Q 003842          525 KLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSF  574 (792)
Q Consensus       525 ~~Lasgs~Dg~I~vWdl~--t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~  574 (792)
                      +.|+.+...++|.+|++.  ......++..- +.|..+.++..|+||+|--.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~   79 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE   79 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence            355555667889999988  33445555543 78999999999999999743

>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]

Probab=94.96  E-value=0.018  Score=69.95  Aligned_cols=7  Identities=29%  Similarity=0.373  Sum_probs=3.5

Q ss_pred             HhhcCCC
Q 003842          237 AQQNLTS  243 (792)
Q Consensus       237 ~~~~~~~  243 (792)
                      -|.+|.+
T Consensus      2198 lQ~qLs~ 2204 (2220)
T KOG3598|consen 2198 LQMQLSA 2204 (2220)
T ss_pred             HHHHhhh
Confidence            4555544

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.81  E-value=0.01  Score=65.34  Aligned_cols=141  Identities=12%  Similarity=0.181  Sum_probs=102.9

Q ss_pred             CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE
Q 003842          555 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR  634 (792)
Q Consensus       555 ~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~  634 (792)
                      ..-....|.+.+.-++.++.+-.|..||-..  ..+... ...+...+++|..+++.+++.+-..+.+.+||+.+...-.
T Consensus        35 v~pi~~~w~~e~~nlavaca~tiv~~YD~ag--q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq  111 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAG--QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ  111 (615)
T ss_pred             cccceeeEecCCCceehhhhhhHHHhhhhhc--ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH
Confidence            3344557888877799999999999998764  222222 2445567889988888888888899999999998653222


Q ss_pred             EeeCC---eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 003842          635 VFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS  698 (792)
Q Consensus       635 ~~~~~---~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s  698 (792)
                      .-.+.   ..-+.|++....++.+...|.+.||...+.+.+.....|...+++++|.+.+..+..++
T Consensus       112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dc  178 (615)
T KOG2247|consen  112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDC  178 (615)
T ss_pred             HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCc
Confidence            11111   12267888888888888899999999988877776666899999999998776554433

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.75  E-value=3.6  Score=48.33  Aligned_cols=191  Identities=13%  Similarity=0.079  Sum_probs=91.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR  591 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~  591 (792)
                      .+.+.++..+|....=+. +.--.|+||++. |..+..+......+-.+.|+.+. .|++...||+|+||++-.  ..+.
T Consensus        43 ~gGpIAV~r~p~~~~~~~-~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g--e~ie  117 (829)
T KOG2280|consen   43 FGGPIAVTRSPSKLVPLY-SARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG--EFIE  117 (829)
T ss_pred             cCCceEEEeccccccccc-ccceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch--hhhc
Confidence            344555555553211111 233457888764 45555544444478899999765 677788999999999974  2222


Q ss_pred             Ee----cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC------CeeEEE-EecCCC-EEEEEEc-C
Q 003842          592 TF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------GTAQMR-FQPHLG-RYLAAAA-E  658 (792)
Q Consensus       592 ~~----~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~------~~~~v~-~sp~~~-~lla~s~-d  658 (792)
                      .+    ......|..+.|..+|  ++ .-..+|.|.+.+-......+.++.      ...+-. +.+... .++..-. .
T Consensus       118 ~~svg~e~~~~~I~ec~~f~~G--Va-vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~  194 (829)
T KOG2280|consen  118 SNSVGFESQMSDIVECRFFHNG--VA-VLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVA  194 (829)
T ss_pred             ccccccccccCceeEEEEecCc--eE-EEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechh
Confidence            21    1222345555554444  22 223355554433222222222221      111211 112111 1111111 0


Q ss_pred             CeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003842          659 NVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG  710 (792)
Q Consensus       659 g~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~  710 (792)
                      -...++-.+.. .....+......+..+..+|+.++|+.-... .|.+-++...
T Consensus       195 v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~  248 (829)
T KOG2280|consen  195 VGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS  248 (829)
T ss_pred             hhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence            00111111111 1111122223457778899999999887766 7777766543

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=94.66  E-value=1.5  Score=49.92  Aligned_cols=264  Identities=14%  Similarity=0.092  Sum_probs=124.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC-CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL  590 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~-~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i  590 (792)
                      ..+|..+.|+..| .|.+|+.|| +..||..+++.+..-.... ..|..+..+..+ .|.+|+++| |++.+.+.  ..+
T Consensus       164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G--~~~  237 (671)
T COG3292         164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEG--WRA  237 (671)
T ss_pred             CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhh--ccc
Confidence            4568888888888 566677776 5667877777665544333 556666555444 677888888 77777764  111


Q ss_pred             EEe--cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--Ce---eEEEEecCCCEEEEEEcCCeEEE
Q 003842          591 RTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GT---AQMRFQPHLGRYLAAAAENVVSI  663 (792)
Q Consensus       591 ~~~--~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~---~~v~~sp~~~~lla~s~dg~I~i  663 (792)
                      ...  .-....|..+.-...|.  +..|+..|..+.---+.+-.+...+.  ..   ..+ +....+.+.+++.++.+++
T Consensus       238 sn~~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL-~~D~dGsLWv~t~~giv~~  314 (671)
T COG3292         238 SNWGPMLPSGNILLLVQDAQGE--LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSL-WLDTDGSLWVGTYGGIVRY  314 (671)
T ss_pred             cccCCCCcchheeeeecccCCC--EEEeecccceeEecCCCCccccccccCCccccccce-eeccCCCEeeeccCceEEE
Confidence            111  11233344444333333  33455454433222221111111111  11   112 2233356667777776666


Q ss_pred             EECCCCeEEEEecCCCCC-eEEEEEcC---CCCEEEEEeCCeEEEEECCCCCCcceEEEe-ecCCCceEEEEEeCCCCEE
Q 003842          664 LDAETQACRLSLQGHTKP-IDSVCWDP---SGELLASVSEDSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSL  738 (792)
Q Consensus       664 ~D~~t~~~~~~l~~h~~~-V~sv~~sp---dg~~Las~s~d~I~IwDl~s~~~~~~i~~~-~~~~~~i~si~fspdg~~L  738 (792)
                      -+.+- .....+...++. +-.++..|   +.......+.+.+.+-+-.++   ..++.. ......|+..++..++ .+
T Consensus       315 ~~a~w-~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG---~~v~sv~q~Rg~nit~~~~d~~g-~l  389 (671)
T COG3292         315 LTADW-KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTG---ELVRSVHQLRGMNITTTLEDSRG-RL  389 (671)
T ss_pred             ecchh-hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCC---cEEEEeeeccccccchhhhccCC-cE
Confidence            54431 111111111110 11111111   000111111111122222222   222211 1122345556666644 46


Q ss_pred             EEEEcCCeEEEEECCC-CcEEEEc--ccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003842          739 LVIGCYQSLELWNMSE-NKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVKL  790 (792)
Q Consensus       739 ~sgs~dg~I~IwDl~~-~~~~~~~--~h~~~V~sl~fspdg~~LaSgs~DG~I~I  790 (792)
                      ..++..+-+..|+..+ +..+...  ...+.|..+.=.|+++ |..|+.+|.+++
T Consensus       390 Wlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~  443 (671)
T COG3292         390 WLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR  443 (671)
T ss_pred             EEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence            6666665666677666 3333222  2356788888888888 666778887753

>PHA02790 Kelch-like protein; Provisional

Probab=94.55  E-value=0.98  Score=52.24  Aligned_cols=177  Identities=7%  Similarity=-0.032  Sum_probs=82.8

Q ss_pred             CCCEEEEEeCCC-----eEEEEECCCCceeE--EeccCCCCEEEEEECCCCCeEEEEeCC--CcEEEEeCCCCCceeEEe
Q 003842          523 DGKLLATGGHDK-----KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYSLRTF  593 (792)
Q Consensus       523 dg~~Lasgs~Dg-----~I~vWdl~t~~~~~--~l~~h~~~V~~i~fspdg~~Lasgs~D--g~V~IWdl~s~~~~i~~~  593 (792)
                      ++.++++||.++     .+..||..+.+...  .+.........+.  -++.+.++|+.+  ..+..||..++..  ...
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W--~~~  346 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW--VNM  346 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeE--EEC
Confidence            344566676542     46678877654322  2221111122222  367777788764  3578888765322  121


Q ss_pred             cccCCCe--EEEEEcCCCCeEEEEEeCCC---cEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003842          594 MGHSASV--MSLDFHPNKDDLICSCDGDG---EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDA  666 (792)
Q Consensus       594 ~~h~~~V--~sl~fspd~~~ll~sgs~Dg---~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~  666 (792)
                      ..-....  .+++..  ++.+.+.|+.++   .+..||.++......-.  .+....+...-++.|++.+  |.+.+||.
T Consensus       347 ~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp  422 (480)
T PHA02790        347 PSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCE  422 (480)
T ss_pred             CCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecC
Confidence            1111111  122222  345666777553   47788888766543211  1111111222334555544  45778888


Q ss_pred             CCCeEEE--EecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCC
Q 003842          667 ETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGS  709 (792)
Q Consensus       667 ~t~~~~~--~l~~h~~~V~sv~~spdg~~Las~s~d------~I~IwDl~s  709 (792)
                      ++.+-..  .+....... +++. -+|++.+.|+.+      .|.+||..+
T Consensus       423 ~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        423 SSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             CCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence            7654322  221111112 2222 356666666532      355555543

>PLN02193 nitrile-specifier protein

Probab=94.54  E-value=3.8  Score=47.29  Aligned_cols=148  Identities=6%  Similarity=-0.069  Sum_probs=72.4

Q ss_pred             CeEEEEEeCC-----CcEEEEEcCCCeeEEEeeC-----Cee-EEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEE
Q 003842          610 DDLICSCDGD-----GEIRYWSINNGSCTRVFKG-----GTA-QMRFQPHLGRYLAAAAE-----NVVSILDAETQACRL  673 (792)
Q Consensus       610 ~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~~-----~~~-~v~~sp~~~~lla~s~d-----g~I~i~D~~t~~~~~  673 (792)
                      +.+++.|+.+     ..+.+||+.+.+....-..     +.. ......++..++.++.+     ..+.+||+.+.+-..
T Consensus       229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~  308 (470)
T PLN02193        229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH  308 (470)
T ss_pred             CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEe
Confidence            4566677654     3588899988765443211     111 11122233444455443     357788887764322


Q ss_pred             Eec-----CCCCCeEEEEEcCCCCEEEEEeC-----CeEEEEECCCCCCcceEEEee-cCCCceEEEEEeCCCCEEEEEE
Q 003842          674 SLQ-----GHTKPIDSVCWDPSGELLASVSE-----DSVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYPSLLVIG  742 (792)
Q Consensus       674 ~l~-----~h~~~V~sv~~spdg~~Las~s~-----d~I~IwDl~s~~~~~~i~~~~-~~~~~i~si~fspdg~~L~sgs  742 (792)
                      .-.     ..... .+++. -++++++.++.     +.+.+||+.+.. ...+.... .........+..-+++.+++|+
T Consensus       309 ~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG  385 (470)
T PLN02193        309 CSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASAAVGKHIVIFGG  385 (470)
T ss_pred             CCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEEEECCEEEEECC
Confidence            110     00111 12222 25666665553     258899987642 22222110 0111111222233556666776


Q ss_pred             cC--------------CeEEEEECCCCcEEEE
Q 003842          743 CY--------------QSLELWNMSENKTMTL  760 (792)
Q Consensus       743 ~d--------------g~I~IwDl~~~~~~~~  760 (792)
                      ..              ..+.+||+.+.....+
T Consensus       386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~  417 (470)
T PLN02193        386 EIAMDPLAHVGPGQLTDGTFALDTETLQWERL  417 (470)
T ss_pred             ccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence            42              2588999988876543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.46  E-value=1.3  Score=44.70  Aligned_cols=136  Identities=18%  Similarity=0.219  Sum_probs=78.2

Q ss_pred             CEEEEEEcCCeEEEEECCC--CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------eEEE---EECCCC-CCcceE
Q 003842          650 GRYLAAAAENVVSILDAET--QACRLSLQGHTKPIDSVCWDPSGELLASVSED-------SVRV---WTVGSG-SEGECV  716 (792)
Q Consensus       650 ~~lla~s~dg~I~i~D~~t--~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-------~I~I---wDl~s~-~~~~~i  716 (792)
                      +.++++.....|.+|++..  ...+.+|.. -+.|..+.++..|+||++--++       .+|+   |+.... +....+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            5666768888999999883  355666653 4789999999999999986543       3444   444311 111111


Q ss_pred             EEeec---------------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-------EEE----cc-c
Q 003842          717 HELSC---------------------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-------MTL----TA-H  763 (792)
Q Consensus       717 ~~~~~---------------------~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~-------~~~----~~-h  763 (792)
                       .+.+                     -...+.+++..|-...|++|+. +++.+|.+.....       +.+    .. |
T Consensus       108 -RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~  185 (215)
T PF14761_consen  108 -RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHI  185 (215)
T ss_pred             -EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhhee
Confidence             1111                     1234556666675555666654 5788887654332       111    11 2


Q ss_pred             CC-CeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          764 EG-LIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       764 ~~-~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      .+ .+..++|.  +.|||..++ -.++++
T Consensus       186 ~~~~p~~v~ic--~~yiA~~s~-~ev~Vl  211 (215)
T PF14761_consen  186 DNFKPTQVAIC--EGYIAVMSD-LEVLVL  211 (215)
T ss_pred             cCceEEEEEEE--eeEEEEecC-CEEEEE
Confidence            22 24455554  568887764 456554

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=94.37  E-value=4.9  Score=44.18  Aligned_cols=41  Identities=15%  Similarity=0.137  Sum_probs=23.1

Q ss_pred             eEEEEECCCCcEEEEcccCCC-eEEEEEeCCCCEEEEEeCCC
Q 003842          746 SLELWNMSENKTMTLTAHEGL-IAALAVSTETGYVASASHDK  786 (792)
Q Consensus       746 ~I~IwDl~~~~~~~~~~h~~~-V~sl~fspdg~~LaSgs~DG  786 (792)
                      .+.+||.++.+...+...... -...+..-++++++.|+.+.
T Consensus       291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~  332 (346)
T TIGR03547       291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS  332 (346)
T ss_pred             EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence            467888887664433222211 12223345788888888753

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=94.36  E-value=4.9  Score=44.84  Aligned_cols=14  Identities=7%  Similarity=0.145  Sum_probs=10.2

Q ss_pred             cEEEEEcCCCeeEE
Q 003842          621 EIRYWSINNGSCTR  634 (792)
Q Consensus       621 ~I~iwdl~~~~~~~  634 (792)
                      .|.+||..+.+...
T Consensus       190 ~v~~YD~~t~~W~~  203 (376)
T PRK14131        190 EVLSYDPSTNQWKN  203 (376)
T ss_pred             eEEEEECCCCeeeE
Confidence            58889988776544

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.34  E-value=1  Score=50.41  Aligned_cols=140  Identities=10%  Similarity=0.083  Sum_probs=93.6

Q ss_pred             CCCeE-EEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCC-------eEEEEEeCCCcEEEEEcCCCe-eEE-
Q 003842          565 SMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-------DLICSCDGDGEIRYWSINNGS-CTR-  634 (792)
Q Consensus       565 dg~~L-asgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~-------~ll~sgs~Dg~I~iwdl~~~~-~~~-  634 (792)
                      +..+| ..|+....++-.|++. ++.+..+.-|...  -+.|.|+.+       .-| +|-.+..|.-.|.+-.. .+. 
T Consensus       478 dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             CcceEEecCCCcccceeeeccc-ceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence            34443 3455556677778876 7778888777665  466776532       123 45557777777765432 222 


Q ss_pred             -EeeCCee----EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 003842          635 -VFKGGTA----QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG  708 (792)
Q Consensus       635 -~~~~~~~----~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~  708 (792)
                       .++....    +.......+++++++..|.|++||--.-+....+.+....|..|..+.+|++|++.+...+.+.|++
T Consensus       554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence             2222222    2223445689999999999999997665555556667788999999999999999998888888875

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=94.29  E-value=9.4  Score=41.24  Aligned_cols=231  Identities=13%  Similarity=0.019  Sum_probs=110.3

Q ss_pred             CCCEEEEEeCCCeEEEEECCC--CceeEEeccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCc-----------
Q 003842          523 DGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGY-----------  588 (792)
Q Consensus       523 dg~~Lasgs~Dg~I~vWdl~t--~~~~~~l~~h~~~V~~i~fspdg~~Lasgs-~Dg~V~IWdl~s~~~-----------  588 (792)
                      ++++|+.|+++|...+. +..  .+..+.+  +...|+++...+..+.|++-+ ....+++|++..-..           
T Consensus        12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~   88 (302)
T smart00036       12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV   88 (302)
T ss_pred             CCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence            44689999999865554 554  2333333  466899999998777665554 344599999843110           


Q ss_pred             ---eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC----eeEEEe---e---C-CeeEEEEecC--CCEE
Q 003842          589 ---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVF---K---G-GTAQMRFQPH--LGRY  652 (792)
Q Consensus       589 ---~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~---~---~-~~~~v~~sp~--~~~l  652 (792)
                         .......+......+++......+++++.....|.++.+...    ...+.+   .   . ....+..++.  ...+
T Consensus        89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (302)
T smart00036       89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI  168 (302)
T ss_pred             ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence               011122333333333333222223334444566666544322    112211   0   1 1112222222  3566


Q ss_pred             EEEEcCCeEEEEECCC--CeE-----EEEecCCC-CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCC
Q 003842          653 LAAAAENVVSILDAET--QAC-----RLSLQGHT-KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGN  724 (792)
Q Consensus       653 la~s~dg~I~i~D~~t--~~~-----~~~l~~h~-~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~  724 (792)
                      ++|+..+...++++..  ...     -+...... .++ ++...+++.+| .+.++...+.|...... .....+. -..
T Consensus       169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~-~i~~l~~~e~L-lc~~~~~v~Vn~~G~~~-~r~~~l~-w~~  244 (302)
T smart00036      169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPI-SVVQVPRDEFL-LCYDEFGVFVNLYGKRR-SRNPILH-WEF  244 (302)
T ss_pred             EEEEcCCCCeEEEEeecccccccccccccccccccCce-EEEEECCCeEE-EEECcEEEEEeCCCCcc-ccceEEE-cCC
Confidence            7776653344444422  110     00011111 333 33333445444 45555444445432111 1111111 123


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEccc
Q 003842          725 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH  763 (792)
Q Consensus       725 ~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h  763 (792)
                      ...++++.  ..+|++... ..|.|+++.+++.+....+
T Consensus       245 ~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~~  280 (302)
T smart00036      245 MPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELAD  280 (302)
T ss_pred             cccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEec
Confidence            44566666  366777654 5699999999987744433

Unpublished observations.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.26  E-value=0.022  Score=66.72  Aligned_cols=118  Identities=19%  Similarity=0.248  Sum_probs=74.1

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEE-----------ECCCCCeEEEEeCCCcEEEEeC
Q 003842          515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR-----------FSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~-----------fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      |..+-|-++.-++..+-.++.|++.++++... ..+.+|...+++++           .+|||+.|++++.||.|++|-+
T Consensus       186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            44444445667888888889999887765433 44555777666654           4889999999999999999876


Q ss_pred             CCCC----ceeEEecccCC-CeEEEEEcCCC---------CeEEEEEeCCCcEEEEEcCCCeeE
Q 003842          584 DNPG----YSLRTFMGHSA-SVMSLDFHPNK---------DDLICSCDGDGEIRYWSINNGSCT  633 (792)
Q Consensus       584 ~s~~----~~i~~~~~h~~-~V~sl~fspd~---------~~ll~sgs~Dg~I~iwdl~~~~~~  633 (792)
                      .-.+    .++..++.|.+ +-.|.-|+...         ..+|-+...+..+++|.....+|.
T Consensus       265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            5322    33445555652 22222232211         123333444677899988877776

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=94.20  E-value=5.4  Score=49.50  Aligned_cols=29  Identities=17%  Similarity=0.174  Sum_probs=17.2

Q ss_pred             cceEEEEeCCCeeeecCCC--eeEeCCCcch
Q 003842          430 KPLMMFGTDGAGTLTSPSN--QLWDDKDLEL  458 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~--~lWD~~tg~~  458 (792)
                      +-.+..+|-...++.+...  +||.++..+.
T Consensus       409 ~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~  439 (1899)
T KOG4659|consen  409 SYYIAVSPVDGTLYVSDPLSKQVWRVSSLEP  439 (1899)
T ss_pred             eeEEEecCcCceEEecCCCcceEEEeccCCc
Confidence            4456677754445554444  8888776554

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.14  E-value=9.5  Score=41.69  Aligned_cols=141  Identities=13%  Similarity=0.257  Sum_probs=79.3

Q ss_pred             CCeEEEEEcCCCCeEEEEEeCCCc------EEEEEcCCC----eeEEE-----ee---C--------CeeEEEEecCCCE
Q 003842          598 ASVMSLDFHPNKDDLICSCDGDGE------IRYWSINNG----SCTRV-----FK---G--------GTAQMRFQPHLGR  651 (792)
Q Consensus       598 ~~V~sl~fspd~~~ll~sgs~Dg~------I~iwdl~~~----~~~~~-----~~---~--------~~~~v~~sp~~~~  651 (792)
                      +.+..|.+.+++..++ +.+.+|.      ++.+++...    ..+..     +.   +        ....+++.+++..
T Consensus        20 GGlSgl~~~~~~~~~~-avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFY-AVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             CcEeeEEEeCCCCEEE-EEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            5577888886555444 4555666      655555431    00110     11   1        2345777555555


Q ss_pred             EEEEEcC------CeEEEEECCCCeEEEEec---------------CCCCCeEEEEEcCCCCEEEEEeCC--------e-
Q 003842          652 YLAAAAE------NVVSILDAETQACRLSLQ---------------GHTKPIDSVCWDPSGELLASVSED--------S-  701 (792)
Q Consensus       652 lla~s~d------g~I~i~D~~t~~~~~~l~---------------~h~~~V~sv~~spdg~~Las~s~d--------~-  701 (792)
                      +++.-.+      ..|+.+|.. ++.+..+.               ..+..+.+|+++|+|+.|+++.+.        . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            5544446      688888876 54443331               133458899999999966655321        1 


Q ss_pred             ------EEEEECCCCC----CcceEEEeec-----CCCceEEEEEeCCCCEEEE
Q 003842          702 ------VRVWTVGSGS----EGECVHELSC-----NGNKFHSCVFHPTYPSLLV  740 (792)
Q Consensus       702 ------I~IwDl~s~~----~~~~i~~~~~-----~~~~i~si~fspdg~~L~s  740 (792)
                            ++|+.+....    .......+..     ....+..+++-+++++|+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                  5555444321    1122333332     4577899999999986554

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.09  E-value=2.6  Score=42.18  Aligned_cols=170  Identities=13%  Similarity=0.151  Sum_probs=89.5

Q ss_pred             CCCEEEEEeC--CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEE-EeCCCcEEEEeCCCCCceeEEecccCCC
Q 003842          523 DGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKTVRVWDADNPGYSLRTFMGHSAS  599 (792)
Q Consensus       523 dg~~Lasgs~--Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Las-gs~Dg~V~IWdl~s~~~~i~~~~~h~~~  599 (792)
                      +|.++.+.+.  ...|++||+.+++.+..-.-....+..=-...-+.++.. .=.||.-.+||.++ -+++..+. ..+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-~~~lg~~~-y~Ge  132 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-LEELGRFS-YEGE  132 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHH-hhhhcccc-cCCc
Confidence            4556666553  347999999999877654422111111111111233332 33577788898886 44444433 3344


Q ss_pred             eEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----C----CeeEEEEecCCCEEEE-EEcCCeEEEEECCCCe
Q 003842          600 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----G----GTAQMRFQPHLGRYLA-AAAENVVSILDAETQA  670 (792)
Q Consensus       600 V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~----~~~~v~~sp~~~~lla-~s~dg~I~i~D~~t~~  670 (792)
                      =+.++.  |+..++ .++...++++-|.++......+.    +    ..+.+.|- + +.+++ .-.+..|...|..+++
T Consensus       133 GWgLt~--d~~~Li-msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-d-G~lyANVw~t~~I~rI~p~sGr  207 (262)
T COG3823         133 GWGLTS--DDKNLI-MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-D-GELYANVWQTTRIARIDPDSGR  207 (262)
T ss_pred             ceeeec--CCcceE-eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-c-cEEEEeeeeecceEEEcCCCCc
Confidence            455554  445555 55555677777766554333321    1    11112221 2 23332 2335566667777777


Q ss_pred             EEEEec------------CCCCCeEEEEEcCCCCEEEEEeC
Q 003842          671 CRLSLQ------------GHTKPIDSVCWDPSGELLASVSE  699 (792)
Q Consensus       671 ~~~~l~------------~h~~~V~sv~~spdg~~Las~s~  699 (792)
                      ++..+.            .|..-.+.|++.|++..|+..+.
T Consensus       208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             EEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence            666543            23445778999998865554443

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=93.70  E-value=17  Score=42.21  Aligned_cols=224  Identities=15%  Similarity=0.162  Sum_probs=109.2

Q ss_pred             CCCCCeEEEEeCCCcEEEEeCCCCCc-eeEEeccc-CCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeEEEee-
Q 003842          563 SPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGH-SASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFK-  637 (792)
Q Consensus       563 spdg~~Lasgs~Dg~V~IWdl~s~~~-~i~~~~~h-~~~V~sl~fspd~~~ll~sgs~--Dg~I~iwdl~~~~~~~~~~-  637 (792)
                      ..++..++.+..+|.++...+...+. ......+. .....++++..++..+++.|+.  |+.+..|....-+++..+. 
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N  298 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN  298 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence            44677899999999999888876332 12222222 4556678887766445556665  5556666644445555554 


Q ss_pred             -CCeeEEEEecC----CC------EEEEEEc---CCeEEEEECCCCeE--EEEecCC--CCCeEEEEEcC-CCCEEEEEe
Q 003842          638 -GGTAQMRFQPH----LG------RYLAAAA---ENVVSILDAETQAC--RLSLQGH--TKPIDSVCWDP-SGELLASVS  698 (792)
Q Consensus       638 -~~~~~v~~sp~----~~------~lla~s~---dg~I~i~D~~t~~~--~~~l~~h--~~~V~sv~~sp-dg~~Las~s  698 (792)
                       +++..+++...    ..      .+++++.   +|.++++.---+-.  .......  ...++.+.... ++.||+...
T Consensus       299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~  378 (504)
T PF10433_consen  299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF  378 (504)
T ss_dssp             --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred             cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence             46666666422    22      6777765   67888774321111  1111111  22344443322 256888888


Q ss_pred             CCeEEEEECCCCCCcceEEE-----eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEE--cccCCCeEEEE
Q 003842          699 EDSVRVWTVGSGSEGECVHE-----LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL--TAHEGLIAALA  771 (792)
Q Consensus       699 ~d~I~IwDl~s~~~~~~i~~-----~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~--~~h~~~V~sl~  771 (792)
                      .+.-+++.+..++....+..     +......+.+..+.  +..++=... ..|++.+....+....  ......|.+.+
T Consensus       379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~  455 (504)
T PF10433_consen  379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAAS  455 (504)
T ss_dssp             SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred             CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence            77555666531111122211     11112223332332  344444444 3588888877766632  23444555555


Q ss_pred             EeCCCCEEEEEeCCCcEEEe
Q 003842          772 VSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       772 fspdg~~LaSgs~DG~I~IW  791 (792)
                      +.  +.+++.+-.++.+.++
T Consensus       456 ~~--~~~v~v~~~~~~~~~~  473 (504)
T PF10433_consen  456 IN--DPQVLVALSGGELVYF  473 (504)
T ss_dssp             ES--SSEEEEEE-TTEEEEE
T ss_pred             EC--CCEEEEEEeCCcEEEE
Confidence            53  3455555556666554

...

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.69  E-value=1.9  Score=48.28  Aligned_cols=128  Identities=14%  Similarity=0.168  Sum_probs=78.1

Q ss_pred             cceeccCCcceeeeeeeecCCCCeEEEEEcCCCCE-------EEEEeCCCeEEEEECC-CCceeEEeccCCCCEEEEEEC
Q 003842          492 RGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKL-------LATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFS  563 (792)
Q Consensus       492 ~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~-------Lasgs~Dg~I~vWdl~-t~~~~~~l~~h~~~V~~i~fs  563 (792)
                      -.+|+..|.   .+..+..|.+.  -+.|.|+.++       -++|-.+..|.-.|.. .+..+.. ......++.-.|+
T Consensus       493 ykmDIErGk---vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v-~esKdY~tKn~Fs  566 (776)
T COG5167         493 YKMDIERGK---VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV-VESKDYKTKNKFS  566 (776)
T ss_pred             eeeecccce---eeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee-eeehhcccccccc
Confidence            345555553   33444455554  5667775431       2344455555555543 2322222 1122223333333


Q ss_pred             C----CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 003842          564 P----SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN  628 (792)
Q Consensus       564 p----dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~  628 (792)
                      .    ...+||+|+..|.|++||--. ......+.+....|..|....+|+++||+|  ..+|.+-|++
T Consensus       567 s~~tTesGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~  632 (776)
T COG5167         567 SGMTTESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP  632 (776)
T ss_pred             ccccccCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence            3    334999999999999999764 344455667778899999999999999888  5678887765

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=93.66  E-value=17  Score=41.99  Aligned_cols=140  Identities=14%  Similarity=0.083  Sum_probs=69.9

Q ss_pred             CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCC---eEEEEEcCCC
Q 003842          533 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS---VMSLDFHPNK  609 (792)
Q Consensus       533 Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~---V~sl~fspd~  609 (792)
                      .+.+.++|.+ |..+..+.........+.+.++|.+++...  ..++.+|+.  ++.+..+.-....   =.++.+.|+|
T Consensus       127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~--G~v~~~~~l~~~~~~~HHD~~~l~nG  201 (477)
T PF05935_consen  127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL--GKVIWEYDLPGGYYDFHHDIDELPNG  201 (477)
T ss_dssp             EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred             CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC--CCEEEeeecCCcccccccccEECCCC
Confidence            3445555533 334433332211111166778887776655  678888886  3444443322211   2356677887


Q ss_pred             CeEEEEEe-------C-----CCcEEEEEcCCCeeEEEee------------------------------CCeeEEEEec
Q 003842          610 DDLICSCD-------G-----DGEIRYWSINNGSCTRVFK------------------------------GGTAQMRFQP  647 (792)
Q Consensus       610 ~~ll~sgs-------~-----Dg~I~iwdl~~~~~~~~~~------------------------------~~~~~v~~sp  647 (792)
                      +.|+++..       .     +-.|..+| .+|+.+..+.                              .++.++.+.+
T Consensus       202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~  280 (477)
T PF05935_consen  202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP  280 (477)
T ss_dssp             -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred             CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence            76665541       1     12355555 5555554321                              1456788889


Q ss_pred             CCCEEEEEEcC-CeEEEEECCCCeEEEEecCC
Q 003842          648 HLGRYLAAAAE-NVVSILDAETQACRLSLQGH  678 (792)
Q Consensus       648 ~~~~lla~s~d-g~I~i~D~~t~~~~~~l~~h  678 (792)
                      ..+.|++.+.. ..|..+|.++++....+..+
T Consensus       281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             TTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             CCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence            77888888875 49999999999888877654

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=93.62  E-value=6.6  Score=43.84  Aligned_cols=39  Identities=18%  Similarity=0.228  Sum_probs=20.2

Q ss_pred             EEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEeCC
Q 003842          747 LELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHD  785 (792)
Q Consensus       747 I~IwDl~~~~~~~~~~h~-~~V~sl~fspdg~~LaSgs~D  785 (792)
                      +.+||..+++...+..-. ..-...+..-+++++++||..
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence            567888876644222111 111122334467788888753

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=93.51  E-value=18  Score=42.50  Aligned_cols=197  Identities=12%  Similarity=0.078  Sum_probs=106.3

Q ss_pred             EEEEEECCCCCeEEEEe-----CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc----EEEEEc
Q 003842          557 ITDVRFSPSMPRLATSS-----FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE----IRYWSI  627 (792)
Q Consensus       557 V~~i~fspdg~~Lasgs-----~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~----I~iwdl  627 (792)
                      +-.++.+||.+++|-+-     ..=+++|.|+.++......+.   +...+++|.+|+..++++...++.    |....+
T Consensus       131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~  207 (682)
T COG1770         131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRL  207 (682)
T ss_pred             eeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEec
Confidence            55677888988877653     233688999988544433333   345688999999999988776652    333333


Q ss_pred             CC--CeeEEEee--CCe--eEEEEecCCCEEEEEEc---CCeEEEEECCCCeEE--EEecCCCCCeEEEEEcCCCCEEEE
Q 003842          628 NN--GSCTRVFK--GGT--AQMRFQPHLGRYLAAAA---ENVVSILDAETQACR--LSLQGHTKPIDSVCWDPSGELLAS  696 (792)
Q Consensus       628 ~~--~~~~~~~~--~~~--~~v~~sp~~~~lla~s~---dg~I~i~D~~t~~~~--~~l~~h~~~V~sv~~spdg~~Las  696 (792)
                      .+  ..-...+.  ...  ..+.-+....+|+....   .+.+++.+.......  .......+--..+.  ..+.+++.
T Consensus       208 gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~e--h~~d~f~i  285 (682)
T COG1770         208 GTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVE--HGGDRFYI  285 (682)
T ss_pred             CCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeee--ecCcEEEE
Confidence            33  11122222  222  22333444556665553   357888887665321  11111111111122  12333333


Q ss_pred             Ee--CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEE
Q 003842          697 VS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTM  758 (792)
Q Consensus       697 ~s--~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---~I~IwDl~~~~~~  758 (792)
                      -+  .+ ..+|+..........-..+..|...+.--.|+--.++|+....++   .|++++..++...
T Consensus       286 ~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~  353 (682)
T COG1770         286 LSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER  353 (682)
T ss_pred             EecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence            22  22 455555433111122334555666666666777777788776654   7888998876654

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.48  E-value=0.0084  Score=65.96  Aligned_cols=140  Identities=21%  Similarity=0.314  Sum_probs=97.4

Q ss_pred             eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEE
Q 003842          641 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHE  718 (792)
Q Consensus       641 ~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~  718 (792)
                      ....|.+.+..+++++.+..|..||-....... +. .++....++|+-++..++...+.  .+++||+.+....    .
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~le-~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq----q  111 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVILE-LN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ----Q  111 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhcceecc-cC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH----H
Confidence            345677777788888888888888865433222 11 33455678999988876665544  8999999764211    1


Q ss_pred             eecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-cCCCeEEEEEeCCCCEEEEEeCCCc
Q 003842          719 LSCN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-HEGLIAALAVSTETGYVASASHDKF  787 (792)
Q Consensus       719 ~~~~-~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~-h~~~V~sl~fspdg~~LaSgs~DG~  787 (792)
                      +... ...-.-+.|++.+..++.+...|.+.||+..+.+.....+ |...+++++|.+++ +++.++.|..
T Consensus       112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~  181 (615)
T KOG2247|consen  112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT  181 (615)
T ss_pred             HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence            1111 1111226899999999999999999999998888775555 99999999999876 4555555544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.36  E-value=2.3  Score=50.14  Aligned_cols=109  Identities=12%  Similarity=0.203  Sum_probs=69.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe--CCCCEEEEEEcCCeEEEEECC---
Q 003842          680 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH--PTYPSLLVIGCYQSLELWNMS---  753 (792)
Q Consensus       680 ~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fs--pdg~~L~sgs~dg~I~IwDl~---  753 (792)
                      ....-+.-+.-++..++.+.. .+.|||.+.+. .+.-..+ .....|..+.|.  |++..|++.|..+.|.+|--.   
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence            344445555545544444444 99999998753 1122222 456778888875  688999999999999998532   


Q ss_pred             --CC-------cEEEEcccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          754 --EN-------KTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       754 --~~-------~~~~~~~h~-~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                        ..       +.+.+..|+ .+|.+..|..+|.+++.+|  +.+.|++
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d  154 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD  154 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence              11       122344555 6899999999997666543  4566654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02790 Kelch-like protein; Provisional

Probab=93.36  E-value=3.3  Score=47.94  Aligned_cols=166  Identities=8%  Similarity=-0.064  Sum_probs=79.8

Q ss_pred             CeEEEEEeCCC-----cEEEEEcCCCeeEEEee--CCe-eEEEEecCCCEEEEEEcC--CeEEEEECCCCeEEE--EecC
Q 003842          610 DDLICSCDGDG-----EIRYWSINNGSCTRVFK--GGT-AQMRFQPHLGRYLAAAAE--NVVSILDAETQACRL--SLQG  677 (792)
Q Consensus       610 ~~ll~sgs~Dg-----~I~iwdl~~~~~~~~~~--~~~-~~v~~sp~~~~lla~s~d--g~I~i~D~~t~~~~~--~l~~  677 (792)
                      +.++++|+.++     .+..||..+.+....-.  ... .......++..+++|+.+  ..+..||..+.+-..  .+..
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~  351 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK  351 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence            45666777543     57788888766543221  111 111122344444555543  467888876653322  1111


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003842          678 HTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       678 h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~  753 (792)
                      ..... +++ .-+|++.+.|+.+    .+..||.++. .+..+..+....  ....+..-+++..++|   |.+.+||..
T Consensus       352 ~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~-~W~~~~~m~~~r--~~~~~~~~~~~IYv~G---G~~e~ydp~  423 (480)
T PHA02790        352 PRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHD-QWQFGPSTYYPH--YKSCALVFGRRLFLVG---RNAEFYCES  423 (480)
T ss_pred             CCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCC-EEEeCCCCCCcc--ccceEEEECCEEEEEC---CceEEecCC
Confidence            11111 222 2356766666643    4777887653 112211111111  1112223345544444   457889998


Q ss_pred             CCcEEEEcc--c-CCCeEEEEEeCCCCEEEEEeCC
Q 003842          754 ENKTMTLTA--H-EGLIAALAVSTETGYVASASHD  785 (792)
Q Consensus       754 ~~~~~~~~~--h-~~~V~sl~fspdg~~LaSgs~D  785 (792)
                      +++...+..  + .... +++ .-++++.+.||.+
T Consensus       424 ~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~  456 (480)
T PHA02790        424 SNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFY  456 (480)
T ss_pred             CCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcC
Confidence            877654332  1 1122 222 2367788888764

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=93.33  E-value=13  Score=40.73  Aligned_cols=15  Identities=0%  Similarity=0.044  Sum_probs=10.4

Q ss_pred             CcEEEEEcCCCeeEE
Q 003842          620 GEIRYWSINNGSCTR  634 (792)
Q Consensus       620 g~I~iwdl~~~~~~~  634 (792)
                      ..|.+||..+.+...
T Consensus       168 ~~v~~YDp~t~~W~~  182 (346)
T TIGR03547       168 KNVLSYDPSTNQWRN  182 (346)
T ss_pred             ceEEEEECCCCceeE
Confidence            457888988766443

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.27  E-value=2.1  Score=53.66  Aligned_cols=227  Identities=11%  Similarity=0.026  Sum_probs=107.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC-CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003842          513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR  591 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~-~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~  591 (792)
                      .....++|++.-.++|.|+.+|.|++|-...-+.+.....-.. .+..+.|......+.....+..+.+|........  
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~--  113 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV--  113 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee--
Confidence            4567889999999999999999999997654333322221111 2222222222223334444555666655431111  


Q ss_pred             EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----eCCeeEE-EEecCCCEEEEEEcCCeEEEEEC
Q 003842          592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQM-RFQPHLGRYLAAAAENVVSILDA  666 (792)
Q Consensus       592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v-~~sp~~~~lla~s~dg~I~i~D~  666 (792)
                         .+...+++....+  .-.++.+ ..+.+++||..-.......    ....... .+.+..-.+..--.+-.-.+|-+
T Consensus       114 ---~~~~~~~~~~~~~--~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  187 (993)
T KOG1983|consen  114 ---FLKQEITSFVTDP--PPDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISL  187 (993)
T ss_pred             ---ecCCcceeccCCC--Ccchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeec
Confidence               1223333333222  2122344 7788888886532211111    1110000 01100000000000000001111


Q ss_pred             CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003842          667 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS  746 (792)
Q Consensus       667 ~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~  746 (792)
                      ....  ..+..+..++.+..+......+.......+.+|+.....   ..+.+.     +....+..++..++++..||.
T Consensus       188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~v~~h~Dgs  257 (993)
T KOG1983|consen  188 PDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKY---VQSAYL-----PNGQLESRDGSHFVSYHTDGS  257 (993)
T ss_pred             cccc--ccccccccccceeeeecCCCcceeeeeeeeeehhccccc---chhhcc-----cccccCccCCceEEEEEecCC
Confidence            0000  122224455666666555565655555566666654321   111111     111122788999999999999


Q ss_pred             EEEEECCCCcE
Q 003842          747 LELWNMSENKT  757 (792)
Q Consensus       747 I~IwDl~~~~~  757 (792)
                      +.+||...++.
T Consensus       258 ~~fWd~s~g~~  268 (993)
T KOG1983|consen  258 YAFWDVSSGKL  268 (993)
T ss_pred             EEeeecCCCce
Confidence            99999998754

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.22  E-value=4.6  Score=47.53  Aligned_cols=175  Identities=11%  Similarity=0.213  Sum_probs=89.2

Q ss_pred             CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE------EeeCCeeEEEEecCC
Q 003842          576 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR------VFKGGTAQMRFQPHL  649 (792)
Q Consensus       576 g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~------~~~~~~~~v~~sp~~  649 (792)
                      -.|+||++.  +..+..+.-..+.+-.+.|+.+. .|| +...||++++|++-......      .....+..+.+..  
T Consensus        64 ~~I~If~~s--G~lL~~~~w~~~~lI~mgWs~~e-eLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~--  137 (829)
T KOG2280|consen   64 PYIRIFNIS--GQLLGRILWKHGELIGMGWSDDE-ELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH--  137 (829)
T ss_pred             eeEEEEecc--ccchHHHHhcCCCeeeecccCCc-eEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEec--
Confidence            347888876  45554444344478899999774 344 66789999999986432221      1112233333333  


Q ss_pred             CEEEEEEcCCeEEEEECCCCeEEEEecC-CCCCeEEEEEc--CCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeecC
Q 003842          650 GRYLAAAAENVVSILDAETQACRLSLQG-HTKPIDSVCWD--PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCN  722 (792)
Q Consensus       650 ~~lla~s~dg~I~i~D~~t~~~~~~l~~-h~~~V~sv~~s--pdg~---~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~  722 (792)
                      +-+++-..+|.|.+..-.....+.++.. ......+.||.  +++.   .++-...- ...++-+....  .....+...
T Consensus       138 ~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~--~q~~~~~~~  215 (829)
T KOG2280|consen  138 NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR--VQLHALSWP  215 (829)
T ss_pred             CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccc--ccccccCCC
Confidence            3344444455444443322222222222 11111112222  2211   11111101 11122221111  112222223


Q ss_pred             CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          723 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       723 ~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      ...+..|+++|+.++|+.-...|.|.+-+.+..+++
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l  251 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL  251 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence            456888999999999999999999999988766654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=93.21  E-value=0.23  Score=37.53  Aligned_cols=31  Identities=23%  Similarity=0.348  Sum_probs=28.5

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          554 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      ...|.+++|+|...+||.++.||.|.||.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999994

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.14  E-value=1.9  Score=50.78  Aligned_cols=125  Identities=13%  Similarity=0.167  Sum_probs=82.3

Q ss_pred             ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEEC--CCCCeEEEEeCCCc
Q 003842          501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFS--PSMPRLATSSFDKT  577 (792)
Q Consensus       501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fs--pdg~~Lasgs~Dg~  577 (792)
                      .+....++......+..+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|.  |++..+++.|....
T Consensus        18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~   97 (631)
T PF12234_consen   18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH   97 (631)
T ss_pred             EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence            334445566666667777777766665665556689999998876544333 457889999995  58889999999999


Q ss_pred             EEEEeCC-----CCC---ceeEEe--cccC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 003842          578 VRVWDAD-----NPG---YSLRTF--MGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSIN  628 (792)
Q Consensus       578 V~IWdl~-----s~~---~~i~~~--~~h~-~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~  628 (792)
                      |.+|.--     +..   ..++.+  ..|+ .+|.+..|.++|. ++ +|+ ++.+.|+|-.
T Consensus        98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk~  156 (631)
T PF12234_consen   98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDKW  156 (631)
T ss_pred             EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECCC
Confidence            9998542     111   122222  2333 5789999999875 33 232 5677777643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.13  E-value=18  Score=40.68  Aligned_cols=108  Identities=13%  Similarity=-0.001  Sum_probs=60.3

Q ss_pred             CeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-----EEEEecC--CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCC
Q 003842          639 GTAQMRFQPHLGRYLAAAAENVVSILDAETQA-----CRLSLQG--HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS  711 (792)
Q Consensus       639 ~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~-----~~~~l~~--h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~  711 (792)
                      ....+.+.+++..++ ++..|.+..-+ ..++     ....+..  ....+.++.|.+++..+++|..+.+.+. ...++
T Consensus       282 ~l~~v~~~~dg~l~l-~g~~G~l~~S~-d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~  358 (398)
T PLN00033        282 RIQNMGWRADGGLWL-LTRGGGLYVSK-GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGK  358 (398)
T ss_pred             ceeeeeEcCCCCEEE-EeCCceEEEec-CCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCc
Confidence            345677777755554 44556654432 2222     1121211  1234888999988888887777644433 34444


Q ss_pred             CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003842          712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW  750 (792)
Q Consensus       712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~Iw  750 (792)
                      ..............++.+.|.++++ .++.+.+|.|.-|
T Consensus       359 tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~  396 (398)
T PLN00033        359 SWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY  396 (398)
T ss_pred             ceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence            3333332233345678888877655 5666667776554

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=93.08  E-value=5.4  Score=43.37  Aligned_cols=108  Identities=9%  Similarity=0.082  Sum_probs=53.1

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCce---eEEecc---CCCCEEEEEECCCCCeEEEEeCC-----CcEEEEeCCCC
Q 003842          523 DGKLLATGGHD-----KKAVLWHTDTLKS---KTNLEE---HSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNP  586 (792)
Q Consensus       523 dg~~Lasgs~D-----g~I~vWdl~t~~~---~~~l~~---h~~~V~~i~fspdg~~Lasgs~D-----g~V~IWdl~s~  586 (792)
                      ++.+++.|+.+     ..+..||+.+.+.   ...+..   ......++.  -++++++.|+.+     ..+.+||+.+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--KDGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            55677777754     3567777766543   122211   111111222  256666777642     35788888764


Q ss_pred             CceeE-EecccCCCeEEEEEcCCCCeEEEEEeCCC----cEEEEEcCCCeeEE
Q 003842          587 GYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNGSCTR  634 (792)
Q Consensus       587 ~~~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~Dg----~I~iwdl~~~~~~~  634 (792)
                      ..... .+... ......+... ++.+++.|+.++    .+.+||+++.+...
T Consensus       150 ~W~~~~~~p~~-~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~  200 (323)
T TIGR03548       150 EWFELPDFPGE-PRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQWQK  200 (323)
T ss_pred             CeeECCCCCCC-CCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCeeEE
Confidence            33221 11111 1111122122 245676777654    35688888766543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=92.98  E-value=5.1  Score=45.44  Aligned_cols=30  Identities=17%  Similarity=0.411  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003842          725 KFHSCVFHPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       725 ~i~si~fspdg~~L~sgs~dg~I~IwDl~~  754 (792)
                      .|..+++.+..+.+++...++.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            366777777777788888888888888764

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.77  E-value=22  Score=40.65  Aligned_cols=59  Identities=14%  Similarity=0.139  Sum_probs=40.9

Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--eEEec-----cCCCCEEEEEECCCC
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLE-----EHSSLITDVRFSPSM  566 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~--~~~l~-----~h~~~V~~i~fspdg  566 (792)
                      +-..-...+.|+|.|||++|++--..|.|++++..++..  +..+.     ........|+|+|+-
T Consensus        25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            334456789999999998777765579999998665432  21111     135678999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=92.75  E-value=17  Score=43.47  Aligned_cols=61  Identities=21%  Similarity=0.288  Sum_probs=41.2

Q ss_pred             eccCCCCEEEEEECCCCCeEEEEeCCCc--EEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEE
Q 003842          550 LEEHSSLITDVRFSPSMPRLATSSFDKT--VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC  614 (792)
Q Consensus       550 l~~h~~~V~~i~fspdg~~Lasgs~Dg~--V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~  614 (792)
                      +..+...+..+.|+|++..++..+.++.  ..+|-+...+    .+..+...|..+.|++++..+++
T Consensus        55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~  117 (620)
T COG1506          55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAF  117 (620)
T ss_pred             ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEE
Confidence            4456778889999999999988874433  4455554322    33345566778888888876664

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.59  E-value=8.1  Score=42.99  Aligned_cols=147  Identities=14%  Similarity=0.105  Sum_probs=85.6

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCC--ce-eEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc---eeE
Q 003842          518 CHFSSDGKLLATGGHDKKAVLWHTDTL--KS-KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY---SLR  591 (792)
Q Consensus       518 lafspdg~~Lasgs~Dg~I~vWdl~t~--~~-~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~---~i~  591 (792)
                      +-|+..++.|+ +...|-+.-|.+...  .. +..-....++|.+|.|++|.+.||+--.|++|-+++...+..   ...
T Consensus        28 vFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~  106 (657)
T KOG2377|consen   28 VFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ  106 (657)
T ss_pred             eeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence            33443333333 333445555655422  22 222224567999999999999999999999999999843221   122


Q ss_pred             EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC----CeeEEEeeCCeeEEEEecCCCEEEEEEc--CCeEEEEE
Q 003842          592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----GSCTRVFKGGTAQMRFQPHLGRYLAAAA--ENVVSILD  665 (792)
Q Consensus       592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~----~~~~~~~~~~~~~v~~sp~~~~lla~s~--dg~I~i~D  665 (792)
                      +.+.....|..++|..+.+ +.+..  +..+.+|-+..    -+.++..+..+.-..|.++...++.++.  .+.+.-+-
T Consensus       107 ~ck~k~~~IlGF~W~~s~e-~A~i~--~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~  183 (657)
T KOG2377|consen  107 ECKTKNANILGFCWTSSTE-IAFIT--DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFH  183 (657)
T ss_pred             HhccCcceeEEEEEecCee-EEEEe--cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEE
Confidence            2333455689999987633 33232  34456665432    2344556667777788888776665554  33443344


Q ss_pred             CCC
Q 003842          666 AET  668 (792)
Q Consensus       666 ~~t  668 (792)
                      +++
T Consensus       184 ~~~  186 (657)
T KOG2377|consen  184 FRA  186 (657)
T ss_pred             Eee
Confidence            443

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=92.39  E-value=2.4  Score=44.09  Aligned_cols=129  Identities=16%  Similarity=0.205  Sum_probs=74.8

Q ss_pred             EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCC-cceEE--EeecCCCceEEEEEeC
Q 003842          661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSE-GECVH--ELSCNGNKFHSCVFHP  733 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~-~~~i~--~~~~~~~~i~si~fsp  733 (792)
                      -.+||+.+.+..-..........+-.+.+||++|.+|+..    .+++|+-..... .....  ..-....+.-+...-+
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            4578888876543222222233334577899999998863    688888654111 11111  1112344556667778


Q ss_pred             CCCEEEEEEcCC-eEEEEECCC--CcEEEE--cc------cCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003842          734 TYPSLLVIGCYQ-SLELWNMSE--NKTMTL--TA------HEGLIAALAVSTETGYVASASHDKFVK  789 (792)
Q Consensus       734 dg~~L~sgs~dg-~I~IwDl~~--~~~~~~--~~------h~~~V~sl~fspdg~~LaSgs~DG~I~  789 (792)
                      ||+.|++|+... +..+|.-..  .....+  ..      ....---+...|||++|+.+..+..|.
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~  194 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY  194 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence            999999999875 556666432  122211  11      111222456679999999988776554

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=92.33  E-value=38  Score=42.38  Aligned_cols=137  Identities=12%  Similarity=0.112  Sum_probs=77.5

Q ss_pred             CEEEEEEc---------CCeEEEEECCC-----Ce-----EEEE--ecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 003842          650 GRYLAAAA---------ENVVSILDAET-----QA-----CRLS--LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG  708 (792)
Q Consensus       650 ~~lla~s~---------dg~I~i~D~~t-----~~-----~~~~--l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~  708 (792)
                      .++++|+.         .|.++|||+-.     ++     .++.  .+.-++.|..+|= -+| +|+++..-.|.||++.
T Consensus      1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSSQGQKIIVRKLD 1124 (1366)
T ss_pred             ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEccCcEEEEEEec
Confidence            45666654         47899998632     21     1111  1234567776653 244 4555555589999995


Q ss_pred             CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-EEEEcc---cCCCeEEEEEeCCCC--EEEEE
Q 003842          709 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLTA---HEGLIAALAVSTETG--YVASA  782 (792)
Q Consensus       709 s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~-~~~~~~---h~~~V~sl~fspdg~--~LaSg  782 (792)
                      .......+.-+   +-.+......--.++|++|.-...|.+.-+.+.- .+.+..   ..-.+.++.|--||.  +++++
T Consensus      1125 r~~~ligVaFi---D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvs 1201 (1366)
T KOG1896|consen 1125 RDSELIGVAFI---DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVS 1201 (1366)
T ss_pred             cCCcceeeEEe---ccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEE
Confidence            44332222222   2223333333345667777777777776654432 223322   233577888877665  57778


Q ss_pred             eCCCcEEEe
Q 003842          783 SHDKFVKLW  791 (792)
Q Consensus       783 s~DG~I~IW  791 (792)
                      ..|+.|++|
T Consensus      1202 Da~rNi~vy 1210 (1366)
T KOG1896|consen 1202 DADRNIHVY 1210 (1366)
T ss_pred             cCCCcEEEE
Confidence            889999886

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=92.30  E-value=17  Score=39.92  Aligned_cols=151  Identities=14%  Similarity=0.154  Sum_probs=75.4

Q ss_pred             EEEEEeCCCeEEEEECCCCceeE--------EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccC
Q 003842          526 LLATGGHDKKAVLWHTDTLKSKT--------NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS  597 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~~~~--------~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~  597 (792)
                      ++.+|..+|-|..-+...-....        ....-.+.-..|+|...+.-|+.|  |...-+|.+.-.+.....+..+.
T Consensus        78 l~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~Va--DAYlGL~~V~p~g~~a~~l~~~~  155 (376)
T KOG1520|consen   78 LKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVA--DAYLGLLKVGPEGGLAELLADEA  155 (376)
T ss_pred             EEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEE--ecceeeEEECCCCCcceeccccc
Confidence            45666666666665552111111        111223556789999888666666  34455665554344433333322


Q ss_pred             CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCE---EEEEEcCCeEEEEECCCCeEEEE
Q 003842          598 ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR---YLAAAAENVVSILDAETQACRLS  674 (792)
Q Consensus       598 ~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~---lla~s~dg~I~i~D~~t~~~~~~  674 (792)
                      ... -+.|..+   +  ....+|.|++=|..+.-              ... ..   ++.+..+|.+.-||..+......
T Consensus       156 ~G~-~~kf~N~---l--dI~~~g~vyFTDSSsk~--------------~~r-d~~~a~l~g~~~GRl~~YD~~tK~~~VL  214 (376)
T KOG1520|consen  156 EGK-PFKFLND---L--DIDPEGVVYFTDSSSKY--------------DRR-DFVFAALEGDPTGRLFRYDPSTKVTKVL  214 (376)
T ss_pred             cCe-eeeecCc---e--eEcCCCeEEEecccccc--------------chh-heEEeeecCCCccceEEecCcccchhhh
Confidence            221 2222211   1  11124444443332211              110 11   22233478888999877654333


Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCC
Q 003842          675 LQGHTKPIDSVCWDPSGELLASVSED  700 (792)
Q Consensus       675 l~~h~~~V~sv~~spdg~~Las~s~d  700 (792)
                      +. .-.-.+.++.++|+.+++.|-..
T Consensus       215 ld-~L~F~NGlaLS~d~sfvl~~Et~  239 (376)
T KOG1520|consen  215 LD-GLYFPNGLALSPDGSFVLVAETT  239 (376)
T ss_pred             hh-cccccccccCCCCCCEEEEEeec
Confidence            32 23345678999999998887655

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=92.29  E-value=27  Score=43.84  Aligned_cols=78  Identities=17%  Similarity=0.129  Sum_probs=39.1

Q ss_pred             eeeeecCCCCeEEEEEcC--CCC-EE----EEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEEC---CCC-CeEEEEe
Q 003842          505 ANSVRASTSKVICCHFSS--DGK-LL----ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS---PSM-PRLATSS  573 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafsp--dg~-~L----asgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fs---pdg-~~Lasgs  573 (792)
                      ..-..||...|.|..+.-  ++. +|    ++.+-||+++|=|..-   ++.+.......+-+...   +.- -+||..-
T Consensus       340 t~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfNy---IRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsP  416 (1899)
T KOG4659|consen  340 TAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFNY---IRRISQDGQVSTILTLGLTDTSHSYYIAVSP  416 (1899)
T ss_pred             EeccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccchh---eeeecCCCceEEEEEecCCCccceeEEEecC
Confidence            334468888888876653  222 22    2345788888877542   22222111111111221   111 1455556


Q ss_pred             CCCcEEEEeCCC
Q 003842          574 FDKTVRVWDADN  585 (792)
Q Consensus       574 ~Dg~V~IWdl~s  585 (792)
                      -||+++|=|..+
T Consensus       417 vdgtlyvSdp~s  428 (1899)
T KOG4659|consen  417 VDGTLYVSDPLS  428 (1899)
T ss_pred             cCceEEecCCCc
Confidence            677776666554

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.25  E-value=1.4  Score=54.60  Aligned_cols=161  Identities=16%  Similarity=0.247  Sum_probs=86.5

Q ss_pred             eCCCeEEEEECCCCceeEEeccCCCCEEEEEEC--------CCCCeEEEEeCCCcEEEEeCCCCC--ceeE------Eec
Q 003842          531 GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS--------PSMPRLATSSFDKTVRVWDADNPG--YSLR------TFM  594 (792)
Q Consensus       531 s~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fs--------pdg~~Lasgs~Dg~V~IWdl~s~~--~~i~------~~~  594 (792)
                      +.|+.+.+|+++++.....+.+-...|..|..-        |.=+++++.+.--.|.|+-+.-..  ....      .+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            358899999999988888888877777777642        333455555555556666543211  1111      111


Q ss_pred             ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003842          595 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS  674 (792)
Q Consensus       595 ~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~  674 (792)
                      .....|.||....+|+ +|+ ++.||  .+|.+--...-.-|......++.+..        .-..+.      .. +..
T Consensus       176 ~dg~~V~~I~~t~nGR-IF~-~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s--------~ls~lv------Ps-~~~  236 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGR-IFF-AGRDG--NLYELVYQAEDGWFGSRCRKICLTKS--------VLSSLV------PS-LLS  236 (1311)
T ss_pred             cCCceEEEEEeccCCc-EEE-eecCC--CEEEEEEeccCchhhcccccccCchh--------HHHHhh------hh-hhc
Confidence            2345678888655554 553 44566  44443211000000000011110000        000000      00 111


Q ss_pred             e-cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003842          675 L-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG  710 (792)
Q Consensus       675 l-~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~  710 (792)
                      + ..+..+|..++++....++.+-++. .|.+||+...
T Consensus       237 ~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  237 VPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             CCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence            2 2467789999998888888888877 8999999763

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=92.19  E-value=4.2  Score=47.89  Aligned_cols=163  Identities=16%  Similarity=0.160  Sum_probs=90.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE--Eec-cCCC------CEEEEEECCCCCeEEEEeC-CC---cE
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLE-EHSS------LITDVRFSPSMPRLATSSF-DK---TV  578 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~--~l~-~h~~------~V~~i~fspdg~~Lasgs~-Dg---~V  578 (792)
                      .+.|..+.|..+++.+++...+|.|.+||...+....  .+. .+..      .|.....-....++++.+. ++   .+
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            6789999999999999999999999999993322211  222 1221      2222221112334444443 22   46


Q ss_pred             EEEeCCCCCceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC-------eeEEEEecC
Q 003842          579 RVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------TAQMRFQPH  648 (792)
Q Consensus       579 ~IWdl~s~~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-------~~~v~~sp~  648 (792)
                      +++.+......+..+.   .+........|+-..+.+..-  .+++|.+|++...+..+.+.-+       ...+.+.+-
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~  286 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP  286 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence            7788732223333222   122222222232222333322  6889999999888776665422       223455444


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003842          649 LGRYLAAAAENVVSILDAETQACRLSLQ  676 (792)
Q Consensus       649 ~~~lla~s~dg~I~i~D~~t~~~~~~l~  676 (792)
                      ...-+.-+.++.|++.|+.-...+..+.
T Consensus       287 s~nRvLLs~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  287 SPNRVLLSVNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             CCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence            4444455667899999987665555444

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=92.08  E-value=3.2  Score=38.68  Aligned_cols=106  Identities=14%  Similarity=0.130  Sum_probs=59.8

Q ss_pred             CCCEEEEEEcCCeEEEEECCCCe--------EEEEecCCCCCeEEEEEcC-----CCCEEEEEeCCeEEEEECCCCCCcc
Q 003842          648 HLGRYLAAAAENVVSILDAETQA--------CRLSLQGHTKPIDSVCWDP-----SGELLASVSEDSVRVWTVGSGSEGE  714 (792)
Q Consensus       648 ~~~~lla~s~dg~I~i~D~~t~~--------~~~~l~~h~~~V~sv~~sp-----dg~~Las~s~d~I~IwDl~s~~~~~  714 (792)
                      ....|++++..|.|.|++.....        .+..+ .-...|++|+--+     +...|+.|+...|..||+..... .
T Consensus         9 ~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d-~   86 (136)
T PF14781_consen    9 VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSD-L   86 (136)
T ss_pred             CceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCch-h
Confidence            33445555666666666544321        12222 2345577765433     45688889888999999976532 2


Q ss_pred             eEEEeecCCCceEEEEEe---CCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          715 CVHELSCNGNKFHSCVFH---PTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       715 ~i~~~~~~~~~i~si~fs---pdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      ..+++   ...+.++.+-   ....-++..+.+..|.-||....+.+
T Consensus        87 Fyke~---~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   87 FYKEV---PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             hhhhC---ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence            22222   2445555553   22234555555667888887766655

>KOG2109 consensus WD40 repeat protein [General function prediction only]

Probab=91.91  E-value=0.35  Score=55.43  Aligned_cols=82  Identities=18%  Similarity=0.209  Sum_probs=55.7

Q ss_pred             ccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCce-----eEEeccC-----CCCEEEEEECC
Q 003842          496 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKS-----KTNLEEH-----SSLITDVRFSP  564 (792)
Q Consensus       496 ~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg-~I~vWdl~t~~~-----~~~l~~h-----~~~V~~i~fsp  564 (792)
                      +.+-.++..+..|+.|..+|..++|.+.|.+|++++..| .|.++.+..-.+     ...+..|     ...|-.|+|+.
T Consensus       299 vkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~  378 (788)
T KOG2109|consen  299 VKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSE  378 (788)
T ss_pred             eecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhh
Confidence            344556778888999999999999999999999988665 355555432111     1111111     22355678888


Q ss_pred             CCCeEEEEeCCCc
Q 003842          565 SMPRLATSSFDKT  577 (792)
Q Consensus       565 dg~~Lasgs~Dg~  577 (792)
                      ...+++.++.+|.
T Consensus       379 ~s~~r~~gsc~Ge  391 (788)
T KOG2109|consen  379 VSTIRTAGSCEGE  391 (788)
T ss_pred             hcceEeecccCCC
Confidence            8888888887764

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.82  E-value=20  Score=38.21  Aligned_cols=214  Identities=12%  Similarity=0.135  Sum_probs=116.5

Q ss_pred             CEEEEEECCCCCeEEEEeCCCcEEEEeCCC------CCceeEEecc-----cCCCeEEEEEcCCCC-----------eEE
Q 003842          556 LITDVRFSPSMPRLATSSFDKTVRVWDADN------PGYSLRTFMG-----HSASVMSLDFHPNKD-----------DLI  613 (792)
Q Consensus       556 ~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s------~~~~i~~~~~-----h~~~V~sl~fspd~~-----------~ll  613 (792)
                      .-+.|+|+|.+.+.++....+...+||...      ....+.++..     .....+.+.|+....           -.+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            457899999998888888889999999971      1222333331     234577888875422           235


Q ss_pred             EEEeCCCcEEEEEcCCCee-----EEEee----CCe-eEEEEe--cCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCC
Q 003842          614 CSCDGDGEIRYWSINNGSC-----TRVFK----GGT-AQMRFQ--PHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTK  680 (792)
Q Consensus       614 ~sgs~Dg~I~iwdl~~~~~-----~~~~~----~~~-~~v~~s--p~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~~  680 (792)
                      +.+++||+|.-|...-+..     ...+.    +.+ .-+++.  ..+.+|+++.- .+.|.|||..-.++... .....
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~D  182 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFID  182 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCccC
Confidence            5788999999998533222     11222    111 113333  23455555443 78899998654332110 00011


Q ss_pred             CeEEEEEcC------CCCEEEE--------------EeCCeEEEEECCCCCCcceEEEeec--CCCceEEEEEeC-----
Q 003842          681 PIDSVCWDP------SGELLAS--------------VSEDSVRVWTVGSGSEGECVHELSC--NGNKFHSCVFHP-----  733 (792)
Q Consensus       681 ~V~sv~~sp------dg~~Las--------------~s~d~I~IwDl~s~~~~~~i~~~~~--~~~~i~si~fsp-----  733 (792)
                      +-.-.-|.|      .++++++              .+.+.|-+||+.-    ..++++..  .-+..+.++..|     
T Consensus       183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G----~l~~r~as~g~LNaPWG~a~APa~FG~  258 (336)
T TIGR03118       183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG----QLLRRVASSGRLNAPWGLAIAPESFGS  258 (336)
T ss_pred             CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC----cEEEEeccCCcccCCceeeeChhhhCC
Confidence            100001111      1222222              1122678888753    45555432  223455666644     


Q ss_pred             -CCCEEEEEEcCCeEEEEECCCCcEE-EEcccC------CCeEEEEEeC
Q 003842          734 -TYPSLLVIGCYQSLELWNMSENKTM-TLTAHE------GLIAALAVST  774 (792)
Q Consensus       734 -dg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~------~~V~sl~fsp  774 (792)
                       .+..|+---.||+|.+||..+++.+ .+....      ..++.|.|..
T Consensus       259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence             3454554456899999999988866 333322      3467888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=91.68  E-value=22  Score=38.36  Aligned_cols=202  Identities=11%  Similarity=0.068  Sum_probs=93.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCce---------------eEEeccCCCCEEEEEECCCC-CeEEEEe
Q 003842          511 STSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKS---------------KTNLEEHSSLITDVRFSPSM-PRLATSS  573 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs-~Dg~I~vWdl~t~~~---------------~~~l~~h~~~V~~i~fspdg-~~Lasgs  573 (792)
                      +..+|+++...+.-+.|++-+ ....+++|++.....               ....-.|......+.+.... ..++++.
T Consensus        41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A  120 (302)
T smart00036       41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA  120 (302)
T ss_pred             CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence            355799999998877666654 334499999853331               01122344433333333222 2344555


Q ss_pred             CCCcEEEEeCCCCCceeEEec-------ccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCC--CeeEE-----EeeC
Q 003842          574 FDKTVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINN--GSCTR-----VFKG  638 (792)
Q Consensus       574 ~Dg~V~IWdl~s~~~~i~~~~-------~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~--~~~~~-----~~~~  638 (792)
                      ...+|.+|...........+.       .-...+..+..+++. ...++.|+..+...++++..  .....     ....
T Consensus       121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~  200 (302)
T smart00036      121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE  200 (302)
T ss_pred             cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence            566777765543211111111       111233333323221 23454555433344444432  11000     0011


Q ss_pred             ---CeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeEE-EEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCc
Q 003842          639 ---GTAQMRFQPHLGRYLAAAAENVVSILDAET-QACR-LSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG  713 (792)
Q Consensus       639 ---~~~~v~~sp~~~~lla~s~dg~I~i~D~~t-~~~~-~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~  713 (792)
                         ...++...++ +.++.+..+. ..+.|... .... ..+. -.....++++.  ..||++-..+.|.||++.++   
T Consensus       201 ~~~~p~~i~~l~~-~e~Llc~~~~-~v~Vn~~G~~~~r~~~l~-w~~~p~~~~~~--~pyll~~~~~~ievr~l~~~---  272 (302)
T smart00036      201 TSLKPISVVQVPR-DEFLLCYDEF-GVFVNLYGKRRSRNPILH-WEFMPESFAYH--SPYLLAFHDNGIEIRSIKTG---  272 (302)
T ss_pred             cccCceEEEEECC-CeEEEEECcE-EEEEeCCCCccccceEEE-cCCcccEEEEE--CCEEEEEcCCcEEEEECCCC---
Confidence               1122222222 4455544444 33344433 1111 1122 23445667766  46777777778999999887   


Q ss_pred             ceEEEee
Q 003842          714 ECVHELS  720 (792)
Q Consensus       714 ~~i~~~~  720 (792)
                      ..+.++.
T Consensus       273 ~l~q~i~  279 (302)
T smart00036      273 ELLQELA  279 (302)
T ss_pred             ceEEEEe
Confidence            4444443

Unpublished observations.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.60  E-value=5.6  Score=37.16  Aligned_cols=112  Identities=13%  Similarity=0.085  Sum_probs=65.8

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCc--------eeEEeccCCCCEEEEEECC-----CCCeEEEEeCCCcEEEEeC
Q 003842          517 CCHFSSDGKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       517 ~lafspdg~~Lasgs~Dg~I~vWdl~t~~--------~~~~l~~h~~~V~~i~fsp-----dg~~Lasgs~Dg~V~IWdl  583 (792)
                      .-.|......|++++..|+|.|++.....        .+..| .-...|++|+--+     +...|+.|+.. .|..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEc
Confidence            44566666688889999999999865332        22223 2445677765433     23466666654 5999999


Q ss_pred             CCCCceeEEecccCCCeEEEEEcCC---CCeEEEEEeCCCcEEEEEcCCCeeE
Q 003842          584 DNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGSCT  633 (792)
Q Consensus       584 ~s~~~~i~~~~~h~~~V~sl~fspd---~~~ll~sgs~Dg~I~iwdl~~~~~~  633 (792)
                      ++....  .++.-.+.|.+|.+-.-   ...++++| .+..|.-||..-.+..
T Consensus        81 ~~N~d~--Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   81 ENNSDL--FYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIF  130 (136)
T ss_pred             ccCchh--hhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEE
Confidence            874332  23334466777776321   22344344 3666666666544433

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.58  E-value=4  Score=48.59  Aligned_cols=102  Identities=14%  Similarity=0.111  Sum_probs=66.5

Q ss_pred             CCCEEEEEeCC-eEEEEECCCC-----------C------CcceEEEeecCCCceEEEEEe--CCCCEEEEEEcCCeEEE
Q 003842          690 SGELLASVSED-SVRVWTVGSG-----------S------EGECVHELSCNGNKFHSCVFH--PTYPSLLVIGCYQSLEL  749 (792)
Q Consensus       690 dg~~Las~s~d-~I~IwDl~s~-----------~------~~~~i~~~~~~~~~i~si~fs--pdg~~L~sgs~dg~I~I  749 (792)
                      +..+|+.|.+| .|.+|.+++-           +      ..++...+. .....++++++  ...++||+++....|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            55678888877 9999976321           0      011122222 23468899998  77888888888887777


Q ss_pred             EECCC--CcEE--EEcccCCCeEEEEEeCCC---C---EEEEEeCCCcEEEeC
Q 003842          750 WNMSE--NKTM--TLTAHEGLIAALAVSTET---G---YVASASHDKFVKLWK  792 (792)
Q Consensus       750 wDl~~--~~~~--~~~~h~~~V~sl~fspdg---~---~LaSgs~DG~I~IWd  792 (792)
                      |-+..  .+..  ....|...|-+|+|-++.   .   +|++++-.|.|.+|+
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~  244 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK  244 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence            75443  2222  223467789999997643   2   777888899988874

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=91.54  E-value=25  Score=40.50  Aligned_cols=264  Identities=14%  Similarity=0.088  Sum_probs=127.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003842          515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF  593 (792)
Q Consensus       515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~  593 (792)
                      |..+..+..| .|.+|+.+| |++.+.+..+...-.. -..+.|..+.-...| .+..|+..|..+ +.+...+..+...
T Consensus       208 I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r-~~l~rq~Lq~~~~  283 (671)
T COG3292         208 INALIADVQG-RLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWR-TRLPRQGLQIPLS  283 (671)
T ss_pred             HHHHHHHhcC-cEEEEeccc-eEEEchhhccccccCCCCcchheeeeecccCC-CEEEeeccccee-EecCCCCcccccc
Confidence            4444444444 466676665 6666655522221111 122334443333333 566676666332 3333323222222


Q ss_pred             ccc--CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---eCCeeE-EEEec--CCCEEEEEEcCCeEEEEE
Q 003842          594 MGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQ-MRFQP--HLGRYLAAAAENVVSILD  665 (792)
Q Consensus       594 ~~h--~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~-v~~sp--~~~~lla~s~dg~I~i~D  665 (792)
                      +.|  -..|.++....+|.  +.+++.++.+++-+-. ......+   ++.+.. ++..+  .+..+-...+-|.+.+-+
T Consensus       284 ~~~l~~S~vnsL~~D~dGs--LWv~t~~giv~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van  360 (671)
T COG3292         284 KMHLGVSTVNSLWLDTDGS--LWVGTYGGIVRYLTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVAN  360 (671)
T ss_pred             ccCCccccccceeeccCCC--EeeeccCceEEEecch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEec
Confidence            222  23455666666654  4466666666654432 1111111   111111 11111  122233333344555555


Q ss_pred             CCCCeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEc
Q 003842          666 AETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGC  743 (792)
Q Consensus       666 ~~t~~~~~~l~-~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~  743 (792)
                      ..++..+.... .....|+.+++..++.+.+....+.+..|+..+  ....+.+..+ ....+..+.-.|+++ |..|+.
T Consensus       361 ~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n--~~avlde~agl~ss~V~aived~dns-LWIGTs  437 (671)
T COG3292         361 GSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKN--EWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTS  437 (671)
T ss_pred             CCCCcEEEEeeeccccccchhhhccCCcEEEEecccchhhhccCC--cccccccccCCcccceeeeeecCCCC-EEEecc
Confidence            56665544432 234568888888866554444444788888765  1122322222 234577777888888 888888


Q ss_pred             CCeEEEEECCCCcEEE---Eccc---CCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          744 YQSLELWNMSENKTMT---LTAH---EGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       744 dg~I~IwDl~~~~~~~---~~~h---~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      +|.++. +.+.++...   +..|   .+.|..+.+.++|++-+.++ +| |..|
T Consensus       438 ~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~g-va~~  488 (671)
T COG3292         438 GGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG-SG-VAAW  488 (671)
T ss_pred             CCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEEec-ce-eeee
Confidence            876554 444443331   1122   23466778888887644332 33 4444

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.46  E-value=25  Score=38.44  Aligned_cols=141  Identities=17%  Similarity=0.239  Sum_probs=83.4

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCc------EEEEeCCCCC---cee-----EEecccCC--------CeEEEEEcCCCCe
Q 003842          554 SSLITDVRFSPSMPRLATSSFDKT------VRVWDADNPG---YSL-----RTFMGHSA--------SVMSLDFHPNKDD  611 (792)
Q Consensus       554 ~~~V~~i~fspdg~~Lasgs~Dg~------V~IWdl~s~~---~~i-----~~~~~h~~--------~V~sl~fspd~~~  611 (792)
                      -+.+..|.+.+++..+++.+.+|.      +..+++....   ..+     ..+....+        ...+|++.+++. 
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~-   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS-   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-
Confidence            355778888876667777777777      6655554311   111     11111111        345788855554 


Q ss_pred             EEEEEeCC------CcEEEEEcCCCeeEEEe------------------eCCeeEEEEecCCCEEEEEEc-----CC---
Q 003842          612 LICSCDGD------GEIRYWSINNGSCTRVF------------------KGGTAQMRFQPHLGRYLAAAA-----EN---  659 (792)
Q Consensus       612 ll~sgs~D------g~I~iwdl~~~~~~~~~------------------~~~~~~v~~sp~~~~lla~s~-----dg---  659 (792)
                      ++++.-.+      ..|+.++.. ++.+..+                  +.+...+++++++..|+++..     |+   
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            55465556      678888866 5554333                  123456899999997777765     22   


Q ss_pred             --------eEEEEECCC-C----eEEEEecC-----CCCCeEEEEEcCCCCEEEE
Q 003842          660 --------VVSILDAET-Q----ACRLSLQG-----HTKPIDSVCWDPSGELLAS  696 (792)
Q Consensus       660 --------~I~i~D~~t-~----~~~~~l~~-----h~~~V~sv~~spdg~~Las  696 (792)
                              .|..||..+ +    ...+.+..     ....|..+.+.+++++|+.
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                    244456554 2    22333332     3466888999999997774

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=91.35  E-value=39  Score=40.51  Aligned_cols=61  Identities=26%  Similarity=0.267  Sum_probs=42.0

Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCCCe--EEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEE
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGHDKK--AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT  571 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~Dg~--I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Las  571 (792)
                      ...+...+.++.|+|||.+++..+.++.  ..+|-+....   .+..+...|....|++++..++.
T Consensus        55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~  117 (620)
T COG1506          55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAF  117 (620)
T ss_pred             ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEE
Confidence            4456677889999999999998874332  3334332221   44456677888899999887776

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.13  E-value=1.3  Score=45.57  Aligned_cols=62  Identities=16%  Similarity=0.195  Sum_probs=48.4

Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCcEEE--------Ec-------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          730 VFHPTYPSLLVIGCYQSLELWNMSENKTMT--------LT-------AHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~~--------~~-------~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .+..++.+|++.+.+|.+++||+.+.+.+.        +.       .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~   93 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS   93 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence            355678899999999999999999987651        11       3556788999998888777665 57888885

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=91.00  E-value=14  Score=45.26  Aligned_cols=130  Identities=11%  Similarity=0.046  Sum_probs=73.1

Q ss_pred             CCcEEEEEcC-CCeeEE---EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCC
Q 003842          619 DGEIRYWSIN-NGSCTR---VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGE  692 (792)
Q Consensus       619 Dg~I~iwdl~-~~~~~~---~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~--h~~~V~sv~~spdg~  692 (792)
                      +|.++.|++- .++.+.   ...-.....++.|..+++ .++....+++||+-..++++..+.  ....|..+.|.  +.
T Consensus       911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~-LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~  987 (1205)
T KOG1898|consen  911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRV-LAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GA  987 (1205)
T ss_pred             CCceEEEEEEecCceeeeeeccCCCccceEEeccCCEE-EEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ce
Confidence            3456666653 233222   222233446677777754 455668999999988766554332  34567777764  45


Q ss_pred             EEEEEeCC-eEEEEECCCCCCcceEEEeecCC--CceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003842          693 LLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVFHPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       693 ~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~--~~i~si~fspdg~~L~sgs~dg~I~IwDl~~  754 (792)
                      .|++|... .|.++..+...  ..+..+.+..  ..++++. .-|...++.+..-|.+++..+..
T Consensus       988 RI~VgD~qeSV~~~~y~~~~--n~l~~fadD~~pR~Vt~~~-~lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen  988 RIVVGDIQESVHFVRYRRED--NQLIVFADDPVPRHVTALE-LLDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             EEEEeeccceEEEEEEecCC--CeEEEEeCCCccceeeEEE-EecCCceeeccccCcEEEEECCC
Confidence            56666544 55554444322  2333333222  2344443 44666688888888888877643

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=90.86  E-value=2.8  Score=48.87  Aligned_cols=107  Identities=14%  Similarity=0.203  Sum_probs=63.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF  593 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~  593 (792)
                      .++++.-+|.|..++.+..||+|++|++...+..+... ...+-..+.|...|  |+++..|..+.-|.-+  +.....|
T Consensus        16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d--gvvqqqf   90 (1636)
T KOG3616|consen   16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED--GVVQQQF   90 (1636)
T ss_pred             eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc--Ccchhhc
Confidence            46778888999999999999999999987544322222 22333455665544  7777778888888654  2222222


Q ss_pred             cc---cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc
Q 003842          594 MG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSI  627 (792)
Q Consensus       594 ~~---h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl  627 (792)
                      .-   ......++...|...+++  |.--|.|.-+|.
T Consensus        91 dyndqsekefss~~cdptaqnvv--gtlcggv~q~dc  125 (1636)
T KOG3616|consen   91 DYNDQSEKEFSSILCDPTAQNVV--GTLCGGVEQFDC  125 (1636)
T ss_pred             cccchhhhhccceecCchhhhhh--hhhccceeeehH
Confidence            11   122344555555544433  333455555553

>PRK05560 DNA gyrase subunit A; Validated

Probab=90.75  E-value=50  Score=40.78  Aligned_cols=259  Identities=10%  Similarity=0.044  Sum_probs=128.6

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCce---------eEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC---CCC
Q 003842          519 HFSSDGKLLATGGHDKKAVLWHTDTLKS---------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA---DNP  586 (792)
Q Consensus       519 afspdg~~Lasgs~Dg~I~vWdl~t~~~---------~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl---~s~  586 (792)
                      .+-++...+++-+.+|.|+.-++.....         ...++.. +.+..+........|+..+..|.+....+   ...
T Consensus       493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~  571 (805)
T PRK05560        493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA  571 (805)
T ss_pred             hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence            3445677888999999998876654321         1112222 34444444455556777777777665543   321


Q ss_pred             -----Ccee---EEecccCCCeEEEEEcCC-CCeEEEEEeCCCcEEEEEcCCCe-------eEEEeeC--CeeEEEEecC
Q 003842          587 -----GYSL---RTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGS-------CTRVFKG--GTAQMRFQPH  648 (792)
Q Consensus       587 -----~~~i---~~~~~h~~~V~sl~fspd-~~~ll~sgs~Dg~I~iwdl~~~~-------~~~~~~~--~~~~v~~sp~  648 (792)
                           +..+   ..+.....-|.++.+... ...+++..+.+|.++.-++....       ....++.  ....+.....
T Consensus       572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~  651 (805)
T PRK05560        572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDG  651 (805)
T ss_pred             CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCC
Confidence                 1222   112222333445555421 23355688889999987765322       1112222  1222333344


Q ss_pred             CCEEEEEEcCCeEEEEECCC---------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC------C
Q 003842          649 LGRYLAAAAENVVSILDAET---------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS------E  712 (792)
Q Consensus       649 ~~~lla~s~dg~I~i~D~~t---------~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~------~  712 (792)
                      ...+++.+..|.+..+....         |.....+...+.-+..+.+.+++.+++..+.. .++...+....      .
T Consensus       652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k  731 (805)
T PRK05560        652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK  731 (805)
T ss_pred             CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC
Confidence            56788888888777665532         12222232222223334444443355555555 66666543211      1


Q ss_pred             cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEE
Q 003842          713 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS  781 (792)
Q Consensus       713 ~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaS  781 (792)
                      ......+......+..+........+++.+.+|.+..++...-..  .......|..+.+..+ ..++.
T Consensus       732 G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~~--~gR~a~GVk~I~L~~~-D~V~~  797 (805)
T PRK05560        732 GVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEISI--TGRNTQGVRLIRLDEG-DKVVS  797 (805)
T ss_pred             cEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCCc--cccCCCCeeeEecCCC-CEEEE
Confidence            112222222233444443334445577777788777777654221  1222344666666443 34443

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.72  E-value=2.2  Score=52.95  Aligned_cols=72  Identities=11%  Similarity=0.171  Sum_probs=47.7

Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCC-------c--------------EEEEc-ccCCCeEEEEEeCC
Q 003842          720 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELW--NMSEN-------K--------------TMTLT-AHEGLIAALAVSTE  775 (792)
Q Consensus       720 ~~~~~~i~si~fspdg~~L~sgs~dg~I~Iw--Dl~~~-------~--------------~~~~~-~h~~~V~sl~fspd  775 (792)
                      ...+..|.++....+|+.+++ |.||.|+-+  ...++       +              ...+. .+..+|..+++...
T Consensus       175 ~~dg~~V~~I~~t~nGRIF~~-G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTENGRIFFA-GRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             ecCCceEEEEEeccCCcEEEe-ecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence            344566888887778875554 455544322  22111       0              11223 46779999999988


Q ss_pred             CCEEEEEeCCCcEEEeC
Q 003842          776 TGYVASASHDKFVKLWK  792 (792)
Q Consensus       776 g~~LaSgs~DG~I~IWd  792 (792)
                      ..++.+-++.|+|.+||
T Consensus       254 R~IlY~lsek~~v~~Y~  270 (1311)
T KOG1900|consen  254 RNILYVLSEKGTVSAYD  270 (1311)
T ss_pred             cceeeeeccCceEEEEE
Confidence            88999999999999996

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.49  E-value=52  Score=40.51  Aligned_cols=155  Identities=14%  Similarity=0.202  Sum_probs=90.8

Q ss_pred             CCCCeEEEEEc---C----CCCEEEEEeCCCeEEEEECC------C---------CceeEEecc---CCCCEEEEEECC-
Q 003842          511 STSKVICCHFS---S----DGKLLATGGHDKKAVLWHTD------T---------LKSKTNLEE---HSSLITDVRFSP-  564 (792)
Q Consensus       511 H~~~V~~lafs---p----dg~~Lasgs~Dg~I~vWdl~------t---------~~~~~~l~~---h~~~V~~i~fsp-  564 (792)
                      -..+|..|+|.   .    ..++|++= ....+.|+...      .         ...+..+..   ......+|+|+| 
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            45678888887   2    22355554 35566776611      1         123333432   345678999999 


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCC----CceeEEecccC----------CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 003842          565 SMPRLATSSFDKTVRVWDADNP----GYSLRTFMGHS----------ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG  630 (792)
Q Consensus       565 dg~~Lasgs~Dg~V~IWdl~s~----~~~i~~~~~h~----------~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~  630 (792)
                      +...||+....|...|||+...    ...+.....+.          ..-..|.|.++.+.+| .++ ...+.++|+++.
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~~  234 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFESN  234 (765)
T ss_pred             ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCCC
Confidence            4568999999999999999211    11121111122          2234788987766666 443 677899999987


Q ss_pred             eeEE-Eee----CCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003842          631 SCTR-VFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAET  668 (792)
Q Consensus       631 ~~~~-~~~----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t  668 (792)
                      .... ...    ..+..+.-++.....+..-....|..+|+..
T Consensus       235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             CccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence            6543 221    2344555555533333333447777777776

These proteins are found in fungi.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.43  E-value=28  Score=37.30  Aligned_cols=185  Identities=15%  Similarity=0.128  Sum_probs=0.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCceeEEec------cCCCCEEEEEECCCCC------eE
Q 003842          514 KVICCHFSSDGKLLATGGHD------------KKAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMP------RL  569 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~D------------g~I~vWdl~t~~~~~~l~------~h~~~V~~i~fspdg~------~L  569 (792)
                      .|..+....++++-+.=+.-            -+|.+||+.+.+.++++.      .....+.++++.....      ..
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE


Q ss_pred             EEEeCCCcEEEEeCCCCCceeEEeccc-------------------CCCeEEEEEcC---CCCeEEEEEeCCCcEEEEEc
Q 003842          570 ATSSFDKTVRVWDADNPGYSLRTFMGH-------------------SASVMSLDFHP---NKDDLICSCDGDGEIRYWSI  627 (792)
Q Consensus       570 asgs~Dg~V~IWdl~s~~~~i~~~~~h-------------------~~~V~sl~fsp---d~~~ll~sgs~Dg~I~iwdl  627 (792)
                      ++=+..+-|.|||+.+ +...+.+..+                   ...+..++.+|   +++.+++..-....++--..
T Consensus        82 ItD~~~~glIV~dl~~-~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T  160 (287)
T PF03022_consen   82 ITDSGGPGLIVYDLAT-GKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPT  160 (287)
T ss_dssp             EEETTTCEEEEEETTT-TEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEH
T ss_pred             EeCCCcCcEEEEEccC-CcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEH


Q ss_pred             ---------------CCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-----CeEEEEecCC-CCCeEEEE
Q 003842          628 ---------------NNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-----QACRLSLQGH-TKPIDSVC  686 (792)
Q Consensus       628 ---------------~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t-----~~~~~~l~~h-~~~V~sv~  686 (792)
                                     ..-+.+.........+++.+.+..+++--..+.|..|+..+     ...+...... -.++..+.
T Consensus       161 ~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~  240 (287)
T PF03022_consen  161 SVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK  240 (287)
T ss_dssp             HHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred             HHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee


Q ss_pred             EcC--CCCEEEEEeC
Q 003842          687 WDP--SGELLASVSE  699 (792)
Q Consensus       687 ~sp--dg~~Las~s~  699 (792)
                      +.+  +|.+.+.+..
T Consensus       241 i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  241 IDPEGDGYLWVLSNR  255 (287)
T ss_dssp             E-T--TS-EEEEE-S
T ss_pred             eccccCceEEEEECc

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	792
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-27
2gnq_A	336	Structure Of Wdr5 Length = 336		6e-20
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-07
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-20
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		8e-20
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-07
2h9l_A	329	Wdr5delta23 Length = 329		8e-20
2h9l_A	329	Wdr5delta23 Length = 329		4e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		9e-20
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-19
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-19
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-19
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-19
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-19
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-19
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-19
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-19
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-19
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		9e-06
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-19
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		8e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-18
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-17
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		6e-17
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		6e-17
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		9e-17
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-16
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-14
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-07
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		6e-14
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		5e-06
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		6e-14
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		6e-14
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		8e-14
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		9e-14
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		3e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		9e-14
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		3e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-13
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		6e-08
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		7e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		4e-13
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		8e-08
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		8e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-11
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-11
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-11
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-11
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-09
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-11
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-11
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		5e-11
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		5e-11
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-10
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-06
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-10
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-09
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		9e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-09
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		5e-07
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-09
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-09
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-09
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-09
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-09
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-08
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-09
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-07
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		3e-09
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-07
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		3e-09
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-08
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-06
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		3e-08
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-08
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-05
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		4e-08
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		5e-08
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-08
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-06
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		9e-08
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-07
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-07
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		1e-07
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		4e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		5e-07
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-06
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-06
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-06
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-06
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		4e-06
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		3e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		4e-05
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		8e-05
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		1e-04
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		2e-04
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		7e-04
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		9e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 148/294 (50%), Gaps = 14/294 (4%)
Query: 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 561
            KE N + A +S V    FS DG+ +A+   DK   LW+ +    +T L  HSS +  V 
Sbjct: 6   VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVA 64
Query: 562 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 621
           FSP    +A++S DKTV++W+ +  G  L+T  GHS+SV  + F P+   +  + D D  
Sbjct: 65  FSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKT 121
Query: 622 IRYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH 678
           ++ W+  NG   +   G ++    + F P  G+ +A+A+++    L         +L GH
Sbjct: 122 VKLWN-RNGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRNGQLLQTLTGH 179
Query: 679 TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 737
           +  +  V + P G+ +AS S+D +V++W       G+ +  L+ + +      F P   +
Sbjct: 180 SSSVWGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQT 235
Query: 738 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           +      ++++LWN +     TLT H   +  +A   +   +ASAS DK VKLW
Sbjct: 236 IASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 571
           T  V    FS +G+ LA+   DK   +W     K +  +  H   I+DV +S     L +
Sbjct: 47  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 572 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 631
           +S DKT+++WD  + G  L+T  GHS  V   +F+P + +LI S   D  +R W +  G 
Sbjct: 107 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 164
Query: 632 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 687
           C +     +   + + F       ++++ + +  I D  +  C  +L      P+  V +
Sbjct: 165 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 224
Query: 688 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 743
            P+G+ +LA+  ++++++W     S+G+C+   + + N+ + C+   F  T    +V G 
Sbjct: 225 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 280
Query: 744 YQSL-ELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 792
             +L  +WN+   + +  L  H  ++ + A       +ASA+  +DK +KLWK
Sbjct: 281 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 333

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 670 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 710
           A + +L GHTK + SV + P+GE LAS S D  +++W    G                  
Sbjct: 38  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 97
Query: 711 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 748
                                S G+C+  L  + N    C F+P   +L+V G + +S+ 
Sbjct: 98  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 156
Query: 749 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           +W++   K + TL AH   ++A+  + +   + S+S+D   ++W
Sbjct: 157 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 571
           T  V    FS +G+ LA+   DK   +W     K +  +  H   I+DV +S     L +
Sbjct: 45  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 572 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 631
           +S DKT+++WD  + G  L+T  GHS  V   +F+P + +LI S   D  +R W +  G 
Sbjct: 105 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 632 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 687
           C +     +   + + F       ++++ + +  I D  +  C  +L      P+  V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 688 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 743
            P+G+ +LA+  ++++++W     S+G+C+   + + N+ + C+   F  T    +V G 
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 278
Query: 744 YQSL-ELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 792
             +L  +WN+   + +  L  H  ++ + A       +ASA+  +DK +KLWK
Sbjct: 279 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 670 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 710
           A + +L GHTK + SV + P+GE LAS S D  +++W    G                  
Sbjct: 36  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 95
Query: 711 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 748
                                S G+C+  L  + N    C F+P   +L+V G + +S+ 
Sbjct: 96  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 154
Query: 749 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           +W++   K + TL AH   ++A+  + +   + S+S+D   ++W
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 571
           T  V    FS +G+ LA+   DK   +W     K +  +  H   I+DV +S     L +
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 572 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 631
           +S DKT+++WD  + G  L+T  GHS  V   +F+P + +LI S   D  +R W +  G 
Sbjct: 89  ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 632 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 687
           C +     +   + + F       ++++ + +  I D  +  C  +L      P+  V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 688 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 743
            P+G+ +LA+  ++++++W     S+G+C+   + + N+ + C+   F  T    +V G 
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 744 YQSL-ELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 792
             +L  +WN+   + +  L  H  ++ + A       +ASA+  +DK +KLWK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 670 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 710
           A + +L GHTK + SV + P+GE LAS S D  +++W    G                  
Sbjct: 20  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 711 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 748
                                S G+C+  L  + N    C F+P   +L+V G + +S+ 
Sbjct: 80  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 138
Query: 749 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           +W++   K + TL AH   ++A+  + +   + S+S+D   ++W
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 571
           T  V    FS +G+ LA+   DK   +W     K +  +  H   I+DV +S     L +
Sbjct: 40  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 99
Query: 572 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 631
           +S DKT+++WD  + G  L+T  GHS  V   +F+P + +LI S   D  +R W +  G 
Sbjct: 100 ASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 157
Query: 632 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 687
           C +     +   + + F       ++++ + +  I D  +  C  +L      P+  V +
Sbjct: 158 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 217
Query: 688 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 743
            P+G+ +LA+  ++++++W     S+G+C+   + + N+ + C+   F  T    +V G 
Sbjct: 218 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 273
Query: 744 YQSL-ELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 792
             +L  +WN+   + +  L  H  ++ + A       +ASA+  +DK +KLWK
Sbjct: 274 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 326

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 670 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 710
           A + +L GHTK + SV + P+GE LAS S D  +++W    G                  
Sbjct: 31  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 90
Query: 711 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 748
                                S G+C+  L  + N    C F+P   +L+V G + +S+ 
Sbjct: 91  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 149
Query: 749 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           +W++   K + TL AH   ++A+  + +   + S+S+D   ++W
Sbjct: 150 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 571
           T  V    FS +G+ LA+   DK   +W     K +  +  H   I+DV +S     L +
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 572 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 631
           +S DKT+++WD  + G  L+T  GHS  V   +F+P + +LI S   D  +R W +  G 
Sbjct: 89  ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 632 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 687
           C +     +   + + F       ++++ + +  I D  +  C  +L      P+  V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 688 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 743
            P+G+ +LA+  ++++++W     S+G+C+   + + N+ + C+   F  T    +V G 
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 744 YQSL-ELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 792
             +L  +WN+   + +  L  H  ++ + A       +ASA+  +DK +KLWK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 670 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 710
           A + +L GHTK + SV + P+GE LAS S D  +++W    G                  
Sbjct: 20  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 711 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 748
                                S G+C+  L  + N    C F+P   +L+V G + +S+ 
Sbjct: 80  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 138
Query: 749 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           +W++   K + TL AH   ++A+  + +   + S+S+D   ++W
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 571
           T  V    FS +G+ LA+   DK   +W     K +  +  H   I+DV +S     L +
Sbjct: 28  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 87
Query: 572 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 631
           +S DKT+++WD  + G  L+T  GHS  V   +F+P + +LI S   D  +R W +  G 
Sbjct: 88  ASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 145
Query: 632 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 687
           C +     +   + + F       ++++ + +  I D  +  C  +L      P+  V +
Sbjct: 146 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 205
Query: 688 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 743
            P+G+ +LA+  ++++++W     S+G+C+   + + N+ + C+   F  T    +V G 
Sbjct: 206 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 261
Query: 744 YQSL-ELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 792
             +L  +WN+   + +  L  H  ++ + A       +ASA+  +DK +KLWK
Sbjct: 262 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 314

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 670 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 710
           A + +L GHTK + SV + P+GE LAS S D  +++W    G                  
Sbjct: 19  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 78
Query: 711 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 748
                                S G+C+  L  + N    C F+P   +L+V G + +S+ 
Sbjct: 79  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 137
Query: 749 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           +W++   K + TL AH   ++A+  + +   + S+S+D   ++W
Sbjct: 138 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 140/285 (49%), Gaps = 18/285 (6%)
Query: 520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579
           FS +G+ LA+   DK   +W     K +  +  H   I+DV +S     L ++S DKT++
Sbjct: 31  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90
Query: 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 639
           +WD  + G  L+T  GHS  V   +F+P + +LI S   D  +R W +  G C +     
Sbjct: 91  IWDV-SSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 640 T---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCWDPSGE-LL 694
           +   + + F       ++++ + +  I D  +  C  +L      P+  V + P+G+ +L
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 695 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGCYQSL-ELW 750
           A+  ++++++W     S+G+C+   + + N+ + C+   F  T    +V G   +L  +W
Sbjct: 209 AATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 751 NMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 792
           N+   + +  L  H  ++ + A       +ASA+  +DK +KLWK
Sbjct: 265 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 670 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 710
           A + +L GHTK + SV + P+GE LAS S D  +++W    G                  
Sbjct: 14  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 711 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 748
                                S G+C+  L  + N    C F+P   +L+V G + +S+ 
Sbjct: 74  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 132
Query: 749 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           +W++   K + TL AH   ++A+  + +   + S+S+D   ++W
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 140/285 (49%), Gaps = 18/285 (6%)
Query: 520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579
           FS +G+ LA+   DK   +W     K +  +  H   I+DV +S     L ++S DKT++
Sbjct: 30  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 89
Query: 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 639
           +WD  + G  L+T  GHS  V   +F+P + +LI S   D  +R W +  G C +     
Sbjct: 90  IWDV-SSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 147
Query: 640 T---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCWDPSGE-LL 694
           +   + + F       ++++ + +  I D  +  C  +L      P+  V + P+G+ +L
Sbjct: 148 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 207
Query: 695 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGCYQSL-ELW 750
           A+  ++++++W     S+G+C+   + + N+ + C+   F  T    +V G   +L  +W
Sbjct: 208 AATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVYIW 263
Query: 751 NMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 792
           N+   + +  L  H  ++ + A       +ASA+  +DK +KLWK
Sbjct: 264 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 308

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 670 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 710
           A + +L GHTK + SV + P+GE LAS S D  +++W    G                  
Sbjct: 13  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 72
Query: 711 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 748
                                S G+C+  L  + N    C F+P   +L+V G + +S+ 
Sbjct: 73  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 131
Query: 749 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           +W++   K + TL AH   ++A+  + +   + S+S+D   ++W
Sbjct: 132 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 571
           T  V    FS +G+ LA+   DK   +W     K +  +  H   I+DV +S     L +
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 572 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 631
           +S DKT+++WD  + G  L+T  GHS  V   +F+P + +LI S   D  +R W +  G 
Sbjct: 89  ASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 632 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 687
           C +     +   + + F       ++++ + +  I D  +  C  +L      P+  V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 688 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 743
            P+G+ +LA+  ++++++W     S+G+C+   + + N+ + C+   F  T    +V G 
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 744 YQSL-ELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 792
             +L  +WN+   + +  L  H  ++ + A       +ASA+  +DK +KLWK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 670 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 710
           A + +L GHTK + SV + P+GE LAS S D  +++W    G                  
Sbjct: 20  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 711 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 748
                                S G+C+  L  + N    C F+P   +L+V G + +S+ 
Sbjct: 80  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 138
Query: 749 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           +W++   K + TL AH   ++A+  + +   + S+S+D   ++W
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 140/285 (49%), Gaps = 18/285 (6%)
Query: 520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579
           FS +G+ LA+   DK   +W     K +  +  H   I+DV +S     L ++S DKT++
Sbjct: 32  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 91
Query: 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 639
           +WD  + G  L+T  GHS  V   +F+P + +LI S   D  +R W +  G C +     
Sbjct: 92  IWDV-SSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 149
Query: 640 T---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCWDPSGE-LL 694
           +   + + F       ++++ + +  I D  +  C  +L      P+  V + P+G+ +L
Sbjct: 150 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 209
Query: 695 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGCYQSL-ELW 750
           A+  ++++++W     S+G+C+   + + N+ + C+   F  T    +V G   +L  +W
Sbjct: 210 AATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVYIW 265
Query: 751 NMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 792
           N+   + +  L  H  ++ + A       +ASA+  +DK +KLWK
Sbjct: 266 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 310

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 670 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 710
           A + +L GHTK + SV + P+GE LAS S D  +++W    G                  
Sbjct: 15  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 74
Query: 711 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 748
                                S G+C+  L  + N    C F+P   +L+V G + +S+ 
Sbjct: 75  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 133
Query: 749 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           +W++   K + TL AH   ++A+  + +   + S+S+D   ++W
Sbjct: 134 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 140/285 (49%), Gaps = 18/285 (6%)
Query: 520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579
           FS +G+ LA+   DK   +W     K +  +  H   I+DV +S     L ++S DKT++
Sbjct: 31  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90
Query: 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 639
           +WD  + G  L+T  GHS  V   +F+P + +LI S   D  +R W +  G C +     
Sbjct: 91  IWDV-SSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 640 T---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCWDPSGE-LL 694
           +   + + F       ++++ + +  I D  +  C  +L      P+  V + P+G+ +L
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 695 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGCYQSL-ELW 750
           A+  ++++++W     S+G+C+   + + N+ + C+   F  T    +V G   +L  +W
Sbjct: 209 AATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 751 NMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 792
           N+   + +  L  H  ++ + A       +ASA+  +DK +KLWK
Sbjct: 265 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 670 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 710
           A + +L GHTK + SV + P+GE LAS S D  +++W    G                  
Sbjct: 14  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 711 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 748
                                S G+C+  L  + N    C F+P   +L+V G + +S+ 
Sbjct: 74  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 132
Query: 749 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           +W++   K + TL AH   ++A+  + +   + S+S+D   ++W
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 140/285 (49%), Gaps = 18/285 (6%)
Query: 520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579
           FS +G+ LA+   DK   +W     K +  +  H   I+DV +S     L ++S DKT++
Sbjct: 27  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 86
Query: 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 639
           +WD  + G  L+T  GHS  V   +F+P + +LI S   D  +R W +  G C +     
Sbjct: 87  IWDV-SSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 144
Query: 640 T---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCWDPSGE-LL 694
           +   + + F       ++++ + +  I D  +  C  +L      P+  V + P+G+ +L
Sbjct: 145 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 204
Query: 695 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGCYQSL-ELW 750
           A+  ++++++W     S+G+C+   + + N+ + C+   F  T    +V G   +L  +W
Sbjct: 205 AATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVYIW 260
Query: 751 NMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 792
           N+   + +  L  H  ++ + A       +ASA+  +DK +KLWK
Sbjct: 261 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 670 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 710
           A + +L GHTK + SV + P+GE LAS S D  +++W    G                  
Sbjct: 10  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 69
Query: 711 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 748
                                S G+C+  L  + N    C F+P   +L+V G + +S+ 
Sbjct: 70  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 128
Query: 749 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           +W++   K + TL AH   ++A+  + +   + S+S+D   ++W
Sbjct: 129 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 120/275 (43%), Gaps = 26/275 (9%)
Query: 520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579
           F   GKLLA+   D    LW     +    +  H   ++ V   P+   + ++S DKT++
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217
Query: 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKG 638
           +W+    GY ++TF GH   V  +   PN+D  LI SC  D  +R W +    C      
Sbjct: 218 MWEVQT-GYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKEC------ 268
Query: 639 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 698
             A++R   H+   ++ A E+  S + +E         G   P           LL+   
Sbjct: 269 -KAELREHRHVVECISWAPESSYSSI-SEATGSETKKSGKPGPF----------LLSGSR 316
Query: 699 EDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758
           + ++++W V   S G C+  L  + N     +FH     +L     ++L +W+    + M
Sbjct: 317 DKTIKMWDV---STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 373
Query: 759 -TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792
            TL AHE  + +L       YV + S D+ VK+W+
Sbjct: 374 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 140/285 (49%), Gaps = 18/285 (6%)
Query: 520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579
           FS +G+ LA+   DK   +W     K +  +  H   I+DV +S     L ++S DKT++
Sbjct: 34  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 639
           +WD  + G  L+T  GHS  V   +F+P + +LI S   D  +R W +  G C +     
Sbjct: 94  IWDV-SSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTLPAH 151
Query: 640 T---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCWDPSGE-LL 694
           +   + + F       ++++ + +  I D  +  C  +L      P+  V + P+G+ +L
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 695 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGCYQSL-ELW 750
           A+  ++++++W     S+G+C+   + + N+ + C+   F  T    +V G   ++  +W
Sbjct: 212 AATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 751 NMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 792
           N+   + +  L  H  ++ + A       +ASA+  +DK +KLWK
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 43/164 (26%)
Query: 670 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 710
           A   +L GHTK + SV + P+GE LAS S D  +++W    G                  
Sbjct: 17  ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 711 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 748
                                S G+C+  L  + N    C F+P   +L+V G + +S+ 
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 135
Query: 749 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           +W++     + TL AH   ++A+  + +   + S+S+D   ++W
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 571
           T  V    FS +G+ LA+   DK   +W     K +  +  H   I+DV +S     L +
Sbjct: 26  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 572 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 631
           +S DKT+++WD  + G  L+T  GHS  V   +F+P + +LI S   D  +R W +  G 
Sbjct: 86  ASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 632 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 687
           C +     +   + + F       ++++ + +  I D  +  C  +L      P+  V +
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 688 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 743
            P+G+ +LA+  ++ +++W     S+G+C+   + + N+ + C+   F  T    +V G 
Sbjct: 204 SPNGKYILAATLDNDLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 259
Query: 744 YQSL-ELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 792
             ++  +WN+   + +  L  H  ++ + A       +ASA+  +DK +KLWK
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 43/164 (26%)
Query: 670 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 710
           A   +L GHTK + SV + P+GE LAS S D  +++W    G                  
Sbjct: 17  ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 711 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 748
                                S G+C+  L  + N    C F+P   +L+V G + +S+ 
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 135
Query: 749 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           +W++     + TL AH   ++A+  + +   + S+S+D   ++W
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 89.4 bits (220), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 150/317 (47%), Gaps = 25/317 (7%)
Query: 491 GRGMDVSQ---GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK 547
           GRG +  +      F  A   +A +S      FS +G+ LA    DK   +W     K +
Sbjct: 6   GRGSEFVKPNYALKFTLAGHTKAVSS----VKFSPNGEWLAASSADKLIKIWGAYDGKFE 61
Query: 548 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP 607
             +  H   I+DV +S     L ++S DKT+++WD  + G  L+T  GHS  V   +F+P
Sbjct: 62  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNP 120
Query: 608 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSIL 664
            + +LI S   D  +R W +  G C +     +   + + F       ++++ + +  I 
Sbjct: 121 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 665 DAETQACRLSL-QGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN 722
           D  +  C  +L      P+  V + P+G+ +LA+  ++++++W     S+G+C+   + +
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGH 236
Query: 723 GNKFHSCV---FHPTYPSLLVIGCYQSL-ELWNMSENKTM-TLTAHEGLIAALAVSTETG 777
            N+ + C+   F  T    +V G   +L  +WN+   + +  L  H  ++ + A      
Sbjct: 237 KNEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 778 YVASAS--HDKFVKLWK 792
            +ASA+  +DK +KLWK
Sbjct: 296 IIASAALENDKTIKLWK 312

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 140/327 (42%), Gaps = 50/327 (15%)
Query: 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD------------TLKSKTNLEEHSS---- 555
           TS V C  FS+DG+ LATG +    V   +D              K   NL   SS    
Sbjct: 64  TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD 123
Query: 556 -LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 614
             I  V FSP    LAT + D+ +R+WD +N    +    GH   + SLD+ P+ D L+ 
Sbjct: 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFPSGDKLV- 181
Query: 615 SCDGDGEIRYWSINNGSC--TRVFKGGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQAC 671
           S  GD  +R W +  G C  T   + G   +   P  G+Y+AA + +  V + D+ET   
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241
Query: 672 RLSLQ-------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE---------GE 714
              L        GH   + SV +   G+ + S S D SV++W + + +          G 
Sbjct: 242 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 301
Query: 715 CVHELSCNGNK-FHSCVFHPTYPSLLVIGCY-QSLELWN-MSENKTMTLTAHEGLIAALA 771
           C  E++  G+K F   V        ++ G   + +  W+  S N  + L  H   + ++A
Sbjct: 302 C--EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 359
Query: 772 VST------ETGYVASASHDKFVKLWK 792
           V+       E    A+ S D   ++WK
Sbjct: 360 VANGSSLGPEYNVFATGSGDCKARIWK 386

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 151/317 (47%), Gaps = 25/317 (7%)
Query: 491 GRGMDVSQ---GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK 547
           GRG +  +      F  A   +A +S      FS +G+ LA+   DK   +W     K +
Sbjct: 6   GRGSEFVKPNYALKFTLAGHTKAVSS----VKFSPNGEWLASSSADKLIKIWGAYDGKFE 61
Query: 548 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP 607
             +  H   I+DV +S     L ++S DKT+++WD  + G  L+T  GHS  V   +F+P
Sbjct: 62  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNP 120
Query: 608 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSIL 664
            + +LI S   D  +R W +  G C +     +   + + F       ++++ + +  I 
Sbjct: 121 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 665 DAETQACRLSL-QGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN 722
           D  +  C  +L      P+  V + P+G+ +LA+  ++++++W     S+G+C+   + +
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGH 236
Query: 723 GNKFHSCV---FHPTYPSLLVIGCYQSL-ELWNMSENKTM-TLTAHEGLIAALAVSTETG 777
            N+ + C+   F  T    +V G   +L  +WN+   + +  L  H  ++ + A      
Sbjct: 237 KNEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 778 YVASAS--HDKFVKLWK 792
            +ASA+  +DK +KL+K
Sbjct: 296 IIASAALENDKTIKLYK 312

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 135/283 (47%), Gaps = 23/283 (8%)
Query: 515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 574
           + C  F   G  + +G  D    +W   T K    L  H+  +   +   ++  + + S 
Sbjct: 122 ITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGST 177
Query: 575 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 634
           D+T++VW+A+  G  + T  GH+++V  +  H  +   + S   D  +R W I  G C  
Sbjct: 178 DRTLKVWNAET-GECIHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLH 233
Query: 635 VFKGGTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL 693
           V  G  A +R   + GR + + A + +V + D ET+ C  +LQGHT  + S+ +D  G  
Sbjct: 234 VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIH 291
Query: 694 LASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 752
           + S S D S+RVW V +G+   C+H L+  G++  +         L+      ++++W++
Sbjct: 292 VVSGSLDTSIRVWDVETGN---CIHTLT--GHQSLTSGMELKDNILVSGNADSTVKIWDI 346
Query: 753 SENKTM-TL---TAHEGLIAALAVSTETGYVASASHDKFVKLW 791
              + + TL     H+  +  L  +    +V ++S D  VKLW
Sbjct: 347 KTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLW 387

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 85.9 bits (211), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 151/317 (47%), Gaps = 25/317 (7%)
Query: 491 GRGMDVSQ---GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK 547
           GRG +  +      F  A   +A +S      FS +G+ LA+   DK   +W     K +
Sbjct: 6   GRGSEFVKPNYALKFTLAGHTKAVSS----VKFSPNGEWLASSSADKLIKIWGAYDGKFE 61
Query: 548 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP 607
             +  H   I+DV +S     L ++S DKT+++WD  + G  L+T  GHS  V   +F+P
Sbjct: 62  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNP 120
Query: 608 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSIL 664
            + +LI S   D  +R W +  G C +     +   + + F       ++++ + +  I 
Sbjct: 121 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 665 DAETQACRLSL-QGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN 722
           D  +  C  +L      P+  V + P+G+ +LA+  ++++++W     S+G+C+   + +
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGH 236
Query: 723 GNKFHSCV---FHPTYPSLLVIGCYQSL-ELWNMSENKTM-TLTAHEGLIAALAVSTETG 777
            N+ + C+   F  T    +V G   +L  +WN+   + +  L  H  ++ + A      
Sbjct: 237 KNEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 778 YVASAS--HDKFVKLWK 792
            +ASA+  +DK +KL+K
Sbjct: 296 IIASAALENDKTIKLFK 312

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 93/194 (47%), Gaps = 14/194 (7%)
Query: 612 LICSCDGDGEIRYWSINNGS--CTRVFKGG----TAQMRFQPHLGRYLAAAAENVVSILD 665
           L+ SC GD  IR W     S  C  V   G      ++ + P  G YLA+A+ +  + + 
Sbjct: 30  LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATTCIW 88
Query: 666 AETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 721
            + Q    C  +L+GH   + SV W PSG LLA+ S D SV VW V    E ECV  L+ 
Sbjct: 89  KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148
Query: 722 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGY 778
           +       V+HP+   L       +++L+   E+  +   TL  HE  + +LA       
Sbjct: 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR 208
Query: 779 VASASHDKFVKLWK 792
           +AS S D+ V++W+
Sbjct: 209 LASCSDDRTVRIWR 222

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 98/199 (49%), Gaps = 15/199 (7%)
Query: 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 571
           T  V+C  +  D +++ TG  D    +W  +T +    L  H   +  +RF+  M  + T
Sbjct: 173 TGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVT 228
Query: 572 SSFDKTVRVWDADNP-GYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 629
            S D+++ VWD  +P   +L R  +GH A+V  +DF    D  I S  GD  I+ W+ + 
Sbjct: 229 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTST 285
Query: 630 GSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVC 686
               R   G   G A ++++  L   ++ +++N + + D E  AC   L+GH + +  + 
Sbjct: 286 CEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR 343
Query: 687 WDPSGELLASVSEDSVRVW 705
           +D +  +++   +  ++VW
Sbjct: 344 FD-NKRIVSGAYDGKIKVW 361

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 651 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG 710
           + ++   +N + I D  T  C+  L GHT  +  + +D    +  S S+ +VRVW V +G
Sbjct: 145 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS-SDSTVRVWDVNTG 203
Query: 711 SEGECVHELSCNGNKFHSC--VFHPTYPSLLVIGCYQ--SLELWNMSENKTMTL----TA 762
              E ++ L       H C  V H  + + +++ C +  S+ +W+M+    +TL      
Sbjct: 204 ---EMLNTL------IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG 254
Query: 763 HEGLIAALAVSTETGYVASASHDKFVKLW 791
           H    A   V  +  Y+ SAS D+ +K+W
Sbjct: 255 HRA--AVNVVDFDDKYIVSASGDRTIKVW 281

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 122/259 (47%), Gaps = 26/259 (10%)
Query: 550 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 609
           LE HS+ ++DV  S +     ++S+D ++R+W+  N G     F+GH+  V+S+ F P+ 
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQN-GQCQYKFLGHTKDVLSVAFSPDN 121
Query: 610 DDLICSCDGDGEIRYWSINNGSCTRVFKGG-----TAQMRFQPHLGR--YLAAAAENVVS 662
             ++ S   D  +R W++  G C      G      + +RF P L     ++   +N+V 
Sbjct: 122 RQIV-SGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 663 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSC 721
           + D  T      L+GHT  + SV   P G L AS  +D V R+W +   ++GE + E++ 
Sbjct: 180 VWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL---TKGEALSEMAA 236
Query: 722 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT---AHEG------LIAALAV 772
            G   +   F P     +     + + ++++ ENK + +     H+G         ++A 
Sbjct: 237 -GAPINQICFSPNR-YWMCAATEKGIRIFDL-ENKDIIVELAPEHQGSKKIVPECVSIAW 293
Query: 773 STETGYVASASHDKFVKLW 791
           S +   + S   D  +++W
Sbjct: 294 SADGSTLYSGYTDNVIRVW 312

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 98/211 (46%), Gaps = 11/211 (5%)
Query: 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 563
           E  S++ + + V    F +    +  G  D +  +++ +T +   + E H   I  +   
Sbjct: 47  EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106
Query: 564 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 623
           P+ P + + S D TV++W+ +N     +TF GH   VM + F+P       S   D  ++
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 624 YWSINNGSCTRVFKGGTAQMRFQPHLGRY--------LAAAAENVVSILDAETQACRLSL 675
            WS+  G  T  F   T Q R   ++  Y        + A+ +  + I D +T++C  +L
Sbjct: 167 VWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Query: 676 QGHTKPIDSVCWDPSGELLASVSED-SVRVW 705
           +GH   +    + P+  ++ S SED ++++W
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 98/211 (46%), Gaps = 11/211 (5%)
Query: 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 563
           E  S++ + + V    F +    +  G  D +  +++ +T +   + E H   I  +   
Sbjct: 47  EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106
Query: 564 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 623
           P+ P + + S D TV++W+ +N     +TF GH   VM + F+P       S   D  ++
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 624 YWSINNGSCTRVFKGGTAQMRFQPHLGRY--------LAAAAENVVSILDAETQACRLSL 675
            WS+  G  T  F   T Q R   ++  Y        + A+ +  + I D +T++C  +L
Sbjct: 167 VWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Query: 676 QGHTKPIDSVCWDPSGELLASVSED-SVRVW 705
           +GH   +    + P+  ++ S SED ++++W
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 591 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 650
           +TF   S  V  +DFHP +  ++ +    G +  W+       R  +     +R    + 
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 651 R--YLAAAAENV-VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT 706
           R  ++   +++  + + +  T    +  + H   I S+   P+   + S S+D +V++W 
Sbjct: 66  RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW- 124
Query: 707 VGSGSEGECVHELSCNGNK-FHSCV-FHPTYPSLLVIGCY-QSLELWNMSE---NKTMTL 760
                E     E +  G++ F  CV F+P  PS    GC  +++++W++ +   N T+T 
Sbjct: 125 ---NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 761 TAHEGL-IAALAVSTETGYVASASHDKFVKLW 791
               G+         +  Y+ +AS D  +K+W
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 98/211 (46%), Gaps = 11/211 (5%)
Query: 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 563
           E  S++ + + V    F +    +  G  D +  +++ +T +   + E H   I  +   
Sbjct: 47  EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106
Query: 564 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 623
           P+ P + + S D TV++W+ +N     +TF GH   VM + F+P       S   D  ++
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 624 YWSINNGSCTRVFKGGTAQMRFQPHLGRY--------LAAAAENVVSILDAETQACRLSL 675
            WS+  G  T  F   T Q R   ++  Y        + A+ +  + I D +T++C  +L
Sbjct: 167 VWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Query: 676 QGHTKPIDSVCWDPSGELLASVSED-SVRVW 705
           +GH   +    + P+  ++ S SED ++++W
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 591 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 650
           +TF   S  V  +DFHP +  ++ +    G +  W+       R  +     +R    + 
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 651 R--YLAAAAENV-VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT 706
           R  ++   +++  + + +  T    +  + H   I S+   P+   + S S+D +V++W 
Sbjct: 66  RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW- 124
Query: 707 VGSGSEGECVHELSCNGNK-FHSCV-FHPTYPSLLVIGCY-QSLELWNMSE---NKTMTL 760
                E     E +  G++ F  CV F+P  PS    GC  +++++W++ +   N T+T 
Sbjct: 125 ---NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 761 TAHEGL-IAALAVSTETGYVASASHDKFVKLW 791
               G+         +  Y+ +AS D  +K+W
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 98/211 (46%), Gaps = 11/211 (5%)
Query: 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 563
           E  S++ + + V    F +    +  G  D +  +++ +T +   + E H   I  +   
Sbjct: 47  EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106
Query: 564 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 623
           P+ P + + S D TV++W+ +N     +TF GH   VM + F+P       S   D  ++
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 624 YWSINNGSCTRVFKGGTAQMRFQPHLGRY--------LAAAAENVVSILDAETQACRLSL 675
            WS+  G  T  F   T Q R   ++  Y        + A+ +  + I D +T++C  +L
Sbjct: 167 VWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Query: 676 QGHTKPIDSVCWDPSGELLASVSED-SVRVW 705
           +GH   +    + P+  ++ S SED ++++W
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 591 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 650
           +TF   S  V  +DFHP +  ++ +    G +  W+       R  +     +R    + 
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 651 R--YLAAAAENV-VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT 706
           R  ++   +++  + + +  T    +  + H   I S+   P+   + S S+D +V++W 
Sbjct: 66  RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW- 124
Query: 707 VGSGSEGECVHELSCNGNK-FHSCV-FHPTYPSLLVIGCY-QSLELWNMSE---NKTMTL 760
                E     E +  G++ F  CV F+P  PS    GC  +++++W++ +   N T+T 
Sbjct: 125 ---NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 761 TAHEGL-IAALAVSTETGYVASASHDKFVKLW 791
               G+         +  Y+ +AS D  +K+W
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 101/219 (46%), Gaps = 24/219 (10%)
Query: 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSP--SMPR 568
           T  V+   FSSD + + +G  DK   LW+T    K     E HS  ++ VRFSP  S P 
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187
Query: 569 LATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWS 626
           + +  +DK V+VW+  N    L+T  +GH+  + ++   P  D  +C+  G DG+   W 
Sbjct: 188 IVSCGWDKLVKVWNLANC--KLKTNHIGHTGYLNTVTVSP--DGSLCASGGKDGQAMLWD 243
Query: 627 INNGSCTRVFKGG--TAQMRFQPHLGRY-LAAAAENVVSILDAETQAC-------RLSLQ 676
           +N G       GG     + F P+  RY L AA    + I D E +          +S  
Sbjct: 244 LNEGKHLYTLDGGDIINALCFSPN--RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 301
Query: 677 GHTKP--IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSE 712
              +P    S+ W   G+ L A  +++ VRVW V  G+ 
Sbjct: 302 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 49/299 (16%)
Query: 526 LLATGGHDKKAVLWHTDTLKSKTN-------LEEHSSLITDVRFSPSMPRLATSSFDKTV 578
           ++ +   DK  ++W     + +TN       L  HS  ++DV  S       + S+D T+
Sbjct: 53  MILSASRDKTIIMWKLT--RDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL 110
Query: 579 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 638
           R+WD    G + R F+GH+  V+S+ F  +   ++ S   D  I+ W+   G C    + 
Sbjct: 111 RLWDL-TTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN-TLGVCKYTVQD 167
Query: 639 -----GTAQMRFQPHLGR--YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 691
                  + +RF P+      ++   + +V + +      + +  GHT  +++V   P G
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 227
Query: 692 ELLASVSED-SVRVWTVGSGSE------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 744
            L AS  +D    +W +  G        G+ ++ L  + N++  C    T P        
Sbjct: 228 SLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA--ATGP-------- 277
Query: 745 QSLELWNMSENKTMTLTAHEGLIA-----------ALAVSTETGYVASASHDKFVKLWK 792
            S+++W++ E K +     + +I+           +LA S +   + +   D  V++W+
Sbjct: 278 -SIKIWDL-EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 24/217 (11%)
Query: 592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI-----NNGSCTRVFKGGTAQMRFQ 646
           T  GH+  V  +   P   D+I S   D  I  W +     N G   R  +G      F 
Sbjct: 33  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG---HSHFV 89
Query: 647 PHL-----GRY-LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 700
             +     G++ L+ + +  + + D  T        GHTK + SV +      + S S D
Sbjct: 90  SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 149
Query: 701 -SVRVWTVGSGSEGECVHELSCNGN-KFHSCV-FHPTYPSLLVIGCY--QSLELWNMSEN 755
            ++++W     + G C + +    + ++ SCV F P   + +++ C   + +++WN++  
Sbjct: 150 KTIKLW----NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205
Query: 756 KTMT-LTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           K  T    H G +  + VS +    AS   D    LW
Sbjct: 206 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 101/219 (46%), Gaps = 24/219 (10%)
Query: 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSP--SMPR 568
           T  V+   FSSD + + +G  DK   LW+T    K     E HS  ++ VRFSP  S P 
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 164
Query: 569 LATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWS 626
           + +  +DK V+VW+  N    L+T  +GH+  + ++   P  D  +C+  G DG+   W 
Sbjct: 165 IVSCGWDKLVKVWNLANC--KLKTNHIGHTGYLNTVTVSP--DGSLCASGGKDGQAMLWD 220
Query: 627 INNGSCTRVFKGG--TAQMRFQPHLGRY-LAAAAENVVSILDAETQAC-------RLSLQ 676
           +N G       GG     + F P+  RY L AA    + I D E +          +S  
Sbjct: 221 LNEGKHLYTLDGGDIINALCFSPN--RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 278
Query: 677 GHTKP--IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSE 712
              +P    S+ W   G+ L A  +++ VRVW V  G+ 
Sbjct: 279 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 317

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 49/299 (16%)
Query: 526 LLATGGHDKKAVLWHTDTLKSKTN-------LEEHSSLITDVRFSPSMPRLATSSFDKTV 578
           ++ +   DK  ++W     + +TN       L  HS  ++DV  S       + S+D T+
Sbjct: 30  MILSASRDKTIIMWKLT--RDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL 87
Query: 579 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 638
           R+WD    G + R F+GH+  V+S+ F  +   ++ S   D  I+ W+   G C    + 
Sbjct: 88  RLWDL-TTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN-TLGVCKYTVQD 144
Query: 639 -----GTAQMRFQPHLGR--YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 691
                  + +RF P+      ++   + +V + +      + +  GHT  +++V   P G
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 204
Query: 692 ELLASVSED-SVRVWTVGSGSE------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 744
            L AS  +D    +W +  G        G+ ++ L  + N++  C    T P        
Sbjct: 205 SLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA--ATGP-------- 254
Query: 745 QSLELWNMSENKTMTLTAHEGLIA-----------ALAVSTETGYVASASHDKFVKLWK 792
            S+++W++ E K +     + +I+           +LA S +   + +   D  V++W+
Sbjct: 255 -SIKIWDL-EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 311

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 24/217 (11%)
Query: 592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI-----NNGSCTRVFKGGTAQMRFQ 646
           T  GH+  V  +   P   D+I S   D  I  W +     N G   R  +G      F 
Sbjct: 10  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG---HSHFV 66
Query: 647 PHL-----GRY-LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 700
             +     G++ L+ + +  + + D  T        GHTK + SV +      + S S D
Sbjct: 67  SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 126
Query: 701 -SVRVWTVGSGSEGECVHELSCNGN-KFHSCV-FHPTYPSLLVIGC--YQSLELWNMSEN 755
            ++++W     + G C + +    + ++ SCV F P   + +++ C   + +++WN++  
Sbjct: 127 KTIKLW----NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 182
Query: 756 KTMT-LTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           K  T    H G +  + VS +    AS   D    LW
Sbjct: 183 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 128/305 (41%), Gaps = 25/305 (8%)
Query: 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 567
           VR  T  V    FS DG+ +A+ G DK   ++  +T +   +++ H   +    FS    
Sbjct: 618 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 677
Query: 568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDGEIRYW 625
            +AT S DK V++WD+   G  + T+  HS  V    F  NK +  L+ +   D  ++ W
Sbjct: 678 YIATCSADKKVKIWDS-ATGKLVHTYDEHSEQVNCCHF-TNKSNHLLLATGSNDFFLKLW 735
Query: 626 SINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH---- 678
            +N   C     G T  +   RF P      + +A+  + + D  +   R S+       
Sbjct: 736 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 795
Query: 679 --------TKPIDSVC-WDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSC 729
                    + I   C W   G+ +   +++ V ++ + +      +H  + + +    C
Sbjct: 796 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH--TGHHSTIQYC 853
Query: 730 VFHPTYPSLLVIGCYQ-SLELWNM-SENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 787
            F P Y  L VI   Q  +ELWN+ S  K      H   +  +  S +     +AS D+ 
Sbjct: 854 DFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 912
Query: 788 VKLWK 792
           +++W+
Sbjct: 913 IRVWE 917

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 128/305 (41%), Gaps = 25/305 (8%)
Query: 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 567
           VR  T  V    FS DG+ +A+ G DK   ++  +T +   +++ H   +    FS    
Sbjct: 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 670
Query: 568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDGEIRYW 625
            +AT S DK V++WD+   G  + T+  HS  V    F  NK +  L+ +   D  ++ W
Sbjct: 671 YIATCSADKKVKIWDS-ATGKLVHTYDEHSEQVNCCHF-TNKSNHLLLATGSNDFFLKLW 728
Query: 626 SINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH---- 678
            +N   C     G T  +   RF P      + +A+  + + D  +   R S+       
Sbjct: 729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 788
Query: 679 --------TKPIDSVC-WDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSC 729
                    + I   C W   G+ +   +++ V ++ + +      +H  + + +    C
Sbjct: 789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH--TGHHSTIQYC 846
Query: 730 VFHPTYPSLLVIGCYQ-SLELWNM-SENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 787
            F P Y  L VI   Q  +ELWN+ S  K      H   +  +  S +     +AS D+ 
Sbjct: 847 DFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 905
Query: 788 VKLWK 792
           +++W+
Sbjct: 906 IRVWE 910

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 122/294 (41%), Gaps = 13/294 (4%)
Query: 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 566
           ++R   +K+   H+ +D +LL +   D K ++W + T      +   SS +    ++PS 
Sbjct: 61  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 567 PRLATSSFDKTVRVWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSCDGDGEIR 623
             +A    D    +++      ++R      GH+  +    F    D+ I +  GD    
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCA 178
Query: 624 YWSIN---NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK 680
            W I      +      G    +   P    +++ A +    + D     CR +  GH  
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 681 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV-HELSCNGNKFHSCVFHPTYPSL 738
            I+++C+ P+G   A+ S+D + R++ + +  E     H+    G    S  F  +   L
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLL 296
Query: 739 LVIGCYQSLELWN-MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           L      +  +W+ +  ++   L  H+  ++ L V+ +   VA+ S D F+K+W
Sbjct: 297 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 120/269 (44%), Gaps = 25/269 (9%)
Query: 507 SVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWH-TDTLKS----KTNLEEHSSLITDV 560
           ++RA T  V       D   ++ +   DK  +LW  T   K+    +  L  HS  + DV
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 561 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 620
             S       + S+D  +R+WD    G S R F+GH+  V+S+ F  +   ++ S   D 
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDL-AAGVSTRRFVGHTKDVLSVAFSLDNRQIV-SASRDR 494
Query: 621 EIRYWSINNGSCTRVFKGG-------TAQMRFQPHLGR--YLAAAAENVVSILDAETQAC 671
            I+ W+   G C      G        + +RF P+  +   ++A+ +  V + +      
Sbjct: 495 TIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553
Query: 672 RLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGECVHELSCNGNKFHSCV 730
           R +L GHT  + +V   P G L AS  +D  V +W +   +EG+ ++ L  N +  H+  
Sbjct: 554 RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL---AEGKKLYSLEAN-SVIHALC 609
Query: 731 FHPTYPSLLVIGCYQSLELWNMSENKTMT 759
           F P     L       +++W++ E+K++ 
Sbjct: 610 FSPN-RYWLCAATEHGIKIWDL-ESKSIV 636

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 109/267 (40%), Gaps = 75/267 (28%)
Query: 547 KTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVW----DADNPGYSLRTFMGHSASV 600
           K  +  H+ ++T +  +P  +   + ++S DK++ +W    D    G + R   GHS  V
Sbjct: 375 KGTMRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 601 MSLDFHPNKDDLICSCDG--------DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRY 652
                    +D++ S DG        DGE+R W +  G  TR F                
Sbjct: 434 ---------EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF---------------- 468
Query: 653 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 711
                                   GHTK + SV +      + S S D ++++W     +
Sbjct: 469 -----------------------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN----T 501
Query: 712 EGECVHELSCNGN---KFHSCV-FHPTY--PSLLVIGCYQSLELWNMSENKTM-TLTAHE 764
            GEC + +S  G     + SCV F P    P+++     +++++WN+S  K   TL  H 
Sbjct: 502 LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT 561
Query: 765 GLIAALAVSTETGYVASASHDKFVKLW 791
           G ++ +AVS +    AS   D  V LW
Sbjct: 562 GYVSTVAVSPDGSLCASGGKDGVVLLW 588

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 122/294 (41%), Gaps = 13/294 (4%)
Query: 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 566
           ++R   +K+   H+ +D +LL +   D K ++W + T      +   SS +    ++PS 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 567 PRLATSSFDKTVRVWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSCDGDGEIR 623
             +A    D    +++      ++R      GH+  +    F    D+ I +  GD    
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCA 167
Query: 624 YWSIN---NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK 680
            W I      +      G    +   P    +++ A +    + D     CR +  GH  
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 681 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV-HELSCNGNKFHSCVFHPTYPSL 738
            I+++C+ P+G   A+ S+D + R++ + +  E     H+    G    S  F  +   L
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLL 285
Query: 739 LVIGCYQSLELWN-MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           L      +  +W+ +  ++   L  H+  ++ L V+ +   VA+ S D F+K+W
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 122/294 (41%), Gaps = 13/294 (4%)
Query: 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 566
           ++R   +K+   H+ +D +LL +   D K ++W + T      +   SS +    ++PS 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 567 PRLATSSFDKTVRVWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSCDGDGEIR 623
             +A    D    +++      ++R      GH+  +    F    D+ I +  GD    
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCA 167
Query: 624 YWSIN---NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK 680
            W I      +      G    +   P    +++ A +    + D     CR +  GH  
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 681 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV-HELSCNGNKFHSCVFHPTYPSL 738
            I+++C+ P+G   A+ S+D + R++ + +  E     H+    G    S  F  +   L
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLL 285
Query: 739 LVIGCYQSLELWN-MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           L      +  +W+ +  ++   L  H+  ++ L V+ +   VA+ S D F+K+W
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 123/294 (41%), Gaps = 13/294 (4%)
Query: 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 566
           ++R   +K+   H+ +D +LL +   D K ++W + T      +   SS +    ++PS 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 567 PRLATSSFDKTVRVWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSCDGDGEIR 623
             +A    D    +++      ++R      GH+  +    F    D+ I +  GD    
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCA 167
Query: 624 YWSINNGSCTRV---FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK 680
            W I  G  T       G    +   P    +++ A +    + D     CR +  GH  
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 681 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV-HELSCNGNKFHSCVFHPTYPSL 738
            I+++C+ P+G   A+ S+D + R++ + +  E     H+    G    S  F  +   L
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLL 285
Query: 739 LVIGCYQSLELWN-MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           L      +  +W+ +  ++   L  H+  ++ L V+ +   VA+ S D F+K+W
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 123/294 (41%), Gaps = 13/294 (4%)
Query: 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 566
           ++R   +K+   H+ +D +LL +   D K ++W + T      +   SS +    ++PS 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 567 PRLATSSFDKTVRVWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSCDGDGEIR 623
             +A    D    +++      ++R      GH+  +    F    D+ I +  GD    
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCA 167
Query: 624 YWSINNGSCTRV---FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK 680
            W I  G  T       G    +   P    +++ A +    + D     CR +  GH  
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 681 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV-HELSCNGNKFHSCVFHPTYPSL 738
            I+++C+ P+G   A+ S+D + R++ + +  E     H+    G    S  F  +   L
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLL 285
Query: 739 LVIGCYQSLELWN-MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           L      +  +W+ +  ++   L  H+  ++ L V+ +   VA+ S D F+K+W
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 520 FSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 575
           +S+DG  LAT   DK   +W TD      +  + L+EHS  +  V + PS   LA+SS+D
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 576 KTVRVW-DADNPGYSLRTFMGHSASVMSLDFHPNKDDL-ICSCDGDGEIRYW 625
            TVR+W D D+    +    GH  +V S DF   +    +CS   D  +R W
Sbjct: 175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 16/171 (9%)
Query: 637 KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS-------LQGHTKPIDSVCWDP 689
           K     + ++PH     A + ++ VSI   E  A R         ++GH   +  V W  
Sbjct: 58  KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN 117
Query: 690 SGELLASVSED-SVRVW-TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QS 746
            G  LA+ S D SV +W T  SG E EC+  L  +       ++HP+  +LL    Y  +
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS-EALLASSSYDDT 176
Query: 747 LELWNMSENK---TMTLTAHEGLIAALAVSTETGY--VASASHDKFVKLWK 792
           + +W   ++       L  HEG + +       G   + S S D  V++WK
Sbjct: 177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 99/216 (45%), Gaps = 8/216 (3%)
Query: 488 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK 547
           DA  R  D+  G   K+  S+ A         FS D + LATG H  K  ++  ++ K +
Sbjct: 101 DAHIRLWDLENG---KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE 157
Query: 548 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP 607
            +L+     I  + +SP    LA+ + D  + ++D    G  L T  GH+  + SL F P
Sbjct: 158 YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI-ATGKLLHTLEGHAMPIRSLTFSP 216
Query: 608 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---QMRFQPHLGRYLAAAAENVVSIL 664
           +   L+ + D DG I+ + + + +      G  +    + F P    +++++++  V + 
Sbjct: 217 DSQLLVTASD-DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW 275
Query: 665 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 700
           D  T+ C  +   H   +  V ++ +G  + SV +D
Sbjct: 276 DVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD 311

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/264 (20%), Positives = 105/264 (39%), Gaps = 53/264 (20%)
Query: 535 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 594
           K   W  + L  + +LE H   +  V  S ++P  A+SS D  +R+WD +N G  +++  
Sbjct: 61  KVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN-GKQIKSID 119
Query: 595 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGG-TAQMRFQPHLGR 651
                  +L F P+   L       G++  + + +G        +G     + + P  G+
Sbjct: 120 AGPVDAWTLAFSPDSQYLATGTHV-GKVNIFGVESGKKEYSLDTRGKFILSIAYSPD-GK 177
Query: 652 YLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-------- 702
           YLA+ A + +++I D  T     +L+GH  PI S+ + P  +LL + S+D          
Sbjct: 178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237
Query: 703 -----------------------------------RVWTVGSGSEGECVHELSCNGNKFH 727
                                              +VW VG+ +   CVH    + ++  
Sbjct: 238 ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT---CVHTFFDHQDQVW 294
Query: 728 SCVFHPTYPSLLVIGCYQSLELWN 751
              ++     ++ +G  Q + +++
Sbjct: 295 GVKYNGNGSKIVSVGDDQEIHIYD 318

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 526 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580
           LL +   DK  + W       K      + + HS ++ D   +       ++S+DKT+R+
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-- 638
           WD    G + + F+GH + VMS+D    K  +I S   D  I+ W+I  G C     G  
Sbjct: 92  WDV-ATGETYQRFVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTI-KGQCLATLLGHN 148
Query: 639 -GTAQMRFQPHLG------RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 691
              +Q+R  P+          ++A  + +V   +           GH   I+++   P G
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 692 ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 733
            L+AS  +D  + +W + +    + ++ LS     F S  F P
Sbjct: 209 TLIASAGKDGEIMLWNLAA---KKAMYTLSAQDEVF-SLAFSP 247

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 98/263 (37%), Gaps = 57/263 (21%)
Query: 542 DTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVW----DADNPGYSLRTFMGH 596
           + L  +  LE H+  +T +  S   P L  S S DKT+  W    D    G  +R+F GH
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 597 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 656
           S        H  +D   C+   DG                                L+A+
Sbjct: 65  S--------HIVQD---CTLTADG-----------------------------AYALSAS 84
Query: 657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 715
            +  + + D  T        GH   + SV  D    ++ S S D +++VWT+    +G+C
Sbjct: 85  WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI----KGQC 140
Query: 716 VHELSCNGNKFHSCVFHPTYP------SLLVIGCYQSLELWNMSENKTMT-LTAHEGLIA 768
           +  L  + +        P         +++  G  + ++ WN+++ +       H   I 
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 769 ALAVSTETGYVASASHDKFVKLW 791
            L  S +   +ASA  D  + LW
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLW 223

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 503 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDV 560
           K ++SV A T++V C  F+   + +LATG  DK   LW    LK K +  E H   I  V
Sbjct: 264 KPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 323
Query: 561 RFSP-SMPRLATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSASVMSLDFH 606
           ++SP +   LA+S  D+ + VWD              D P   L    GH+A +    ++
Sbjct: 324 QWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWN 383
Query: 607 PNKDDLICSCDGDGEIRYWSI 627
           PN+  +ICS   D  ++ W +
Sbjct: 384 PNEPWVICSVSEDNIMQVWQM 404

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 35/191 (18%)
Query: 526 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 581
           L  +   D+K ++W T   +T K   +++ H++ +  + F+P S   LAT S DKTV +W
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 641
           D  N    L +F  H   +  + + P+ + ++ S   D  +  W ++        K G  
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS--------KIGEE 353
Query: 642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGE-LLASVS 698
           Q                   S  DAE     L     GHT  I    W+P+   ++ SVS
Sbjct: 354 Q-------------------SPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 394
Query: 699 EDSV-RVWTVG 708
           ED++ +VW + 
Sbjct: 395 EDNIMQVWQMA 405

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 526 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580
           LL +   DK  + W       K      + + HS ++ D   +       ++S+DKT+R+
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-- 638
           WD    G + + F+GH + VMS+D    K  +I S   D  I+ W+I  G C     G  
Sbjct: 92  WDV-ATGETYQRFVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTI-KGQCLATLLGHN 148
Query: 639 -GTAQMRFQPHLG------RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 691
              +Q+R  P+          ++A  + +V   +           GH   I+++   P G
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 692 ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 733
            L+AS  +D  + +W + +    + ++ LS     F S  F P
Sbjct: 209 TLIASAGKDGEIMLWNLAA---KKAMYTLSAQDEVF-SLAFSP 247

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 526 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580
           LL +   DK  + W       K      + + HS ++ D   +       ++S+DKT+R+
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-- 638
           WD    G + + F+GH + VMS+D    K  +I S   D  I+ W+I  G C     G  
Sbjct: 92  WDV-ATGETYQRFVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTI-KGQCLATLLGHN 148
Query: 639 -GTAQMRFQPHLG------RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 691
              +Q+R  P+          ++A  + +V   +           GH   I+++   P G
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 692 ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 733
            L+AS  +D  + +W + +    + ++ LS     F S  F P
Sbjct: 209 TLIASAGKDGEIMLWNLAA---KKAMYTLSAQDEVF-SLAFSP 247

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 32/228 (14%)
Query: 526 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580
           LL +   DK  + W       K      + + HS ++ D   +       ++S+DKT+R+
Sbjct: 26  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 85
Query: 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-- 638
           WD    G + + F+GH + VMS+D    K  +I S   D  I+ W+I  G C     G  
Sbjct: 86  WDV-ATGETYQRFVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTI-KGQCLATLLGHN 142
Query: 639 -GTAQMRFQPHLGRYLAAAAENVVSIL----DAETQACRLS-------LQGHTKPIDSVC 686
              +Q+R  P+       A ++ V+I+    D   +A  L+         GH   I+++ 
Sbjct: 143 DWVSQVRVVPN-----EKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 197
Query: 687 WDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 733
             P G L+AS  +D  + +W + +    + ++ LS     F S  F P
Sbjct: 198 ASPDGTLIASAGKDGEIMLWNLAA---KKAMYTLSAQDEVF-SLAFSP 241

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 526 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580
           LL +   DK  + W       K      + + HS ++ D   +       ++S+DKT+R+
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-- 638
           WD    G + + F+GH + VMS+D    K  +I S   D  I+ W+I  G C     G  
Sbjct: 92  WDV-ATGETYQRFVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTI-KGQCLATLLGHN 148
Query: 639 -GTAQMRFQPHLG------RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 691
              +Q+R  P+          ++A  + +V   +           GH   I+++   P G
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 692 ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 733
            L+AS  +D  + +W + +    + ++ LS     F S  F P
Sbjct: 209 TLIASAGKDGEIMLWNLAA---KKAMYTLSAQDEVF-SLAFSP 247

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 14/229 (6%)
Query: 496 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLW------HTDTLKSKTN 549
           V   F+  + ++V    + V+ C ++  G  +A GG D K  ++      + +    K +
Sbjct: 90  VWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKS 149
Query: 550 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 609
           +  H++ ++   F+ S  ++ T+S D T  +WD ++ G  L++F GH A V+ LD  P++
Sbjct: 150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES-GQLLQSFHGHGADVLCLDLAPSE 208
Query: 610 D-DLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILD 665
             +   S   D +   W + +G C + F   +     +R+ P    + + + +    + D
Sbjct: 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268
Query: 666 --AETQACRLSLQGHTKPIDSVCWDPSGELL-ASVSEDSVRVWTVGSGS 711
             A+ +    S +       SV +  SG LL A  ++ ++ VW V  GS
Sbjct: 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 126/306 (41%), Gaps = 18/306 (5%)
Query: 500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 559
           F  K   +++   +KV+C  +  D + + +   D K ++W + T   +  +    + +  
Sbjct: 52  FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMA 111
Query: 560 VRFSPSMPRLATSSFDKTVRVW-----DADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 614
             ++PS   +A    D    V+       +N     ++   H+  + +  F  N D  I 
Sbjct: 112 CAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF-TNSDMQIL 170
Query: 615 SCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHL--GRYLAAAAENVVSILDAETQ 669
           +  GDG    W + +G   + F G  A    +   P      +++   +    + D  + 
Sbjct: 171 TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230
Query: 670 ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 728
            C  + + H   ++SV + PSG+  AS S+D + R++ + +  E   V   S     F +
Sbjct: 231 QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE---VAIYSKESIIFGA 287
Query: 729 CVFHPTYPSLLVIGCYQ--SLELWNMSE-NKTMTLTAHEGLIAALAVSTETGYVASASHD 785
                +    L+   Y   ++ +W++ + ++   L  HE  ++ L VS +     S S D
Sbjct: 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD 347
Query: 786 KFVKLW 791
             +++W
Sbjct: 348 HTLRVW 353

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 503 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDV 560
           K +++V A T++V C  F+   + +LATG  DK   LW    LK K +  E H   I  V
Sbjct: 270 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 329
Query: 561 RFSP-SMPRLATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSASVMSLDFH 606
           ++SP +   LA+S  D+ + VWD              D P   L    GH+A +    ++
Sbjct: 330 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 389
Query: 607 PNKDDLICSCDGDGEIRYWSI 627
           PN+  +ICS   D  ++ W +
Sbjct: 390 PNEPWIICSVSEDNIMQVWQM 410

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 35/191 (18%)
Query: 526 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 581
           L  +   D+K ++W T   +T K    ++ H++ +  + F+P S   LAT S DKTV +W
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 641
           D  N    L +F  H   +  + + P+ + ++ S   D  +  W ++        K G  
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS--------KIGEE 359
Query: 642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGE-LLASVS 698
           Q                   S  DAE     L     GHT  I    W+P+   ++ SVS
Sbjct: 360 Q-------------------STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 400
Query: 699 EDSV-RVWTVG 708
           ED++ +VW + 
Sbjct: 401 EDNIMQVWQMA 411

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 503 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDV 560
           K +++V A T++V C  F+   + +LATG  DK   LW    LK K +  E H   I  V
Sbjct: 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 327
Query: 561 RFSP-SMPRLATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSASVMSLDFH 606
           ++SP +   LA+S  D+ + VWD              D P   L    GH+A +    ++
Sbjct: 328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 387
Query: 607 PNKDDLICSCDGDGEIRYWSI 627
           PN+  +ICS   D  ++ W +
Sbjct: 388 PNEPWIICSVSEDNIMQVWQM 408

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 35/193 (18%)
Query: 526 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 581
           L  +   D+K ++W T   +T K    ++ H++ +  + F+P S   LAT S DKTV +W
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 641
           D  N    L +F  H   +  + + P+ + ++ S   D  +  W ++        K G  
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS--------KIGEE 357
Query: 642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGE-LLASVS 698
           Q                   S  DAE     L     GHT  I    W+P+   ++ SVS
Sbjct: 358 Q-------------------STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 398
Query: 699 EDSV-RVWTVGSG 710
           ED++ +VW +   
Sbjct: 399 EDNIMQVWQMAEN 411

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 503 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDV 560
           K +++V A T++V C  F+   + +LATG  DK   LW    LK K +  E H   I  V
Sbjct: 272 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 331
Query: 561 RFSP-SMPRLATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSASVMSLDFH 606
           ++SP +   LA+S  D+ + VWD              D P   L    GH+A +    ++
Sbjct: 332 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 391
Query: 607 PNKDDLICSCDGDGEIRYWSI 627
           PN+  +ICS   D  ++ W +
Sbjct: 392 PNEPWIICSVSEDNIMQVWQM 412

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 35/191 (18%)
Query: 526 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 581
           L  +   D+K ++W T   +T K    ++ H++ +  + F+P S   LAT S DKTV +W
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 641
           D  N    L +F  H   +  + + P+ + ++ S   D  +  W ++        K G  
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS--------KIGEE 361
Query: 642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGE-LLASVS 698
           Q                   S  DAE     L     GHT  I    W+P+   ++ SVS
Sbjct: 362 Q-------------------STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 402
Query: 699 EDSV-RVWTVG 708
           ED++ +VW + 
Sbjct: 403 EDNIMQVWQMA 413

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 503 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDV 560
           K ++ V A T++V C  F+   + +LATG  DK   LW    LK K +  E H   I  V
Sbjct: 266 KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
Query: 561 RFSP-SMPRLATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSASVMSLDFH 606
            +SP +   LA+S  D+ + VWD              D P   L    GH+A +    ++
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWN 385
Query: 607 PNKDDLICSCDGDGEIRYWSI 627
           PN+  +ICS   D  ++ W +
Sbjct: 386 PNEPWVICSVSEDNIMQIWQM 406

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 35/191 (18%)
Query: 526 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 581
           L  +   D+K ++W T    T K    ++ H++ +  + F+P S   LAT S DKTV +W
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 641
           D  N    L TF  H   +  + + P+ + ++ S   D  +  W ++        K G  
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS--------KIGEE 355
Query: 642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGE-LLASVS 698
           Q                   S  DAE     L     GHT  I    W+P+   ++ SVS
Sbjct: 356 Q-------------------SAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 396
Query: 699 EDSV-RVWTVG 708
           ED++ ++W + 
Sbjct: 397 EDNIMQIWQMA 407

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 32/215 (14%)
Query: 524 GKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFS-PSM-PRLATSSFDKTVR 579
           GK LAT   DK   ++  +  T K    L  H   +  V ++ P     LA+ S+D  V 
Sbjct: 21  GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 580 VWDADNPGYS-LRTFMGHSASVMSLDFHPNKDD---LICSCDGDGEIRYWSINNGSCTRV 635
           +W  +N  +S +     HSASV S+ + P++     L+ S DG   +  +  N  +   +
Sbjct: 81  IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
Query: 636 FKG---GTAQMRFQP--------HLG-----RYLAAAAENVVSIL----DAETQACRLSL 675
                 G     + P        H G     +++   A+N+V I     DA+T     +L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 676 QGHTKPIDSVCWDPSGEL---LASVSED-SVRVWT 706
           +GH+  +  V W P+  L   LASVS+D +  +WT
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 92/210 (43%), Gaps = 30/210 (14%)
Query: 523 DGKLLATGGHDKKAVLWHTDTLKSKTN---------LEEHSSLITDVRFSPSMPRLATSS 573
           D  +L +G  DK  ++W     + + N         L  H+  ++D+  S       +SS
Sbjct: 38  DSPVLISGSRDKTVMIW--KLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 574 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI------ 627
           +DKT+R+WD    G + + F+GH + V S+ F P+   ++ S   + EI+ W+I      
Sbjct: 96  WDKTLRLWDL-RTGTTYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNILGECKF 153
Query: 628 ---------NNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH 678
                    +  SC R      +  + QP    + +   +  + + +   Q  R + + H
Sbjct: 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ-IRYTFKAH 212
Query: 679 TKPIDSVCWDPSGELLASVSED-SVRVWTV 707
              ++ +   P+G+ +A+  +D  + +W +
Sbjct: 213 ESNVNHLSISPNGKYIATGGKDKKLLIWDI 242

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 97/268 (36%), Gaps = 70/268 (26%)
Query: 550 LEEHSSLITDV------RFSPSMPRLATSSFDKTVRVW---DADNPGYS---LRTFMGHS 597
           LE HS  +T +      + +   P L + S DKTV +W   + +  GY     +   GH+
Sbjct: 17  LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 598 ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA 657
             V  L     ++    S   D  +R W +  G+  + F                     
Sbjct: 77  HFVSDLAL-SQENCFAISSSWDKTLRLWDLRTGTTYKRF--------------------- 114
Query: 658 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSEDSVRVWTVGSGSEGECV 716
                              GH   + SV + P   ++L++ +E  +++W +     GEC 
Sbjct: 115 ------------------VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI----LGECK 152
Query: 717 HELSCNGNK--FHSCV-----------FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH 763
              +   N   + SCV             P  P    +G    L++WN +     T  AH
Sbjct: 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAH 212
Query: 764 EGLIAALAVSTETGYVASASHDKFVKLW 791
           E  +  L++S    Y+A+   DK + +W
Sbjct: 213 ESNVNHLSISPNGKYIATGGKDKKLLIW 240

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 32/215 (14%)
Query: 524 GKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFS-PSM-PRLATSSFDKTVR 579
           GK LAT   DK   ++  +  T K    L  H   +  V ++ P     LA+ S+D  V 
Sbjct: 23  GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 580 VWDADNPGYS-LRTFMGHSASVMSLDFHPNKDD---LICSCDGDGEIRYWSINNGSCTRV 635
           +W  +N  +S +     HSASV S+ + P++     L+ S DG   +  +  N  +   +
Sbjct: 83  IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142
Query: 636 FKG---GTAQMRFQP--------HLG-----RYLAAAAENVVSIL----DAETQACRLSL 675
                 G     + P        H G     +++   A+N+V I     DA+T     +L
Sbjct: 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 202
Query: 676 QGHTKPIDSVCWDPSGEL---LASVSED-SVRVWT 706
           +GH+  +  V W P+  L   LASVS+D +  +WT
Sbjct: 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 32/228 (14%)
Query: 526 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580
           LL +   DK  + W       K      + + HS ++ D   +       ++S+DKT+R+
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-- 638
           WD    G + + F+GH + V S+D    K   I S   D  I+ W+I  G C     G  
Sbjct: 92  WDV-ATGETYQRFVGHKSDVXSVDI-DKKASXIISGSRDKTIKVWTI-KGQCLATLLGHN 148
Query: 639 -GTAQMRFQPHLGRYLAAAAENVVSIL----DAETQACRLS-------LQGHTKPIDSVC 686
              +Q+R  P+       A ++ V+I+    D   +A  L+         GH   I+++ 
Sbjct: 149 DWVSQVRVVPN-----EKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 687 WDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 733
             P G L+AS  +D  + +W + +    +  + LS     F S  F P
Sbjct: 204 ASPDGTLIASAGKDGEIXLWNLAA---KKAXYTLSAQDEVF-SLAFSP 247

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 16/139 (11%)
Query: 503 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDV 560
           K ++ V A T++V C  F+   + +LATG  DK   LW    LK K +  E H   I  V
Sbjct: 266 KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
Query: 561 RFSP-SMPRLATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSASVMSLDFH 606
            +SP +   LA+S  D+ + VWD              D P   L    GH+A +    ++
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWN 385
Query: 607 PNKDDLICSCDGDGEIRYW 625
           PN+  +ICS   D   + W
Sbjct: 386 PNEPWVICSVSEDNIXQIW 404

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 35/188 (18%)
Query: 526 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 581
           L  +   D+K  +W T    T K    ++ H++ +  + F+P S   LAT S DKTV +W
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 641
           D  N    L TF  H   +  + + P+ + ++ S   D  +  W ++        K G  
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS--------KIGEE 355
Query: 642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGE-LLASVS 698
           Q                   S  DAE     L     GHT  I    W+P+   ++ SVS
Sbjct: 356 Q-------------------SAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 396
Query: 699 EDSV-RVW 705
           ED++ ++W
Sbjct: 397 EDNIXQIW 404

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 32/215 (14%)
Query: 524 GKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFS-PSM-PRLATSSFDKTVR 579
           GK LAT   DK   ++  +  T K    L  H   +  V ++ P     LA+ S+D  V 
Sbjct: 21  GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 580 VWDADNPGYS-LRTFMGHSASVMSLDFHPNKDD---LICSCDGDGEIRYWSINNGSCTRV 635
           +W  +N  +S +     HSASV S+ + P++     L+ S DG   +  +  N  +   +
Sbjct: 81  IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
Query: 636 FKG---GTAQMRFQP--------HLG-----RYLAAAAENVVSIL----DAETQACRLSL 675
                 G     + P        H G     +++   A+N+V I     DA+T     +L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 676 QGHTKPIDSVCWDPSGEL---LASVSED-SVRVWT 706
           +GH+  +  V W P+  L   LASVS+D +  +WT
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 521 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580
           S  G ++ +G +D   ++W    +K    L  H+  I    +     R  ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 631
           WD +N G  + T  GH+A V  L      D  + S   DG IR W  N+ S
Sbjct: 337 WDLEN-GELMYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYS 383

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 121/276 (43%), Gaps = 43/276 (15%)
Query: 547 KTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 605
           +T L  H +S+IT ++F  +   + T + DK +RV+D+ N  + L+   GH   V +L +
Sbjct: 114 RTTLRGHMTSVITCLQFEDNY--VITGADDKMIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 606 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF-----QPHLGRYLAAAAENV 660
                 ++ S   D  +R W I  G CT VF+G  + +R        ++   +  + +N 
Sbjct: 171 AHG--GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228
Query: 661 VSILD-----------------------AETQACRLSLQGHTKPIDSVCWDPSGELLASV 697
           + +                          E       L+GH   + +V     G ++ S 
Sbjct: 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSG 286
Query: 698 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 756
           S D ++ VW V   ++ +C++ LS + ++ +S ++       +      ++ +W++   +
Sbjct: 287 SYDNTLIVWDV---AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343
Query: 757 TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
            M TL  H  L+  L +S +  ++ SA+ D  ++ W
Sbjct: 344 LMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGW 377

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 20/161 (12%)
Query: 553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDF-HPNKD 610
           H+ +I D        R+AT S DKT+++++ +   + L  T  GH   V  +D+ HP   
Sbjct: 8   HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 611 DLICSCDGDGEIRYWSINNGSCTR-----VFKGGTAQMRFQPHLGRY----LAAAAENVV 661
            ++ SC  DG++  W   NG  ++     V       +++ PH   Y    L A+++  V
Sbjct: 68  TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPH--EYGPMLLVASSDGKV 125
Query: 662 SILDAETQACR--LSLQGHTKPIDSVCWDPSGELLASVSED 700
           S+++ +       + +  H   ++S  W P     A++ ED
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAP-----ATIEED 161

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 28/195 (14%)
Query: 524 GKLLATGGHDKKAV-LWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 578
           G L+A+   D  AV LW  D     + SK    EH  +++ V    S  +  + S D  +
Sbjct: 95  GILVAS---DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICI 151
Query: 579 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 638
           +VWD       L ++  H+A V  +   P+KD +  SC  D  I  W       TR  K 
Sbjct: 152 KVWDLAQ-QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD------TRCPKP 204
Query: 639 GT-----------AQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVC 686
            +             + + P          EN  VS++D ++ +C LS   H++ +  + 
Sbjct: 205 ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLV 264
Query: 687 WDP-SGELLASVSED 700
           + P S   LAS+SED
Sbjct: 265 FSPHSVPFLASLSED 279

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 120/276 (43%), Gaps = 43/276 (15%)
Query: 547 KTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 605
           +T L  H +S+IT ++F  +   + T + DK +RV+D+ N  + L+   GH   V +L +
Sbjct: 114 RTTLRGHXTSVITCLQFEDNY--VITGADDKXIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 606 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF-----QPHLGRYLAAAAENV 660
                 ++ S   D  +R W I  G CT VF+G  + +R        ++   +  + +N 
Sbjct: 171 AHG--GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228
Query: 661 VSILD-----------------------AETQACRLSLQGHTKPIDSVCWDPSGELLASV 697
           + +                          E       L+GH   + +V     G ++ S 
Sbjct: 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV--SGHGNIVVSG 286
Query: 698 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 756
           S D ++ VW V   ++ +C++ LS + ++ +S ++       +      ++ +W++   +
Sbjct: 287 SYDNTLIVWDV---AQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGE 343
Query: 757 -TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
              TL  H  L+  L +S +  ++ SA+ D  ++ W
Sbjct: 344 LXYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGW 377

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 126/289 (43%), Gaps = 28/289 (9%)
Query: 522 SDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579
           S G +LA    D    LW   +  +     +E+    I+ V +      LA  +    V+
Sbjct: 125 SSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 183
Query: 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 639
           +WD       LR    HSA V SL ++     ++ S    G I +  +           G
Sbjct: 184 LWDVQQQK-RLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSG 239
Query: 640 TAQ----MRFQPHLGRYLAAAA-ENVVSIL-DAETQACRLSLQGHTK---PIDSVCWDP- 689
            +Q    +R+ P  GR+LA+   +N+V++   A  +   + LQ  T+    + +V W P 
Sbjct: 240 HSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 298
Query: 690 SGELLAS---VSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-- 744
              +LA+    S+  +R+W V SG+   C+  +  + ++  S ++ P Y  L+    +  
Sbjct: 299 QSNVLATGGGTSDRHIRIWNVCSGA---CLSAVDAH-SQVCSILWSPHYKELISGHGFAQ 354
Query: 745 QSLELWNM-SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792
             L +W   +  K   L  H   + +L +S +   VASA+ D+ ++LW+
Sbjct: 355 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 20/161 (12%)
Query: 553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDF-HPNKD 610
           H+  I D        R AT S DKT+++++ +   + L  T  GH   V  +D+ HP   
Sbjct: 8   HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 611 DLICSCDGDGEIRYWSINNGSCTR-----VFKGGTAQMRFQPHLGRY----LAAAAENVV 661
            ++ SC  DG++  W   NG  ++     V       +++ PH   Y    L A+++  V
Sbjct: 68  TILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPH--EYGPXLLVASSDGKV 125
Query: 662 SILDAETQACR--LSLQGHTKPIDSVCWDPSGELLASVSED 700
           S+++ +       + +  H   ++S  W P     A++ ED
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAP-----ATIEED 161

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 126/289 (43%), Gaps = 28/289 (9%)
Query: 522 SDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579
           S G +LA    D    LW   +  +     +E+    I+ V +      LA  +    V+
Sbjct: 114 SSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 172
Query: 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 639
           +WD       LR    HSA V SL ++     ++ S    G I +  +           G
Sbjct: 173 LWDVQQQK-RLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSG 228
Query: 640 TAQ----MRFQPHLGRYLAAAA-ENVVSIL-DAETQACRLSLQGHTK---PIDSVCWDP- 689
            +Q    +R+ P  GR+LA+   +N+V++   A  +   + LQ  T+    + +V W P 
Sbjct: 229 HSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287
Query: 690 SGELLAS---VSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-- 744
              +LA+    S+  +R+W V SG+   C+  +  + ++  S ++ P Y  L+    +  
Sbjct: 288 QSNVLATGGGTSDRHIRIWNVCSGA---CLSAVDAH-SQVCSILWSPHYKELISGHGFAQ 343
Query: 745 QSLELWNM-SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792
             L +W   +  K   L  H   + +L +S +   VASA+ D+ ++LW+
Sbjct: 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/316 (20%), Positives = 133/316 (42%), Gaps = 36/316 (11%)
Query: 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 566
           +++  + KV    ++ +   + +   D + ++W+  T +    ++ H   + +  F+P+ 
Sbjct: 61  TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 567 PRLATSSFDKTVRVWD----ADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 620
             +A    D    +++    AD  G     R   GH     S  + P+++  + +  GD 
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 621 EIRYWSINNGSCTRVF-----KGGTAQMRFQP----HLGRYLAAAAENVVSILDAE--TQ 669
               W +  G    +F      G TA +        +   +++ + +  V + D    ++
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 670 ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH-ELSCNGNKF- 726
           A R +  GH   I+SV + P G+   + S+D + R++ + +G + +  + E   N N+  
Sbjct: 241 AVR-TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELP 299
Query: 727 -HSCVFHPTYPSLLVIG-----CYQSLELWN-----MSENKTMTLTAHEGLIAALAVSTE 775
             + V       LL  G     CY    +W+     M  N      +HEG I+ L +S++
Sbjct: 300 IVTSVAFSISGRLLFAGYSNGDCY----VWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD 355
Query: 776 TGYVASASHDKFVKLW 791
              + + S DK +K+W
Sbjct: 356 GSALCTGSWDKNLKIW 371

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 63/159 (39%), Gaps = 44/159 (27%)
Query: 518 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-SPSMPRLATSSFDK 576
           C  S    ++ +G  DK A +W   +L    NL+ H++ + D +  S S  +  T+S DK
Sbjct: 108 CSLSFQDGVVISGSWDKTAKVWKEGSLV--YNLQAHNASVWDAKVVSFSENKFLTASADK 165
Query: 577 TVRVWDAD---------------------------------------NPGYSLRTFMGHS 597
           T+++W  D                                       + G  LRT+ GH 
Sbjct: 166 TIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHE 225
Query: 598 ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 636
           + V  +   PN D  I SC  D  +R WS  NGS  +V 
Sbjct: 226 SFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGSLKQVI 262

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 68/148 (45%), Gaps = 12/148 (8%)
Query: 569 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 628
           + + S+DKT +VW   +  Y+L+    H+ASV         ++   +   D  I+ W   
Sbjct: 117 VISGSWDKTAKVWKEGSLVYNLQ---AHNASVWDAKVVSFSENKFLTASADKTIKLW--Q 171
Query: 629 NGSCTRVFKGGTAQMRFQPHL-----GRYLAAAAENVVSILDAETQACRLSLQGHTKPID 683
           N    + F G         HL     G +++ + + ++ ++D  T     + +GH   + 
Sbjct: 172 NDKVIKTFSG--IHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVY 229
Query: 684 SVCWDPSGELLASVSEDSVRVWTVGSGS 711
            +   P+G++++   + +VR+W+  +GS
Sbjct: 230 CIKLLPNGDIVSCGEDRTVRIWSKENGS 257

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 28/289 (9%)
Query: 522 SDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579
           S G +LA    D    LW   +  +     +E+    I+ V +      LA  +    V+
Sbjct: 34  SSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 92
Query: 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 639
           +WD       LR    HSA V SL +      ++ S    G I +  +           G
Sbjct: 93  LWDVQQQK-RLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSG 148
Query: 640 TAQ----MRFQPHLGRYLAAAA-ENVVSIL-DAETQACRLSLQGHTK---PIDSVCWDP- 689
            +Q    +R+ P  GR+LA+   +N+V++   A  +   + LQ  T+    + +V W P 
Sbjct: 149 HSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207
Query: 690 SGELLAS---VSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-- 744
              +LA+    S+  +R+W V SG+   C+  +  + ++  S ++ P Y  L+    +  
Sbjct: 208 QSNVLATGGGTSDRHIRIWNVCSGA---CLSAVDAH-SQVCSILWSPHYKELISGHGFAQ 263
Query: 745 QSLELWNM-SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792
             L +W   +  K   L  H   + +L +S +   VASA+ D+ ++LW+
Sbjct: 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 13/140 (9%)
Query: 496 VSQGFSFKE--ANSVRAST-----SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT 548
           V Q F  KE   +S+ A       S  +   +  D K +  G   K A+  +  T K+ T
Sbjct: 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG--PKGAIFVYQITEKTPT 240
Query: 549 -NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP 607
             L  H   I+ + F+ +   L ++S D T+R+W   N G S   F GHS S++S  +  
Sbjct: 241 GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSIVSASWVG 299
Query: 608 NKDDLICSCDGDGEIRYWSI 627
             DD + SC  DG +R WS+
Sbjct: 300 --DDKVISCSMDGSVRLWSL 317

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 98/248 (39%), Gaps = 46/248 (18%)
Query: 552 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKD 610
           EHS   T  + SPS    A+      VR+WD     + L+T +   S  V  + +     
Sbjct: 57  EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK 116
Query: 611 DLICSCDGDGEIRY---WSINNGSCTRVFKGGTAQMR---FQPHL-GRYLAAAAENVVSI 663
            +  +  G+G  R+   +  + G+      G    M    F+P    R ++ + +N V+I
Sbjct: 117 RI--AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 174
Query: 664 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG 723
            +      + +   HTK + SV ++P G L AS            +G +G  V     +G
Sbjct: 175 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS------------TGGDGTIVLYNGVDG 222
Query: 724 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 783
            K  + VF                      E+ ++   AH G +  L  S +   +ASAS
Sbjct: 223 TK--TGVF----------------------EDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258
Query: 784 HDKFVKLW 791
            DK +K+W
Sbjct: 259 ADKTIKIW 266

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 99/269 (36%), Gaps = 67/269 (24%)
Query: 553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDF-HPNKD 610
           H  +I D +      RLAT S D++V+++D  N G  L     GH   V  + + HP   
Sbjct: 12  HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 611 DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 670
           +++ SC  D ++  W   NG+  +  +                                 
Sbjct: 72  NILASCSYDRKVIIWREENGTWEKSHEHA------------------------------- 100
Query: 671 CRLSLQGHTKPIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGEC-----VHELSCN 722
                 GH   ++SVCW P   G +LA  S D ++ + T     + E       H + CN
Sbjct: 101 ------GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCN 154
Query: 723 GNKFH------SCVFHPTYPSLLVI------GCYQSLELWNMSEN----KTMTLTAHEGL 766
              +       S + HP+      I      GC   ++LW   E+    +   L AH   
Sbjct: 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW 214
Query: 767 IAALA----VSTETGYVASASHDKFVKLW 791
           +  +A    +   T  +AS S D  V +W
Sbjct: 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIW 243

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 543 TLKSKTNLEE-----HSSLITDVRFSPSMPRLATSSFDKTVRVW---DADNPGYSLRTFM 594
            L S  NL+      H S IT ++F PS   L +SS D  +++W   D  NP    RT +
Sbjct: 123 VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP----RTLI 178
Query: 595 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 636
           GH A+V  +    ++   + S   DG IR W    G+    F
Sbjct: 179 GHRATVTDIAI-IDRGRNVLSASLDGTIRLWECGTGTTIHTF 219

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 543 TLKSKTNLEE-----HSSLITDVRFSPSMPRLATSSFDKTVRVW---DADNPGYSLRTFM 594
            L S  NL+      H S IT ++F PS   L +SS D  +++W   D  NP    RT +
Sbjct: 120 VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP----RTLI 175
Query: 595 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 636
           GH A+V  +    ++   + S   DG IR W    G+    F
Sbjct: 176 GHRATVTDIAI-IDRGRNVLSASLDGTIRLWECGTGTTIHTF 216

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 34/119 (28%)
Query: 595 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLA 654
           GH+A V+ + + P+ D++I S   D  +  W I +G       G    +R          
Sbjct: 79  GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDG-------GLVLPLR---------- 121
Query: 655 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE--LLASVSEDSVRVWTVGSGS 711
              E V+            +L+GHTK +  V W P+ +  LL++  ++ + VW VG+G+
Sbjct: 122 ---EPVI------------TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGA 165

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 550 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 609
           L  H   +T V+++     L + S D +  VW + N G  L T  GH+ ++ S+D     
Sbjct: 28  LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN-GERLGTLDGHTGTIWSIDV---- 82
Query: 610 DDLICSC---DGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVV 661
           D     C     D  I+ W ++NG C   +K      ++ F P  G Y  A  +NV+
Sbjct: 83  DCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILDNVM 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	792
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.98
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.98
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.82
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.81
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.79
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.74
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.7
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.7
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.68
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.67
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.66
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.65
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.65
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.65
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.65
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.63
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.62
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.62
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.59
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.59
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.59
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.57
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.56
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.56
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.55
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.54
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.53
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.5
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.49
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.49
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.48
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.48
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.46
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.46
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.44
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.44
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.43
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.42
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.41
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.41
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.37
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.35
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.34
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.33
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.32
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.31
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.29
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.26
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.25
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.24
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.24
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.21
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.2
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.19
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.18
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.18
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.15
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.15
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.11
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.11
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.05
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.04
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.04
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.01
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.01
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.97
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.97
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.96
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.95
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.91
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.91
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.9
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.88
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.87
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.87
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.85
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.84
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.84
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.82
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.81
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.78
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.78
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.77
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.77
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.74
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.73
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.72
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.67
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.66
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.64
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.64
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.62
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.62
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.57
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.56
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.52
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.51
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.51
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.51
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.51
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.51
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.51
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.47
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.45
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.4
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.39
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.38
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.37
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.35
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.31
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.25
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.22
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.21
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.15
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.12
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.09
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.09
3ott_A	758	Two-component system sensor histidine kinase; beta	98.08
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.08
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.02
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.02
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.01
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.0
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.99
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.95
3ott_A	758	Two-component system sensor histidine kinase; beta	97.95
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.94
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.94
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.93
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.91
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.9
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.85
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.82
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.8
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.78
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.77
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.77
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.75
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.74
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.69
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.69
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.69
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.64
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.56
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.56
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.49
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.4
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.4
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.36
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.35
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.34
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.27
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.27
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.25
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.17
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.12
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.1
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.06
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.06
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.01
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.9
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.81
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	96.76
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.69
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.68
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.62
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.58
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	96.55
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.51
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.35
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.25
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	96.25
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.98
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.46
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.44
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.05
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.86
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.33
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	94.25
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	93.98
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	93.97
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	93.42
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.39
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.03
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	92.84
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	92.71
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	91.46
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	91.32
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	89.77
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	87.47
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	86.72
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	86.13
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	84.9
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	84.78
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	84.39
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	82.66
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	82.19
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	81.69

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-42  Score=389.72  Aligned_cols=283  Identities=26%  Similarity=0.492  Sum_probs=266.0

Q ss_pred             eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      ...+.+|.+.|+|++|+|++.+||+|+.||+|+|||+.+++.+..+.+|...|++++|+|++++|++|+.|++|+|||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeE
Q 003842          585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVV  661 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I  661 (792)
                      + ...+..+.+|...|.+++|+|++. +|++|+.|++|++||++++.++..+.+   .+..+.+++++..+++++.|+.|
T Consensus       181 ~-~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v  258 (410)
T 1vyh_C          181 G-FECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  258 (410)
T ss_dssp             S-SCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             C-CceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence            7 678888999999999999999976 566999999999999999999888765   46778999999999999999999


Q ss_pred             EEEECCCCeEEEEecCCCCCeEEEEEcCC--------------------CCEEEEEeCC-eEEEEECCCCCCcceEEEee
Q 003842          662 SILDAETQACRLSLQGHTKPIDSVCWDPS--------------------GELLASVSED-SVRVWTVGSGSEGECVHELS  720 (792)
Q Consensus       662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spd--------------------g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~  720 (792)
                      ++||++++++...+.+|...|.+++|+|+                    +.+|++++.| .|++||++++   .++..+.
T Consensus       259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~  335 (410)
T 1vyh_C          259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLV  335 (410)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEE
T ss_pred             EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEE
Confidence            99999999999999999999999999996                    6789999999 9999999876   7888899


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          721 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       721 ~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +|...|.+++|+|++++|++++.|+.|+|||+.+++++ .+.+|...|++++|+|++.+|++|+.||.|+||+
T Consensus       336 ~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            99999999999999999999999999999999988766 7789999999999999999999999999999997

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=8.2e-42  Score=372.77  Aligned_cols=289  Identities=21%  Similarity=0.422  Sum_probs=263.2

Q ss_pred             CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcE
Q 003842          499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV  578 (792)
Q Consensus       499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V  578 (792)
                      ...++....+++|.+.|++++|++|+++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|
T Consensus        42 ~~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v  121 (340)
T 1got_B           42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC  121 (340)
T ss_dssp             CCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             cccchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeE
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCC---ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEE
Q 003842          579 RVWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRY  652 (792)
Q Consensus       579 ~IWdl~s~~---~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~l  652 (792)
                      +|||+.+..   .....+.+|...|.++.|++++.  +++++.|+.|++||+++++++..+.+   .+.+++|+|++..+
T Consensus       122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  199 (340)
T 1got_B          122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             EEEECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEE
Confidence            999998643   34567789999999999998753  66899999999999999998888754   57889999999999


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec--CCCceEEE
Q 003842          653 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC--NGNKFHSC  729 (792)
Q Consensus       653 la~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~--~~~~i~si  729 (792)
                      ++++.|+.|++||++++.++..+.+|...|++++|+|++++|++++.| .|++||++++   ..+..+..  +...|.++
T Consensus       200 ~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~  276 (340)
T 1got_B          200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSV  276 (340)
T ss_dssp             EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEE
T ss_pred             EEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEE
Confidence            999999999999999999999999999999999999999999999999 9999999875   44444432  23479999


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          730 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +|+|++++|++++.|+.|++||+.+++.+ .+.+|.+.|.+++|+|++.+||+|+.||.|+|||
T Consensus       277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99999999999999999999999988876 7789999999999999999999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.4e-41  Score=366.74  Aligned_cols=284  Identities=18%  Similarity=0.370  Sum_probs=260.0

Q ss_pred             eeeeeecCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEECCCCce--eEEeccCCCCEEEEEECCCCCeEEEEeCCCc
Q 003842          504 EANSVRASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSFDKT  577 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspd----g~~Lasgs~Dg~I~vWdl~t~~~--~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~  577 (792)
                      .++.+.+|.+.|++++|+++    +.+||+|+.|++|+|||+.+.+.  ...+.+|...|.+++|++++.+|++++.|++
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~  103 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH  103 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            34667899999999999985    67999999999999999987654  4568899999999999999999999999999


Q ss_pred             EEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEE
Q 003842          578 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLA  654 (792)
Q Consensus       578 V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla  654 (792)
                      |+|||+.+ +..+..+..|...+.+++|+|++. +|++++.||.|++||+++++....+..   .+.+++|+|++.++++
T Consensus       104 i~lWd~~~-~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las  181 (321)
T 3ow8_A          104 IRLWDLEN-GKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS  181 (321)
T ss_dssp             EEEEETTT-TEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             EEEEECCC-CCEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence            99999997 677888888999999999999976 566999999999999999988777654   4678999999999999


Q ss_pred             EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC
Q 003842          655 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP  733 (792)
Q Consensus       655 ~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp  733 (792)
                      ++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.| .|+|||++++   .++..+.+|...|.+++|+|
T Consensus       182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp  258 (321)
T 3ow8_A          182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCP  258 (321)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECT
T ss_pred             EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---ceeEEEcCCCCceEEEEECC
Confidence            9999999999999999999999999999999999999999999999 9999999876   67788889999999999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          734 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       734 dg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ++.+|++++.|+.|+|||+.+++++ .+.+|...|++++|++++++|++++.||.|+|||
T Consensus       259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            9999999999999999999999887 6789999999999999999999999999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.1e-40  Score=364.21  Aligned_cols=289  Identities=19%  Similarity=0.353  Sum_probs=259.5

Q ss_pred             cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEE
Q 003842          500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR  579 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~  579 (792)
                      +.++....+.+|.+.|+|++|+||+++||+|+.||+|+|||..+++....+..|...|.+++|+|++.+|++|+.|+.|+
T Consensus        52 ~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~  131 (354)
T 2pbi_B           52 FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS  131 (354)
T ss_dssp             CCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred             cccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence            44567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCC-----ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEec--CC
Q 003842          580 VWDADNPG-----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQP--HL  649 (792)
Q Consensus       580 IWdl~s~~-----~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp--~~  649 (792)
                      +|++....     .....+..|...|.+++|++++. .|++++.|++|++||+++++++..+.+   .+.++.|++  ++
T Consensus       132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g  210 (354)
T 2pbi_B          132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG  210 (354)
T ss_dssp             EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC
T ss_pred             EEEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCC
Confidence            99986421     34567778999999999999976 455999999999999999999888765   456778877  45


Q ss_pred             CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec--CCCce
Q 003842          650 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC--NGNKF  726 (792)
Q Consensus       650 ~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~--~~~~i  726 (792)
                      ..+++++.|+.|++||+++++++..+.+|...|++++|+|++.+|++++.| .|++||++..   ..+..+..  +...+
T Consensus       211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~  287 (354)
T 2pbi_B          211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGA  287 (354)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCcccce
Confidence            789999999999999999999999999999999999999999999999999 9999999875   44444433  23468


Q ss_pred             EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          727 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       727 ~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .+++|+|++.+|++++.|+.|+|||+.+++.+ .+.+|.+.|++++|+||+++|++|+.||.|+||+
T Consensus       288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             eEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999999999888876 6789999999999999999999999999999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.5e-41  Score=376.76  Aligned_cols=291  Identities=17%  Similarity=0.363  Sum_probs=258.2

Q ss_pred             CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcE
Q 003842          499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV  578 (792)
Q Consensus       499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V  578 (792)
                      ...+...+.+.+|.+.|+|++|+|++++||+|+.||+|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|
T Consensus        53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v  132 (380)
T 3iz6_a           53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSAC  132 (380)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred             cceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcE
Confidence            34556788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCC------ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--------CCeeEEE
Q 003842          579 RVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQMR  644 (792)
Q Consensus       579 ~IWdl~s~~------~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--------~~~~~v~  644 (792)
                      +|||+.+..      .....+.+|.+.|.++.|.|++...|++|+.|++|++||+++++++..+.        ..+.++.
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~  212 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS  212 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred             EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence            999997521      23456789999999999999877778899999999999999999887662        3466788


Q ss_pred             Eec-CCCEEEEEEcCCeEEEEECC-CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec
Q 003842          645 FQP-HLGRYLAAAAENVVSILDAE-TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC  721 (792)
Q Consensus       645 ~sp-~~~~lla~s~dg~I~i~D~~-t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~  721 (792)
                      |++ ++..+++++.|+.|++||++ ..+.+..+.+|...|++++|+|++.+|++++.| .|++||++++   ..+..+..
T Consensus       213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~  289 (380)
T 3iz6_a          213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNR  289 (380)
T ss_dssp             ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECC
T ss_pred             eecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecc
Confidence            876 67889999999999999998 457788899999999999999999999999999 9999999876   45555443


Q ss_pred             CC-------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EE----cccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003842          722 NG-------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL----TAHEGLIAALAVSTETGYVASASHDKFVK  789 (792)
Q Consensus       722 ~~-------~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~----~~h~~~V~sl~fspdg~~LaSgs~DG~I~  789 (792)
                      +.       ..+.+++|+|++++|++|+.||.|++||+.+++.+ .+    .+|.+.|++++|+||+.+|++|+.||.|+
T Consensus       290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~  369 (380)
T 3iz6_a          290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLK  369 (380)
T ss_dssp             CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEE
T ss_pred             cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEE
Confidence            32       24889999999999999999999999999988876 34    57999999999999999999999999999


Q ss_pred             EeC
Q 003842          790 LWK  792 (792)
Q Consensus       790 IWd  792 (792)
                      ||+
T Consensus       370 iW~  372 (380)
T 3iz6_a          370 IWA  372 (380)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.4e-40  Score=390.54  Aligned_cols=349  Identities=19%  Similarity=0.287  Sum_probs=278.9

Q ss_pred             cceEEEEeCCCeeeecCCC-----eeEeCCCcchhhcccccccCCCCCCceeee-ccCCCC-----CCCCCCCcceeccC
Q 003842          430 KPLMMFGTDGAGTLTSPSN-----QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDT-----DPRDAGGRGMDVSQ  498 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~-----~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~-l~~d~~-----~~~d~~~~~~d~~~  498 (792)
                      ...+.|+|||..+++.+..     .||.+.+++....+..      ....+.+. +.+++.     ...|..+++|+...
T Consensus       106 v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~g------h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~  179 (611)
T 1nr0_A          106 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG------QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP  179 (611)
T ss_dssp             EEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC------CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT
T ss_pred             eEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecC------CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC
Confidence            4468999999998876532     4544445543332221      12223333 333332     34677888888543


Q ss_pred             CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-------cCCCCEEEEEECCCCCeEEE
Q 003842          499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-------EHSSLITDVRFSPSMPRLAT  571 (792)
Q Consensus       499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-------~h~~~V~~i~fspdg~~Las  571 (792)
                         .+....+.+|.+.|++++|+|||++||+|+.|++|+|||+.+++.+..+.       +|...|++++|+|++++|++
T Consensus       180 ---~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s  256 (611)
T 1nr0_A          180 ---FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS  256 (611)
T ss_dssp             ---BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred             ---CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEE
Confidence               46778899999999999999999999999999999999999999888884       79999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCCc------------------------------------------eeEEecccCCCeEEEEEcCCC
Q 003842          572 SSFDKTVRVWDADNPGY------------------------------------------SLRTFMGHSASVMSLDFHPNK  609 (792)
Q Consensus       572 gs~Dg~V~IWdl~s~~~------------------------------------------~i~~~~~h~~~V~sl~fspd~  609 (792)
                      ++.|++|+|||+.+...                                          ....+.+|...|++++|+|++
T Consensus       257 ~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg  336 (611)
T 1nr0_A          257 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG  336 (611)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC
Confidence            99999999999986221                                          123445799999999999997


Q ss_pred             CeEEEEEeCCCcEEEEEcCCCeeEEEe-----------------------------------------------------
Q 003842          610 DDLICSCDGDGEIRYWSINNGSCTRVF-----------------------------------------------------  636 (792)
Q Consensus       610 ~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----------------------------------------------------  636 (792)
                      . +|++++.|+.|++||+.++.+...+                                                     
T Consensus       337 ~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~  415 (611)
T 1nr0_A          337 K-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL  415 (611)
T ss_dssp             S-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE
T ss_pred             C-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCc
Confidence            6 5569999999999999876543221                                                     


Q ss_pred             --------------------------------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE--EEEecCCCCCe
Q 003842          637 --------------------------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC--RLSLQGHTKPI  682 (792)
Q Consensus       637 --------------------------------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~--~~~l~~h~~~V  682 (792)
                                                      ...+.+++|+|++..+++++.|+.|++||+.++..  +.. .+|...|
T Consensus       416 ~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v  494 (611)
T 1nr0_A          416 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEI  494 (611)
T ss_dssp             EEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCE
T ss_pred             EEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCce
Confidence                                            01235688999999999999999999999987653  233 6799999


Q ss_pred             EEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE--eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--E
Q 003842          683 DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE--LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--T  757 (792)
Q Consensus       683 ~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~--~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~--~  757 (792)
                      ++|+|+|+|++|++++.| .|++||+.+..  +++..  +..|...|.+++|+|++++|++++.|++|+|||+.++.  .
T Consensus       495 ~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~  572 (611)
T 1nr0_A          495 TSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP  572 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC
T ss_pred             EEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccccc
Confidence            999999999999999999 99999997621  22222  33488999999999999999999999999999998764  2


Q ss_pred             -EEEccc-CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          758 -MTLTAH-EGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       758 -~~~~~h-~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                       ..+.+| ...|++++|+|++. |++++.||+|+|||
T Consensus       573 ~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~  608 (611)
T 1nr0_A          573 IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN  608 (611)
T ss_dssp             EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             chhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence             355688 89999999999998 99999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.7e-40  Score=391.75  Aligned_cols=350  Identities=16%  Similarity=0.259  Sum_probs=277.1

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeee-ccCCCCCC------CC--CCCcceecc
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDTDP------RD--AGGRGMDVS  497 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~-l~~d~~~~------~d--~~~~~~d~~  497 (792)
                      ...+.|+|||.++++++.+   +|||+.+++..... .+ .  .....+..+ +++++...      .+  ..+.+|+. 
T Consensus        62 v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~-~~-~--~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~-  136 (611)
T 1nr0_A           62 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT-TI-P--VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT-  136 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE-EE-E--CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-
T ss_pred             eEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeE-ee-c--ccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC-
Confidence            4578999999999986544   89999765432111 11 1  112223333 33333211      11  23344442 


Q ss_pred             CCcceeeeeeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 003842          498 QGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK  576 (792)
Q Consensus       498 ~~~~~~~~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg  576 (792)
                       +   +....+.+|...|++++|+|++. +|++|+.|++|++||..+++++..+.+|...|++++|+|++++|++|+.|+
T Consensus       137 -~---~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~  212 (611)
T 1nr0_A          137 -G---TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG  212 (611)
T ss_dssp             -C---CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             -C---CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCC
Confidence             2   34567899999999999999987 699999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEeCCCCCceeEEec-------ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee------------
Q 003842          577 TVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------------  637 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~~~~-------~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~------------  637 (792)
                      +|+|||+.+ +..+..+.       +|...|.+++|+|++. +|++++.|++|++||+++++++..+.            
T Consensus       213 ~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~  290 (611)
T 1nr0_A          213 TIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI  290 (611)
T ss_dssp             CEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE
T ss_pred             cEEEEECCC-CcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEE
Confidence            999999987 56666663       7999999999999976 56699999999999999887654332            


Q ss_pred             ----------------------------------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe-c------
Q 003842          638 ----------------------------------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-Q------  676 (792)
Q Consensus       638 ----------------------------------~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l-~------  676 (792)
                                                        ..+.+++|+|++.++++++.|+.|++||+.+++....+ .      
T Consensus       291 ~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v  370 (611)
T 1nr0_A          291 IWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI  370 (611)
T ss_dssp             EECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred             EEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceE
Confidence                                              24667899999999999999999999999876543321 0      


Q ss_pred             ---------------------------------------------------------------------------CCCCC
Q 003842          677 ---------------------------------------------------------------------------GHTKP  681 (792)
Q Consensus       677 ---------------------------------------------------------------------------~h~~~  681 (792)
                                                                                                 .|...
T Consensus       371 ~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~  450 (611)
T 1nr0_A          371 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN  450 (611)
T ss_dssp             EEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred             EEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCC
Confidence                                                                                       02345


Q ss_pred             eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CcEEE
Q 003842          682 IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NKTMT  759 (792)
Q Consensus       682 V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~-~~~~~  759 (792)
                      +.+++|+|+|++|++++.| .|++||+..+. ...+.. ..|...|.+++|+|++++|++++.|+.|++||+.+ ++++.
T Consensus       451 v~~va~spdg~~lasgs~D~~v~lwd~~~~~-~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~  528 (611)
T 1nr0_A          451 SSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH  528 (611)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEEEETTE-EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred             ceEEEEeCCCCEEEEeCCCCeEEEEEccCCc-eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee
Confidence            7789999999999999999 99999997642 122333 67889999999999999999999999999999987 54442


Q ss_pred             ---EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          760 ---LTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       760 ---~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                         +..|...|++++|+||+++||+|+.|++|+|||
T Consensus       529 ~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~  564 (611)
T 1nr0_A          529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN  564 (611)
T ss_dssp             CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeeeeecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence               234999999999999999999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-39  Score=349.41  Aligned_cols=283  Identities=19%  Similarity=0.331  Sum_probs=252.7

Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      ++..+++.+|.+.|++++|+|++++|++|+.||.|+|||++++..+..+..|...|.+++|++++++|++|+.|+.|+||
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            35667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEEee---CCeeEEEEec-CCCEEEEEE
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---GGTAQMRFQP-HLGRYLAAA  656 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~---~~~~~v~~sp-~~~~lla~s  656 (792)
                      |+.+ +..+..+.+|...|.+++|+|++. +|++|+.|++|++||++++. +...+.   ..+.+++|+| ++..+++++
T Consensus        83 d~~~-~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs  160 (304)
T 2ynn_A           83 NYNT-GEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (304)
T ss_dssp             ETTT-CCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred             ECCC-CcEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence            9998 678888999999999999999976 56699999999999999874 444444   4578899999 567899999


Q ss_pred             cCCeEEEEECCCCeEEEEec-CCCCCeEEEEEcC--CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe
Q 003842          657 AENVVSILDAETQACRLSLQ-GHTKPIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH  732 (792)
Q Consensus       657 ~dg~I~i~D~~t~~~~~~l~-~h~~~V~sv~~sp--dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fs  732 (792)
                      .|+.|++||+++......+. +|...|..++|++  ++.+|++++.| .|++||++++   .++..+.+|...|.+++|+
T Consensus       161 ~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~  237 (304)
T 2ynn_A          161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFH  237 (304)
T ss_dssp             TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEC
T ss_pred             CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEEC
Confidence            99999999998876655554 4668899999987  77899999999 9999999876   7889999999999999999


Q ss_pred             CCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC--EEEEEeCCCcEE
Q 003842          733 PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG--YVASASHDKFVK  789 (792)
Q Consensus       733 pdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~--~LaSgs~DG~I~  789 (792)
                      |++.+|++++.||.|+|||+.+++++ .+..|...+++++|+|++.  +|++|++||.+.
T Consensus       238 p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~  297 (304)
T 2ynn_A          238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV  297 (304)
T ss_dssp             SSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence            99999999999999999999999887 6778899999999999875  688887777543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-39  Score=354.63  Aligned_cols=291  Identities=25%  Similarity=0.434  Sum_probs=249.0

Q ss_pred             ceeeeeeeecCCC-CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE---EeccCCCCEEEEEECCCCCeEEEEeCCC
Q 003842          501 SFKEANSVRASTS-KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT---NLEEHSSLITDVRFSPSMPRLATSSFDK  576 (792)
Q Consensus       501 ~~~~~~~l~~H~~-~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~---~l~~h~~~V~~i~fspdg~~Lasgs~Dg  576 (792)
                      .+..+..+.+|.+ .|++++|+|+|++||+|+.|++|+|||++++....   ...+|...|++++|+|++++|++|+.|+
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            4567888999998 99999999999999999999999999998876432   2368999999999999999999999999


Q ss_pred             cEEEEeCCCCC-ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---eEEEee---CCeeEEEEecCC
Q 003842          577 TVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFK---GGTAQMRFQPHL  649 (792)
Q Consensus       577 ~V~IWdl~s~~-~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~---~~~~~~---~~~~~v~~sp~~  649 (792)
                      +|+|||+.... ..+..+.+|...|.+++|+|++. +|++|+.|+.|++||++.+.   ++..+.   ..+.+++|+|++
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~  162 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ  162 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence            99999998643 45778899999999999999976 66799999999999998764   334443   457889999999


Q ss_pred             CEEEEEEcCCeEEEEECCCCe--EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC------------cc
Q 003842          650 GRYLAAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------------GE  714 (792)
Q Consensus       650 ~~lla~s~dg~I~i~D~~t~~--~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~------------~~  714 (792)
                      ..+++++.|+.|++||.+++.  +...+.+|...|++++|+|++++|++++.| .|+|||+.....            ..
T Consensus       163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~  242 (345)
T 3fm0_A          163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK  242 (345)
T ss_dssp             SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred             CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence            999999999999999998875  557889999999999999999999999999 999999743221            13


Q ss_pred             eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--------EE--EEcccCCCeEEEEEeCCC-CEEEEE
Q 003842          715 CVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--------TM--TLTAHEGLIAALAVSTET-GYVASA  782 (792)
Q Consensus       715 ~i~~~~~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~--------~~--~~~~h~~~V~sl~fspdg-~~LaSg  782 (792)
                      ++..+.. |...|.+++|++++..|++++.|+.|++|+...+.        ..  ...+|...|++++|+|++ .+||+|
T Consensus       243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~  322 (345)
T 3fm0_A          243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC  322 (345)
T ss_dssp             EEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred             eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence            3444444 77889999999999999999999999999987642        11  235799999999999988 599999


Q ss_pred             eCCCcEEEeC
Q 003842          783 SHDKFVKLWK  792 (792)
Q Consensus       783 s~DG~I~IWd  792 (792)
                      +.||.|+||+
T Consensus       323 s~Dg~v~~W~  332 (345)
T 3fm0_A          323 SDDGEVAFWK  332 (345)
T ss_dssp             ETTSCEEEEE
T ss_pred             CCCCcEEEEE
Confidence            9999999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.8e-39  Score=357.57  Aligned_cols=281  Identities=27%  Similarity=0.455  Sum_probs=248.2

Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC------------------CEEEEEECCCCCeEE
Q 003842          509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS------------------LITDVRFSPSMPRLA  570 (792)
Q Consensus       509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~------------------~V~~i~fspdg~~La  570 (792)
                      .+|.+.|.|++|+|||++||+|+ ++.++||++.+++.+..+..|..                  .|++++|+|++++|+
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            36999999999999999999986 78999999999998888876542                  499999999999999


Q ss_pred             EEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--CCeeEEEEec-
Q 003842          571 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQP-  647 (792)
Q Consensus       571 sgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp-  647 (792)
                      +|+.|+.|+|||+.+ +..+..+.+|...|.+++|+|++. +|++++.|++|++||++++++...+.  ..+..++|+| 
T Consensus       140 s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~  217 (393)
T 1erj_A          140 TGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG  217 (393)
T ss_dssp             EEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred             EEcCCCeEEEEECCC-CcEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECC
Confidence            999999999999987 677888999999999999999986 55699999999999999998877654  4678899999 


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCeEEEEe-------cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC-------
Q 003842          648 HLGRYLAAAAENVVSILDAETQACRLSL-------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-------  712 (792)
Q Consensus       648 ~~~~lla~s~dg~I~i~D~~t~~~~~~l-------~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~-------  712 (792)
                      ++.++++++.|+.|++||+++++.+..+       .+|...|.+++|+|++++|++++.| .|++||+++...       
T Consensus       218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  297 (393)
T 1erj_A          218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  297 (393)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence            7888999999999999999999887776       5789999999999999999999999 999999976422       


Q ss_pred             --cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeC------CCCEEEEEe
Q 003842          713 --GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVST------ETGYVASAS  783 (792)
Q Consensus       713 --~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fsp------dg~~LaSgs  783 (792)
                        ..+...+.+|...|.+++|++++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|++      ++.+||+|+
T Consensus       298 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs  377 (393)
T 1erj_A          298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS  377 (393)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred             CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence              2456677889999999999999999999999999999999999877 6789999999999986      688999999


Q ss_pred             CCCcEEEeC
Q 003842          784 HDKFVKLWK  792 (792)
Q Consensus       784 ~DG~I~IWd  792 (792)
                      .||.|+||+
T Consensus       378 ~Dg~i~iW~  386 (393)
T 1erj_A          378 GDCKARIWK  386 (393)
T ss_dssp             TTSEEEEEE
T ss_pred             CCCcEEECc
Confidence            999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.3e-38  Score=370.55  Aligned_cols=342  Identities=26%  Similarity=0.464  Sum_probs=286.0

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeee-ccCCCC----CCCCCCCcceeccCCcc
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDT----DPRDAGGRGMDVSQGFS  501 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~-l~~d~~----~~~d~~~~~~d~~~~~~  501 (792)
                      ...+.|++||.++++++.+   ++||.. ++.+..+..      ....+... +.++..    ...+...++|+...   
T Consensus       224 v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~------~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~---  293 (577)
T 2ymu_A          224 VRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG------HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG---  293 (577)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECC------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEec------CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---
Confidence            3468899999998875444   899964 333222211      11222222 333321    23566677887532   


Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                       +.+..+.+|...|++++|+|++++|++++.|+.|++||+.. ..+..+.+|...|++++|+|++++|++++.||.|++|
T Consensus       294 -~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~  371 (577)
T 2ymu_A          294 -QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW  371 (577)
T ss_dssp             -CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             -cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence             46678899999999999999999999999999999999765 5567788999999999999999999999999999999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcC
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~d  658 (792)
                      |..  +..+..+.+|...|.+++|+|++.. |++++.|+.|++||.. ++.+..+.   ..+.+++|+|++..+++++.|
T Consensus       372 ~~~--~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d  447 (577)
T 2ymu_A          372 NRN--GQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDD  447 (577)
T ss_dssp             ETT--CCEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cCC--CCEEEEecCCCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence            975  5678888999999999999999875 5589999999999964 55555554   457789999999999999999


Q ss_pred             CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003842          659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~  737 (792)
                      +.|++||. +++.+..+.+|...|++++|+|++++|++++.| .|++||.. +   +++..+.+|...|++++|+|++++
T Consensus       448 ~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~  522 (577)
T 2ymu_A          448 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQT  522 (577)
T ss_dssp             SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSC
T ss_pred             CEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-C---CEEEEEeCCCCCEEEEEEcCCCCE
Confidence            99999996 567888899999999999999999999999999 99999963 3   678889999999999999999999


Q ss_pred             EEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          738 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       738 L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |++++.|+.|+|||........+.+|.+.|++++|+||+++|+|++.||+|+|||
T Consensus       523 l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          523 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            9999999999999976554558889999999999999999999999999999998

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.2e-38  Score=342.02  Aligned_cols=287  Identities=24%  Similarity=0.454  Sum_probs=257.3

Q ss_pred             ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003842          501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV  580 (792)
Q Consensus       501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I  580 (792)
                      .+.....+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++....+.+|...|.+++|+|++++|++++.|+.|+|
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI   91 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence            35667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc
Q 003842          581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~  657 (792)
                      ||+++ +..+..+.+|...|.+++|+|++. +|++|+.|+.|++||+++++++..+.   ..+.++.|++++..+++++.
T Consensus        92 wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
T 4ery_A           92 WDVSS-GKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  169 (312)
T ss_dssp             EETTT-CCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EECCC-CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            99997 677888999999999999999976 56699999999999999999888775   35778999999999999999


Q ss_pred             CCeEEEEECCCCeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCce---EEEEEe
Q 003842          658 ENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF---HSCVFH  732 (792)
Q Consensus       658 dg~I~i~D~~t~~~~~~l~-~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i---~si~fs  732 (792)
                      |+.|++||+++++.+..+. .+...+.+++|+|++++|++++.| .|++||++++   +++..+..+....   ......
T Consensus       170 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~  246 (312)
T 4ery_A          170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSV  246 (312)
T ss_dssp             TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEEC
T ss_pred             CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEe
Confidence            9999999999998877764 466789999999999999999999 9999999876   6777777665543   222334


Q ss_pred             CCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEe--CCCcEEEeC
Q 003842          733 PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK  792 (792)
Q Consensus       733 pdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs--~DG~I~IWd  792 (792)
                      +++.+|++++.||.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++  .|+.|+||+
T Consensus       247 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~  309 (312)
T 4ery_A          247 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK  309 (312)
T ss_dssp             SSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred             CCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence            67889999999999999999999877 7789999999999999999999997  699999995

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.1e-38  Score=345.12  Aligned_cols=285  Identities=21%  Similarity=0.393  Sum_probs=247.8

Q ss_pred             cceeeeeeeecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCC-----CceeEEeccCCCCEEEEEECCCCCeEEEEe
Q 003842          500 FSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDT-----LKSKTNLEEHSSLITDVRFSPSMPRLATSS  573 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t-----~~~~~~l~~h~~~V~~i~fspdg~~Lasgs  573 (792)
                      ..+....++.+|.+.|++++|++++ ++|++|+.|++|++||+..     +..+..+.+|...|++++|++++++|++|+
T Consensus         5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A            5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS   84 (319)
T ss_dssp             EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence            3456778899999999999999965 8999999999999999864     345678899999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCC-
Q 003842          574 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHL-  649 (792)
Q Consensus       574 ~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~-  649 (792)
                      .|++|+|||+.+ +..+..+.+|...|.+++|+|++. +|++|+.|++|++||++. .++..+.   ..+..++|.|.. 
T Consensus        85 ~D~~v~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~  161 (319)
T 3frx_A           85 WDKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK  161 (319)
T ss_dssp             TTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC--
T ss_pred             CCCEEEEEECCC-CCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC
Confidence            999999999997 778889999999999999999876 566999999999999975 4444443   356778888853 


Q ss_pred             -----CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC
Q 003842          650 -----GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG  723 (792)
Q Consensus       650 -----~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~  723 (792)
                           ..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.| .|+|||+.++   +++..+.. .
T Consensus       162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-~  237 (319)
T 3frx_A          162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA-Q  237 (319)
T ss_dssp             ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-C
T ss_pred             CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC-C
Confidence                 479999999999999999999999999999999999999999999999999 9999999876   56666654 4


Q ss_pred             CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-E--------cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          724 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-L--------TAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       724 ~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-~--------~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ..+.+++|+|++.+|++++. +.|++|++.....+. +        ..|...|.+++|+|||++|++|+.||.|+|||
T Consensus       238 ~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence            67999999999998887765 569999998876652 2        23567899999999999999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.7e-39  Score=353.38  Aligned_cols=242  Identities=19%  Similarity=0.274  Sum_probs=211.9

Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE----eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN----LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~----l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      ..|...|.+++|++|+ .|++|+.||+|+|||+++++.+..    +.+|...|++|+|+|++++|++|+.|++|+|||++
T Consensus        79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~  157 (344)
T 4gqb_B           79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA  157 (344)
T ss_dssp             EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            3466789999999996 788999999999999998876544    34899999999999999999999999999999999


Q ss_pred             CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003842          585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL  664 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~  664 (792)
                      + +..+..+.+|...|++++|++++..+|++|+.|++|++||+++++....+..                          
T Consensus       158 ~-~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--------------------------  210 (344)
T 4gqb_B          158 Q-QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC--------------------------  210 (344)
T ss_dssp             T-TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---------------------------
T ss_pred             C-CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec--------------------------
Confidence            7 7888999999999999999999988999999999999999988776544321                          


Q ss_pred             ECCCCeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEE
Q 003842          665 DAETQACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVI  741 (792)
Q Consensus       665 D~~t~~~~~~l~~h~~~V~sv~~spd-g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg-~~L~sg  741 (792)
                                 ..|...+.+++|+|+ +++|++++.| .|+|||++++   +++..+.+|...|++++|+|++ ++|+++
T Consensus       211 -----------~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---~~~~~~~~h~~~v~~v~fsp~g~~~lasg  276 (344)
T 4gqb_B          211 -----------SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---SCVLSSAVHSQCVTGLVFSPHSVPFLASL  276 (344)
T ss_dssp             --------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred             -----------ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC---cEEEEEcCCCCCEEEEEEccCCCeEEEEE
Confidence                       124456889999984 5688999988 9999999876   6778889999999999999998 578999


Q ss_pred             EcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEeCCCcEEEeC
Q 003842          742 GCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASASHDKFVKLWK  792 (792)
Q Consensus       742 s~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~-~LaSgs~DG~I~IWd  792 (792)
                      +.|++|+|||+.+++++.+.+|.+.|++++|+|++. +|++|+.||+|++|+
T Consensus       277 s~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~  328 (344)
T 4gqb_B          277 SEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV  328 (344)
T ss_dssp             ETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             eCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence            999999999999999999999999999999999886 677999999999995

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.4e-38  Score=345.57  Aligned_cols=286  Identities=19%  Similarity=0.364  Sum_probs=242.2

Q ss_pred             cceeeeeeeecCCCCeEEEEE-----cC-CCCEEEEEeCCCeEEEEECCCC-------ceeEEeccCCCCEEEEEECCCC
Q 003842          500 FSFKEANSVRASTSKVICCHF-----SS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM  566 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~V~~laf-----sp-dg~~Lasgs~Dg~I~vWdl~t~-------~~~~~l~~h~~~V~~i~fspdg  566 (792)
                      ..++....+++|.+.|++++|     ++ |+++||+|+.|++|+|||+.+.       .....+.+|...|++++|+|++
T Consensus         9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~   88 (343)
T 2xzm_R            9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN   88 (343)
T ss_dssp             EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred             eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence            345677889999999999999     77 9999999999999999998753       4567788999999999999999


Q ss_pred             CeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE-----eeCCee
Q 003842          567 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----FKGGTA  641 (792)
Q Consensus       567 ~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~-----~~~~~~  641 (792)
                      .+|++|+.|++|+|||+++ +..+..+.+|...|.+++|+|++. +|++++.|+.|++||+........     ....+.
T Consensus        89 ~~l~s~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRT-GTTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVS  166 (343)
T ss_dssp             TEEEEEETTSEEEEEETTS-SCEEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEE
T ss_pred             CEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCceeeeecccCCCceee
Confidence            9999999999999999997 677888999999999999999976 556999999999999984433322     223577


Q ss_pred             EEEEecCC----------CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003842          642 QMRFQPHL----------GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG  710 (792)
Q Consensus       642 ~v~~sp~~----------~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~  710 (792)
                      +++|+|++          .++++++.|+.|++|| ........+.+|...|.+++|+|+|++|++++.| .|++||+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~  245 (343)
T 2xzm_R          167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL  245 (343)
T ss_dssp             EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred             eeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            89999886          6899999999999999 4567778889999999999999999999999999 9999999543


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---EEc-----------ccCCCeEEEEEeCCC
Q 003842          711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLT-----------AHEGLIAALAVSTET  776 (792)
Q Consensus       711 ~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~---~~~-----------~h~~~V~sl~fspdg  776 (792)
                      ..  ....+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++..   .+.           +|...|.+++|+|++
T Consensus       246 ~~--~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g  321 (343)
T 2xzm_R          246 TY--PQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG  321 (343)
T ss_dssp             SS--CSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS
T ss_pred             cc--cceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC
Confidence            22  22222 2455799999999998765 556788999999876532   222           678899999999999


Q ss_pred             CEEEEEeCCCcEEEeC
Q 003842          777 GYVASASHDKFVKLWK  792 (792)
Q Consensus       777 ~~LaSgs~DG~I~IWd  792 (792)
                      ++|++|+.||.|++|+
T Consensus       322 ~~l~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          322 KKLFAGFTDGVIRTFS  337 (343)
T ss_dssp             CCEEEEETTSEEEEEE
T ss_pred             CeEEEecCCceEEEEE
Confidence            9999999999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-38  Score=341.06  Aligned_cols=287  Identities=22%  Similarity=0.342  Sum_probs=236.6

Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEe-cc-CCCCEEEEEECCCCCeEEEEeCCCc
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNL-EE-HSSLITDVRFSPSMPRLATSSFDKT  577 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~--~~~~~l-~~-h~~~V~~i~fspdg~~Lasgs~Dg~  577 (792)
                      ++.+..+.+|.+.|++++|+++  +||+|+.|++|+|||+.++  ..+..+ .. |...|++|+|+|++++|++|+.|++
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~   81 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST   81 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence            4577889999999999999998  9999999999999999875  445556 44 9999999999999999999999999


Q ss_pred             EEEEeCCCC------CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC----eeEEEee---CCeeEEE
Q 003842          578 VRVWDADNP------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVFK---GGTAQMR  644 (792)
Q Consensus       578 V~IWdl~s~------~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~~---~~~~~v~  644 (792)
                      |+|||++..      ...+..+.+|...|.+++|+|++. +|++|+.|++|++||++..    +++..+.   ..+.+++
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            999999632      245677889999999999999976 6679999999999999532    4555554   4578899


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCC--eEEEEecCCCCCeEEEEEcCC--CCEEEEEeCC-eEEEEECCCCCCc-----c
Q 003842          645 FQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPS--GELLASVSED-SVRVWTVGSGSEG-----E  714 (792)
Q Consensus       645 ~sp~~~~lla~s~dg~I~i~D~~t~--~~~~~l~~h~~~V~sv~~spd--g~~Las~s~d-~I~IwDl~s~~~~-----~  714 (792)
                      |+|++..|++++.|+.|++||.+++  +++..+.+|...|.+++|+|+  +.+|++++.| .|++||+..+...     .
T Consensus       161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~  240 (330)
T 2hes_X          161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV  240 (330)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence            9999999999999999999999876  678889999999999999998  7799999999 9999999754221     3


Q ss_pred             eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE--E-E-EcccCC-CeEEEEEeC--CCCEEEEEeCCC
Q 003842          715 CVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT--M-T-LTAHEG-LIAALAVST--ETGYVASASHDK  786 (792)
Q Consensus       715 ~i~~~~~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~--~-~-~~~h~~-~V~sl~fsp--dg~~LaSgs~DG  786 (792)
                      +...+.. |...|.+++|++++ +|++++.||.|+|||..+++.  + . ..+|.. .|++++|+|  ++.+||+|+.||
T Consensus       241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg  319 (330)
T 2hes_X          241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG  319 (330)
T ss_dssp             EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred             EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence            3444444 78899999999765 799999999999999988742  2 2 356877 899999999  789999999999


Q ss_pred             cEEEeC
Q 003842          787 FVKLWK  792 (792)
Q Consensus       787 ~I~IWd  792 (792)
                      .|+|||
T Consensus       320 ~v~~W~  325 (330)
T 2hes_X          320 IVNFWS  325 (330)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-38  Score=350.76  Aligned_cols=280  Identities=13%  Similarity=0.177  Sum_probs=234.9

Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCcee----EEeccCCCCEEEEEECCCCCeEEEEeCCCc
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGH------DKKAVLWHTDTLKSK----TNLEEHSSLITDVRFSPSMPRLATSSFDKT  577 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~------Dg~I~vWdl~t~~~~----~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~  577 (792)
                      ...|...|++++|+|||++||+|+.      |+.|++|+..++...    .....|...|++++|+|++ .+++++.||+
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~~l~~s~dg~  116 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-GILVASDSGA  116 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-EEEEEETTSC
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-CEEEEECCCE
Confidence            3579999999999999999999997      788999998776543    3345788999999999997 4667888999


Q ss_pred             EEEEeCCCCCce---eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCC-
Q 003842          578 VRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLG-  650 (792)
Q Consensus       578 V~IWdl~s~~~~---i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~-  650 (792)
                      |+|||+.++...   .....+|...|++++|+|++. +|++|+.|+.|++||+++++++..+..   .+.+++|++++. 
T Consensus       117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~  195 (357)
T 4g56_B          117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT  195 (357)
T ss_dssp             EEEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred             EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence            999999874322   234457999999999999976 566999999999999999999888764   577899999875 


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEe--cCCCCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCce
Q 003842          651 RYLAAAAENVVSILDAETQACRLSL--QGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF  726 (792)
Q Consensus       651 ~lla~s~dg~I~i~D~~t~~~~~~l--~~h~~~V~sv~~spd-g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i  726 (792)
                      .+++++.|+.|++||+++++.+..+  ..|...+.+++|+|+ +.+|++++.| .|++||++++   .++..+..+...|
T Consensus       196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v  272 (357)
T 4g56_B          196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---DSAQTSAVHSQNI  272 (357)
T ss_dssp             CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---GGCEEECCCSSCE
T ss_pred             eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC---cEeEEEeccceeE
Confidence            6788889999999999998776554  346778999999997 4688899988 9999999876   6777888999999


Q ss_pred             EEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeC-CCCEEEEEeCCCcEEEeC
Q 003842          727 HSCVFHPTY-PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK  792 (792)
Q Consensus       727 ~si~fspdg-~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fsp-dg~~LaSgs~DG~I~IWd  792 (792)
                      .+++|+|++ ++|++++.|++|+|||+.+++++...+|.+.|++|+|+| |+.+|++|+.||.|+||+
T Consensus       273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          273 TGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             EEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence            999999987 578899999999999999999998889999999999998 899999999999999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-37  Score=336.48  Aligned_cols=283  Identities=18%  Similarity=0.278  Sum_probs=254.2

Q ss_pred             eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      .....+.+|.+.|+|++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  102 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD  102 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCC-----CcEEEEEcCCCeeE-----------EEee---C--Cee
Q 003842          583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCT-----------RVFK---G--GTA  641 (792)
Q Consensus       583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D-----g~I~iwdl~~~~~~-----------~~~~---~--~~~  641 (792)
                      +.+ +..+..+. +...|.+++|+|++..+ ++++.+     +.|++||+......           ..+.   .  .+.
T Consensus       103 ~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l-~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          103 VSN-GQCVATWK-SPVPVKRVEFSPCGNYF-LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             TTT-CCEEEEEE-CSSCEEEEEECTTSSEE-EEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             CCC-CcEEEEee-cCCCeEEEEEccCCCEE-EEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence            997 56666666 88999999999998754 477777     99999999865421           1111   1  678


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 003842          642 QMRFQPHLGRYLAAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL  719 (792)
Q Consensus       642 ~v~~sp~~~~lla~s~dg~I~i~D~~t-~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~  719 (792)
                      +++|++++..+++++.|+.|++||+++ .+.+..+..|...|.+++|+|++++|++++.| .|++||++++   ..+..+
T Consensus       180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~  256 (369)
T 3zwl_B          180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKY  256 (369)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEE
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---ceeeee
Confidence            899999999999999999999999999 78889999999999999999999999999988 9999999876   455555


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcCC--------------eEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeC
Q 003842          720 SCNGNKFHSCVFHPTYPSLLVIGCYQ--------------SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASH  784 (792)
Q Consensus       720 ~~~~~~i~si~fspdg~~L~sgs~dg--------------~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~  784 (792)
                      . +...+..++|+|++.++++++.++              .|++||+.+++.+ .+.+|...|++++|+|++++|++++.
T Consensus       257 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  335 (369)
T 3zwl_B          257 E-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE  335 (369)
T ss_dssp             E-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             c-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC
Confidence            5 677899999999999999999988              8999999999887 67789999999999999999999999


Q ss_pred             CCcEEEeC
Q 003842          785 DKFVKLWK  792 (792)
Q Consensus       785 DG~I~IWd  792 (792)
                      ||.|+||+
T Consensus       336 dg~v~iw~  343 (369)
T 3zwl_B          336 DGFIRLHH  343 (369)
T ss_dssp             TSEEEEEE
T ss_pred             CCeEEEEE
Confidence            99999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4e-37  Score=358.01  Aligned_cols=342  Identities=25%  Similarity=0.432  Sum_probs=287.5

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeee-ccCCCC----CCCCCCCcceeccCCcc
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDT----DPRDAGGRGMDVSQGFS  501 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~-l~~d~~----~~~d~~~~~~d~~~~~~  501 (792)
                      ...+.|++|+.++++++.+   ++||.. ++....+..      ....+..+ +.++..    ...+..+++|+..    
T Consensus       183 v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~------~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~----  251 (577)
T 2ymu_A          183 VWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG------HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----  251 (577)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEEC------CSSCEEEEEECTTSSCEEEEETTSCEEEECTT----
T ss_pred             eeeeeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEEec------CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC----
Confidence            3467889999998876554   889954 443332221      12223333 333332    2356677788743    


Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      .+.+..+.+|...|.+++|+||+++|++++.|+.|++||. +++.+..+.+|...|++++|+|++.+|++++.|+.|++|
T Consensus       252 ~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w  330 (577)
T 2ymu_A          252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW  330 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Confidence            3567788999999999999999999999999999999996 467788899999999999999999999999999999999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcC
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~d  658 (792)
                      |+..  ..+..+.+|...|.+++|+|++. ++++++.|+.|++||.. ++++..+.   ..+.+++|+|++.++++++.|
T Consensus       331 ~~~~--~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d  406 (577)
T 2ymu_A          331 NRNG--QHLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDD  406 (577)
T ss_dssp             ETTS--CEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             eCCC--CeeEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCC
Confidence            9864  56778889999999999999976 56689999999999964 55565554   457889999999999999999


Q ss_pred             CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003842          659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~  737 (792)
                      +.|++||. +++.+..+.+|...|++++|+|++++|++++.| .|++||+..    ..+..+..|...|.+++|+|++++
T Consensus       407 ~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~----~~~~~~~~~~~~v~~~~~spd~~~  481 (577)
T 2ymu_A          407 KTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQT  481 (577)
T ss_dssp             SEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS----CEEEEEECCSSCEEEEEECTTSCE
T ss_pred             CEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC----CEEEEEcCCCCCEEEEEEcCCCCE
Confidence            99999995 567888899999999999999999999999999 999999742    577888899999999999999999


Q ss_pred             EEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          738 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       738 L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |++++.|+.|+|||........+.+|...|++++|+||+++||+++.||.|+|||
T Consensus       482 las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd  536 (577)
T 2ymu_A          482 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  536 (577)
T ss_dssp             EEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence            9999999999999976555558889999999999999999999999999999997

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5e-37  Score=329.87  Aligned_cols=279  Identities=19%  Similarity=0.285  Sum_probs=249.1

Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---EEec--cCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK---TNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~---~~l~--~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      ...+|...|++++|+|++++|++++ ||.|+|||+.++...   ..+.  .|...|++++|+|++++|++++.||.|++|
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            3448999999999999999999999 999999999876533   3333  789999999999999999999999999999


Q ss_pred             eCCCCCc-eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc
Q 003842          582 DADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       582 dl~s~~~-~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~  657 (792)
                      |+++... ....+..|...|.+++|+|++. ++++++.||.|++||+++++.+..+.   ..+.+++|+|++..+++++.
T Consensus       125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  203 (337)
T 1gxr_A          125 DLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL  203 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ECCCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence            9987432 4567778999999999999876 56689999999999999999888765   45788999999999999999


Q ss_pred             CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003842          658 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP  736 (792)
Q Consensus       658 dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~  736 (792)
                      |+.|++||+++++.+..+. +...+.+++|+|++++|++++.+ .|++||+++..    ...+..|...+.+++|+|+++
T Consensus       204 dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~  278 (337)
T 1gxr_A          204 DNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGK  278 (337)
T ss_dssp             TSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSS
T ss_pred             CCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCC
Confidence            9999999999998888775 77889999999999999999988 99999998752    345677889999999999999


Q ss_pred             EEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          737 SLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       737 ~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +|++++.||.|++||+.+++.+....|...|.+++|++++++|++++.||.|++||
T Consensus       279 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          279 WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             EEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            99999999999999999999887778999999999999999999999999999996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-37  Score=343.57  Aligned_cols=325  Identities=15%  Similarity=0.190  Sum_probs=268.9

Q ss_pred             cceEEEEeCCC-eeeecCCC---eeEeC----CCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcc
Q 003842          430 KPLMMFGTDGA-GTLTSPSN---QLWDD----KDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFS  501 (792)
Q Consensus       430 k~~l~~s~Dg~-~~~ss~s~---~lWD~----~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~  501 (792)
                      ...+.|+|||. ++++++.+   +|||+    .+++..-.+...           ..+.                   ..
T Consensus        48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-----------~~~~-------------------~~   97 (425)
T 1r5m_A           48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTII-----------AELR-------------------HP   97 (425)
T ss_dssp             CSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEE-----------EEEE-------------------CC
T ss_pred             eEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccc-----------cccc-------------------cc
Confidence            45789999999 88876553   88998    666521110000           0000                   00


Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      +.......+|.+.|++++|+|++++|++|+.||.|+||| .+++.+..+..|...|++++|+|++++|++++.||.|++|
T Consensus        98 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  176 (425)
T 1r5m_A           98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILW  176 (425)
T ss_dssp             CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence            001122345788999999999999999999999999999 7788899999999999999999999999999999999999


Q ss_pred             eCCCCCceeEEecccCCC---------------eEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEE
Q 003842          582 DADNPGYSLRTFMGHSAS---------------VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQM  643 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~---------------V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v  643 (792)
                      |+.+ +..+..+..+...               |.+++|++++  .+++++.||.|++||+++++.+..+.   ..+.++
T Consensus       177 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~  253 (425)
T 1r5m_A          177 NVIS-GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVL  253 (425)
T ss_dssp             ETTT-TEEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEE
T ss_pred             ECCC-CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEE
Confidence            9987 6677777777766               9999999874  46689999999999999988777664   467889


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC
Q 003842          644 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN  722 (792)
Q Consensus       644 ~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~  722 (792)
                      +|++++..+++++.|+.|++||+++++.+..+..|...|.+++|+|++ +|++++.| .|++||++++   ..+..+..+
T Consensus       254 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~  329 (425)
T 1r5m_A          254 EFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---TLLALSIVD  329 (425)
T ss_dssp             EEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---EEEEEEECT
T ss_pred             EECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---cEeEecccC
Confidence            999999999999999999999999999999999999999999999999 89999988 9999999876   778888888


Q ss_pred             CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--------------------EE-EEcccCC--CeEEEEEeCCCCEE
Q 003842          723 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--------------------TM-TLTAHEG--LIAALAVSTETGYV  779 (792)
Q Consensus       723 ~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~--------------------~~-~~~~h~~--~V~sl~fspdg~~L  779 (792)
                      ...+.+++|+|++++|++++.||.|++||+.+++                    .+ .+..|..  .|++++|+|++++|
T Consensus       330 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  409 (425)
T 1r5m_A          330 GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKI  409 (425)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEE
T ss_pred             CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceE
Confidence            9999999999999999999999999999998877                    55 6778866  99999999999999


Q ss_pred             EEEeCCCcEEEeC
Q 003842          780 ASASHDKFVKLWK  792 (792)
Q Consensus       780 aSgs~DG~I~IWd  792 (792)
                      ++++.||.|+|||
T Consensus       410 ~~~~~dg~i~iw~  422 (425)
T 1r5m_A          410 SVAYSLQEGSVVA  422 (425)
T ss_dssp             EEEESSSCCEEEE
T ss_pred             EEEecCceEEEEe
Confidence            9999999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.4e-36  Score=327.75  Aligned_cols=286  Identities=21%  Similarity=0.376  Sum_probs=245.1

Q ss_pred             cceeeeeeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc-----eeEEeccCCCCEEEEEECCCCCeEEEEe
Q 003842          500 FSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHSSLITDVRFSPSMPRLATSS  573 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~t~~-----~~~~l~~h~~~V~~i~fspdg~~Lasgs  573 (792)
                      ..+....+|+||.+.|+||+|+|+ +++||+|+.|++|+|||+.+.+     ....+.+|...|++++|+|++++|++++
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~  105 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS  105 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence            344566789999999999999997 6899999999999999987643     4667889999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----eCCeeEEEEecCC
Q 003842          574 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHL  649 (792)
Q Consensus       574 ~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~sp~~  649 (792)
                      .|+.|++|+... .........+...+..+.+++++. +|++++.|+.+++||+.........    ...+..++|+++.
T Consensus       106 ~d~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          106 WDGTLRLWDLTT-GTTTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             TTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred             ccccceEEeecc-cceeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence            999999999987 666677777888999999999876 4569999999999999876654432    2356678887765


Q ss_pred             --CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCce
Q 003842          650 --GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF  726 (792)
Q Consensus       650 --~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i  726 (792)
                        ..+++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++++.| .|++||+++.   ..+..+.. ...+
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~-~~~v  259 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG-GDII  259 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-SSCE
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---ceeeeecC-CceE
Confidence              456788889999999999999999999999999999999999999999999 9999999876   56666654 4579


Q ss_pred             EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----------EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          727 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       727 ~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~----------~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .+++|+|++. +++++.|+.|+|||++++..+          ...+|...|++++|+||+++||+|+.||.|+|||
T Consensus       260 ~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          260 NALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             EEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            9999999876 566778999999999987655          2346889999999999999999999999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-37  Score=348.00  Aligned_cols=273  Identities=22%  Similarity=0.472  Sum_probs=246.6

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|+|++.++++++.+   +|||+.+++.                                              ..
T Consensus       111 V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~----------------------------------------------~~  144 (410)
T 1vyh_C          111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDF----------------------------------------------ER  144 (410)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTTCCC----------------------------------------------CE
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----------------------------------------------EE
Confidence            4568899999998886544   8898876542                                              24


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      .+.+|.+.|++++|++++++|++|+.|++|+|||+.+++++..+.+|...|++++|+|++.+|++|+.|++|++||+.+ 
T Consensus       145 ~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~-  223 (410)
T 1vyh_C          145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-  223 (410)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-
T ss_pred             EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-
Confidence            5778999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecC---------------
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPH---------------  648 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~---------------  648 (792)
                      +.++..+.+|...|.+++|++++. +|++|+.|+.|++||++++++...+..   .+.++.|+|+               
T Consensus       224 ~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  302 (410)
T 1vyh_C          224 GYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK  302 (410)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred             CcEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence            678889999999999999999976 667999999999999999988877654   5778899986               


Q ss_pred             -----CCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC
Q 003842          649 -----LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN  722 (792)
Q Consensus       649 -----~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~  722 (792)
                           +..+++++.|+.|++||++++.++..+.+|...|++++|+|++++|++++.| .|++||+.++   .++..+..|
T Consensus       303 ~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---~~~~~~~~h  379 (410)
T 1vyh_C          303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAH  379 (410)
T ss_dssp             -----CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECC
T ss_pred             ccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCC
Confidence                 5679999999999999999999999999999999999999999999999999 9999999776   677788899


Q ss_pred             CCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003842          723 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       723 ~~~i~si~fspdg~~L~sgs~dg~I~IwDl~  753 (792)
                      ...|++++|+|++.+|++|+.|+.|+||+++
T Consensus       380 ~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          380 EHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             SSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            9999999999999999999999999999863

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-39  Score=355.40  Aligned_cols=280  Identities=19%  Similarity=0.234  Sum_probs=246.4

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----CceeEEeccCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCC
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t----~~~~~~l~~h~~~V~~i~fspd-g~~Lasgs~Dg~V~IWdl~  584 (792)
                      .|...|++++|+|++++|++|+.||.|+|||+.+    .+.+..+.+|...|++++|+|+ +.+|++++.||.|++||+.
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            5788899999999999999999999999999987    4588889999999999999998 8899999999999999998


Q ss_pred             CCC------ce--eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---------CCeeEEEEec
Q 003842          585 NPG------YS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQMRFQP  647 (792)
Q Consensus       585 s~~------~~--i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---------~~~~~v~~sp  647 (792)
                      +..      ..  +..+..|...|.+++|+|++..+|++++.||.|++||+++++.+..+.         ..+.+++|+|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (416)
T 2pm9_A          145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP  224 (416)
T ss_dssp             TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred             CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence            744      22  223467899999999999977788899999999999999999887764         3478899999


Q ss_pred             CC-CEEEEEEcCC---eEEEEECCCC-eEEEEec-CCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 003842          648 HL-GRYLAAAAEN---VVSILDAETQ-ACRLSLQ-GHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHEL  719 (792)
Q Consensus       648 ~~-~~lla~s~dg---~I~i~D~~t~-~~~~~l~-~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~  719 (792)
                      ++ ..+++++.|+   .|++||++++ .++..+. +|...|.+++|+| ++++|++++.| .|++||++++   +++..+
T Consensus       225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---~~~~~~  301 (416)
T 2pm9_A          225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---EQLSQF  301 (416)
T ss_dssp             SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---CEEEEE
T ss_pred             CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---ccceee
Confidence            97 5788888888   9999999986 6777777 8999999999999 99999999998 9999999876   778888


Q ss_pred             ecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEE-EE-----------------------------------cc
Q 003842          720 SCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM-TL-----------------------------------TA  762 (792)
Q Consensus       720 ~~~~~~i~si~fspdg-~~L~sgs~dg~I~IwDl~~~~~~-~~-----------------------------------~~  762 (792)
                      ..|...|.+++|+|++ .+|++++.|+.|+|||+.+.... ..                                   ..
T Consensus       302 ~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (416)
T 2pm9_A          302 PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTW  381 (416)
T ss_dssp             ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCST
T ss_pred             cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcc
Confidence            8999999999999999 89999999999999999876532 00                                   01


Q ss_pred             cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          763 HEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       763 h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |...|.+++|+|||++|++++.||.|+||+
T Consensus       382 ~~~~~~~~~~s~dg~~la~~~~d~~v~~w~  411 (416)
T 2pm9_A          382 YGEPSPAAHWAFGGKLVQITPDGKGVSITN  411 (416)
T ss_dssp             TCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred             ccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence            667888999999999999999999999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4e-37  Score=340.04  Aligned_cols=284  Identities=15%  Similarity=0.199  Sum_probs=252.5

Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------eeEEeccCCCCEEEEEECCC----C---Ce
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPS----M---PR  568 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~------~~~~l~~h~~~V~~i~fspd----g---~~  568 (792)
                      ......+.+|.+.|+||+|+|  ++|++|+.||.|+|||+.+++      .+..+.+|...|++++|+++    +   .+
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            345677889999999999999  799999999999999999988      78889999999999999999    9   99


Q ss_pred             EEEEeCCCcEEEEeCCCCCce-----eEEeccc-----CCCeEEEEEc----CCCCeEEEEEeCCCcEEEEEcCC-----
Q 003842          569 LATSSFDKTVRVWDADNPGYS-----LRTFMGH-----SASVMSLDFH----PNKDDLICSCDGDGEIRYWSINN-----  629 (792)
Q Consensus       569 Lasgs~Dg~V~IWdl~s~~~~-----i~~~~~h-----~~~V~sl~fs----pd~~~ll~sgs~Dg~I~iwdl~~-----  629 (792)
                      |++++.||.|++||+.+ ...     +..+..|     ...|.+++|+    |++..+|++++.||.|++||+++     
T Consensus        84 l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  162 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITR-EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  162 (397)
T ss_dssp             EEEEETTSCEEEEEEEE-CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEEEcCCCCEEEEEccC-CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence            99999999999999987 444     7778888     5999999999    98875377999999999999998     


Q ss_pred             -CeeEE-----Ee----------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC---C---CCCeEEEEE
Q 003842          630 -GSCTR-----VF----------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG---H---TKPIDSVCW  687 (792)
Q Consensus       630 -~~~~~-----~~----------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~---h---~~~V~sv~~  687 (792)
                       ++.+.     .+          ...+.+++|++++ .+++++.|+.|++||+++++.+..+..   |   ...|.+++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~  241 (397)
T 1sq9_A          163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  241 (397)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence             55554     44          4567889999999 999999999999999999999999998   8   999999999


Q ss_pred             cCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeec-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003842          688 DPSGELLASVSED----SVRVWTVGSGSEGECVHELSC-------------NGNKFHSCVFHPTYPSLLVIGCYQSLELW  750 (792)
Q Consensus       688 spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~-------------~~~~i~si~fspdg~~L~sgs~dg~I~Iw  750 (792)
                      +|++++|++++.|    .|++||++++   ..+..+..             |...|.+++|+|++++|++++.|+.|+||
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  318 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW  318 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            9999999998875    8999999876   67777777             88999999999999999999999999999


Q ss_pred             ECCCCcEE-EEc------cc---------------CCCeEEEEEeCCC----------CEEEEEeCCCcEEEeC
Q 003842          751 NMSENKTM-TLT------AH---------------EGLIAALAVSTET----------GYVASASHDKFVKLWK  792 (792)
Q Consensus       751 Dl~~~~~~-~~~------~h---------------~~~V~sl~fspdg----------~~LaSgs~DG~I~IWd  792 (792)
                      |+.+++.+ .+.      .|               ...|++++|+|++          ++|++++.||.|+|||
T Consensus       319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence            99999877 566      67               8999999999998          7999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.8e-36  Score=325.09  Aligned_cols=276  Identities=20%  Similarity=0.358  Sum_probs=240.2

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|+|||.++++++.+   +|||+.+++                                              .+.
T Consensus        16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~----------------------------------------------~~~   49 (304)
T 2ynn_A           16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQV----------------------------------------------EVR   49 (304)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTE----------------------------------------------EEE
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCCc----------------------------------------------eeE
Confidence            4468999999998886544   788876643                                              334


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      .+..|...|.+++|++++++|++|+.|+.|+|||+.+++.+..+.+|...|++++|+|++.+|++|+.|++|+|||+++.
T Consensus        50 ~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~  129 (304)
T 2ynn_A           50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN  129 (304)
T ss_dssp             EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT
T ss_pred             EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999985


Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEec--CCCEEEEEEcCCe
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQP--HLGRYLAAAAENV  660 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp--~~~~lla~s~dg~  660 (792)
                      ......+.+|...|.+++|+|++..+|++|+.|++|++||++.......+.    ..+..+.|.+  ++.++++++.|+.
T Consensus       130 ~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~  209 (304)
T 2ynn_A          130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT  209 (304)
T ss_dssp             TEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE
T ss_pred             cchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe
Confidence            567778899999999999999766788899999999999998877655543    3456677876  6678999999999


Q ss_pred             EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-EE
Q 003842          661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SL  738 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-~L  738 (792)
                      |++||+++++++..+.+|...|.+++|+|++.+|++++.| .|++||+.++   +++..+..+...+.+++|+|++. .+
T Consensus       210 i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (304)
T 2ynn_A          210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNY  286 (304)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---CEEEEECCSSSSEEEEEECTTCGGGC
T ss_pred             EEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC---ceeeeccCCCccEEEEEECCCCCceE
Confidence            9999999999999999999999999999999999999999 9999999876   77888888889999999999885 23


Q ss_pred             EEEEcCCeEEEEECCC
Q 003842          739 LVIGCYQSLELWNMSE  754 (792)
Q Consensus       739 ~sgs~dg~I~IwDl~~  754 (792)
                      ++++.++.+.+|++.+
T Consensus       287 ~asg~~~g~~~~~~~~  302 (304)
T 2ynn_A          287 IASGFDNGFTVLSLGN  302 (304)
T ss_dssp             EEEEETTEEEEEECC-
T ss_pred             EEEecCCceEEEEecc
Confidence            4445566788888765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8e-37  Score=340.65  Aligned_cols=309  Identities=17%  Similarity=0.235  Sum_probs=259.0

Q ss_pred             eEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeeee
Q 003842          432 LMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV  508 (792)
Q Consensus       432 ~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~l  508 (792)
                      .+.|+|||.++++++.+   ++||+.+++....                                              +
T Consensus        61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~----------------------------------------------~   94 (420)
T 3vl1_A           61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM----------------------------------------------L   94 (420)
T ss_dssp             TCEEEEEETTEEEEEETTEEEEEECCSEETTTT----------------------------------------------S
T ss_pred             ceeeeecCCeEEEEEcCCcEEEEEecccceeeE----------------------------------------------E
Confidence            46899999998886544   8899877654311                                              1


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc
Q 003842          509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY  588 (792)
Q Consensus       509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~  588 (792)
                      ..| ..+.+.+|++++++||+|+.||.|+|||+.+++....+.+|...|++++|+|++++|++|+.|+.|++||+++ +.
T Consensus        95 ~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~  172 (420)
T 3vl1_A           95 KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-GS  172 (420)
T ss_dssp             CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CC
T ss_pred             ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC-Cc
Confidence            122 3355567899999999999999999999999999988899999999999999999999999999999999997 66


Q ss_pred             eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---------------------------Cee
Q 003842          589 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---------------------------GTA  641 (792)
Q Consensus       589 ~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---------------------------~~~  641 (792)
                      .+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++++..+..                           .+.
T Consensus       173 ~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~  251 (420)
T 3vl1_A          173 NPRTLIGHRATVTDIAIIDRGR-NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKN  251 (420)
T ss_dssp             CCEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred             CceEEcCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCccc
Confidence            7788899999999999999976 556999999999999999998887752                           233


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-CCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEE
Q 003842          642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHE  718 (792)
Q Consensus       642 ~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~-~h~~~V~sv~~spdg~-~Las~s~d-~I~IwDl~s~~~~~~i~~  718 (792)
                      .++|+|++..+++++.||.|++||+++++.+..+. .|...|.+++|+|++. +|++++.| .|++||++++..  .+..
T Consensus       252 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--~~~~  329 (420)
T 3vl1_A          252 NLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--PVGE  329 (420)
T ss_dssp             TTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEE
T ss_pred             ceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--chhh
Confidence            35567888899999999999999999998777765 4888999999999999 99999998 999999987632  3455


Q ss_pred             eec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC----------cEEEEcccCCCeEEEEEeCCCC---EEEEEeC
Q 003842          719 LSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN----------KTMTLTAHEGLIAALAVSTETG---YVASASH  784 (792)
Q Consensus       719 ~~~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~----------~~~~~~~h~~~V~sl~fspdg~---~LaSgs~  784 (792)
                      +.. +...+.++. .+++.+|++++.|+.|++||+...          ....+..|.+.|.+++|+|++.   .|++++.
T Consensus       330 ~~~~~~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~  408 (420)
T 3vl1_A          330 FLINEGTPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK  408 (420)
T ss_dssp             EEESTTSCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET
T ss_pred             hhccCCCCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcC
Confidence            555 556677774 557889999999999999998762          2335678899999999999999   7888889


Q ss_pred             CCcEEEeC
Q 003842          785 DKFVKLWK  792 (792)
Q Consensus       785 DG~I~IWd  792 (792)
                      +|.+.+|+
T Consensus       409 ~g~~~~~~  416 (420)
T 3vl1_A          409 NNFCALYN  416 (420)
T ss_dssp             TTEEEEEE
T ss_pred             CceEEEEe
Confidence            99999995

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.6e-36  Score=327.11  Aligned_cols=244  Identities=20%  Similarity=0.345  Sum_probs=228.7

Q ss_pred             eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      ...+.+|...|.+++|++++.++++++.|++|+|||+.+++.+..+..|...+.+++|+|++++|++++.||.|++||++
T Consensus        73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~  152 (321)
T 3ow8_A           73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE  152 (321)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT
T ss_pred             eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeE
Q 003842          585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVV  661 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I  661 (792)
                      + +.....+..|...|.+++|+|+++ +|++|+.||.|++||+++++++..+.+   .+.+++|+|++..|++++.|+.|
T Consensus       153 ~-~~~~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i  230 (321)
T 3ow8_A          153 S-GKKEYSLDTRGKFILSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI  230 (321)
T ss_dssp             T-CSEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCE
T ss_pred             C-CceeEEecCCCceEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeE
Confidence            7 666777888999999999999976 566999999999999999999888764   57889999999999999999999


Q ss_pred             EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003842          662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV  740 (792)
Q Consensus       662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s  740 (792)
                      ++||+++++.+..+.+|...|.+++|+|++.+|++++.| .|+|||++++   .++..+..|...|.+++|+|++.+|++
T Consensus       231 ~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~g~~l~s  307 (321)
T 3ow8_A          231 KIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR---TCVHTFFDHQDQVWGVKYNGNGSKIVS  307 (321)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---EEEEEEcCCCCcEEEEEECCCCCEEEE
Confidence            999999999999999999999999999999999999999 9999999876   788899999999999999999999999


Q ss_pred             EEcCCeEEEEECC
Q 003842          741 IGCYQSLELWNMS  753 (792)
Q Consensus       741 gs~dg~I~IwDl~  753 (792)
                      ++.|+.|+|||+.
T Consensus       308 ~~~d~~i~vwd~p  320 (321)
T 3ow8_A          308 VGDDQEIHIYDCP  320 (321)
T ss_dssp             EETTCCEEEEECC
T ss_pred             EeCCCeEEEEeCC
Confidence            9999999999974

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.5e-36  Score=358.30  Aligned_cols=284  Identities=23%  Similarity=0.410  Sum_probs=244.3

Q ss_pred             eeeeeeeecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-----ceeEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 003842          502 FKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSLITDVRFSPSMPRLATSSFD  575 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t~-----~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D  575 (792)
                      +.....+++|.+.|+||+|++++ ++|++|+.|++|+|||+.+.     .....+.+|...|++++|+|++++|++|+.|
T Consensus       372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D  451 (694)
T 3dm0_A          372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD  451 (694)
T ss_dssp             SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            34556789999999999999865 79999999999999999753     3456788999999999999999999999999


Q ss_pred             CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe------eCCeeEEEEecCC
Q 003842          576 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KGGTAQMRFQPHL  649 (792)
Q Consensus       576 g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~------~~~~~~v~~sp~~  649 (792)
                      |+|+|||+.+ +..+..+.+|...|.+++|+|++.. |++|+.|++|++||+.........      ...+.+++|+|++
T Consensus       452 g~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  529 (694)
T 3dm0_A          452 GELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT  529 (694)
T ss_dssp             SEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred             CcEEEEECCC-CcceeEEeCCCCCEEEEEEeCCCCE-EEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence            9999999987 6778889999999999999999765 559999999999998765444332      2347889999986


Q ss_pred             --CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCce
Q 003842          650 --GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF  726 (792)
Q Consensus       650 --~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i  726 (792)
                        ..+++++.|+.|++||+++.+++..+.+|...|++++|+|++++|++++.| .|+|||++++   +++..+.. ...+
T Consensus       530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~v  605 (694)
T 3dm0_A          530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSVI  605 (694)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSCE
T ss_pred             CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEecC-CCcE
Confidence              578999999999999999999999999999999999999999999999999 9999999876   55655543 4679


Q ss_pred             EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-Eccc-------------------CCCeEEEEEeCCCCEEEEEeCCC
Q 003842          727 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-LTAH-------------------EGLIAALAVSTETGYVASASHDK  786 (792)
Q Consensus       727 ~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-~~~h-------------------~~~V~sl~fspdg~~LaSgs~DG  786 (792)
                      .+++|+|++.+|++++ ++.|+|||+.++..+. +..+                   ...|++++|+||+++|++|+.||
T Consensus       606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg  684 (694)
T 3dm0_A          606 HALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG  684 (694)
T ss_dssp             EEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence            9999999998776654 5679999999988762 2211                   12478999999999999999999


Q ss_pred             cEEEeC
Q 003842          787 FVKLWK  792 (792)
Q Consensus       787 ~I~IWd  792 (792)
                      .|+||+
T Consensus       685 ~i~iW~  690 (694)
T 3dm0_A          685 VIRVWG  690 (694)
T ss_dssp             EEEEEE
T ss_pred             eEEEEe
Confidence            999996

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.1e-36  Score=329.20  Aligned_cols=280  Identities=15%  Similarity=0.221  Sum_probs=245.3

Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      +..|.+.|++++|+|++++||+|+.|+.|+|||+.+++  .+..+.+|...|++++|+|++++|++++.||.|++||+++
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            45699999999999999999999999999999999987  8889999999999999999999999999999999999987


Q ss_pred             CCc-eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee---EEEe----eCCeeEEEEecCCCEEEEEEc
Q 003842          586 PGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVF----KGGTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       586 ~~~-~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~---~~~~----~~~~~~v~~sp~~~~lla~s~  657 (792)
                      ... ....+..|...|.+++|+|++. +|++++.|+.|++||++.+..   ...+    ...+.+++|+|++..+++++.
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            321 2334467999999999999975 566899999999999998762   2222    356788999999999999999


Q ss_pred             CCeEEEEEC------------------CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE
Q 003842          658 ENVVSILDA------------------ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE  718 (792)
Q Consensus       658 dg~I~i~D~------------------~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~  718 (792)
                      |+.|++||+                  ..++.+..+..|...|.+++|+|++++|++++.| .|++||++++   .++..
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~  239 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVAT  239 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEE
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceeEE
Confidence            999999995                  4678899999999999999999999999999999 9999999876   67888


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--CcE---------------------------------------
Q 003842          719 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE--NKT---------------------------------------  757 (792)
Q Consensus       719 ~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~--~~~---------------------------------------  757 (792)
                      +..+...+.+++|+|++.+|+++ .|+.|++||+.+  +..                                       
T Consensus       240 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (372)
T 1k8k_C          240 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG  318 (372)
T ss_dssp             EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred             EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence            88899999999999999977777 999999999987  421                                       


Q ss_pred             EEE-cccCCCeEEEEEe-CCC---CEEEEEeCCCcEEEeC
Q 003842          758 MTL-TAHEGLIAALAVS-TET---GYVASASHDKFVKLWK  792 (792)
Q Consensus       758 ~~~-~~h~~~V~sl~fs-pdg---~~LaSgs~DG~I~IWd  792 (792)
                      ..+ .+|...|++++|. +++   .+|++|+.||.|+|||
T Consensus       319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~  358 (372)
T 1k8k_C          319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  358 (372)
T ss_dssp             CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence            122 4899999999976 676   8999999999999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.7e-35  Score=343.98  Aligned_cols=351  Identities=13%  Similarity=0.178  Sum_probs=268.4

Q ss_pred             CcceEEEEeCCCeeeecCCC--eeEeCCCc----chhhcccccccCCCCCCc-eeee-ccC--CCC----CCCCCCCcce
Q 003842          429 SKPLMMFGTDGAGTLTSPSN--QLWDDKDL----ELRADMDRLVEDGSLDDN-VESF-LSH--DDT----DPRDAGGRGM  494 (792)
Q Consensus       429 ~k~~l~~s~Dg~~~~ss~s~--~lWD~~tg----~~~~~~~~~~~~g~~d~~-v~~~-l~~--d~~----~~~d~~~~~~  494 (792)
                      ....+.|+|||.++++++..  .|||+.++    +....+..      .... +.+. +.+  ++.    ...|+.+++|
T Consensus        20 ~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~------h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw   93 (615)
T 1pgu_A           20 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG------HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW   93 (615)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECT------TTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEec------CCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence            34468999999988875544  88999987    54433321      1122 3332 333  321    2345667777


Q ss_pred             eccCCc-----ceee--------------------------------------------eeeeecCCCCeEEEEEcCCCC
Q 003842          495 DVSQGF-----SFKE--------------------------------------------ANSVRASTSKVICCHFSSDGK  525 (792)
Q Consensus       495 d~~~~~-----~~~~--------------------------------------------~~~l~~H~~~V~~lafspdg~  525 (792)
                      ++..+.     ..+.                                            +..+.+|...|.+++|+|+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~  173 (615)
T 1pgu_A           94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP  173 (615)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSS
T ss_pred             eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCC
Confidence            774320     1122                                            233445666666666666665


Q ss_pred             -EEEEEeCCCeEEEEECCCCceeEEeccCCC---CEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCceeEEe-c---cc
Q 003842          526 -LLATGGHDKKAVLWHTDTLKSKTNLEEHSS---LITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTF-M---GH  596 (792)
Q Consensus       526 -~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~---~V~~i~fspd-g~~Lasgs~Dg~V~IWdl~s~~~~i~~~-~---~h  596 (792)
                       +|++++.|+.|++||+.+++.+..+..|..   .|++++|+|+ +++|++++.||.|++||+.+ +..+..+ .   .|
T Consensus       174 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~  252 (615)
T 1pgu_A          174 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPV  252 (615)
T ss_dssp             CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCC
T ss_pred             cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCEeEEeccccccc
Confidence             788888899999999999999999999999   9999999999 99999999999999999987 6677777 5   89


Q ss_pred             CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC-------eeEEEEe-----------------------
Q 003842          597 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------TAQMRFQ-----------------------  646 (792)
Q Consensus       597 ~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-------~~~v~~s-----------------------  646 (792)
                      ...|.+++|+ ++. +|++++.|+.|++||+++++++..+...       +..+.|.                       
T Consensus       253 ~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~  330 (615)
T 1pgu_A          253 QGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE  330 (615)
T ss_dssp             CSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEE
T ss_pred             CCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCc
Confidence            9999999999 654 6679999999999999987766544322       0111110                       


Q ss_pred             --------------------------------------------------cC----------------------------
Q 003842          647 --------------------------------------------------PH----------------------------  648 (792)
Q Consensus       647 --------------------------------------------------p~----------------------------  648 (792)
                                                                        ++                            
T Consensus       331 ~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  410 (615)
T 1pgu_A          331 VLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPK  410 (615)
T ss_dssp             EEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEE
T ss_pred             EEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCce
Confidence                                                              00                            


Q ss_pred             ---------------------------------------------CCEEEEEEc-CCeEEEEECCCCeEE-EEecCCCCC
Q 003842          649 ---------------------------------------------LGRYLAAAA-ENVVSILDAETQACR-LSLQGHTKP  681 (792)
Q Consensus       649 ---------------------------------------------~~~lla~s~-dg~I~i~D~~t~~~~-~~l~~h~~~  681 (792)
                                                                   +..+++++. |+.|++||+.+++.. ..+..|...
T Consensus       411 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~  490 (615)
T 1pgu_A          411 VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK  490 (615)
T ss_dssp             EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSC
T ss_pred             EEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCc
Confidence                                                         233444444 666666666665444 556678999


Q ss_pred             eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec-CCCceEEEEEeC----------CCCEEEEEEcCCeEEE
Q 003842          682 IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHP----------TYPSLLVIGCYQSLEL  749 (792)
Q Consensus       682 V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~-~~~~i~si~fsp----------dg~~L~sgs~dg~I~I  749 (792)
                      |++++|+|++++|++++.| .|++||+.++   +.+..+.. |...|.+++|+|          ++++|++++.|+.|++
T Consensus       491 v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~i  567 (615)
T 1pgu_A          491 PSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI  567 (615)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred             eEEEEECCCCCEEEEcCCCCeEEEeeCCCC---cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEE
Confidence            9999999999999999998 9999999876   67777777 899999999999          9999999999999999


Q ss_pred             EECCCC-cEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          750 WNMSEN-KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       750 wDl~~~-~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ||+.++ +.+ .+.+|...|++++|+|++. |++++.||.|+|||
T Consensus       568 w~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~  611 (615)
T 1pgu_A          568 YSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN  611 (615)
T ss_dssp             EESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             EECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence            999987 444 6778999999999999999 99999999999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2e-36  Score=329.06  Aligned_cols=290  Identities=17%  Similarity=0.307  Sum_probs=247.8

Q ss_pred             cceeeeeee-ecCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEECCCCceeEEecc-----CCCCEEEEEECCC----
Q 003842          500 FSFKEANSV-RASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKSKTNLEE-----HSSLITDVRFSPS----  565 (792)
Q Consensus       500 ~~~~~~~~l-~~H~~~V~~lafspd----g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-----h~~~V~~i~fspd----  565 (792)
                      +.|+....+ .+|.+.|++++|+|+    ..++++++.++.|+|||+.+++.+..+..     |...|++++|+|+    
T Consensus         5 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   84 (366)
T 3k26_A            5 YSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTS   84 (366)
T ss_dssp             CCCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTC
T ss_pred             eEEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCC
Confidence            344444444 489999999999984    45677777788999999998887777664     5678999999998    


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe------eCC
Q 003842          566 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KGG  639 (792)
Q Consensus       566 g~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~------~~~  639 (792)
                      +.+|++|+.||.|+|||+.+ +..+..+.+|...|.+++|+|++..+|++++.||.|++||+++++.+..+      ...
T Consensus        85 ~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  163 (366)
T 3k26_A           85 HPLLAVAGSRGIIRIINPIT-MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE  163 (366)
T ss_dssp             CEEEEEEETTCEEEEECTTT-CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred             CCEEEEecCCCEEEEEEchh-ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence            66999999999999999997 67788888999999999999944567779999999999999999988776      246


Q ss_pred             eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe----------------------------cCCCCCeEEEEEcCCC
Q 003842          640 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL----------------------------QGHTKPIDSVCWDPSG  691 (792)
Q Consensus       640 ~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l----------------------------~~h~~~V~sv~~spdg  691 (792)
                      +.+++|+|++..+++++.|+.|++||+++++.+..+                            ..|...|.+++|+  +
T Consensus       164 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~  241 (366)
T 3k26_A          164 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G  241 (366)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred             eeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence            788999999999999999999999999987544333                            3399999999998  7


Q ss_pred             CEEEEEeCC-eEEEEECCCCCC-----------cceEEEeecCCCceEEEEEeCC--CCEEEEEEcCCeEEEEECCCCcE
Q 003842          692 ELLASVSED-SVRVWTVGSGSE-----------GECVHELSCNGNKFHSCVFHPT--YPSLLVIGCYQSLELWNMSENKT  757 (792)
Q Consensus       692 ~~Las~s~d-~I~IwDl~s~~~-----------~~~i~~~~~~~~~i~si~fspd--g~~L~sgs~dg~I~IwDl~~~~~  757 (792)
                      ++|++++.| .|++||+.+...           ...+..+..|...|.+++|+|+  +.+|++++.||.|++||+.+++.
T Consensus       242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~  321 (366)
T 3k26_A          242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP  321 (366)
T ss_dssp             TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred             CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence            799999988 999999987532           2447778888899999999999  99999999999999999998742


Q ss_pred             -----EEEccc--CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          758 -----MTLTAH--EGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       758 -----~~~~~h--~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                           ..+..|  ...|++++|+|++++|++++.||.|+|||
T Consensus       322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  363 (366)
T 3k26_A          322 HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD  363 (366)
T ss_dssp             GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence                 256666  79999999999999999999999999996

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-35  Score=311.88  Aligned_cols=278  Identities=15%  Similarity=0.251  Sum_probs=246.2

Q ss_pred             ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003842          501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV  580 (792)
Q Consensus       501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I  580 (792)
                      .++....+.+|.+.|+|++| +++++|++|+.||.|+|||+.+++....+..|...|.+++|+|++++|++++.||.|++
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            45678899999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCC--ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEec-CCCEEEE
Q 003842          581 WDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQP-HLGRYLA  654 (792)
Q Consensus       581 Wdl~s~~--~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp-~~~~lla  654 (792)
                      |++....  ..+..+.+|...|.+++|.  + .++++++.||.|++||  .++.+..+.   ..+..+.|.+ ++..+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence            9998633  5577788999999999994  3 3677999999999999  555555554   4567788888 8899999


Q ss_pred             EEcCCeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe
Q 003842          655 AAAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH  732 (792)
Q Consensus       655 ~s~dg~I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fs  732 (792)
                      ++.|+.|++||  ..+.+..+.. |...|.+++|++++. |++++.| .|++||++++   +.+..+..|...+.+++|+
T Consensus       161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~  234 (313)
T 3odt_A          161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTYEGHESFVYCIKLL  234 (313)
T ss_dssp             EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEC
T ss_pred             EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhhhcCCceEEEEEEe
Confidence            99999999999  5566677776 899999999999998 7778877 9999999876   6788888899999999999


Q ss_pred             CCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          733 PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       733 pdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+++++ |++++.||.|+|||
T Consensus       235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~  293 (313)
T 3odt_A          235 PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS  293 (313)
T ss_dssp             TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred             cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence            999 5999999999999999999877 6778999999999999998 56789999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.3e-36  Score=331.31  Aligned_cols=244  Identities=17%  Similarity=0.286  Sum_probs=206.7

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE----EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT----NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~----~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      ....+|...|++++|+|+++ +++++.||+|+|||+.+++...    ...+|...|++|+|+|++++|++|+.|+.|+||
T Consensus        88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw  166 (357)
T 4g56_B           88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW  166 (357)
T ss_dssp             SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            34567889999999999985 5567789999999998876543    345799999999999999999999999999999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----CCeeEEEEecCCC-EEEEE
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLG-RYLAA  655 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~~~~~v~~sp~~~-~lla~  655 (792)
                      |+++ +..+..+.+|...|++++|++++..++++++.||.|++||+++++....+.     ..+.+++|+|+++ .++++
T Consensus       167 d~~~-~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g  245 (357)
T 4g56_B          167 DLSQ-KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG  245 (357)
T ss_dssp             ETTT-TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEE
T ss_pred             ECCC-CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEe
Confidence            9997 778889999999999999999988888899999999999999988765543     3467899999865 56678


Q ss_pred             EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC
Q 003842          656 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP  733 (792)
Q Consensus       656 s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp  733 (792)
                      +.|+.|++||+++++++..+.+|...|++++|+|++ ++|++++.| +|+|||++++   +++.. ..|...|++++|+|
T Consensus       246 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---~~~~~-~~H~~~V~~vafsP  321 (357)
T 4g56_B          246 DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---EVFRD-LSHRDFVTGVAWSP  321 (357)
T ss_dssp             ESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---EEEEE-CCCSSCEEEEEECS
T ss_pred             ecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---cEeEE-CCCCCCEEEEEEeC
Confidence            889999999999999999999999999999999987 589999998 9999999876   44444 47899999999998


Q ss_pred             -CCCEEEEEEcCCeEEEEECCCC
Q 003842          734 -TYPSLLVIGCYQSLELWNMSEN  755 (792)
Q Consensus       734 -dg~~L~sgs~dg~I~IwDl~~~  755 (792)
                       ++.+|++++.|+.|++||+...
T Consensus       322 ~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          322 LDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             SSTTEEEEEETTSCEEEEECC--
T ss_pred             CCCCEEEEEcCCCeEEEEECCCC
Confidence             7999999999999999999754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-35  Score=328.70  Aligned_cols=281  Identities=17%  Similarity=0.277  Sum_probs=247.3

Q ss_pred             eeeeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEC----CCCc------eeEEecc----------CCCCEEEEEE
Q 003842          504 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHT----DTLK------SKTNLEE----------HSSLITDVRF  562 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl----~t~~------~~~~l~~----------h~~~V~~i~f  562 (792)
                      .......|.+.|+|++|+|+|+ +||+|+.||.|+|||+    .+++      ....+..          |...|++++|
T Consensus        37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (425)
T 1r5m_A           37 KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW  116 (425)
T ss_dssp             EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE
T ss_pred             hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE
Confidence            3344556779999999999999 9999999999999999    8887      4555554          6889999999


Q ss_pred             CCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---
Q 003842          563 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---  639 (792)
Q Consensus       563 spdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---  639 (792)
                      +|++++|++++.||.|+|||..  +..+..+..|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+...   
T Consensus       117 s~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  193 (425)
T 1r5m_A          117 SHDGNSIVTGVENGELRLWNKT--GALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETG  193 (425)
T ss_dssp             CTTSSEEEEEETTSCEEEEETT--SCEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred             cCCCCEEEEEeCCCeEEEEeCC--CCeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccC
Confidence            9999999999999999999943  677888999999999999999976 5558899999999999999988776532   


Q ss_pred             ---------------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEE
Q 003842          640 ---------------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVR  703 (792)
Q Consensus       640 ---------------~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~  703 (792)
                                     +.++.|+++ +.+++++.++.|++||+++++.+..+..|...|.+++|+|++++|++++.| .|+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  272 (425)
T 1r5m_A          194 GSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR  272 (425)
T ss_dssp             ------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             ccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence                           667888887 678999999999999999999999999999999999999999999999988 999


Q ss_pred             EEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 003842          704 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA  782 (792)
Q Consensus       704 IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSg  782 (792)
                      +||++++   ..+..+..+...+.+++|+|++ +|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++++|+++
T Consensus       273 i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  348 (425)
T 1r5m_A          273 IWHGGNG---NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA  348 (425)
T ss_dssp             EECSSSB---SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEE
T ss_pred             EEECCCC---ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEE
Confidence            9999876   5666777888999999999999 9999999999999999998877 667899999999999999999999


Q ss_pred             eCCCcEEEeC
Q 003842          783 SHDKFVKLWK  792 (792)
Q Consensus       783 s~DG~I~IWd  792 (792)
                      +.||.|+|||
T Consensus       349 ~~dg~i~i~~  358 (425)
T 1r5m_A          349 FMDGQVNVYD  358 (425)
T ss_dssp             ETTSCEEEEE
T ss_pred             ECCCeEEEEE
Confidence            9999999996

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8e-36  Score=323.59  Aligned_cols=285  Identities=16%  Similarity=0.203  Sum_probs=240.3

Q ss_pred             eeeecCCCCeEEEEEcCCCCEE-EEEeC---CCeEEEEECCCCceeEEec-cCCCCEEEEEECCC---CCeEEEEeCCCc
Q 003842          506 NSVRASTSKVICCHFSSDGKLL-ATGGH---DKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPS---MPRLATSSFDKT  577 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~L-asgs~---Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspd---g~~Lasgs~Dg~  577 (792)
                      ..+++|.+.|++++|+|++..| ++|+.   ||.|+|||+.+++...... +|...|++++|+|+   +.+|++++.||.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            4567899999999999999655 55655   8999999999988765543 79999999999998   699999999999


Q ss_pred             EEEEeCCCCCceeEEecccCCCeEEEEE------cCCCCeEEEEEeCCCcEEEEEcCCCe-eEEEeeC-------CeeEE
Q 003842          578 VRVWDADNPGYSLRTFMGHSASVMSLDF------HPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKG-------GTAQM  643 (792)
Q Consensus       578 V~IWdl~s~~~~i~~~~~h~~~V~sl~f------spd~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~-------~~~~v  643 (792)
                      |++||+.+....+..+.+|...|.+++|      ++++. +|++++.||.|++||+++++ .+..+..       .+.++
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  170 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV  170 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence            9999999855488899999999999965      56655 66799999999999999886 5565532       45566


Q ss_pred             E----EecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcC---CCCEEEEEeCC-eEEEEECCCCCCcce
Q 003842          644 R----FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP---SGELLASVSED-SVRVWTVGSGSEGEC  715 (792)
Q Consensus       644 ~----~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp---dg~~Las~s~d-~I~IwDl~s~~~~~~  715 (792)
                      .    |++++..+++++.|+.|++||+++++.+.. ..|...|.+++|+|   ++.+|++++.| .|++||++++.....
T Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  249 (357)
T 3i2n_A          171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG  249 (357)
T ss_dssp             EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred             EEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence            6    678999999999999999999999987554 55889999999999   99999999988 999999987644333


Q ss_pred             EE--EeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCc--------------------EEEEcccCCCeEEEEE
Q 003842          716 VH--ELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENK--------------------TMTLTAHEGLIAALAV  772 (792)
Q Consensus       716 i~--~~~~~~~~i~si~fspdg~-~L~sgs~dg~I~IwDl~~~~--------------------~~~~~~h~~~V~sl~f  772 (792)
                      +.  .+..|...|.+++|+|++. +|++++.||.|++||+..+.                    ...+..|...|++++|
T Consensus       250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~  329 (357)
T 3i2n_A          250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW  329 (357)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred             eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence            32  4458899999999999998 89999999999999997532                    2367789999999999


Q ss_pred             eCCCCEEE-EEeCCCcEEEeC
Q 003842          773 STETGYVA-SASHDKFVKLWK  792 (792)
Q Consensus       773 spdg~~La-Sgs~DG~I~IWd  792 (792)
                      +|++++|+ +++.||.|+|||
T Consensus       330 s~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          330 SPDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             CSSSTTEEEEEETTSEEEEEE
T ss_pred             cCCCCeEEEEecCCCcEEEEE
Confidence            99999998 899999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.9e-35  Score=319.93  Aligned_cols=270  Identities=23%  Similarity=0.427  Sum_probs=238.0

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|++|+.++++++.+   +|||+.+++                                              .+.
T Consensus        58 v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~----------------------------------------------~~~   91 (340)
T 1got_B           58 IYAMHWGTDSRLLLSASQDGKLIIWDSYTTN----------------------------------------------KVH   91 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTCC----------------------------------------------EEE
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEECCCCC----------------------------------------------cce
Confidence            4468899999998886554   788876543                                              234


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~----~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      .+..|...|.+++|+|++++|++|+.|+.|++||+.+.    .....+.+|...|.++.|++++ .|++++.|+.|++||
T Consensus        92 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd  170 (340)
T 1got_B           92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWD  170 (340)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEE
Confidence            56678889999999999999999999999999999875    3556788999999999999876 599999999999999


Q ss_pred             CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCC
Q 003842          583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN  659 (792)
Q Consensus       583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg  659 (792)
                      +.+ +..+..+.+|...|.+++|+|++. +|++|+.|+.|++||++++.++..+.+   .+.+++|+|++..+++++.|+
T Consensus       171 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~  248 (340)
T 1got_B          171 IET-GQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA  248 (340)
T ss_dssp             TTT-TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCC-CcEEEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC
Confidence            987 678889999999999999999875 677999999999999999998887754   578899999999999999999


Q ss_pred             eEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003842          660 VVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP  736 (792)
Q Consensus       660 ~I~i~D~~t~~~~~~l~~--h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~  736 (792)
                      .|++||+++++.+..+..  +...|.+++|+|++++|++++.| .|++||+.++   ..+..+.+|...|.+++|+|++.
T Consensus       249 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~s~dg~  325 (340)
T 1got_B          249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSS
T ss_pred             cEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---cEeeEeecCCCcEEEEEEcCCCC
Confidence            999999999988777653  33579999999999999999999 9999999776   67788889999999999999999


Q ss_pred             EEEEEEcCCeEEEEE
Q 003842          737 SLLVIGCYQSLELWN  751 (792)
Q Consensus       737 ~L~sgs~dg~I~IwD  751 (792)
                      +|++++.|+.|+|||
T Consensus       326 ~l~s~s~D~~i~iWd  340 (340)
T 1got_B          326 AVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEETTSCEEEEC
T ss_pred             EEEEEcCCccEEecC
Confidence            999999999999997

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.3e-35  Score=325.55  Aligned_cols=284  Identities=14%  Similarity=0.252  Sum_probs=236.5

Q ss_pred             ceeeeeeeecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEec--cCCCCEEEEEECC-CCCeEEEEeCCC
Q 003842          501 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSP-SMPRLATSSFDK  576 (792)
Q Consensus       501 ~~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t~~~~~~l~--~h~~~V~~i~fsp-dg~~Lasgs~Dg  576 (792)
                      .++....+.+|.+.|+|++|+|++ ++||+|+.||.|+|||+.+++....+.  +|...|.+++|+| ++.+|++++.|+
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            456777889999999999999999 999999999999999999888887776  6999999999999 778999999999


Q ss_pred             cEEEEeCCCCCceeEEecc---cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCC
Q 003842          577 TVRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLG  650 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~~~~~---h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~  650 (792)
                      .|++||+.+  ..+..+..   |...|.+++|+|++. +|++++.|+.|++||++ ++.+..+.   ..+.+++|+|++.
T Consensus       142 ~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~  217 (383)
T 3ei3_B          142 ATTLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCD  217 (383)
T ss_dssp             EEEEEETTS--CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCT
T ss_pred             EEEEEECCC--CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCC
Confidence            999999985  44555544   448899999999976 56699999999999995 55665554   4678899999998


Q ss_pred             -EEEEEEcCCeEEEEECCC----CeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEee---
Q 003842          651 -RYLAAAAENVVSILDAET----QACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELS---  720 (792)
Q Consensus       651 -~lla~s~dg~I~i~D~~t----~~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~---  720 (792)
                       .+++++.|+.|++||+++    +.++..+ +|...|.+++|+| ++.+|++++.| .|++||++++.....+....   
T Consensus       218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  296 (383)
T 3ei3_B          218 WLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ  296 (383)
T ss_dssp             TEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCC
T ss_pred             CEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccc
Confidence             889999999999999998    6677666 5999999999999 99999999998 99999998875443333211   


Q ss_pred             -cCC----------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcc--cCCCeEEEEEeCCCCEEEEEeCCC
Q 003842          721 -CNG----------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA--HEGLIAALAVSTETGYVASASHDK  786 (792)
Q Consensus       721 -~~~----------~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~--h~~~V~sl~fspdg~~LaSgs~DG  786 (792)
                       .+.          ..+..++|+|++.+  +++.|+.|+|||+.+++.+ .+.+  |...+.+++|+|++++|++|+ ||
T Consensus       297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~  373 (383)
T 3ei3_B          297 FQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF  373 (383)
T ss_dssp             CTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred             cccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence             111          23444556666655  6678999999999999887 5554  567888889999999999997 99


Q ss_pred             cEEEeC
Q 003842          787 FVKLWK  792 (792)
Q Consensus       787 ~I~IWd  792 (792)
                      .|+|||
T Consensus       374 ~i~iw~  379 (383)
T 3ei3_B          374 NILIWN  379 (383)
T ss_dssp             EEEEEE
T ss_pred             cEEEEe
Confidence            999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.3e-34  Score=312.99  Aligned_cols=246  Identities=19%  Similarity=0.313  Sum_probs=220.0

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      .+..+.+|...|.+++|+++|++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|+|||+
T Consensus        57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~  136 (319)
T 3frx_A           57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI  136 (319)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred             cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEecccCCCeEEEEEcCCC-----CeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEE
Q 003842          584 DNPGYSLRTFMGHSASVMSLDFHPNK-----DDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAA  655 (792)
Q Consensus       584 ~s~~~~i~~~~~h~~~V~sl~fspd~-----~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~  655 (792)
                      +  +..+..+.+|...|.+++|.|..     ..++++++.|+.|++||+++.+....+.   ..+.+++|+|++.+|+++
T Consensus       137 ~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~  214 (319)
T 3frx_A          137 K--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA  214 (319)
T ss_dssp             T--SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred             C--CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence            7  46778889999999999999863     3478899999999999999998887765   457889999999999999


Q ss_pred             EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEee--------cCCCceE
Q 003842          656 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELS--------CNGNKFH  727 (792)
Q Consensus       656 s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~--------~~~~~i~  727 (792)
                      +.|+.|++||+++++.+..+..+ ..|.+++|+|++.+|++++.+.+++|++...   ..+..+.        .+...+.
T Consensus       215 ~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~---~~~~~~~~~~~~~~~~~~~~v~  290 (319)
T 3frx_A          215 GKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQ---YLVDDLRPEFAGYSKAAEPHAV  290 (319)
T ss_dssp             ETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTEEEEEEETTE---EEEEEECCCCTTCCGGGCCCEE
T ss_pred             eCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcC---eeeeccCccccccccCcCccee
Confidence            99999999999999999888754 6899999999999999999889999999754   3344332        2355689


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003842          728 SCVFHPTYPSLLVIGCYQSLELWNMSEN  755 (792)
Q Consensus       728 si~fspdg~~L~sgs~dg~I~IwDl~~~  755 (792)
                      +++|+|+|++|++++.|+.|+|||+.+.
T Consensus       291 ~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          291 SLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EEEECCCCCEEEEeecCceEEEEEEeec
Confidence            9999999999999999999999998654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=9.9e-35  Score=323.33  Aligned_cols=293  Identities=23%  Similarity=0.306  Sum_probs=238.8

Q ss_pred             cceEEEEeCCCeeeecCCC--eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS  507 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~--~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~  507 (792)
                      ...+.|+|||.+++++...  +|||+.+++.+..+.......                        .+.    .......
T Consensus        67 V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~------------------------~~~----~~~~~~~  118 (393)
T 1erj_A           67 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAAN------------------------KDP----ENLNTSS  118 (393)
T ss_dssp             CCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-------------------------------------------
T ss_pred             EEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccc------------------------ccc----ccccccc
Confidence            4478999999999886543  889999887654332110000                        000    0000111


Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG  587 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~  587 (792)
                      ...+...|.+++|+|||++||+|+.|+.|+|||+.+++.+..+.+|...|++++|+|++.+|++++.|++|+|||+++ +
T Consensus       119 ~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~  197 (393)
T 1erj_A          119 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-G  197 (393)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-T
T ss_pred             cCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-C
Confidence            224455699999999999999999999999999999999999999999999999999999999999999999999987 5


Q ss_pred             ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----------eCCeeEEEEecCCCEEEEEEc
Q 003842          588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----------KGGTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----------~~~~~~v~~sp~~~~lla~s~  657 (792)
                      .....+. +...|.+++|+|.+..+|++|+.|+.|++||++++.++..+          ...+.+++|+|++..+++++.
T Consensus       198 ~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~  276 (393)
T 1erj_A          198 QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  276 (393)
T ss_dssp             EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence            5555554 66789999999955567889999999999999999877665          235788999999999999999


Q ss_pred             CCeEEEEECCCC------------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCC
Q 003842          658 ENVVSILDAETQ------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN  724 (792)
Q Consensus       658 dg~I~i~D~~t~------------~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~  724 (792)
                      |+.|++||+++.            .+...+.+|...|.+++|++++.+|++++.| .|++||+.++   .++..+.+|..
T Consensus       277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~~  353 (393)
T 1erj_A          277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRN  353 (393)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred             CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCCC
Confidence            999999999763            4566788899999999999999999999999 9999999876   67788889999


Q ss_pred             ceEEEEEeC------CCCEEEEEEcCCeEEEEECCCC
Q 003842          725 KFHSCVFHP------TYPSLLVIGCYQSLELWNMSEN  755 (792)
Q Consensus       725 ~i~si~fsp------dg~~L~sgs~dg~I~IwDl~~~  755 (792)
                      .|.+++|++      ++.+|++++.|+.|+||++...
T Consensus       354 ~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          354 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            999999986      6889999999999999998643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-35  Score=332.25  Aligned_cols=285  Identities=13%  Similarity=0.223  Sum_probs=235.8

Q ss_pred             eeeeeee-ecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC---Cc---eeEEeccCCCCEEEEEECCCCCeEEEEe
Q 003842          502 FKEANSV-RASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT---LK---SKTNLEEHSSLITDVRFSPSMPRLATSS  573 (792)
Q Consensus       502 ~~~~~~l-~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t---~~---~~~~l~~h~~~V~~i~fspdg~~Lasgs  573 (792)
                      .+.+..+ .+|.+.|+|++|+| ++++||+|+.||.|+|||+.+   +.   ....+ .|...|++++|+|++.+|++|+
T Consensus        52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s  130 (437)
T 3gre_A           52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSS  130 (437)
T ss_dssp             CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEe
Confidence            3567778 89999999999999 999999999999999999876   33   23333 5999999999999999999999


Q ss_pred             CCCcEEEEeCC--CCCceeEEecc------------cCCCeEEEE--EcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee
Q 003842          574 FDKTVRVWDAD--NPGYSLRTFMG------------HSASVMSLD--FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK  637 (792)
Q Consensus       574 ~Dg~V~IWdl~--s~~~~i~~~~~------------h~~~V~sl~--fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~  637 (792)
                      .||.|+|||++  ..+..+..+..            +...+.++.  +++++ .+|++++.|+.|++||+++++++..+.
T Consensus       131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~  209 (437)
T 3gre_A          131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIE  209 (437)
T ss_dssp             TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence            99999999995  11333333322            445566666  44554 577799999999999999999888775


Q ss_pred             C-----CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-CCCCCeEEEEEcC----CCCEEEEEeCC-eEEEEE
Q 003842          638 G-----GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDP----SGELLASVSED-SVRVWT  706 (792)
Q Consensus       638 ~-----~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~-~h~~~V~sv~~sp----dg~~Las~s~d-~I~IwD  706 (792)
                      .     .+.+++|+|++..+++++.||.|++||+++++++..+. .|...|.+++|+|    ++.+|++++.| .|++||
T Consensus       210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd  289 (437)
T 3gre_A          210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN  289 (437)
T ss_dssp             CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred             cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence            4     57889999999999999999999999999999999886 7888999996665    67799999999 899999


Q ss_pred             CCCCCCcceEEEeec--------------------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-E
Q 003842          707 VGSGSEGECVHELSC--------------------------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-T  759 (792)
Q Consensus       707 l~s~~~~~~i~~~~~--------------------------~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~  759 (792)
                      ++++   .++..+..                          |...|.+++|+ ++++|++++.|+.|++||+.+++.. .
T Consensus       290 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~  365 (437)
T 3gre_A          290 FVKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA  365 (437)
T ss_dssp             TTTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred             cCCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence            9876   44444442                          44568889999 7789999999999999999987644 2


Q ss_pred             Ecc-------------------------------------cCCCeEEEEEeCC--CCEEEEEeCCCcEEEeC
Q 003842          760 LTA-------------------------------------HEGLIAALAVSTE--TGYVASASHDKFVKLWK  792 (792)
Q Consensus       760 ~~~-------------------------------------h~~~V~sl~fspd--g~~LaSgs~DG~I~IWd  792 (792)
                      +.+                                     |...|++++|+++  +.+|++|+.||.|+||+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          366 VISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            332                                     8999999999998  77999999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.9e-34  Score=315.30  Aligned_cols=272  Identities=22%  Similarity=0.390  Sum_probs=238.6

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|+||+.++++++.+   +|||..+++                                              ...
T Consensus        67 V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~----------------------------------------------~~~  100 (354)
T 2pbi_B           67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN----------------------------------------------KEH  100 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCC----------------------------------------------EEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCC----------------------------------------------cce
Confidence            4578999999998886655   788865543                                              223


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC------ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV  580 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~------~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I  580 (792)
                      .+..|...|.+++|+|+|.+||+|+.|+.|++|++...      .....+..|...|.+++|++++..|++++.|++|+|
T Consensus       101 ~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~l  180 (354)
T 2pbi_B          101 AVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCAL  180 (354)
T ss_dssp             EEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             EEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEE
Confidence            45567788999999999999999999999999998643      345677889999999999999999999999999999


Q ss_pred             EeCCCCCceeEEecccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEE
Q 003842          581 WDADNPGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA  656 (792)
Q Consensus       581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s  656 (792)
                      ||+++ +..+..+.+|...|.+++|+|+. ..+|++|+.||.|++||+++++++..+..   .+.+++|+|++..+++++
T Consensus       181 wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s  259 (354)
T 2pbi_B          181 WDVES-GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS  259 (354)
T ss_dssp             EETTT-CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EeCCC-CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe
Confidence            99997 67888999999999999998863 35788999999999999999999887754   578899999999999999


Q ss_pred             cCCeEEEEECCCCeEEEEecCC--CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC
Q 003842          657 AENVVSILDAETQACRLSLQGH--TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP  733 (792)
Q Consensus       657 ~dg~I~i~D~~t~~~~~~l~~h--~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp  733 (792)
                      .|+.|++||+++.+.+..+..+  ...+.+++|+|++.+|++++.| .|++||+.++   ..+..+.+|...|.+++|+|
T Consensus       260 ~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~l~~h~~~v~~l~~sp  336 (354)
T 2pbi_B          260 DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG---SRVSILFGHENRVSTLRVSP  336 (354)
T ss_dssp             TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEEECT
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC---ceEEEEECCCCcEEEEEECC
Confidence            9999999999998877766543  3578999999999999999999 9999999776   67788889999999999999


Q ss_pred             CCCEEEEEEcCCeEEEEE
Q 003842          734 TYPSLLVIGCYQSLELWN  751 (792)
Q Consensus       734 dg~~L~sgs~dg~I~IwD  751 (792)
                      ++.+|++++.|+.|+||+
T Consensus       337 dg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          337 DGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEcCCCCEEecC
Confidence            999999999999999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.1e-34  Score=305.29  Aligned_cols=273  Identities=25%  Similarity=0.433  Sum_probs=239.4

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|+|||.++++++.+   +|||+.+++                                              ...
T Consensus        26 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~----------------------------------------------~~~   59 (312)
T 4ery_A           26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGK----------------------------------------------FEK   59 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCC----------------------------------------------EEE
T ss_pred             EEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----------------------------------------------cch
Confidence            4568999999998885443   778765543                                              233


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      .+.+|...|.+++|+|++++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++ 
T Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-  138 (312)
T 4ery_A           60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-  138 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-
T ss_pred             hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-
Confidence            5678999999999999999999999999999999999999999999999999999999999999999999999999987 


Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEcCCeEE
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVS  662 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~dg~I~  662 (792)
                      +..+..+..|...|.+++|+|++. +|++++.||.|++||+++++.+..+.    ..+..++|+|++.++++++.|+.|+
T Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  217 (312)
T 4ery_A          139 GKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK  217 (312)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             CEEEEEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence            677888999999999999999976 56699999999999999998877653    3467799999999999999999999


Q ss_pred             EEECCCCeEEEEecCCCCCeEE---EEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003842          663 ILDAETQACRLSLQGHTKPIDS---VCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL  738 (792)
Q Consensus       663 i~D~~t~~~~~~l~~h~~~V~s---v~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L  738 (792)
                      +||+++++.+..+.+|...+.+   ....+++.+|++++.| .|++||+.++   ..+..+.+|...|.+++|+|++.+|
T Consensus       218 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l  294 (312)
T 4ery_A          218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTENII  294 (312)
T ss_dssp             EEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECSSSSEE
T ss_pred             EEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc---hhhhhhhccCCcEEEEeecCcCCce
Confidence            9999999999999888765433   2334678899999999 9999999876   6788899999999999999999999


Q ss_pred             EEEE--cCCeEEEEECC
Q 003842          739 LVIG--CYQSLELWNMS  753 (792)
Q Consensus       739 ~sgs--~dg~I~IwDl~  753 (792)
                      ++++  .|+.|++|+.+
T Consensus       295 ~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          295 ASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEECTTTCCEEEEECC
T ss_pred             EEEEccCCccEEEecCC
Confidence            9987  58999999975

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=315.85  Aligned_cols=285  Identities=19%  Similarity=0.340  Sum_probs=232.6

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|+|||.++++++.+   +|||+.+++..                                           ....
T Consensus        19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~-------------------------------------------~~~~   55 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI-------------------------------------------CKSV   55 (345)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEEEEETTEEE-------------------------------------------EEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce-------------------------------------------eeee
Confidence            3468999999999886544   88987654311                                           0112


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~--~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      ...+|...|.+++|+|+|++||+|+.|+.|+|||+.++  +.+..+.+|...|++++|+|++++|++|+.|+.|+|||++
T Consensus        56 ~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~  135 (345)
T 3fm0_A           56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD  135 (345)
T ss_dssp             ECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred             eccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence            23689999999999999999999999999999999876  4577889999999999999999999999999999999998


Q ss_pred             CCC--ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE--EEee---CCeeEEEEecCCCEEEEEEc
Q 003842          585 NPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT--RVFK---GGTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       585 s~~--~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~--~~~~---~~~~~v~~sp~~~~lla~s~  657 (792)
                      +..  ..+..+.+|...|.+++|+|++. +|++++.|+.|++||++.+...  ..+.   ..+.+++|+|++.+|++++.
T Consensus       136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~  214 (345)
T 3fm0_A          136 EEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD  214 (345)
T ss_dssp             TTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence            643  34667889999999999999976 5669999999999999887533  4443   46788999999999999999


Q ss_pred             CCeEEEEECCC---------------CeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc-c-----
Q 003842          658 ENVVSILDAET---------------QACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG-E-----  714 (792)
Q Consensus       658 dg~I~i~D~~t---------------~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~-~-----  714 (792)
                      |+.|++||...               .+++..+.+ |...|.+++|++++.+|++++.| .|++|++...... .     
T Consensus       215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~  294 (345)
T 3fm0_A          215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL  294 (345)
T ss_dssp             TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE
T ss_pred             CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE
Confidence            99999999632               134555655 88999999999999999999999 9999998764321 1     


Q ss_pred             eEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEE
Q 003842          715 CVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       715 ~i~~~~~~~~~i~si~fspdg-~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      .......|...|.+++|+|++ .+|++++.||.|+||++.+++..
T Consensus       295 ~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred             EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence            122345788999999999998 49999999999999999887754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.4e-35  Score=374.70  Aligned_cols=352  Identities=20%  Similarity=0.356  Sum_probs=291.8

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeee-ccCCC------CCCCCCCCcceeccCC
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD------TDPRDAGGRGMDVSQG  499 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~-l~~d~------~~~~d~~~~~~d~~~~  499 (792)
                      ...+.|+|||.++++++.+   +|||+.+++.+..+...      ...+.+. +..+.      ....|+.+++|++..+
T Consensus       660 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~  733 (1249)
T 3sfz_A          660 VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH------SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK  733 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS
T ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC------CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc
Confidence            4568999999999886554   89999998776554421      1223222 33321      2345777889988766


Q ss_pred             cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe-----------------------------
Q 003842          500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-----------------------------  550 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l-----------------------------  550 (792)
                         +.+..+.+|.+.|++++|+|++++|++|+.||.|++||+.+++....+                             
T Consensus       734 ---~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg  810 (1249)
T 3sfz_A          734 ---ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG  810 (1249)
T ss_dssp             ---SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS
T ss_pred             ---chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC
Confidence               466778899999999999999999999999999999998766543332                             


Q ss_pred             --------------------------ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEE
Q 003842          551 --------------------------EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD  604 (792)
Q Consensus       551 --------------------------~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~  604 (792)
                                                .+|...|.+++|+|++.++++++.||.|++||+.+ +..+..+.+|...|.+++
T Consensus       811 ~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v~  889 (1249)
T 3sfz_A          811 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS-RLKVADCRGHLSWVHGVM  889 (1249)
T ss_dssp             SEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT-TEEEEEECCCSSCEEEEE
T ss_pred             CEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceeeecCCCccceEEEE
Confidence                                      16788899999999999999999999999999997 778888999999999999


Q ss_pred             EcCCCCeEEEEEeCCCcEEEEEcCCC----------------------------------------eeEEEeeCCeeEEE
Q 003842          605 FHPNKDDLICSCDGDGEIRYWSINNG----------------------------------------SCTRVFKGGTAQMR  644 (792)
Q Consensus       605 fspd~~~ll~sgs~Dg~I~iwdl~~~----------------------------------------~~~~~~~~~~~~v~  644 (792)
                      |+|++. +|++++.||.|++||+...                                        .........+.+++
T Consensus       890 ~spdg~-~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  968 (1249)
T 3sfz_A          890 FSPDGS-SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC  968 (1249)
T ss_dssp             ECTTSS-EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred             ECCCCC-EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEE
Confidence            999976 4569999999999997531                                        11111234577899


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC-----------
Q 003842          645 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-----------  712 (792)
Q Consensus       645 ~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~-----------  712 (792)
                      |+|++..+++++.+|.|++||+.+++.+..+.+|...|++++|+|++++|++++.| .|++||+.++..           
T Consensus       969 ~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~ 1048 (1249)
T 3sfz_A          969 LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVK 1048 (1249)
T ss_dssp             ECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEE
T ss_pred             EcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEE
Confidence            99999999999999999999999999999999999999999999999999999988 999999876411           


Q ss_pred             --------------------------cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCC
Q 003842          713 --------------------------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG  765 (792)
Q Consensus       713 --------------------------~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~  765 (792)
                                                ...+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+ .+.+|.+
T Consensus      1049 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~ 1128 (1249)
T 3sfz_A         1049 DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG 1128 (1249)
T ss_dssp             EEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSS
T ss_pred             EEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCC
Confidence                                      1223345567788999999999999999999999999999988866 6778999


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          766 LIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       766 ~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .|++++|+|++++|++++.||.|+|||
T Consensus      1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A         1129 CVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            999999999999999999999999996

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-35  Score=358.60  Aligned_cols=348  Identities=13%  Similarity=0.139  Sum_probs=257.4

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeee-ccCCC---CCCCCCCCcceeccCCcce
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD---TDPRDAGGRGMDVSQGFSF  502 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~-l~~d~---~~~~d~~~~~~d~~~~~~~  502 (792)
                      ...+.|+|||.++++++.+   +|||..+++......   .    ...|... +..+.   ....|..+++|++..+.  
T Consensus        20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~---~----~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~--   90 (902)
T 2oaj_A           20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE---D----RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQK--   90 (902)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS---S----CCCEEEEEEETTTEEEEEETTCEEEEEETTTCS--
T ss_pred             cEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC---C----CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCc--
Confidence            4578999999999886544   899988765433221   1    1223332 23321   12357788999988764  


Q ss_pred             eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-----------EEeccCCCCEEEEEECCC-CCeEE
Q 003842          503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-----------TNLEEHSSLITDVRFSPS-MPRLA  570 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~-----------~~l~~h~~~V~~i~fspd-g~~La  570 (792)
                       .+..+. |.+.|++++|+|++++|++|+.||.|++||+++++..           ..+.+|...|++|+|+|+ +..|+
T Consensus        91 -~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~  168 (902)
T 2oaj_A           91 -VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL  168 (902)
T ss_dssp             -EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred             -EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence             344444 7789999999999999999999999999999988754           234679999999999996 46899


Q ss_pred             EEeCCCcEEEEeCCCCCceeEEeccc------------------CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 003842          571 TSSFDKTVRVWDADNPGYSLRTFMGH------------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC  632 (792)
Q Consensus       571 sgs~Dg~V~IWdl~s~~~~i~~~~~h------------------~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~  632 (792)
                      +|+.||.| |||+++ +..+..+..|                  ...|++++|+|++. +|++++.||.|++||++++++
T Consensus       169 ~g~~dg~v-lWd~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          169 ISYEYVTL-TYSLVE-NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             EECSSCEE-EEETTT-TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTCCE
T ss_pred             EEeCCCcE-EEECCC-CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcE
Confidence            99999999 999997 6667777655                  57799999999976 667999999999999998877


Q ss_pred             EEE--e-------------------eCCeeEEEEec----CCCEE-----------------------------------
Q 003842          633 TRV--F-------------------KGGTAQMRFQP----HLGRY-----------------------------------  652 (792)
Q Consensus       633 ~~~--~-------------------~~~~~~v~~sp----~~~~l-----------------------------------  652 (792)
                      +..  +                   ...+..++|++    ++..+                                   
T Consensus       246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~  325 (902)
T 2oaj_A          246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK  325 (902)
T ss_dssp             EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred             EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence            542  1                   11345566643    22222                                   


Q ss_pred             ------------------------------------------EEEEcCCeEEEEECCCCeEEEE----------------
Q 003842          653 ------------------------------------------LAAAAENVVSILDAETQACRLS----------------  674 (792)
Q Consensus       653 ------------------------------------------la~s~dg~I~i~D~~t~~~~~~----------------  674 (792)
                                                                ++++.|+.|++||+.++.....                
T Consensus       326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~  405 (902)
T 2oaj_A          326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT  405 (902)
T ss_dssp             HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred             hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence                                                      2333345555666544422211                


Q ss_pred             -------------------------ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc-eEEE--ee-----
Q 003842          675 -------------------------LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE-CVHE--LS-----  720 (792)
Q Consensus       675 -------------------------l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~-~i~~--~~-----  720 (792)
                                               +.+|...+.+++|+|++++|++++.| +|++||+.++.... .+..  +.     
T Consensus       406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~  485 (902)
T 2oaj_A          406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNK  485 (902)
T ss_dssp             EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC
T ss_pred             EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCC
Confidence                                     12233334445567899999999999 99999998763211 1111  11     


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--------------------------------------------
Q 003842          721 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--------------------------------------------  756 (792)
Q Consensus       721 ~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~--------------------------------------------  756 (792)
                      +|...|.+++|+|++++||+|+.||+|+|||+.+++                                            
T Consensus       486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  565 (902)
T 2oaj_A          486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF  565 (902)
T ss_dssp             SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred             CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence            678899999999999999999999999999997662                                            


Q ss_pred             --EEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          757 --TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       757 --~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                        ...+.+|.+.|++|+|+||| +||+|+.||+|+|||
T Consensus       566 ~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd  602 (902)
T 2oaj_A          566 MPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLID  602 (902)
T ss_dssp             EEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEE
T ss_pred             ceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEE
Confidence              23667899999999999999 999999999999997

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.5e-34  Score=321.28  Aligned_cols=280  Identities=21%  Similarity=0.345  Sum_probs=248.4

Q ss_pred             eeeeeeecCCCCe-EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          503 KEANSVRASTSKV-ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       503 ~~~~~l~~H~~~V-~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      .....+.+|.+.| .|+.|  ++++|++|+.||.|++||+.+++.+..+.+|...|++++|++++ +|++|+.||+|++|
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw  188 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW  188 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence            4566889999885 56666  56799999999999999999999999999999999999999988 99999999999999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCC-CCeEEEEEeCCCcEEEEEcCCCeeE-----------------------EEee
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCT-----------------------RVFK  637 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd-~~~ll~sgs~Dg~I~iwdl~~~~~~-----------------------~~~~  637 (792)
                      |+++ +..+..+.+|...|.+++|++. +..++++++.||.|++||++++...                       ..+.
T Consensus       189 d~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (464)
T 3v7d_B          189 DIKK-GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  267 (464)
T ss_dssp             ETTT-TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred             ECCC-CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence            9997 6788899999999999999852 3467889999999999999887532                       2233


Q ss_pred             CC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 003842          638 GG-TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC  715 (792)
Q Consensus       638 ~~-~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~  715 (792)
                      ++ ....++++++..+++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.| .|++||++++   .+
T Consensus       268 ~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~  344 (464)
T 3v7d_B          268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---EL  344 (464)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---EE
T ss_pred             CccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cE
Confidence            22 2334568889999999999999999999999999999999999999999999999999999 9999999876   78


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       716 i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +..+..|...+.+++|+  +.+|++++.||.|++||+.++.......|...+..++|++++.+|++++ ||.|+|||
T Consensus       345 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd  418 (464)
T 3v7d_B          345 MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN  418 (464)
T ss_dssp             EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred             EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence            88899999999999997  5799999999999999999988776667888899999999999999998 99999996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.9e-34  Score=366.33  Aligned_cols=315  Identities=22%  Similarity=0.406  Sum_probs=271.8

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|++||.++++++.+   +|||+.+++                                              .+.
T Consensus       618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~----------------------------------------------~~~  651 (1249)
T 3sfz_A          618 VYHACFSQDGQRIASCGADKTLQVFKAETGE----------------------------------------------KLL  651 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCC----------------------------------------------EEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCC----------------------------------------------EEE
Confidence            4568999999998885443   788876653                                              334


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECC--CCCeEEEEeCCCcEEEEeCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWdl~  584 (792)
                      .+.+|.+.|.|++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...|++++|++  ++.+|++|+.||.|++||+.
T Consensus       652 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~  731 (1249)
T 3sfz_A          652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN  731 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT
T ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC
Confidence            5678999999999999999999999999999999999999999999999999999999  55589999999999999999


Q ss_pred             CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----------------------------
Q 003842          585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----------------------------  636 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----------------------------  636 (792)
                      + +..+..+.+|...|++++|+|++. ++++++.||.|++||+.++.....+                            
T Consensus       732 ~-~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d  809 (1249)
T 3sfz_A          732 Q-KECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD  809 (1249)
T ss_dssp             S-SSEEEEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT
T ss_pred             C-cchhheecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCC
Confidence            7 678888999999999999999976 5669999999999999877554332                            


Q ss_pred             ------------------------------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEE
Q 003842          637 ------------------------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVC  686 (792)
Q Consensus       637 ------------------------------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~  686 (792)
                                                    ...+.+++|+|++..+++++.++.|++||+.++..+..+.+|...|.+++
T Consensus       810 g~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~  889 (1249)
T 3sfz_A          810 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM  889 (1249)
T ss_dssp             SSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             CCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEE
Confidence                                          12356688999999999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCC-eEEEEECCCCCCc--------------------------ceEEE--------eecCCCceEEEEE
Q 003842          687 WDPSGELLASVSED-SVRVWTVGSGSEG--------------------------ECVHE--------LSCNGNKFHSCVF  731 (792)
Q Consensus       687 ~spdg~~Las~s~d-~I~IwDl~s~~~~--------------------------~~i~~--------~~~~~~~i~si~f  731 (792)
                      |+|++++|++++.| .|++||+.+....                          ..+..        .......+.+++|
T Consensus       890 ~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  969 (1249)
T 3sfz_A          890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL  969 (1249)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEE
Confidence            99999999999999 9999997532100                          00000        1123456899999


Q ss_pred             eCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          732 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       732 spdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +|+++++++++.+|.|++||+.+++.+ .+.+|...|++++|+|++++|++++.||.|++||
T Consensus       970 sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A          970 SPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp             CTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            999999999999999999999998877 6678999999999999999999999999999996

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.2e-36  Score=330.11  Aligned_cols=283  Identities=18%  Similarity=0.239  Sum_probs=228.9

Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~--~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      .+..|.+.|+|++|+|+|++||+|+.|+.|+|||+.++  +.+..+.+|...|++++|+|++++|++++.|+.|+|||+.
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            34567789999999999999999999999999999988  7888899999999999999999999999999999999998


Q ss_pred             CCC--ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---eEEEe----eCCeeEEEEecCCCEEEEE
Q 003842          585 NPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVF----KGGTAQMRFQPHLGRYLAA  655 (792)
Q Consensus       585 s~~--~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~---~~~~~----~~~~~~v~~sp~~~~lla~  655 (792)
                      +..  .....+..|...|.+++|+|++. +|++++.|+.|++||+++++   +...+    ...+.+++|+|++..++++
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~  164 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG  164 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence            743  25677788999999999999876 55589999999999999876   24444    3457889999999999999


Q ss_pred             EcCCeEEEEECC------------------CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc-ce
Q 003842          656 AAENVVSILDAE------------------TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG-EC  715 (792)
Q Consensus       656 s~dg~I~i~D~~------------------t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~-~~  715 (792)
                      +.|+.|++||++                  .++++..+ +|...|.+++|+|++++|++++.| .|++||+.++... ..
T Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~  243 (377)
T 3dwl_C          165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA  243 (377)
T ss_dssp             ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred             eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence            999999999985                  35566677 899999999999999999999999 9999999887431 12


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc---------------------------------------
Q 003842          716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK---------------------------------------  756 (792)
Q Consensus       716 i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~---------------------------------------  756 (792)
                      +..+..|...|.+++|+|++++|++++.++.+ +|+.....                                       
T Consensus       244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (377)
T 3dwl_C          244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS  322 (377)
T ss_dssp             CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred             eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence            66778899999999999999988887665555 77664211                                       


Q ss_pred             EE-E-------------EcccCCCeEEEEEeCCC-C---EEEEEeCCCcEEEeC
Q 003842          757 TM-T-------------LTAHEGLIAALAVSTET-G---YVASASHDKFVKLWK  792 (792)
Q Consensus       757 ~~-~-------------~~~h~~~V~sl~fspdg-~---~LaSgs~DG~I~IWd  792 (792)
                      .+ .             ...|.+.|+++++.++. .   .|+|||.||.|+|||
T Consensus       323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd  376 (377)
T 3dwl_C          323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT  376 (377)
T ss_dssp             --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred             cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence            00 0             01299999999976543 3   699999999999997

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-35  Score=329.57  Aligned_cols=277  Identities=20%  Similarity=0.315  Sum_probs=242.5

Q ss_pred             CCeEEEEEcCCCC-EEEEE----------eCCCeEEEEECCCCce---eEEeccCCCCEEEEEECCCCCeEEEEeCCCcE
Q 003842          513 SKVICCHFSSDGK-LLATG----------GHDKKAVLWHTDTLKS---KTNLEEHSSLITDVRFSPSMPRLATSSFDKTV  578 (792)
Q Consensus       513 ~~V~~lafspdg~-~Lasg----------s~Dg~I~vWdl~t~~~---~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V  578 (792)
                      ..|.|++|+|+|+ +||+|          +.|+.|+|||+.++..   +..+ .|...|++++|+|++.+|++++.||.|
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v   91 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL   91 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence            3588999999997 99999          8899999999998763   3333 588999999999999999999999999


Q ss_pred             EEEeCCC---CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe------eEEE------eeCCeeEE
Q 003842          579 RVWDADN---PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------CTRV------FKGGTAQM  643 (792)
Q Consensus       579 ~IWdl~s---~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~------~~~~------~~~~~~~v  643 (792)
                      +|||+.+   ....+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++      ....      ....+.++
T Consensus        92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  171 (416)
T 2pm9_A           92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL  171 (416)
T ss_dssp             EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred             EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence            9999986   3357888899999999999999966678899999999999999876      2222      34567889


Q ss_pred             EEecC-CCEEEEEEcCCeEEEEECCCCeEEEEecCC------CCCeEEEEEcCCC-CEEEEEeCC----eEEEEECCCCC
Q 003842          644 RFQPH-LGRYLAAAAENVVSILDAETQACRLSLQGH------TKPIDSVCWDPSG-ELLASVSED----SVRVWTVGSGS  711 (792)
Q Consensus       644 ~~sp~-~~~lla~s~dg~I~i~D~~t~~~~~~l~~h------~~~V~sv~~spdg-~~Las~s~d----~I~IwDl~s~~  711 (792)
                      +|+++ +..+++++.|+.|++||+++++.+..+..+      ...|.+++|+|++ .+|++++.|    .|++||++++.
T Consensus       172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~  251 (416)
T 2pm9_A          172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN  251 (416)
T ss_dssp             EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred             EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence            99999 678888889999999999999999988876      7889999999997 688888877    89999998753


Q ss_pred             CcceEEEee-cCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCC-CEEEEEeCCCc
Q 003842          712 EGECVHELS-CNGNKFHSCVFHP-TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKF  787 (792)
Q Consensus       712 ~~~~i~~~~-~~~~~i~si~fsp-dg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg-~~LaSgs~DG~  787 (792)
                        ..+..+. .|...|.+++|+| ++.+|++++.|+.|++||+.+++.+ .+..|...|++++|+|++ .+|++++.||.
T Consensus       252 --~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~  329 (416)
T 2pm9_A          252 --TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK  329 (416)
T ss_dssp             --SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred             --CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence              3445566 7889999999999 9999999999999999999998877 677999999999999999 89999999999


Q ss_pred             EEEeC
Q 003842          788 VKLWK  792 (792)
Q Consensus       788 I~IWd  792 (792)
                      |+|||
T Consensus       330 i~iw~  334 (416)
T 2pm9_A          330 IEVQT  334 (416)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=314.61  Aligned_cols=289  Identities=17%  Similarity=0.261  Sum_probs=245.0

Q ss_pred             cceeeeeeeecCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCC-Ccee-EEeccCCCCEEEEEECCCCCeEEEEeC
Q 003842          500 FSFKEANSVRASTSKVICCHFSSD---GKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSF  574 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~V~~lafspd---g~~Lasgs~Dg~I~vWdl~t-~~~~-~~l~~h~~~V~~i~fspdg~~Lasgs~  574 (792)
                      .+++.+..+.+|.+.|+|++|+|+   |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  106 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC  106 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence            455677788999999999999999   69999999999999999997 5554 778899999999999999999999999


Q ss_pred             CCcEEEEeCCCCCceeEEecccCCCeEEEEE--cCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEE
Q 003842          575 DKTVRVWDADNPGYSLRTFMGHSASVMSLDF--HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRY  652 (792)
Q Consensus       575 Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~f--spd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~l  652 (792)
                      ||.|+|||+++ +..+ .+..|...|.+++|  ++++ .+|++++.||.|++||+++++.+..+..+...+++......+
T Consensus       107 dg~v~iwd~~~-~~~~-~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (368)
T 3mmy_A          107 DKTAKMWDLSS-NQAI-QIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMA  183 (368)
T ss_dssp             TSEEEEEETTT-TEEE-EEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEE
T ss_pred             CCcEEEEEcCC-CCce-eeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCee
Confidence            99999999987 4433 46679999999999  7775 467799999999999999999988888777777777777899


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCE----EEEEeCC-eEEEEECCCCCCcceEEEeecCCC-
Q 003842          653 LAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGEL----LASVSED-SVRVWTVGSGSEGECVHELSCNGN-  724 (792)
Q Consensus       653 la~s~dg~I~i~D~~t~~~~~~l~--~h~~~V~sv~~spdg~~----Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~-  724 (792)
                      ++++.++.+.+||++.........  .+...+.++++.++...    +++++.| .|++||++.......+..+..|.. 
T Consensus       184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  263 (368)
T 3mmy_A          184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN  263 (368)
T ss_dssp             EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred             EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence            999999999999998875443332  24456777777666554    8888888 999999987644355566666655 


Q ss_pred             -----------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          725 -----------KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       725 -----------~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                                 .|.+++|+|++++|++++.||.|+|||+.+++++ .+..|...|++++|+|++++|++++.|+..+.|
T Consensus       264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~  342 (368)
T 3mmy_A          264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH  342 (368)
T ss_dssp             ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred             cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence                       6999999999999999999999999999999887 677899999999999999999999998865544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.2e-33  Score=315.48  Aligned_cols=271  Identities=20%  Similarity=0.397  Sum_probs=240.5

Q ss_pred             eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      +..+.+|.+.|++++|+  +++|++|+.||.|++||+.+++.+..+.+|...|.++.|+  +++|++|+.||.|++||+.
T Consensus       152 ~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~  227 (445)
T 2ovr_B          152 LRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE  227 (445)
T ss_dssp             EEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESS
T ss_pred             EEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECC
Confidence            34567899999999998  5699999999999999999999999999999999999995  5689999999999999999


Q ss_pred             CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeE
Q 003842          585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVV  661 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I  661 (792)
                      + +..+..+.+|...|.+++|  ++ .++++++.||.|++||+++++++..+..   .+.++.|  ++..+++++.|+.|
T Consensus       228 ~-~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i  301 (445)
T 2ovr_B          228 T-GQCLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSI  301 (445)
T ss_dssp             S-CCEEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCE
T ss_pred             C-CcEEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeE
Confidence            7 6778888999999999999  34 3567999999999999999999888764   3555666  78899999999999


Q ss_pred             EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec---CCCceEEEEEeCCCCE
Q 003842          662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC---NGNKFHSCVFHPTYPS  737 (792)
Q Consensus       662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~---~~~~i~si~fspdg~~  737 (792)
                      ++||+++++.+..+.+|...+.++.++  +++|++++.| .|++||++++   .++..+..   |...|.+++|+  +++
T Consensus       302 ~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~--~~~  374 (445)
T 2ovr_B          302 RVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG---QCLQTLQGPNKHQSAVTCLQFN--KNF  374 (445)
T ss_dssp             EEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECSTTSCSSCEEEEEEC--SSE
T ss_pred             EEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC---cEEEEEccCCCCCCCEEEEEEC--CCE
Confidence            999999999999999999999988874  6799999988 9999999876   56666665   77889999995  579


Q ss_pred             EEEEEcCCeEEEEECCCCcEE-EE-----cccCCCeEEEEEeCCCCEEEEEeCCCc----EEEeC
Q 003842          738 LLVIGCYQSLELWNMSENKTM-TL-----TAHEGLIAALAVSTETGYVASASHDKF----VKLWK  792 (792)
Q Consensus       738 L~sgs~dg~I~IwDl~~~~~~-~~-----~~h~~~V~sl~fspdg~~LaSgs~DG~----I~IWd  792 (792)
                      |++++.||.|++||+.+++.+ .+     ..|.+.|++++|+|++.+|++|+.||.    |.|||
T Consensus       375 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~d  439 (445)
T 2ovr_B          375 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD  439 (445)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEE
Confidence            999999999999999999877 33     378899999999999999999999998    99996

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-34  Score=354.12  Aligned_cols=352  Identities=12%  Similarity=0.055  Sum_probs=262.6

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeee-ccCCC----CCCCCCCCcceeccCCcc
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQGFS  501 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~-l~~d~----~~~~d~~~~~~d~~~~~~  501 (792)
                      ...+.|++ |.++++++.+   +|||+.+++.+..+.       ....+.++ +.++.    .+..|+.+++|++..+..
T Consensus        61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~  132 (902)
T 2oaj_A           61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL  132 (902)
T ss_dssp             EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            45688999 7777775444   899999987655442       11234443 33332    234677889999876542


Q ss_pred             eee-e-------eeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeEEeccC------------------C
Q 003842          502 FKE-A-------NSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEH------------------S  554 (792)
Q Consensus       502 ~~~-~-------~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h------------------~  554 (792)
                      ... +       ..+++|.+.|++++|+|+ +.+|++|+.||.| |||+.+++.+..+..|                  .
T Consensus       133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~  211 (902)
T 2oaj_A          133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRT  211 (902)
T ss_dssp             EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred             ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccC
Confidence            110 1       345789999999999996 5799999999999 9999999988888765                  5


Q ss_pred             CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE--ec---c-------------cCCCeEEEEEcC----CCCeE
Q 003842          555 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT--FM---G-------------HSASVMSLDFHP----NKDDL  612 (792)
Q Consensus       555 ~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~--~~---~-------------h~~~V~sl~fsp----d~~~l  612 (792)
                      ..|++++|+|++.+|++|+.||.|+|||+++ +.++..  +.   .             |...|++++|++    ++..+
T Consensus       212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~-g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~l  290 (902)
T 2oaj_A          212 PKVIQSLYHPNSLHIITIHEDNSLVFWDANS-GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSL  290 (902)
T ss_dssp             CCEEEEEECTTSSEEEEEETTCCEEEEETTT-CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEE
T ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEE
Confidence            7799999999999999999999999999987 444432  21   1             345789999953    33355


Q ss_pred             EEEEeCC-----CcEEEEE-------------------------------------------------------------
Q 003842          613 ICSCDGD-----GEIRYWS-------------------------------------------------------------  626 (792)
Q Consensus       613 l~sgs~D-----g~I~iwd-------------------------------------------------------------  626 (792)
                      +++|+.|     ..|++|+                                                             
T Consensus       291 l~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~  370 (902)
T 2oaj_A          291 LISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLI  370 (902)
T ss_dssp             EEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEE
T ss_pred             EEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEE
Confidence            6666443     1444444                                                             


Q ss_pred             ----------cCCCeeEEE-----------------------------------------eeC---CeeEEEEecCCCEE
Q 003842          627 ----------INNGSCTRV-----------------------------------------FKG---GTAQMRFQPHLGRY  652 (792)
Q Consensus       627 ----------l~~~~~~~~-----------------------------------------~~~---~~~~v~~sp~~~~l  652 (792)
                                +.++.....                                         +.+   .+..++|+|++..+
T Consensus       371 s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~l  450 (902)
T 2oaj_A          371 LGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAF  450 (902)
T ss_dssp             ETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEE
T ss_pred             cCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEE
Confidence                      433311100                                         000   01123456788899


Q ss_pred             EEEEcCCeEEEEECCCCeEE----EE--ec-----CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC--------
Q 003842          653 LAAAAENVVSILDAETQACR----LS--LQ-----GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE--------  712 (792)
Q Consensus       653 la~s~dg~I~i~D~~t~~~~----~~--l~-----~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~--------  712 (792)
                      ++++.|+.|++||+.++...    ..  +.     +|...|++|+|+|++++||+++.| +|+|||+.++..        
T Consensus       451 aSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~  530 (902)
T 2oaj_A          451 ITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPE  530 (902)
T ss_dssp             EEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------
T ss_pred             EEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCC
Confidence            99999999999999876421    11  22     788999999999999999999999 999999976521        


Q ss_pred             ----------------------------------cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          713 ----------------------------------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       713 ----------------------------------~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                                                        ..++..+..|...|++++|+||| +|++|+.|++|+|||+++...+
T Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~  609 (902)
T 2oaj_A          531 SGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAII  609 (902)
T ss_dssp             -------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEE
T ss_pred             CcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEE
Confidence                                              13467788899999999999999 9999999999999999888765


Q ss_pred             E------E-cccCCCeEEEEEe-----CCC---CEEEEEeCCCcEEEeC
Q 003842          759 T------L-TAHEGLIAALAVS-----TET---GYVASASHDKFVKLWK  792 (792)
Q Consensus       759 ~------~-~~h~~~V~sl~fs-----pdg---~~LaSgs~DG~I~IWd  792 (792)
                      .      + .+|.+.|++|+|+     |||   .+|++|+.||+|++||
T Consensus       610 ~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd  658 (902)
T 2oaj_A          610 YMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK  658 (902)
T ss_dssp             EEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred             EEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence            2      2 2789999999999     885   8999999999999996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7e-34  Score=344.53  Aligned_cols=313  Identities=19%  Similarity=0.335  Sum_probs=270.2

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|+|||.++++++.+   .|||+.+++                                              .+.
T Consensus        16 v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~----------------------------------------------~~~   49 (814)
T 3mkq_A           16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQV----------------------------------------------EVR   49 (814)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTE----------------------------------------------EEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCCc----------------------------------------------eEE
Confidence            4578999999998886443   678876543                                              334


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      .+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||+.+.
T Consensus        50 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~  129 (814)
T 3mkq_A           50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN  129 (814)
T ss_dssp             EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred             EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEec--CCCEEEEEEcCCe
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQP--HLGRYLAAAAENV  660 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp--~~~~lla~s~dg~  660 (792)
                      ......+.+|...|.+++|+|++..+|++++.||.|++||+.++.....+.    ..+..++|+|  ++..+++++.|+.
T Consensus       130 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~  209 (814)
T 3mkq_A          130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT  209 (814)
T ss_dssp             SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE
T ss_pred             ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE
Confidence            577888889999999999999545678899999999999998887666554    4578899999  8899999999999


Q ss_pred             EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE-E
Q 003842          661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS-L  738 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~-L  738 (792)
                      |++||+++++.+..+.+|...|.+++|+|++.+|++++.| .|++||+.++   ..+..+..+...+.+++|+|++.. +
T Consensus       210 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~  286 (814)
T 3mkq_A          210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNY  286 (814)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---SEEEEECCSSSSEEEEEECTTCGGGE
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEeecCCCcEEEEEEccCCCceE
Confidence            9999999999999999999999999999999999999988 9999999876   678888888899999999999874 3


Q ss_pred             EEEEcCCeEEEEECCCCc----------EEE----------------------------------EcccCCCeEEEEEeC
Q 003842          739 LVIGCYQSLELWNMSENK----------TMT----------------------------------LTAHEGLIAALAVST  774 (792)
Q Consensus       739 ~sgs~dg~I~IwDl~~~~----------~~~----------------------------------~~~h~~~V~sl~fsp  774 (792)
                      ++++.++.+.+|++....          .+.                                  +..+...+.+++|+|
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  366 (814)
T 3mkq_A          287 IASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP  366 (814)
T ss_dssp             EEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT
T ss_pred             EEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC
Confidence            556667788889876432          111                                  123445678999999


Q ss_pred             CCCEEEEEeCCCcEEEeC
Q 003842          775 ETGYVASASHDKFVKLWK  792 (792)
Q Consensus       775 dg~~LaSgs~DG~I~IWd  792 (792)
                      +|++|++++ ||.+.||+
T Consensus       367 dg~~la~~~-~~~~~i~~  383 (814)
T 3mkq_A          367 NGRFVTVVG-DGEYVIYT  383 (814)
T ss_dssp             TSSEEEEEE-TTEEEEEE
T ss_pred             CCCEEEEec-CCEEEEEE
Confidence            999999888 88999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=9.6e-34  Score=309.09  Aligned_cols=247  Identities=15%  Similarity=0.231  Sum_probs=208.5

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      ....+.+|...|.+++|+|++.+|++|+.|++|+|||+.+++.+..+.+|...|++++|+|++++|++++.|+.|+|||+
T Consensus        68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~  147 (343)
T 2xzm_R           68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI  147 (343)
T ss_dssp             EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred             ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEec---ccCCCeEEEEEcCCCC---------eEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecC
Q 003842          584 DNPGYSLRTFM---GHSASVMSLDFHPNKD---------DLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPH  648 (792)
Q Consensus       584 ~s~~~~i~~~~---~h~~~V~sl~fspd~~---------~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~  648 (792)
                      ..  .....+.   .|...|.+++|+|++.         .+|++++.|+.|++||. .......+.   ..+.+++|+|+
T Consensus       148 ~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~  224 (343)
T 2xzm_R          148 LG--ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPN  224 (343)
T ss_dssp             SS--CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTT
T ss_pred             cC--CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCC
Confidence            74  3333333   6889999999999863         47889999999999995 455555544   46788999999


Q ss_pred             CCEEEEEEcCCeEEEEECCC-CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEee-------
Q 003842          649 LGRYLAAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELS-------  720 (792)
Q Consensus       649 ~~~lla~s~dg~I~i~D~~t-~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~-------  720 (792)
                      +.+|++++.|+.|++||++. ......+. +...|.+++|+|++.+|++++++.|++||+.+..... +..+.       
T Consensus       225 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~  302 (343)
T 2xzm_R          225 GKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAP-VCTIEAEPITKA  302 (343)
T ss_dssp             SSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCS-EEECCCCSGGGB
T ss_pred             CCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCc-eEEeecCcchhh
Confidence            99999999999999999954 33333333 4567999999999999988776699999998764322 22222       


Q ss_pred             ----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003842          721 ----CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN  755 (792)
Q Consensus       721 ----~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~  755 (792)
                          +|...+.+++|+|++++|++|+.||.|++|++.++
T Consensus       303 ~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          303 EGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             TTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             hhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence                56778999999999999999999999999998654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1e-34  Score=321.77  Aligned_cols=277  Identities=19%  Similarity=0.373  Sum_probs=235.8

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|+|||.++++++.+   +|||+.+++                                              ...
T Consensus        69 V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~----------------------------------------------~~~  102 (380)
T 3iz6_a           69 VYSLDWTPEKNWIVSASQDGRLIVWNALTSQ----------------------------------------------KTH  102 (380)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEEETTTTE----------------------------------------------EEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------------------------------------------cce
Confidence            4578899999998886555   788876543                                              234


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------ceeEEeccCCCCEEEEEECCCC-CeEEEEeCCCcE
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTV  578 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~-------~~~~~l~~h~~~V~~i~fspdg-~~Lasgs~Dg~V  578 (792)
                      .+.+|...|.+++|+|+|++||+|+.|+.|+|||+.+.       .....+.+|.+.|.++.|.|++ ..|++|+.|++|
T Consensus       103 ~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i  182 (380)
T 3iz6_a          103 AIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTC  182 (380)
T ss_dssp             EEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCE
T ss_pred             EEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcE
Confidence            56789999999999999999999999999999998753       2345678999999999999974 579999999999


Q ss_pred             EEEeCCCCCceeEEe-----cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEEee---CCeeEEEEecCC
Q 003842          579 RVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFK---GGTAQMRFQPHL  649 (792)
Q Consensus       579 ~IWdl~s~~~~i~~~-----~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~~~---~~~~~v~~sp~~  649 (792)
                      ++||+.+ +..+..+     .+|...|.+++|++.+..+|++|+.|+.|++||++. ...+..+.   ..+.+++|+|++
T Consensus       183 ~~wd~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~  261 (380)
T 3iz6_a          183 VLWDVTT-GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG  261 (380)
T ss_dssp             EEECTTT-CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred             EEEEcCC-CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC
Confidence            9999998 5566665     578999999999886667888999999999999984 45565554   467899999999


Q ss_pred             CEEEEEEcCCeEEEEECCCCeEEEEecCCC-------CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe--
Q 003842          650 GRYLAAAAENVVSILDAETQACRLSLQGHT-------KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL--  719 (792)
Q Consensus       650 ~~lla~s~dg~I~i~D~~t~~~~~~l~~h~-------~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~--  719 (792)
                      .++++++.|+.|++||+++++.+..+..+.       ..|++++|+|+|++|++++.| .|++||+..+   +.+..+  
T Consensus       262 ~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---~~~~~~~~  338 (380)
T 3iz6_a          262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA---EMVLNLGT  338 (380)
T ss_dssp             SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC---CEEEEECC
T ss_pred             CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC---ceEEEEec
Confidence            999999999999999999999888876543       248999999999999999999 9999999776   444444  


Q ss_pred             --ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003842          720 --SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       720 --~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~  756 (792)
                        ..|...|.+++|+|++.+|++|+.|+.|+||++...+
T Consensus       339 ~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          339 LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence              5788999999999999999999999999999998654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.8e-34  Score=307.38  Aligned_cols=276  Identities=16%  Similarity=0.250  Sum_probs=241.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc--
Q 003842          511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY--  588 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~--  588 (792)
                      |.+.|.+++|+|||++++++..++.+.+|+...........+|...|++++|+|++++|++++ ||.|+|||+.+...  
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            456799999999999999998888887777666555555568999999999999999999999 99999999987432  


Q ss_pred             eeEEec--ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eEEEee---CCeeEEEEecCCCEEEEEEcCCeE
Q 003842          589 SLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFK---GGTAQMRFQPHLGRYLAAAAENVV  661 (792)
Q Consensus       589 ~i~~~~--~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I  661 (792)
                      .+..+.  .|...|.+++|+|++. +|++++.|+.|++||+++++  ....+.   ..+.+++|++++..+++++.|+.|
T Consensus        87 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v  165 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI  165 (337)
T ss_dssp             CSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence            333333  7899999999999976 56688999999999999887  344443   357789999999999999999999


Q ss_pred             EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003842          662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV  740 (792)
Q Consensus       662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s  740 (792)
                      ++||+++++.+..+..|...|.+++|+|++++|++++.| .|++||++++   ..+..+ .+...+.+++|+|++++|++
T Consensus       166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~-~~~~~v~~~~~s~~~~~l~~  241 (337)
T 1gxr_A          166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQH-DFTSQIFSLGYCPTGEWLAV  241 (337)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred             EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeee-cCCCceEEEEECCCCCEEEE
Confidence            999999999999999999999999999999999999998 9999999876   444444 36778999999999999999


Q ss_pred             EEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          741 IGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       741 gs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ++.++.|++||+.+++...+..|...|.+++|+|++++|++++.||.|++||
T Consensus       242 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~  293 (337)
T 1gxr_A          242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  293 (337)
T ss_dssp             EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence            9999999999999999989999999999999999999999999999999996

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-35  Score=338.26  Aligned_cols=305  Identities=10%  Similarity=0.070  Sum_probs=232.5

Q ss_pred             CCCCCCCcceeccCCc-ceeeeeeeecCCCCeEEEEEcCC------CCEEEEEeCCCeEEEEECCCCce-----------
Q 003842          485 DPRDAGGRGMDVSQGF-SFKEANSVRASTSKVICCHFSSD------GKLLATGGHDKKAVLWHTDTLKS-----------  546 (792)
Q Consensus       485 ~~~d~~~~~~d~~~~~-~~~~~~~l~~H~~~V~~lafspd------g~~Lasgs~Dg~I~vWdl~t~~~-----------  546 (792)
                      ...|..+++|++..+. .+.....+.+|.+.|.+|+|+|+      +.+||+|+.||+|+|||+.++..           
T Consensus       179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p  258 (524)
T 2j04_B          179 EKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP  258 (524)
T ss_dssp             ---CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred             CCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence            3456677888876543 22234557789999999999997      57999999999999999987642           


Q ss_pred             eEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEE--EEcCCCCeEEEEEeCCCcEEE
Q 003842          547 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL--DFHPNKDDLICSCDGDGEIRY  624 (792)
Q Consensus       547 ~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl--~fspd~~~ll~sgs~Dg~I~i  624 (792)
                      ...+.+|...|++++|++++ .|++|+.||+|++||++++......+.+|...|++|  +|++++..+|++|+.|++|+|
T Consensus       259 ~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl  337 (524)
T 2j04_B          259 SLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI  337 (524)
T ss_dssp             SEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred             eEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence            24678899999999999864 899999999999999987556667788999999999  567766478889999999999


Q ss_pred             EEcCCCeeEEEeeC-----CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003842          625 WSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE  699 (792)
Q Consensus       625 wdl~~~~~~~~~~~-----~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~  699 (792)
                      ||++++++...+.+     .+.+++|+|++..+++++.|+.|++||++++.++..+.+|...|++|+|+|+|++|++|+.
T Consensus       338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~  417 (524)
T 2j04_B          338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSA  417 (524)
T ss_dssp             ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEET
T ss_pred             EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEEC
Confidence            99998876554432     3568999999999999999999999999999888888899999999999999999999999


Q ss_pred             C-eEEEEECCCCCCcceEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCC
Q 003842          700 D-SVRVWTVGSGSEGECVHEL--SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTET  776 (792)
Q Consensus       700 d-~I~IwDl~s~~~~~~i~~~--~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg  776 (792)
                      | +|++||+... ........  ......+..++|+|++..+. ...+-.+..|+........+.+|...|.+|+|+|++
T Consensus       418 Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~  495 (524)
T 2j04_B          418 DGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETS  495 (524)
T ss_dssp             TTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECCCCCCCC-------------CCCSCCCEEECCST
T ss_pred             CCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccCCceecccccCCcceeeecCCCceEEEEECCCCC
Confidence            9 9999998643 11111100  01122577899999998542 222223333333344445788999999999999996


Q ss_pred             C---EEEEEeCCCcEEEeC
Q 003842          777 G---YVASASHDKFVKLWK  792 (792)
Q Consensus       777 ~---~LaSgs~DG~I~IWd  792 (792)
                      .   +||+|+.||.|+||+
T Consensus       496 ~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          496 AGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             TTTTEEEEECTTSEEEEEE
T ss_pred             CccHHHHhhccCceEEEEE
Confidence            4   999999999999995

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-33  Score=314.24  Aligned_cols=279  Identities=18%  Similarity=0.328  Sum_probs=238.8

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      ....+|...+.+.+++.++..+++++.|+.|+|||+.+++....+.. |...|++++|+|++++|++|+.||.|+|||+.
T Consensus        85 ~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A           85 LDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             EECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence            34447766654444443345688888999999999999998888775 88999999999999999999999999999998


Q ss_pred             CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEEee---CCeeEEEEecCCCEEEEEEcCCe
Q 003842          585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFK---GGTAQMRFQPHLGRYLAAAAENV  660 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~  660 (792)
                      + +..+..+.+|...|.+++|++   .+|++++.||.|++||++. ...+..+.   ..+.+++|+|++..+++++.|+.
T Consensus       165 ~-~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~  240 (401)
T 4aez_A          165 S-QTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV  240 (401)
T ss_dssp             T-CCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             C-CeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence            7 677888999999999999953   4778999999999999994 44555543   56788999999999999999999


Q ss_pred             EEEEECCCCeEEEEecCCCCCeEEEEEcCCCC-EEEEEe--CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003842          661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP  736 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~-~Las~s--~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~  736 (792)
                      |++||+++++.+..+..|...|.+++|+|++. ++++++  .| .|++||+.++   .++..+. +...+.+++|+|+++
T Consensus       241 v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~  316 (401)
T 4aez_A          241 VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---ARVNTVD-AGSQVTSLIWSPHSK  316 (401)
T ss_dssp             EEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---CEEEEEE-CSSCEEEEEECSSSS
T ss_pred             EEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---CEEEEEe-CCCcEEEEEECCCCC
Confidence            99999999999999999999999999999765 666655  46 9999999876   5555554 567899999999999


Q ss_pred             EEEEEE--cCCeEEEEECCCCcEE---EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          737 SLLVIG--CYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       737 ~L~sgs--~dg~I~IwDl~~~~~~---~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +|++++  .||.|+|||+.++...   .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus       317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~  377 (401)
T 4aez_A          317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR  377 (401)
T ss_dssp             EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred             eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            999965  7999999999987655   4678999999999999999999999999999996

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.6e-32  Score=310.89  Aligned_cols=275  Identities=19%  Similarity=0.281  Sum_probs=237.4

Q ss_pred             eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEEC--CCCCeEEEEeCCCcEEEEe
Q 003842          505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS--PSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fs--pdg~~Lasgs~Dg~V~IWd  582 (792)
                      +..+.+|.+.|++++|++++ +|++|+.||.|++||+++++.+..+.+|...|.+++|+  +++.+|++|+.||.|++||
T Consensus       155 ~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd  233 (464)
T 3v7d_B          155 LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK  233 (464)
T ss_dssp             EEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred             EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence            44567899999999999988 99999999999999999999999999999999999998  5778999999999999999


Q ss_pred             CCCCCc----------------------eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---
Q 003842          583 ADNPGY----------------------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---  637 (792)
Q Consensus       583 l~s~~~----------------------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---  637 (792)
                      +.+...                      .+..+.+|...|.++...  +. ++++++.||.|++||+++++++..+.   
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  310 (464)
T 3v7d_B          234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--GN-IVVSGSYDNTLIVWDVAQMKCLYILSGHT  310 (464)
T ss_dssp             CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC--CC-EEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence            987432                      256778899999888544  43 67799999999999999999988875   


Q ss_pred             CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceE
Q 003842          638 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV  716 (792)
Q Consensus       638 ~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i  716 (792)
                      ..+.+++|++++..+++++.|+.|++||+++++++..+.+|...|.+++|+  +.+|++++.| .|++||+.++.   ..
T Consensus       311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~---~~  385 (464)
T 3v7d_B          311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS---RK  385 (464)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC---EE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc---ee
Confidence            457889999999999999999999999999999999999999999999997  6899999999 99999998753   33


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE--EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          717 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT--LTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       717 ~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~--~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ... .+...+..++|++++.+|++++ |+.|++||+.+++.+.  +..|...|.+++|+ +..++++++.||.+.+|
T Consensus       386 ~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          386 FSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             EEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             eee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence            333 3566788889999999999888 8999999999999884  56889999999997 44556666677766655

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.3e-33  Score=301.79  Aligned_cols=249  Identities=21%  Similarity=0.319  Sum_probs=211.0

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--CceeEEeccCCCCEEEEEECCC--CCeEEEEeCCCcEEEE
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVW  581 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t--~~~~~~l~~h~~~V~~i~fspd--g~~Lasgs~Dg~V~IW  581 (792)
                      ..+.+|.+.|++++|+++|++||+|+.|++|+|||+++  .+.+.++.+|...|++++|+++  +++|++|+.|++|+||
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45789999999999999999999999999999999974  4678899999999999999874  8899999999999999


Q ss_pred             eCCCCC-ceeEEecccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCee--EEEe---eCCeeEEEEecC------
Q 003842          582 DADNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSC--TRVF---KGGTAQMRFQPH------  648 (792)
Q Consensus       582 dl~s~~-~~i~~~~~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~--~~~~---~~~~~~v~~sp~------  648 (792)
                      |++++. ..+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++++..  ...+   ...+.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998743 3566778899999999999972 34777999999999999987632  2222   346788999987      


Q ss_pred             -------CCEEEEEEcCCeEEEEECCCCe----EEEEecCCCCCeEEEEEcCCC---CEEEEEeCC-eEEEEECCCCCCc
Q 003842          649 -------LGRYLAAAAENVVSILDAETQA----CRLSLQGHTKPIDSVCWDPSG---ELLASVSED-SVRVWTVGSGSEG  713 (792)
Q Consensus       649 -------~~~lla~s~dg~I~i~D~~t~~----~~~~l~~h~~~V~sv~~spdg---~~Las~s~d-~I~IwDl~s~~~~  713 (792)
                             +..|++++.|+.|++||+++++    ....+.+|...|.+++|+|++   .+|++++.| +|+|||++.....
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~  242 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP  242 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence                   4689999999999999998765    667889999999999999985   799999999 9999999764322


Q ss_pred             ceEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003842          714 ECVHEL--SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       714 ~~i~~~--~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~  754 (792)
                      .....+  ..+...+.+++|+|++++|++++.|+.|+||+...
T Consensus       243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            222233  45677899999999999999999999999999763

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-33  Score=304.66  Aligned_cols=243  Identities=23%  Similarity=0.406  Sum_probs=195.8

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-------CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t-------~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      +|...|.+++|+|++++||+|+.|++|+|||++.       .+.+..+.+|...|++++|+|++++|++|+.|++|+|||
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            3999999999999999999999999999999853       456778899999999999999999999999999999999


Q ss_pred             CCCCC---ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC--eeEEEee---CCeeEEEEecC--CCEE
Q 003842          583 ADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--SCTRVFK---GGTAQMRFQPH--LGRY  652 (792)
Q Consensus       583 l~s~~---~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~--~~~~~~~---~~~~~v~~sp~--~~~l  652 (792)
                      ++..+   ..+..+.+|...|.+++|+|++. +|++|+.|++|++||+.++  +++..+.   ..+.++.|+|+  +..+
T Consensus       136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  214 (330)
T 2hes_X          136 TDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL  214 (330)
T ss_dssp             CCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEE
T ss_pred             ccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEE
Confidence            95422   45678889999999999999975 6679999999999999876  5666654   45778999998  5678


Q ss_pred             EEEEcCCeEEEEECCCC--------eEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC
Q 003842          653 LAAAAENVVSILDAETQ--------ACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN  722 (792)
Q Consensus       653 la~s~dg~I~i~D~~t~--------~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~  722 (792)
                      ++++.|+.|++||++.+        .+...+.. |...|.+++|++++ +|++++.| .|+|||+.++...........|
T Consensus       215 ~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h  293 (330)
T 2hes_X          215 CSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH  293 (330)
T ss_dssp             EEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred             EEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc
Confidence            99999999999998764        44555655 89999999999765 78888888 9999998754211122334567


Q ss_pred             CC-ceEEEEEeC--CCCEEEEEEcCCeEEEEECCC
Q 003842          723 GN-KFHSCVFHP--TYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       723 ~~-~i~si~fsp--dg~~L~sgs~dg~I~IwDl~~  754 (792)
                      .. .|.+++|+|  ++.+|++++.||.|+|||+.+
T Consensus       294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            66 899999999  688999999999999999865

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.5e-33  Score=309.38  Aligned_cols=287  Identities=17%  Similarity=0.350  Sum_probs=237.2

Q ss_pred             eeeeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEec-------------cCCCCEEEEEECC-CCCe
Q 003842          504 EANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLE-------------EHSSLITDVRFSP-SMPR  568 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-------------~h~~~V~~i~fsp-dg~~  568 (792)
                      ....+++|.+.|+|++|+| ++++||+|+.||.|+|||+.++.....+.             +|...|++++|+| ++.+
T Consensus        35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence            4566788999999999999 99999999999999999999877665543             5999999999999 7789


Q ss_pred             EEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCC--eEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEE
Q 003842          569 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQM  643 (792)
Q Consensus       569 Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~--~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v  643 (792)
                      |++++.||.|++||+.+ +..+..+. +...+.++.|++.+.  .++++++.|+.|++||+++++.+..+.   ..+.++
T Consensus       115 l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~  192 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNT-LQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV  192 (408)
T ss_dssp             EEEEETTSEEEEEETTT-TEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred             EEEEeCCCeEEEeeCCC-Cccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence            99999999999999997 55555554 788899999998643  378899999999999999998877765   457889


Q ss_pred             EEecCCCE-EEEEEcCCeEEEEECCCCe-EEEEe---------------cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEE
Q 003842          644 RFQPHLGR-YLAAAAENVVSILDAETQA-CRLSL---------------QGHTKPIDSVCWDPSGELLASVSED-SVRVW  705 (792)
Q Consensus       644 ~~sp~~~~-lla~s~dg~I~i~D~~t~~-~~~~l---------------~~h~~~V~sv~~spdg~~Las~s~d-~I~Iw  705 (792)
                      +|+|++.+ +++++.|+.|++||+++.. .+..+               ..|...|.+++|+|++++|++++.| .|++|
T Consensus       193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  272 (408)
T 4a11_B          193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW  272 (408)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence            99999985 7789999999999998875 44444               5688899999999999999999999 99999


Q ss_pred             ECCCCCCcceEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 003842          706 TVGSGSEGECVHEL--SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA  782 (792)
Q Consensus       706 Dl~s~~~~~~i~~~--~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSg  782 (792)
                      |+.++.........  ......+........+..+++++.++.|++||+.+++.+ .+.+|...|++++|+|++.+|+++
T Consensus       273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  352 (408)
T 4a11_B          273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG  352 (408)
T ss_dssp             ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence            99887432221111  111112222233344566888888999999999999887 677899999999999999999999


Q ss_pred             eCCCcEEEeC
Q 003842          783 SHDKFVKLWK  792 (792)
Q Consensus       783 s~DG~I~IWd  792 (792)
                      +.||.|+|||
T Consensus       353 ~~dg~i~iw~  362 (408)
T 4a11_B          353 SRDCNILAWV  362 (408)
T ss_dssp             ETTSCEEEEE
T ss_pred             CCCCeEEEEe
Confidence            9999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6e-34  Score=319.74  Aligned_cols=276  Identities=17%  Similarity=0.320  Sum_probs=228.0

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------eeEEeccCC------------CCEEEEEECCCC
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----------SKTNLEEHS------------SLITDVRFSPSM  566 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~-----------~~~~l~~h~------------~~V~~i~fspdg  566 (792)
                      .|.+.|+|++|+|+|++||+|+.||.|+|||+.+++           ....+.+|.            ..|++++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            467899999999999999999999999999999877           577888998            889999999998


Q ss_pred             --CeEEEEeCCCcEEEEeCCCCCce--------------------------------------eEE-ecccCCCeEEEEE
Q 003842          567 --PRLATSSFDKTVRVWDADNPGYS--------------------------------------LRT-FMGHSASVMSLDF  605 (792)
Q Consensus       567 --~~Lasgs~Dg~V~IWdl~s~~~~--------------------------------------i~~-~~~h~~~V~sl~f  605 (792)
                        .+|++++.|+.|+|||+.+....                                      ... ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999999752110                                      112 3679999999999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEEcCC-CeeEEE----------eeCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE--
Q 003842          606 HPNKDDLICSCDGDGEIRYWSINN-GSCTRV----------FKGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQAC--  671 (792)
Q Consensus       606 spd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~----------~~~~~~~v~~sp~~-~~lla~s~dg~I~i~D~~t~~~--  671 (792)
                      +|++. +|++| .|+.|++||++. +.++..          +...+.+++|+|++ ..+++++.|+.|++||+++++.  
T Consensus       186 ~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          186 NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            99976 55577 799999999994 444442          23457889999998 8999999999999999999886  


Q ss_pred             --EEEecCCCC------------CeEEEEEcCCCCEEEEEeCCeEEEEECCC-CCCcceEEEeecCCCc-----------
Q 003842          672 --RLSLQGHTK------------PIDSVCWDPSGELLASVSEDSVRVWTVGS-GSEGECVHELSCNGNK-----------  725 (792)
Q Consensus       672 --~~~l~~h~~------------~V~sv~~spdg~~Las~s~d~I~IwDl~s-~~~~~~i~~~~~~~~~-----------  725 (792)
                        +..+..|..            .|.+++|+|++++|++++.+.|+|||+++ +   .++..+..|...           
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~  340 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND  340 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence              778888876            89999999999999999888999999986 4   344455555321           


Q ss_pred             ----eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEccc---------------------------------CCCeE
Q 003842          726 ----FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH---------------------------------EGLIA  768 (792)
Q Consensus       726 ----i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h---------------------------------~~~V~  768 (792)
                          +..++|+|++++|++++.||.|+|||+.+++.+.+..|                                 ...|.
T Consensus       341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  420 (447)
T 3dw8_B          341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL  420 (447)
T ss_dssp             GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred             ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence                33489999999999999999999999999988765544                                 35688


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEe
Q 003842          769 ALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       769 sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      +++|+|++.+||+++.|+ ++||
T Consensus       421 ~~~~~p~~~~la~~~~~~-~~~~  442 (447)
T 3dw8_B          421 HTAWHPKENIIAVATTNN-LYIF  442 (447)
T ss_dssp             EEEECSSSSEEEEECSSC-EEEE
T ss_pred             EEEECCCCCEEEEEecce-eeee
Confidence            999999999999998776 6666

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.6e-34  Score=305.23  Aligned_cols=283  Identities=19%  Similarity=0.234  Sum_probs=216.4

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceeEEeccCCCCEEEEEECC--CCCeEEEEeCCCcEE
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVR  579 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~----~~~~~l~~h~~~V~~i~fsp--dg~~Lasgs~Dg~V~  579 (792)
                      ..+.+|.+.|+|++|+|++++||+|+.||.|+|||+.++    +....+.+|...|++++|+|  ++.+|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            356799999999999999999999999999999999876    46677789999999999999  699999999999999


Q ss_pred             EEeCCCCC--------ceeEEecccCCCeEEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeEEEe-------------
Q 003842          580 VWDADNPG--------YSLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVF-------------  636 (792)
Q Consensus       580 IWdl~s~~--------~~i~~~~~h~~~V~sl~fspd--~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-------------  636 (792)
                      |||+++..        ..+..+..|...|.+++|+|+  +. +|++++.||.|++||+++++.+..+             
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            99998743        457788899999999999998  55 6669999999999999987654322             


Q ss_pred             ---eCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeE--EEEecCCCCCeEEEEEcCCC----CEEEEEeCC-eEE
Q 003842          637 ---KGGTAQMRFQPH---LGRYLAAAAENVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSG----ELLASVSED-SVR  703 (792)
Q Consensus       637 ---~~~~~~v~~sp~---~~~lla~s~dg~I~i~D~~t~~~--~~~l~~h~~~V~sv~~spdg----~~Las~s~d-~I~  703 (792)
                         ...+.++.|+|+   +..+++++.++.+.+|+...++.  +..+.+|...|++++|+|++    ++|++++.| .|+
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence               235678999997   88999999999998888888765  77788899999999999998    899999999 999


Q ss_pred             EEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 003842          704 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC----YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY  778 (792)
Q Consensus       704 IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~----dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~  778 (792)
                      +||++.+..   .............+.+.+....+..+..    ...+.+|+....+.+ .+.+|...|++++|+|++++
T Consensus       244 iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~  320 (351)
T 3f3f_A          244 IFKITEKLS---PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI  320 (351)
T ss_dssp             EEEEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred             EEeCCCCcC---ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence            999986532   2222222223333344444443433332    335556665555555 67789999999999999999


Q ss_pred             EEEEeCCCcEEEeC
Q 003842          779 VASASHDKFVKLWK  792 (792)
Q Consensus       779 LaSgs~DG~I~IWd  792 (792)
                      |++|+.||.|+|||
T Consensus       321 l~s~~~dg~v~iw~  334 (351)
T 3f3f_A          321 LSSAGDDGKVRLWK  334 (351)
T ss_dssp             EEEEETTSCEEEEE
T ss_pred             EEEecCCCcEEEEe
Confidence            99999999999996

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5e-33  Score=312.04  Aligned_cols=268  Identities=22%  Similarity=0.409  Sum_probs=231.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003842          515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT  592 (792)
Q Consensus       515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~--~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~  592 (792)
                      +.+|+||++ ++||+|. |++|+|||+.+++.+..+.  +|...|++|+|+|+|++|++|+.||.|+|||+.+ +..+..
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~-~~~~~~  184 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRN  184 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEE
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC-CcEEEE
Confidence            678999976 4888775 9999999999999887665  6778899999999999999999999999999998 788899


Q ss_pred             ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEEee---CCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003842          593 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAET  668 (792)
Q Consensus       593 ~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t  668 (792)
                      +.+|...|.+++|++   .++++|+.|+.+++||..... .+..+.   ..+..+.+.+++..+++++.|+.|++||..+
T Consensus       185 ~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~  261 (420)
T 4gga_A          185 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  261 (420)
T ss_dssp             ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence            999999999999874   478899999999999998754 334443   4567789999999999999999999999987


Q ss_pred             Ce----EEEEecCCCCCeEEEEEcCCCC-EEEEE--eCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003842          669 QA----CRLSLQGHTKPIDSVCWDPSGE-LLASV--SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV  740 (792)
Q Consensus       669 ~~----~~~~l~~h~~~V~sv~~spdg~-~Las~--s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s  740 (792)
                      ++    .+.....|...|.+++|+|++. +++++  +.| .|++||+.++   .++..+.. ...+.++.|+++++.+++
T Consensus       262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~-~~~v~~~~~~~~~~~lv~  337 (420)
T 4gga_A          262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDA-HSQVCSILWSPHYKELIS  337 (420)
T ss_dssp             CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred             ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeecc-ccceeeeeecCCCCeEEE
Confidence            64    4566778999999999999665 55554  456 9999999877   56665554 457889999999999988


Q ss_pred             EE--cCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          741 IG--CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       741 gs--~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ++  .|+.|+|||+.+++++ .+.+|.+.|++++|+|||.+||||+.||+|+|||
T Consensus       338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd  392 (420)
T 4gga_A          338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  392 (420)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            76  6899999999999887 7889999999999999999999999999999997

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.7e-34  Score=325.75  Aligned_cols=281  Identities=18%  Similarity=0.306  Sum_probs=222.9

Q ss_pred             eeeeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeE--EeccCCCCEEEEEECC-CCCeEEEEeCCCcEE
Q 003842          504 EANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSP-SMPRLATSSFDKTVR  579 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~--~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~  579 (792)
                      ......+|...|+||+|+| ++++||+|+.||.|+|||+.+++...  .+.+|.+.|++|+|+| ++.+|++|+.||+|+
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence            3456678999999999999 66799999999999999998776544  4568999999999998 688999999999999


Q ss_pred             EEeCCCCCceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---eCCeeEEEEecCCCE-E
Q 003842          580 VWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGR-Y  652 (792)
Q Consensus       580 IWdl~s~~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~-l  652 (792)
                      |||+++ . .+..+.   .+...+.+++|++++. +|++|+.||.|++||++.. .+..+   ...+.+++|+|++.. +
T Consensus       191 iwd~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~  266 (435)
T 4e54_B          191 LQDFKG-N-ILRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFL  266 (435)
T ss_dssp             EEETTS-C-EEEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred             EeeccC-C-ceeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCCceEE
Confidence            999985 3 333332   2345678999999976 6669999999999999754 33333   456888999999874 5


Q ss_pred             EEEEcCCeEEEEECCCCeEEE---EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCC----
Q 003842          653 LAAAAENVVSILDAETQACRL---SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN----  724 (792)
Q Consensus       653 la~s~dg~I~i~D~~t~~~~~---~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~----  724 (792)
                      ++++.|+.|+|||+++.+...   ...+|...|++++|+|+|.+|++++.| .|+|||+.++.   +...+..|..    
T Consensus       267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~---~~~~~~~~~~~~~~  343 (435)
T 4e54_B          267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD---CPLGLIPHPHRHFQ  343 (435)
T ss_dssp             EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS---SEEEECCCCCCCCS
T ss_pred             EEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc---cceEEecccccccc
Confidence            677889999999998865433   335699999999999999999999999 99999998763   3333333321    


Q ss_pred             --ceEEEEEeCCCCEEEEEEc------------CCeEEEEECCCCcEE-EE-cccCCCeEEE-EEeCCCCEEEEEeCCCc
Q 003842          725 --KFHSCVFHPTYPSLLVIGC------------YQSLELWNMSENKTM-TL-TAHEGLIAAL-AVSTETGYVASASHDKF  787 (792)
Q Consensus       725 --~i~si~fspdg~~L~sgs~------------dg~I~IwDl~~~~~~-~~-~~h~~~V~sl-~fspdg~~LaSgs~DG~  787 (792)
                        .+..+.|++++.+++++..            ++.|++||..+++.+ .+ .+|...|.++ +|+|+|.+||+|+ |+.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~  422 (435)
T 4e54_B          344 HLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYH  422 (435)
T ss_dssp             SSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSE
T ss_pred             cceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCc
Confidence              2345577777777776643            357999999999887 33 4688888887 6999999999876 889


Q ss_pred             EEEeC
Q 003842          788 VKLWK  792 (792)
Q Consensus       788 I~IWd  792 (792)
                      |+|||
T Consensus       423 i~iW~  427 (435)
T 4e54_B          423 ILIWS  427 (435)
T ss_dssp             EEECC
T ss_pred             EEEEE
Confidence            99997

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1e-32  Score=309.57  Aligned_cols=296  Identities=18%  Similarity=0.314  Sum_probs=246.9

Q ss_pred             cCCCCCceeccCCCCCCCCCcceEEEEeCCCeeee-cCCCeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCC
Q 003842          410 THTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLT-SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRD  488 (792)
Q Consensus       410 t~tp~~~~~~p~~p~~~~~~k~~l~~s~Dg~~~~s-s~s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d  488 (792)
                      ..+|.+++.+|.+...-..  .++.||+++...+. ++..+|||+.+|+...                            
T Consensus        90 ~~~p~~~l~ap~~~~d~y~--~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~----------------------------  139 (420)
T 4gga_A           90 PSLPDRILDAPEIRNDYYL--NLVDWSSGNVLAVALDNSVYLWSASSGDILQ----------------------------  139 (420)
T ss_dssp             CSSCSEEEECTTCCCCTTC--BCEEECTTSEEEEEETTEEEEEETTTCCEEE----------------------------
T ss_pred             CCCCceEEECCCCcccccc--eeEEECCCCEEEEEeCCEEEEEECCCCCEEE----------------------------
Confidence            3567888888887754332  47899987633222 3444889988875431                            


Q ss_pred             CCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCe
Q 003842          489 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR  568 (792)
Q Consensus       489 ~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~  568 (792)
                                      +..+.+|...|+||+|+|||++||+|+.||.|+|||+++++.+..+.+|...|.++.|+  +.+
T Consensus       140 ----------------~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~  201 (420)
T 4gga_A          140 ----------------LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYI  201 (420)
T ss_dssp             ----------------EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTE
T ss_pred             ----------------EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCE
Confidence                            22356788899999999999999999999999999999999999999999999999885  679


Q ss_pred             EEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE----EE---eeCCee
Q 003842          569 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT----RV---FKGGTA  641 (792)
Q Consensus       569 Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~----~~---~~~~~~  641 (792)
                      |++|+.|+.+++||.......+..+.+|...+..+.|++++. ++++++.|+.|++||+.+++..    ..   ....+.
T Consensus       202 l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~  280 (420)
T 4gga_A          202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK  280 (420)
T ss_dssp             EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEE
T ss_pred             EEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccceEEeeccccccceeeeeecccCCcee
Confidence            999999999999999987788889999999999999999976 5669999999999999876532    22   345678


Q ss_pred             EEEEecCCCEEEEE---EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe--CC-eEEEEECCCCCCcce
Q 003842          642 QMRFQPHLGRYLAA---AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGEC  715 (792)
Q Consensus       642 ~v~~sp~~~~lla~---s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s--~d-~I~IwDl~s~~~~~~  715 (792)
                      .++|+|.+..+++.   +.|+.|++||+++++++..+..| ..+.++.|+++++.|++++  .| .|+|||+.++   .+
T Consensus       281 ~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~---~~  356 (420)
T 4gga_A          281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---AK  356 (420)
T ss_dssp             EEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---CE
T ss_pred             eeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---cE
Confidence            89999988766543   35899999999999999888755 5688999999999888765  45 8999999876   78


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       716 i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      +..+.+|...|.+++|+|++.+|++++.|++|+|||+.+....
T Consensus       357 v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          357 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence            8899999999999999999999999999999999999876544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.4e-33  Score=339.89  Aligned_cols=285  Identities=18%  Similarity=0.311  Sum_probs=254.6

Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      ++..+.+.+|.+.|+|++|+|+|++||+|+.||.|+|||+.+++.+..+..|...|++++|+|++++|++++.||.|+||
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeEEEee---CCeeEEEEec-CCCEEEEEE
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFK---GGTAQMRFQP-HLGRYLAAA  656 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~---~~~~~v~~sp-~~~~lla~s  656 (792)
                      |+.+ +..+..+.+|...|++++|+|++.. |++++.||.|++||+.++ .....+.   ..+.+++|+| ++..+++++
T Consensus        83 ~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  160 (814)
T 3mkq_A           83 NYNT-GEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (814)
T ss_dssp             ETTT-CCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             ECCC-CcEEEEEecCCCCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence            9997 6778888999999999999999874 559999999999999987 5555554   4578899999 778899999


Q ss_pred             cCCeEEEEECCCCeEEEEecCCC-CCeEEEEEcC--CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe
Q 003842          657 AENVVSILDAETQACRLSLQGHT-KPIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH  732 (792)
Q Consensus       657 ~dg~I~i~D~~t~~~~~~l~~h~-~~V~sv~~sp--dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fs  732 (792)
                      .|+.|++||++++.....+..+. ..|.+++|+|  ++.+|++++.| .|++||+.++   .++..+..|...|.+++|+
T Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~  237 (814)
T 3mkq_A          161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFH  237 (814)
T ss_dssp             TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEEC
T ss_pred             CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEc
Confidence            99999999999887777776654 8899999999  99999999999 9999999776   6788888899999999999


Q ss_pred             CCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC--EEEEEeCCCcEEEeC
Q 003842          733 PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG--YVASASHDKFVKLWK  792 (792)
Q Consensus       733 pdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~--~LaSgs~DG~I~IWd  792 (792)
                      |++.+|++++.||.|++||+.+++.+ .+..|...|.+++|+|++.  ++++++ |+.+.+|+
T Consensus       238 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~  299 (814)
T 3mkq_A          238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS  299 (814)
T ss_dssp             SSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence            99999999999999999999998877 6778889999999999987  455554 55666663

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.9e-34  Score=311.27  Aligned_cols=250  Identities=18%  Similarity=0.282  Sum_probs=202.5

Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEECC--CCCeEEEEeCCCcEEEEe
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWd  582 (792)
                      .+.+|.+.|++++|+++|++||+|+.|++|+|||+.++.  .+..+.+|...|++++|++  ++.+|++|+.|++|+|||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            456999999999999999999999999999999998775  4678899999999999986  488999999999999999


Q ss_pred             CCCCC-ceeEEecccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCe
Q 003842          583 ADNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV  660 (792)
Q Consensus       583 l~s~~-~~i~~~~~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~  660 (792)
                      ++++. ..+..+.+|...|.+++|+|++ ..+|++|+.|+.|++||++.+.....                         
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~-------------------------  142 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV-------------------------  142 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE-------------------------
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce-------------------------
Confidence            98743 4566788999999999999983 35777999999999999876531110                         


Q ss_pred             EEEEECCCCeEEEEecCCCCCeEEEEEcCC-----------------CCEEEEEeCC-eEEEEECCCCCCcceEEEeecC
Q 003842          661 VSILDAETQACRLSLQGHTKPIDSVCWDPS-----------------GELLASVSED-SVRVWTVGSGSEGECVHELSCN  722 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spd-----------------g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~  722 (792)
                                 ...+.+|...|.+++|+|+                 +++|++++.| .|++||++......++..+.+|
T Consensus       143 -----------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h  211 (316)
T 3bg1_A          143 -----------KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH  211 (316)
T ss_dssp             -----------CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred             -----------eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence                       0112234444555555554                 5789999999 9999999755444567788899


Q ss_pred             CCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCC---c--EEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          723 GNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSEN---K--TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       723 ~~~i~si~fspdg----~~L~sgs~dg~I~IwDl~~~---~--~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ...|.+++|+|++    .+|++++.|++|+|||+.+.   .  ...+..|...|++++|+|++.+||+++.||.|+||+
T Consensus       212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~  290 (316)
T 3bg1_A          212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK  290 (316)
T ss_dssp             SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred             CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence            9999999999986    88999999999999999763   1  124567899999999999999999999999999996

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=8.4e-34  Score=306.47  Aligned_cols=275  Identities=14%  Similarity=0.126  Sum_probs=236.2

Q ss_pred             eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEE
Q 003842          505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRV  580 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~---~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~I  580 (792)
                      +....+|.+.|++++|+|++++|++++.||.|+|||+.++.   ....+..|...|++++|+|+++ +|++|+.||.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            34456899999999999999999999999999999998877   3455668999999999999999 9999999999999


Q ss_pred             EeC-CCCCceeEEecc--cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC---------CeeEEEe--eCCeeEEEEe
Q 003842          581 WDA-DNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---------GSCTRVF--KGGTAQMRFQ  646 (792)
Q Consensus       581 Wdl-~s~~~~i~~~~~--h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~---------~~~~~~~--~~~~~~v~~s  646 (792)
                      ||+ .+ + ....+.+  |...|.+++|+| + .+|++++.|+.|++||+++         ++++..+  ...+.+++|+
T Consensus        84 wd~~~~-~-~~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  159 (342)
T 1yfq_A           84 VDLIGS-P-SFQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             ECSSSS-S-SEEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             EEeccC-C-ceEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec
Confidence            999 76 3 3477788  999999999999 4 4677999999999999987         5554443  4567788898


Q ss_pred             cCCCEEEEEEcCCeEEEEECCC-Ce--EEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCC---CcceEEE
Q 003842          647 PHLGRYLAAAAENVVSILDAET-QA--CRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGS---EGECVHE  718 (792)
Q Consensus       647 p~~~~lla~s~dg~I~i~D~~t-~~--~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~---~~~~i~~  718 (792)
                      +++  +++++.++.|++||+++ +.  .......|...|.+++|+| ++++|++++.| .|++|++....   ....+..
T Consensus       160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~  237 (342)
T 1yfq_A          160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence            876  99999999999999998 43  4445566888999999999 99999999999 99999997651   0244555


Q ss_pred             eecCCC---------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEccc-CCCeEEEEEeCCCCEEEEEeCCCc
Q 003842          719 LSCNGN---------KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAALAVSTETGYVASASHDKF  787 (792)
Q Consensus       719 ~~~~~~---------~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h-~~~V~sl~fspdg~~LaSgs~DG~  787 (792)
                      +..+..         .|.+++|+|++++|++++.||.|++||+.+++.+ .+..| ...|++++  +++++|++|+.||.
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            666644         8999999999999999999999999999999877 66777 99999999  99999999999998

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=293.04  Aligned_cols=268  Identities=22%  Similarity=0.397  Sum_probs=227.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003842          515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT  592 (792)
Q Consensus       515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~--~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~  592 (792)
                      +.+|+||+++ +||+|. |++|+|||+++++++..+.  +|...|++++|+|++++|++|+.||+|+|||+++ ++.+..
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~-~~~~~~  104 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRN  104 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEE
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC-ceeEEE
Confidence            5789999986 777765 9999999999999888765  6788899999999999999999999999999998 788899


Q ss_pred             ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEe---eCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003842          593 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAET  668 (792)
Q Consensus       593 ~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~---~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t  668 (792)
                      +.+|...+.++.+.+   .++++++.++.+++|+...... +..+   ...+..+.+.+++..+++++.|+.|++||+++
T Consensus       105 ~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          105 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence            999999998887764   3788999999999999987643 3333   34567788999999999999999999999987


Q ss_pred             Ce----EEEEecCCCCCeEEEEEcCCCC-EEE--EEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003842          669 QA----CRLSLQGHTKPIDSVCWDPSGE-LLA--SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV  740 (792)
Q Consensus       669 ~~----~~~~l~~h~~~V~sv~~spdg~-~La--s~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s  740 (792)
                      ++    .......+...|.++++++++. +++  +++.+ .|++||....   ... ....+...+..+.|++++..+++
T Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~  257 (318)
T 4ggc_A          182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACL-SAVDAHSQVCSILWSPHYKELIS  257 (318)
T ss_dssp             BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---CEE-EEEECSSCEEEEEEETTTTEEEE
T ss_pred             CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---ccc-ccccceeeeeeeeecccccceEE
Confidence            64    3455566888999999999766 332  34455 8999999765   232 33446678999999999999887


Q ss_pred             EE--cCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          741 IG--CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       741 gs--~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ++  .|+.|+|||+.+++++ .+.+|.+.|++++|+||+++||||+.||+|+|||
T Consensus       258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  312 (318)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            76  6899999999999887 7889999999999999999999999999999997

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8.1e-34  Score=313.23  Aligned_cols=278  Identities=14%  Similarity=0.126  Sum_probs=222.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCC-------eEEEEECCCCce----------eEEeccCCCCEEEEEECCCCCeEEEE--
Q 003842          512 TSKVICCHFSSDGKLLATGGHDK-------KAVLWHTDTLKS----------KTNLEEHSSLITDVRFSPSMPRLATS--  572 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg-------~I~vWdl~t~~~----------~~~l~~h~~~V~~i~fspdg~~Lasg--  572 (792)
                      .-+|+|++|+|||++||+|+.|.       +|+||++.....          ...+..|...|.+++|+  ++.+++|  
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence            35799999999999999997543       599999875432          12456788889988875  4466655  


Q ss_pred             ---------eCCCcEEEEeCCCCCceeEEec--------ccCCCeEEEEEcCCCCeEE-EEEeCCCcEEEEEcCCCeeEE
Q 003842          573 ---------SFDKTVRVWDADNPGYSLRTFM--------GHSASVMSLDFHPNKDDLI-CSCDGDGEIRYWSINNGSCTR  634 (792)
Q Consensus       573 ---------s~Dg~V~IWdl~s~~~~i~~~~--------~h~~~V~sl~fspd~~~ll-~sgs~Dg~I~iwdl~~~~~~~  634 (792)
                               +.|+.|++|++......+....        .+...+.+++|+|||..++ ++++.|++|+|||+++++++.
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence                     4578899999886544333221        3456689999999998765 455679999999999999887


Q ss_pred             Eee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE--EecCCCCCeEEEEEcCCCCEEEEEeCC-----eEEEE
Q 003842          635 VFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED-----SVRVW  705 (792)
Q Consensus       635 ~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~--~l~~h~~~V~sv~~spdg~~Las~s~d-----~I~Iw  705 (792)
                      .+.  ..+.+++|+|++.++++++ ++.+.+|+..++..+.  ....|...|.+++|+|++.++++++.+     .+++|
T Consensus       172 ~~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~  250 (365)
T 4h5i_A          172 EIETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI  250 (365)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred             EeCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence            765  4578899999998887776 5566777777766554  345688889999999999999998755     47788


Q ss_pred             ECCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EE-cccCCCeEEEEEeCCCCEEEEE
Q 003842          706 TVGSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL-TAHEGLIAALAVSTETGYVASA  782 (792)
Q Consensus       706 Dl~s~~~-~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~-~~h~~~V~sl~fspdg~~LaSg  782 (792)
                      ++..... ......+..|...|++++|+|++++|++|+.|+.|+|||+.+++++ .+ .+|...|++|+|+|||++||+|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~  330 (365)
T 4h5i_A          251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV  330 (365)
T ss_dssp             EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred             ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence            8865432 1234567788899999999999999999999999999999999987 43 6899999999999999999999


Q ss_pred             eCCCcEEEeC
Q 003842          783 SHDKFVKLWK  792 (792)
Q Consensus       783 s~DG~I~IWd  792 (792)
                      +.|++|+|||
T Consensus       331 S~D~tvrvw~  340 (365)
T 4h5i_A          331 SAANTIHIIK  340 (365)
T ss_dssp             ETTSEEEEEE
T ss_pred             eCCCeEEEEE
Confidence            9999999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8e-34  Score=316.33  Aligned_cols=272  Identities=15%  Similarity=0.161  Sum_probs=232.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF  593 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~  593 (792)
                      .+++++|+|+|++|++|+.||.|++||+.+++....+..| ..+....|++++++|++|+.||.|+|||+.+ +.....+
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~  135 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF-NLQREID  135 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS-CEEEEET
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC-cceeeec
Confidence            3457999999999999999999999999988877777766 5556668899999999999999999999986 6777777


Q ss_pred             cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003842          594 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA  670 (792)
Q Consensus       594 ~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~  670 (792)
                      .+|...|++++|+|++. +|++++.|+.|++||+++++.+..+.   ..+.+++|+|++..+++++.|+.|++||+++++
T Consensus       136 ~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             TSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             ccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence            89999999999999976 66699999999999999998887765   457889999999999999999999999999999


Q ss_pred             EEEEecC---CCCCeEE---------------------EEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe-ecCCC
Q 003842          671 CRLSLQG---HTKPIDS---------------------VCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL-SCNGN  724 (792)
Q Consensus       671 ~~~~l~~---h~~~V~s---------------------v~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~-~~~~~  724 (792)
                      .+..+..   +...|.+                     ++|+|++++|++++.| .|++||++++   ..+..+ ..+..
T Consensus       215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~  291 (420)
T 3vl1_A          215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTC  291 (420)
T ss_dssp             EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSS
T ss_pred             eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCC
Confidence            9988875   3344444                     4557899999999999 9999999876   344443 45778


Q ss_pred             ceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCcE--EEEcc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          725 KFHSCVFHPTYP-SLLVIGCYQSLELWNMSENKT--MTLTA-HEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       725 ~i~si~fspdg~-~L~sgs~dg~I~IwDl~~~~~--~~~~~-h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .+.+++|+|++. +|++++.||.|++||+.+++.  ..+.. |...|+++.| +++++|++++.||.|+|||
T Consensus       292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~  362 (420)
T 3vl1_A          292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI  362 (420)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred             CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence            899999999999 999999999999999998754  35554 7778888865 5788999999999999996

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=5.7e-33  Score=312.88  Aligned_cols=270  Identities=23%  Similarity=0.467  Sum_probs=239.8

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      .+....+|...|+|++|  ++++|++|+.||.|++||+.+++.+..+.+|...|++++|  ++++|++|+.||.|+|||+
T Consensus       125 ~~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          125 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             EEecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence            33445577888999988  7889999999999999999999999999999999999999  7889999999999999999


Q ss_pred             CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE---EEee---CCeeEEEEecCCCEEEEEEc
Q 003842          584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVFK---GGTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~---~~~~---~~~~~v~~sp~~~~lla~s~  657 (792)
                      .+ +..+..+.+|...|.+++|+++   ++++|+.||.|++||++++...   ..+.   ..+.++.|  ++..+++++.
T Consensus       201 ~~-~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~  274 (435)
T 1p22_A          201 NT-GEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG  274 (435)
T ss_dssp             SS-CCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred             CC-CcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence            98 6788899999999999999743   7789999999999999987654   3333   34555666  7789999999


Q ss_pred             CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003842          658 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP  736 (792)
Q Consensus       658 dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~  736 (792)
                      |+.|++||+++++.+..+.+|...|.+++|  ++.+|++++.| .|++||++++   .++..+..|...|.+++|  ++.
T Consensus       275 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~--~~~  347 (435)
T 1p22_A          275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNK  347 (435)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEC--CSS
T ss_pred             CCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC---CEEEEEeCCcCcEEEEEe--cCC
Confidence            999999999999999999999999999999  47899999998 9999999876   788888999999999999  788


Q ss_pred             EEEEEEcCCeEEEEECCCCc---------EE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          737 SLLVIGCYQSLELWNMSENK---------TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       737 ~L~sgs~dg~I~IwDl~~~~---------~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +|++++.||.|++||+.++.         .+ .+.+|.+.|.+++|  ++.+|++|+.||.|+|||
T Consensus       348 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd  411 (435)
T 1p22_A          348 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  411 (435)
T ss_dssp             EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence            99999999999999997654         44 78899999999999  788999999999999997

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.3e-32  Score=292.47  Aligned_cols=282  Identities=18%  Similarity=0.273  Sum_probs=238.5

Q ss_pred             cceEEEEeC-CCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003842          430 KPLMMFGTD-GAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA  505 (792)
Q Consensus       430 k~~l~~s~D-g~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~  505 (792)
                      ...+.|+|+ +.++++++.+   +|||+.+.+..                                         .....
T Consensus        41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~-----------------------------------------~~~~~   79 (340)
T 4aow_A           41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETN-----------------------------------------YGIPQ   79 (340)
T ss_dssp             EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC-----------------------------------------SEEEE
T ss_pred             EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc-----------------------------------------cceee
Confidence            446788887 5677765443   88987654321                                         11245


Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      ..+++|...|.+++|+|+|++|++|+.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+..
T Consensus        80 ~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~  159 (340)
T 4aow_A           80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG  159 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCceeEEecccCCCeEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeE
Q 003842          586 PGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVV  661 (792)
Q Consensus       586 ~~~~i~~~~~h~~~V~sl~fspd~~-~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I  661 (792)
                      .......+.+|...|.+++|++++. .++++++.|+.|++||+++++++..+.   ..+.+++|+|++..+++++.|+.|
T Consensus       160 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i  239 (340)
T 4aow_A          160 VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQA  239 (340)
T ss_dssp             CEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             CceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeE
Confidence            5555666778999999999998754 467799999999999999999888775   457889999999999999999999


Q ss_pred             EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEE---------EeecCCCceEEEEEe
Q 003842          662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH---------ELSCNGNKFHSCVFH  732 (792)
Q Consensus       662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~---------~~~~~~~~i~si~fs  732 (792)
                      ++||+++.+.+..+..+ ..|.+++|+|++.+++++.++.|++||++++   ..+.         ....|...|.+++|+
T Consensus       240 ~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~~s  315 (340)
T 4aow_A          240 MLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGK---IIVDELKQEVISTSSKAEPPQCTSLAWS  315 (340)
T ss_dssp             EEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTT---EEEEEECCC-------CCCCCEEEEEEC
T ss_pred             EEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCC---eEEEeccccceeeeccCCCCCEEEEEEC
Confidence            99999999999888754 6799999999998887776669999999865   3332         234577889999999


Q ss_pred             CCCCEEEEEEcCCeEEEEECCCCc
Q 003842          733 PTYPSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       733 pdg~~L~sgs~dg~I~IwDl~~~~  756 (792)
                      |++++|++|+.||.|+|||+.+|+
T Consensus       316 ~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          316 ADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             TTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCcC
Confidence            999999999999999999998875

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.1e-32  Score=321.86  Aligned_cols=292  Identities=18%  Similarity=0.296  Sum_probs=254.9

Q ss_pred             CCCcceeccCCc-ceeeeeeeecCCCC-eEEEEEcC--CCCEEEEEeCCCeEEEEECCCC--------ceeEEeccCCCC
Q 003842          489 AGGRGMDVSQGF-SFKEANSVRASTSK-VICCHFSS--DGKLLATGGHDKKAVLWHTDTL--------KSKTNLEEHSSL  556 (792)
Q Consensus       489 ~~~~~~d~~~~~-~~~~~~~l~~H~~~-V~~lafsp--dg~~Lasgs~Dg~I~vWdl~t~--------~~~~~l~~h~~~  556 (792)
                      ..+.+|++..+. ..+....+.+|.+. |++++|+|  ++++||+|+.||.|+|||+.++        +.+..+..|...
T Consensus        39 ~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~  118 (615)
T 1pgu_A           39 KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP  118 (615)
T ss_dssp             TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSC
T ss_pred             CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccccc
Confidence            356677776541 22577889999999 99999999  9999999999999999999754        677788899999


Q ss_pred             EEEEEECCCCCeEEEEeCC----CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 003842          557 ITDVRFSPSMPRLATSSFD----KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC  632 (792)
Q Consensus       557 V~~i~fspdg~~Lasgs~D----g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~  632 (792)
                      |.+++|+|++++|++++.+    +.|++||.   +..+..+.+|...|.+++|+|++..++++++.|+.|++||+.++++
T Consensus       119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~  195 (615)
T 1pgu_A          119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDS---GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF  195 (615)
T ss_dssp             EEEEEECTTSSEEEEEECCSSCSEEEEETTT---CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE
T ss_pred             EEEEEEeCCCCEEEEeccCCCCccEEEEEEC---CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce
Confidence            9999999999999999988    68888883   4678889999999999999999887888999999999999999998


Q ss_pred             EEEeeC------CeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEe-c---CCCCCeEEEEEcCCCCEEEEEeCC-
Q 003842          633 TRVFKG------GTAQMRFQPH-LGRYLAAAAENVVSILDAETQACRLSL-Q---GHTKPIDSVCWDPSGELLASVSED-  700 (792)
Q Consensus       633 ~~~~~~------~~~~v~~sp~-~~~lla~s~dg~I~i~D~~t~~~~~~l-~---~h~~~V~sv~~spdg~~Las~s~d-  700 (792)
                      +..+..      .+.+++|+|+ +..+++++.|+.|++||+++++.+..+ .   .|...|.+++|+ ++.+|++++.| 
T Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~  274 (615)
T 1pgu_A          196 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA  274 (615)
T ss_dssp             EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred             eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC
Confidence            887753      5678999999 999999999999999999999999998 6   899999999999 99999999998 


Q ss_pred             eEEEEECCCCCCcceEEEeecC----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCC
Q 003842          701 SVRVWTVGSGSEGECVHELSCN----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE  775 (792)
Q Consensus       701 ~I~IwDl~s~~~~~~i~~~~~~----~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspd  775 (792)
                      .|++||++++   ..+..+..+    ...+.++.|. ++.+|++++.++.|++||+.+++.+ .+.+|...|++++| |+
T Consensus       275 ~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~  349 (615)
T 1pgu_A          275 TIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP  349 (615)
T ss_dssp             EEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred             cEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence            9999999876   666666665    3567788886 8999999999999999999987766 67788888999888 77


Q ss_pred             CCEEEEEeCCCcEEEeC
Q 003842          776 TGYVASASHDKFVKLWK  792 (792)
Q Consensus       776 g~~LaSgs~DG~I~IWd  792 (792)
                         |++++.||.|++||
T Consensus       350 ---l~~~~~dg~i~~w~  363 (615)
T 1pgu_A          350 ---LISGSYDGRIMEWS  363 (615)
T ss_dssp             ---TEEEETTSCEEETT
T ss_pred             ---cEEECCCCeEEEEE
Confidence               77777888888875

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=7.8e-32  Score=304.16  Aligned_cols=273  Identities=26%  Similarity=0.502  Sum_probs=240.8

Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      ++....+.+|.+.|.+ +++++|++|++|+.||.|+|||+.+++.+..+.+|...|++++|+  +.+|++|+.||.|++|
T Consensus       108 ~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw  184 (445)
T 2ovr_B          108 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW  184 (445)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred             cceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence            3455678999987643 245568899999999999999999999999999999999999997  5699999999999999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcC
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~d  658 (792)
                      |+.+ +..+..+.+|...|.+++|++   .++++|+.||.|++||+++++++..+..   .+.++.+  ++..+++++.|
T Consensus       185 d~~~-~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d  258 (445)
T 2ovr_B          185 NAET-GECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYD  258 (445)
T ss_dssp             ETTT-TEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETT
T ss_pred             ECCc-CcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCC
Confidence            9987 678889999999999999974   3577999999999999999998887764   4555666  78899999999


Q ss_pred             CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003842          659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~  737 (792)
                      +.|++||+++++++..+.+|...|.+++|  ++.+|++++.| .|++||++++   .++..+..|...+.++.++  +++
T Consensus       259 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~  331 (445)
T 2ovr_B          259 FMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DNI  331 (445)
T ss_dssp             SCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TTE
T ss_pred             CEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEEe--CCE
Confidence            99999999999999999999999999999  78999999998 9999999876   6788888888888888774  669


Q ss_pred             EEEEEcCCeEEEEECCCCcEE-EEcc---cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          738 LLVIGCYQSLELWNMSENKTM-TLTA---HEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       738 L~sgs~dg~I~IwDl~~~~~~-~~~~---h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |++++.||.|++||+.+++.+ .+..   |...|++++|+  +++|++|+.||.|+|||
T Consensus       332 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd  388 (445)
T 2ovr_B          332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD  388 (445)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence            999999999999999998877 4544   88899999995  67999999999999996

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-32  Score=300.01  Aligned_cols=252  Identities=20%  Similarity=0.310  Sum_probs=215.3

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeEEeccCCCCEEEEEECCC--CCeEEEEeCCCcEE
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVR  579 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~--t~~~~~~l~~h~~~V~~i~fspd--g~~Lasgs~Dg~V~  579 (792)
                      .+..+.+|.+.|++++|+|++++||+|+.||.|+|||+.  +++.+..+.+|...|++++|+++  +.+|++++.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            456789999999999999999999999999999999998  66778889999999999999987  89999999999999


Q ss_pred             EEeCCCCC-ceeEEecccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEc
Q 003842          580 VWDADNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       580 IWdl~s~~-~~i~~~~~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~  657 (792)
                      |||+.+.. ..+..+..|...|.+++|+|+. ..+|++++.|+.|++||++.+....                       
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-----------------------  139 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS-----------------------  139 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC-----------------------
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee-----------------------
Confidence            99999732 2677788899999999999983 3466689999999999988653211                       


Q ss_pred             CCeEEEEECCCCeEEEEecCCCCCeEEEEEcC-------------CCCEEEEEeCC-eEEEEECCCCCCc-ceEEEeecC
Q 003842          658 ENVVSILDAETQACRLSLQGHTKPIDSVCWDP-------------SGELLASVSED-SVRVWTVGSGSEG-ECVHELSCN  722 (792)
Q Consensus       658 dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp-------------dg~~Las~s~d-~I~IwDl~s~~~~-~~i~~~~~~  722 (792)
                                    ...+..|...|.+++|+|             ++.+|++++.| .|++||++++... ..+..+..|
T Consensus       140 --------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h  205 (379)
T 3jrp_A          140 --------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  205 (379)
T ss_dssp             --------------EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             --------------eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc
Confidence                          122345888899999999             69999999999 9999999876432 456678889


Q ss_pred             CCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCCc---E-EE--EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          723 GNKFHSCVFHPT---YPSLLVIGCYQSLELWNMSENK---T-MT--LTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       723 ~~~i~si~fspd---g~~L~sgs~dg~I~IwDl~~~~---~-~~--~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ...|.+++|+|+   +.+|++++.||.|+|||+.++.   . ..  ...|...|++++|+|++++|++++.||.|+|||
T Consensus       206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred             cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence            999999999999   8999999999999999999874   2 22  234889999999999999999999999999996

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-31  Score=298.34  Aligned_cols=243  Identities=15%  Similarity=0.278  Sum_probs=214.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003842          511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL  590 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i  590 (792)
                      |...|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|  ++.+|++++.||.|++||++.....+
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~  210 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQI  210 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCccee
Confidence            7888999999999999999999999999999999999999999999999999  56799999999999999999767888


Q ss_pred             EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEE---cCCeEEEE
Q 003842          591 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAA---AENVVSIL  664 (792)
Q Consensus       591 ~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s---~dg~I~i~  664 (792)
                      ..+.+|...|.+++|+|++. +|++|+.|+.|++||+++++.+..+.   ..+.+++|+|++..+++++   .|+.|++|
T Consensus       211 ~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~  289 (401)
T 4aez_A          211 GTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW  289 (401)
T ss_dssp             EEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred             eEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence            89999999999999999865 66699999999999999988887664   4678899999887777655   49999999


Q ss_pred             ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe--CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003842          665 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI  741 (792)
Q Consensus       665 D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s--~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sg  741 (792)
                      |+++++.+..+. +...|.+++|+|++++|++++  .| .|++||+.++. ......+..|...|.+++|+|++.+|+++
T Consensus       290 d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~~~~~~~~h~~~v~~~~~s~dg~~l~s~  367 (401)
T 4aez_A          290 NAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-LTKQVDIPAHDTRVLYSALSPDGRILSTA  367 (401)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-EEEEEEEECCSSCCCEEEECTTSSEEEEE
T ss_pred             ECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-ceeEEEecCCCCCEEEEEECCCCCEEEEE
Confidence            999999988886 667899999999999999854  56 99999998742 23445577899999999999999999999


Q ss_pred             EcCCeEEEEECCCCcEE
Q 003842          742 GCYQSLELWNMSENKTM  758 (792)
Q Consensus       742 s~dg~I~IwDl~~~~~~  758 (792)
                      +.||.|++||+.+++.+
T Consensus       368 ~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          368 ASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             CTTSEEEEEECCC----
T ss_pred             eCCCcEEEEECCCCccc
Confidence            99999999999998866

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.1e-32  Score=291.15  Aligned_cols=246  Identities=20%  Similarity=0.370  Sum_probs=209.5

Q ss_pred             eEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-CceeEEecccCCCeEEEEEcCC-CCeEEEEEeCCCcEEE
Q 003842          547 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP-GYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRY  624 (792)
Q Consensus       547 ~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~-~~~i~~~~~h~~~V~sl~fspd-~~~ll~sgs~Dg~I~i  624 (792)
                      +..+.+|...|++++|++++++||+|+.|++|+|||+... ...+..+.+|...|++++|+++ ...+|++|+.|++|++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            3457789999999999999999999999999999999752 3567889999999999999864 2457889999999999


Q ss_pred             EEcCCCe--eEEEe---eCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCCe--EEEEecCCCCCeEEEEEcCC-----
Q 003842          625 WSINNGS--CTRVF---KGGTAQMRFQPH--LGRYLAAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPS-----  690 (792)
Q Consensus       625 wdl~~~~--~~~~~---~~~~~~v~~sp~--~~~lla~s~dg~I~i~D~~t~~--~~~~l~~h~~~V~sv~~spd-----  690 (792)
                      ||+++++  .+..+   ...+.+++|+|+  +..+++++.|+.|++||+++..  ....+.+|...|.+++|+|+     
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence            9999874  33333   356888999997  7899999999999999998763  24567789999999999997     


Q ss_pred             --------CCEEEEEeCC-eEEEEECCCCCC-cceEEEeecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCc-
Q 003842          691 --------GELLASVSED-SVRVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTY---PSLLVIGCYQSLELWNMSENK-  756 (792)
Q Consensus       691 --------g~~Las~s~d-~I~IwDl~s~~~-~~~i~~~~~~~~~i~si~fspdg---~~L~sgs~dg~I~IwDl~~~~-  756 (792)
                              +++|++++.| .|+|||++++.. ...+..+.+|...|.+++|+|++   .+|++++.|++|+|||+.+.. 
T Consensus       162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~  241 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG  241 (297)
T ss_dssp             --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred             ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence                    5799999999 999999987542 23567788999999999999985   899999999999999998743 


Q ss_pred             --E-EEE--cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          757 --T-MTL--TAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       757 --~-~~~--~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                        . ..+  ..|...|.+++|+|++++||+++.||.|+||+
T Consensus       242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~  282 (297)
T 2pm7_B          242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (297)
T ss_dssp             CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence              1 223  46888999999999999999999999999995

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1e-31  Score=321.38  Aligned_cols=246  Identities=20%  Similarity=0.324  Sum_probs=213.2

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      ....+.+|...|.|++|+++|++|++|+.||.|+|||+.++..+..+.+|...|++++|+|++++|++|+.|++|+|||+
T Consensus       422 ~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~  501 (694)
T 3dm0_A          422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT  501 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             ccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCceeEEe---cccCCCeEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEE
Q 003842          584 DNPGYSLRTF---MGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA  656 (792)
Q Consensus       584 ~s~~~~i~~~---~~h~~~V~sl~fspd~~-~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s  656 (792)
                      .. .......   .+|...|.+++|+|++. .++++++.|+.|++||++++++...+.+   .+.+++|+|++..+++++
T Consensus       502 ~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~  580 (694)
T 3dm0_A          502 LG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG  580 (694)
T ss_dssp             TS-CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CC-CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence            65 2222222   46889999999999863 4788999999999999999988877654   578899999999999999


Q ss_pred             cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecC--------------
Q 003842          657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCN--------------  722 (792)
Q Consensus       657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~--------------  722 (792)
                      .|+.|++||+++++.+..+.. ...|.+++|+|++.+|++++++.|+|||++++   ..+..+..+              
T Consensus       581 ~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~  656 (694)
T 3dm0_A          581 KDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESK---SIVEDLKVDLKAEAEKADNSGPA  656 (694)
T ss_dssp             TTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTT---EEEEEECCCCC------------
T ss_pred             CCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCC---CChhhhccccccccccccccccc
Confidence            999999999999998888764 56799999999999999988889999999876   444433321              


Q ss_pred             -----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003842          723 -----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       723 -----~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~  754 (792)
                           ...+.+++|+|++++|++|+.||.|+|||+..
T Consensus       657 ~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          657 ATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             ----CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence                 12368899999999999999999999999853

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=297.45  Aligned_cols=247  Identities=16%  Similarity=0.316  Sum_probs=212.2

Q ss_pred             cCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCCCc-eeEEeccCCCCEEEEEE------CCCCCeEEEEeCCCcEE
Q 003842          510 ASTSKVICCHFSSD---GKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRF------SPSMPRLATSSFDKTVR  579 (792)
Q Consensus       510 ~H~~~V~~lafspd---g~~Lasgs~Dg~I~vWdl~t~~-~~~~l~~h~~~V~~i~f------spdg~~Lasgs~Dg~V~  579 (792)
                      +|...|.+++|+|+   +++|++|+.||.|++||+.+++ .+..+.+|...|.+++|      ++++++|++++.||.|+
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~  142 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK  142 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence            68889999999998   7999999999999999999988 88999999999999954      78999999999999999


Q ss_pred             EEeCCCCCceeEEecccCC----CeEEEE----EcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--eCCeeEEEEec--
Q 003842          580 VWDADNPGYSLRTFMGHSA----SVMSLD----FHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQP--  647 (792)
Q Consensus       580 IWdl~s~~~~i~~~~~h~~----~V~sl~----fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp--  647 (792)
                      +||+++....+..+..|.+    .|.+++    |++++. ++++++.||.|++||+++++.....  ...+.+++|+|  
T Consensus       143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~  221 (357)
T 3i2n_A          143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD  221 (357)
T ss_dssp             EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSS
T ss_pred             EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCC
Confidence            9999985557777766555    899998    667765 6668999999999999999876543  46788999999  


Q ss_pred             -CCCEEEEEEcCCeEEEEECCCCeEEEE-----ecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCc------
Q 003842          648 -HLGRYLAAAAENVVSILDAETQACRLS-----LQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEG------  713 (792)
Q Consensus       648 -~~~~lla~s~dg~I~i~D~~t~~~~~~-----l~~h~~~V~sv~~spdg~-~Las~s~d-~I~IwDl~s~~~~------  713 (792)
                       ++..+++++.|+.|++||+++++.+..     +.+|...|++++|+|++. +|++++.| .|++||++.+...      
T Consensus       222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  301 (357)
T 3i2n_A          222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE  301 (357)
T ss_dssp             SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred             CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence             899999999999999999987654433     348999999999999998 89999998 9999999865433      


Q ss_pred             ----------ceEEEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCcE
Q 003842          714 ----------ECVHELSCNGNKFHSCVFHPTYPSLL-VIGCYQSLELWNMSENKT  757 (792)
Q Consensus       714 ----------~~i~~~~~~~~~i~si~fspdg~~L~-sgs~dg~I~IwDl~~~~~  757 (792)
                                ..+..+..|...|.+++|+|++++|+ +++.|+.|+|||+.+.+.
T Consensus       302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence                      46788889999999999999999998 799999999999987654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.1e-32  Score=299.84  Aligned_cols=248  Identities=17%  Similarity=0.197  Sum_probs=219.2

Q ss_pred             eeeeeeecCCCCeEEEEEcCC----C---CEEEEEeCCCeEEEEECCCCce-----eEEeccC-----CCCEEEEEEC--
Q 003842          503 KEANSVRASTSKVICCHFSSD----G---KLLATGGHDKKAVLWHTDTLKS-----KTNLEEH-----SSLITDVRFS--  563 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspd----g---~~Lasgs~Dg~I~vWdl~t~~~-----~~~l~~h-----~~~V~~i~fs--  563 (792)
                      ..+..+.+|...|++++|+++    +   ++|++++.||.|++||+.+++.     +..+..|     ...|.+++|+  
T Consensus        53 ~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  132 (397)
T 1sq9_A           53 DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS  132 (397)
T ss_dssp             GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECC
T ss_pred             CcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeec
Confidence            345667799999999999999    9   9999999999999999998887     8888888     5999999999  


Q ss_pred             --CCCCe-EEEEeCCCcEEEEeCCC------CCceeE-----Ee-------cccCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003842          564 --PSMPR-LATSSFDKTVRVWDADN------PGYSLR-----TF-------MGHSASVMSLDFHPNKDDLICSCDGDGEI  622 (792)
Q Consensus       564 --pdg~~-Lasgs~Dg~V~IWdl~s------~~~~i~-----~~-------~~h~~~V~sl~fspd~~~ll~sgs~Dg~I  622 (792)
                        |++++ |++++.||.|++||+.+      .. .+.     .+       ..|...|.+++|+|++  +|++++.||.|
T Consensus       133 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i  209 (397)
T 1sq9_A          133 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSL-TLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTV  209 (397)
T ss_dssp             C----CEEEEEEETTSCEEEEEEESSSSHHHHT-TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEE
T ss_pred             cCCCCceEEEEEeCCCcEEEEeCCccccccccc-eeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcE
Confidence              99999 99999999999999986      32 222     45       4588999999999997  77799999999


Q ss_pred             EEEEcCCCeeEEEeeC---------CeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEecC-------------
Q 003842          623 RYWSINNGSCTRVFKG---------GTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACRLSLQG-------------  677 (792)
Q Consensus       623 ~iwdl~~~~~~~~~~~---------~~~~v~~sp~~~~lla~s~d---g~I~i~D~~t~~~~~~l~~-------------  677 (792)
                      ++||+++++.+..+..         .+.+++|+|++..+++++.|   +.|++||+++++.+..+..             
T Consensus       210 ~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (397)
T 1sq9_A          210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA  289 (397)
T ss_dssp             EEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred             EEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccc
Confidence            9999999998877654         47789999999999999999   9999999999999999998             


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee------cC---------------CCceEEEEEeCCC
Q 003842          678 HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS------CN---------------GNKFHSCVFHPTY  735 (792)
Q Consensus       678 h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~------~~---------------~~~i~si~fspdg  735 (792)
                      |...|.+++|+|++++|++++.| .|+|||++++   +++..+.      .|               ...|.+++|+|++
T Consensus       290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence            99999999999999999999998 9999999876   6777777      66               8899999999998


Q ss_pred             ----------CEEEEEEcCCeEEEEECCCCc
Q 003842          736 ----------PSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       736 ----------~~L~sgs~dg~I~IwDl~~~~  756 (792)
                                ++|++++.||.|+|||+.+++
T Consensus       367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          367 WRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                      799999999999999998763

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-31  Score=287.98  Aligned_cols=275  Identities=13%  Similarity=0.219  Sum_probs=238.9

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|++||.++++++.+   +|||+.+++                                              .+.
T Consensus        35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----------------------------------------------~~~   68 (369)
T 3zwl_B           35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGE----------------------------------------------RLG   68 (369)
T ss_dssp             EEEEEECTTSCEEEEEESSSCEEEEETTTCC----------------------------------------------EEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEeCCCch----------------------------------------------hhh
Confidence            4568899999988875433   778766543                                              344


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC-----CcEEEE
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVW  581 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D-----g~V~IW  581 (792)
                      .+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+. +...|.+++|+|++++|++++.+     |.|++|
T Consensus        69 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~  147 (369)
T 3zwl_B           69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY  147 (369)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred             hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence            567899999999999999999999999999999999999998888 88999999999999999999999     999999


Q ss_pred             eCCCCCc----------eeEEecccCC--CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEEee---CCeeEEEE
Q 003842          582 DADNPGY----------SLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFK---GGTAQMRF  645 (792)
Q Consensus       582 dl~s~~~----------~i~~~~~h~~--~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~~~---~~~~~v~~  645 (792)
                      |+.....          .+..+..|..  .|.+++|+|++. +|++++.||.|++||+++ ...+..+.   ..+.+++|
T Consensus       148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  226 (369)
T 3zwl_B          148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQF  226 (369)
T ss_dssp             EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEE
T ss_pred             EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEE
Confidence            9986432          3445556666  999999999976 556899999999999998 67776665   46788999


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---------------eEEEEECCCC
Q 003842          646 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---------------SVRVWTVGSG  710 (792)
Q Consensus       646 sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---------------~I~IwDl~s~  710 (792)
                      +|++..+++++.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.+               .|++||+.++
T Consensus       227 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  305 (369)
T 3zwl_B          227 SPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE  305 (369)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred             CCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence            9999999999999999999999999988887 77889999999999999998865               5899999776


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003842          711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       711 ~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~  756 (792)
                         ..+..+..|...|.+++|+|++++|++++.||.|+||++.++.
T Consensus       306 ---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          306 ---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             ---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             ---cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence               6778888999999999999999999999999999999998654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.5e-32  Score=296.13  Aligned_cols=282  Identities=17%  Similarity=0.244  Sum_probs=233.5

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|++||.++++++.+   +|||+.+++                                            ++.+.
T Consensus        11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~--------------------------------------------~~~~~   46 (372)
T 1k8k_C           11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--------------------------------------------WVQVH   46 (372)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTE--------------------------------------------EEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEeCCCCc--------------------------------------------EEeee
Confidence            4578999999998876444   677765432                                            23556


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE--eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~--l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      .+.+|...|.+++|+|++++|++++.||.|++||+++++....  +..|...|++++|+|++++|++++.||.|++||++
T Consensus        47 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~  126 (372)
T 1k8k_C           47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE  126 (372)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred             eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEec
Confidence            7789999999999999999999999999999999998875544  46799999999999999999999999999999998


Q ss_pred             CCCc---eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC------------------CCeeEEEee---CCe
Q 003842          585 NPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN------------------NGSCTRVFK---GGT  640 (792)
Q Consensus       585 s~~~---~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~------------------~~~~~~~~~---~~~  640 (792)
                      ....   .......|...|.+++|+|++. +|++++.||.|++||++                  .++++..+.   ..+
T Consensus       127 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  205 (372)
T 1k8k_C          127 QENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV  205 (372)
T ss_dssp             TTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred             CCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE
Confidence            7442   2334467899999999999876 56689999999999954                  567777664   457


Q ss_pred             eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCC--CC-------
Q 003842          641 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS--GS-------  711 (792)
Q Consensus       641 ~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s--~~-------  711 (792)
                      .+++|+|++..+++++.|+.|++||+++++.+..+..|...|.+++|+|++.+|+++.++.|++||+..  +.       
T Consensus       206 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~  285 (372)
T 1k8k_C          206 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRL  285 (372)
T ss_dssp             EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCC
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeecc
Confidence            889999999999999999999999999999999999999999999999999999988444999999987  21       


Q ss_pred             ----------------------CcceE------EEe-ecCCCceEEEEEe-CCC---CEEEEEEcCCeEEEEECCCCc
Q 003842          712 ----------------------EGECV------HEL-SCNGNKFHSCVFH-PTY---PSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       712 ----------------------~~~~i------~~~-~~~~~~i~si~fs-pdg---~~L~sgs~dg~I~IwDl~~~~  756 (792)
                                            .....      ..+ .+|...|.+++|+ +++   .+|++++.||.|++||+.+++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          286 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             CccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence                                  00110      222 3788899999866 666   899999999999999987643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.2e-32  Score=297.15  Aligned_cols=241  Identities=18%  Similarity=0.279  Sum_probs=211.5

Q ss_pred             cCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCC
Q 003842          510 ASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       510 ~H~~~V~~lafspd----g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~  584 (792)
                      .|...|++++|+++    |++|++|+.||.|+|||+.+++.+..+.+|...|++++|+| ++.+|++++.||.|+|||++
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~  146 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ  146 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence            47788999999999    67999999999999999999999999999999999999999 89999999999999999998


Q ss_pred             CCCceeEEe---cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE--------------------------
Q 003842          585 NPGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--------------------------  635 (792)
Q Consensus       585 s~~~~i~~~---~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~--------------------------  635 (792)
                      + +..+..+   ..|...|.+++|+|++. +|++++.||.|++||+++++....                          
T Consensus       147 ~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (366)
T 3k26_A          147 T-DTLVAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF  224 (366)
T ss_dssp             T-TEEEEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred             c-CeEEEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence            7 5667776   68999999999999876 566899999999999997754322                          


Q ss_pred             -----eeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--------------EEEEecCCCCCeEEEEEcCC--CCEE
Q 003842          636 -----FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA--------------CRLSLQGHTKPIDSVCWDPS--GELL  694 (792)
Q Consensus       636 -----~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~--------------~~~~l~~h~~~V~sv~~spd--g~~L  694 (792)
                           ....+.+++|+  +..+++++.|+.|++||+++..              .+..+..|...|++++|+|+  +++|
T Consensus       225 ~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l  302 (366)
T 3k26_A          225 STRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML  302 (366)
T ss_dssp             EECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEE
T ss_pred             ccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEE
Confidence                 34567788888  6799999999999999998763              47888889999999999999  9999


Q ss_pred             EEEeCC-eEEEEECCCCCCcc-eEEEeecC--CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003842          695 ASVSED-SVRVWTVGSGSEGE-CVHELSCN--GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       695 as~s~d-~I~IwDl~s~~~~~-~i~~~~~~--~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~  754 (792)
                      ++++.| .|++||+.++.... .+..+..|  ...|.+++|+|++++|++++.||.|+|||+.+
T Consensus       303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          303 ALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            999998 99999998875433 55566766  68999999999999999999999999999853

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.9e-31  Score=283.17  Aligned_cols=291  Identities=18%  Similarity=0.304  Sum_probs=239.5

Q ss_pred             CCCCceeccCCCCCCCCCcceEEEEeCCCeeee--cCCCeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCC
Q 003842          412 TPGDVISMPALPHSGTTSKPLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDA  489 (792)
Q Consensus       412 tp~~~~~~p~~p~~~~~~k~~l~~s~Dg~~~~s--s~s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~  489 (792)
                      .|.+++.+|.+...-.  ..+|.||+++. +++  +++.+|||+.+++.+.                             
T Consensus        12 ~p~rvldap~~~~d~y--~~~l~WS~~~~-lAvg~D~tV~iWd~~tg~~~~-----------------------------   59 (318)
T 4ggc_A           12 LPDRILDAPEIRNDYY--LNLVDWSSGNV-LAVALDNSVYLWSASSGDILQ-----------------------------   59 (318)
T ss_dssp             SCSEEEECTTCCCCTT--CBCEEECTTSE-EEEEETTEEEEEETTTCCEEE-----------------------------
T ss_pred             CCCEEeeCCCCccccc--ceEEEECCCCE-EEEEeCCEEEEEECCCCCEEE-----------------------------
Confidence            4566777777653211  24789999873 433  3334889988876432                             


Q ss_pred             CCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeE
Q 003842          490 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL  569 (792)
Q Consensus       490 ~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~L  569 (792)
                                     ...+.+|...|+|++|+|++++||+|+.||+|+|||+++++.+..+.+|...+.++.+  ++.+|
T Consensus        60 ---------------~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l  122 (318)
T 4ggc_A           60 ---------------LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYIL  122 (318)
T ss_dssp             ---------------EEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEE
T ss_pred             ---------------EEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEE
Confidence                           2234578889999999999999999999999999999999999999999999887766  45699


Q ss_pred             EEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-------EeeCCeeE
Q 003842          570 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-------VFKGGTAQ  642 (792)
Q Consensus       570 asgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~-------~~~~~~~~  642 (792)
                      ++++.++.+++|+.......+..+.+|...+.++.|.+++. ++++++.|+.|++||+++++...       .....+..
T Consensus       123 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~  201 (318)
T 4ggc_A          123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA  201 (318)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEE
T ss_pred             EEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCcccccceeeecccCCceEE
Confidence            99999999999999987788889999999999999999976 56699999999999998765321       12346778


Q ss_pred             EEEecCCCEEEE---EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe--CC-eEEEEECCCCCCcceE
Q 003842          643 MRFQPHLGRYLA---AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECV  716 (792)
Q Consensus       643 v~~sp~~~~lla---~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s--~d-~I~IwDl~s~~~~~~i  716 (792)
                      +.+.+.+..++.   ++.++.|++||.+......... +...+..++|++++..+++++  .| .|+|||++++   +++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---~~~  277 (318)
T 4ggc_A          202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---AKV  277 (318)
T ss_dssp             EEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---CEE
T ss_pred             EEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---cEE
Confidence            889988776553   3457899999999988776655 667899999999999887765  55 8999999876   788


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003842          717 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       717 ~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~  756 (792)
                      ..+.+|...|++++|+|++++|++++.|++|+|||+.+..
T Consensus       278 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            8999999999999999999999999999999999997653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.9e-32  Score=301.61  Aligned_cols=277  Identities=15%  Similarity=0.242  Sum_probs=233.7

Q ss_pred             CCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCC----ceeEEeccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCC
Q 003842          513 SKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       513 ~~V~~lafspdg~~L-asgs~Dg~I~vWdl~t~----~~~~~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      ....+++++++...+ ++++.||.|+||++...    ..+..+.+|...|++++|+| ++.+|++|+.||.|+|||+.+.
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence            345568899887544 45788999999999654    34556788999999999999 8999999999999999999874


Q ss_pred             C------ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--e---CCeeEEEEecCCCEEEEE
Q 003842          587 G------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--K---GGTAQMRFQPHLGRYLAA  655 (792)
Q Consensus       587 ~------~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~---~~~~~v~~sp~~~~lla~  655 (792)
                      .      ..+..+.+|...|.+++|+|++..+|++++.||.|++||+++++++..+  .   ..+.+++|+|++..++++
T Consensus       115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  194 (402)
T 2aq5_A          115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS  194 (402)
T ss_dssp             CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred             CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence            3      5678889999999999999998778889999999999999999988877  3   457889999999999999


Q ss_pred             EcCCeEEEEECCCCeEEEEe-cCCCCC-eEEEEEcCCCCEEEEE---eCC-eEEEEECCCCCCcceEEEeecCCCceEEE
Q 003842          656 AAENVVSILDAETQACRLSL-QGHTKP-IDSVCWDPSGELLASV---SED-SVRVWTVGSGSEGECVHELSCNGNKFHSC  729 (792)
Q Consensus       656 s~dg~I~i~D~~t~~~~~~l-~~h~~~-V~sv~~spdg~~Las~---s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si  729 (792)
                      +.|+.|++||+++++.+..+ ..|... +.+++|+|++++|+++   +.| .|++||+++.........+ .+...+.++
T Consensus       195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~  273 (402)
T 2aq5_A          195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLP  273 (402)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEE
T ss_pred             ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEE
Confidence            99999999999999999988 678776 8999999999999998   567 9999999886543333322 456679999


Q ss_pred             EEeCCCCEEEEEE-cCCeEEEEECCCCc--EEEEc--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          730 VFHPTYPSLLVIG-CYQSLELWNMSENK--TMTLT--AHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       730 ~fspdg~~L~sgs-~dg~I~IwDl~~~~--~~~~~--~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +|+|++.+|++++ .|+.|++||+.+++  ...+.  .|...|.+++|+|++.++++  .|+.+++|+
T Consensus       274 ~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~  339 (402)
T 2aq5_A          274 FFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK  339 (402)
T ss_dssp             EEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred             EEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence            9999999997655 69999999999887  33333  36699999999999988764  577899995

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-31  Score=293.82  Aligned_cols=207  Identities=19%  Similarity=0.267  Sum_probs=175.5

Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADN  585 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s  585 (792)
                      .+.+|.+.|+||+|+|||++||+|+.|++|+|||+.+++++..+.+|...|++++|++++. +|++++.|++|+|||+++
T Consensus       122 ~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~  201 (344)
T 4gqb_B          122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC  201 (344)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc
Confidence            4568999999999999999999999999999999999999999999999999999999885 789999999999999997


Q ss_pred             CCceeEEec--ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003842          586 PGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI  663 (792)
Q Consensus       586 ~~~~i~~~~--~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i  663 (792)
                       +..+..+.  .+...+.+++|+|++..+|++|+.||.|++||+++++++                              
T Consensus       202 -~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~------------------------------  250 (344)
T 4gqb_B          202 -PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV------------------------------  250 (344)
T ss_dssp             -SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC------------------------------
T ss_pred             -cceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE------------------------------
Confidence             55555543  456678999999988888889998998888888765433                              


Q ss_pred             EECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEE
Q 003842          664 LDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLV  740 (792)
Q Consensus       664 ~D~~t~~~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-~L~s  740 (792)
                               ..+.+|...|++++|+|++ ++|++++.| .|+|||++++   + +..+.+|...|++++|+|+++ +|++
T Consensus       251 ---------~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~~V~~v~~sp~~~~llas  317 (344)
T 4gqb_B          251 ---------LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRDFVRDATWSPLNHSLLTT  317 (344)
T ss_dssp             ---------EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred             ---------EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCCCEEEEEEeCCCCeEEEE
Confidence                     3455688999999999998 589999999 9999999875   3 345788999999999999986 5668


Q ss_pred             EEcCCeEEEEECCCCcE
Q 003842          741 IGCYQSLELWNMSENKT  757 (792)
Q Consensus       741 gs~dg~I~IwDl~~~~~  757 (792)
                      ++.|++|++|++.+...
T Consensus       318 ~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          318 VGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EETTSCEEEEECCC---
T ss_pred             EcCCCeEEEEECCCCCC
Confidence            89999999999987543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-31  Score=280.07  Aligned_cols=242  Identities=17%  Similarity=0.268  Sum_probs=211.2

Q ss_pred             eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~---~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      ...+..|...|.+++|+|++++|++|+.||.|++|++...   +.+..+..|...|.+++|  ++++|++++.||.|++|
T Consensus        52 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~  129 (313)
T 3odt_A           52 GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVW  129 (313)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred             EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEE
Confidence            3456688999999999999999999999999999998754   567788899999999999  67799999999999999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----eCCeeEEEEecCCCEEEEEEc
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~sp~~~~lla~s~  657 (792)
                      |   ....+..+..|...|.+++|.+....++++++.||.|++||.  .+....+    ...+.+++|++++. +++++.
T Consensus       130 d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~  203 (313)
T 3odt_A          130 K---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN  203 (313)
T ss_dssp             E---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEET
T ss_pred             c---CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccC
Confidence            9   256788888999999999999844557779999999999994  4444444    34678899999977 999999


Q ss_pred             CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003842          658 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP  736 (792)
Q Consensus       658 dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~  736 (792)
                      |+.|++||+++++.+..+..|...|++++|+|++ .|++++.| .|++||++++   +.+..+..+...+.+++|+|++.
T Consensus       204 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~  279 (313)
T 3odt_A          204 DGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG---SLKQVITLPAISIWSVDCMSNGD  279 (313)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC---CEEEEEECSSSCEEEEEECTTSC
T ss_pred             CCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCC---ceeEEEeccCceEEEEEEccCCC
Confidence            9999999999999999999999999999999999 47777777 9999999876   67788888889999999999998


Q ss_pred             EEEEEEcCCeEEEEECCCCcEEE
Q 003842          737 SLLVIGCYQSLELWNMSENKTMT  759 (792)
Q Consensus       737 ~L~sgs~dg~I~IwDl~~~~~~~  759 (792)
                       +++++.||.|++||+.+++...
T Consensus       280 -~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          280 -IIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             -EEEEETTSCEEEEESCGGGCCC
T ss_pred             -EEEEeCCCcEEEEeCCCCceee
Confidence             6779999999999999887653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.5e-31  Score=295.04  Aligned_cols=272  Identities=16%  Similarity=0.180  Sum_probs=219.0

Q ss_pred             cceEEEEeCC-CeeeecCC---CeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003842          430 KPLMMFGTDG-AGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA  505 (792)
Q Consensus       430 k~~l~~s~Dg-~~~~ss~s---~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~  505 (792)
                      ...+.|++++ .++++++.   .+|||+.+++..                                            ..
T Consensus        76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------------------------------------~~  111 (383)
T 3ei3_B           76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT--------------------------------------------SF  111 (383)
T ss_dssp             EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE--------------------------------------------EE
T ss_pred             EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc--------------------------------------------ee
Confidence            4468899998 77777543   388988765321                                            11


Q ss_pred             eeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEecc---CCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          506 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEE---HSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       506 ~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~---h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      ..+.+|...|.+++|+| ++++|++++.|+.|++||+.+ ..+..+..   |...|.+++|+|++++|++++.|+.|++|
T Consensus       112 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  190 (383)
T 3ei3_B          112 IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL  190 (383)
T ss_dssp             ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEE
Confidence            22347999999999999 789999999999999999996 55555544   44889999999999999999999999999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC----CeeEEEe--eCCeeEEEEec-CCCEEEE
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----GSCTRVF--KGGTAQMRFQP-HLGRYLA  654 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~----~~~~~~~--~~~~~~v~~sp-~~~~lla  654 (792)
                      |++  +..+..+.+|...|.+++|+|++..+|++|+.|+.|++||+++    +.++..+  ...+.+++|+| ++..+++
T Consensus       191 d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~  268 (383)
T 3ei3_B          191 GLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLT  268 (383)
T ss_dssp             ETT--SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEE
T ss_pred             ECC--CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEE
Confidence            994  5788889999999999999999887888999999999999998    5565544  45688899999 9999999


Q ss_pred             EEcCCeEEEEECCCCeEEEEecCCC-------CC----------eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceE
Q 003842          655 AAAENVVSILDAETQACRLSLQGHT-------KP----------IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV  716 (792)
Q Consensus       655 ~s~dg~I~i~D~~t~~~~~~l~~h~-------~~----------V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i  716 (792)
                      ++.|+.|++||+++++.+..+..|.       ..          +..++|+|++++  +++.| .|+|||+.++   +++
T Consensus       269 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~---~~~  343 (383)
T 3ei3_B          269 TDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG---GLV  343 (383)
T ss_dssp             EESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC---CEE
T ss_pred             EcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC---cee
Confidence            9999999999999887655555432       23          334555555555  45566 9999999876   667


Q ss_pred             EEeec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003842          717 HELSC--NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       717 ~~~~~--~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~  754 (792)
                      ..+..  +...+..++|+|++++|++++ |+.|+|||+++
T Consensus       344 ~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          344 HQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             eeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            77766  456677789999999999997 89999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-32  Score=302.71  Aligned_cols=278  Identities=15%  Similarity=0.204  Sum_probs=216.5

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|+|||.++++++.+   +|||+.++.                                            ++.+.
T Consensus        14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--------------------------------------------~~~~~   49 (377)
T 3dwl_C           14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNG--------------------------------------------WKHAR   49 (377)
T ss_dssp             CSCCEECSSSSEEECCCSSSCBCEEEEETTE--------------------------------------------EEECC
T ss_pred             EEEEEECCCCCEEEEecCCCEEEEEEccCCc--------------------------------------------eEEEE
Confidence            4568899999988876444   777765432                                            12345


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~---~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      .+.+|.+.|++++|+|++++|++|+.|+.|+|||+.+++   ....+..|...|++++|+|++++|++++.|+.|++||+
T Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  129 (377)
T 3dwl_C           50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYF  129 (377)
T ss_dssp             CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC
T ss_pred             EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEE
Confidence            567899999999999999999999999999999999877   67778899999999999999999999999999999999


Q ss_pred             CCCCc--eeEEecc-cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC------------------CeeEEEe--eCCe
Q 003842          584 DNPGY--SLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN------------------GSCTRVF--KGGT  640 (792)
Q Consensus       584 ~s~~~--~i~~~~~-h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~------------------~~~~~~~--~~~~  640 (792)
                      ++...  ....+.. |...|.+++|+|++. +|++++.|+.|++||++.                  ++++..+  ...+
T Consensus       130 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  208 (377)
T 3dwl_C          130 EQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWV  208 (377)
T ss_dssp             -----CCCCEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSE
T ss_pred             CCcccceeeeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceE
Confidence            87432  4677777 999999999999875 667999999999999953                  3344433  3457


Q ss_pred             eEEEEecCCCEEEEEEcCCeEEEEECCCCeE----EEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCC----
Q 003842          641 AQMRFQPHLGRYLAAAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE----  712 (792)
Q Consensus       641 ~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~----~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~----  712 (792)
                      .+++|+|++.++++++.|+.|++||+++++.    +..+.+|...|.+++|+|++++|++++++.+.+|+......    
T Consensus       209 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~  288 (377)
T 3dwl_C          209 HAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTR  288 (377)
T ss_dssp             EEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSB
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEe
Confidence            8899999999999999999999999999876    77888999999999999999999999988666887752210    


Q ss_pred             -----------------------c---------ceEEE-------------eecCCCceEEEEEeCCC-C---EEEEEEc
Q 003842          713 -----------------------G---------ECVHE-------------LSCNGNKFHSCVFHPTY-P---SLLVIGC  743 (792)
Q Consensus       713 -----------------------~---------~~i~~-------------~~~~~~~i~si~fspdg-~---~L~sgs~  743 (792)
                                             .         ..+..             ...|...|.++++.+.. .   .|++++.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~  368 (377)
T 3dwl_C          289 DLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGT  368 (377)
T ss_dssp             CCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEET
T ss_pred             eecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecC
Confidence                                   0         00110             11278889999976644 3   6999999


Q ss_pred             CCeEEEEEC
Q 003842          744 YQSLELWNM  752 (792)
Q Consensus       744 dg~I~IwDl  752 (792)
                      ||.|+|||+
T Consensus       369 Dg~i~iWdl  377 (377)
T 3dwl_C          369 DGRVVLWTL  377 (377)
T ss_dssp             TSEEEEECC
T ss_pred             CCcEEEecC
Confidence            999999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=5.3e-31  Score=290.70  Aligned_cols=323  Identities=16%  Similarity=0.234  Sum_probs=228.0

Q ss_pred             cceEEEEe-CCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003842          430 KPLMMFGT-DGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA  505 (792)
Q Consensus       430 k~~l~~s~-Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~  505 (792)
                      ...+.|+| ++.++++++.+   +|||+.+++....+.....                                 .....
T Consensus        46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---------------------------------~~~~~   92 (408)
T 4a11_B           46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV---------------------------------CSIGR   92 (408)
T ss_dssp             EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE---------------------------------EEECT
T ss_pred             EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc---------------------------------ccccc
Confidence            45688999 99998886544   8899988764432210000                                 00001


Q ss_pred             eeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCC---CCeEEEEeCCCcEEEE
Q 003842          506 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS---MPRLATSSFDKTVRVW  581 (792)
Q Consensus       506 ~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspd---g~~Lasgs~Dg~V~IW  581 (792)
                      ....+|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+. +...+.++.|++.   +.+|++++.||.|++|
T Consensus        93 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  171 (408)
T 4a11_B           93 DHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC  171 (408)
T ss_dssp             TCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred             cccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence            11346999999999999 78899999999999999999998888776 7788999999985   4499999999999999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEE------------------eeCCeeE
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRV------------------FKGGTAQ  642 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~~~~------------------~~~~~~~  642 (792)
                      |+++ +..+..+..|...|.+++|+|++.++|++++.||.|++||++++. ++..                  ....+.+
T Consensus       172 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  250 (408)
T 4a11_B          172 DLKS-GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG  250 (408)
T ss_dssp             ESSS-SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred             eCCC-cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence            9987 677888889999999999999998888899999999999998765 2222                  2345788


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC------CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceE
Q 003842          643 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT------KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECV  716 (792)
Q Consensus       643 v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~------~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i  716 (792)
                      ++|+|++.++++++.|+.|++||+++++....+..+.      .....+.....+.+++++.++.|++||+.++   ..+
T Consensus       251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~  327 (408)
T 4a11_B          251 LCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQI  327 (408)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEE
T ss_pred             EEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cce
Confidence            9999999999999999999999999987655443321      1122233333445555555559999999876   788


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeC-CCCEEEEEeCCCcEEEeC
Q 003842          717 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK  792 (792)
Q Consensus       717 ~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fsp-dg~~LaSgs~DG~I~IWd  792 (792)
                      ..+..|...|.+++|+|++.+|++++.||.|++||+.+++.+.........  ..+.+ ....+.+++.|+.|++|+
T Consensus       328 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~  402 (408)
T 4a11_B          328 TMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWS  402 (408)
T ss_dssp             EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------
T ss_pred             eeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--cccccccceeecccCccCceeecC
Confidence            888999999999999999999999999999999999998876432222222  22333 334566777899999995

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.3e-30  Score=286.32  Aligned_cols=275  Identities=15%  Similarity=0.186  Sum_probs=216.3

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeE-EEEeCCCcEEEEe
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWD  582 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~L-asgs~Dg~V~IWd  582 (792)
                      .+..+..|.+.|+|++|+|||++||+|+.++ ++|||+++++.+.....+  .+..++|.++++.+ ++++.|++|+|||
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd   87 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWD   87 (355)
T ss_dssp             --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred             CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence            3445688999999999999999999998775 789999987766554433  57888999988877 5678889999999


Q ss_pred             CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeEEEeeCCeeEEEEecCCCEEEEE--EcCC
Q 003842          583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGGTAQMRFQPHLGRYLAA--AAEN  659 (792)
Q Consensus       583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~~~~~~v~~sp~~~~lla~--s~dg  659 (792)
                      +.+ +..+..+. +...|.+++|+++.  ++ ++ .|+.|++||+.++ +.+..+......+++++  ..++++  +.+|
T Consensus        88 ~~~-~~~~~~~~-~~~~v~~v~~~~~~--~~-~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g  159 (355)
T 3vu4_A           88 DVK-KQDVSRIK-VDAPVKDLFLSREF--IV-VS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLG  159 (355)
T ss_dssp             TTT-TEEEEEEE-CSSCEEEEEECSSE--EE-EE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTT
T ss_pred             CCC-CcEEEEEE-CCCceEEEEEcCCE--EE-EE-EcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCc
Confidence            987 66666665 67799999998762  33 33 3889999999988 66666555445566777  566664  6799


Q ss_pred             eEEEEECCCCe----------------EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-e-EEEEECCCCCCcceEEEee-
Q 003842          660 VVSILDAETQA----------------CRLSLQGHTKPIDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELS-  720 (792)
Q Consensus       660 ~I~i~D~~t~~----------------~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~-I~IwDl~s~~~~~~i~~~~-  720 (792)
                      .|++||++++.                ++..+.+|...|++++|+|+|++|++++.| + |+|||++++   .++..+. 
T Consensus       160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~~  236 (355)
T 3vu4_A          160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFRR  236 (355)
T ss_dssp             CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---CEEEEEEC
T ss_pred             EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEc
Confidence            99999999865                267889999999999999999999999999 7 999999877   6777787 


Q ss_pred             c-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---EE--------------------c-ccCCCeEEEEEeCC
Q 003842          721 C-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TL--------------------T-AHEGLIAALAVSTE  775 (792)
Q Consensus       721 ~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~---~~--------------------~-~h~~~V~sl~fspd  775 (792)
                      + |...|.+++|+|++++|++++.|+.|+|||+......   .+                    . .+......++|++|
T Consensus       237 g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d  316 (355)
T 3vu4_A          237 GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE  316 (355)
T ss_dssp             TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS
T ss_pred             CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCC
Confidence            4 8899999999999999999999999999999765311   10                    0 11223467999999


Q ss_pred             CCEEEEEeCCCcEEEeC
Q 003842          776 TGYVASASHDKFVKLWK  792 (792)
Q Consensus       776 g~~LaSgs~DG~I~IWd  792 (792)
                      +++|++++.||.+++|+
T Consensus       317 ~~~l~~~~~dg~~~~~~  333 (355)
T 3vu4_A          317 SSLVVVWPHTRMIETFK  333 (355)
T ss_dssp             SEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEE
Confidence            99999999999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.98  E-value=1.5e-31  Score=301.70  Aligned_cols=246  Identities=15%  Similarity=0.202  Sum_probs=199.1

Q ss_pred             eeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEecc--CCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          506 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       506 ~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~--h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      ..+.+|.+.|+||+|+| ++++|++|+.||+|+|||+++.........  +...+.+++|++++.+|++|+.||.|++||
T Consensus       158 ~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd  237 (435)
T 4e54_B          158 IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLN  237 (435)
T ss_dssp             ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEE
T ss_pred             EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeec
Confidence            34568999999999998 789999999999999999987655444433  345678999999999999999999999999


Q ss_pred             CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE------eeCCeeEEEEecCCCEEEEEE
Q 003842          583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------FKGGTAQMRFQPHLGRYLAAA  656 (792)
Q Consensus       583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~------~~~~~~~v~~sp~~~~lla~s  656 (792)
                      ++.  ..+..+.+|...|++|+|+|++..+|++|+.|+.|++||+++.+....      +...+.+++|+|++.+|++++
T Consensus       238 ~~~--~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~  315 (435)
T 4e54_B          238 MDG--KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD  315 (435)
T ss_dssp             SSS--CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred             cCc--ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence            974  567778899999999999999998999999999999999988764433      234678899999999999999


Q ss_pred             cCCeEEEEECCCCeEEEEecCCCC------CeEEEEEcCCCCEEEEEe------------CC-eEEEEECCCCCCcceEE
Q 003842          657 AENVVSILDAETQACRLSLQGHTK------PIDSVCWDPSGELLASVS------------ED-SVRVWTVGSGSEGECVH  717 (792)
Q Consensus       657 ~dg~I~i~D~~t~~~~~~l~~h~~------~V~sv~~spdg~~Las~s------------~d-~I~IwDl~s~~~~~~i~  717 (792)
                      .|+.|+|||++++.+...+..|..      .+..+.|++++.+++++.            ++ .|++||+.++   ..+.
T Consensus       316 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---~~~~  392 (435)
T 4e54_B          316 QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---KMMC  392 (435)
T ss_dssp             SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---CEEE
T ss_pred             CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---cEEE
Confidence            999999999999988777766543      233456777777776654            23 6999999877   5555


Q ss_pred             Ee-ecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 003842          718 EL-SCNGNKFHSC-VFHPTYPSLLVIGCYQSLELWNMSENKT  757 (792)
Q Consensus       718 ~~-~~~~~~i~si-~fspdg~~L~sgs~dg~I~IwDl~~~~~  757 (792)
                      .+ ..|...|.++ +|+|++.+|++|+ |+.|+|||+++++.
T Consensus       393 ~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          393 QLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             EECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             EEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            54 3566777776 6999999888765 78999999998764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=4.9e-30  Score=287.19  Aligned_cols=285  Identities=9%  Similarity=0.058  Sum_probs=241.8

Q ss_pred             ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE-----EeccCCCCEEEEEECCCCCeEEEEeCC
Q 003842          501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-----NLEEHSSLITDVRFSPSMPRLATSSFD  575 (792)
Q Consensus       501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~-----~l~~h~~~V~~i~fspdg~~Lasgs~D  575 (792)
                      .++.+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++.+.     .+.+|...|.+++|++++.++++++.|
T Consensus       112 ~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d  190 (433)
T 3bws_A          112 THRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA  190 (433)
T ss_dssp             SEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred             cceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence            445666666654 46699999988888888889999999999998887     445789999999999999999999999


Q ss_pred             CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEE
Q 003842          576 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYL  653 (792)
Q Consensus       576 g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll  653 (792)
                      +.|++||+++ +..+..+..|...+.+++|+|++..++++++.|+.|++||+++++.+..+..  .+..++|+|+++.++
T Consensus       191 ~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  269 (433)
T 3bws_A          191 NAVHVFDLKT-LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELY  269 (433)
T ss_dssp             TEEEEEETTT-CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEE
T ss_pred             CEEEEEECCC-ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEE
Confidence            9999999987 6677788889999999999999998888888899999999999998877653  467789999999999


Q ss_pred             EEE--------cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEE-EEEeCC-eEEEEECCCCCCcceEEEeecCC
Q 003842          654 AAA--------AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL-ASVSED-SVRVWTVGSGSEGECVHELSCNG  723 (792)
Q Consensus       654 a~s--------~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~L-as~s~d-~I~IwDl~s~~~~~~i~~~~~~~  723 (792)
                      +++        .|+.|++||+++++.+..+. |...+.+++|+|+++++ ++++.+ .|++||+.++   +.+..+. +.
T Consensus       270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---~~~~~~~-~~  344 (433)
T 3bws_A          270 IAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---KVQKSIP-VF  344 (433)
T ss_dssp             EEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---EEEEEEE-CS
T ss_pred             EEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---cEEEEec-CC
Confidence            888        48899999999998777653 55688999999999855 555666 9999999865   4555554 56


Q ss_pred             CceEEEEEeCCCCEEEEEEc---------------CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC-CCc
Q 003842          724 NKFHSCVFHPTYPSLLVIGC---------------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH-DKF  787 (792)
Q Consensus       724 ~~i~si~fspdg~~L~sgs~---------------dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~-DG~  787 (792)
                      ..+.+++|+|++++|++++.               ||.|++||+.+++.+....+...+.+++|+|++++|++++. |+.
T Consensus       345 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~  424 (433)
T 3bws_A          345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQ  424 (433)
T ss_dssp             SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTE
T ss_pred             CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCe
Confidence            77999999999999998887               46999999999998865555678999999999999998875 999


Q ss_pred             EEEeC
Q 003842          788 VKLWK  792 (792)
Q Consensus       788 I~IWd  792 (792)
                      |+||+
T Consensus       425 i~v~~  429 (433)
T 3bws_A          425 IRVYR  429 (433)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.98  E-value=3.7e-30  Score=289.88  Aligned_cols=285  Identities=20%  Similarity=0.420  Sum_probs=225.1

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ..+.++..|+.++++++.+   ++||+.+++                                              ...
T Consensus       134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~----------------------------------------------~~~  167 (435)
T 1p22_A          134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE----------------------------------------------CKR  167 (435)
T ss_dssp             CCEEEEECCSSEEEEEESSSCEEEEESSSCC----------------------------------------------EEE
T ss_pred             CcEEEEEECCCEEEEEeCCCeEEEEeCCCCe----------------------------------------------EEE
Confidence            4566777788888775443   778876543                                              234


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      .+.+|.+.|+|++|  ++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|++  .+|++|+.||.|++||+.+.
T Consensus       168 ~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  243 (435)
T 1p22_A          168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASP  243 (435)
T ss_dssp             EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSS
T ss_pred             EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCC
Confidence            56789999999999  788999999999999999999999999999999999999974  59999999999999999874


Q ss_pred             Cce--eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCeE
Q 003842          587 GYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVV  661 (792)
Q Consensus       587 ~~~--i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~I  661 (792)
                      ...  ...+.+|...|.+++|.  + .++++|+.||.|++||+++++++..+..+   +.++.+  ++..+++++.|+.|
T Consensus       244 ~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i  318 (435)
T 1p22_A          244 TDITLRRVLVGHRAAVNVVDFD--D-KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTI  318 (435)
T ss_dssp             SCCEEEEEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCE
T ss_pred             CCceeeeEecCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeE
Confidence            332  26778899999999993  3 46779999999999999999998887643   455555  56899999999999


Q ss_pred             EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC------cceEEEeecCCCceEEEEEeCC
Q 003842          662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------GECVHELSCNGNKFHSCVFHPT  734 (792)
Q Consensus       662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~------~~~i~~~~~~~~~i~si~fspd  734 (792)
                      ++||+++++++..+.+|...|.+++|  ++.+|++++.| .|++||+.++..      ..++..+..|...|.+++|  +
T Consensus       319 ~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~  394 (435)
T 1p22_A          319 RLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--D  394 (435)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--C
T ss_pred             EEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--C
Confidence            99999999999999999999999998  78899999999 999999976532      1278888999999999999  7


Q ss_pred             CCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEe
Q 003842          735 YPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS  773 (792)
Q Consensus       735 g~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fs  773 (792)
                      +.+|++++.||.|++||+.+...........++.++.|.
T Consensus       395 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  433 (435)
T 1p22_A          395 EFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYI  433 (435)
T ss_dssp             SSCEEECCSSSEEEEEC----------------------
T ss_pred             CCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeee
Confidence            888999999999999999887766444444455555554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.98  E-value=7.8e-31  Score=294.32  Aligned_cols=287  Identities=13%  Similarity=0.191  Sum_probs=225.1

Q ss_pred             CcceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003842          429 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA  505 (792)
Q Consensus       429 ~k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~  505 (792)
                      ....+.|+|||.++++++.+   +|||+.+++....                                   .....++..
T Consensus        30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~-----------------------------------~~~~~~~~~   74 (447)
T 3dw8_B           30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS-----------------------------------HSRGEYNVY   74 (447)
T ss_dssp             SEEEEEECSSSSEEEEEETTSEEEEEEECC-----C-----------------------------------CCCCCEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc-----------------------------------ccccceeEe
Confidence            34578999999999886554   8899887652210                                   012234566


Q ss_pred             eeeecCC------------CCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCcee------------------------
Q 003842          506 NSVRAST------------SKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKSK------------------------  547 (792)
Q Consensus       506 ~~l~~H~------------~~V~~lafspdg--~~Lasgs~Dg~I~vWdl~t~~~~------------------------  547 (792)
                      ..+.+|.            +.|++++|+|++  .+|++++.|+.|+|||+.++...                        
T Consensus        75 ~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  154 (447)
T 3dw8_B           75 STFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRV  154 (447)
T ss_dssp             EEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCC
T ss_pred             cccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEe
Confidence            7788898            889999999998  79999999999999998764432                        


Q ss_pred             ---------------EE-eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE-------EecccCCCeEEEE
Q 003842          548 ---------------TN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-------TFMGHSASVMSLD  604 (792)
Q Consensus       548 ---------------~~-l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~-------~~~~h~~~V~sl~  604 (792)
                                     .. +.+|...|++++|+|++++|++| .|+.|+|||+++....+.       .+.+|...|++++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  233 (447)
T 3dw8_B          155 PVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAE  233 (447)
T ss_dssp             CEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEE
T ss_pred             ccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEE
Confidence                           12 36799999999999999999998 899999999985344444       2568999999999


Q ss_pred             EcCCCCeEEEEEeCCCcEEEEEcCCCee----EEEeeC---------------CeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003842          605 FHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKG---------------GTAQMRFQPHLGRYLAAAAENVVSILD  665 (792)
Q Consensus       605 fspd~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~~---------------~~~~v~~sp~~~~lla~s~dg~I~i~D  665 (792)
                      |+|++..+|++|+.||.|++||+++++.    +..+..               .+.+++|+|++.++++++. +.|++||
T Consensus       234 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd  312 (447)
T 3dw8_B          234 FHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWD  312 (447)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEE
T ss_pred             ECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEe
Confidence            9999856888999999999999999886    566543               6788999999999999888 9999999


Q ss_pred             CCC-CeEEEEecCCCCC---------------eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE----------
Q 003842          666 AET-QACRLSLQGHTKP---------------IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE----------  718 (792)
Q Consensus       666 ~~t-~~~~~~l~~h~~~---------------V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~----------  718 (792)
                      +++ ++++..+.+|...               +..++|+|++++|++++.| .|+|||+.++........          
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  392 (447)
T 3dw8_B          313 LNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVL  392 (447)
T ss_dssp             TTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBC
T ss_pred             CCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccccccccc
Confidence            997 8888888877532               3349999999999999999 999999987632110000          


Q ss_pred             -------------------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003842          719 -------------------LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       719 -------------------~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~  753 (792)
                                         .......|..++|+|++.+|++++.++ +++|..+
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          393 KPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             CCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence                               002234688999999999998887765 8888754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=1.8e-30  Score=286.34  Aligned_cols=240  Identities=13%  Similarity=0.155  Sum_probs=192.1

Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEe-----------CCCeEEEEECCCCceeEE----e-----ccCCCCEEEEEECCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGG-----------HDKKAVLWHTDTLKSKTN----L-----EEHSSLITDVRFSPSM  566 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs-----------~Dg~I~vWdl~t~~~~~~----l-----~~h~~~V~~i~fspdg  566 (792)
                      .+.+|.+.|.|++|+.  +.+++|+           .|+.|++|++.+......    .     ..+...+.+++|+|||
T Consensus        68 ~l~~~~~~v~s~~~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg  145 (365)
T 4h5i_A           68 ALEDNDDSPTAIDASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG  145 (365)
T ss_dssp             ECCTTSCCCCEEEEET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred             EccCCCCceEEEEeCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence            4678888898887754  4676654           477899999876532221    1     1345679999999999


Q ss_pred             CeEEEE--eCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-----eCC
Q 003842          567 PRLATS--SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGG  639 (792)
Q Consensus       567 ~~Lasg--s~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~  639 (792)
                      ++|+++  +.|++|+|||+.+ ...+..+. |...|.+|+|+|++. ++++++ ++.+++|+..++..+...     ...
T Consensus       146 ~~la~as~~~d~~i~iwd~~~-~~~~~~~~-~~~~V~~v~fspdg~-~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (365)
T 4h5i_A          146 TVAAIASSKVPAIMRIIDPSD-LTEKFEIE-TRGEVKDLHFSTDGK-VVAYIT-GSSLEVISTVTGSCIARKTDFDKNWS  221 (365)
T ss_dssp             SCEEEEESCSSCEEEEEETTT-TEEEEEEE-CSSCCCEEEECTTSS-EEEEEC-SSCEEEEETTTCCEEEEECCCCTTEE
T ss_pred             CEEEEEECCCCCEEEEeECCC-CcEEEEeC-CCCceEEEEEccCCc-eEEecc-ceeEEEEEeccCcceeeeecCCCCCC
Confidence            997654  4789999999997 56666664 778899999999986 555776 566778887777765432     124


Q ss_pred             eeEEEEecCCCEEEEEEcCC----eEEEEECCCCeE----EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003842          640 TAQMRFQPHLGRYLAAAAEN----VVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG  710 (792)
Q Consensus       640 ~~~v~~sp~~~~lla~s~dg----~I~i~D~~t~~~----~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~  710 (792)
                      +.+++|+|++..+++++.++    .+++||+.....    ...+.+|...|++++|+|+|++||+|+.| .|+|||++++
T Consensus       222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~  301 (365)
T 4h5i_A          222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL  301 (365)
T ss_dssp             EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence            67799999999999998876    688899877643    35677899999999999999999999999 9999999876


Q ss_pred             CCcceEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003842          711 SEGECVHEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN  755 (792)
Q Consensus       711 ~~~~~i~~~-~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~  755 (792)
                         +++..+ .+|...|++++|+||+++|++++.|++|+|||+..+
T Consensus       302 ---~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          302 ---SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             ---EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             ---cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence               677764 689999999999999999999999999999999654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1e-29  Score=287.75  Aligned_cols=270  Identities=14%  Similarity=0.164  Sum_probs=220.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeEEecc-------------------------------------
Q 003842          513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEE-------------------------------------  552 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~---~~~~l~~-------------------------------------  552 (792)
                      .+|.|++|++||++|+++ .++.|++||+.+++   .+..+..                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            468999999999977666 57899999999998   5555543                                     


Q ss_pred             -----------------CCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCC--CCCceeEEec--ccCCCeEEEEEcCCCC
Q 003842          553 -----------------HSSLITDVRFSPSMPRL-ATSSFDKTVRVWDAD--NPGYSLRTFM--GHSASVMSLDFHPNKD  610 (792)
Q Consensus       553 -----------------h~~~V~~i~fspdg~~L-asgs~Dg~V~IWdl~--s~~~~i~~~~--~h~~~V~sl~fspd~~  610 (792)
                                       |...|++++|+|++++| ++++.||.|+|||+.  + +..+..+.  .|...|++++|+|++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS-KNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS-SSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC-CceeeeeecccCCCCceEEEEcCCCC
Confidence                             33379999999999996 899999999999998  5 55666665  5778999999999976


Q ss_pred             eEEEEEeCCCcEEEEEcCCCeeEE-------EeeCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeEEEE-ecCCC
Q 003842          611 DLICSCDGDGEIRYWSINNGSCTR-------VFKGGTAQMRFQPH---LGRYLAAAAENVVSILDAETQACRLS-LQGHT  679 (792)
Q Consensus       611 ~ll~sgs~Dg~I~iwdl~~~~~~~-------~~~~~~~~v~~sp~---~~~lla~s~dg~I~i~D~~t~~~~~~-l~~h~  679 (792)
                       +|++++.||.|++|++.++....       .....+.+++|+|+   +.++++++.|+.|++||+++++.+.. +.+|.
T Consensus       163 -~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~  241 (450)
T 2vdu_B          163 -TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK  241 (450)
T ss_dssp             -EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred             -EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence             55688899999999998876442       23457889999999   88999999999999999999988777 56899


Q ss_pred             CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee-------------------------cCCCceEEEEEeC
Q 003842          680 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-------------------------CNGNKFHSCVFHP  733 (792)
Q Consensus       680 ~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~-------------------------~~~~~i~si~fsp  733 (792)
                      ..|.+++|+ ++++|++++.| .|+|||+.++   +++..+.                         .....+..++|+|
T Consensus       242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  317 (450)
T 2vdu_B          242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK  317 (450)
T ss_dssp             SCEEEEEEC-STTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred             CceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence            999999999 99999999999 9999999887   4444443                         2235689999999


Q ss_pred             CCCEEEEEE-cCCeEEEEEC--CCC---cEE-EEcccCCCeEEEEEeCCCCEEEEEeC-------CCcEEEe
Q 003842          734 TYPSLLVIG-CYQSLELWNM--SEN---KTM-TLTAHEGLIAALAVSTETGYVASASH-------DKFVKLW  791 (792)
Q Consensus       734 dg~~L~sgs-~dg~I~IwDl--~~~---~~~-~~~~h~~~V~sl~fspdg~~LaSgs~-------DG~I~IW  791 (792)
                      ++++|++++ .++.|+|||+  .++   +.+ .+..| +.|.+++|+|++ ++++++.       +..|.||
T Consensus       318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~  387 (450)
T 2vdu_B          318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI  387 (450)
T ss_dssp             SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence            999999999 8999999999  554   333 45566 889999999964 4444433       4557877

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=5.3e-30  Score=288.65  Aligned_cols=250  Identities=18%  Similarity=0.362  Sum_probs=214.2

Q ss_pred             eeeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCC----------CceeEEeccCCCCEEEEEECCCCC-eEEEE
Q 003842          505 ANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDT----------LKSKTNLEEHSSLITDVRFSPSMP-RLATS  572 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~t----------~~~~~~l~~h~~~V~~i~fspdg~-~Lasg  572 (792)
                      ......|.+.|++++|+|+ +++||+++.||.|+|||+.+          ...+..+.+|...|++|+|+|++. +|++|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            3456689999999999997 78999999999999999986          677888999999999999999988 99999


Q ss_pred             eCCCcEEEEeCCCCCc------eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEe
Q 003842          573 SFDKTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ  646 (792)
Q Consensus       573 s~Dg~V~IWdl~s~~~------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s  646 (792)
                      +.||.|+|||+.....      ....+.+|...|.+++|+|++..+|++++.||.|++||++++..              
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--------------  266 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--------------  266 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--------------
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--------------
Confidence            9999999999987322      14667789999999999997778898999999999999986521              


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCC
Q 003842          647 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGN  724 (792)
Q Consensus       647 p~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~-~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~  724 (792)
                                            .+.+..+..|...|++++|+|++. +|++++.| .|++||+++..  ..+..+..|..
T Consensus       267 ----------------------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~  322 (430)
T 2xyi_A          267 ----------------------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKD  322 (430)
T ss_dssp             ----------------------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSS
T ss_pred             ----------------------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCC
Confidence                                  122233446888999999999987 68889988 99999998643  46677788999


Q ss_pred             ceEEEEEeCCCC-EEEEEEcCCeEEEEECCC--------------CcEE-EEcccCCCeEEEEEeCCCC-EEEEEeCCCc
Q 003842          725 KFHSCVFHPTYP-SLLVIGCYQSLELWNMSE--------------NKTM-TLTAHEGLIAALAVSTETG-YVASASHDKF  787 (792)
Q Consensus       725 ~i~si~fspdg~-~L~sgs~dg~I~IwDl~~--------------~~~~-~~~~h~~~V~sl~fspdg~-~LaSgs~DG~  787 (792)
                      .|.+++|+|+++ +|++++.|+.|+|||+..              ...+ .+.+|...|++++|+|++. +|++++.||.
T Consensus       323 ~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~  402 (430)
T 2xyi_A          323 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI  402 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred             CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence            999999999995 688999999999999987              2333 6678999999999999999 9999999999


Q ss_pred             EEEeC
Q 003842          788 VKLWK  792 (792)
Q Consensus       788 I~IWd  792 (792)
                      |+||+
T Consensus       403 i~iw~  407 (430)
T 2xyi_A          403 MQVWQ  407 (430)
T ss_dssp             EEEEE
T ss_pred             EEEeE
Confidence            99996

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.2e-31  Score=295.96  Aligned_cols=260  Identities=17%  Similarity=0.231  Sum_probs=214.9

Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCceeEEe-ccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCC---CC--ceeEE
Q 003842          520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADN---PG--YSLRT  592 (792)
Q Consensus       520 fspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l-~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s---~~--~~i~~  592 (792)
                      |++++..+++++      +|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|+|||+.+   ..  .....
T Consensus        35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~  107 (437)
T 3gre_A           35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT  107 (437)
T ss_dssp             GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred             cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence            677887777665      387 557888888 88999999999999 999999999999999999975   22  12333


Q ss_pred             ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC---CCeeEEEeeC---------------CeeEEE--EecCCCEE
Q 003842          593 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN---NGSCTRVFKG---------------GTAQMR--FQPHLGRY  652 (792)
Q Consensus       593 ~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~---~~~~~~~~~~---------------~~~~v~--~sp~~~~l  652 (792)
                      + .|...|++++|+|++. +|++++.||.|++||++   .+++...+..               .+.++.  +++++..+
T Consensus       108 ~-~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l  185 (437)
T 3gre_A          108 Y-DCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL  185 (437)
T ss_dssp             E-ECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred             c-cCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence            3 5999999999999865 66699999999999995   5554443321               223333  45778899


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee-cCCCceEE
Q 003842          653 LAAAAENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHS  728 (792)
Q Consensus       653 la~s~dg~I~i~D~~t~~~~~~l~~--h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~-~~~~~i~s  728 (792)
                      ++++.|+.|++||+++++++..+..  |...|++++|+|++++|++++.| .|++||++++   .++..+. .+...|.+
T Consensus       186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~  262 (437)
T 3gre_A          186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPITH  262 (437)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEEE
T ss_pred             EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceEE
Confidence            9999999999999999999999988  88999999999999999999999 9999999875   6777765 67778999


Q ss_pred             EEEeC----CCCEEEEEEcCCeEEEEECCCCcEE-EEcc--------------------------cCCCeEEEEEeCCCC
Q 003842          729 CVFHP----TYPSLLVIGCYQSLELWNMSENKTM-TLTA--------------------------HEGLIAALAVSTETG  777 (792)
Q Consensus       729 i~fsp----dg~~L~sgs~dg~I~IwDl~~~~~~-~~~~--------------------------h~~~V~sl~fspdg~  777 (792)
                      ++|+|    ++.+|++++.|+.|+|||+.+++++ .+.+                          |...|++++|+ +++
T Consensus       263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~  341 (437)
T 3gre_A          263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK  341 (437)
T ss_dssp             EEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred             EEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence            96664    6779999999999999999988866 3332                          56678999999 789


Q ss_pred             EEEEEeCCCcEEEeC
Q 003842          778 YVASASHDKFVKLWK  792 (792)
Q Consensus       778 ~LaSgs~DG~I~IWd  792 (792)
                      +|++|+.||.|+|||
T Consensus       342 ~l~s~~~d~~i~~wd  356 (437)
T 3gre_A          342 ILLTDEATSSIVMFS  356 (437)
T ss_dssp             EEEEEGGGTEEEEEE
T ss_pred             EEEecCCCCeEEEEE
Confidence            999999999999996

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1e-30  Score=284.96  Aligned_cols=263  Identities=10%  Similarity=0.059  Sum_probs=211.2

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC--------Ccee
Q 003842          519 HFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP--------GYSL  590 (792)
Q Consensus       519 afspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~--------~~~i  590 (792)
                      .+..|+++|++|+.||.|++||+.+++.+..+.  ...|.++.|+|+   |++++.|++|++|+.+..        ...+
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            445688899999999999999999999888887  466888889988   999999999999977631        2323


Q ss_pred             EEe-cccCCCeEEEEEcC--CCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEcCCeEEE
Q 003842          591 RTF-MGHSASVMSLDFHP--NKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSI  663 (792)
Q Consensus       591 ~~~-~~h~~~V~sl~fsp--d~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~dg~I~i  663 (792)
                      ..+ ..|...|.+++|+|  ++. ++++++.||.|++||+++++++..+.    ..+.+++|+|++..+++++.|+.|++
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i  196 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV  196 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             EEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence            333 36778999999999  765 66699999999999999998876552    35788999999999999999999999


Q ss_pred             EECCCCeEE-EEecC-CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCce--EEEEEeCCCCEEE
Q 003842          664 LDAETQACR-LSLQG-HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKF--HSCVFHPTYPSLL  739 (792)
Q Consensus       664 ~D~~t~~~~-~~l~~-h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i--~si~fspdg~~L~  739 (792)
                      ||+++++.+ ..+.. |...|++++|+|++.+|++++++.|++||+++......+..+..+...+  .+++|+|++++|+
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  276 (343)
T 3lrv_A          197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI  276 (343)
T ss_dssp             EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred             EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence            999999877 78888 9999999999999999999997799999999875443333333333333  4699999999999


Q ss_pred             EEEc-CCeEEEEECCCCcEE-EEcccCCCeEEEEEeC---CCCEEEEEeCCCcEEEe
Q 003842          740 VIGC-YQSLELWNMSENKTM-TLTAHEGLIAALAVST---ETGYVASASHDKFVKLW  791 (792)
Q Consensus       740 sgs~-dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fsp---dg~~LaSgs~DG~I~IW  791 (792)
                      +++. |+.|+||++.+.... ..    ..+..++|.+   +...|++++.||.+++|
T Consensus       277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          277 AYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             EEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             EecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence            9998 999999999665432 22    5567788887   78888888888888775

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.2e-31  Score=303.81  Aligned_cols=254  Identities=10%  Similarity=0.052  Sum_probs=196.4

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCcee----EEeccCCCCEEEEEECCC------CCeEEEEeCCCcEEEEeCCCCCc---
Q 003842          522 SDGKLLATGGHDKKAVLWHTDTLKSK----TNLEEHSSLITDVRFSPS------MPRLATSSFDKTVRVWDADNPGY---  588 (792)
Q Consensus       522 pdg~~Lasgs~Dg~I~vWdl~t~~~~----~~l~~h~~~V~~i~fspd------g~~Lasgs~Dg~V~IWdl~s~~~---  588 (792)
                      |++++|++++.|++|+|||+.+++..    ..+..|.+.|++|+|+|+      +.+||+++.||+|+|||+.+...   
T Consensus       171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~  250 (524)
T 2j04_B          171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH  250 (524)
T ss_dssp             -----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred             hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence            33344555668899999999877643    346678899999999996      57999999999999999986421   


Q ss_pred             -------eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEe---eCCeeEE--EEecCC-CEEEE
Q 003842          589 -------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF---KGGTAQM--RFQPHL-GRYLA  654 (792)
Q Consensus       589 -------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~---~~~~~~v--~~sp~~-~~lla  654 (792)
                             ....+.+|...|++++|++++  +|++|+.||+|++||++++.. ...+   ...+.++  .|++++ ..|++
T Consensus       251 ~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS  328 (524)
T 2j04_B          251 VFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST  328 (524)
T ss_dssp             EEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred             cceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEE
Confidence                   234778899999999999863  678999999999999997643 2333   3567777  467776 78899


Q ss_pred             EEcCCeEEEEECCCCeEEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 003842          655 AAAENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF  731 (792)
Q Consensus       655 ~s~dg~I~i~D~~t~~~~~~l~~h~~--~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~f  731 (792)
                      ++.|+.|+|||+++++++..+.+|..  .|.+++|+|++..|++++.| +|++||++++   .++..+.+|...|.+++|
T Consensus       329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---~~~~~l~gH~~~V~sva~  405 (524)
T 2j04_B          329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRETTITAIGV  405 (524)
T ss_dssp             EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---TCCEEEEECSSCEEEEEC
T ss_pred             eccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---ccceeeecCCCceEEEEe
Confidence            99999999999999877666666543  58899999999999999988 9999999876   556677789999999999


Q ss_pred             eCCCCEEEEEEcCCeEEEEECCCCcEEEEc-----ccCCCeEEEEEeCCCCEEE
Q 003842          732 HPTYPSLLVIGCYQSLELWNMSENKTMTLT-----AHEGLIAALAVSTETGYVA  780 (792)
Q Consensus       732 spdg~~L~sgs~dg~I~IwDl~~~~~~~~~-----~h~~~V~sl~fspdg~~La  780 (792)
                      +|++++|++|+.|++|+|||+.........     .+...|++++|+|+++.+.
T Consensus       406 Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~  459 (524)
T 2j04_B          406 SRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYR  459 (524)
T ss_dssp             CSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEE
T ss_pred             CCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEE
Confidence            999999999999999999998764221111     1122578999999998653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.4e-29  Score=281.79  Aligned_cols=267  Identities=16%  Similarity=0.225  Sum_probs=218.9

Q ss_pred             CCCCCcceeccCCcce-eeeeeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------ceeEEeccCCCCE
Q 003842          487 RDAGGRGMDVSQGFSF-KEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLI  557 (792)
Q Consensus       487 ~d~~~~~~d~~~~~~~-~~~~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~-------~~~~~l~~h~~~V  557 (792)
                      .++.+.+|++.+.... ..+..+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++       +.+..+.+|...|
T Consensus        55 ~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v  134 (402)
T 2aq5_A           55 GGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV  134 (402)
T ss_dssp             SSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCE
T ss_pred             CCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeE
Confidence            3455667776543222 45567889999999999999 9999999999999999999987       6688899999999


Q ss_pred             EEEEECCCC-CeEEEEeCCCcEEEEeCCCCCceeEEe--cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE
Q 003842          558 TDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR  634 (792)
Q Consensus       558 ~~i~fspdg-~~Lasgs~Dg~V~IWdl~s~~~~i~~~--~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~  634 (792)
                      ++++|+|++ .+|++++.||.|+|||+++ +..+..+  ..|...|.+++|+|++. +|++++.||.|++||+++++.+.
T Consensus       135 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~  212 (402)
T 2aq5_A          135 GIVAWHPTAQNVLLSAGCDNVILVWDVGT-GAAVLTLGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKGTVVA  212 (402)
T ss_dssp             EEEEECSSBTTEEEEEETTSCEEEEETTT-TEEEEEECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEEEECcCCCCEEEEEcCCCEEEEEECCC-CCccEEEecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCCceee
Confidence            999999998 6999999999999999997 6777788  78999999999999876 55589999999999999999888


Q ss_pred             Ee-eC----CeeEEEEecCCCEEEEE---EcCCeEEEEECCCCeE-EEEe-cCCCCCeEEEEEcCCCCEEEEEe-CC-eE
Q 003842          635 VF-KG----GTAQMRFQPHLGRYLAA---AAENVVSILDAETQAC-RLSL-QGHTKPIDSVCWDPSGELLASVS-ED-SV  702 (792)
Q Consensus       635 ~~-~~----~~~~v~~sp~~~~lla~---s~dg~I~i~D~~t~~~-~~~l-~~h~~~V~sv~~spdg~~Las~s-~d-~I  702 (792)
                      .+ ..    .+..+.|++++..++++   +.|+.|++||+++.+. +... ..|...|.+++|+|++++|++++ .| .|
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i  292 (402)
T 2aq5_A          213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSI  292 (402)
T ss_dssp             EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred             eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeE
Confidence            77 32    25789999998777777   5899999999998653 2222 24778899999999999987544 56 99


Q ss_pred             EEEECCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          703 RVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       703 ~IwDl~s~~~-~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      ++||+.++.. ...+..+. +...+.+++|+|++.++++  .++.+++|++.++.+.
T Consensus       293 ~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~  346 (402)
T 2aq5_A          293 RYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE  346 (402)
T ss_dssp             EEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred             EEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence            9999987653 23333333 5688999999999987764  5669999999887654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-30  Score=295.85  Aligned_cols=308  Identities=10%  Similarity=0.072  Sum_probs=233.9

Q ss_pred             CcceEEEEeCCCeeeecCCC-eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeee
Q 003842          429 SKPLMMFGTDGAGTLTSPSN-QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS  507 (792)
Q Consensus       429 ~k~~l~~s~Dg~~~~ss~s~-~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~  507 (792)
                      ....+.|||||+.+++++.+ .|=|.+.+   .++.     +-.......-+.+++      ..+.|+++.+... ....
T Consensus        17 ~v~sv~~SpDG~~iASas~D~TV~d~~~~---~~l~-----gh~~~v~~V~FsPdg------~~~~~~~~~~~~~-~~~~   81 (588)
T 2j04_A           17 WKNNLTWARDGTLYLTTFPDISIGQPKYA---KDIN-----CNSKNLFHVKEFPLE------FENKLDFELAQQN-GLLN   81 (588)
T ss_dssp             SSCCEEECTTSCEEEECSSSEEEEEECCC---SCCS-----SBGGGTEEEEEECCC------CCCTTTTSCCCSS-CSST
T ss_pred             cEEEEEECCCCCEEEEEcCCceeeccccc---ceec-----CCCccEEEEEECCCC------CcceEEEEeCCCc-eEee
Confidence            34578999999999998888 33254333   3221     111112222244443      4555555544211 1112


Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC-----CEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~-----~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      + .|...|++|+|||||++||+++.||.|+|||.+.  ++..+. |..     .|.+++|+|||++||+|+.||+|+|||
T Consensus        82 ~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd  157 (588)
T 2j04_A           82 S-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS  157 (588)
T ss_dssp             T-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred             c-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence            2 5588999999999999999999999999999655  666667 665     599999999999999999999999999


Q ss_pred             CCCCCc------eeEEe----cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE---EEe----eCCeeEEEE
Q 003842          583 ADNPGY------SLRTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVF----KGGTAQMRF  645 (792)
Q Consensus       583 l~s~~~------~i~~~----~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~---~~~----~~~~~~v~~  645 (792)
                      +.++..      .+.++    .+|...|.+++|+|++   +++++.|++|++||+..+...   ..+    ...+..++|
T Consensus       158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF  234 (588)
T 2j04_A          158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI  234 (588)
T ss_dssp             CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred             CCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence            987432      35665    6788899999999997   557888999999999887742   333    245788999


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEE--cCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC
Q 003842          646 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW--DPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN  722 (792)
Q Consensus       646 sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~--spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~  722 (792)
                      +  +..+++++ ++.|++||+.+++......+|...|..++|  +|++..|++++++ + ++|.+.              
T Consensus       235 s--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d--------------  296 (588)
T 2j04_A          235 V--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED--------------  296 (588)
T ss_dssp             E--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS--------------
T ss_pred             E--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec--------------
Confidence            9  56666665 799999999998885444479999999999  9999999999988 7 999985              


Q ss_pred             CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC
Q 003842          723 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH  784 (792)
Q Consensus       723 ~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~  784 (792)
                           .+.|+|++..+++.  |++|++|+...+.... ..+...|++++|+|||.++|+++.
T Consensus       297 -----~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~-~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          297 -----ELHVTADNIIAPYL--EKKFKKWSTIWNEFNN-YETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             -----SEEEECCCSSHHHH--HHHHHHTTTTTTSSSS-SCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             -----cEEECCCceEEEEc--CCEEEEEECCCCceee-eccceEEEEEEECCCCCEEEEEEe
Confidence                 15699999866664  8999999987665333 334667999999999999999875

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.6e-30  Score=312.19  Aligned_cols=250  Identities=20%  Similarity=0.319  Sum_probs=212.0

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeEEeccCCCCEEEEEECCC--CCeEEEEeCCCcEEEE
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVW  581 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~--t~~~~~~l~~h~~~V~~i~fspd--g~~Lasgs~Dg~V~IW  581 (792)
                      ..+.+|.+.|+|++|+|+|++|++|+.||.|+|||+.  +++.+..+.+|...|++++|+++  +.+|++|+.||.|+||
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            4678999999999999999999999999999999998  56778889999999999999988  8999999999999999


Q ss_pred             eCCCCC-ceeEEecccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCC
Q 003842          582 DADNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN  659 (792)
Q Consensus       582 dl~s~~-~~i~~~~~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg  659 (792)
                      |+.++. ..+..+.+|...|++++|+|++ ..++++|+.||.|++||++++....                         
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~-------------------------  137 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS-------------------------  137 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC-------------------------
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc-------------------------
Confidence            998732 2667788899999999999982 3466799999999999998653211                         


Q ss_pred             eEEEEECCCCeEEEEecCCCCCeEEEEEcC-------------CCCEEEEEeCC-eEEEEECCCCCCc-ceEEEeecCCC
Q 003842          660 VVSILDAETQACRLSLQGHTKPIDSVCWDP-------------SGELLASVSED-SVRVWTVGSGSEG-ECVHELSCNGN  724 (792)
Q Consensus       660 ~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp-------------dg~~Las~s~d-~I~IwDl~s~~~~-~~i~~~~~~~~  724 (792)
                                  ...+.+|...|.+++|+|             ++.+|++++.| .|++||++++... .++..+..|..
T Consensus       138 ------------~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~  205 (753)
T 3jro_A          138 ------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD  205 (753)
T ss_dssp             ------------CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred             ------------eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC
Confidence                        112345788899999999             58999999998 9999999876433 56677888999


Q ss_pred             ceEEEEEeCC---CCEEEEEEcCCeEEEEECCCCc------EEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          725 KFHSCVFHPT---YPSLLVIGCYQSLELWNMSENK------TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       725 ~i~si~fspd---g~~L~sgs~dg~I~IwDl~~~~------~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .|.+++|+|+   +.+|++++.||.|++||+.++.      ......|...|++++|+|++.+|++|+.||.|+|||
T Consensus       206 ~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          206 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (753)
T ss_dssp             CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred             cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence            9999999999   8999999999999999998873      224456889999999999999999999999999996

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1e-28  Score=279.58  Aligned_cols=244  Identities=10%  Similarity=0.036  Sum_probs=201.9

Q ss_pred             eeecCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECC--CCceeEEec--cCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          507 SVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTD--TLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~L-asgs~Dg~I~vWdl~--t~~~~~~l~--~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      ...+|.+.|++++|+|+|++| |+|+.||.|+|||+.  +++.+..+.  .|...|++++|+|++++|++|+.||.|++|
T Consensus        97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~  176 (450)
T 2vdu_B           97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI  176 (450)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence            446788899999999999996 889999999999999  888888886  577899999999999999999999999999


Q ss_pred             eCCCCCc---eeEEecccCCCeEEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeEEEe----eCCeeEEEEecCCCEE
Q 003842          582 DADNPGY---SLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRY  652 (792)
Q Consensus       582 dl~s~~~---~i~~~~~h~~~V~sl~fspd--~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~sp~~~~l  652 (792)
                      ++.+...   ....+.+|...|++++|+|+  +..+|++|+.|+.|++||+++++++..+    ...+.+++|+ ++.++
T Consensus       177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l  255 (450)
T 2vdu_B          177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL  255 (450)
T ss_dssp             ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred             ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence            9987332   23367789999999999998  2346779999999999999999877663    3467889999 99999


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEecC-------------------------CCCCeEEEEEcCCCCEEEEEe-CC-eEEEE
Q 003842          653 LAAAAENVVSILDAETQACRLSLQG-------------------------HTKPIDSVCWDPSGELLASVS-ED-SVRVW  705 (792)
Q Consensus       653 la~s~dg~I~i~D~~t~~~~~~l~~-------------------------h~~~V~sv~~spdg~~Las~s-~d-~I~Iw  705 (792)
                      ++++.|+.|++||+++++++..+..                         ....|.+++|+|++++|++++ .+ .|+||
T Consensus       256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw  335 (450)
T 2vdu_B          256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL  335 (450)
T ss_dssp             EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            9999999999999999998887763                         245799999999999999998 56 99999


Q ss_pred             EC--CCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-------CCeEEEEECC
Q 003842          706 TV--GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-------YQSLELWNMS  753 (792)
Q Consensus       706 Dl--~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-------dg~I~IwDl~  753 (792)
                      |+  ..+.....+..+..+ ..+.+++|+|++ .+++++.       +..|.||.+.
T Consensus       336 ~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          336 EMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence            99  554445667777777 789999999954 4444433       3457888654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=4.8e-28  Score=267.14  Aligned_cols=260  Identities=12%  Similarity=0.142  Sum_probs=218.3

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCCCCCceeEEecccCCCeEEE
Q 003842          525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL  603 (792)
Q Consensus       525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~L-asgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl  603 (792)
                      .++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+ +..+..+..+. .|.++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~-~~~~~~~~~~~-~v~~~   79 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPAGS-SPQGV   79 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEECSS-SEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCC-CeEEEEEECCC-Cccce
Confidence            367888999999999999999999888775 48999999999976 6777999999999987 56666666544 89999


Q ss_pred             EEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEE-EEEcCCeEEEEECCCCeEEEEecCCCC
Q 003842          604 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYL-AAAAENVVSILDAETQACRLSLQGHTK  680 (792)
Q Consensus       604 ~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll-a~s~dg~I~i~D~~t~~~~~~l~~h~~  680 (792)
                      +|+|+++.++++++.|+.|++||+.+++.+..+..  .+..++|+++++.++ +++.++.|++||+++++.+..+..+ .
T Consensus        80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~  158 (391)
T 1l0q_A           80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R  158 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred             EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence            99999998888888889999999999998877653  467899999999884 5556999999999999998888765 4


Q ss_pred             CeEEEEEcCCCCEE-EEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE---cCCeEEEEECCCC
Q 003842          681 PIDSVCWDPSGELL-ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG---CYQSLELWNMSEN  755 (792)
Q Consensus       681 ~V~sv~~spdg~~L-as~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs---~dg~I~IwDl~~~  755 (792)
                      .+.+++|+|++++| ++++.+ .|++||++++   .++..+. +...+.+++|+|++++|++++   .++.|++||+.++
T Consensus       159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            57999999999987 455666 9999999876   4454444 456789999999999999998   6899999999999


Q ss_pred             cEEEEcccCCCeEEEEEeCCCCEE-EEEeCCCcEEEeC
Q 003842          756 KTMTLTAHEGLIAALAVSTETGYV-ASASHDKFVKLWK  792 (792)
Q Consensus       756 ~~~~~~~h~~~V~sl~fspdg~~L-aSgs~DG~I~IWd  792 (792)
                      +.+........+.+++|+|++++| ++++.|+.|++||
T Consensus       235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d  272 (391)
T 1l0q_A          235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID  272 (391)
T ss_dssp             EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence            887444444568999999999977 5678899999996

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=6e-29  Score=268.37  Aligned_cols=269  Identities=10%  Similarity=0.135  Sum_probs=223.8

Q ss_pred             CcceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003842          429 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA  505 (792)
Q Consensus       429 ~k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~  505 (792)
                      ....+.|+||+.++++++.+   +|||+.+++                                           .....
T Consensus        13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~-------------------------------------------~~~~~   49 (342)
T 1yfq_A           13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQA-------------------------------------------KNVDL   49 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTT-------------------------------------------TEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC-------------------------------------------ccccc
Confidence            34578999999988775443   778765542                                           11223


Q ss_pred             eeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEC-CCCceeEEecc--CCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          506 NSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHT-DTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl-~t~~~~~~l~~--h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      ..+.+|...|++++|+++++ +|++|+.||.|++||+ .+++. ..+..  |...|++++|+| +.+|++++.|+.|++|
T Consensus        50 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iw  127 (342)
T 1yfq_A           50 LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVI  127 (342)
T ss_dssp             EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEE
T ss_pred             eeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEE
Confidence            44558999999999999999 9999999999999999 77654 77788  999999999999 9999999999999999


Q ss_pred             eCCCC--------CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeE--EE---eeCCeeEEEEec
Q 003842          582 DADNP--------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCT--RV---FKGGTAQMRFQP  647 (792)
Q Consensus       582 dl~s~--------~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~--~~---~~~~~~~v~~sp  647 (792)
                      |+++.        ...+..+. |...|.+++|++++   +++++.|+.|++||+++ +...  ..   ....+.+++|+|
T Consensus       128 d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~  203 (342)
T 1yfq_A          128 DPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP  203 (342)
T ss_dssp             CHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECS
T ss_pred             cccccccccccccCCeeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECC
Confidence            98751        22333444 88999999999875   66899999999999998 5432  11   245678899999


Q ss_pred             -CCCEEEEEEcCCeEEEEECCCC------eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003842          648 -HLGRYLAAAAENVVSILDAETQ------ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSG  710 (792)
Q Consensus       648 -~~~~lla~s~dg~I~i~D~~t~------~~~~~l~~h~~---------~V~sv~~spdg~~Las~s~d-~I~IwDl~s~  710 (792)
                       ++..+++++.||.|++||++..      +.+..+..|..         .|.+++|+|++++|++++.| .|++||+.++
T Consensus       204 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  283 (342)
T 1yfq_A          204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             GGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             CCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence             9999999999999999999887      77778887765         99999999999999999999 9999999876


Q ss_pred             CCcceEEEeecC-CCceEEEEEeCCCCEEEEEEcCCe-EEEEE
Q 003842          711 SEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCYQS-LELWN  751 (792)
Q Consensus       711 ~~~~~i~~~~~~-~~~i~si~fspdg~~L~sgs~dg~-I~IwD  751 (792)
                         +.+..+..| ...|.+++  |++.+|++++.||. .+.|.
T Consensus       284 ---~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          284 ---KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             ---EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             ---hHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence               778888888 89999999  99999999999998 55554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.5e-30  Score=289.32  Aligned_cols=259  Identities=12%  Similarity=0.102  Sum_probs=210.6

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCce
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS  589 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~  589 (792)
                      .-...|.+++|+|||+++|+++.|++|+  |...++   .+.+|...|++++|+|+|       .++.+.+|+.+.  ..
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~--~~   78 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQ--NG   78 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS--SC
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCC--ce
Confidence            4457899999999999999999999999  755554   447999999999999998       455555555432  12


Q ss_pred             eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC-------CeeEEEEecCCCEEEEEEcCCeEE
Q 003842          590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-------GTAQMRFQPHLGRYLAAAAENVVS  662 (792)
Q Consensus       590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-------~~~~v~~sp~~~~lla~s~dg~I~  662 (792)
                      +..+ .|...|.+++|+|+|. +|++++.||.|++||...  ++..+..       .+.+++|+|++..|++++.||.|+
T Consensus        79 ~~~~-~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk  154 (588)
T 2j04_A           79 LLNS-QPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ  154 (588)
T ss_dssp             SSTT-SCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             Eeec-CCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence            2222 4588999999999987 455999999999999644  4444432       277899999999999999999999


Q ss_pred             EEECCCCe-------EEEEe----cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe-ecCCCceEEE
Q 003842          663 ILDAETQA-------CRLSL----QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL-SCNGNKFHSC  729 (792)
Q Consensus       663 i~D~~t~~-------~~~~l----~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~-~~~~~~i~si  729 (792)
                      |||+.++.       .+.++    .+|..+|.+++|+|+|  +++++.| .|++||+..+........+ ..|...|.++
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sv  232 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDL  232 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCE
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEE
Confidence            99999885       35666    6688899999999999  6666767 9999999876432234555 3677899999


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCcEEE-EcccCCCeEEEEE--eCCCCEEEEEeCCCcEEEeC
Q 003842          730 VFHPTYPSLLVIGCYQSLELWNMSENKTMT-LTAHEGLIAALAV--STETGYVASASHDKFVKLWK  792 (792)
Q Consensus       730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-~~~h~~~V~sl~f--spdg~~LaSgs~DG~I~IWd  792 (792)
                      +|+  +.+|++++ +++|++||+.+++... ..+|...|.+++|  +||+..|+++++||+ ++|.
T Consensus       233 aFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~  294 (588)
T 2j04_A          233 KIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL  294 (588)
T ss_dssp             EEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred             EEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence            999  57888886 6999999999998854 4489999999999  999999999999999 9984

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=5.9e-28  Score=262.01  Aligned_cols=277  Identities=15%  Similarity=0.263  Sum_probs=223.8

Q ss_pred             CcceEEEEeC---CCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcce
Q 003842          429 SKPLMMFGTD---GAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSF  502 (792)
Q Consensus       429 ~k~~l~~s~D---g~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~  502 (792)
                      ....+.|+|+   |.++++++.+   +|||+.+...                                            
T Consensus        41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~--------------------------------------------   76 (368)
T 3mmy_A           41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ--------------------------------------------   76 (368)
T ss_dssp             CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--------------------------------------------
T ss_pred             ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--------------------------------------------
Confidence            4567899999   5887775544   7788765210                                            


Q ss_pred             eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEE--CCCCCeEEEEeCCCcEEE
Q 003842          503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--SPSMPRLATSSFDKTVRV  580 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~f--spdg~~Lasgs~Dg~V~I  580 (792)
                      .....+.+|...|++++|+|++++|++|+.||.|+|||+.+++.+. +..|...|++++|  ++++.+|++++.||.|++
T Consensus        77 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v  155 (368)
T 3mmy_A           77 TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKF  155 (368)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEE
T ss_pred             eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEE
Confidence            1225677899999999999999999999999999999999988766 5679999999999  999999999999999999


Q ss_pred             EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-----eCCeeEEEEecCCCE----
Q 003842          581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQMRFQPHLGR----  651 (792)
Q Consensus       581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~~~~v~~sp~~~~----  651 (792)
                      ||+++ +..+..+..+. .+.++.+.++   .+++++.|+.+++|+++........     .....++.+.+....    
T Consensus       156 wd~~~-~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (368)
T 3mmy_A          156 WDTRS-SNPMMVLQLPE-RCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG  230 (368)
T ss_dssp             ECSSC-SSCSEEEECSS-CEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEE
T ss_pred             EECCC-CcEEEEEecCC-CceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCe
Confidence            99997 56667776554 6777777754   5567888999999999876544322     234556666665544    


Q ss_pred             EEEEEcCCeEEEEECCCC---eEEEEecCCCC------------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 003842          652 YLAAAAENVVSILDAETQ---ACRLSLQGHTK------------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC  715 (792)
Q Consensus       652 lla~s~dg~I~i~D~~t~---~~~~~l~~h~~------------~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~  715 (792)
                      +++++.|+.|++||++..   ..+..+..|..            .|++++|+|++++|++++.| .|++||+.++   .+
T Consensus       231 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---~~  307 (368)
T 3mmy_A          231 FALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---TK  307 (368)
T ss_dssp             EEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EE
T ss_pred             EEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---cE
Confidence            999999999999999987   55677777765            79999999999999999999 9999999876   78


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCCeE---EEEECCCCcEE
Q 003842          716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL---ELWNMSENKTM  758 (792)
Q Consensus       716 i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I---~IwDl~~~~~~  758 (792)
                      +..+..|...|.+++|+|++.+|++++.|+..   .+|+.+....+
T Consensus       308 ~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i  353 (368)
T 3mmy_A          308 LKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYI  353 (368)
T ss_dssp             EEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred             EEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCCcccee
Confidence            88889999999999999999999999998744   44455554444

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.8e-28  Score=262.85  Aligned_cols=286  Identities=17%  Similarity=0.248  Sum_probs=205.9

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|++|+.++++++.+   +|||+.++..                                          .++...
T Consensus        14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------------------------------------~~~~~~   51 (351)
T 3f3f_A           14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS------------------------------------------NWELSD   51 (351)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEEECSSSC------------------------------------------CEEEEE
T ss_pred             eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC------------------------------------------cceecc
Confidence            4578999999998886554   7888765321                                          123556


Q ss_pred             eeecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCC---------ceeEEeccCCCCEEEEEECCC--CCeEEEEe
Q 003842          507 SVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTL---------KSKTNLEEHSSLITDVRFSPS--MPRLATSS  573 (792)
Q Consensus       507 ~l~~H~~~V~~lafsp--dg~~Lasgs~Dg~I~vWdl~t~---------~~~~~l~~h~~~V~~i~fspd--g~~Lasgs  573 (792)
                      .+.+|...|++++|++  |+++|++|+.||.|+|||+.++         +.+..+..|...|++++|+|+  +.+|++++
T Consensus        52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  131 (351)
T 3f3f_A           52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG  131 (351)
T ss_dssp             EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec
Confidence            7889999999999999  6999999999999999999887         557788899999999999999  99999999


Q ss_pred             CCCcEEEEeCCCCCceeEEe-------------cccCCCeEEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCee--EEEe
Q 003842          574 FDKTVRVWDADNPGYSLRTF-------------MGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSC--TRVF  636 (792)
Q Consensus       574 ~Dg~V~IWdl~s~~~~i~~~-------------~~h~~~V~sl~fspd--~~~ll~sgs~Dg~I~iwdl~~~~~--~~~~  636 (792)
                      .||.|++||+++.. .+..+             ..|...|.+++|+|+  ...++++++.|+.+.+|+...++.  +..+
T Consensus       132 ~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  210 (351)
T 3f3f_A          132 NDGILRLYDALEPS-DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL  210 (351)
T ss_dssp             TTCEEEEEECSSTT-CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEEC
T ss_pred             CCCcEEEecCCChH-HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeec
Confidence            99999999998743 22111             157889999999997  345777999999999888887765  3443


Q ss_pred             ---eCCeeEEEEecCC----CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEEC
Q 003842          637 ---KGGTAQMRFQPHL----GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTV  707 (792)
Q Consensus       637 ---~~~~~~v~~sp~~----~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl  707 (792)
                         ...+.+++|+|++    ..+++++.|+.|++||++++........+...+....+.+....++.+..+  ...++.+
T Consensus       211 ~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
T 3f3f_A          211 PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAEL  290 (351)
T ss_dssp             CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------
T ss_pred             CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeee
Confidence               3467889999998    789999999999999999876655555444445555555555555554433  2222333


Q ss_pred             CCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          708 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       708 ~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      ........+..+..|...|.+++|+|++++|++++.||.|+|||+.+++.+
T Consensus       291 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          291 QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             cccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence            222334778888899999999999999999999999999999999987544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=2.9e-29  Score=270.71  Aligned_cols=247  Identities=16%  Similarity=0.257  Sum_probs=197.6

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|++||.++++++.+   +|||+.++..                                            ..+.
T Consensus        16 V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~--------------------------------------------~~~~   51 (316)
T 3bg1_A           16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ--------------------------------------------ILIA   51 (316)
T ss_dssp             EEEEEECGGGCEEEEEETTTEEEEEEEETTEE--------------------------------------------EEEE
T ss_pred             EEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc--------------------------------------------EEEE
Confidence            3468899999999886654   7888764321                                            1345


Q ss_pred             eeecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCC--ceeEEeccCCCCEEEEEECCC--CCeEEEEeCCCcEEE
Q 003842          507 SVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRV  580 (792)
Q Consensus       507 ~l~~H~~~V~~lafsp--dg~~Lasgs~Dg~I~vWdl~t~--~~~~~l~~h~~~V~~i~fspd--g~~Lasgs~Dg~V~I  580 (792)
                      .+++|.+.|++++|++  ++++||+|+.|++|+|||++++  .....+.+|...|++++|+|+  +.+|++|+.|+.|++
T Consensus        52 ~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l  131 (316)
T 3bg1_A           52 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL  131 (316)
T ss_dssp             EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred             EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence            6889999999999986  4899999999999999999887  456678899999999999997  789999999999999


Q ss_pred             EeCCCCCce--eEEecccCCCeEEEEEcCCC----------------CeEEEEEeCCCcEEEEEcCCC---eeEEEee--
Q 003842          581 WDADNPGYS--LRTFMGHSASVMSLDFHPNK----------------DDLICSCDGDGEIRYWSINNG---SCTRVFK--  637 (792)
Q Consensus       581 Wdl~s~~~~--i~~~~~h~~~V~sl~fspd~----------------~~ll~sgs~Dg~I~iwdl~~~---~~~~~~~--  637 (792)
                      ||+......  ...+.+|...|.+++|+|+.                ..+|++|+.|+.|++||++..   +++..+.  
T Consensus       132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h  211 (316)
T 3bg1_A          132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH  211 (316)
T ss_dssp             EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred             EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence            999874322  34567899999999999973                246779999999999999765   3444444  


Q ss_pred             -CCeeEEEEecCC----CEEEEEEcCCeEEEEECCCC---e-EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 003842          638 -GGTAQMRFQPHL----GRYLAAAAENVVSILDAETQ---A-CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV  707 (792)
Q Consensus       638 -~~~~~v~~sp~~----~~lla~s~dg~I~i~D~~t~---~-~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl  707 (792)
                       ..+.+++|+|++    ..|++++.|+.|++||+++.   . ....+..|...|.+++|+|++++|++++.| .|+||+.
T Consensus       212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence             357889999986    78999999999999998762   1 123345688999999999999999999999 9999998


Q ss_pred             CCCCCcceEEEee
Q 003842          708 GSGSEGECVHELS  720 (792)
Q Consensus       708 ~s~~~~~~i~~~~  720 (792)
                      .......++..+.
T Consensus       292 ~~~g~~~~~~~~~  304 (316)
T 3bg1_A          292 SVDGQWVCISDVN  304 (316)
T ss_dssp             CTTSCEEEEEECC
T ss_pred             CCCCcEEEeeecc
Confidence            6443334444443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=3.5e-27  Score=260.24  Aligned_cols=265  Identities=13%  Similarity=0.170  Sum_probs=215.6

Q ss_pred             CCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCC
Q 003842          488 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM  566 (792)
Q Consensus       488 d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~L-asgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg  566 (792)
                      +..+++|++..+   +.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+. .|.+++|+|++
T Consensus        11 d~~v~v~d~~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg   85 (391)
T 1l0q_A           11 SDNISVIDVTSN---KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDG   85 (391)
T ss_dssp             TTEEEEEETTTT---EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS
T ss_pred             CCEEEEEECCCC---eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCC
Confidence            455677777655   4555666665 49999999999977 566689999999999999998887665 89999999999


Q ss_pred             CeEEEE-eCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--CCeeEE
Q 003842          567 PRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQM  643 (792)
Q Consensus       567 ~~Lasg-s~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v  643 (792)
                      ++|+++ +.|+.|++||+.+ +..+..+. +...+.+++|+|+++.++++++.|+.|++||+.+++++..+.  .....+
T Consensus        86 ~~l~~~~~~~~~v~v~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  163 (391)
T 1l0q_A           86 KQVYVTNMASSTLSVIDTTS-NTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGI  163 (391)
T ss_dssp             SEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEE
T ss_pred             CEEEEEECCCCEEEEEECCC-CeEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceE
Confidence            987655 5679999999987 55566655 445789999999998887899999999999999999888765  346778


Q ss_pred             EEecCCCEEE-EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe---CC-eEEEEECCCCCCcceEEE
Q 003842          644 RFQPHLGRYL-AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS---ED-SVRVWTVGSGSEGECVHE  718 (792)
Q Consensus       644 ~~sp~~~~ll-a~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s---~d-~I~IwDl~s~~~~~~i~~  718 (792)
                      +|++++++++ ++..++.|++||+++++.+..+. +...+.+++|+|++++|++++   .+ .|++||+.++   +.+..
T Consensus       164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---~~~~~  239 (391)
T 1l0q_A          164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITAR  239 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEEE
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---eEEEE
Confidence            9999999885 45568999999999998887776 456789999999999888887   45 9999999876   56666


Q ss_pred             eecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCcEE-EEcccC
Q 003842          719 LSCNGNKFHSCVFHPTYPSLL-VIGCYQSLELWNMSENKTM-TLTAHE  764 (792)
Q Consensus       719 ~~~~~~~i~si~fspdg~~L~-sgs~dg~I~IwDl~~~~~~-~~~~h~  764 (792)
                      +..+. .+.+++|+|++++|+ +++.|+.|++||+.+++.+ .+..|.
T Consensus       240 ~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~  286 (391)
T 1l0q_A          240 IPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK  286 (391)
T ss_dssp             EECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             EecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence            66544 578999999999885 5567899999999998877 344443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=3e-29  Score=279.25  Aligned_cols=264  Identities=14%  Similarity=0.107  Sum_probs=180.5

Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE-----EeccCCCCEEEEEECC--------CCCeEEEEe
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-----NLEEHSSLITDVRFSP--------SMPRLATSS  573 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~-----~l~~h~~~V~~i~fsp--------dg~~Lasgs  573 (792)
                      ....|...+...++++++.+||+|+.|++|+|||+.++....     .+.+|.+.|++|+|+|        |+++||+|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s  163 (393)
T 4gq1_A           84 SENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG  163 (393)
T ss_dssp             ECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred             cccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence            344566667777788889999999999999999999876543     3678999999999997        788999999


Q ss_pred             CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEE
Q 003842          574 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL  653 (792)
Q Consensus       574 ~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll  653 (792)
                      .|++|+|||+.+ +..+..+..|...|.+++|+|++..+|++++.|++|++||+++++...........     .     
T Consensus       164 ~D~tv~~Wd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~-----~-----  232 (393)
T 4gq1_A          164 DDCTLIIWRLTD-EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV-----K-----  232 (393)
T ss_dssp             TTSEEEEEEEET-TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C-----S-----
T ss_pred             CCCeEEEEECCC-CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc-----c-----
Confidence            999999999987 55667777899999999999998888999999999999999988765443221100     0     


Q ss_pred             EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc-CCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc------
Q 003842          654 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD-PSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK------  725 (792)
Q Consensus       654 a~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~s-pdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~------  725 (792)
                          ...+.-++...........+|...|.++.|+ ++++.|++++.| .+++||+..+.....   +..+...      
T Consensus       233 ----~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~---l~~~~~~~~~~~~  305 (393)
T 4gq1_A          233 ----NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNE---ISDSTMKLGPKNL  305 (393)
T ss_dssp             ----CCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CC
T ss_pred             ----cceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCce---EeeecCccccEEE
Confidence                0001111111112223345688899999987 799999999999 999999987633222   2222111      


Q ss_pred             ------------eEEEEEeC--CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003842          726 ------------FHSCVFHP--TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFV  788 (792)
Q Consensus       726 ------------i~si~fsp--dg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I  788 (792)
                                  ...+.|++  ++.++++|+.||.|+|||+.++... ....|...|.+++|+|||++||++++||.+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~  383 (393)
T 4gq1_A          306 LPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL  383 (393)
T ss_dssp             SCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred             ccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence                        12233443  3335666778999999999988766 667889999999999999999999988753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-27  Score=260.94  Aligned_cols=246  Identities=20%  Similarity=0.304  Sum_probs=197.3

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|++|+.++++++.+   +|||+...                                            ..+.+.
T Consensus        14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--------------------------------------------~~~~~~   49 (379)
T 3jrp_A           14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------------------------THKLID   49 (379)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEEEETT--------------------------------------------EEEEEE
T ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEecCCC--------------------------------------------cceeee
Confidence            4468899999998876433   77876521                                            123456


Q ss_pred             eeecCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEECCC--CCeEEEEeCCCcEEE
Q 003842          507 SVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRV  580 (792)
Q Consensus       507 ~l~~H~~~V~~lafspd--g~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fspd--g~~Lasgs~Dg~V~I  580 (792)
                      .+.+|...|++++|+++  +++|++|+.||.|+|||+.+++  .+..+..|...|++++|+|+  +.+|++++.||.|++
T Consensus        50 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v  129 (379)
T 3jrp_A           50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV  129 (379)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             EecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEE
Confidence            77899999999999987  9999999999999999999987  77788889999999999999  999999999999999


Q ss_pred             EeCCCCC-ceeEEecccCCCeEEEEEcCC------------CCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEec
Q 003842          581 WDADNPG-YSLRTFMGHSASVMSLDFHPN------------KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQP  647 (792)
Q Consensus       581 Wdl~s~~-~~i~~~~~h~~~V~sl~fspd------------~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp  647 (792)
                      ||+.+.. .....+..|...|.+++|+|.            +..+|++++.||.|++||++++...              
T Consensus       130 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------------  195 (379)
T 3jrp_A          130 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--------------  195 (379)
T ss_dssp             EECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE--------------
T ss_pred             EecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc--------------
Confidence            9998743 344567789999999999995            2334556666666666665543211              


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC---CCEEEEEeCC-eEEEEECCCCCCcceEEEee--c
Q 003842          648 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS---GELLASVSED-SVRVWTVGSGSEGECVHELS--C  721 (792)
Q Consensus       648 ~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd---g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~--~  721 (792)
                                           ...+..+.+|...|.+++|+|+   +.+|++++.| .|++||++++........+.  .
T Consensus       196 ---------------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  254 (379)
T 3jrp_A          196 ---------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK  254 (379)
T ss_dssp             ---------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSC
T ss_pred             ---------------------eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecccc
Confidence                                 1234566789999999999999   8999999999 99999998764433333333  3


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003842          722 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       722 ~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~  754 (792)
                      +...+.+++|+|++++|++++.||.|+|||+..
T Consensus       255 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          255 FPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             CSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            778899999999999999999999999999874

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=2.7e-26  Score=256.68  Aligned_cols=240  Identities=11%  Similarity=0.129  Sum_probs=204.0

Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCC
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNP  586 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~V~IWdl~s~  586 (792)
                      +.+|.+.|.+++|+++++++++++.|+.|++||+++++.+..+..|...+.+++|+|++++|+++ +.|+.|++||+++ 
T Consensus       165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-  243 (433)
T 3bws_A          165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT-  243 (433)
T ss_dssp             HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT-
T ss_pred             ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC-
Confidence            45788999999999999999999999999999999999999999999999999999999988554 5799999999987 


Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEe-------CCCcEEEEEcCCCeeEEEe--eCCeeEEEEecCCCEEEEE-E
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD-------GDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAA-A  656 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs-------~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~lla~-s  656 (792)
                      +..+..+.. ...+.+++|+|++..+++++.       .|+.|++||+.+++.+..+  ......++|+|+++.++++ +
T Consensus       244 ~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~  322 (433)
T 3bws_A          244 KLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM  322 (433)
T ss_dssp             TEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEET
T ss_pred             CcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEec
Confidence            566666654 455999999999886664443       5889999999999887765  4567789999999877655 6


Q ss_pred             cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC---------------C-eEEEEECCCCCCcceEEEee
Q 003842          657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---------------D-SVRVWTVGSGSEGECVHELS  720 (792)
Q Consensus       657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~---------------d-~I~IwDl~s~~~~~~i~~~~  720 (792)
                      .++.|++||+++++.+..+. +...+.+++|+|++++|++++.               | .|++||+.++   +.+..+.
T Consensus       323 ~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---~~~~~~~  398 (433)
T 3bws_A          323 CCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---TVKEFWE  398 (433)
T ss_dssp             TTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---EEEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---cEEEEec
Confidence            79999999999998888776 6778999999999998888876               3 8999999876   5555555


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCC
Q 003842          721 CNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSE  754 (792)
Q Consensus       721 ~~~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~~  754 (792)
                      . ...+.+++|+|++++|++++. |+.|++|++..
T Consensus       399 ~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          399 A-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             C-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             C-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            4 457899999999999998886 99999999864

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=2.6e-26  Score=266.61  Aligned_cols=275  Identities=12%  Similarity=0.108  Sum_probs=226.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCceeEEeccCCCCEEEEEECC----CCCeEEEEeC-CCcEEEEeCCCCC
Q 003842          515 VICCHFSSDGKLLATGGHDKKAVLWHT--DTLKSKTNLEEHSSLITDVRFSP----SMPRLATSSF-DKTVRVWDADNPG  587 (792)
Q Consensus       515 V~~lafspdg~~Lasgs~Dg~I~vWdl--~t~~~~~~l~~h~~~V~~i~fsp----dg~~Lasgs~-Dg~V~IWdl~s~~  587 (792)
                      +.+++|+|||++|++++.|+.|++||+  .+++++.++. +...+..++|+|    ++++|++++. +++|.|||..+ .
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~  258 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-L  258 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-C
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-c
Confidence            889999999999999999999999999  8898888887 455689999999    9999999885 89999999987 6


Q ss_pred             ceeEEecc----------cC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE--Eee--CCeeEEEEecCCCEE
Q 003842          588 YSLRTFMG----------HS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFK--GGTAQMRFQPHLGRY  652 (792)
Q Consensus       588 ~~i~~~~~----------h~-~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~--~~~--~~~~~v~~sp~~~~l  652 (792)
                      +++..+..          |. ..+.++.+++++..++++...++.|.+||+.+.+.+.  .+.  .....+.|+|++.++
T Consensus       259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l  338 (543)
T 1nir_A          259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYF  338 (543)
T ss_dssp             CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEE
T ss_pred             ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEE
Confidence            66666653          22 3789999999999999999999999999998866544  332  345678999999988


Q ss_pred             EEEEc-CCeEEEEECCCCeEEEEecC----CCCCeEEEEEcCC-CCEEEEEe-CC-eEEEEECCCCCC----cceEEEee
Q 003842          653 LAAAA-ENVVSILDAETQACRLSLQG----HTKPIDSVCWDPS-GELLASVS-ED-SVRVWTVGSGSE----GECVHELS  720 (792)
Q Consensus       653 la~s~-dg~I~i~D~~t~~~~~~l~~----h~~~V~sv~~spd-g~~Las~s-~d-~I~IwDl~s~~~----~~~i~~~~  720 (792)
                      ++++. ++.|.+||+++++++..+..    |......+ ++|+ +.+++++. .+ +|.|||+.+...    .+++..+.
T Consensus       339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~  417 (543)
T 1nir_A          339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ  417 (543)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred             EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE
Confidence            87765 88999999999999888874    55444444 4676 66677765 34 999999987322    58899999


Q ss_pred             cCCCceEEEEEeCCCCEEEEEE-------cCCeEEEEECCCCcEE-EE---------cccCCCeEEEEEeCCCCEEEEEe
Q 003842          721 CNGNKFHSCVFHPTYPSLLVIG-------CYQSLELWNMSENKTM-TL---------TAHEGLIAALAVSTETGYVASAS  783 (792)
Q Consensus       721 ~~~~~i~si~fspdg~~L~sgs-------~dg~I~IwDl~~~~~~-~~---------~~h~~~V~sl~fspdg~~LaSgs  783 (792)
                      .+...+..++|+|++++|++++       .+++|.|||+.+++.. ..         ..+...+..+.|+++|++|+++.
T Consensus       418 ~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~  497 (543)
T 1nir_A          418 GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV  497 (543)
T ss_dssp             CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred             cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence            9988889999999999999987       2679999999988765 32         35677899999999999988763


Q ss_pred             -----CCCcEEEeC
Q 003842          784 -----HDKFVKLWK  792 (792)
Q Consensus       784 -----~DG~I~IWd  792 (792)
                           .|+.|.|||
T Consensus       498 ~~~~~~~~~i~v~D  511 (543)
T 1nir_A          498 WNGKNDSSALVVVD  511 (543)
T ss_dssp             ECCTTSCCEEEEEE
T ss_pred             ecCCCCCCeEEEEE
Confidence                 379999997

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=1.5e-26  Score=253.85  Aligned_cols=243  Identities=8%  Similarity=0.041  Sum_probs=181.7

Q ss_pred             EEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEe
Q 003842          538 LWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD  617 (792)
Q Consensus       538 vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs  617 (792)
                      ||++.+...+..+..|...|++++|+||+++|++|+.|+ ++|||+++ .......  +...+..++|.++++.++++++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   78 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHP-VAHIMSQ--EMRHLSKVRMLHRTNYVAFVTG   78 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETT-EEEEEEE--ECSCCCEEEECTTSSEEEEECS
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCC-cceeeee--ecCCeEEEEEcCCCCEEEEEEC
Confidence            567777777778889999999999999999999998876 78999986 3333322  2235778889888887878888


Q ss_pred             CCCcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEE
Q 003842          618 GDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELL  694 (792)
Q Consensus       618 ~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~L  694 (792)
                      .|+.|++||+.+++++..+.  ..+..+.++++  .++ .+.++.|++||+.+. +.+..+..   +...+++++  .++
T Consensus        79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~-~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l  150 (355)
T 3vu4_A           79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIV-VSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL  150 (355)
T ss_dssp             STTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEE-EEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred             CccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEE-EEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence            89999999999999887765  45566777654  343 346889999999987 65555543   444566776  666


Q ss_pred             EEE--eCC-eEEEEECCCCCCc------------c-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCe-EEEEECCCCcE
Q 003842          695 ASV--SED-SVRVWTVGSGSEG------------E-CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS-LELWNMSENKT  757 (792)
Q Consensus       695 as~--s~d-~I~IwDl~s~~~~------------~-~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~-I~IwDl~~~~~  757 (792)
                      +++  +.+ .|++||+.++...            . ++..+.+|...|.+++|+|++.+|++++.|++ |+|||+.++++
T Consensus       151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~  230 (355)
T 3vu4_A          151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL  230 (355)
T ss_dssp             EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred             EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            664  556 9999999875310            1 26778899999999999999999999999998 99999999988


Q ss_pred             E-EEc-c-cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          758 M-TLT-A-HEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       758 ~-~~~-~-h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      + .+. + |...|++++|+|++++|++++.|+.|+|||
T Consensus       231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~  268 (355)
T 3vu4_A          231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE  268 (355)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred             EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence            7 455 4 999999999999999999999999999996

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=1e-25  Score=241.80  Aligned_cols=258  Identities=10%  Similarity=0.018  Sum_probs=185.2

Q ss_pred             CCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCC--
Q 003842          488 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS--  565 (792)
Q Consensus       488 d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspd--  565 (792)
                      ...+++|+..++..++.+.++++|..+|..+.|.||..-|++..-.                 .-+...|+.|+|+||  
T Consensus        62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------------~~~~~~v~sla~spd~~  124 (356)
T 2w18_A           62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG-----------------NLEIREIRALFCSSDDE  124 (356)
T ss_dssp             SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-----------------SSSEEEEEEECC-----
T ss_pred             cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-----------------cccccceEEEEECCCcc
Confidence            3467889999999999999999999999999999986544332210                 113456888999999  


Q ss_pred             --CCeEEEEeCCCcEEEEeCCCCCceeEE-ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeEEE---eeC
Q 003842          566 --MPRLATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRV---FKG  638 (792)
Q Consensus       566 --g~~Lasgs~Dg~V~IWdl~s~~~~i~~-~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~-~~~~~~~---~~~  638 (792)
                        +.++++++.+  ++||++.+ ++.+.. ..+|                      |+.|++|++. +++.+..   +..
T Consensus       125 ~~~~~l~s~g~~--~~v~~l~~-g~lv~ss~~g~----------------------d~~V~~~~~s~dG~~~~s~~~~~~  179 (356)
T 2w18_A          125 SEKQVLLKSGNI--KAVLGLTK-RRLVSSSGTLS----------------------DQQVEVMTFAEDGGGKENQFLMPP  179 (356)
T ss_dssp             -CCEEEEEEEEE--EEEEEETT-TEEEEEESSST----------------------TCEEEEEEECTTSCEEEEEEECCC
T ss_pred             ccccEEEeCCCe--EEEEecCC-CcEEEecccCC----------------------CCcEEEEEECCCCceeeeeccCCC
Confidence              8888887744  77786643 222222 2333                      5555555552 2443332   334


Q ss_pred             CeeEEEEec---CCCEEEEEEcCCeEEEEECCCCeEEEEecCCC---CCeEEEEEcCCCCEE------------EEEeCC
Q 003842          639 GTAQMRFQP---HLGRYLAAAAENVVSILDAETQACRLSLQGHT---KPIDSVCWDPSGELL------------ASVSED  700 (792)
Q Consensus       639 ~~~~v~~sp---~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~---~~V~sv~~spdg~~L------------as~s~d  700 (792)
                      .+..++|++   ++..|++++.|++|+|||+++++++.++.+|.   ..+.+++|+|+|.++            ++|+.|
T Consensus       180 ~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D  259 (356)
T 2w18_A          180 EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV  259 (356)
T ss_dssp             SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred             ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence            566778888   66888888999999999999999999988654   357788999999876            557778


Q ss_pred             -eEEEEECCCCCCcceEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeE-EEEE
Q 003842          701 -SVRVWTVGSGSEGECVHEL-----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIA-ALAV  772 (792)
Q Consensus       701 -~I~IwDl~s~~~~~~i~~~-----~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~-sl~f  772 (792)
                       +|++||..++   +++..+     .+|...+.+..++  +.++++++.|++|+|||+.+++++ ++.+|...+. +++|
T Consensus       260 ~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf  334 (356)
T 2w18_A          260 FQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW  334 (356)
T ss_dssp             EEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE
T ss_pred             cEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE
Confidence             9999999876   444433     2444444444443  788999999999999999999988 6778877655 6899


Q ss_pred             eCCCCEEEEEeCCCcEEEeC
Q 003842          773 STETGYVASASHDKFVKLWK  792 (792)
Q Consensus       773 spdg~~LaSgs~DG~I~IWd  792 (792)
                      +|||++|++|+.|++|||||
T Consensus       335 SPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          335 SGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             CSSSSEEEEECTTSCEEEEE
T ss_pred             CCCCCEEEEEECCCcEEEec
Confidence            99999999999999999996

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.7e-27  Score=255.88  Aligned_cols=221  Identities=11%  Similarity=0.058  Sum_probs=180.3

Q ss_pred             EECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC---------CCe
Q 003842          561 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN---------NGS  631 (792)
Q Consensus       561 ~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~---------~~~  631 (792)
                      .+..++.+|++|+.||.|++||+.+ +..+..+.  ...|.++.|+|+    +++++.|++|++|+..         +++
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~-~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~  115 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKD-SKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNK  115 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESS-SSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCC-CcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcc
Confidence            3445778999999999999999997 55555554  466788889887    6799999999999665         555


Q ss_pred             eEEEee----CCeeEEEEec--CCCEEEEEEcCCeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEE
Q 003842          632 CTRVFK----GGTAQMRFQP--HLGRYLAAAAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVR  703 (792)
Q Consensus       632 ~~~~~~----~~~~~v~~sp--~~~~lla~s~dg~I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~  703 (792)
                      .+..+.    ..+.+++|+|  ++.++++++.|+.|++||+++++.+..+.. |...|.+++|+|++.+|++|+.| .|+
T Consensus       116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~  195 (343)
T 3lrv_A          116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD  195 (343)
T ss_dssp             EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred             eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence            566665    6688999999  999999999999999999999988776643 56689999999999999999999 999


Q ss_pred             EEECCCCCCcceE-EEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc---ccCCCeE--EEEEeCC
Q 003842          704 VWTVGSGSEGECV-HELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT---AHEGLIA--ALAVSTE  775 (792)
Q Consensus       704 IwDl~s~~~~~~i-~~~~~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~---~h~~~V~--sl~fspd  775 (792)
                      |||++++.   .+ ..+.. |...|.+++|+|++.+|++++ ++.|+|||+++.+.+ .+.   .|...+.  +++|+|+
T Consensus       196 iwd~~~~~---~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (343)
T 3lrv_A          196 VYNLSSPD---QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS  271 (343)
T ss_dssp             EEESSCTT---SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred             EEECCCCC---CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence            99998873   33 55666 889999999999999999999 559999999988654 222   2444444  6999999


Q ss_pred             CCEEEEEeC-CCcEEEeC
Q 003842          776 TGYVASASH-DKFVKLWK  792 (792)
Q Consensus       776 g~~LaSgs~-DG~I~IWd  792 (792)
                      +++|++++. |+.|+||+
T Consensus       272 g~~l~~~s~~d~~i~v~~  289 (343)
T 3lrv_A          272 GKNMIAYSNESNSLTIYK  289 (343)
T ss_dssp             SSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEecCCCCcEEEEE
Confidence            999999998 99999994

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7.6e-27  Score=281.95  Aligned_cols=210  Identities=18%  Similarity=0.300  Sum_probs=180.2

Q ss_pred             eeeeeeecCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEECCC--CCeEEEEeCCC
Q 003842          503 KEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPS--MPRLATSSFDK  576 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspd--g~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fspd--g~~Lasgs~Dg  576 (792)
                      +.+..+.+|.+.|++++|+++  +++|++|+.||.|++||+.+++  .+..+..|...|++++|+|+  +.+|++|+.||
T Consensus        44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  123 (753)
T 3jro_A           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG  123 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence            355678899999999999988  9999999999999999999887  77788899999999999999  99999999999


Q ss_pred             cEEEEeCCCCC-ceeEEecccCCCeEEEEEcCC------------CCeEEEEEeCCCcEEEEEcCCC----eeEEEe---
Q 003842          577 TVRVWDADNPG-YSLRTFMGHSASVMSLDFHPN------------KDDLICSCDGDGEIRYWSINNG----SCTRVF---  636 (792)
Q Consensus       577 ~V~IWdl~s~~-~~i~~~~~h~~~V~sl~fspd------------~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~---  636 (792)
                      .|++||+.+.. .....+.+|...|.+++|+|.            +..++++|+.||.|++||++++    .+...+   
T Consensus       124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h  203 (753)
T 3jro_A          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  203 (753)
T ss_dssp             EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence            99999998742 345567789999999999995            2446779999999999999887    334444   


Q ss_pred             eCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCe-----EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 003842          637 KGGTAQMRFQPH---LGRYLAAAAENVVSILDAETQA-----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV  707 (792)
Q Consensus       637 ~~~~~~v~~sp~---~~~lla~s~dg~I~i~D~~t~~-----~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl  707 (792)
                      ...+.+++|+|+   +..+++++.||.|++||++++.     .+.....|...|++++|+|++.+|++++.| .|++||+
T Consensus       204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence            346788999999   8889999999999999998864     333345588899999999999999999998 9999999


Q ss_pred             CCCCC
Q 003842          708 GSGSE  712 (792)
Q Consensus       708 ~s~~~  712 (792)
                      ..+..
T Consensus       284 ~~~~~  288 (753)
T 3jro_A          284 NLEGK  288 (753)
T ss_dssp             CSSSC
T ss_pred             CCCCC
Confidence            86543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.94  E-value=5e-25  Score=247.93  Aligned_cols=207  Identities=20%  Similarity=0.398  Sum_probs=181.3

Q ss_pred             eeeeeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCce-------eEEeccCCCCEEEEEECC-CCCeEEEEe
Q 003842          503 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKS-------KTNLEEHSSLITDVRFSP-SMPRLATSS  573 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~~-------~~~l~~h~~~V~~i~fsp-dg~~Lasgs  573 (792)
                      ..+..+.+|...|++++|+|++. +|++|+.||.|+|||+.++..       ...+..|...|.+++|+| ++.+|++++
T Consensus       172 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~  251 (430)
T 2xyi_A          172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA  251 (430)
T ss_dssp             CCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred             CCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe
Confidence            45567889999999999999998 999999999999999987432       456778999999999999 677999999


Q ss_pred             CCCcEEEEeCCCCC--ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEEee---CCeeEEEEec
Q 003842          574 FDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFK---GGTAQMRFQP  647 (792)
Q Consensus       574 ~Dg~V~IWdl~s~~--~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~~~---~~~~~v~~sp  647 (792)
                      .||.|++||+++..  ..+..+..|...|++|+|+|++.++|++|+.||.|++||++. ...+..+.   ..+.+++|+|
T Consensus       252 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp  331 (430)
T 2xyi_A          252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP  331 (430)
T ss_dssp             TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred             CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence            99999999999753  567778899999999999999988899999999999999998 44455543   5688899999


Q ss_pred             CCC-EEEEEEcCCeEEEEECCC--------------CeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCC
Q 003842          648 HLG-RYLAAAAENVVSILDAET--------------QACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGS  709 (792)
Q Consensus       648 ~~~-~lla~s~dg~I~i~D~~t--------------~~~~~~l~~h~~~V~sv~~spdg~-~Las~s~d-~I~IwDl~s  709 (792)
                      ++. .+++++.|+.|+|||+..              ...+..+.+|...|++++|+|++. +|++++.| .|+||++..
T Consensus       332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            986 577888899999999987              367888889999999999999999 89999988 999999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=8.9e-25  Score=245.21  Aligned_cols=278  Identities=13%  Similarity=0.113  Sum_probs=222.8

Q ss_pred             CCcceec--cCCcceeeeeeeecCCCCeEEEEEcC--------------CCCEEEEEeCC------CeEEEEECCCCcee
Q 003842          490 GGRGMDV--SQGFSFKEANSVRASTSKVICCHFSS--------------DGKLLATGGHD------KKAVLWHTDTLKSK  547 (792)
Q Consensus       490 ~~~~~d~--~~~~~~~~~~~l~~H~~~V~~lafsp--------------dg~~Lasgs~D------g~I~vWdl~t~~~~  547 (792)
                      ..++||+  ..+.. .....+.+|...+.++++++              .+..|+.++.+      +.|++||++. ...
T Consensus        94 ~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~  171 (415)
T 2hqs_A           94 AYQLVDTGGAPGTV-LAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQ  171 (415)
T ss_dssp             EEEEEECSSSTTCE-EEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSC
T ss_pred             EEEEEeCCCCCCCE-EeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCC
Confidence            5677887  55542 12256889999898888875              25666666654      7999999974 557


Q ss_pred             EEeccCCCCEEEEEECCCCCeEEEEeCCC---cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc--E
Q 003842          548 TNLEEHSSLITDVRFSPSMPRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--I  622 (792)
Q Consensus       548 ~~l~~h~~~V~~i~fspdg~~Lasgs~Dg---~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~--I  622 (792)
                      ..+..|...|.+++|+|+|++|++++.|+   .|++||+.+ +.. ..+..|...+.+++|+|+++.++++++.|+.  |
T Consensus       172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t-g~~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i  249 (415)
T 2hqs_A          172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  249 (415)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CcE-EEeecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence            78888999999999999999999999885   999999987 443 4566788899999999999988878877665  9


Q ss_pred             EEEEcCCCeeEEEe--eCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 003842          623 RYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV  697 (792)
Q Consensus       623 ~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~lla~s~d-g--~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~  697 (792)
                      ++||+.++++....  ...+..++|+|++.+|++++.+ +  .|++||+.+++. ..+..+...+.+++|+|+|++|+++
T Consensus       250 ~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~  328 (415)
T 2hqs_A          250 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMV  328 (415)
T ss_dssp             EEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEE
Confidence            99999988765433  2346789999999999988864 4  788889988764 3455567789999999999999887


Q ss_pred             eCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEE
Q 003842          698 SED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAAL  770 (792)
Q Consensus       698 s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~~~~h~~~V~sl  770 (792)
                      +.+    .|++||+.++.   . ..+..+. .+.+++|+|++++|++++.++   .|++||+.++....+..|.+.|.++
T Consensus       329 ~~~~g~~~i~~~d~~~~~---~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~  403 (415)
T 2hqs_A          329 SSNGGQQHIAKQDLATGG---V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFP  403 (415)
T ss_dssp             EECSSCEEEEEEETTTCC---E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEE
T ss_pred             ECcCCceEEEEEECCCCC---E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCC
Confidence            753    79999998763   2 3344443 889999999999999998877   8999999988888899999999999


Q ss_pred             EEeCCCC
Q 003842          771 AVSTETG  777 (792)
Q Consensus       771 ~fspdg~  777 (792)
                      +|+|...
T Consensus       404 ~~~~~~~  410 (415)
T 2hqs_A          404 AWSPYLH  410 (415)
T ss_dssp             EECCCCC
T ss_pred             ccccccc
Confidence            9999754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.93  E-value=1.5e-25  Score=249.41  Aligned_cols=204  Identities=16%  Similarity=0.181  Sum_probs=157.9

Q ss_pred             eeeeeecCCCCeEEEEEcC--------CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC-eEEEEeC
Q 003842          504 EANSVRASTSKVICCHFSS--------DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSF  574 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafsp--------dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~  574 (792)
                      .+..+.+|.+.|.+++|+|        |+++||+|+.|++|+|||+.++..+..+..|...|.+++|+|++. +|++++.
T Consensus       128 ~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~  207 (393)
T 4gq1_A          128 VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER  207 (393)
T ss_dssp             EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEET
T ss_pred             eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCC
Confidence            4456789999999999998        899999999999999999999988888889999999999999875 8999999


Q ss_pred             CCcEEEEeCCCCCcee------------------------EEecccCCCeEEEEEc-CCCCeEEEEEeCCCcEEEEEcCC
Q 003842          575 DKTVRVWDADNPGYSL------------------------RTFMGHSASVMSLDFH-PNKDDLICSCDGDGEIRYWSINN  629 (792)
Q Consensus       575 Dg~V~IWdl~s~~~~i------------------------~~~~~h~~~V~sl~fs-pd~~~ll~sgs~Dg~I~iwdl~~  629 (792)
                      ||+|+|||+.++....                        ....+|...|.++.|. +++. .|++++.|+.|++||+..
T Consensus       208 d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~  286 (393)
T 4gq1_A          208 NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFA  286 (393)
T ss_dssp             TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC--
T ss_pred             CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECcc
Confidence            9999999998743211                        1123677889999997 5654 666999999999999987


Q ss_pred             CeeEEEeeCC---------------------eeEEEEec-CCCEEE-EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEE
Q 003842          630 GSCTRVFKGG---------------------TAQMRFQP-HLGRYL-AAAAENVVSILDAETQACRLSLQGHTKPIDSVC  686 (792)
Q Consensus       630 ~~~~~~~~~~---------------------~~~v~~sp-~~~~ll-a~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~  686 (792)
                      +.....+...                     .....+.+ .++.++ +++.|+.|++||+.+++.+..+..|..+|++|+
T Consensus       287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sva  366 (393)
T 4gq1_A          287 NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFC  366 (393)
T ss_dssp             -----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEE
T ss_pred             CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEE
Confidence            7654433211                     11123333 344444 455699999999999988888888999999999


Q ss_pred             EcCCCCEEEEEeCCeEEEEECC
Q 003842          687 WDPSGELLASVSEDSVRVWTVG  708 (792)
Q Consensus       687 ~spdg~~Las~s~d~I~IwDl~  708 (792)
                      |+|||++||+++++.+.+|.+.
T Consensus       367 fspdG~~LA~as~~Gv~lvrL~  388 (393)
T 4gq1_A          367 WHQDGSHLAIATEGSVLLTRLM  388 (393)
T ss_dssp             ECTTSSEEEEEESSEEEEEEEG
T ss_pred             EcCCCCEEEEEeCCCeEEEEEe
Confidence            9999999999999988888764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1e-24  Score=244.77  Aligned_cols=271  Identities=14%  Similarity=0.158  Sum_probs=215.7

Q ss_pred             CCeEEEEEcCCCC-EEEEEe----CCC----eEEEEEC--CCCcee--EEeccCCCCEEEEEECC--------------C
Q 003842          513 SKVICCHFSSDGK-LLATGG----HDK----KAVLWHT--DTLKSK--TNLEEHSSLITDVRFSP--------------S  565 (792)
Q Consensus       513 ~~V~~lafspdg~-~Lasgs----~Dg----~I~vWdl--~t~~~~--~~l~~h~~~V~~i~fsp--------------d  565 (792)
                      ..|...+|++.|. ++++|+    .||    .|+|||+  .+++.+  ..+.+|...+..+++++              .
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            4577788888775 666776    467    8999999  898877  45888888888777764              2


Q ss_pred             CCeEEEEeCC------CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC---cEEEEEcCCCeeEEEe
Q 003842          566 MPRLATSSFD------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG---EIRYWSINNGSCTRVF  636 (792)
Q Consensus       566 g~~Lasgs~D------g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg---~I~iwdl~~~~~~~~~  636 (792)
                      +..|++++.+      +.|++||++.  .....+..|...|.+++|+|+++.++ +++.|+   .|++||+.++++....
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g--~~~~~l~~~~~~v~~~~~Spdg~~la-~~s~~~~~~~i~~~d~~tg~~~~l~  219 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRSPQPLMSPAWSPDGSKLA-YVTFESGRSALVIQTLANGAVRQVA  219 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTS--CSCEEEEEESSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCC--CCCEEEeCCCCcceeeEEcCCCCEEE-EEEecCCCcEEEEEECCCCcEEEee
Confidence            5566666554      7999999974  45677788999999999999988665 555554   9999999998876543


Q ss_pred             --eCCeeEEEEecCCCEEEEE-EcCC--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEEC
Q 003842          637 --KGGTAQMRFQPHLGRYLAA-AAEN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTV  707 (792)
Q Consensus       637 --~~~~~~v~~sp~~~~lla~-s~dg--~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl  707 (792)
                        ...+..++|+|++.+|+++ +.++  .|++||+++++. ..+..|...+.+++|+|||++|++++.+    .|++||+
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~  298 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI  298 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence              3457789999999988854 4444  599999998876 5677788899999999999998887753    6888898


Q ss_pred             CCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC
Q 003842          708 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH  784 (792)
Q Consensus       708 ~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d---g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~  784 (792)
                      .++.    ...+..+...+..++|+|+|++|++++.+   ..|++||+.+++...+..+. .+.+++|+|||++|++++.
T Consensus       299 ~~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~  373 (415)
T 2hqs_A          299 NGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSS  373 (415)
T ss_dssp             TSSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred             CCCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEc
Confidence            7653    23444566788999999999999998875   58999999999887777665 8999999999999999888


Q ss_pred             CC---cEEEeC
Q 003842          785 DK---FVKLWK  792 (792)
Q Consensus       785 DG---~I~IWd  792 (792)
                      |+   .|++||
T Consensus       374 ~~~~~~l~~~d  384 (415)
T 2hqs_A          374 QGMGSVLNLVS  384 (415)
T ss_dssp             ETTEEEEEEEE
T ss_pred             CCCccEEEEEE
Confidence            77   688885

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=5e-23  Score=222.89  Aligned_cols=267  Identities=10%  Similarity=0.036  Sum_probs=214.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEE-EeCCCcEEEEeC
Q 003842          512 TSKVICCHFSSDGKLLATGGH-------DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKTVRVWDA  583 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~-------Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Las-gs~Dg~V~IWdl  583 (792)
                      ...+..++|+++|++|++++.       ++.|.+||..+++.+..+... ..+.+++|+++++++++ +..++.|.+||+
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            346889999999999988874       568999999999988888653 44788999999996555 455799999999


Q ss_pred             CCCCceeEEecccCCC---------eEEEEEcCCCCeEEEEE-eCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCC
Q 003842          584 DNPGYSLRTFMGHSAS---------VMSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLG  650 (792)
Q Consensus       584 ~s~~~~i~~~~~h~~~---------V~sl~fspd~~~ll~sg-s~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~  650 (792)
                      .+ +..+..+..+...         +.+++|+|+++.+++++ +.++.|.+||+.+++.+..+.   .....++|+|+++
T Consensus       119 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~  197 (353)
T 3vgz_A          119 KT-GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK  197 (353)
T ss_dssp             TT-CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred             CC-CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence            87 5556666544322         78999999998877666 458899999999999888776   2367799999999


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEecC----CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCC
Q 003842          651 RYLAAAAENVVSILDAETQACRLSLQG----HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGN  724 (792)
Q Consensus       651 ~lla~s~dg~I~i~D~~t~~~~~~l~~----h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~  724 (792)
                      +++++..++.|.+||..+++.+..+..    +...+.+++|+|++++|++++.+  .|.+||+.++   +.+..+.... 
T Consensus       198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~-  273 (353)
T 3vgz_A          198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE-  273 (353)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS-
T ss_pred             EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC-
Confidence            999999999999999999988877764    45568889999999977776654  8999999876   4454444333 


Q ss_pred             ceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003842          725 KFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD  785 (792)
Q Consensus       725 ~i~si~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~D  785 (792)
                       ...++|+|+++++++++ .++.|.+||+.+++.+........+.+++|++|+++|+++..+
T Consensus       274 -~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          274 -SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             -CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             -CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence             25689999999877777 5789999999999988555555678999999999977776655

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=4.4e-24  Score=229.15  Aligned_cols=219  Identities=11%  Similarity=0.112  Sum_probs=167.7

Q ss_pred             eeeeecCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe--CCCcE
Q 003842          505 ANSVRASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS--FDKTV  578 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafspd----g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs--~Dg~V  578 (792)
                      +.--.-|...|.+++|+||    +.++++++.+  +.||++.                      +++++.+++  .|+.|
T Consensus       104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~----------------------~g~lv~ss~~g~d~~V  159 (356)
T 2w18_A          104 VALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT----------------------KRRLVSSSGTLSDQQV  159 (356)
T ss_dssp             EEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEET----------------------TTEEEEEESSSTTCEE
T ss_pred             eeeccccccceEEEEECCCccccccEEEeCCCe--EEEEecC----------------------CCcEEEecccCCCCcE
Confidence            3333455678999999999    9999998854  7778643                      333444432  57888


Q ss_pred             EEEeCCCCCceeEEecccCCCeEEEEEcC--CCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC------eeEEEEecCCC
Q 003842          579 RVWDADNPGYSLRTFMGHSASVMSLDFHP--NKDDLICSCDGDGEIRYWSINNGSCTRVFKGG------TAQMRFQPHLG  650 (792)
Q Consensus       579 ~IWdl~s~~~~i~~~~~h~~~V~sl~fsp--d~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~------~~~v~~sp~~~  650 (792)
                      ++|++...+..+..+..|...++.++|++  ++..+|++++.|++|+|||++++++++.+.++      +..++|+|++.
T Consensus       160 ~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~  239 (356)
T 2w18_A          160 EVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGL  239 (356)
T ss_dssp             EEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTE
T ss_pred             EEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCC
Confidence            88888665677777888999999999988  23457789999999999999999999998752      34568999987


Q ss_pred             EEE------------EEEcCCeEEEEECCCCeEEEEe-----cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC
Q 003842          651 RYL------------AAAAENVVSILDAETQACRLSL-----QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE  712 (792)
Q Consensus       651 ~ll------------a~s~dg~I~i~D~~t~~~~~~l-----~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~  712 (792)
                      .++            +++.|++|++||..+++.+..+     .+|...+.+..++  +.++++++.| +|+|||+.++  
T Consensus       240 ~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG--  315 (356)
T 2w18_A          240 LFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG--  315 (356)
T ss_dssp             EEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC--
T ss_pred             EEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC--
Confidence            763            4667899999999999887665     3676666555554  8899999988 9999999887  


Q ss_pred             cceEEEeecCCCceE-EEEEeCCCCEEEEEEcCCeEEEEEC
Q 003842          713 GECVHELSCNGNKFH-SCVFHPTYPSLLVIGCYQSLELWNM  752 (792)
Q Consensus       713 ~~~i~~~~~~~~~i~-si~fspdg~~L~sgs~dg~I~IwDl  752 (792)
                       +++..+.+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus       316 -k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          316 -QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             -cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence             78888888877655 5899999999999999999999996

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=1.3e-23  Score=243.91  Aligned_cols=266  Identities=11%  Similarity=0.060  Sum_probs=212.8

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC--CCCCceeEEeccc
Q 003842          519 HFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA--DNPGYSLRTFMGH  596 (792)
Q Consensus       519 afspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl--~s~~~~i~~~~~h  596 (792)
                      +|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+|++++|++++.|+.|++||+  .+ ...+..+. +
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-~~~~~~i~-~  220 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKE-PTKVAEIK-I  220 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSS-CEEEEEEE-C
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCC-CcEEEEEe-c
Confidence            4889999999999999999999999999999984433 899999999999999999999999999  55 56666666 4


Q ss_pred             CCCeEEEEEcC----CCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--------------CeeEEEEecCCCEEEEEE-c
Q 003842          597 SASVMSLDFHP----NKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------------GTAQMRFQPHLGRYLAAA-A  657 (792)
Q Consensus       597 ~~~V~sl~fsp----d~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------------~~~~v~~sp~~~~lla~s-~  657 (792)
                      ...+..++|+|    +++.+++++..+++|.+||..+++++..+..              .+..+.+++++..+++.. .
T Consensus       221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~  300 (543)
T 1nir_A          221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  300 (543)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence            56689999999    9987776666799999999999998887753              345688999888766655 4


Q ss_pred             CCeEEEEECCCCeEEE--EecCCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCCCcceEEEeec----CCCceEEE
Q 003842          658 ENVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHELSC----NGNKFHSC  729 (792)
Q Consensus       658 dg~I~i~D~~t~~~~~--~l~~h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s~~~~~~i~~~~~----~~~~i~si  729 (792)
                      ++.|.+||..+.+.+.  .+. +...+.+++|+|+|++|++++. + +|.+||+.++   +++..+..    |......+
T Consensus       301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~  376 (543)
T 1nir_A          301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF  376 (543)
T ss_dssp             TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE
T ss_pred             CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc
Confidence            7899999998865332  333 5667889999999998776653 4 9999999887   56665553    33333333


Q ss_pred             EEeCCCCE-EEEEE-cCCeEEEEECCC-------CcEE-EEcccCCCeEEEEEeCCCCEEEEEe-------CCCcEEEeC
Q 003842          730 VFHPTYPS-LLVIG-CYQSLELWNMSE-------NKTM-TLTAHEGLIAALAVSTETGYVASAS-------HDKFVKLWK  792 (792)
Q Consensus       730 ~fspdg~~-L~sgs-~dg~I~IwDl~~-------~~~~-~~~~h~~~V~sl~fspdg~~LaSgs-------~DG~I~IWd  792 (792)
                       ++|++.. ++++. .+++|.|||+.+       .+++ ++..|...+..++|+|++++|++++       .+++|.|||
T Consensus       377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d  455 (543)
T 1nir_A          377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  455 (543)
T ss_dssp             -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred             -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence             5787444 44444 478999999988       6776 7778888889999999999999987       277999996

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=1.4e-23  Score=252.07  Aligned_cols=270  Identities=10%  Similarity=0.066  Sum_probs=203.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003842          513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL  590 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i  590 (792)
                      ..|.+++|||||++|++++. +.|++||+.++.  ....+..|...+.+++|+|||++|++++. +.|++||+.+ +...
T Consensus       109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~-g~~~  185 (741)
T 2ecf_A          109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLAS-GRQM  185 (741)
T ss_dssp             EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTT-TEEE
T ss_pred             cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCC-CCEE
Confidence            34789999999999999986 999999999883  45567778889999999999999999874 5899999987 4444


Q ss_pred             EEecccCCC----------------eEEEEEcCCCCeEEEEEeCCC---------------------------------c
Q 003842          591 RTFMGHSAS----------------VMSLDFHPNKDDLICSCDGDG---------------------------------E  621 (792)
Q Consensus       591 ~~~~~h~~~----------------V~sl~fspd~~~ll~sgs~Dg---------------------------------~  621 (792)
                      .....+...                +.+++|+||++.++++.. |+                                 .
T Consensus       186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~-d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI-DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE-ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE-cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            433333332                478999999987775543 33                                 7


Q ss_pred             EEEEEcCC-CeeEEEee-----CCeeEEEEecCCCEEEEEEc-----CCeEEEEECCCCeEEEEecCCCC----CeEEEE
Q 003842          622 IRYWSINN-GSCTRVFK-----GGTAQMRFQPHLGRYLAAAA-----ENVVSILDAETQACRLSLQGHTK----PIDSVC  686 (792)
Q Consensus       622 I~iwdl~~-~~~~~~~~-----~~~~~v~~sp~~~~lla~s~-----dg~I~i~D~~t~~~~~~l~~h~~----~V~sv~  686 (792)
                      |++||+.+ ++......     ..+..++| |++..|++++.     +..|++||+.++++...+..+..    .+.+++
T Consensus       265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  343 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR  343 (741)
T ss_dssp             EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred             EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence            89999998 87655432     23567899 99999988765     46899999999988776665443    456899


Q ss_pred             EcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEE-EEeCCCCEEEEEEcC-C--eEEEEECCC-Cc-EEE
Q 003842          687 WDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC-VFHPTYPSLLVIGCY-Q--SLELWNMSE-NK-TMT  759 (792)
Q Consensus       687 ~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si-~fspdg~~L~sgs~d-g--~I~IwDl~~-~~-~~~  759 (792)
                      |+|||+++++++.+ .++||.+....  . ...+..+...+..+ .|+|+++.|++.+.+ +  .++||++.. +. ...
T Consensus       344 ~spdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~  420 (741)
T 2ecf_A          344 FLDDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQR  420 (741)
T ss_dssp             ECTTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEE
T ss_pred             ECCCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeee
Confidence            99999988888877 67777765321  3 56677777778777 599999988766554 4  889998753 33 334


Q ss_pred             EcccCCCeEEEEEeCCCCEEEEEeCC----CcEEEe
Q 003842          760 LTAHEGLIAALAVSTETGYVASASHD----KFVKLW  791 (792)
Q Consensus       760 ~~~h~~~V~sl~fspdg~~LaSgs~D----G~I~IW  791 (792)
                      +.. ...+.+++|+||+++|+....+    +.+.+|
T Consensus       421 l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~  455 (741)
T 2ecf_A          421 LSK-APGMHSASFARNASVYVDSWSNNSTPPQIELF  455 (741)
T ss_dssp             CCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             ccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence            443 6778999999999988876543    345555

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=9.7e-24  Score=253.37  Aligned_cols=274  Identities=12%  Similarity=0.109  Sum_probs=212.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CC-----eEEEEECCCCceeEEeccCCC------------------------CEEEEE
Q 003842          512 TSKVICCHFSSDGKLLATGGH-DK-----KAVLWHTDTLKSKTNLEEHSS------------------------LITDVR  561 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~-Dg-----~I~vWdl~t~~~~~~l~~h~~------------------------~V~~i~  561 (792)
                      ...|.+++|||||++|++++. |+     .|++||+.+++....+..+..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456999999999999999998 88     899999999988777765433                        388999


Q ss_pred             ECCCCCeEEEEeCCCcEEEEeCCCCC-ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC-
Q 003842          562 FSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-  639 (792)
Q Consensus       562 fspdg~~Lasgs~Dg~V~IWdl~s~~-~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-  639 (792)
                      |+|||++|++++. +.|++||+.++. ..+..+..|...+.+++|+|||+.+++ ++ ++.|++||+.+++........ 
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~-~~-~~~i~~~d~~~g~~~~~~~~~~  192 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSF-IR-GRNLWVIDLASGRQMQLTADGS  192 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEE-EE-TTEEEEEETTTTEEEECCCCCC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEE-Ee-CCcEEEEecCCCCEEEeccCCc
Confidence            9999999999987 899999998731 034556678888999999999986664 44 569999999998876654322 


Q ss_pred             ------------------eeEEEEecCCCEEEEEEcCC---------------------------------eEEEEECCC
Q 003842          640 ------------------TAQMRFQPHLGRYLAAAAEN---------------------------------VVSILDAET  668 (792)
Q Consensus       640 ------------------~~~v~~sp~~~~lla~s~dg---------------------------------~I~i~D~~t  668 (792)
                                        ...+.|+|++.+|++++.|+                                 .|++||+.+
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~  272 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE  272 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred             cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence                              36689999999999987765                                 889999998


Q ss_pred             -CeEEEEec--CCCCCeEEEEEcCCCCEEEEEeC-----C-eEEEEECCCCCCcceEEEeecCCC----ceEEEEEeCCC
Q 003842          669 -QACRLSLQ--GHTKPIDSVCWDPSGELLASVSE-----D-SVRVWTVGSGSEGECVHELSCNGN----KFHSCVFHPTY  735 (792)
Q Consensus       669 -~~~~~~l~--~h~~~V~sv~~spdg~~Las~s~-----d-~I~IwDl~s~~~~~~i~~~~~~~~----~i~si~fspdg  735 (792)
                       ++......  .|...+.+++| |||++|++++.     + .|++||+.++.   +...+..+..    .+..++|+|||
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~spdg  348 (741)
T 2ecf_A          273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---QRVLAHETSPTWVPLHNSLRFLDDG  348 (741)
T ss_dssp             TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---EEEEEEEECSSCCCCCSCCEECTTS
T ss_pred             CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---eEEEEEcCCCCcCCcCCceEECCCC
Confidence             87655443  36778999999 99999887653     3 79999998874   3333333222    34678999999


Q ss_pred             CEEEEEEcCCeEEEEECC-CCcEEEEcccCCCeEEE-EEeCCCCEEEEE-eCCC--cEEEeC
Q 003842          736 PSLLVIGCYQSLELWNMS-ENKTMTLTAHEGLIAAL-AVSTETGYVASA-SHDK--FVKLWK  792 (792)
Q Consensus       736 ~~L~sgs~dg~I~IwDl~-~~~~~~~~~h~~~V~sl-~fspdg~~LaSg-s~DG--~I~IWd  792 (792)
                      +++++++.++.++||.+. ++....+..|...|..+ .|+||+++|+.. +.|+  .++||+
T Consensus       349 ~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          349 SILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             CEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred             eEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence            988888888876666554 23355677788888887 599999977654 4455  888984

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=1.2e-22  Score=218.52  Aligned_cols=272  Identities=9%  Similarity=0.102  Sum_probs=201.1

Q ss_pred             EEEcCCCCE-EEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCceeEEecc
Q 003842          518 CHFSSDGKL-LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMG  595 (792)
Q Consensus       518 lafspdg~~-Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~-Dg~V~IWdl~s~~~~i~~~~~  595 (792)
                      ..|..++++ +++++.++.|.+||+++++.+..+..+...+ +++|+|++++|++++. ++.|++||+.+.......+..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            345665555 6677789999999999999988888777777 9999999997766665 889999999874332666666


Q ss_pred             cCCCeEEEEEcCCCCeEEEEEeCC-C--cEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEc-CCe-EEEEECCC
Q 003842          596 HSASVMSLDFHPNKDDLICSCDGD-G--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENV-VSILDAET  668 (792)
Q Consensus       596 h~~~V~sl~fspd~~~ll~sgs~D-g--~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~-dg~-I~i~D~~t  668 (792)
                      +...+.+++|+|+++.++ ++..+ +  .|++||+.+++.+..+..  ....++|+|+++++++++. ++. |.+|++..
T Consensus        82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            666666699999988776 54444 3  899999999998877653  4578999999987776654 577 99999876


Q ss_pred             CeEE----EEecCCCCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003842          669 QACR----LSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG  742 (792)
Q Consensus       669 ~~~~----~~l~~h~~~V~sv~~spdg~~Las~s-~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs  742 (792)
                      ...+    .........+.+++|+|+|++|++++ .+ .|++||+.++.....+..+.. ...+..++|+|++++|++++
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~  239 (331)
T 3u4y_A          161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLT  239 (331)
T ss_dssp             TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEEC
T ss_pred             CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEE
Confidence            4322    12223445689999999999766655 44 899999987754222555553 45678899999999887776


Q ss_pred             c-CCeEEEEECCCCcEEE---Eccc----C---CCeEEEEEeCCCCEEEEEeC-CCcEEEeC
Q 003842          743 C-YQSLELWNMSENKTMT---LTAH----E---GLIAALAVSTETGYVASASH-DKFVKLWK  792 (792)
Q Consensus       743 ~-dg~I~IwDl~~~~~~~---~~~h----~---~~V~sl~fspdg~~LaSgs~-DG~I~IWd  792 (792)
                      . ++.|.+||+.+++...   +..+    .   ..+.+++|+||+++|++++. ++.|+|||
T Consensus       240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT  301 (331)
T ss_dssp             SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence            4 5789999999988731   1111    1   22356899999998876655 56999996

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=9.3e-23  Score=219.27  Aligned_cols=265  Identities=11%  Similarity=0.137  Sum_probs=191.8

Q ss_pred             EEEEEeCCCeEEEEECC-CCce-eEEeccCCCCEEEEEECCCCCeEEEEeCC-CcEEEEeCC--CCC-ceeEEecccCCC
Q 003842          526 LLATGGHDKKAVLWHTD-TLKS-KTNLEEHSSLITDVRFSPSMPRLATSSFD-KTVRVWDAD--NPG-YSLRTFMGHSAS  599 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~-t~~~-~~~l~~h~~~V~~i~fspdg~~Lasgs~D-g~V~IWdl~--s~~-~~i~~~~~h~~~  599 (792)
                      ++++++.|+.|++||++ ++.. ......+...+.+++|+|++++|++++.+ +.|++|+++  ++. ..+..+..+. .
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~   85 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S   85 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence            34444789999999996 3322 22223577789999999999999888886 999999998  322 1233444333 7


Q ss_pred             eEEEEEcCCCCeEEEEEeCCCcEEEEEcC---CCeeEEEee--CCeeEEEEecCCCEEEEEE-cCCeEEEEECCC-CeEE
Q 003842          600 VMSLDFHPNKDDLICSCDGDGEIRYWSIN---NGSCTRVFK--GGTAQMRFQPHLGRYLAAA-AENVVSILDAET-QACR  672 (792)
Q Consensus       600 V~sl~fspd~~~ll~sgs~Dg~I~iwdl~---~~~~~~~~~--~~~~~v~~sp~~~~lla~s-~dg~I~i~D~~t-~~~~  672 (792)
                      +.+++|+|++..+++++..++.|++||+.   ..+.+..+.  ..+..++|+|++.++++++ .++.|.+||+.+ ++..
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  165 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  165 (343)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence            88999999998888777779999999994   334444443  3467799999999998888 799999999987 6543


Q ss_pred             E----EecC-CCCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCC-CCcceEEEee---cC---CCceEEEEEeCCCCEE
Q 003842          673 L----SLQG-HTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSG-SEGECVHELS---CN---GNKFHSCVFHPTYPSL  738 (792)
Q Consensus       673 ~----~l~~-h~~~V~sv~~spdg~~Las~s-~d-~I~IwDl~s~-~~~~~i~~~~---~~---~~~i~si~fspdg~~L  738 (792)
                      .    .+.. ....+.+++|+|++++|++++ .+ .|++||+... .....+..+.   ..   ...+..++|+|++++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l  245 (343)
T 1ri6_A          166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL  245 (343)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred             eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE
Confidence            2    2222 345788999999999776665 45 9999999642 1122222222   11   2356789999999988


Q ss_pred             EEEE-cCCeEEEEECC--CCc--EE-EEcccCCCeEEEEEeCCCCEEEEEe-CCCcEEEeC
Q 003842          739 LVIG-CYQSLELWNMS--ENK--TM-TLTAHEGLIAALAVSTETGYVASAS-HDKFVKLWK  792 (792)
Q Consensus       739 ~sgs-~dg~I~IwDl~--~~~--~~-~~~~h~~~V~sl~fspdg~~LaSgs-~DG~I~IWd  792 (792)
                      ++++ .++.|++||+.  ++.  .+ .+..+. .+.+++|+|++++|++++ .|+.|.||+
T Consensus       246 ~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          246 YACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             EEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             EEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEE
Confidence            8666 67899999998  332  33 233333 489999999999888887 589999993

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=3.8e-23  Score=258.43  Aligned_cols=289  Identities=10%  Similarity=0.028  Sum_probs=229.4

Q ss_pred             CCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEeccCCCCEEEEEECCCCC
Q 003842          489 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMP  567 (792)
Q Consensus       489 ~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t-~~~~~~l~~h~~~V~~i~fspdg~  567 (792)
                      ...++|....+   .....+.+|...|.+++|+++ .++++++.|+.+.||.++. +.....+..|. .+.+++|+|||+
T Consensus       183 ~~~~lw~~~~~---~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~  257 (1045)
T 1k32_A          183 TRGKIWIEVNS---GAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGR  257 (1045)
T ss_dssp             TCCEEEEEEET---TEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSS
T ss_pred             CcCCEEEECCC---CCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCC
Confidence            34555554333   344556899999999999998 6777888889999998753 44556666665 467789999999


Q ss_pred             eEEEEeCCCcEEEEeCCCCCceeEEecc-----------cCCCeEEEEEc-CCCCeEEEEEeCCCcEEEEEcCCCeeEEE
Q 003842          568 RLATSSFDKTVRVWDADNPGYSLRTFMG-----------HSASVMSLDFH-PNKDDLICSCDGDGEIRYWSINNGSCTRV  635 (792)
Q Consensus       568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~-----------h~~~V~sl~fs-pd~~~ll~sgs~Dg~I~iwdl~~~~~~~~  635 (792)
                      +|+++ .++.|++||+..  ..+..+..           |...|.+++|+ |++..+++++  ++.|++|++..+.....
T Consensus       258 ~la~~-~~~~i~~~d~~~--~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~  332 (1045)
T 1k32_A          258 RILFS-KGGSIYIFNPDT--EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKV  332 (1045)
T ss_dssp             CEEEE-ETTEEEEECTTT--CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEEC
T ss_pred             EEEEE-eCCEEEEecCCc--eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEc
Confidence            99888 488999999943  33335444           34468999999 9988776544  88999999988775543


Q ss_pred             ee--C-CeeEEEEecCCCEEEEEEcCCeEE-EEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003842          636 FK--G-GTAQMRFQPHLGRYLAAAAENVVS-ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG  710 (792)
Q Consensus       636 ~~--~-~~~~v~~sp~~~~lla~s~dg~I~-i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~  710 (792)
                      ..  . .+..+.|+ ++..+++++.++.|. +||+.+++.... .+|...+.+++|+|||++|++++.+ .|++||+.++
T Consensus       333 ~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg  410 (1045)
T 1k32_A          333 PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG  410 (1045)
T ss_dssp             SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC
Confidence            22  2 45668899 888899888888898 999988766543 3788899999999999999999988 9999999876


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC----------eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEE
Q 003842          711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----------SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVA  780 (792)
Q Consensus       711 ~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg----------~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~La  780 (792)
                         .....+..+...+..++|+|||++|++++.++          .|++||+.+++...+..|...+.+++|+|||++|+
T Consensus       411 ---~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~  487 (1045)
T 1k32_A          411 ---KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLY  487 (1045)
T ss_dssp             ---CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEE
T ss_pred             ---ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEE
Confidence               44555556778889999999999999887754          89999999998778888999999999999999999


Q ss_pred             EEeCCCcEEEeC
Q 003842          781 SASHDKFVKLWK  792 (792)
Q Consensus       781 Sgs~DG~I~IWd  792 (792)
                      +++.++..++|+
T Consensus       488 ~~s~~~~~~~~~  499 (1045)
T 1k32_A          488 YLSYRSLDPSPD  499 (1045)
T ss_dssp             EEESCCCCCEEC
T ss_pred             EEecccCCcCcc
Confidence            999988877774

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=5.8e-22  Score=213.15  Aligned_cols=262  Identities=13%  Similarity=0.116  Sum_probs=192.8

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCce-eEEeccCCCCEEEEEECCCCCeEEEEeCCC---cEEEEeCC
Q 003842          510 ASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSMPRLATSSFDK---TVRVWDAD  584 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~-Dg~I~vWdl~t~~~-~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg---~V~IWdl~  584 (792)
                      .+...+ +++|+|||++|++++. ++.|++||+.+++. ...+..+...+.+++|+|++++|+++..++   .|++||+.
T Consensus        38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~  116 (331)
T 3u4y_A           38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL  116 (331)
T ss_dssp             CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT
T ss_pred             ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC
Confidence            344556 9999999997777665 89999999999988 777777777666699999999999665553   89999998


Q ss_pred             CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc-EEEEEcCCCeeEE-----Ee--eCCeeEEEEecCCCEEEEEE
Q 003842          585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTR-----VF--KGGTAQMRFQPHLGRYLAAA  656 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~-I~iwdl~~~~~~~-----~~--~~~~~~v~~sp~~~~lla~s  656 (792)
                      + +..+..+.. ...+.+++|+|+++.+++++..++. |.+|++.....+.     .+  ......++|+|+++++++++
T Consensus       117 ~-~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~  194 (331)
T 3u4y_A          117 K-NKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVAN  194 (331)
T ss_dssp             T-TEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEE
T ss_pred             C-CCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEe
Confidence            7 555555553 4557899999999888888887788 9999998644321     11  13467799999999877766


Q ss_pred             c-CCeEEEEECCCCeE---EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecC----CCc-
Q 003842          657 A-ENVVSILDAETQAC---RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN----GNK-  725 (792)
Q Consensus       657 ~-dg~I~i~D~~t~~~---~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~----~~~-  725 (792)
                      . ++.|.+||+++++.   +..+.. ...+.+++|+|+|++|++++.+  .|.+||+.++.. ..+..+...    ... 
T Consensus       195 ~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~  272 (331)
T 3u4y_A          195 LIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPL  272 (331)
T ss_dssp             TTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCGGG
T ss_pred             CCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCCCc
Confidence            4 78999999998887   776664 3667889999999988776654  899999987632 123333322    112 


Q ss_pred             --eEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEEcccCCCeEEEEEeCCC
Q 003842          726 --FHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTET  776 (792)
Q Consensus       726 --i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg  776 (792)
                        ...++|+|++++|++++.+ +.|.+||+.+.....+...+..-....++|++
T Consensus       273 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~g~~~~~~~~~  326 (331)
T 3u4y_A          273 FGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAGIEANGGIAICHPDK  326 (331)
T ss_dssp             TTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTTCCCBSCEEECCCC-
T ss_pred             ccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceecccccCCeEEECCcc
Confidence              2458999999998877765 59999999887665554444333333344443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=7.6e-23  Score=214.08  Aligned_cols=255  Identities=12%  Similarity=0.077  Sum_probs=192.4

Q ss_pred             CCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEeccC-CCCEEEEEEC
Q 003842          486 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEH-SSLITDVRFS  563 (792)
Q Consensus       486 ~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t-~~~~~~l~~h-~~~V~~i~fs  563 (792)
                      ..+..+.+|++..+    ....+..|...|.+++|+|||++|++++ ++.|++||+.+ ++....+..+ ...|.+++|+
T Consensus        19 ~~~~~i~~~d~~~~----~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           19 SMRSSIEIFNIRTR----KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS   93 (297)
T ss_dssp             CCCEEEEEEETTTT----EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred             CcceeEEEEeCCCC----ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence            34455566766554    2345667889999999999999999987 88999999999 8877766665 4778999999


Q ss_pred             CCCCeEEEEe--CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCee
Q 003842          564 PSMPRLATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA  641 (792)
Q Consensus       564 pdg~~Lasgs--~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~  641 (792)
                      |++++|++++  .++.+.||.++........+..+. .+.+++|+|++..++++++.|+.+++|+++..           
T Consensus        94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~-----------  161 (297)
T 2ojh_A           94 PDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID-----------  161 (297)
T ss_dssp             TTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETT-----------
T ss_pred             CCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECC-----------
Confidence            9999999998  445566666543333445555443 48899999999888878888888888875321           


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCCCcceEEEe
Q 003842          642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHEL  719 (792)
Q Consensus       642 ~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s~~~~~~i~~~  719 (792)
                                                +++ ...+..+...+.+++|+|++++|++++. + .++||++....  ..+..+
T Consensus       162 --------------------------~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~  212 (297)
T 2ojh_A          162 --------------------------SGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERI  212 (297)
T ss_dssp             --------------------------TCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEEC
T ss_pred             --------------------------CCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEE
Confidence                                      111 1223346677899999999998887664 5 88888876321  345666


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcC-----------CeEEEEECCCCcEE---EEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003842          720 SCNGNKFHSCVFHPTYPSLLVIGCY-----------QSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHD  785 (792)
Q Consensus       720 ~~~~~~i~si~fspdg~~L~sgs~d-----------g~I~IwDl~~~~~~---~~~~h~~~V~sl~fspdg~~LaSgs~D  785 (792)
                      ..+...+..++|+|++++|++++.+           +.|++||+.+++..   .+.+|...|.+++|+|++++|++++.|
T Consensus       213 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          213 TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            6677788999999999999988876           46999999988754   344788899999999999999888776


Q ss_pred             C
Q 003842          786 K  786 (792)
Q Consensus       786 G  786 (792)
                      .
T Consensus       293 ~  293 (297)
T 2ojh_A          293 P  293 (297)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=5.8e-22  Score=213.06  Aligned_cols=285  Identities=11%  Similarity=0.064  Sum_probs=199.2

Q ss_pred             CCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEECC--CCc--eeEEeccCCCCEEEEEEC
Q 003842          489 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-KKAVLWHTD--TLK--SKTNLEEHSSLITDVRFS  563 (792)
Q Consensus       489 ~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~D-g~I~vWdl~--t~~--~~~~l~~h~~~V~~i~fs  563 (792)
                      ..+.+|++.....++.+.. ..|...+.+++|+|+|++|++++.+ +.|.+|+++  +++  .+..+..+. .+.+++|+
T Consensus        15 ~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s   92 (343)
T 1ri6_A           15 QQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTD   92 (343)
T ss_dssp             TEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEEC
T ss_pred             CeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEc
Confidence            3455666643333333333 3477789999999999999998886 999999997  554  334454444 78999999


Q ss_pred             CCCCeEEEEeC-CCcEEEEeCCCC--CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEE----E
Q 003842          564 PSMPRLATSSF-DKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTR----V  635 (792)
Q Consensus       564 pdg~~Lasgs~-Dg~V~IWdl~s~--~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~----~  635 (792)
                      |++++|++++. ++.|++||+..+  ...+..+. ....+.+++|+|+++.+++++..++.|++||+.+ ++...    .
T Consensus        93 ~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  171 (343)
T 1ri6_A           93 HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE  171 (343)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccc
Confidence            99998877665 888999999521  22333443 3446889999999987776665899999999987 65432    1


Q ss_pred             ee----CCeeEEEEecCCCEEEEEE-cCCeEEEEECCC--CeE--EEEec---CC---CCCeEEEEEcCCCCEEEEEe-C
Q 003842          636 FK----GGTAQMRFQPHLGRYLAAA-AENVVSILDAET--QAC--RLSLQ---GH---TKPIDSVCWDPSGELLASVS-E  699 (792)
Q Consensus       636 ~~----~~~~~v~~sp~~~~lla~s-~dg~I~i~D~~t--~~~--~~~l~---~h---~~~V~sv~~spdg~~Las~s-~  699 (792)
                      +.    .....++|+|++.++++++ .++.|.+||++.  ++.  ...+.   ..   ...+.+++|+|+|++|+++. .
T Consensus       172 ~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~  251 (343)
T 1ri6_A          172 VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT  251 (343)
T ss_dssp             EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred             cccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC
Confidence            21    2456789999999887776 689999999954  332  22222   11   23567899999999887555 4


Q ss_pred             C-eEEEEECCCC-CCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--ECCCCcEE--EEcccCCCeEEEEE
Q 003842          700 D-SVRVWTVGSG-SEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELW--NMSENKTM--TLTAHEGLIAALAV  772 (792)
Q Consensus       700 d-~I~IwDl~s~-~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~Iw--Dl~~~~~~--~~~~h~~~V~sl~f  772 (792)
                      + .|++||+... .....+..+..+.. +..++|+|++++|++++ .++.|.+|  |..+++..  ..........+++|
T Consensus       252 ~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~  330 (343)
T 1ri6_A          252 ASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVV  330 (343)
T ss_dssp             TTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEE
T ss_pred             CCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEE
Confidence            5 9999999732 22345555554444 88999999999999888 57899999  44566543  22222345678888


Q ss_pred             eCCCC
Q 003842          773 STETG  777 (792)
Q Consensus       773 spdg~  777 (792)
                      .++.+
T Consensus       331 ~~~~~  335 (343)
T 1ri6_A          331 NAHEG  335 (343)
T ss_dssp             EEEC-
T ss_pred             EcccC
Confidence            77654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=4e-22  Score=213.78  Aligned_cols=260  Identities=12%  Similarity=0.090  Sum_probs=202.8

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEeccCCC--CEEEEEECCCCCeE-EEEeCCCcEEEEeCCCCCceeEEecc-c----
Q 003842          525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSS--LITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMG-H----  596 (792)
Q Consensus       525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~--~V~~i~fspdg~~L-asgs~Dg~V~IWdl~s~~~~i~~~~~-h----  596 (792)
                      ++|++++.++.|++||+.+++.+..+.....  .+.+++|+|++++| ++++.++.|.+||+.+ +..+..+.. +    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~   80 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEcCCcccc
Confidence            4789999999999999999998888764332  48899999999866 4556678999999987 455554442 2    


Q ss_pred             CCCeEEEEEcCCCCeEEEEEe-----------CCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEcCCeEEE
Q 003842          597 SASVMSLDFHPNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSI  663 (792)
Q Consensus       597 ~~~V~sl~fspd~~~ll~sgs-----------~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~dg~I~i  663 (792)
                      ...+.+++|+|+++.++++..           .++.|++||+.+++.+..+..  ....++|+|++++++++  ++.|++
T Consensus        81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence            225778999999887665431           479999999999988777653  45678999999988887  689999


Q ss_pred             EECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------------------------eEEEEECCCCCCcceEEE
Q 003842          664 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------------------------SVRVWTVGSGSEGECVHE  718 (792)
Q Consensus       664 ~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-------------------------~I~IwDl~s~~~~~~i~~  718 (792)
                      ||+.+++.+..+..+.. ...+.|+|++++|+..+.+                         .|.+||+.+++..  ...
T Consensus       159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~  235 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MRE  235 (337)
T ss_dssp             EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEE
T ss_pred             EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--Eee
Confidence            99999998877765431 1123789999877655433                         2689999876432  334


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          719 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       719 ~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +..+...+..++|+|++++|+++  ++.|++||+.+++.+........+.+++|+||+++|++++.|+.|++||
T Consensus       236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d  307 (337)
T 1pby_B          236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence            45566678899999999999888  6899999999998875554556789999999999999999999999996

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=2.8e-22  Score=250.55  Aligned_cols=287  Identities=10%  Similarity=0.089  Sum_probs=225.4

Q ss_pred             CCcceeccCCcceeeeeeeecCCCCe-------EEEEEcCCCCEEEEEeCC------CeEEEEECCCCcee---------
Q 003842          490 GGRGMDVSQGFSFKEANSVRASTSKV-------ICCHFSSDGKLLATGGHD------KKAVLWHTDTLKSK---------  547 (792)
Q Consensus       490 ~~~~~d~~~~~~~~~~~~l~~H~~~V-------~~lafspdg~~Lasgs~D------g~I~vWdl~t~~~~---------  547 (792)
                      .+.+|++..+    ....+..|...+       .+++|+|||+++++++.+      ..|++||+.+++..         
T Consensus        81 ~i~~~d~~~g----~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~  156 (1045)
T 1k32_A           81 DLYFYNGENG----EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATH  156 (1045)
T ss_dssp             EEEEEETTTT----EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSE
T ss_pred             eEEEEECCCC----CeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcce
Confidence            3455665543    356788898888       999999999977777754      45888887654422         


Q ss_pred             ----------------------------------------EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003842          548 ----------------------------------------TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG  587 (792)
Q Consensus       548 ----------------------------------------~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~  587 (792)
                                                              ..+.+|...+.++.|+++ .++++++.|+.+.||+++..+
T Consensus       157 ~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g  235 (1045)
T 1k32_A          157 ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDG  235 (1045)
T ss_dssp             EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTS
T ss_pred             eeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCC
Confidence                                                    123456778889999888 677778888999999887545


Q ss_pred             ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--------------CeeEEEEe-cCCCEE
Q 003842          588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------------GTAQMRFQ-PHLGRY  652 (792)
Q Consensus       588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------------~~~~v~~s-p~~~~l  652 (792)
                      .....+..|. .+..++|+|++..++++  .++.|++||+...... .+..              .+..++|+ |++..+
T Consensus       236 ~~~~~l~~~~-~~~~~~~SpDG~~la~~--~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~l  311 (1045)
T 1k32_A          236 KDLRKHTSFT-DYYPRHLNTDGRRILFS--KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLI  311 (1045)
T ss_dssp             CSCEECCCCC-SSCEEEEEESSSCEEEE--ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCE
T ss_pred             CcceEecCCC-CcceeeEcCCCCEEEEE--eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEE
Confidence            5566666665 46678999999876644  4899999999554443 4443              47889999 999888


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC-eEE-EEECCCCCCcceEEEeecCCCceEEE
Q 003842          653 LAAAAENVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED-SVR-VWTVGSGSEGECVHELSCNGNKFHSC  729 (792)
Q Consensus       653 la~s~dg~I~i~D~~t~~~~~~l~~h~~-~V~sv~~spdg~~Las~s~d-~I~-IwDl~s~~~~~~i~~~~~~~~~i~si  729 (792)
                      ++++ ++.|++|++.++.... +..|.. .+.+++|+ ||+.|++++.+ .|. +||+..+   . ...+..+...+..+
T Consensus       312 a~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~---~-~~~l~~~~~~~~~~  384 (1045)
T 1k32_A          312 AFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG---K-AEKFEENLGNVFAM  384 (1045)
T ss_dssp             EEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC---C-EEECCCCCCSEEEE
T ss_pred             EEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC---C-ceEecCCccceeee
Confidence            8877 8899999998887554 566777 89999999 99999998888 888 9998765   2 23344667789999


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc-ccCCCeEEEEEeCCCCEEEEEeCCC----------cEEEeC
Q 003842          730 VFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-AHEGLIAALAVSTETGYVASASHDK----------FVKLWK  792 (792)
Q Consensus       730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~-~h~~~V~sl~fspdg~~LaSgs~DG----------~I~IWd  792 (792)
                      +|+|||++|++++.++.|++||+.+++...+. .|...|.+++|+|||++|++++.++          .|++||
T Consensus       385 ~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d  458 (1045)
T 1k32_A          385 GVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD  458 (1045)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred             EECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence            99999999999999999999999999887554 8999999999999999999887754          899996

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=1.2e-22  Score=242.90  Aligned_cols=268  Identities=9%  Similarity=0.081  Sum_probs=189.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCceeEEec---cCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          514 KVICCHFSSDGKLLATGGHD---------KKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~D---------g~I~vWdl~t~~~~~~l~---~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      .|.+++|||||++||+++.+         +.|++||+++++. ..+.   .|...+.+++|+|||++|++++. +.|++|
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~  139 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC  139 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence            48899999999999999864         7888999998876 3333   45556899999999999999986 789999


Q ss_pred             eCCCCCceeEEecccCCC------------------eEEEEEcCCCCeEEEEEeCC------------------------
Q 003842          582 DADNPGYSLRTFMGHSAS------------------VMSLDFHPNKDDLICSCDGD------------------------  619 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~------------------V~sl~fspd~~~ll~sgs~D------------------------  619 (792)
                      |+.+ +........+...                  +.+++|+||++.++++...+                        
T Consensus       140 ~~~~-g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (723)
T 1xfd_A          140 AHVG-KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY  218 (723)
T ss_dssp             SSSS-SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred             ECCC-CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccC
Confidence            9987 4444444443333                  37899999998776554322                        


Q ss_pred             ---------CcEEEEEcCCCeeEEEeeC---------CeeEEEEecCCCEEEEEEc----CCeEEEEECCCCeEEEEecC
Q 003842          620 ---------GEIRYWSINNGSCTRVFKG---------GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQG  677 (792)
Q Consensus       620 ---------g~I~iwdl~~~~~~~~~~~---------~~~~v~~sp~~~~lla~s~----dg~I~i~D~~t~~~~~~l~~  677 (792)
                               ..|++||+.++++...+..         .+..+.|+|++..+++...    +..|++||+.++++...+..
T Consensus       219 ~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~  298 (723)
T 1xfd_A          219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED  298 (723)
T ss_dssp             CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             CCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe
Confidence                     2799999998876554442         3456899999987766654    25899999999987766543


Q ss_pred             -CCCCeE----EEEEcCCCCEEEEE-e-CC-------eEEEEECCCCCCcceEEEeecCCCceEE-EEEeCCCCEEEEEE
Q 003842          678 -HTKPID----SVCWDPSGELLASV-S-ED-------SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIG  742 (792)
Q Consensus       678 -h~~~V~----sv~~spdg~~Las~-s-~d-------~I~IwDl~s~~~~~~i~~~~~~~~~i~s-i~fspdg~~L~sgs  742 (792)
                       +...+.    .++|+|||++|+.. + .+       .|++||+..+....+...+......+.. ++|+||+++|++.+
T Consensus       299 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~  378 (723)
T 1xfd_A          299 ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLS  378 (723)
T ss_dssp             ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEE
T ss_pred             ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEE
Confidence             344443    78999999977654 3 22       3777773222220012333333334444 69999999998777


Q ss_pred             cC---CeEEEEECCCC---cEEEEcc---cCCCeEEEEEeCCCCEEEEEeC
Q 003842          743 CY---QSLELWNMSEN---KTMTLTA---HEGLIAALAVSTETGYVASASH  784 (792)
Q Consensus       743 ~d---g~I~IwDl~~~---~~~~~~~---h~~~V~sl~fspdg~~LaSgs~  784 (792)
                      .+   +.++||++...   +...+..   |...+..++|+|||++|+....
T Consensus       379 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          379 TEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             SSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             cCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence            66   78899987643   2223333   6777999999999998876543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=2.3e-22  Score=234.92  Aligned_cols=267  Identities=9%  Similarity=0.070  Sum_probs=206.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeEEeccCC-CCEEEEEECCCCCeEEEEeC---CCcEEEEeCCC-
Q 003842          512 TSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSF---DKTVRVWDADN-  585 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~-Dg~I~vWdl~t~~~~~~l~~h~-~~V~~i~fspdg~~Lasgs~---Dg~V~IWdl~s-  585 (792)
                      ..+|++++|+|||++||+++. ||++.||++++++.. .+..|. ..|..++|+|| +++++++.   +...+||.++. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            456999999999999999887 999999999766554 444454 68999999999 77777765   45566665543 


Q ss_pred             -CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcC----Ce
Q 003842          586 -PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE----NV  660 (792)
Q Consensus       586 -~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~d----g~  660 (792)
                       .+... .+... ..+..++|+|+++.++++.+.++.+.+||+.++++..........+.|+|++..+++++.+    ..
T Consensus        99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~  176 (582)
T 3o4h_A           99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVS  176 (582)
T ss_dssp             STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEE
T ss_pred             CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeE
Confidence             33333 33322 2345778999988766666666667799999998877666555889999999999988876    78


Q ss_pred             EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEeecCCCceEEEE-------
Q 003842          661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHSCV-------  730 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~~~~~~i~~~~~~~~~i~si~-------  730 (792)
                      |++||+.+++.. .+..|...+..++|+|||++|+++..+   .|++||+.++   ... .+..+...+..++       
T Consensus       177 i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~~  251 (582)
T 3o4h_A          177 LFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITWL  251 (582)
T ss_dssp             EEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred             EEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhccccce
Confidence            999999988765 567788889999999999999976655   6999999876   333 5555666666666       


Q ss_pred             -EeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCc---EEEeC
Q 003842          731 -FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF---VKLWK  792 (792)
Q Consensus       731 -fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~---I~IWd  792 (792)
                       |+|||..+++++.++.++||++  ++...  ...+.|.+++|+ +++++++++.+..   |++||
T Consensus       252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          252 GYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             EECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred             eEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence             9999988889999999999999  65543  345678999999 9999998887744   66654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=9.2e-22  Score=234.93  Aligned_cols=275  Identities=12%  Similarity=0.105  Sum_probs=203.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC----
Q 003842          511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP----  586 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~----  586 (792)
                      +...|.+++|+|| ++++.+. ++.|++||+.+++... +..+...+.+++|+|||++|+++ .|+.|++||+.+.    
T Consensus        80 ~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~  155 (706)
T 2z3z_A           80 DAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM  155 (706)
T ss_dssp             --CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred             cccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence            3456999999999 6666664 5999999999886544 44567778999999999999985 6899999999861    


Q ss_pred             CceeEEecccCCC--------------eEEEEEcCCCCeEEEEEe--------------------------------CCC
Q 003842          587 GYSLRTFMGHSAS--------------VMSLDFHPNKDDLICSCD--------------------------------GDG  620 (792)
Q Consensus       587 ~~~i~~~~~h~~~--------------V~sl~fspd~~~ll~sgs--------------------------------~Dg  620 (792)
                      +........+...              +.+++|+||++.++++..                                .+.
T Consensus       156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~  235 (706)
T 2z3z_A          156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV  235 (706)
T ss_dssp             CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred             CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence            2333333333332              489999999987765541                                346


Q ss_pred             cEEEEEcCCCeeEEEee-----CCeeEEEEecCCCEEEEEEcCC-----eEEEEECCCC-eEEEEec-CCCC---CeEEE
Q 003842          621 EIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAAEN-----VVSILDAETQ-ACRLSLQ-GHTK---PIDSV  685 (792)
Q Consensus       621 ~I~iwdl~~~~~~~~~~-----~~~~~v~~sp~~~~lla~s~dg-----~I~i~D~~t~-~~~~~l~-~h~~---~V~sv  685 (792)
                      .|++||+.+++......     ..+..++|+|+++.+++++.++     .|++||+.++ .....+. .+..   .+.++
T Consensus       236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  315 (706)
T 2z3z_A          236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL  315 (706)
T ss_dssp             EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred             EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence            79999999988765542     2356799999999999888765     9999999998 4333332 2222   24678


Q ss_pred             EEcC--CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEE-EEEeCCCCEEEEEEcCC-----eEEEEECCCCc
Q 003842          686 CWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCYQ-----SLELWNMSENK  756 (792)
Q Consensus       686 ~~sp--dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~s-i~fspdg~~L~sgs~dg-----~I~IwDl~~~~  756 (792)
                      +|+|  ||++|++++.+ .++||++..  ....+..+..+...+.. ++|+|+++.|++++.+.     .|+.||+.+++
T Consensus       316 ~~sp~~dg~~l~~~~~~g~~~l~~~~~--~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          316 TFLPGSNNQFIWQSRRDGWNHLYLYDT--TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             EECTTCSSEEEEEECTTSSCEEEEEET--TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             eeecCCCCEEEEEEccCCccEEEEEEC--CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            9999  99999988877 788887752  12456666666666776 79999999888776653     67788888776


Q ss_pred             EEEEcccCCCeEEEEEeCCCCEEEEEeCC----CcEEEeC
Q 003842          757 TMTLTAHEGLIAALAVSTETGYVASASHD----KFVKLWK  792 (792)
Q Consensus       757 ~~~~~~h~~~V~sl~fspdg~~LaSgs~D----G~I~IWd  792 (792)
                      ...+ .|...+.+++|+|||++|+.++.+    +.|++||
T Consensus       394 ~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d  432 (706)
T 2z3z_A          394 TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN  432 (706)
T ss_dssp             CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred             ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence            4444 477789999999999988876554    4599985

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=4.5e-23  Score=246.70  Aligned_cols=271  Identities=14%  Similarity=0.134  Sum_probs=203.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC---CEEEEEECCCCCeEEEEeCC---------CcEEEE
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS---LITDVRFSPSMPRLATSSFD---------KTVRVW  581 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~---~V~~i~fspdg~~Lasgs~D---------g~V~IW  581 (792)
                      .+.+++|+|||+++++ +.||.|++||+.+++....+..|..   .|.+++|+|||++|++++.+         +.|++|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678999999998776 7899999999999998888887765   49999999999999999774         778899


Q ss_pred             eCCCCCceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---e---------------
Q 003842          582 DADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---T---------------  640 (792)
Q Consensus       582 dl~s~~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~---------------  640 (792)
                      |+.++ .. ..+.   .|...+.+++|+|||+.++++.  ++.|++||+.+++.......+   +               
T Consensus        97 d~~~~-~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~  172 (723)
T 1xfd_A           97 KIPHG-DP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL  172 (723)
T ss_dssp             ESSSC-CC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred             ECCCC-ce-EeccCCccccccccccEECCCCCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEec
Confidence            99874 33 3333   3445588999999998776444  479999999998877655431   1               


Q ss_pred             ---eEEEEecCCCEEEEEEcCC----------------------------------eEEEEECCCCeEEEEecCC-----
Q 003842          641 ---AQMRFQPHLGRYLAAAAEN----------------------------------VVSILDAETQACRLSLQGH-----  678 (792)
Q Consensus       641 ---~~v~~sp~~~~lla~s~dg----------------------------------~I~i~D~~t~~~~~~l~~h-----  678 (792)
                         ..+.|+|+++.|++++.++                                  .|++||+.+++....+..+     
T Consensus       173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~  252 (723)
T 1xfd_A          173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM  252 (723)
T ss_dssp             SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred             cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence               5799999999999887543                                  7999999998765666554     


Q ss_pred             -CCCeEEEEEcCCCCEEEEEeC----C-eEEEEECCCCCCcceEEEeec-CCCce----EEEEEeCCCCEEEEE--EcCC
Q 003842          679 -TKPIDSVCWDPSGELLASVSE----D-SVRVWTVGSGSEGECVHELSC-NGNKF----HSCVFHPTYPSLLVI--GCYQ  745 (792)
Q Consensus       679 -~~~V~sv~~spdg~~Las~s~----d-~I~IwDl~s~~~~~~i~~~~~-~~~~i----~si~fspdg~~L~sg--s~dg  745 (792)
                       ...+.+++|+|||++|++...    + .|++||+.++.   +...+.. +...+    ..++|+|||+.|++.  ..++
T Consensus       253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  329 (723)
T 1xfd_A          253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG  329 (723)
T ss_dssp             SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred             ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence             567899999999998876642    2 79999998763   3333222 22333    378999999977764  4555


Q ss_pred             ------eEEEEE-CCCCc---EEEEcccCCCeEE-EEEeCCCCEEEEEeCC---CcEEEeC
Q 003842          746 ------SLELWN-MSENK---TMTLTAHEGLIAA-LAVSTETGYVASASHD---KFVKLWK  792 (792)
Q Consensus       746 ------~I~IwD-l~~~~---~~~~~~h~~~V~s-l~fspdg~~LaSgs~D---G~I~IWd  792 (792)
                            .|++|| ..++.   ...+..+...+.. ++|+|||++|+..+.+   +.++||+
T Consensus       330 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  390 (723)
T 1xfd_A          330 GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS  390 (723)
T ss_dssp             SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred             CCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence                  577788 45555   4444444444554 6999999999876665   7888884

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=1.6e-20  Score=203.79  Aligned_cols=264  Identities=10%  Similarity=0.096  Sum_probs=183.2

Q ss_pred             EEEEEeC----CCeEEEEECC--CCceeE-EeccCCCCEEEEEECCCCCeEEEEeC---CCcEEEEeCCCCC-ceeEEec
Q 003842          526 LLATGGH----DKKAVLWHTD--TLKSKT-NLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPG-YSLRTFM  594 (792)
Q Consensus       526 ~Lasgs~----Dg~I~vWdl~--t~~~~~-~l~~h~~~V~~i~fspdg~~Lasgs~---Dg~V~IWdl~s~~-~~i~~~~  594 (792)
                      .|++|++    ++.|.+|+++  +++... ....+...+..++|+|+++ |++++.   ++.|++||+.++. ..+..+.
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~   82 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV   82 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence            4555543    4567777654  555433 3345567788899999998 555554   6899999997532 1344445


Q ss_pred             ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-Ce--eEEEeeC------------CeeEEEEecCCCEEEEEE-cC
Q 003842          595 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GS--CTRVFKG------------GTAQMRFQPHLGRYLAAA-AE  658 (792)
Q Consensus       595 ~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~--~~~~~~~------------~~~~v~~sp~~~~lla~s-~d  658 (792)
                      .+...+..++|+|+++.+++++..++.|.+|++.. +.  .+..+..            .+..++|+|++. ++++. .+
T Consensus        83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~  161 (347)
T 3hfq_A           83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGS  161 (347)
T ss_dssp             EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTT
T ss_pred             cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCC
Confidence            57778899999999987776666889999999963 32  2333322            255699999999 55544 57


Q ss_pred             CeEEEEECC-CCeEE--EEecC-CCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCC-CCcceEEEeecCC------Cc
Q 003842          659 NVVSILDAE-TQACR--LSLQG-HTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSG-SEGECVHELSCNG------NK  725 (792)
Q Consensus       659 g~I~i~D~~-t~~~~--~~l~~-h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s~-~~~~~i~~~~~~~------~~  725 (792)
                      +.|.+||+. +++..  ..+.. ....+..++|+|||++|++++. + .|.+|++... .....+..+....      ..
T Consensus       162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  241 (347)
T 3hfq_A          162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNG  241 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCE
T ss_pred             CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCc
Confidence            899999998 55433  22222 2336788999999997776554 4 8999998742 1222233333222      45


Q ss_pred             eEEEEEeCCCCEEEEEE-cCCeEEEEECCCC---cEE-EEcccCCCeEEEEEeCCCCEEEEEeCC-CcEEEe
Q 003842          726 FHSCVFHPTYPSLLVIG-CYQSLELWNMSEN---KTM-TLTAHEGLIAALAVSTETGYVASASHD-KFVKLW  791 (792)
Q Consensus       726 i~si~fspdg~~L~sgs-~dg~I~IwDl~~~---~~~-~~~~h~~~V~sl~fspdg~~LaSgs~D-G~I~IW  791 (792)
                      +..++|+|+|++|++++ .++.|.+||+...   +.+ .+..+...+.+++|+|||++|++++.+ +.|.+|
T Consensus       242 ~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          242 AAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             EEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence            88899999999886554 5789999999732   222 444566678999999999998888765 899999

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=3.5e-20  Score=201.20  Aligned_cols=249  Identities=14%  Similarity=0.161  Sum_probs=182.6

Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCc--eeEEeccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEe
Q 003842          509 RASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWD  582 (792)
Q Consensus       509 ~~H~~~V~~lafspdg~~Lasgs~---Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs-~Dg~V~IWd  582 (792)
                      ..+...+.+++|+|||+ |++++.   ++.|++||+++++  .+..+..+...+..++|+|++++|++++ .++.|.+|+
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            34557788999999999 555544   6899999998765  3444556778899999999999888887 678999999


Q ss_pred             CCCCCce--eEEecc---------cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeEEE--ee----CCeeEEE
Q 003842          583 ADNPGYS--LRTFMG---------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRV--FK----GGTAQMR  644 (792)
Q Consensus       583 l~s~~~~--i~~~~~---------h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~-~~~~~~~--~~----~~~~~v~  644 (792)
                      +...+..  +..+..         +...+.+++|+|+++ ++++...++.|++||+. +++....  +.    .....++
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~  193 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV  193 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence            9743332  222221         123488999999998 88788889999999998 5543322  11    1456789


Q ss_pred             EecCCCEEEEEE-cCCeEEEEECCC--CeE--EEEecCCC------CCeEEEEEcCCCCEEEE-EeCC-eEEEEECCCCC
Q 003842          645 FQPHLGRYLAAA-AENVVSILDAET--QAC--RLSLQGHT------KPIDSVCWDPSGELLAS-VSED-SVRVWTVGSGS  711 (792)
Q Consensus       645 ~sp~~~~lla~s-~dg~I~i~D~~t--~~~--~~~l~~h~------~~V~sv~~spdg~~Las-~s~d-~I~IwDl~s~~  711 (792)
                      |+|+++++++++ .++.|.+|+++.  ++.  +..+....      ..+..++|+|||++|++ +..+ .|.+||+....
T Consensus       194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g  273 (347)
T 3hfq_A          194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG  273 (347)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence            999999777765 478999999874  443  23333322      34888999999998754 4445 99999997433


Q ss_pred             CcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEE--ECCCCcEEE
Q 003842          712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELW--NMSENKTMT  759 (792)
Q Consensus       712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-g~I~Iw--Dl~~~~~~~  759 (792)
                      ....+..+..+...+..++|+|++++|++++.+ +.|.+|  |..++++..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          274 HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            445666666666778899999999999998875 799999  556676653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=6.3e-20  Score=198.40  Aligned_cols=224  Identities=13%  Similarity=0.053  Sum_probs=178.6

Q ss_pred             CeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEeccCCCC---------EEEEEECCCCCeEEEEe--CCCcEEEE
Q 003842          514 KVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSL---------ITDVRFSPSMPRLATSS--FDKTVRVW  581 (792)
Q Consensus       514 ~V~~lafspdg~~Lasg-s~Dg~I~vWdl~t~~~~~~l~~h~~~---------V~~i~fspdg~~Lasgs--~Dg~V~IW  581 (792)
                      .+.+++|++||++++++ ..++.|.+||..+++.+..+..+...         +.+++|+|++++|++++  .++.|.+|
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~  169 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV  169 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE
Confidence            36789999999966555 45799999999999988888765432         78999999999887776  47889999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC-------CeeEEEEecCCCEEEE
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-------GTAQMRFQPHLGRYLA  654 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-------~~~~v~~sp~~~~lla  654 (792)
                      |+.+ +..+..+..+...+.+++|+|+++.++ +++.++.|.+||+.+++.+..+..       ....++|+|+++++++
T Consensus       170 d~~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  247 (353)
T 3vgz_A          170 DGGN-IKLKTAIQNTGKMSTGLALDSEGKRLY-TTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFI  247 (353)
T ss_dssp             ETTT-TEEEEEECCCCTTCCCCEEETTTTEEE-EECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred             cCCC-CceEEEecCCCCccceEEECCCCCEEE-EEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence            9987 666666665666688999999988655 666799999999999998877653       2345899999998888


Q ss_pred             EEcC-CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 003842          655 AAAE-NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF  731 (792)
Q Consensus       655 ~s~d-g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s-~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~f  731 (792)
                      ++.+ +.|.+||..+++.+..+....  ..+++|+|+++++++++ .+ .|.+||+.++   +.+..+.. ...+..++|
T Consensus       248 ~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~  321 (353)
T 3vgz_A          248 TDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY---KVVKTFDT-PTHPNSLAL  321 (353)
T ss_dssp             EESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEEEEC-CSEEEEEEE
T ss_pred             EeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCC---eEEEEEec-CCCCCeEEE
Confidence            7764 899999999999888776543  25799999999766665 45 9999999876   55555544 347899999


Q ss_pred             eCCCCEEEEEEcCC
Q 003842          732 HPTYPSLLVIGCYQ  745 (792)
Q Consensus       732 spdg~~L~sgs~dg  745 (792)
                      +|++++|+++..++
T Consensus       322 s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          322 SADGKTLYVSVKQK  335 (353)
T ss_dssp             CTTSCEEEEEEECC
T ss_pred             cCCCCEEEEEEccc
Confidence            99999888887664

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=1e-20  Score=225.84  Aligned_cols=239  Identities=13%  Similarity=0.148  Sum_probs=178.1

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CceeEEeccCCCC--------------EEEEEECCCCCeEE
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-----LKSKTNLEEHSSL--------------ITDVRFSPSMPRLA  570 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t-----~~~~~~l~~h~~~--------------V~~i~fspdg~~La  570 (792)
                      .+...+.+++|||||++||++ .|+.|++||+.+     ++.......+...              +.+++|+|||++|+
T Consensus       118 ~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la  196 (706)
T 2z3z_A          118 DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLA  196 (706)
T ss_dssp             CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEE
T ss_pred             CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEE
Confidence            345567889999999999995 689999999998     7766555444433              48999999999999


Q ss_pred             EEe---------------------------------CCCcEEEEeCCCCCceeEEe--cccCCCeEEEEEcCCCCeEEEE
Q 003842          571 TSS---------------------------------FDKTVRVWDADNPGYSLRTF--MGHSASVMSLDFHPNKDDLICS  615 (792)
Q Consensus       571 sgs---------------------------------~Dg~V~IWdl~s~~~~i~~~--~~h~~~V~sl~fspd~~~ll~s  615 (792)
                      +++                                 .+..|++||+.+ +......  ..|...|.+++|+||++.++++
T Consensus       197 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  275 (706)
T 2z3z_A          197 FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT-GKTVYLQTGEPKEKFLTNLSWSPDENILYVA  275 (706)
T ss_dssp             EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT-TEEEECCCCSCTTCEEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC-CceEeeccCCCCceeEeeEEEECCCCEEEEE
Confidence            987                                 346799999987 4333322  2466789999999999866644


Q ss_pred             EeCCC-----cEEEEEcCCC-eeEEEee--CC-----eeEEEEec--CCCEEEEEEcCCeEEEEECC-CCeEEEEecCCC
Q 003842          616 CDGDG-----EIRYWSINNG-SCTRVFK--GG-----TAQMRFQP--HLGRYLAAAAENVVSILDAE-TQACRLSLQGHT  679 (792)
Q Consensus       616 gs~Dg-----~I~iwdl~~~-~~~~~~~--~~-----~~~v~~sp--~~~~lla~s~dg~I~i~D~~-t~~~~~~l~~h~  679 (792)
                      + .++     .|++||+.++ .....+.  ..     ...+.|+|  ++..++++..++.+.||+++ ++..+..+..+.
T Consensus       276 ~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~  354 (706)
T 2z3z_A          276 E-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE  354 (706)
T ss_dssp             E-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSS
T ss_pred             E-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCC
Confidence            4 444     8999999998 4433332  11     24579999  88877777778888888876 667777888788


Q ss_pred             CCeEE-EEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEE
Q 003842          680 KPIDS-VCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY----QSLE  748 (792)
Q Consensus       680 ~~V~s-v~~spdg~~Las~s~d------~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d----g~I~  748 (792)
                      ..+.+ ++|+|+++.|++++.+      .|+.||+.++.    ...+. +...+..++|+||+++|++.+.+    +.|+
T Consensus       355 ~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~  429 (706)
T 2z3z_A          355 WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVT  429 (706)
T ss_dssp             SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEE
T ss_pred             eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEE
Confidence            88877 7999999987766543      46666666542    22232 45668899999999998887654    4699


Q ss_pred             EEECCCCc
Q 003842          749 LWNMSENK  756 (792)
Q Consensus       749 IwDl~~~~  756 (792)
                      +||+.+++
T Consensus       430 l~d~~~~~  437 (706)
T 2z3z_A          430 VTNIGKGS  437 (706)
T ss_dssp             EEESSSCE
T ss_pred             EEECCCCe
Confidence            99999887

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.87  E-value=2.2e-20  Score=201.39  Aligned_cols=268  Identities=8%  Similarity=0.031  Sum_probs=191.6

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC-CCEEEEEECCCCCeEE-EEeCCCcEEEEeCCCCCceeEEec
Q 003842          517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFM  594 (792)
Q Consensus       517 ~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~-~~V~~i~fspdg~~La-sgs~Dg~V~IWdl~s~~~~i~~~~  594 (792)
                      .++++++++++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|++||+.+ +..+..+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~   82 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHAN   82 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEEEEEE
Confidence            45678889999999999999999999999888887543 2578999999998665 555789999999987 55555544


Q ss_pred             cc------CCCeEEEEEcCCCCeEEEEEeC-----------CCcEEEEEcCCCee---EEEee--CCeeEEEEecCCCEE
Q 003842          595 GH------SASVMSLDFHPNKDDLICSCDG-----------DGEIRYWSINNGSC---TRVFK--GGTAQMRFQPHLGRY  652 (792)
Q Consensus       595 ~h------~~~V~sl~fspd~~~ll~sgs~-----------Dg~I~iwdl~~~~~---~~~~~--~~~~~v~~sp~~~~l  652 (792)
                      ..      ...+.+++|+|+++.++++...           ++.|++||+.+++.   +..+.  ..+.+++|+|++. +
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L  161 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence            22      2337889999999877655533           48999999988443   33333  3467788999998 6


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEecCCCC------------------------CeEEEEEcCCCCEEEEEeCC--eEEEEE
Q 003842          653 LAAAAENVVSILDAETQACRLSLQGHTK------------------------PIDSVCWDPSGELLASVSED--SVRVWT  706 (792)
Q Consensus       653 la~s~dg~I~i~D~~t~~~~~~l~~h~~------------------------~V~sv~~spdg~~Las~s~d--~I~IwD  706 (792)
                      ++++  +.|.+||..+++.+..+..+..                        ...++++++++.........  .+..+|
T Consensus       162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence            6643  4499999999988877654320                        23446666554322111111  233356


Q ss_pred             CCCCCCcceEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003842          707 VGSGSEGECVHELSCNGNKFHSCVFHP-TYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD  785 (792)
Q Consensus       707 l~s~~~~~~i~~~~~~~~~i~si~fsp-dg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~D  785 (792)
                      ..++.  ..+..+......+..++|+| ++++++++  ++.|++||+.+++.+........+.+++|++++++|++++.+
T Consensus       240 ~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  315 (349)
T 1jmx_B          240 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF  315 (349)
T ss_dssp             TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred             ccCCc--EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCC
Confidence            65542  12223334566788999999 99999888  789999999999887554455568899999999998888889


Q ss_pred             CcEEEeC
Q 003842          786 KFVKLWK  792 (792)
Q Consensus       786 G~I~IWd  792 (792)
                      +.|++||
T Consensus       316 ~~v~v~d  322 (349)
T 1jmx_B          316 NDLAVFN  322 (349)
T ss_dssp             SEEEEEE
T ss_pred             CeEEEEe
Confidence            9999996

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.87  E-value=7.6e-21  Score=209.13  Aligned_cols=285  Identities=12%  Similarity=0.069  Sum_probs=204.2

Q ss_pred             eeeeeecCCCCeEE-----EEEcCCCCEEEEEeC-CC--eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 003842          504 EANSVRASTSKVIC-----CHFSSDGKLLATGGH-DK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD  575 (792)
Q Consensus       504 ~~~~l~~H~~~V~~-----lafspdg~~Lasgs~-Dg--~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D  575 (792)
                      .+..+..|...+..     .+|+|||++||+++. ++  .|++||+.+++......++...+..++|+||++.|++++.+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            45566666666666     899999999999887 66  48899999998877777777666678899999999999999


Q ss_pred             CcEEEEeCCCCCceeEEecccCCCeEEEE--EcCCCCeEEEEE---------------------eCCCcEEEEEcCCCee
Q 003842          576 KTVRVWDADNPGYSLRTFMGHSASVMSLD--FHPNKDDLICSC---------------------DGDGEIRYWSINNGSC  632 (792)
Q Consensus       576 g~V~IWdl~s~~~~i~~~~~h~~~V~sl~--fspd~~~ll~sg---------------------s~Dg~I~iwdl~~~~~  632 (792)
                      +.|++||+.+ +.....+..+...+....  +++++..+++..                     ..+..|++||+.+++.
T Consensus       102 ~~l~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          102 RNLMRVDLAT-LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TEEEEEETTT-CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CeEEEEECCC-CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            9999999997 555555555555554444  478887655322                     2347899999999876


Q ss_pred             EEEee--CCeeEEEEec-CCCEEEEEEcC------CeEEEEECCCCeEEEEecCCC--CCeEEEEEcCCCCEEEEEeC--
Q 003842          633 TRVFK--GGTAQMRFQP-HLGRYLAAAAE------NVVSILDAETQACRLSLQGHT--KPIDSVCWDPSGELLASVSE--  699 (792)
Q Consensus       633 ~~~~~--~~~~~v~~sp-~~~~lla~s~d------g~I~i~D~~t~~~~~~l~~h~--~~V~sv~~spdg~~Las~s~--  699 (792)
                      .....  ..+..+.|+| +++.++.+..+      ..|.++|...+.... +..+.  ..+..++|+|||+.|+..+.  
T Consensus       181 ~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~  259 (388)
T 3pe7_A          181 TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWVPDGSALVYVSYLK  259 (388)
T ss_dssp             EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred             EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceECCCCCEEEEEecCC
Confidence            65543  3467789999 88888877763      378888887665433 33333  25778999999997765443  


Q ss_pred             C----eEEEEECCCCCCcceEEEeecCCCc---eEEEEEeCCCCEEEEE---------EcCCeEEEEECCCCcEEEEccc
Q 003842          700 D----SVRVWTVGSGSEGECVHELSCNGNK---FHSCVFHPTYPSLLVI---------GCYQSLELWNMSENKTMTLTAH  763 (792)
Q Consensus       700 d----~I~IwDl~s~~~~~~i~~~~~~~~~---i~si~fspdg~~L~sg---------s~dg~I~IwDl~~~~~~~~~~h  763 (792)
                      +    .|++||+.+++. ..+..+......   ...++|+|||+.|++.         ..+..|++||+.+++...+..+
T Consensus       260 ~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~  338 (388)
T 3pe7_A          260 GSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARH  338 (388)
T ss_dssp             TCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEEC
T ss_pred             CCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccc
Confidence            2    399999988643 233333221000   1113799999988865         3455899999999988777777


Q ss_pred             CC-----------CeEEEEEeCCCCEEEEEeC-CCcEEEe
Q 003842          764 EG-----------LIAALAVSTETGYVASASH-DKFVKLW  791 (792)
Q Consensus       764 ~~-----------~V~sl~fspdg~~LaSgs~-DG~I~IW  791 (792)
                      ..           .+.+++|+|||++|+.++. +|...||
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~  378 (388)
T 3pe7_A          339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY  378 (388)
T ss_dssp             CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence            66           6888999999998887664 7777777

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=2.2e-19  Score=196.18  Aligned_cols=267  Identities=12%  Similarity=0.092  Sum_probs=190.7

Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCC--Cce--eEEeccCCCCEEEEEECCCCCeEEEEe
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDT--LKS--KTNLEEHSSLITDVRFSPSMPRLATSS  573 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~D----g~I~vWdl~t--~~~--~~~l~~h~~~V~~i~fspdg~~Lasgs  573 (792)
                      ++.+..+  +...+..++|+|||++|++++.+    +.|.+|+++.  ++.  +..+..+......+++  ++++|++++
T Consensus        41 ~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~  116 (361)
T 3scy_A           41 SLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTAN  116 (361)
T ss_dssp             EEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEE
T ss_pred             EEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEE
Confidence            3444444  77788999999999999999876    7999998865  433  3334446667888888  788777776


Q ss_pred             -CCCcEEEEeCCCCCcee---EE--ecc--------cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee------E
Q 003842          574 -FDKTVRVWDADNPGYSL---RT--FMG--------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC------T  633 (792)
Q Consensus       574 -~Dg~V~IWdl~s~~~~i---~~--~~~--------h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~------~  633 (792)
                       .++.|.+|++...+...   ..  ..+        +...+.+++|+|+++.+++++..++.|++|++.....      +
T Consensus       117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l  196 (361)
T 3scy_A          117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKF  196 (361)
T ss_dssp             TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCC
T ss_pred             CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccce
Confidence             57899999997643221   11  111        1234688999999998887877799999999875431      1


Q ss_pred             ------E--Ee--eCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeE--EEEec---CCCCCeEEEEEcCCCCEEEEE
Q 003842          634 ------R--VF--KGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQAC--RLSLQ---GHTKPIDSVCWDPSGELLASV  697 (792)
Q Consensus       634 ------~--~~--~~~~~~v~~sp~~~~lla~s-~dg~I~i~D~~t~~~--~~~l~---~h~~~V~sv~~spdg~~Las~  697 (792)
                            .  ..  ......++|+|+++++++++ .++.|.+||+++++.  +..+.   .+.....+++|+|||++|+++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~  276 (361)
T 3scy_A          197 LTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYAS  276 (361)
T ss_dssp             EEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEE
T ss_pred             eecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEE
Confidence                  1  11  12456799999999888888 589999999987754  33332   234557899999999988665


Q ss_pred             e-C-C-eEEEEECCC-CCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--ECCCCcEEEEc--ccCCCeE
Q 003842          698 S-E-D-SVRVWTVGS-GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELW--NMSENKTMTLT--AHEGLIA  768 (792)
Q Consensus       698 s-~-d-~I~IwDl~s-~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~Iw--Dl~~~~~~~~~--~h~~~V~  768 (792)
                      . . + .|.+|++.. ......+..+.. ...+..++|+|++++|++++ .++.|.+|  |..++++..+.  .+...+.
T Consensus       277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~  355 (361)
T 3scy_A          277 NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPV  355 (361)
T ss_dssp             ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEE
T ss_pred             CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCe
Confidence            4 4 3 899999962 222344555554 56788999999999999988 56889996  55577766443  3456788


Q ss_pred             EEEEe
Q 003842          769 ALAVS  773 (792)
Q Consensus       769 sl~fs  773 (792)
                      |+.|.
T Consensus       356 ~v~~~  360 (361)
T 3scy_A          356 CLKFV  360 (361)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99886

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=2.9e-20  Score=199.22  Aligned_cols=257  Identities=10%  Similarity=0.065  Sum_probs=194.0

Q ss_pred             CCCcceeccCCcceeeeeeeecCC-C-CeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCceeEEecc-C----CCCEEEE
Q 003842          489 AGGRGMDVSQGFSFKEANSVRAST-S-KVICCHFSSDGKLLAT-GGHDKKAVLWHTDTLKSKTNLEE-H----SSLITDV  560 (792)
Q Consensus       489 ~~~~~~d~~~~~~~~~~~~l~~H~-~-~V~~lafspdg~~Las-gs~Dg~I~vWdl~t~~~~~~l~~-h----~~~V~~i  560 (792)
                      ..+..||...+   +.+..+.... . .+.+++|+|||++|++ +..++.|.+||+.+++.+..+.. +    ...+.++
T Consensus        11 ~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~   87 (337)
T 1pby_B           11 DKLVVIDTEKM---AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA   87 (337)
T ss_dssp             TEEEEEETTTT---EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCE
T ss_pred             CeEEEEECCCC---cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccce
Confidence            34455665443   3444444222 2 4889999999987654 55678999999999988877653 2    2257789


Q ss_pred             EECCCCCeEEEEe------------CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 003842          561 RFSPSMPRLATSS------------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN  628 (792)
Q Consensus       561 ~fspdg~~Lasgs------------~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~  628 (792)
                      +|+|++++|++++            .++.|++||+.+ +..+..+.. ...+.+++|+|+++.++++   ++.|++||+.
T Consensus        88 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~  162 (337)
T 1pby_B           88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKAFEA-PRQITMLAWARDGSKLYGL---GRDLHVMDPE  162 (337)
T ss_dssp             EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEEEETT
T ss_pred             EECCCCCEEEEEecccccccccccccCceEEEEECCC-CcEEEEEeC-CCCcceeEECCCCCEEEEe---CCeEEEEECC
Confidence            9999999998886            579999999986 555555543 4567889999999877654   6899999999


Q ss_pred             CCeeEEEeeCCe--eEEEEecCCCEEEEEEcCC------------------------eEEEEECCCCeEE-EEecCCCCC
Q 003842          629 NGSCTRVFKGGT--AQMRFQPHLGRYLAAAAEN------------------------VVSILDAETQACR-LSLQGHTKP  681 (792)
Q Consensus       629 ~~~~~~~~~~~~--~~v~~sp~~~~lla~s~dg------------------------~I~i~D~~t~~~~-~~l~~h~~~  681 (792)
                      +++.+..+....  ..+.|+|++..+++.+..+                        .|.+||+.+++.. ..+..+...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  242 (337)
T 1pby_B          163 AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF  242 (337)
T ss_dssp             TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred             CCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCc
Confidence            999887765433  4457888887665554322                        4789999998764 334456677


Q ss_pred             eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          682 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       682 V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      +.+++|+|++++|+++ .+.|++||+.++   +.+..+.. ...+.+++|+|++++|++++.++.|++||+.+++.+
T Consensus       243 ~~~~~~s~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          243 YFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             eeeEEECCCCCEEEEe-CCeEEEEECCCC---cCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence            8899999999999888 459999999876   45555443 346789999999999999989999999999998876

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=1.9e-19  Score=196.58  Aligned_cols=264  Identities=12%  Similarity=0.106  Sum_probs=187.0

Q ss_pred             CCEEEEEeC----CCeEEEEEC--CCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC----CcEEEEeCCCC-Cc--ee
Q 003842          524 GKLLATGGH----DKKAVLWHT--DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD----KTVRVWDADNP-GY--SL  590 (792)
Q Consensus       524 g~~Lasgs~----Dg~I~vWdl--~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D----g~V~IWdl~s~-~~--~i  590 (792)
                      ..++++|++    ++.|++|++  ++++.......+...+..++|+|++++|++++.+    +.|.+|+++.. +.  .+
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~   92 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL   92 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence            345666643    568888876  4565443322277788899999999999999886    79999999764 22  22


Q ss_pred             EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE------ee-----------CCeeEEEEecCCCEEE
Q 003842          591 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------FK-----------GGTAQMRFQPHLGRYL  653 (792)
Q Consensus       591 ~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~------~~-----------~~~~~v~~sp~~~~ll  653 (792)
                      .....+......+++  +++.++++...++.|.+|++.....+..      +.           .+...++|+|++++++
T Consensus        93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~  170 (361)
T 3scy_A           93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL  170 (361)
T ss_dssp             EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred             eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence            333345567788888  7777777776799999999975433221      11           1235699999999887


Q ss_pred             EEEc-CCeEEEEECCCCe-------E------EEEecCCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCCCcceEE
Q 003842          654 AAAA-ENVVSILDAETQA-------C------RLSLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVH  717 (792)
Q Consensus       654 a~s~-dg~I~i~D~~t~~-------~------~~~l~~h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s~~~~~~i~  717 (792)
                      +++. ++.|.+|++....       .      ......+...+.+++|+|+|++|++++. + .|.+||+.++. ...+.
T Consensus       171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~-~~~~~  249 (361)
T 3scy_A          171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM-LDEIQ  249 (361)
T ss_dssp             EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE-EEEEE
T ss_pred             EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc-eEEeE
Confidence            7765 7899999887533       1      1222234556889999999998887774 4 99999998542 22233


Q ss_pred             Ee---ecCCCceEEEEEeCCCCEEEEEEcC--CeEEEEECC--CCcEE---EEcccCCCeEEEEEeCCCCEEEEEe-CCC
Q 003842          718 EL---SCNGNKFHSCVFHPTYPSLLVIGCY--QSLELWNMS--ENKTM---TLTAHEGLIAALAVSTETGYVASAS-HDK  786 (792)
Q Consensus       718 ~~---~~~~~~i~si~fspdg~~L~sgs~d--g~I~IwDl~--~~~~~---~~~~h~~~V~sl~fspdg~~LaSgs-~DG  786 (792)
                      .+   ..+......++|+||+++|+++..+  +.|.+|++.  +++..   .+.. ...+.+++|+|||++|++++ .++
T Consensus       250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~  328 (361)
T 3scy_A          250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTN  328 (361)
T ss_dssp             EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTT
T ss_pred             EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCC
Confidence            33   2233457899999999999887765  799999985  45432   2223 56788999999999998887 578


Q ss_pred             cEEEe
Q 003842          787 FVKLW  791 (792)
Q Consensus       787 ~I~IW  791 (792)
                      .|.+|
T Consensus       329 ~v~v~  333 (361)
T 3scy_A          329 VIQIF  333 (361)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            99996

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=5e-20  Score=207.83  Aligned_cols=279  Identities=11%  Similarity=0.116  Sum_probs=194.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------ceeEE-----eccCCCCEEEEEECCCCCeEE----EE
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----------KSKTN-----LEEHSSLITDVRFSPSMPRLA----TS  572 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~----------~~~~~-----l~~h~~~V~~i~fspdg~~La----sg  572 (792)
                      ...+.++++++++.+|++++.|+ |+||+....          ..+..     ...+...|++++|+|++++|+    +|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            44689999999999999999887 888875311          01111     113566799999999999999    78


Q ss_pred             eCCCcEEEEeCCCC-----C--c---eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CC
Q 003842          573 SFDKTVRVWDADNP-----G--Y---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GG  639 (792)
Q Consensus       573 s~Dg~V~IWdl~s~-----~--~---~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~  639 (792)
                      +.|+.|+|||+.+.     .  .   .+..+.+|...|.+++|+|++..+|++++.||+|++||++++..+....   ..
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~  194 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA  194 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence            89999999998752     1  1   2456667999999999999977788899999999999999987665443   46


Q ss_pred             eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC-------CCeEEEEEcCCCCEEEEEe-CC-------eEEE
Q 003842          640 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-------KPIDSVCWDPSGELLASVS-ED-------SVRV  704 (792)
Q Consensus       640 ~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~-------~~V~sv~~spdg~~Las~s-~d-------~I~I  704 (792)
                      +.+++|+|++.+|++++.||.|++||.+ ++....+..|.       ..|.+++|++++.++++.+ .+       .+++
T Consensus       195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i  273 (434)
T 2oit_A          195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM  273 (434)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence            8899999999999999999999999998 55555554432       3799999999888876543 21       3999


Q ss_pred             EECCCCCC--cceEEEee-------cCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCC--cE--EE--------E--
Q 003842          705 WTVGSGSE--GECVHELS-------CNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSEN--KT--MT--------L--  760 (792)
Q Consensus       705 wDl~s~~~--~~~i~~~~-------~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~~~--~~--~~--------~--  760 (792)
                      |+++....  ...+..+.       ........+.+-++.+++++++.. ..|.|+.....  ..  ..        +  
T Consensus       274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~~ra~lP~  353 (434)
T 2oit_A          274 ALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAELPV  353 (434)
T ss_dssp             EECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEECGGGCCBCCB
T ss_pred             EEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEeccccccccccC
Confidence            99986532  12222221       122233445555888887777664 34555554321  11  00        1  


Q ss_pred             --cccCCCeEEEEEeC---------------CCCEEEEEeCCCcEEEeC
Q 003842          761 --TAHEGLIAALAVST---------------ETGYVASASHDKFVKLWK  792 (792)
Q Consensus       761 --~~h~~~V~sl~fsp---------------dg~~LaSgs~DG~I~IWd  792 (792)
                        ...+..+..+++.-               -.-+|.+-+.||.|..|.
T Consensus       354 ~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~  402 (434)
T 2oit_A          354 TDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFY  402 (434)
T ss_dssp             CTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEE
T ss_pred             CCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEE
Confidence              11233344444421               124678888999999883

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.85  E-value=2.9e-20  Score=222.54  Aligned_cols=269  Identities=13%  Similarity=0.052  Sum_probs=185.7

Q ss_pred             CeEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCcee--EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          514 KVICCHFSSDGKLLATGGH---------DKKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~---------Dg~I~vWdl~t~~~~--~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      .|.+++|||||++||+++.         ++.|++||+++++.+  ..+   ...+.+++|+|||+.|+++. |+.|++||
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~  136 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ  136 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence            3789999999999999876         789999999998763  222   25688999999999999986 78999999


Q ss_pred             CCCCCceeEEe-cccCCCe-----------------EEEEEcCCCCeEEEEEeCCC------------------------
Q 003842          583 ADNPGYSLRTF-MGHSASV-----------------MSLDFHPNKDDLICSCDGDG------------------------  620 (792)
Q Consensus       583 l~s~~~~i~~~-~~h~~~V-----------------~sl~fspd~~~ll~sgs~Dg------------------------  620 (792)
                      +.++ ...... .++...|                 .+++|+|||+.++++...++                        
T Consensus       137 ~~~g-~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp  215 (719)
T 1z68_A          137 RPGD-PPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP  215 (719)
T ss_dssp             STTS-CCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred             CCCC-CcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence            9873 333222 2333322                 48999999987765443322                        


Q ss_pred             ---------cEEEEEcCCCeeE---EE-----e---eCCeeEEEEecCCCEEEEEEcC----CeEEEEE----CCCCeEE
Q 003842          621 ---------EIRYWSINNGSCT---RV-----F---KGGTAQMRFQPHLGRYLAAAAE----NVVSILD----AETQACR  672 (792)
Q Consensus       621 ---------~I~iwdl~~~~~~---~~-----~---~~~~~~v~~sp~~~~lla~s~d----g~I~i~D----~~t~~~~  672 (792)
                               .|++||+.+++..   ..     +   ...+..++|+|++..+++....    ..|.+||    ..++++.
T Consensus       216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~  295 (719)
T 1z68_A          216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP  295 (719)
T ss_dssp             BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred             CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence                     7889999987753   21     1   1235678999995444443322    2588999    8877665


Q ss_pred             EEe----cCCCCCeE-----EEEEcCCCCEEEE--EeCC---eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003842          673 LSL----QGHTKPID-----SVCWDPSGELLAS--VSED---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL  738 (792)
Q Consensus       673 ~~l----~~h~~~V~-----sv~~spdg~~Las--~s~d---~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L  738 (792)
                      ..+    ..|...+.     +++|+|||+.|+.  ...+   .|++||+.++.    ...+..+...+..+.+. +++.|
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d~~~i  370 (719)
T 1z68_A          296 KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV-TQDSL  370 (719)
T ss_dssp             GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE-CSSEE
T ss_pred             EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE-eCCEE
Confidence            544    46777776     8899999996554  3333   68888886653    33444455567777777 88888


Q ss_pred             EEEEcC-----CeEEEEECCC--C--cEEEEc----ccCCCeEEEEEeCCCCEEEE-EeCC--CcEEEeC
Q 003842          739 LVIGCY-----QSLELWNMSE--N--KTMTLT----AHEGLIAALAVSTETGYVAS-ASHD--KFVKLWK  792 (792)
Q Consensus       739 ~sgs~d-----g~I~IwDl~~--~--~~~~~~----~h~~~V~sl~fspdg~~LaS-gs~D--G~I~IWd  792 (792)
                      +..+.+     +.+++|.+..  +  +...+.    +|...+..+.|++|+++|+. ++.+  ..+++||
T Consensus       371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d  440 (719)
T 1z68_A          371 FYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD  440 (719)
T ss_dssp             EEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred             EEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence            888765     6788887643  4  223332    26667889999999987764 3333  3466664

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=6.1e-21  Score=228.46  Aligned_cols=268  Identities=12%  Similarity=0.061  Sum_probs=198.1

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC---CEEEEEECCCCCeEEEEeC---------CCcEEEEeCC
Q 003842          517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS---LITDVRFSPSMPRLATSSF---------DKTVRVWDAD  584 (792)
Q Consensus       517 ~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~---~V~~i~fspdg~~Lasgs~---------Dg~V~IWdl~  584 (792)
                      +++|+|||+++++ +.|+.|++||+.+++....+..|..   .|.+++|+|||++|++++.         |+.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            7899999965554 4699999999999998877776644   4899999999999998876         7899999998


Q ss_pred             CCCcee--EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---------------------ee
Q 003842          585 NPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---------------------TA  641 (792)
Q Consensus       585 s~~~~i--~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---------------------~~  641 (792)
                      + +..+  ..+   ...+.+++|+|||+.++++ . |+.|++||+.++++......+                     ..
T Consensus        99 ~-g~~~~~~~l---~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~  172 (719)
T 1z68_A           99 N-GEFVRGNEL---PRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY  172 (719)
T ss_dssp             T-TEECCSSCC---CSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred             C-Cccccceec---CcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence            7 3331  122   3568899999999877654 3 789999999988766543211                     14


Q ss_pred             EEEEecCCCEEEEEEcCC----------------------------------eEEEEECCCCeEE---E-----EecCCC
Q 003842          642 QMRFQPHLGRYLAAAAEN----------------------------------VVSILDAETQACR---L-----SLQGHT  679 (792)
Q Consensus       642 ~v~~sp~~~~lla~s~dg----------------------------------~I~i~D~~t~~~~---~-----~l~~h~  679 (792)
                      .+.|+|++.+|++++.|.                                  .|++||+.+++.+   .     .+.+|.
T Consensus       173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred             cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence            799999999999887652                                  7889999988642   1     133577


Q ss_pred             CCeEEEEEcCCCCEEEEEeCC-----eEEEEE----CCCCCCcceEE-EeecCCCceE-----EEEEeCCCCEEEE--EE
Q 003842          680 KPIDSVCWDPSGELLASVSED-----SVRVWT----VGSGSEGECVH-ELSCNGNKFH-----SCVFHPTYPSLLV--IG  742 (792)
Q Consensus       680 ~~V~sv~~spdg~~Las~s~d-----~I~IwD----l~s~~~~~~i~-~~~~~~~~i~-----si~fspdg~~L~s--gs  742 (792)
                      ..+.+++|+||++++++....     .|.+||    +.++.....+. ....+...+.     .++|+|||+.|+.  ..
T Consensus       253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  332 (719)
T 1z68_A          253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD  332 (719)
T ss_dssp             EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred             ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence            889999999998877764322     488899    76653322221 0124455555     7899999997665  33


Q ss_pred             cCC--eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEeC
Q 003842          743 CYQ--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD-----KFVKLWK  792 (792)
Q Consensus       743 ~dg--~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~D-----G~I~IWd  792 (792)
                      .++  .|++||+.+++...+..+...|..+.++ +++.|+..+.+     +.++||+
T Consensus       333 ~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~  388 (719)
T 1z68_A          333 KDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR  388 (719)
T ss_dssp             TTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred             cCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence            444  6888899888877777777778888888 88877776665     7788884

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=2e-18  Score=189.65  Aligned_cols=265  Identities=11%  Similarity=0.064  Sum_probs=184.0

Q ss_pred             EEEEEeCC--CeEEEEEC--CCCceeEE--ec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC-CCCceeEEecc-c
Q 003842          526 LLATGGHD--KKAVLWHT--DTLKSKTN--LE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD-NPGYSLRTFMG-H  596 (792)
Q Consensus       526 ~Lasgs~D--g~I~vWdl--~t~~~~~~--l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~-s~~~~i~~~~~-h  596 (792)
                      +|++|++.  +.|.+|++  ++++....  .. .....+..++|+|++++|++++.+ .|.+||+. + +........ .
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~-g~~~~~~~~~~   81 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSP-TEIVHEASHPI   81 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEET-TEEEEEEEEEC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCC-CCEEEeeEeec
Confidence            45666653  56887765  45554322  11 234468899999999999999988 89999997 4 444332221 1


Q ss_pred             CCCeEEEEEcCCCCe-EEEEEe-------------CCCcEEEEEcC-CCeeEEEee-------CCeeEEEEecCCCEEEE
Q 003842          597 SASVMSLDFHPNKDD-LICSCD-------------GDGEIRYWSIN-NGSCTRVFK-------GGTAQMRFQPHLGRYLA  654 (792)
Q Consensus       597 ~~~V~sl~fspd~~~-ll~sgs-------------~Dg~I~iwdl~-~~~~~~~~~-------~~~~~v~~sp~~~~lla  654 (792)
                      .+.+.+++|+|+++. ++++++             .+|.+.+|++. .++....+.       .....++|+|+++++++
T Consensus        82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~  161 (365)
T 1jof_A           82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence            123567899999886 344543             68999999997 465543332       35678999999998887


Q ss_pred             EEc-CCeEEEEECC-CCeEE--EEec--CCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCC--CCCcc---eEEEeec
Q 003842          655 AAA-ENVVSILDAE-TQACR--LSLQ--GHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGS--GSEGE---CVHELSC  721 (792)
Q Consensus       655 ~s~-dg~I~i~D~~-t~~~~--~~l~--~h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s--~~~~~---~i~~~~~  721 (792)
                      +.. ++.|++||++ +++..  ..+.  .|...+..++|+|+|++|++++. + .|.+|++..  +....   .+..+..
T Consensus       162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~  241 (365)
T 1jof_A          162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP  241 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred             EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence            764 6899999998 67543  3333  24567899999999999888775 3 899998753  32110   1122221


Q ss_pred             C----CC------ceEEEE-EeCCCCEEEEEEcCC------eEEEEECC-CCcEEE----EcccCCCeEEEEEeC---CC
Q 003842          722 N----GN------KFHSCV-FHPTYPSLLVIGCYQ------SLELWNMS-ENKTMT----LTAHEGLIAALAVST---ET  776 (792)
Q Consensus       722 ~----~~------~i~si~-fspdg~~L~sgs~dg------~I~IwDl~-~~~~~~----~~~h~~~V~sl~fsp---dg  776 (792)
                      .    ..      .+..++ |+|||++|++++.+.      .|.+|++. +++...    ...+...+..++|+|   ||
T Consensus       242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg  321 (365)
T 1jof_A          242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred             CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence            1    11      578899 999999988876533      89999996 566542    223555678899999   89


Q ss_pred             CEEEEEeCC-CcEEEeC
Q 003842          777 GYVASASHD-KFVKLWK  792 (792)
Q Consensus       777 ~~LaSgs~D-G~I~IWd  792 (792)
                      ++|++++.+ +.|+||+
T Consensus       322 ~~l~v~~~~~~~v~v~~  338 (365)
T 1jof_A          322 EWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             TEEEEECSSSCEEEEEE
T ss_pred             CEEEEEEcCCCeEEEEE
Confidence            999999875 8999995

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.82  E-value=3.4e-19  Score=195.87  Aligned_cols=271  Identities=12%  Similarity=0.027  Sum_probs=187.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003842          514 KVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL  590 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~D---g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i  590 (792)
                      .+.+++|+|||++|+.+..+   ..|++||+.+++.......+...+..+.|+||+++|++++.++.|++||+.+ +...
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-~~~~  115 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLET-LEEQ  115 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT-CCEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCC-CCcE
Confidence            37788999999998887543   4789999998876544433333333478999999999999999999999987 4444


Q ss_pred             EEecccCCCeEE-------------------EEEcCCCCeEEEEE----eCCCcEEEEEcCCCeeEEEee--CCeeEEEE
Q 003842          591 RTFMGHSASVMS-------------------LDFHPNKDDLICSC----DGDGEIRYWSINNGSCTRVFK--GGTAQMRF  645 (792)
Q Consensus       591 ~~~~~h~~~V~s-------------------l~fspd~~~ll~sg----s~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~  645 (792)
                      ..+..+......                   ++|+|+++.+++..    ..+..|++||+.+++......  ..+..+.|
T Consensus       116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~  195 (396)
T 3c5m_A          116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIY  195 (396)
T ss_dssp             EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred             EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceE
Confidence            444434332222                   34567766554332    456789999999887665543  34667899


Q ss_pred             ec-CCCEEEEEEcC------CeEEEEECCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC----e--EEEEECCCCC
Q 003842          646 QP-HLGRYLAAAAE------NVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED----S--VRVWTVGSGS  711 (792)
Q Consensus       646 sp-~~~~lla~s~d------g~I~i~D~~t~~~~~~l~~h-~~~V~sv~~spdg~~Las~s~d----~--I~IwDl~s~~  711 (792)
                      +| +++.+++++.+      ..|.+||+..++........ ...+..++|+|+|++|+.++.+    .  |++||+.++.
T Consensus       196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~  275 (396)
T 3c5m_A          196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE  275 (396)
T ss_dssp             ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred             CCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence            99 67777776653      36899998776543333311 2357889999999977665421    4  9999998763


Q ss_pred             CcceEEEeecCCCceEEEEEeC-CCCEEEEEE----------------cCCeEEEEECCCCcEEEEcccCC---------
Q 003842          712 EGECVHELSCNGNKFHSCVFHP-TYPSLLVIG----------------CYQSLELWNMSENKTMTLTAHEG---------  765 (792)
Q Consensus       712 ~~~~i~~~~~~~~~i~si~fsp-dg~~L~sgs----------------~dg~I~IwDl~~~~~~~~~~h~~---------  765 (792)
                      . ..+..+.    ... +.|+| ++++|++++                .+..|++||+.+++...+..+..         
T Consensus       276 ~-~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~  349 (396)
T 3c5m_A          276 N-EEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDR  349 (396)
T ss_dssp             E-EEEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBS
T ss_pred             e-EEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccc
Confidence            2 2222221    133 89999 999888765                23689999999887666655554         


Q ss_pred             --CeEEEEEeCCCCEEEEEeC-CCcEEEe
Q 003842          766 --LIAALAVSTETGYVASASH-DKFVKLW  791 (792)
Q Consensus       766 --~V~sl~fspdg~~LaSgs~-DG~I~IW  791 (792)
                        .+..++|+|||++|+.++. ++...||
T Consensus       350 ~~~~~~~~~s~dg~~l~~~s~~~~~~~l~  378 (396)
T 3c5m_A          350 QITHPHPSFTPNDDGVLFTSDFEGVPAIY  378 (396)
T ss_dssp             STTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             cCCCCCceEccCCCeEEEEecCCCCceEE
Confidence              2567899999998887765 5666666

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.81  E-value=2e-18  Score=180.30  Aligned_cols=220  Identities=13%  Similarity=0.100  Sum_probs=159.3

Q ss_pred             EeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEeccc-CCCeEEEEEcCC
Q 003842          530 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPN  608 (792)
Q Consensus       530 gs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h-~~~V~sl~fspd  608 (792)
                      ++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|++||+.+.+.....+..+ ...|.+++|+|+
T Consensus        18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd   95 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD   95 (297)
T ss_dssp             CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred             CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence            457899999999988766 4556889999999999999999987 7899999998623444444444 367889999999


Q ss_pred             CCeEEEEEe-CCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEE
Q 003842          609 KDDLICSCD-GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW  687 (792)
Q Consensus       609 ~~~ll~sgs-~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~  687 (792)
                      +..+++++. .++.+.||.++                                     ..++. ...+..+ ..+.+++|
T Consensus        96 g~~l~~~~~~~~~~~~l~~~~-------------------------------------~~~~~-~~~~~~~-~~~~~~~~  136 (297)
T 2ojh_A           96 GALYAISDKVEFGKSAIYLLP-------------------------------------STGGT-PRLMTKN-LPSYWHGW  136 (297)
T ss_dssp             SSEEEEEECTTTSSCEEEEEE-------------------------------------TTCCC-CEECCSS-SSEEEEEE
T ss_pred             CCEEEEEEeCCCCcceEEEEE-------------------------------------CCCCc-eEEeecC-CCccceEE
Confidence            876654432 23444444332                                     11111 1112212 24788999


Q ss_pred             cCCCCEEE-EEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC--CCcEEEEcc
Q 003842          688 DPSGELLA-SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS--ENKTMTLTA  762 (792)
Q Consensus       688 spdg~~La-s~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~--~~~~~~~~~  762 (792)
                      +|++++|+ +++.+ .++||++....  .....+..+...+.+++|+|++++|++++. ++.++||++.  .+....+..
T Consensus       137 spdg~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~  214 (297)
T 2ojh_A          137 SPDGKSFTYCGIRDQVFDIYSMDIDS--GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD  214 (297)
T ss_dssp             CTTSSEEEEEEEETTEEEEEEEETTT--CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred             CCCCCEEEEEECCCCceEEEEEECCC--CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence            99999877 55555 88888864321  234556667778999999999998888774 7888888764  455557777


Q ss_pred             cCCCeEEEEEeCCCCEEEEEeCC-----------CcEEEeC
Q 003842          763 HEGLIAALAVSTETGYVASASHD-----------KFVKLWK  792 (792)
Q Consensus       763 h~~~V~sl~fspdg~~LaSgs~D-----------G~I~IWd  792 (792)
                      |...+.+++|+|++++|++++.|           +.|++||
T Consensus       215 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d  255 (297)
T 2ojh_A          215 SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD  255 (297)
T ss_dssp             CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred             CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence            88889999999999999988876           4588885

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=2.7e-18  Score=185.01  Aligned_cols=236  Identities=12%  Similarity=0.076  Sum_probs=164.5

Q ss_pred             CeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCceeEEeccCC------CCEEEEEECCCCCeEEEEeCC-----------
Q 003842          514 KVICCHFSSDGKLLAT-GGHDKKAVLWHTDTLKSKTNLEEHS------SLITDVRFSPSMPRLATSSFD-----------  575 (792)
Q Consensus       514 ~V~~lafspdg~~Las-gs~Dg~I~vWdl~t~~~~~~l~~h~------~~V~~i~fspdg~~Lasgs~D-----------  575 (792)
                      .+.+++|+|||+++++ +..++.|++||+.+++.+..+..+.      ..+.+++|+|++++|++++.+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            4678999999986654 4568999999999998887776432      337889999999999998865           


Q ss_pred             -CcEEEEeCCCCC--ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe------------
Q 003842          576 -KTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT------------  640 (792)
Q Consensus       576 -g~V~IWdl~s~~--~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~------------  640 (792)
                       +.|.+||+.+..  ..+..+. +...+.+++|+|+++ +++ ++  +.|++||+.+++.+..+....            
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL  198 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCC
T ss_pred             CCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccce
Confidence             899999998622  1223333 344688999999988 554 43  449999999998877664321            


Q ss_pred             ---------------eEEEEecCCCEEEEEE-cCCeEEEEECCCCeE-EEEecCCCCCeEEEEEcC-CCCEEEEEeCCeE
Q 003842          641 ---------------AQMRFQPHLGRYLAAA-AENVVSILDAETQAC-RLSLQGHTKPIDSVCWDP-SGELLASVSEDSV  702 (792)
Q Consensus       641 ---------------~~v~~sp~~~~lla~s-~dg~I~i~D~~t~~~-~~~l~~h~~~V~sv~~sp-dg~~Las~s~d~I  702 (792)
                                     ..+.+.+++....... ....+..+|..+++. ...+..+...+.+++|+| ++++|+++ .+.|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v  277 (349)
T 1jmx_B          199 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRL  277 (349)
T ss_dssp             CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEE
T ss_pred             eeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeE
Confidence                           1233333321110000 011222355555532 222333566789999999 99999888 5599


Q ss_pred             EEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE
Q 003842          703 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT  759 (792)
Q Consensus       703 ~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~  759 (792)
                      ++||+.++   +.+..+.. ...+..++|+|++++|++++.++.|++||+.+++.+.
T Consensus       278 ~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~  330 (349)
T 1jmx_B          278 AKYDLKQR---KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK  330 (349)
T ss_dssp             EEEETTTT---EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred             EEEECccC---eEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceee
Confidence            99999876   45555443 3457789999999999998888999999999988763

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=1.1e-17  Score=183.73  Aligned_cols=244  Identities=12%  Similarity=0.072  Sum_probs=174.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeEEeccC-CCCEEEEEECCCCCe--EEEEe-------------
Q 003842          511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEH-SSLITDVRFSPSMPR--LATSS-------------  573 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~-t~~~~~~l~~h-~~~V~~i~fspdg~~--Lasgs-------------  573 (792)
                      +...+..++|+|||++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++  +++++             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            34568899999999999999888 99999997 77665433211 123567899999994  45553             


Q ss_pred             CCCcEEEEeCCCCCceeEEec----ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeE--EEee-----CCee
Q 003842          574 FDKTVRVWDADNPGYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCT--RVFK-----GGTA  641 (792)
Q Consensus       574 ~Dg~V~IWdl~s~~~~i~~~~----~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~-~~~~~--~~~~-----~~~~  641 (792)
                      .+|.+.+|+++..+.....+.    .+...+.+++|+|+++.++++...++.|++||+. +++..  ..+.     ....
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            689999999985454443333    2456799999999998776555557899999998 67653  2232     2366


Q ss_pred             EEEEecCCCEEEEEEc-CCeEEEEECC--CCeEEE---EecC-------CCC------CeEEEE-EcCCCCEEEEEeC--
Q 003842          642 QMRFQPHLGRYLAAAA-ENVVSILDAE--TQACRL---SLQG-------HTK------PIDSVC-WDPSGELLASVSE--  699 (792)
Q Consensus       642 ~v~~sp~~~~lla~s~-dg~I~i~D~~--t~~~~~---~l~~-------h~~------~V~sv~-~spdg~~Las~s~--  699 (792)
                      .++|+|++++++++.. ++.|.+|+++  +++...   .+..       |..      .+..++ |+|||++|+++..  
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence            7899999999988876 6899999765  555432   2221       121      478999 9999998876643  


Q ss_pred             C-----eEEEEECC-CCCCcceEE-EeecCCCceEEEEEeC---CCCEEEEEEcC-CeEEEEECCCCc
Q 003842          700 D-----SVRVWTVG-SGSEGECVH-ELSCNGNKFHSCVFHP---TYPSLLVIGCY-QSLELWNMSENK  756 (792)
Q Consensus       700 d-----~I~IwDl~-s~~~~~~i~-~~~~~~~~i~si~fsp---dg~~L~sgs~d-g~I~IwDl~~~~  756 (792)
                      +     .|.+|++. ++. ...+. ....+...+..++|+|   ++++|++++.+ +.|.||+++...
T Consensus       277 ~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~  343 (365)
T 1jof_A          277 KFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             STTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             CCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence            3     69999996 332 12211 2333444567789999   89999999875 899999987663

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.79  E-value=6.3e-18  Score=203.51  Aligned_cols=263  Identities=12%  Similarity=0.067  Sum_probs=190.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC-----EEEEEECCCCCeEEEEeCC---------CcEE
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-----ITDVRFSPSMPRLATSSFD---------KTVR  579 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~-----V~~i~fspdg~~Lasgs~D---------g~V~  579 (792)
                      ...+++|+|||.+|+++  |+.|++||+.++++...+..|...     ..++.|+|||++|++++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            46689999999999886  999999999999988888877543     2448899999999999876         5677


Q ss_pred             EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC--------------------
Q 003842          580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--------------------  639 (792)
Q Consensus       580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~--------------------  639 (792)
                      +||+.+ +. +..+..|...+..++|+|||+.++++  .|+.|++||+.++...+....+                    
T Consensus        96 ~~d~~~-~~-~~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~  171 (740)
T 4a5s_A           96 IYDLNK-RQ-LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (740)
T ss_dssp             EEETTT-TE-ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             EEECCC-Cc-EEEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence            999987 33 34566778889999999999877654  3789999999988765532211                    


Q ss_pred             -eeEEEEecCCCEEEEEEcCC------------------------------------eEEEEECCC---C---eEEEEec
Q 003842          640 -TAQMRFQPHLGRYLAAAAEN------------------------------------VVSILDAET---Q---ACRLSLQ  676 (792)
Q Consensus       640 -~~~v~~sp~~~~lla~s~dg------------------------------------~I~i~D~~t---~---~~~~~l~  676 (792)
                       ...+.|+||+++|+.+..|.                                    .|++||+.+   +   +......
T Consensus       172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~  251 (740)
T 4a5s_A          172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA  251 (740)
T ss_dssp             SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred             CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence             12488999999998875321                                    588899988   7   3333222


Q ss_pred             -----CCCCCeEEEEEcCCCCEEEEEeC----C-eEEEEECCCCC----C--cceEEEeecCCCceE-----EEEEeCCC
Q 003842          677 -----GHTKPIDSVCWDPSGELLASVSE----D-SVRVWTVGSGS----E--GECVHELSCNGNKFH-----SCVFHPTY  735 (792)
Q Consensus       677 -----~h~~~V~sv~~spdg~~Las~s~----d-~I~IwDl~s~~----~--~~~i~~~~~~~~~i~-----si~fspdg  735 (792)
                           +|...+..++|+|||++++....    + .|++||+.++.    .  ...+. -..+...+.     .++|+|||
T Consensus       252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-~~~~~~~v~~~~~~~p~fspDG  330 (740)
T 4a5s_A          252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-EMSTTGWVGRFRPSEPHFTLDG  330 (740)
T ss_dssp             CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-EECSSSCSSSSSCCCCEECTTS
T ss_pred             CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-eccCCceEccCcCCCceEcCCC
Confidence                 37778999999999996665432    2 69999998875    1  11111 123333333     67899999


Q ss_pred             CEEE-EEEcC-C--eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC
Q 003842          736 PSLL-VIGCY-Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH  784 (792)
Q Consensus       736 ~~L~-sgs~d-g--~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~  784 (792)
                      +.|+ ..+.. |  .|++||+.++....+......|..+.+ +|++.|+..+.
T Consensus       331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~  382 (740)
T 4a5s_A          331 NSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISN  382 (740)
T ss_dssp             SEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEES
T ss_pred             CEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEe
Confidence            9887 66543 3  799999998888777766666776553 44665554443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=3.8e-17  Score=184.27  Aligned_cols=195  Identities=11%  Similarity=0.131  Sum_probs=143.6

Q ss_pred             cCCCCeEEEEEcCCCCEEE----EEeCCCeEEEEECCCC--------ce---eEEeccCCCCEEEEEECCC-CCeEEEEe
Q 003842          510 ASTSKVICCHFSSDGKLLA----TGGHDKKAVLWHTDTL--------KS---KTNLEEHSSLITDVRFSPS-MPRLATSS  573 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~La----sgs~Dg~I~vWdl~t~--------~~---~~~l~~h~~~V~~i~fspd-g~~Lasgs  573 (792)
                      .|...|++++|+++|++||    +|+.|+.|+|||+.++        +.   +..+.+|...|++|+|+|+ +.+|++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            4677899999999999999    7888999999998654        22   4556679999999999997 78999999


Q ss_pred             CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC----------CeeEE
Q 003842          574 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----------GTAQM  643 (792)
Q Consensus       574 ~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----------~~~~v  643 (792)
                      .||+|+|||+++ +..+....+|...|++++|+|++.. |++|+.||.|++||++ ++....+..          .+.++
T Consensus       170 ~Dg~v~iwD~~~-~~~~~~~~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v  246 (434)
T 2oit_A          170 ADGSIAVLQVTE-TVKVCATLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV  246 (434)
T ss_dssp             TTSCEEEEEESS-SEEEEEEECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred             CCCeEEEEEcCC-CcceeeccCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence            999999999997 4555566678999999999999764 5589999999999998 554444321          45678


Q ss_pred             EEecCCCEEEEEE-cCC------eEEEEECCCCe-----EEEEec-------CCCCCeEEEEEcCCCCEEEEEeCC--eE
Q 003842          644 RFQPHLGRYLAAA-AEN------VVSILDAETQA-----CRLSLQ-------GHTKPIDSVCWDPSGELLASVSED--SV  702 (792)
Q Consensus       644 ~~sp~~~~lla~s-~dg------~I~i~D~~t~~-----~~~~l~-------~h~~~V~sv~~spdg~~Las~s~d--~I  702 (792)
                      .|++++.++++.+ .+|      .+++||+++.+     ....+.       +...+...+.+.++.+++++++..  .|
T Consensus       247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv  326 (434)
T 2oit_A          247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEV  326 (434)
T ss_dssp             EEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBC
T ss_pred             EEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCce
Confidence            8998766554433 333      38999998642     112221       122233345555777877777654  56


Q ss_pred             EEEEC
Q 003842          703 RVWTV  707 (792)
Q Consensus       703 ~IwDl  707 (792)
                      .|+..
T Consensus       327 ~vl~~  331 (434)
T 2oit_A          327 SILAR  331 (434)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            66654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=1.7e-18  Score=202.08  Aligned_cols=229  Identities=13%  Similarity=0.076  Sum_probs=175.0

Q ss_pred             CCCCEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCceeEEecccC-CCeEEEEEcCCCCeEEEEEeC---CCcEEEEEc
Q 003842          553 HSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDG---DGEIRYWSI  627 (792)
Q Consensus       553 h~~~V~~i~fspdg~~Lasgs~-Dg~V~IWdl~s~~~~i~~~~~h~-~~V~sl~fspd~~~ll~sgs~---Dg~I~iwdl  627 (792)
                      +...|++++|+|||++||+++. ||+++||+++. + ....+..+. ..|.+++|+|+  .++++++.   +...++|.+
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~-g-~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG-G-ETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEET-T-EEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcC-C-CcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEE
Confidence            3567999999999999999887 99999999854 4 445555555 68999999998  57767664   455566554


Q ss_pred             CC---CeeEEEe-eCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--
Q 003842          628 NN---GSCTRVF-KGGTAQMRFQPHLGR-YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--  700 (792)
Q Consensus       628 ~~---~~~~~~~-~~~~~~v~~sp~~~~-lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--  700 (792)
                      ..   +...... .......+|+++++. +++.+.++.+.+||+.+++.......+.   .+++|+|||++|++++.+  
T Consensus        96 ~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A           96 NTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             ETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred             eccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence            33   2222211 123446789999875 4455556666799999987665554333   789999999999976543  


Q ss_pred             ---eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEEcccCCCeEEEE----
Q 003842          701 ---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMTLTAHEGLIAALA----  771 (792)
Q Consensus       701 ---~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg--~I~IwDl~~~~~~~~~~h~~~V~sl~----  771 (792)
                         .|++||+.++.    ...+..+...+..++|+|||++|+++..++  .|++||+.+++...+..|...+..++    
T Consensus       173 ~~~~i~~~d~~~g~----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          173 GRVSLFTSNLSSGG----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAI  248 (582)
T ss_dssp             TEEEEEEEETTTCC----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEE
T ss_pred             CCeEEEEEcCCCCC----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccc
Confidence               69999998763    235566778899999999999999888888  89999999998876667777777777    


Q ss_pred             ----EeCCCCEEEEEeCCCcEEEeC
Q 003842          772 ----VSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       772 ----fspdg~~LaSgs~DG~I~IWd  792 (792)
                          |+|||.++++++.||.++||+
T Consensus       249 ~~~~~spdg~~~~~~~~~g~~~l~~  273 (582)
T 3o4h_A          249 TWLGYLPDGRLAVVARREGRSAVFI  273 (582)
T ss_dssp             EEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             cceeEcCCCcEEEEEEcCCcEEEEE
Confidence                999999999999999999995

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.79  E-value=1.9e-17  Score=199.39  Aligned_cols=306  Identities=12%  Similarity=0.069  Sum_probs=200.0

Q ss_pred             ceEEEEeCCCeeeec-CCCeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeeeee
Q 003842          431 PLMMFGTDGAGTLTS-PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVR  509 (792)
Q Consensus       431 ~~l~~s~Dg~~~~ss-~s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~l~  509 (792)
                      ..+.|++||.+++++ +...+||+.+++....+..    ..                                     +.
T Consensus        20 ~~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~~~~----~~-------------------------------------~~   58 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQENNILVFNAEYGNSSVFLEN----ST-------------------------------------FD   58 (740)
T ss_dssp             CCEEECSSSEEEEEETTEEEEEETTTCCEEEEECT----TT-------------------------------------TT
T ss_pred             cccEECCCCcEEEEcCCcEEEEECCCCceEEEEec----hh-------------------------------------hh
Confidence            357999999988775 2337899888764321110    00                                     00


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHD---------KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV  580 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~D---------g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I  580 (792)
                      .+......++|||||++|+.++.+         +.+++||+.+++.. .+..|...+..++|+|||+.||.+. |+.|++
T Consensus        59 ~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~  136 (740)
T 4a5s_A           59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYV  136 (740)
T ss_dssp             TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEE
T ss_pred             hhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEE
Confidence            111123458899999999998876         56779999998754 4667788899999999999999884 688999


Q ss_pred             EeCCCCCceeEEecccCCCe-----------------EEEEEcCCCCeEEEEEeCCC-----------------------
Q 003842          581 WDADNPGYSLRTFMGHSASV-----------------MSLDFHPNKDDLICSCDGDG-----------------------  620 (792)
Q Consensus       581 Wdl~s~~~~i~~~~~h~~~V-----------------~sl~fspd~~~ll~sgs~Dg-----------------------  620 (792)
                      ||+.++.....+..++...+                 .++.|+|||+.|++....++                       
T Consensus       137 ~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~  216 (740)
T 4a5s_A          137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV  216 (740)
T ss_dssp             ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred             EECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence            99987432222222333323                 35899999987776543222                       


Q ss_pred             ------------cEEEEEcCC---C---eeEEEee--------CCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCe
Q 003842          621 ------------EIRYWSINN---G---SCTRVFK--------GGTAQMRFQPHLGRYLAAAAE----NVVSILDAETQA  670 (792)
Q Consensus       621 ------------~I~iwdl~~---~---~~~~~~~--------~~~~~v~~sp~~~~lla~s~d----g~I~i~D~~t~~  670 (792)
                                  .|++||+.+   +   +......        ..+..+.|+|++..++.....    ..|.+||+.+++
T Consensus       217 ~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             ECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             cCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence                        588899988   7   3333211        124568899998866655442    379999998876


Q ss_pred             ----EEE--Ee--cCCCCCeE-----EEEEcCCCCEEE-EEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEe
Q 003842          671 ----CRL--SL--QGHTKPID-----SVCWDPSGELLA-SVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH  732 (792)
Q Consensus       671 ----~~~--~l--~~h~~~V~-----sv~~spdg~~La-s~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fs  732 (792)
                          +..  .+  ..|...|.     .+.|+|||+.|+ ..+++    .|++||+..+.   + ..+......+..+.+ 
T Consensus       297 ~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~---~-~~lT~g~~~v~~~~~-  371 (740)
T 4a5s_A          297 GRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD---C-TFITKGTWEVIGIEA-  371 (740)
T ss_dssp             TEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS---C-EESCCSSSCEEEEEE-
T ss_pred             cccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc---e-EecccCCEEEEEEEE-
Confidence                221  11  44666555     789999999776 66533    69999987642   2 233333444555432 


Q ss_pred             CCCCEEEEEEcC-------CeEEEEECCCCcEE-EEcc----cCCCeEEEEEeCCCCEEEEEeC
Q 003842          733 PTYPSLLVIGCY-------QSLELWNMSENKTM-TLTA----HEGLIAALAVSTETGYVASASH  784 (792)
Q Consensus       733 pdg~~L~sgs~d-------g~I~IwDl~~~~~~-~~~~----h~~~V~sl~fspdg~~LaSgs~  784 (792)
                      +|++.|+..+..       ..|+..++.++... .+..    ....+..+.|++++++++....
T Consensus       372 ~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s  435 (740)
T 4a5s_A          372 LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS  435 (740)
T ss_dssp             ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred             EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeC
Confidence            457777766654       25666666655543 2321    2356889999999998765543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=1.2e-16  Score=175.54  Aligned_cols=263  Identities=11%  Similarity=0.061  Sum_probs=194.9

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceeEEeccC------CCCEEEEEECCCCC
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEH------SSLITDVRFSPSMP  567 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~----------Dg~I~vWdl~t~~~~~~l~~h------~~~V~~i~fspdg~  567 (792)
                      .+..+..+..+  .++|+|||++|++++.          ++.|.+||+.+++.+.++...      ......++|+|||+
T Consensus        43 ~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~  120 (361)
T 2oiz_A           43 FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK  120 (361)
T ss_dssp             EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS
T ss_pred             EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC
Confidence            44556666554  8999999999999863          678999999999988887643      34567899999999


Q ss_pred             eEEEEeC--CCcEEEEeCCCCCceeEE-ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEEe------e
Q 003842          568 RLATSSF--DKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVF------K  637 (792)
Q Consensus       568 ~Lasgs~--Dg~V~IWdl~s~~~~i~~-~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~~------~  637 (792)
                      +|+++..  ++.|.+||+.+ .+.+.. +. .. ....+.+.|++...+++.+.||.+.+|++.. ++.....      .
T Consensus       121 ~l~v~n~~~~~~v~v~d~~~-~~~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~  197 (361)
T 2oiz_A          121 FIVLQNASPATSIGIVDVAK-GDYVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFS  197 (361)
T ss_dssp             EEEEEEESSSEEEEEEETTT-TEEEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSC
T ss_pred             EEEEECCCCCCeEEEEECCC-CcEEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEc
Confidence            9998874  57899999997 555555 43 22 2334667888767777888999999999875 5544221      1


Q ss_pred             C--CeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEecCC------C----CCeEEEEEcCCCCEEEEEeC----
Q 003842          638 G--GTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGH------T----KPIDSVCWDPSGELLASVSE----  699 (792)
Q Consensus       638 ~--~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~--~~~~l~~h------~----~~V~sv~~spdg~~Las~s~----  699 (792)
                      .  ....+.+.+++..++..+.++.|+++|+....  .+..+...      .    .....++|++++++++++..    
T Consensus       198 ~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~  277 (361)
T 2oiz_A          198 VKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK  277 (361)
T ss_dssp             TTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred             CCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence            1  11223446777788888889999999987553  22222110      0    11223789999887776532    


Q ss_pred             -------C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC--cEEEE-cccCCCeE
Q 003842          700 -------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN--KTMTL-TAHEGLIA  768 (792)
Q Consensus       700 -------d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~--~~~~~-~~h~~~V~  768 (792)
                             . .|.+||+.+.   +.+..+..+.  +..++|+|||++|++++. +.|.+||..++  +.+.. ..+.....
T Consensus       278 ~~~~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~  351 (361)
T 2oiz_A          278 EGTHKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASL  351 (361)
T ss_dssp             TTCTTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEE
T ss_pred             cccccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcE
Confidence                   2 7999999876   7777777766  999999999999998887 99999999999  88754 57788889


Q ss_pred             EEEEeCCCC
Q 003842          769 ALAVSTETG  777 (792)
Q Consensus       769 sl~fspdg~  777 (792)
                      .++|+|+|+
T Consensus       352 ~~~~~p~G~  360 (361)
T 2oiz_A          352 QVQFHPVGG  360 (361)
T ss_dssp             EEEECCCSC
T ss_pred             EEEecCCCC
Confidence            999999985

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=6.6e-17  Score=177.69  Aligned_cols=262  Identities=9%  Similarity=0.043  Sum_probs=188.2

Q ss_pred             CCCEEEEEe------CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC----------CCcEEEEeCCCC
Q 003842          523 DGKLLATGG------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNP  586 (792)
Q Consensus       523 dg~~Lasgs------~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~----------Dg~V~IWdl~s~  586 (792)
                      +++++++..      .|+.|++||..+++.+..+..+..+  .++|+||+++|++++.          ++.|.+||+.+ 
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t-   90 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK-   90 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT-
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC-
Confidence            455555543      3789999999999998888876554  8999999999998863          67799999987 


Q ss_pred             CceeEEeccc------CCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeEEE-eeCC-eeEEEEecCC-CEEEEEE
Q 003842          587 GYSLRTFMGH------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRV-FKGG-TAQMRFQPHL-GRYLAAA  656 (792)
Q Consensus       587 ~~~i~~~~~h------~~~V~sl~fspd~~~ll~sgs~-Dg~I~iwdl~~~~~~~~-~~~~-~~~v~~sp~~-~~lla~s  656 (792)
                      .+.+..+...      ......++|+|++++++++... ++.|.+||+.+++.+.. +... ...+.+.|++ ..+++.+
T Consensus        91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~  170 (361)
T 2oiz_A           91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC  170 (361)
T ss_dssp             CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE
T ss_pred             CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC
Confidence            5556555432      2456789999999887766554 78999999999998877 5532 2235567765 5677888


Q ss_pred             cCCeEEEEECCC-CeEEEE------ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC-----
Q 003842          657 AENVVSILDAET-QACRLS------LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG-----  723 (792)
Q Consensus       657 ~dg~I~i~D~~t-~~~~~~------l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~-----  723 (792)
                      .||.+.+|+.+. ++....      +..+..++ .+.+++++..++..+.+ .|.+||+.... ...+..+....     
T Consensus       171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~-~~~~~~~~~~~~~~~~  248 (361)
T 2oiz_A          171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE-VKVDGPWSLLNDEDKA  248 (361)
T ss_dssp             TTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS-CEEEEEEESCCHHHHH
T ss_pred             CCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC-ceecccccccCccccc
Confidence            899999999865 554422      22222222 23345677777777766 99999997542 12222221110     


Q ss_pred             -----CceEEEEEeCCCCEEEEEEc-----------CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 003842          724 -----NKFHSCVFHPTYPSLLVIGC-----------YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDK  786 (792)
Q Consensus       724 -----~~i~si~fspdg~~L~sgs~-----------dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG  786 (792)
                           .....++|+|+++.++++..           .+.|.+||+.+++.+ .+..+.  +.+++|+|||++|++++. +
T Consensus       249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~  325 (361)
T 2oiz_A          249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-G  325 (361)
T ss_dssp             TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-S
T ss_pred             cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-C
Confidence                 11123789999998888764           348999999999988 455555  999999999999998887 9


Q ss_pred             cEEEeC
Q 003842          787 FVKLWK  792 (792)
Q Consensus       787 ~I~IWd  792 (792)
                      .|.|||
T Consensus       326 ~v~v~D  331 (361)
T 2oiz_A          326 NVNVYD  331 (361)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            999996

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.77  E-value=2.7e-17  Score=180.74  Aligned_cols=239  Identities=13%  Similarity=0.104  Sum_probs=162.9

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEE--ECCCCCeEEEE---------------
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR--FSPSMPRLATS---------------  572 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~--fspdg~~Lasg---------------  572 (792)
                      ++...+.+++|+|||++|++++.++.|++||+.+++....+..+...+....  +++++++|+..               
T Consensus        78 ~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~  157 (388)
T 3pe7_A           78 GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK  157 (388)
T ss_dssp             SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred             CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccch
Confidence            3344444678999999999999999999999999988877777766665544  48999988743               


Q ss_pred             -------eCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcC-CCCeEEEEEeC-----CCcEEEEEcCCCeeEEEeeC-
Q 003842          573 -------SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP-NKDDLICSCDG-----DGEIRYWSINNGSCTRVFKG-  638 (792)
Q Consensus       573 -------s~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fsp-d~~~ll~sgs~-----Dg~I~iwdl~~~~~~~~~~~-  638 (792)
                             ..+..|++||+.+ +. ...+..+...+..++|+| ++..++++...     +..|++||+..+........ 
T Consensus       158 ~~~~~~~~~~~~l~~~d~~~-g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~  235 (388)
T 3pe7_A          158 FHEFYFTKPCCRLMRVDLKT-GE-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHA  235 (388)
T ss_dssp             HHHHGGGCCCEEEEEEETTT-CC-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCC
T ss_pred             hhhhhccCCcceEEEEECCC-Cc-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCC
Confidence                   2446799999987 33 445556777899999999 88766655542     34788888876654443332 


Q ss_pred             ---CeeEEEEecCCCEEEEEEc-CC----eEEEEECCCCeEEE--EecCCCC---CeEEEEEcCCCCEEEEE--------
Q 003842          639 ---GTAQMRFQPHLGRYLAAAA-EN----VVSILDAETQACRL--SLQGHTK---PIDSVCWDPSGELLASV--------  697 (792)
Q Consensus       639 ---~~~~v~~sp~~~~lla~s~-dg----~I~i~D~~t~~~~~--~l~~h~~---~V~sv~~spdg~~Las~--------  697 (792)
                         .+..+.|+|+++.|+..+. ++    .|++||+.+++...  .+.++..   ....++|+|||++|+..        
T Consensus       236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  315 (388)
T 3pe7_A          236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK  315 (388)
T ss_dssp             TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------
T ss_pred             CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc
Confidence               2445789999998866554 22    39999999986433  3332100   01123799999987754        


Q ss_pred             -eCC-eEEEEECCCCCCcceEEEeecCCC-----------ceEEEEEeCCCCEEEEEEc-CCe--EEEEECCC
Q 003842          698 -SED-SVRVWTVGSGSEGECVHELSCNGN-----------KFHSCVFHPTYPSLLVIGC-YQS--LELWNMSE  754 (792)
Q Consensus       698 -s~d-~I~IwDl~s~~~~~~i~~~~~~~~-----------~i~si~fspdg~~L~sgs~-dg~--I~IwDl~~  754 (792)
                       ..+ .|++||+.++.    +..+..+..           .+..++|+|||++|++++. ++.  |+++++.+
T Consensus       316 ~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~  384 (388)
T 3pe7_A          316 IENDPFLYVFNMKNGT----QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE  384 (388)
T ss_dssp             -CCCCEEEEEETTTTE----EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred             cCCCCEEEEEeccCCc----eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence             334 89999998752    233444444           4678899999998887775 454  44445543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.76  E-value=4.3e-17  Score=192.96  Aligned_cols=280  Identities=13%  Similarity=0.102  Sum_probs=195.3

Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEE--eCCCeEEEEECCCCceeEEeccCCCCEE---------EEEEC--CCCCe-EEEE
Q 003842          507 SVRASTSKVICCHFSSDGKLLATG--GHDKKAVLWHTDTLKSKTNLEEHSSLIT---------DVRFS--PSMPR-LATS  572 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasg--s~Dg~I~vWdl~t~~~~~~l~~h~~~V~---------~i~fs--pdg~~-Lasg  572 (792)
                      .+.+|...|.+++|++++-+++..  +.++...||....+.....+..|...+.         .+.|+  ||+++ |+.+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            456788999999999887666666  5588999999765566677777766666         56665  99998 7766


Q ss_pred             eC-CCcEEEEeCCCCC-ceeEEecc-----cCCCeEEEEEcCCCCeEEEEEeCC----------CcEEEEEcCC------
Q 003842          573 SF-DKTVRVWDADNPG-YSLRTFMG-----HSASVMSLDFHPNKDDLICSCDGD----------GEIRYWSINN------  629 (792)
Q Consensus       573 s~-Dg~V~IWdl~s~~-~~i~~~~~-----h~~~V~sl~fspd~~~ll~sgs~D----------g~I~iwdl~~------  629 (792)
                      +. +..|++|++...+ .....+..     |...+.+++|+|||+.++++. .|          ..|++||+.+      
T Consensus        98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~  176 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMA-EEFTGEGPSDVRRFLAAVPLDGSAAADR  176 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEE-EEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred             ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEE-ecccCCCCCCceeEEEEEECCCCccccC
Confidence            54 5566666665101 33455555     667889999999998776554 34          5899999988      


Q ss_pred             CeeEEEe-e--CCeeEEEEecCCCEEEEEEcC--------CeEEEEECC-CC---eEEEEecCCCCCeEEEEEcCCCCEE
Q 003842          630 GSCTRVF-K--GGTAQMRFQPHLGRYLAAAAE--------NVVSILDAE-TQ---ACRLSLQGHTKPIDSVCWDPSGELL  694 (792)
Q Consensus       630 ~~~~~~~-~--~~~~~v~~sp~~~~lla~s~d--------g~I~i~D~~-t~---~~~~~l~~h~~~V~sv~~spdg~~L  694 (792)
                      ++..... .  .....++|+|++++|++++.+        ..|++||+. ++   +.......|...+..++|+|||+++
T Consensus       177 ~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~  256 (662)
T 3azo_A          177 SAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLI  256 (662)
T ss_dssp             GGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEE
T ss_pred             CceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEE
Confidence            5554433 2  234557899999999888754        379999999 56   4444445567889999999999977


Q ss_pred             EEEeCC---eEEEEECCCCCCcceEEEeecCCCc--------eEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcEEEEc
Q 003842          695 ASVSED---SVRVWTVGSGSEGECVHELSCNGNK--------FHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTMTLT  761 (792)
Q Consensus       695 as~s~d---~I~IwDl~s~~~~~~i~~~~~~~~~--------i~si~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~~~~  761 (792)
                      +++..+   .|++||+.++   ........+...        +..++|++++.+++++.. +.++||  |+.+++...+.
T Consensus       257 ~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~  332 (662)
T 3azo_A          257 VATDRTGWWNLHRVDPATG---AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAA  332 (662)
T ss_dssp             EEECTTSSCEEEEECTTTC---CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECC
T ss_pred             EEECCCCCeEEEEEECCCC---ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEec
Confidence            777665   5666666544   222222221111        457899999999999888 888888  77777766777


Q ss_pred             ccCCCeEEE-EEeCCCCEEEEEeCCCcEEEe
Q 003842          762 AHEGLIAAL-AVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       762 ~h~~~V~sl-~fspdg~~LaSgs~DG~I~IW  791 (792)
                      .|...+..+ +++.+.-++++++.+....||
T Consensus       333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             CCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence            787778877 554443344455556555555

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=3.4e-16  Score=169.33  Aligned_cols=239  Identities=13%  Similarity=0.114  Sum_probs=181.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC------------------------CeEEEEECCCCceeEEec-cCCCCEEEEEECCCC
Q 003842          512 TSKVICCHFSSDGKLLATGGHD------------------------KKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSM  566 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~D------------------------g~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspdg  566 (792)
                      -+.|.+|+|+++|+++++...+                        +.|++||.++++.+..+. .+......|+|++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4569999999999999888777                        479999999998877665 455679999999999


Q ss_pred             CeEEEEeCCCcEEEEeCCCCCceeEEe---------cccCCCeEEEEEcCCCCeEEEEEe-CCCcEEEEEcCCCeeEEEe
Q 003842          567 PRLATSSFDKTVRVWDADNPGYSLRTF---------MGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVF  636 (792)
Q Consensus       567 ~~Lasgs~Dg~V~IWdl~s~~~~i~~~---------~~h~~~V~sl~fspd~~~ll~sgs-~Dg~I~iwdl~~~~~~~~~  636 (792)
                      +++++...++.|++||.+.....+..+         ..+.....+|+|+|++..++++.+ .++.|++|| .+++.+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            988888889999999987532245555         244557899999995455666775 689999999 556666655


Q ss_pred             e-------------CCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcC------CCCEE
Q 003842          637 K-------------GGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQ--GHTKPIDSVCWDP------SGELL  694 (792)
Q Consensus       637 ~-------------~~~~~v~~sp~~~~lla~s-~dg~I~i~D~~t~~~~~~l~--~h~~~V~sv~~sp------dg~~L  694 (792)
                      .             .....++++++++.++++. .++.|++||.++++.+..+.  .+...+.+++|+|      +|+.+
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~  261 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPY  261 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEE
Confidence            3             1256799999966665555 57899999999888888874  3566789999999      33322


Q ss_pred             EEEeCC-eEEEEECCCCCCcceEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003842          695 ASVSED-SVRVWTVGSGSEGECVHEL---SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       695 as~s~d-~I~IwDl~s~~~~~~i~~~---~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~  754 (792)
                      ++...+ .|++||+.++   ..+..+   ..+...+..++++|+|..+++...++.|++|++..
T Consensus       262 v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          262 FGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             TTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             eccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            222333 7999999877   555555   35566789999999997666667788999999754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.75  E-value=4e-16  Score=168.75  Aligned_cols=251  Identities=12%  Similarity=0.082  Sum_probs=175.8

Q ss_pred             CeEEEEEcCCCCEEEEEe---------CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC---Cc--EE
Q 003842          514 KVICCHFSSDGKLLATGG---------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KT--VR  579 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs---------~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D---g~--V~  579 (792)
                      .+..++|  ||++||...         .++.|++||+++++... +    ..+.+++|+|||++|++++.+   +.  |+
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            4677777  898887653         25689999999887543 3    568899999999999888754   33  77


Q ss_pred             EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeC--------------------------CCcEEEEEcCCCeeE
Q 003842          580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--------------------------DGEIRYWSINNGSCT  633 (792)
Q Consensus       580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~--------------------------Dg~I~iwdl~~~~~~  633 (792)
                      +||+.+ +...... .+.. +.+++|+|+++.+++++..                          ...|++||+.+++.+
T Consensus        89 ~~~~~~-g~~~~l~-~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~  165 (347)
T 2gop_A           89 VADLET-LSSKKIL-EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI  165 (347)
T ss_dssp             EEETTT-TEEEEEE-EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred             EEECCC-CceEEEE-cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence            788875 4433333 3334 9999999999887766533                          357999999988763


Q ss_pred             EEee-CCeeEEEEecCCCEEEEEEcCC---------eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---
Q 003842          634 RVFK-GGTAQMRFQPHLGRYLAAAAEN---------VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---  700 (792)
Q Consensus       634 ~~~~-~~~~~v~~sp~~~~lla~s~dg---------~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---  700 (792)
                      ..+. ..+..+.|+|++ .++++..++         .|.++|  +++... +..+ ..+.++  +|+|++|+.++.+   
T Consensus       166 ~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~-l~~~-~~~~~~--spdg~~l~~~~~~~~~  238 (347)
T 2gop_A          166 EEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEK-MFEK-VSFYAV--DSDGERILLYGKPEKK  238 (347)
T ss_dssp             EEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEE-EEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred             eeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEE-eccC-cceeeE--CCCCCEEEEEEccccC
Confidence            3332 266788999998 666555432         455556  554433 3333 445444  8999988776632   


Q ss_pred             ------eEEEEECCCCCCcceEEEeecCCCceEE-EEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEe
Q 003842          701 ------SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS  773 (792)
Q Consensus       701 ------~I~IwDl~s~~~~~~i~~~~~~~~~i~s-i~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fs  773 (792)
                            .|++||  ++   ........+...+.. +.|+ ++ .+++++.++.++|| +.+++...+..+...|.+++|+
T Consensus       239 ~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s  310 (347)
T 2gop_A          239 YMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVD  310 (347)
T ss_dssp             CCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEES
T ss_pred             CccccceEEEEC--CC---ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeee
Confidence                  577777  33   233333444567776 8999 88 88888999999999 8777766666678889999999


Q ss_pred             CCCCEEEEEeCCCcE-EEe
Q 003842          774 TETGYVASASHDKFV-KLW  791 (792)
Q Consensus       774 pdg~~LaSgs~DG~I-~IW  791 (792)
                      +  .++++++.++.. .||
T Consensus       311 ~--~~~~~~~~~~~~~~l~  327 (347)
T 2gop_A          311 E--IVVYLKETATRLRELF  327 (347)
T ss_dssp             S--SEEEEEECSSSCCEEE
T ss_pred             C--cEEEEEcCCCChHHhe
Confidence            9  677777777654 555

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.74  E-value=4.8e-16  Score=167.42  Aligned_cols=266  Identities=11%  Similarity=0.087  Sum_probs=188.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003842          513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT  592 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~  592 (792)
                      ..|.+++|++++..++..+.++.+++|   .++....+..+...+.+++|++++++++++..++.|++||..+ +.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~-~~~~~~   81 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRP   81 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC-CcEEEE
Confidence            447788899988888777888899999   4556677777878899999999999888888899999999986 443333


Q ss_pred             ecccCCCeEEEEEcCCCCeEEEEEeCC----CcEEEEEcCCCeeEEEee-----CCeeEEEEecCCCEEEEEEc------
Q 003842          593 FMGHSASVMSLDFHPNKDDLICSCDGD----GEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAA------  657 (792)
Q Consensus       593 ~~~h~~~V~sl~fspd~~~ll~sgs~D----g~I~iwdl~~~~~~~~~~-----~~~~~v~~sp~~~~lla~s~------  657 (792)
                      ...+...+.+++|++++. ++++...+    +.|.+||..++.....+.     ..+..+++++++..+++...      
T Consensus        82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~  160 (333)
T 2dg1_A           82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP  160 (333)
T ss_dssp             EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred             eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence            335667899999999976 55455555    689999998877653332     24567899998765555443      


Q ss_pred             CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCC-CCCcceE-----EEeecCCCceEEE
Q 003842          658 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGS-GSEGECV-----HELSCNGNKFHSC  729 (792)
Q Consensus       658 dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s-~d-~I~IwDl~s-~~~~~~i-----~~~~~~~~~i~si  729 (792)
                      .+.|..||.++++...... +...+..++|++++++|+.+. .+ .|++||+.+ +.....+     ..+.. ...+..+
T Consensus       161 ~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i  238 (333)
T 2dg1_A          161 LGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSC  238 (333)
T ss_dssp             CEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEE
T ss_pred             CceEEEEeCCCCEEEEeec-CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCce
Confidence            3577788877655443222 234578999999998665554 34 899999964 2221111     11111 2467889


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC------CeEEEEEeCCCCEEEEEeCC
Q 003842          730 VFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG------LIAALAVSTETGYVASASHD  785 (792)
Q Consensus       730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~------~V~sl~fspdg~~LaSgs~D  785 (792)
                      ++++++.++++...++.|.+||........+..+..      .+.+++|++|++.|+.++.+
T Consensus       239 ~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          239 CIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            999999977777778899999985433334433322      68999999998777666655

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.72  E-value=1.6e-14  Score=167.75  Aligned_cols=286  Identities=12%  Similarity=0.068  Sum_probs=208.6

Q ss_pred             eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeEEeccCCCCEEEEEEC----CCCCeEEEEeC-C
Q 003842          503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFS----PSMPRLATSSF-D  575 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~--t~~~~~~l~~h~~~V~~i~fs----pdg~~Lasgs~-D  575 (792)
                      +.+..+... ..+.+++|+|||++|++++.|+.|.+||+.  +++.+.++.... ....++|+    |||++++++++ +
T Consensus       188 ~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~  265 (567)
T 1qks_A          188 EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWP  265 (567)
T ss_dssp             CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEET
T ss_pred             eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccC
Confidence            344444433 357799999999999999999999999996  888888887543 46899999    69998887765 5


Q ss_pred             CcEEEEeCCCCCceeEEecc----------c-CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE--ee--CCe
Q 003842          576 KTVRVWDADNPGYSLRTFMG----------H-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FK--GGT  640 (792)
Q Consensus       576 g~V~IWdl~s~~~~i~~~~~----------h-~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~~--~~~  640 (792)
                      +.|.|||..+ .+.+..+..          | ...+..|.+++++..+++....+|.|.++|....+.+..  +.  ...
T Consensus       266 ~~v~ViD~~t-~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~  344 (567)
T 1qks_A          266 PQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFL  344 (567)
T ss_dssp             TEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSE
T ss_pred             CeEEEEECCC-CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccc
Confidence            8999999887 555555432          1 226788999999888888888889999999987643322  22  244


Q ss_pred             eEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecC-----CCCCeEEEEEcCCCC-EEEEEe-C-CeEEEEECCCCC
Q 003842          641 AQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-----HTKPIDSVCWDPSGE-LLASVS-E-DSVRVWTVGSGS  711 (792)
Q Consensus       641 ~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~-----h~~~V~sv~~spdg~-~Las~s-~-d~I~IwDl~s~~  711 (792)
                      ..+.|++++.++++++. ++.|.++|+.+++.+..+..     |.+....+ ++|++. +++++. . +.|.+||..+..
T Consensus       345 ~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~  423 (567)
T 1qks_A          345 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEG  423 (567)
T ss_dssp             EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred             cCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCC
Confidence            56889999999888775 78999999999988776653     33222222 578754 445553 2 399999998632


Q ss_pred             C----cceEEEeecCCCceEEEEEeCCCCEEEEEEc-------CCeEEEEECCCC-----c-E-EEEc--------ccCC
Q 003842          712 E----GECVHELSCNGNKFHSCVFHPTYPSLLVIGC-------YQSLELWNMSEN-----K-T-MTLT--------AHEG  765 (792)
Q Consensus       712 ~----~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-------dg~I~IwDl~~~-----~-~-~~~~--------~h~~  765 (792)
                      .    .+.+..+......-..+.++|+++++++...       .+.|.|||+.+.     . . ..+.        ....
T Consensus       424 ~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  503 (567)
T 1qks_A          424 HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQP  503 (567)
T ss_dssp             CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCC
T ss_pred             CccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCc
Confidence            2    4677777765544455778999999998773       359999999876     2 1 1221        1245


Q ss_pred             CeEEEEEeCCCCEEEEEeC-----CCcEEEeC
Q 003842          766 LIAALAVSTETGYVASASH-----DKFVKLWK  792 (792)
Q Consensus       766 ~V~sl~fspdg~~LaSgs~-----DG~I~IWd  792 (792)
                      .+..+.|+++|++|..+..     ++.|.|+|
T Consensus       504 ~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          504 RVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             EEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             ceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence            7899999999998776643     68888875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=5.3e-15  Score=155.72  Aligned_cols=232  Identities=12%  Similarity=0.129  Sum_probs=170.7

Q ss_pred             cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec------ccCCCeEEEEEcCCCCeEEEEEeC-CCcEEE
Q 003842          552 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM------GHSASVMSLDFHPNKDDLICSCDG-DGEIRY  624 (792)
Q Consensus       552 ~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~------~h~~~V~sl~fspd~~~ll~sgs~-Dg~I~i  624 (792)
                      ++-..+.+|++++++.++++...++.|.+||.+  +..+..+.      ++...+.++++.+.+..++++... ++.|++
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~--g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC--CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            455678999999999988888889999999987  34455543      234578999995333456655543 899999


Q ss_pred             EEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEEe
Q 003842          625 WSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVS  698 (792)
Q Consensus       625 wdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~--~h~~~V~sv~~spdg~~Las~s  698 (792)
                      || .+++.+..+.    .....+++.+++..+++...++.|.+||.. ++.+..+.  .+...+.+|+++++|+++++..
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence            99 5666666653    246678999998766665668899999965 45555553  3455689999999999887776


Q ss_pred             CC-eEEEEECCCCCCcceEEEeecC--CCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEEEEcccC--CCeEEEEE
Q 003842          699 ED-SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTMTLTAHE--GLIAALAV  772 (792)
Q Consensus       699 ~d-~I~IwDl~s~~~~~~i~~~~~~--~~~i~si~fspdg~~L~sgs~dg-~I~IwDl~~~~~~~~~~h~--~~V~sl~f  772 (792)
                      .+ .|++||...    ..+..+...  ...+..+++++++.++++...++ .|.+||........+..+.  ..+.+++|
T Consensus       183 ~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~  258 (286)
T 1q7f_A          183 RAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVAL  258 (286)
T ss_dssp             GGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEE
T ss_pred             CCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEE
Confidence            66 999999743    344455433  35688999999998777777775 9999997544443444433  34789999


Q ss_pred             eCCCCEEEEEeCCCcEEEeC
Q 003842          773 STETGYVASASHDKFVKLWK  792 (792)
Q Consensus       773 spdg~~LaSgs~DG~I~IWd  792 (792)
                      +++|+++++ +.|++|+||+
T Consensus       259 ~~~g~l~vs-~~~~~v~v~~  277 (286)
T 1q7f_A          259 MDDGSVVLA-SKDYRLYIYR  277 (286)
T ss_dssp             ETTTEEEEE-ETTTEEEEEE
T ss_pred             CCCCcEEEE-CCCCeEEEEE
Confidence            999987776 6799999995

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.72  E-value=2.4e-16  Score=173.06  Aligned_cols=234  Identities=11%  Similarity=0.071  Sum_probs=161.2

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEE-------------------EEECCCCCeEEEE-----
Q 003842          517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD-------------------VRFSPSMPRLATS-----  572 (792)
Q Consensus       517 ~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~-------------------i~fspdg~~Lasg-----  572 (792)
                      ++.|+|||++|+.++.++.|++||+.+++....+..+.....+                   +.|+|+++.++.+     
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  164 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT  164 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence            4789999999999999999999999998876666555543333                   4567888877655     


Q ss_pred             eCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcC-CCCeEEEEEeCC-----CcEEEEEcCCCeeEEEeeC----CeeE
Q 003842          573 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP-NKDDLICSCDGD-----GEIRYWSINNGSCTRVFKG----GTAQ  642 (792)
Q Consensus       573 s~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fsp-d~~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~~----~~~~  642 (792)
                      ..+..|++||+.+ +.. ..+..+...+..+.|+| ++..++++....     ..|++||+..++.......    .+..
T Consensus       165 ~~~~~l~~~d~~~-g~~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~  242 (396)
T 3c5m_A          165 NPTCRLIKVDIET-GEL-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTH  242 (396)
T ss_dssp             CCCEEEEEEETTT-CCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEE
T ss_pred             CCcceEEEEECCC-CcE-EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccc
Confidence            3567899999987 333 33335677899999999 666565544322     4689999876654443332    2455


Q ss_pred             EEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEe----------------CC
Q 003842          643 MRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVS----------------ED  700 (792)
Q Consensus       643 v~~sp~~~~lla~s~d-----g~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp-dg~~Las~s----------------~d  700 (792)
                      +.|+|++.+|++++.+     +.|++||+.+++....... . .+. +.|+| +|++|++++                .+
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~  319 (396)
T 3c5m_A          243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND  319 (396)
T ss_dssp             EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred             eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence            7999999988777654     4499999998865443321 1 233 89999 999888754                23


Q ss_pred             -eEEEEECCCCCCcceEEEeecCCC-----------ceEEEEEeCCCCEEEEEEcC-C--eEEEEECCCCcEEE
Q 003842          701 -SVRVWTVGSGSEGECVHELSCNGN-----------KFHSCVFHPTYPSLLVIGCY-Q--SLELWNMSENKTMT  759 (792)
Q Consensus       701 -~I~IwDl~s~~~~~~i~~~~~~~~-----------~i~si~fspdg~~L~sgs~d-g--~I~IwDl~~~~~~~  759 (792)
                       .|++||+.++.. ..   +..+..           .+..++|+|++++|++++.+ +  .|+++|+.++....
T Consensus       320 ~~i~~~d~~~~~~-~~---l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~  389 (396)
T 3c5m_A          320 PFLYVLNTKAKSA-QK---LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHL  389 (396)
T ss_dssp             CEEEEEETTTTBC-CE---EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC--
T ss_pred             CcEEEEecccCce-EE---ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccccc
Confidence             899999987632 22   222222           25567899999998888764 4  46666777666543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=7.1e-15  Score=154.72  Aligned_cols=236  Identities=10%  Similarity=0.125  Sum_probs=174.3

Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec------cCCCCEEEEEE-CCCCCeEEEEeC-CCcEEE
Q 003842          509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE------EHSSLITDVRF-SPSMPRLATSSF-DKTVRV  580 (792)
Q Consensus       509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~------~h~~~V~~i~f-spdg~~Lasgs~-Dg~V~I  580 (792)
                      .++-..+.+++++++|+++++...++.|.+||.+ ++.+..+.      ++...+.++++ .+++.++++... ++.|++
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            3555679999999999988888889999999987 56666554      24467899999 567766666543 889999


Q ss_pred             EeCCCCCceeEEec-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----CCeeEEEEecCCCEEEE
Q 003842          581 WDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLA  654 (792)
Q Consensus       581 Wdl~s~~~~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~~~~~v~~sp~~~~lla  654 (792)
                      ||..  +..+..+. .+...+.+|++.+++. ++++...++.|++||.. ++.+..+.     .....+++++++..+++
T Consensus       105 ~d~~--g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~  180 (286)
T 1q7f_A          105 YNQY--GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS  180 (286)
T ss_dssp             ECTT--SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             ECCC--CcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence            9943  45555553 3446789999999975 66677778999999965 55555553     23567999998775555


Q ss_pred             EEcCCeEEEEECCCCeEEEEecCC--CCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCC--CceEE
Q 003842          655 AAAENVVSILDAETQACRLSLQGH--TKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNG--NKFHS  728 (792)
Q Consensus       655 ~s~dg~I~i~D~~t~~~~~~l~~h--~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~--~~i~s  728 (792)
                      ...++.|++||.. ++.+..+..+  ...+..|+++++|+++++...+  .|.+||.. +   ..+..+..+.  ..+..
T Consensus       181 ~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~~  255 (286)
T 1q7f_A          181 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFD  255 (286)
T ss_dssp             EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEE
T ss_pred             ECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C---CEEEEEcccCCCCccee
Confidence            5668999999974 4555566443  3578999999999988887654  89999953 3   3444444433  34789


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003842          729 CVFHPTYPSLLVIGCYQSLELWNMSEN  755 (792)
Q Consensus       729 i~fspdg~~L~sgs~dg~I~IwDl~~~  755 (792)
                      ++++|++..+++ +.++.|++|++...
T Consensus       256 i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          256 VALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            999999975555 67899999998654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.71  E-value=3.6e-15  Score=161.27  Aligned_cols=232  Identities=11%  Similarity=0.075  Sum_probs=171.2

Q ss_pred             CCCEEEEEECCCCCeEEEEeCC------------------------CcEEEEeCCCCCceeEEec-ccCCCeEEEEEcCC
Q 003842          554 SSLITDVRFSPSMPRLATSSFD------------------------KTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPN  608 (792)
Q Consensus       554 ~~~V~~i~fspdg~~Lasgs~D------------------------g~V~IWdl~s~~~~i~~~~-~h~~~V~sl~fspd  608 (792)
                      -+.|.+|+++++|+++++...+                        +.|.+||..+ +..+..+. ++......|+|+++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN-AEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-CCEEEEECTTTCSSEEEEEECTT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-CeEEeccCCCccCCceEEEECCC
Confidence            4679999999999988888777                        4799999987 44554443 44567899999999


Q ss_pred             CCeEEEEEeCCCcEEEEEcCCCe-eEEEee------------CCeeEEEEec-CCCEEEEEE-cCCeEEEEECCCCeEEE
Q 003842          609 KDDLICSCDGDGEIRYWSINNGS-CTRVFK------------GGTAQMRFQP-HLGRYLAAA-AENVVSILDAETQACRL  673 (792)
Q Consensus       609 ~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~------------~~~~~v~~sp-~~~~lla~s-~dg~I~i~D~~t~~~~~  673 (792)
                      +. ++++...++.|++||..... .+..+.            .....+++++ ++..+++.+ .++.|++|| .+++.+.
T Consensus       102 g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~  179 (329)
T 3fvz_A          102 GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT  179 (329)
T ss_dssp             SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred             CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence            87 67688888999999986542 444442            1356799999 444445544 589999999 5666666


Q ss_pred             EecCC----------CCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCCCCcceEEEee--cCCCceEEEEEeCCCCEEE
Q 003842          674 SLQGH----------TKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLL  739 (792)
Q Consensus       674 ~l~~h----------~~~V~sv~~spd-g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~--~~~~~i~si~fspdg~~L~  739 (792)
                      .+...          -.....|+++++ +.++++...+ .|++||..++   +.+..+.  .+...+..++|+| +..++
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g~~~~  255 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-GFLFA  255 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-CEEEE
Confidence            66422          234889999998 6666666666 9999999765   4555553  3456788999999 33222


Q ss_pred             EE-------EcCCeEEEEECCCCcEEEE----cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          740 VI-------GCYQSLELWNMSENKTMTL----TAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       740 sg-------s~dg~I~IwDl~~~~~~~~----~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +.       ..+..|++||+.+++.+..    ..+...+.+|+|+++|.++++...++.|++|+
T Consensus       256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred             eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence            22       2234899999999998854    35777899999999998888888899999985

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.70  E-value=1.5e-13  Score=144.41  Aligned_cols=272  Identities=9%  Similarity=-0.013  Sum_probs=191.7

Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE-eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~-l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      +..+...+.+++++++|+++++...++.|.+||.. ++.... +..+...+.+|++.+++.++++...++.|..||... 
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-
Confidence            34556789999999999987776668899999988 554332 233567899999999998888777788899999863 


Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-e---CCeeEEEEecCCCEEEEEEcCCeEE
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-K---GGTAQMRFQPHLGRYLAAAAENVVS  662 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~---~~~~~v~~sp~~~~lla~s~dg~I~  662 (792)
                      ......+......+.+|++.+++. ++++...++.|.+||. +++..... .   .....+++.+++..+++...++.|.
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  165 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG  165 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence            221222223456789999999875 5556666889999998 55544322 1   2456788888876555555578999


Q ss_pred             EEECCCCeEEEE-ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003842          663 ILDAETQACRLS-LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV  740 (792)
Q Consensus       663 i~D~~t~~~~~~-l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s  740 (792)
                      +||. +++.... +......+.+++++++|+++++...+ .|.+||. ++.. . ..........+..+++++++..+++
T Consensus       166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~-~~~~~~~~~~~~~i~~~~~g~l~v~  241 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-T-EFKIPTPNARPHAITAGAGIDLWFT  241 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-E-EEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-E-EEECCCCCCCceeEEECCCCCEEEe
Confidence            9999 6655432 33445668899999999977766555 8999998 5421 1 1223334567899999999985555


Q ss_pred             EEcCCeEEEEECCCCcEEEE--cccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003842          741 IGCYQSLELWNMSENKTMTL--TAHEGLIAALAVSTETGYVASASHDKFVK  789 (792)
Q Consensus       741 gs~dg~I~IwDl~~~~~~~~--~~h~~~V~sl~fspdg~~LaSgs~DG~I~  789 (792)
                      ...++.|.+||. ++....+  ..+...+.++++ +++.++++...++.++
T Consensus       242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~  290 (299)
T 2z2n_A          242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGK  290 (299)
T ss_dssp             ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred             ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence            446789999998 4554433  345577999999 8888777655444433

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.70  E-value=5.6e-15  Score=159.68  Aligned_cols=234  Identities=17%  Similarity=0.193  Sum_probs=163.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCC---C--eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC------------
Q 003842          513 SKVICCHFSSDGKLLATGGHD---K--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------------  575 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~D---g--~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D------------  575 (792)
                      ..+.+++|||||++||.++.+   +  .|++||+.+++.......+ . +.+++|+||++.|++++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            458899999999999988754   3  3888899887766554443 3 9999999999998888643            


Q ss_pred             ---------------CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC-------cEEEEEcCCCeeE
Q 003842          576 ---------------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-------EIRYWSINNGSCT  633 (792)
Q Consensus       576 ---------------g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg-------~I~iwdl~~~~~~  633 (792)
                                     ..|++||+.+ +..+..+.. . .+..++|+|++  +++++..++       ...+|.+.+++..
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~-~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  211 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTES-EEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEE  211 (347)
T ss_dssp             CCCC---------CEEEEEEEETTT-TEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEE
T ss_pred             cceeecCcccccCccceEEEEECCC-CeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceE
Confidence                           5689999986 444244444 3 78899999998  555665442       3444444455554


Q ss_pred             EEeeCCeeEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEecCCCCCeEE-EEEcCCCCEEEEEeCC-eEE
Q 003842          634 RVFKGGTAQMRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGHTKPIDS-VCWDPSGELLASVSED-SVR  703 (792)
Q Consensus       634 ~~~~~~~~~v~~sp~~~~lla~s~d--------g~I~i~D~~t~~~~~~l~~h~~~V~s-v~~spdg~~Las~s~d-~I~  703 (792)
                      ..... .....++|++.++++++.+        ..|.+||  +++....+..+...+.. +.|+ ++ ++++++.+ .++
T Consensus       212 ~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~  286 (347)
T 2gop_A          212 KMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVN  286 (347)
T ss_dssp             EEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred             EeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEE
Confidence            43333 3334459999998887754        3788888  56655555566777886 9999 88 88888877 899


Q ss_pred             EEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE-EEEECCCCcEEEEcccCCC
Q 003842          704 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL-ELWNMSENKTMTLTAHEGL  766 (792)
Q Consensus       704 IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I-~IwDl~~~~~~~~~~h~~~  766 (792)
                      || +.++   .. ..+..+...+.+++|++  ..+++++.++.. .||.+. ++...+..|...
T Consensus       287 l~-~~~g---~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~lt~~n~~  342 (347)
T 2gop_A          287 LY-IWDG---EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEKQLTDYNDP  342 (347)
T ss_dssp             EE-EESS---SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEEECCCTTST
T ss_pred             EE-EcCC---ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEEEeccccHh
Confidence            99 8743   33 33334467889999999  677777777654 666665 665566655543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.68  E-value=5.1e-15  Score=177.21  Aligned_cols=243  Identities=8%  Similarity=0.019  Sum_probs=175.2

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCc-------
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDK-----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT-------  577 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg-----~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~-------  577 (792)
                      +|...+..++|||||++||.+..++     .|++||+.+++.+.....+ ..+..++|+|||+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3445688999999999999876543     8999999999877643322 23678999999999999988776       


Q ss_pred             ---------EEEEeCCCCCce-eEEec--ccCCCeEEEEEcCCCCeEEEEEeC----CCcEEEEEcCC------Ce-eEE
Q 003842          578 ---------VRVWDADNPGYS-LRTFM--GHSASVMSLDFHPNKDDLICSCDG----DGEIRYWSINN------GS-CTR  634 (792)
Q Consensus       578 ---------V~IWdl~s~~~~-i~~~~--~h~~~V~sl~fspd~~~ll~sgs~----Dg~I~iwdl~~------~~-~~~  634 (792)
                               |++|++.++... ...+.  .+...+..+.|+||++.++++...    +..|++||+.+      +. ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     999999874322 22223  355668899999999988766642    57899999986      42 233


Q ss_pred             EeeC--CeeEEEEecCCCEEEEEEcC----CeEEEEECCCCe--EEEEecCCCC--CeEEEEEcCCCCEEEEEeCC---e
Q 003842          635 VFKG--GTAQMRFQPHLGRYLAAAAE----NVVSILDAETQA--CRLSLQGHTK--PIDSVCWDPSGELLASVSED---S  701 (792)
Q Consensus       635 ~~~~--~~~~v~~sp~~~~lla~s~d----g~I~i~D~~t~~--~~~~l~~h~~--~V~sv~~spdg~~Las~s~d---~  701 (792)
                      .+..  ......|+++++.+++.+..    +.|.+||+.++.  ....+..|..  .+..++|++++.++++...+   .
T Consensus       281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~  360 (710)
T 2xdw_A          281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (710)
T ss_dssp             EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence            3322  12234588999988887763    369999998764  1233444433  68889999777777777766   5


Q ss_pred             EEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCc
Q 003842          702 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENK  756 (792)
Q Consensus       702 I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d----g~I~IwDl~~~~  756 (792)
                      |++||+.++   ..+..+..+...+..++++|+++.|+....+    +.|++||+.+++
T Consensus       361 l~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          361 LQLHDLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCCC---CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            777887655   4556666667778889999999877655433    589999998877

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.67  E-value=2.6e-14  Score=154.63  Aligned_cols=249  Identities=10%  Similarity=0.004  Sum_probs=184.6

Q ss_pred             CCCeEEEEECCCCceeEEec------cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEE
Q 003842          532 HDKKAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF  605 (792)
Q Consensus       532 ~Dg~I~vWdl~t~~~~~~l~------~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~f  605 (792)
                      .++.|.+||.++++....+.      .......++.+. +++++++...++.|.+||..+ .+.+..+. .......|++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t-~~~~~~i~-~~~~p~~i~~   91 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINT-FKEVGRIT-GFTSPRYIHF   91 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTT-CCEEEEEE-CCSSEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcc-cEEEEEcC-CCCCCcEEEE
Confidence            37899999999998776542      122446778874 444566666689999999998 56666664 4567889999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--------CeeEEEEecCCCEEEEEE--cCCeEEEEECCCCeEEEEe
Q 003842          606 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPHLGRYLAAA--AENVVSILDAETQACRLSL  675 (792)
Q Consensus       606 spd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------~~~~v~~sp~~~~lla~s--~dg~I~i~D~~t~~~~~~l  675 (792)
                      ++++ .++++...++.|.+||+.+++....+..        ....+++  ++++++++.  .++.|.+||.++++.+..+
T Consensus        92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i  168 (328)
T 3dsm_A           92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL  168 (328)
T ss_dssp             EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred             eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence            8887 5665665799999999999998876653        3345666  567777776  3889999999999988877


Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeC-----------CeEEEEECCCCCCcceEEEeecC-CCceEEEEEeCCCCEEEEEEc
Q 003842          676 QGHTKPIDSVCWDPSGELLASVSE-----------DSVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGC  743 (792)
Q Consensus       676 ~~h~~~V~sv~~spdg~~Las~s~-----------d~I~IwDl~s~~~~~~i~~~~~~-~~~i~si~fspdg~~L~sgs~  743 (792)
                      ... .....++++++|++++++..           +.|.+||..++   +....+... ......++|+|++++|+++..
T Consensus       169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred             EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence            643 34578899999997777654           37999999776   444444432 346899999999999988765


Q ss_pred             CCeEEEEECCCCcEEE--Ec-ccCCCeEEEEEeC-CCCEEEEE----eCCCcEEEeC
Q 003842          744 YQSLELWNMSENKTMT--LT-AHEGLIAALAVST-ETGYVASA----SHDKFVKLWK  792 (792)
Q Consensus       744 dg~I~IwDl~~~~~~~--~~-~h~~~V~sl~fsp-dg~~LaSg----s~DG~I~IWd  792 (792)
                        .|++||..+++...  +. .......+++++| ++.++++.    ..++.|.+||
T Consensus       245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence              89999999887641  11 1246789999999 55555555    5688999986

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=1e-13  Score=149.11  Aligned_cols=235  Identities=12%  Similarity=0.102  Sum_probs=169.1

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC----CcEE
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD----KTVR  579 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D----g~V~  579 (792)
                      .+..+..+...+.+++|+++|++++++..++.|++||.++++....+..+...+.+++|+++++++++...+    +.|.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~  115 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF  115 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence            455667777889999999999988888889999999999887766554567889999999999888877666    6899


Q ss_pred             EEeCCCCCceeEEec--ccCCCeEEEEEcCCCCeEEEEEeC------CCcEEEEEcCCCeeEEEee--CCeeEEEEecCC
Q 003842          580 VWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFK--GGTAQMRFQPHL  649 (792)
Q Consensus       580 IWdl~s~~~~i~~~~--~h~~~V~sl~fspd~~~ll~sgs~------Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~  649 (792)
                      +||.++. .....+.  .+...+.++++++++. ++++...      .+.|..||..+++......  .....++|++++
T Consensus       116 ~~d~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg  193 (333)
T 2dg1_A          116 AATENGD-NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE  193 (333)
T ss_dssp             EECTTSC-SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS
T ss_pred             EEeCCCC-EEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCC
Confidence            9999863 3322222  2446799999999986 4444442      3566777766555443322  346778999999


Q ss_pred             CEEEEEE-cCCeEEEEECCC-CeEEE--------EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE
Q 003842          650 GRYLAAA-AENVVSILDAET-QACRL--------SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE  718 (792)
Q Consensus       650 ~~lla~s-~dg~I~i~D~~t-~~~~~--------~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~  718 (792)
                      +.++++. .++.|.+||.++ +..+.        .+.++ ..+..++++++|+++++...+ .|.+||.. +   ..+..
T Consensus       194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~  268 (333)
T 2dg1_A          194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQ  268 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEE
T ss_pred             CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEE
Confidence            8776655 478999999964 32111        12222 467889999999988877766 89999984 3   34444


Q ss_pred             eecCCC------ceEEEEEeCCCCEEEEEEcCC
Q 003842          719 LSCNGN------KFHSCVFHPTYPSLLVIGCYQ  745 (792)
Q Consensus       719 ~~~~~~------~i~si~fspdg~~L~sgs~dg  745 (792)
                      +.....      .+.+++|+++++.|++++.++
T Consensus       269 ~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          269 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            443332      588999999988888777663

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.67  E-value=2.7e-15  Score=177.43  Aligned_cols=239  Identities=10%  Similarity=0.047  Sum_probs=162.8

Q ss_pred             EEEEc--CCCCE-EEEEeC-CCeEEEEECC--CCceeEEecc-----CCCCEEEEEECCCCCeEEEEeCC----------
Q 003842          517 CCHFS--SDGKL-LATGGH-DKKAVLWHTD--TLKSKTNLEE-----HSSLITDVRFSPSMPRLATSSFD----------  575 (792)
Q Consensus       517 ~lafs--pdg~~-Lasgs~-Dg~I~vWdl~--t~~~~~~l~~-----h~~~V~~i~fspdg~~Lasgs~D----------  575 (792)
                      .++|+  |||++ |+.++. +..|++|++.  .......+..     |...+.+++|+|||+.|++++.|          
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence            45555  99998 776654 5667777765  2034555555     67789999999999999999877          


Q ss_pred             CcEEEEeCCCCC----ceeEEec-ccCCCeEEEEEcCCCCeEEEEEeCC-------CcEEEEEcC-CC---eeEEEee--
Q 003842          576 KTVRVWDADNPG----YSLRTFM-GHSASVMSLDFHPNKDDLICSCDGD-------GEIRYWSIN-NG---SCTRVFK--  637 (792)
Q Consensus       576 g~V~IWdl~s~~----~~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~D-------g~I~iwdl~-~~---~~~~~~~--  637 (792)
                      ..|++||+.+..    .....+. .+...+..++|+|||+.+++++...       ..|++||+. ++   +......  
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~  240 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP  240 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred             eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence            579999998621    3445666 6667888999999998777555432       479999999 56   4444332  


Q ss_pred             -CCeeEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEecCCCCC--------eEEEEEcCCCCEEEEEeCCeEEEE-
Q 003842          638 -GGTAQMRFQPHLGRYLAAAAEN--VVSILDAETQACRLSLQGHTKP--------IDSVCWDPSGELLASVSEDSVRVW-  705 (792)
Q Consensus       638 -~~~~~v~~sp~~~~lla~s~dg--~I~i~D~~t~~~~~~l~~h~~~--------V~sv~~spdg~~Las~s~d~I~Iw-  705 (792)
                       ..+..+.|+|++..++++..++  .|++||+.+++.......+...        +.+++|+++++++++++.+.++|| 
T Consensus       241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~  320 (662)
T 3azo_A          241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGI  320 (662)
T ss_dssp             TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEE
T ss_pred             CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEE
Confidence             4567789999999666666677  7777887777665444333222        567899999998888776656666 


Q ss_pred             -ECCCCCCcceEEEeecCCCceEEEEEeCCCCEEE--EEEcCC--eEEEEECCCCcEEEE
Q 003842          706 -TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL--VIGCYQ--SLELWNMSENKTMTL  760 (792)
Q Consensus       706 -Dl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~--sgs~dg--~I~IwDl~~~~~~~~  760 (792)
                       |+.++    .+..+..+...+..+ ++++++.++  +++.+.  .|++||+.+++...+
T Consensus       321 ~d~~~~----~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          321 LDPESG----ELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             EETTTT----EEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred             EECCCC----cEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence             65443    356666666667666 144454433  334333  677778888876654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.66  E-value=4.1e-14  Score=149.94  Aligned_cols=238  Identities=11%  Similarity=0.092  Sum_probs=171.6

Q ss_pred             CceeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003842          544 LKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI  622 (792)
Q Consensus       544 ~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I  622 (792)
                      +..+..+..+.....+++|+++++ +++++..++.|.+||..+.   ...+..+...+.+++|++++. ++++...++.|
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i   92 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRL   92 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCC-EEEEETTTTEE
T ss_pred             CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCc-EEEEecCCCeE
Confidence            344555666677789999999998 7888888999999999863   566666778899999999976 55566667899


Q ss_pred             EEEEcCCCeeEEEee-------CCeeEEEEecCCCEEEEE----E-------------cCCeEEEEECCCCeEEEEecCC
Q 003842          623 RYWSINNGSCTRVFK-------GGTAQMRFQPHLGRYLAA----A-------------AENVVSILDAETQACRLSLQGH  678 (792)
Q Consensus       623 ~iwdl~~~~~~~~~~-------~~~~~v~~sp~~~~lla~----s-------------~dg~I~i~D~~t~~~~~~l~~h  678 (792)
                      .+||..+++......       .....+++++++..+++.    +             ..+.|..||.. ++.. .+..+
T Consensus        93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~  170 (296)
T 3e5z_A           93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRD  170 (296)
T ss_dssp             EEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECC
T ss_pred             EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecC
Confidence            999998887654332       124568999998766652    2             13467777766 4433 34456


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc-ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003842          679 TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG-ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       679 ~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~-~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~  756 (792)
                      ......++|+|++++|++.+.+ .|++||+...... .....+......+..++++++|+++++.  ++.|.+||.....
T Consensus       171 ~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~  248 (296)
T 3e5z_A          171 RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDE  248 (296)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCE
T ss_pred             CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCE
Confidence            6678899999999988666666 9999999722111 1122223344556789999999855554  7899999997444


Q ss_pred             EEEEcccCCCeEEEEE-eCCCCEEEEEeCCCcEEE
Q 003842          757 TMTLTAHEGLIAALAV-STETGYVASASHDKFVKL  790 (792)
Q Consensus       757 ~~~~~~h~~~V~sl~f-spdg~~LaSgs~DG~I~I  790 (792)
                      ...+..+.. +++++| .++++.|++++.++.+++
T Consensus       249 ~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          249 LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI  282 (296)
T ss_dssp             EEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred             EEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence            445666666 999999 589999998888765543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.65  E-value=3.4e-13  Score=148.75  Aligned_cols=266  Identities=9%  Similarity=0.025  Sum_probs=183.9

Q ss_pred             EcCCCCEEEEEeC--CC---eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe----------CCCcEEEEeCC
Q 003842          520 FSSDGKLLATGGH--DK---KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDAD  584 (792)
Q Consensus       520 fspdg~~Lasgs~--Dg---~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----------~Dg~V~IWdl~  584 (792)
                      ..++++++++...  ..   .|.+||..+++.+.++......  .++|+||+++|+++.          .++.|.+||..
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            3467777776653  22   8899999999998888765444  999999999998886          36789999998


Q ss_pred             CCCceeEEeccc-------CCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeEEE-eeCCeeEEEEecCCC-EEEE
Q 003842          585 NPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRV-FKGGTAQMRFQPHLG-RYLA  654 (792)
Q Consensus       585 s~~~~i~~~~~h-------~~~V~sl~fspd~~~ll~sgs~-Dg~I~iwdl~~~~~~~~-~~~~~~~v~~sp~~~-~lla  654 (792)
                      + .+.+..+...       ......+.|+||+++++++... ++.|.++| .+++.+.. +..+. ++.+.+.++ .+++
T Consensus       106 t-~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-~~~~~~~~~~~~~~  182 (373)
T 2mad_H          106 T-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-CYHIHPGAPSTFYL  182 (373)
T ss_pred             C-CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-eEEEEeCCCceEEE
Confidence            6 4445444321       1234589999999988866544 68899999 99998877 65433 355556654 4566


Q ss_pred             EEcCCeEEEEECCCCeEEEEec-----CCCCCe-EEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec------
Q 003842          655 AAAENVVSILDAETQACRLSLQ-----GHTKPI-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC------  721 (792)
Q Consensus       655 ~s~dg~I~i~D~~t~~~~~~l~-----~h~~~V-~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~------  721 (792)
                      .+.||.+.++|. +++.+....     ....++ ....|.+++..++..+.+ .+.++|+..... ..+..+..      
T Consensus       183 ~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~~~  260 (373)
T 2mad_H          183 LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGGRK  260 (373)
T ss_pred             EcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCccc
Confidence            677999999999 877663322     111221 234566665544333344 899999865421 22222211      


Q ss_pred             ----CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-CC
Q 003842          722 ----NGNKFHSCVFHPTYPSLLVIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HD  785 (792)
Q Consensus       722 ----~~~~i~si~fspdg~~L~sgs~----------dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~-~LaSgs-~D  785 (792)
                          .......++++++++.++++..          .+.|.++|+.+++.+..........+++|++||+ +|+++. .+
T Consensus       261 ~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~  340 (373)
T 2mad_H          261 ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGT  340 (373)
T ss_pred             ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCC
Confidence                1122445789999998888764          3579999999999874444555789999999999 777777 48


Q ss_pred             CcEEEeC
Q 003842          786 KFVKLWK  792 (792)
Q Consensus       786 G~I~IWd  792 (792)
                      +.|.+||
T Consensus       341 ~~V~ViD  347 (373)
T 2mad_H          341 EVLHIYD  347 (373)
T ss_pred             CeEEEEE
Confidence            9999986

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.65  E-value=2.6e-13  Score=157.50  Aligned_cols=263  Identities=12%  Similarity=0.052  Sum_probs=190.9

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC--CCCceeEEecccCCC
Q 003842          522 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD--NPGYSLRTFMGHSAS  599 (792)
Q Consensus       522 pdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~--s~~~~i~~~~~h~~~  599 (792)
                      +.+.++++...++.|.+||..+++.+.++... ..+..+.|+||+++|++++.|+.|.+||+.  + ...+..+... ..
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t-~~~v~~i~~G-~~  241 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE-PTTVAEIKIG-SE  241 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSS-CCEEEEEECC-SE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCC-CcEeEEEecC-CC
Confidence            44456677778999999999999999888743 357799999999999999999999999995  4 4556666543 34


Q ss_pred             eEEEEEc----CCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--------------CeeEEEEecCCCEEEEEEc-CCe
Q 003842          600 VMSLDFH----PNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------------GTAQMRFQPHLGRYLAAAA-ENV  660 (792)
Q Consensus       600 V~sl~fs----pd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------------~~~~v~~sp~~~~lla~s~-dg~  660 (792)
                      ...++|+    |+|++++++...++.|.+||..+.+.+..+..              .+..+.+++++..+++... +|.
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~  321 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  321 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence            6799999    69999988888899999999999998877642              2345667777666655544 689


Q ss_pred             EEEEECCCCeEE--EEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeec-----CCCceEEEEE
Q 003842          661 VSILDAETQACR--LSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC-----NGNKFHSCVF  731 (792)
Q Consensus       661 I~i~D~~t~~~~--~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~-----~~~~i~si~f  731 (792)
                      |.++|..+.+.+  ..+ .......++.|+|+|++|+++..+  .|.+||+.++   +.+..+..     |.+.-.. .+
T Consensus       322 v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~-~~  396 (567)
T 1qks_A          322 ILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGAN-FV  396 (567)
T ss_dssp             EEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEE-EE
T ss_pred             EEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCcccee-eE
Confidence            999999876432  222 234567789999999998877643  9999999876   44444433     2211112 26


Q ss_pred             eCCCCEEEEEE--cCCeEEEEECCC-------CcEE-EEcccCCCeEEEEEeCCCCEEEEEeC-------CCcEEEeC
Q 003842          732 HPTYPSLLVIG--CYQSLELWNMSE-------NKTM-TLTAHEGLIAALAVSTETGYVASASH-------DKFVKLWK  792 (792)
Q Consensus       732 spdg~~L~sgs--~dg~I~IwDl~~-------~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~-------DG~I~IWd  792 (792)
                      +|++..+++.+  .++.|.++|..+       .+.+ .+......-..+.++|++++|.+...       ...|.|||
T Consensus       397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d  474 (567)
T 1qks_A          397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD  474 (567)
T ss_dssp             ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred             CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence            88866665554  357999999987       4455 34433333345778999999888663       34788775

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.65  E-value=7.3e-14  Score=147.95  Aligned_cols=240  Identities=11%  Similarity=0.031  Sum_probs=174.0

Q ss_pred             eeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          506 NSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      ..+..+.....+++|+++|+ +++++..++.|.+||..++  ...+..+...+.+++|+++++++++...++.|.+||..
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            34455667789999999998 7888888999999999887  66677778889999999999988877777899999997


Q ss_pred             CCCceeEEecc----cCCCeEEEEEcCCCCeEEEEE----e-------------CCCcEEEEEcCCCeeEEEee--CCee
Q 003842          585 NPGYSLRTFMG----HSASVMSLDFHPNKDDLICSC----D-------------GDGEIRYWSINNGSCTRVFK--GGTA  641 (792)
Q Consensus       585 s~~~~i~~~~~----h~~~V~sl~fspd~~~ll~sg----s-------------~Dg~I~iwdl~~~~~~~~~~--~~~~  641 (792)
                      + +........    ....+.++++.++|. ++++.    .             ..+.|..|+.. ++......  ....
T Consensus        99 ~-g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~  175 (296)
T 3e5z_A           99 G-GEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPN  175 (296)
T ss_dssp             T-CCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEE
T ss_pred             C-CcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCc
Confidence            6 333222221    123567899999986 55452    2             13456666655 44333322  2356


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECC-CCeE---EEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEE
Q 003842          642 QMRFQPHLGRYLAAAAENVVSILDAE-TQAC---RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH  717 (792)
Q Consensus       642 ~v~~sp~~~~lla~s~dg~I~i~D~~-t~~~---~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~  717 (792)
                      .++|+|+++.+++...++.|.+||+. +++.   ...+..+...+.+++++++|+++++. .+.|.+||.. +   +.+.
T Consensus       176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g---~~~~  250 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G---DELG  250 (296)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S---CEEE
T ss_pred             cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C---CEEE
Confidence            79999999988555667899999987 4544   33333355567889999999977776 5599999985 3   5566


Q ss_pred             EeecCCCceEEEEE-eCCCCEEEEEEcCCeEEEEECCCCcE
Q 003842          718 ELSCNGNKFHSCVF-HPTYPSLLVIGCYQSLELWNMSENKT  757 (792)
Q Consensus       718 ~~~~~~~~i~si~f-spdg~~L~sgs~dg~I~IwDl~~~~~  757 (792)
                      .+..+.. +.+++| .++++.|++++.+ .|..++..+.++
T Consensus       251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          251 RVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             EEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred             EEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence            6666666 889999 5899989888875 566677766654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.65  E-value=3.5e-14  Score=155.87  Aligned_cols=271  Identities=8%  Similarity=0.058  Sum_probs=192.4

Q ss_pred             EEEcCCCCEEEEEeC-----CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe----------CCCcEEEEe
Q 003842          518 CHFSSDGKLLATGGH-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWD  582 (792)
Q Consensus       518 lafspdg~~Lasgs~-----Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----------~Dg~V~IWd  582 (792)
                      ....|+++.+++...     ++.|.++|..+++.+.++.....+ . ++++||+++|++++          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            345689988888865     679999999999999999865555 4 99999999888876          367899999


Q ss_pred             CCCCCceeEEeccc-------CCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEE
Q 003842          583 ADNPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLA  654 (792)
Q Consensus       583 l~s~~~~i~~~~~h-------~~~V~sl~fspd~~~ll~sgs~-Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla  654 (792)
                      ..+ ...+..+.-.       ......+.|+|||++++++... ++.|.++|+.+++.+..+..+.....+......+++
T Consensus       116 ~~t-~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~  194 (386)
T 3sjl_D          116 PVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM  194 (386)
T ss_dssp             TTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             CCC-CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEE
Confidence            998 5556655322       1245579999999988766543 789999999999999988654433344444567788


Q ss_pred             EEcCCeEEEEECCC-CeEEEEecCC----CCCeE-EEEEc-CCCCEEEEEeCCeEEEEECCCCCCcceEEEee---c---
Q 003842          655 AAAENVVSILDAET-QACRLSLQGH----TKPID-SVCWD-PSGELLASVSEDSVRVWTVGSGSEGECVHELS---C---  721 (792)
Q Consensus       655 ~s~dg~I~i~D~~t-~~~~~~l~~h----~~~V~-sv~~s-pdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~---~---  721 (792)
                      .+.||.+.++++.+ ++.......+    ..++. ...|. ++|++++....+.|+++|+.+... ..+..+.   .   
T Consensus       195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~~~  273 (386)
T 3sjl_D          195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEAER  273 (386)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHHHH
T ss_pred             ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeecceeccccccc
Confidence            89999999999976 5543322111    12222 24664 677766655544999999975421 2222221   0   


Q ss_pred             ----CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-CC
Q 003842          722 ----NGNKFHSCVFHPTYPSLLVIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HD  785 (792)
Q Consensus       722 ----~~~~i~si~fspdg~~L~sgs~----------dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~-~LaSgs-~D  785 (792)
                          ....+..++++++++.+++...          .+.|.++|+.+++.+....-...++.|+|++|++ +|+++. .+
T Consensus       274 ~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~  353 (386)
T 3sjl_D          274 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD  353 (386)
T ss_dssp             HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTT
T ss_pred             cccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCC
Confidence                0122335778999999888754          2479999999999885444445788999999997 666654 48


Q ss_pred             CcEEEeC
Q 003842          786 KFVKLWK  792 (792)
Q Consensus       786 G~I~IWd  792 (792)
                      +.|.++|
T Consensus       354 ~~VsViD  360 (386)
T 3sjl_D          354 KTLYIHD  360 (386)
T ss_dssp             TEEEEEE
T ss_pred             CeEEEEE
Confidence            9999886

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.63  E-value=1.7e-12  Score=136.34  Aligned_cols=272  Identities=9%  Similarity=0.005  Sum_probs=190.4

Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE-EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003842          509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG  587 (792)
Q Consensus       509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~-~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~  587 (792)
                      ......+.+++++++|+++++...++.|.+||.. ++... .+..+...+.+|++.+++.++++...++.|.+||.. +.
T Consensus        16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence            3455689999999999988877778999999988 55443 233344679999999999877777778889999987 23


Q ss_pred             ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE-ee---CCeeEEEEecCCCEEEEEEcCCeEEE
Q 003842          588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FK---GGTAQMRFQPHLGRYLAAAAENVVSI  663 (792)
Q Consensus       588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~-~~---~~~~~v~~sp~~~~lla~s~dg~I~i  663 (792)
                      .....+......+.++++.+++. ++++...++.|..||.. ++.... +.   .....+++.+++..+++...++.|.+
T Consensus        94 ~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  171 (300)
T 2qc5_A           94 FTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR  171 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             eEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence            32222233446789999998875 55566667899999987 554432 22   24567888888875554445789999


Q ss_pred             EECCCCeEEE-EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003842          664 LDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI  741 (792)
Q Consensus       664 ~D~~t~~~~~-~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sg  741 (792)
                      ||. +++... .+..+...+.+++++++|+++++...+ .|.+||. ++.  .....+......+.++++.+++..+++.
T Consensus       172 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~~  247 (300)
T 2qc5_A          172 ITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE--ISEYDIPTPNARPHAITAGKNSEIWFTE  247 (300)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred             ECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc--EEEEECCCCCCCceEEEECCCCCEEEec
Confidence            998 554433 233345678999999999877776655 8999998 331  1112233345668899999999855555


Q ss_pred             EcCCeEEEEECCCCcEEEE--cccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          742 GCYQSLELWNMSENKTMTL--TAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       742 s~dg~I~IwDl~~~~~~~~--~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ..++.|.+||. ++....+  ......+.+++++++|.++++.. . .|..+
T Consensus       248 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~  296 (300)
T 2qc5_A          248 WGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL  296 (300)
T ss_dssp             TTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred             cCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence            45689999998 4554433  33456789999999998766554 4 55554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.62  E-value=7.1e-14  Score=145.27  Aligned_cols=236  Identities=10%  Similarity=-0.003  Sum_probs=167.1

Q ss_pred             CeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003842          514 KVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT  592 (792)
Q Consensus       514 ~V~~lafspdg~~La-sgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~  592 (792)
                      ...+++++++|++++ +...++.|.+||..+.........+...+.+|++.++++++++.. ++.|.+||....  ....
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~--~~~~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN--NQTV  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS--CCEE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc--eEee
Confidence            588999999999777 446789999999876554332233445788999999998666555 889999998752  2333


Q ss_pred             ec-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003842          593 FM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAET  668 (792)
Q Consensus       593 ~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t  668 (792)
                      +. .....+.+|++.+++. ++++...++.|.+|+..+........   .....+++.+++..+++...++.|.+||...
T Consensus       102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~  180 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  180 (270)
T ss_dssp             CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence            32 2336789999999875 66676778899999876554433221   2456789999887555555678999999988


Q ss_pred             CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003842          669 QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL  747 (792)
Q Consensus       669 ~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I  747 (792)
                      .........+...+.+|+++++|.++++...+ .|.+||.....   .......+...+..+++++++..+++...++.|
T Consensus       181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v  257 (270)
T 1rwi_B          181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV  257 (270)
T ss_dssp             CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred             CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence            76555444444678999999999877777666 89999986532   122122233568999999999977777788999


Q ss_pred             EEEECCCCc
Q 003842          748 ELWNMSENK  756 (792)
Q Consensus       748 ~IwDl~~~~  756 (792)
                      ++|++...+
T Consensus       258 ~~~~~~~~~  266 (270)
T 1rwi_B          258 VKLTSLEHH  266 (270)
T ss_dssp             EEECCCGGG
T ss_pred             EEEcCCCcc
Confidence            999987654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.62  E-value=1.5e-13  Score=148.68  Aligned_cols=251  Identities=9%  Similarity=-0.015  Sum_probs=177.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF  593 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~  593 (792)
                      .+.++++. +++++++...++.|.+||..+++.+.++. .......|+|+++++++++...++.|.+||+.+ ......+
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-~~~~~~i  121 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT-YEITGYI  121 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT-TEEEEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC-CeEEEEE
Confidence            35667774 34455555667999999999999988885 456789999998885444444899999999987 4555444


Q ss_pred             cccC-----CCeEEEEEcCCCCeEEEEEe-CCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEcC-------
Q 003842          594 MGHS-----ASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-------  658 (792)
Q Consensus       594 ~~h~-----~~V~sl~fspd~~~ll~sgs-~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~d-------  658 (792)
                      ....     .....|++  ++..++++.. .++.|.+||+.+++.+..+..  ....+.++++++.++++..+       
T Consensus       122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~  199 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYG  199 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred             EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccc
Confidence            4322     14556777  4556666654 489999999999998877653  34568889987655554444       


Q ss_pred             ---CeEEEEECCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 003842          659 ---NVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT  734 (792)
Q Consensus       659 ---g~I~i~D~~t~~~~~~l~~h-~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspd  734 (792)
                         +.|.+||..+++.+..+... ......++|+|++++|+++.. .|.+||..++.... ...+.........++++|+
T Consensus       200 ~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~  277 (328)
T 3dsm_A          200 YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPN  277 (328)
T ss_dssp             BCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTT
T ss_pred             cCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceee-eeeecCCCCceEEEEEcCC
Confidence               78999999999887776532 246889999999998888766 89999998764311 1111222456889999996


Q ss_pred             CCEEEEEE-----cCCeEEEEECCCCcEEEEcccCCCeEEEEE
Q 003842          735 YPSLLVIG-----CYQSLELWNMSENKTMTLTAHEGLIAALAV  772 (792)
Q Consensus       735 g~~L~sgs-----~dg~I~IwDl~~~~~~~~~~h~~~V~sl~f  772 (792)
                      +..|+++.     .++.|.+||.. ++.+....-......++|
T Consensus       278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~  319 (328)
T 3dsm_A          278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW  319 (328)
T ss_dssp             TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred             CCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence            55565554     56799999998 776633333344556665

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.62  E-value=9.5e-15  Score=174.46  Aligned_cols=245  Identities=11%  Similarity=0.040  Sum_probs=166.0

Q ss_pred             cCCCCeEEEEEcCCCCEEEEE-----eCCCeEEEEECCCCceeEEeccCCCCE--EEEEECCCCCeEEEEeCCCc-----
Q 003842          510 ASTSKVICCHFSSDGKLLATG-----GHDKKAVLWHTDTLKSKTNLEEHSSLI--TDVRFSPSMPRLATSSFDKT-----  577 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasg-----s~Dg~I~vWdl~t~~~~~~l~~h~~~V--~~i~fspdg~~Lasgs~Dg~-----  577 (792)
                      +|...+.+++|||||++||.+     +.+..|++||+++++.+.  ..+...+  ..++|+|||+.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            456678999999999999944     345689999999988651  1121222  68899999999999998876     


Q ss_pred             --------EEEEeCCCCCc---eeEEecccCCCeEEEEEcCCCCeEEEEEeCC-C--cEEEEEcCCCeeEEEee--CCee
Q 003842          578 --------VRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGD-G--EIRYWSINNGSCTRVFK--GGTA  641 (792)
Q Consensus       578 --------V~IWdl~s~~~---~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D-g--~I~iwdl~~~~~~~~~~--~~~~  641 (792)
                              |++|++.++..   .+.....+...+.++.|+|||+.++++...+ +  .|++||..++.......  ....
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  275 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY  275 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence                    99999987432   2333334556889999999998887665543 2  67777665555443332  2333


Q ss_pred             EEEEecCCCEEEEEEc----CCeEEEEECCCCeE---EEEecCC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC
Q 003842          642 QMRFQPHLGRYLAAAA----ENVVSILDAETQAC---RLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE  712 (792)
Q Consensus       642 ~v~~sp~~~~lla~s~----dg~I~i~D~~t~~~---~~~l~~h-~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~  712 (792)
                      ...+ ++++ +++.+.    ++.|.+||+.++..   ...+..+ ...|..++|+ ++.++++...| ..+||.+...  
T Consensus       276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~--  350 (695)
T 2bkl_A          276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK--  350 (695)
T ss_dssp             EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT--
T ss_pred             EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC--
Confidence            4444 6666 665554    57899999987652   3333333 4457888888 66777777777 6666654321  


Q ss_pred             cceEEEeecC-CCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCcEEEEc
Q 003842          713 GECVHELSCN-GNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTLT  761 (792)
Q Consensus       713 ~~~i~~~~~~-~~~i~si~fspdg~~L~sgs~d----g~I~IwDl~~~~~~~~~  761 (792)
                      ...+..+..+ ...+..++++|+++.|+....+    +.|++||+.+++...+.
T Consensus       351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~  404 (695)
T 2bkl_A          351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA  404 (695)
T ss_dssp             CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence            1344555444 4567778899999877755433    58999999988765444

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=2.1e-13  Score=163.24  Aligned_cols=266  Identities=8%  Similarity=0.004  Sum_probs=180.1

Q ss_pred             CCCCEEEEEeCCC-----eEEEEECCCCceeEEec------cCCCCEEEEEECCCCCeEEEEeCCC-----cEEEEeCCC
Q 003842          522 SDGKLLATGGHDK-----KAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSSFDK-----TVRVWDADN  585 (792)
Q Consensus       522 pdg~~Lasgs~Dg-----~I~vWdl~t~~~~~~l~------~h~~~V~~i~fspdg~~Lasgs~Dg-----~V~IWdl~s  585 (792)
                      |||++++....++     .|++.+...++....+.      +|...+..++|+|||++|+.+..++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            8898887665332     44555554544332222      2445688999999999998776543     899999987


Q ss_pred             CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc----------------EEEEEcCCCee--EEEeeC-----CeeE
Q 003842          586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE----------------IRYWSINNGSC--TRVFKG-----GTAQ  642 (792)
Q Consensus       586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~----------------I~iwdl~~~~~--~~~~~~-----~~~~  642 (792)
                       +..+.....+ ..+.+++|+||++.++++. .++.                |++|++.++..  ...+..     ....
T Consensus       161 -g~~~~~~~~~-~~~~~~~wspDg~~l~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~  237 (710)
T 2xdw_A          161 -AKELPDVLER-VKFSCMAWTHDGKGMFYNA-YPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG  237 (710)
T ss_dssp             -TEEEEEEEEE-ECSCCEEECTTSSEEEEEE-CCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             -CCCCcccccC-cccceEEEEeCCCEEEEEE-ECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence             4444322222 2367899999998777555 4444                99999988763  222222     2457


Q ss_pred             EEEecCCCEEEEEEc-----CCeEEEEECCC------Ce-EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-----eEEEE
Q 003842          643 MRFQPHLGRYLAAAA-----ENVVSILDAET------QA-CRLSLQGHTKPIDSVCWDPSGELLASVSED-----SVRVW  705 (792)
Q Consensus       643 v~~sp~~~~lla~s~-----dg~I~i~D~~t------~~-~~~~l~~h~~~V~sv~~spdg~~Las~s~d-----~I~Iw  705 (792)
                      +.|+|++++|++++.     +..|++||+.+      +. ....+..+...+.. .|+++|+.|+..+..     .|.+|
T Consensus       238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~  316 (710)
T 2xdw_A          238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI  316 (710)
T ss_dssp             EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred             EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence            899999999988775     56899999986      42 34455556665655 488999977766542     59999


Q ss_pred             ECCCCCCcceEEEeecCCC--ceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEE
Q 003842          706 TVGSGSEGECVHELSCNGN--KFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVA  780 (792)
Q Consensus       706 Dl~s~~~~~~i~~~~~~~~--~i~si~fspdg~~L~sgs~dg--~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~La  780 (792)
                      |+.++... ....+..+..  .+..++|++++.++++...++  .|++||+.+++.+ .+..+.+.|..+++++++..|+
T Consensus       317 d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          317 DFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF  395 (710)
T ss_dssp             ETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred             eCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence            99775321 2233333433  678899997777777887787  5777888667644 6666778889999999987665


Q ss_pred             EE-eC---CCcEEEeC
Q 003842          781 SA-SH---DKFVKLWK  792 (792)
Q Consensus       781 Sg-s~---DG~I~IWd  792 (792)
                      .. +.   .+.|++||
T Consensus       396 ~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          396 YQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             EEEECSSCCCEEEEEE
T ss_pred             EEEeCCCCCCEEEEEE
Confidence            33 22   46787775

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.59  E-value=1.7e-13  Score=142.38  Aligned_cols=231  Identities=10%  Similarity=-0.024  Sum_probs=162.9

Q ss_pred             CEEEEEECCCCCeEE-EEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE
Q 003842          556 LITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR  634 (792)
Q Consensus       556 ~V~~i~fspdg~~La-sgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~  634 (792)
                      ...+|++++++++++ +...++.|.+||..+. ........+...+.+|++.+++. ++++.. ++.|++||........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST-GTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTV  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCc-ccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEee
Confidence            688999999998777 5477889999998652 22111123335678999999876 554555 8899999987655432


Q ss_pred             Ee-e--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003842          635 VF-K--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG  710 (792)
Q Consensus       635 ~~-~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~  710 (792)
                      .. .  .....+++.+++..+++...++.|.+||..+.............+.+++++++|+++++...+ .|.+||....
T Consensus       102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  181 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  181 (270)
T ss_dssp             CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence            21 1  346678899987755555567899999876655443333333467889999999977776655 9999998754


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc-ccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003842          711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-AHEGLIAALAVSTETGYVASASHDKFVK  789 (792)
Q Consensus       711 ~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~-~h~~~V~sl~fspdg~~LaSgs~DG~I~  789 (792)
                         ............+..++++++|..+++...++.|.+||..+....... .+...+.+++++++|+++++...++.|+
T Consensus       182 ---~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~  258 (270)
T 1rwi_B          182 ---NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV  258 (270)
T ss_dssp             ---CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             ---ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence               222222223366889999999966665556789999999776554433 3346789999999999888888899999


Q ss_pred             EeC
Q 003842          790 LWK  792 (792)
Q Consensus       790 IWd  792 (792)
                      +|+
T Consensus       259 ~~~  261 (270)
T 1rwi_B          259 KLT  261 (270)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            985

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.59  E-value=5.2e-13  Score=140.95  Aligned_cols=239  Identities=14%  Similarity=0.087  Sum_probs=177.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeEEeccCC-CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEeccc-CCCe
Q 003842          523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASV  600 (792)
Q Consensus       523 dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~-~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h-~~~V  600 (792)
                      .+++|++++.|+.|.+||.++++.+.++..+. ..+.++.++|+|++|+  +.++.|+.||. + ++.+..+..+ ...+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~-G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D-GRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T-SCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C-CCEEEEEcCCCCccc
Confidence            45789999999999999999999999998776 5789999999999888  45778999999 5 6677777764 3578


Q ss_pred             EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---------CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003842          601 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---------GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC  671 (792)
Q Consensus       601 ~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---------~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~  671 (792)
                      .++.+.++++.+++.++.++.|..+|. +++.+..+..         ....+++.++++.+++...++.|.+||.+ ++.
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            899999998766543333777888875 6777666541         12346788899999888889999999998 999


Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC------CceEEEEEeCCCCEEEEEEcC
Q 003842          672 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG------NKFHSCVFHPTYPSLLVIGCY  744 (792)
Q Consensus       672 ~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~------~~i~si~fspdg~~L~sgs~d  744 (792)
                      +.++... ..+.++.+.++|+++++++.+ .|..||..++   +.+..+....      ..+..++..++|..+++....
T Consensus       158 ~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g  233 (276)
T 3no2_A          158 LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG  233 (276)
T ss_dssp             EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred             EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence            9888764 456678889999999988888 8999999877   5555554321      237788889999877776321


Q ss_pred             --------CeEEEEEC-CCCcEE-EEccc--CCCeEEEE
Q 003842          745 --------QSLELWNM-SENKTM-TLTAH--EGLIAALA  771 (792)
Q Consensus       745 --------g~I~IwDl-~~~~~~-~~~~h--~~~V~sl~  771 (792)
                              +..+++++ .+++++ .+..+  -+.|.+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~  272 (276)
T 3no2_A          234 HDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC  272 (276)
T ss_dssp             TCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred             ccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence                    23456665 355555 33322  23455543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.59  E-value=4.4e-12  Score=139.85  Aligned_cols=244  Identities=11%  Similarity=0.065  Sum_probs=174.2

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeEEeccC-------CCCEEEEEECCCC
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSPSM  566 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs----------~Dg~I~vWdl~t~~~~~~l~~h-------~~~V~~i~fspdg  566 (792)
                      .+..+.....+  .++|+|||++|+++.          .++.|.+||..+++.+.++...       ......++|+|||
T Consensus        59 ~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG  136 (373)
T 2mad_H           59 ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN  136 (373)
T ss_pred             EEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC
Confidence            44555544444  999999999999886          3678999999999888876532       1335689999999


Q ss_pred             CeEEEEeC--CCcEEEEeCCCCCceeEE-ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----C
Q 003842          567 PRLATSSF--DKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----G  638 (792)
Q Consensus       567 ~~Lasgs~--Dg~V~IWdl~s~~~~i~~-~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~  638 (792)
                      ++|++++.  ++.|.++| .+ ++.+.. +.. ..   |+.+.++++..+++.+.||.+.+||. +++......     .
T Consensus       137 ~~l~v~n~~~~~~v~viD-~t-~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~  209 (373)
T 2mad_H          137 ADLLFFQFAAGPAVGLVV-QG-GSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLT  209 (373)
T ss_pred             CEEEEEecCCCCeEEEEE-CC-CCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccccc
Confidence            99998874  47899999 76 555555 432 22   35566777777778888999999999 877663322     1


Q ss_pred             C----eeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEecC----------CCCCeEEEEEcCCCCEEEEEeC---
Q 003842          639 G----TAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQG----------HTKPIDSVCWDPSGELLASVSE---  699 (792)
Q Consensus       639 ~----~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~--~~~~l~~----------h~~~V~sv~~spdg~~Las~s~---  699 (792)
                      .    .....+.++++.++..+.++.|.++|+....  .+..+..          .......++++++++.|++...   
T Consensus       210 ~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~  289 (373)
T 2mad_H          210 AAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS  289 (373)
T ss_pred             CCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCC
Confidence            1    1123566777777777788899999997652  2222221          1122445788999887777542   


Q ss_pred             --------CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEE
Q 003842          700 --------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMTL  760 (792)
Q Consensus       700 --------d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~~  760 (792)
                              +.|.++|+.+.   +.+..+.. ......++|+||++ .++++. .++.|.+||+.+++.+..
T Consensus       290 ~~~~~~~~~~V~VID~~t~---~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          290 AWKLHAAAKEVTSVTGLVG---QTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             cccccCCCCeEEEEECCCC---EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence                    27999999776   56666643 34688999999999 677776 478999999999998844

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.57  E-value=5.8e-13  Score=146.16  Aligned_cols=265  Identities=12%  Similarity=0.112  Sum_probs=183.7

Q ss_pred             cceeeeeeeecCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeEEeccCC-------CCEEEEEE
Q 003842          500 FSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHS-------SLITDVRF  562 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs----------~Dg~I~vWdl~t~~~~~~l~~h~-------~~V~~i~f  562 (792)
                      .+++.+..+.....+ . ++++|||++|+++.          .++.|.+||..+++.+.++....       .....++|
T Consensus        67 ~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~  144 (386)
T 3sjl_D           67 EAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL  144 (386)
T ss_dssp             TTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred             CCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEE
Confidence            344566666655555 4 99999999888775          36789999999999988875321       24567999


Q ss_pred             CCCCCeEEEEeC--CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEEeeC-
Q 003842          563 SPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFKG-  638 (792)
Q Consensus       563 spdg~~Lasgs~--Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~~~~-  638 (792)
                      +|||++|+++..  ++.|.|+|+.+ .+.+.++... +   |..+.|.+...+++.+.||.+.++++.. ++....... 
T Consensus       145 spDGk~lyVan~~~~~~VsVID~~t-~~vv~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~  219 (386)
T 3sjl_D          145 TPDGKTLLFYQFSPAPAVGVVDLEG-KAFKRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV  219 (386)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred             cCCCCEEEEEEcCCCCeEEEEECCC-CcEEEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce
Confidence            999999988874  68999999998 6666666422 1   1223355555566777899999999976 554321111 


Q ss_pred             ------Ce-eEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEec---------C-CCCCeEEEEEcCCCCEEEEEeC
Q 003842          639 ------GT-AQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQ---------G-HTKPIDSVCWDPSGELLASVSE  699 (792)
Q Consensus       639 ------~~-~~v~~sp~~~~lla~s~dg~I~i~D~~t~~--~~~~l~---------~-h~~~V~sv~~spdg~~Las~s~  699 (792)
                            .+ ....|....+.++..+.+|.|+++|+.+..  .+..+.         + ....+..++++++++.++....
T Consensus       220 ~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~  299 (386)
T 3sjl_D          220 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD  299 (386)
T ss_dssp             CSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred             eccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEec
Confidence                  11 113555445566667779999999997664  332221         0 1223445788999987777542


Q ss_pred             ----------C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEEc-CCeEEEEECCCCcEEEEcccCCC
Q 003842          700 ----------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGC-YQSLELWNMSENKTMTLTAHEGL  766 (792)
Q Consensus       700 ----------d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-~L~sgs~-dg~I~IwDl~~~~~~~~~~h~~~  766 (792)
                                . .|.++|+.+.   +.+..+... ..++.|+|++|++ +|+++.. ++.|.++|..+++.+......+.
T Consensus       300 ~~~~~~hk~~~~~V~viD~~t~---kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~  375 (386)
T 3sjl_D          300 QRDEWRHKTASRFVVVLDAKTG---ERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH  375 (386)
T ss_dssp             ECCTTCTTSCEEEEEEEETTTC---CEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred             cccccccCCCCCEEEEEECCCC---eEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC
Confidence                      2 7999999887   555555432 3678999999997 6777654 78999999999998865555555


Q ss_pred             eEEEEEeCC
Q 003842          767 IAALAVSTE  775 (792)
Q Consensus       767 V~sl~fspd  775 (792)
                      -+.|.+++|
T Consensus       376 p~~l~~s~d  384 (386)
T 3sjl_D          376 GPQVITTAD  384 (386)
T ss_dssp             SCCEEEECC
T ss_pred             CceeEECCc
Confidence            666777776

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.56  E-value=5.1e-13  Score=148.97  Aligned_cols=266  Identities=7%  Similarity=0.043  Sum_probs=187.4

Q ss_pred             CCCCEEEEEeCC-----CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe----------CCCcEEEEeCCCC
Q 003842          522 SDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNP  586 (792)
Q Consensus       522 pdg~~Lasgs~D-----g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----------~Dg~V~IWdl~s~  586 (792)
                      ++++++++....     +.|.++|..+++.+.++.....+  .++++||+++|+++.          .++.|.++|..+ 
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t-  158 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT-  158 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-
Confidence            466666665542     69999999999999999866665  899999999888886          367899999998 


Q ss_pred             CceeEEeccc-------CCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeEEEeeCCeeEEEEecCC-CEEEEEEc
Q 003842          587 GYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHL-GRYLAAAA  657 (792)
Q Consensus       587 ~~~i~~~~~h-------~~~V~sl~fspd~~~ll~sgs~-Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~-~~lla~s~  657 (792)
                      .+.+..+.-.       ......+.|+||+++++++... ++.|.++|+.+++.+..+..+.. ....|++ ..+++.+.
T Consensus       159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~  237 (426)
T 3c75_H          159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCR  237 (426)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEET
T ss_pred             CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcC
Confidence            5555555321       1234578999999988766543 68999999999999988775433 3344443 56677788


Q ss_pred             CCeEEEEECCCCeEEEEe----cCCCCCe-EEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC---------
Q 003842          658 ENVVSILDAETQACRLSL----QGHTKPI-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN---------  722 (792)
Q Consensus       658 dg~I~i~D~~t~~~~~~l----~~h~~~V-~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~---------  722 (792)
                      ||.+.+.+..+++.....    .....++ ..+.|.+++..++..+.. .|.+.|+..... ..+..+...         
T Consensus       238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~g~  316 (426)
T 3c75_H          238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERADDW  316 (426)
T ss_dssp             TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGGTE
T ss_pred             CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeecccccccccc
Confidence            999998898666555321    1112221 235678988877766666 899999865321 111111100         


Q ss_pred             -CCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-CCCcEE
Q 003842          723 -GNKFHSCVFHPTYPSLLVIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVK  789 (792)
Q Consensus       723 -~~~i~si~fspdg~~L~sgs~----------dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~-~LaSgs-~DG~I~  789 (792)
                       ......++++++++++++...          .+.|.++|+.+.+.+....-.....+++|++|++ +|+++. .++.|.
T Consensus       317 ~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~Vs  396 (426)
T 3c75_H          317 RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLH  396 (426)
T ss_dssp             EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred             ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence             011223689999998888753          3479999999999884443334688999999999 888888 489999


Q ss_pred             EeC
Q 003842          790 LWK  792 (792)
Q Consensus       790 IWd  792 (792)
                      |+|
T Consensus       397 VID  399 (426)
T 3c75_H          397 IYD  399 (426)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.56  E-value=2.1e-13  Score=162.85  Aligned_cols=265  Identities=11%  Similarity=-0.036  Sum_probs=170.8

Q ss_pred             cCCCCEEEEEeCCC-----eEEEEECCCCceeEEec------cCCCCEEEEEECCCCCeEEE-----EeCCCcEEEEeCC
Q 003842          521 SSDGKLLATGGHDK-----KAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLAT-----SSFDKTVRVWDAD  584 (792)
Q Consensus       521 spdg~~Lasgs~Dg-----~I~vWdl~t~~~~~~l~------~h~~~V~~i~fspdg~~Las-----gs~Dg~V~IWdl~  584 (792)
                      +++|++++....++     .|++.+...++....+.      +|...+..++|+|||++||.     |+.+..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            47898888776543     34555555554433332      35557999999999999884     3445689999999


Q ss_pred             CCCceeEEecccCCCe--EEEEEcCCCCeEEEEEeCCCc-------------EEEEEcCCCee--EEEee-----CCeeE
Q 003842          585 NPGYSLRTFMGHSASV--MSLDFHPNKDDLICSCDGDGE-------------IRYWSINNGSC--TRVFK-----GGTAQ  642 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V--~sl~fspd~~~ll~sgs~Dg~-------------I~iwdl~~~~~--~~~~~-----~~~~~  642 (792)
                      ++. .+.  ..+...+  ..++|+||++.++++ +.|..             |++|++.++..  ...+.     .....
T Consensus       156 tg~-~~~--~~~~~~~~~~~~~wspDg~~l~~~-~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~  231 (695)
T 2bkl_A          156 SGE-WSK--VDVIEGGKYATPKWTPDSKGFYYE-WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ  231 (695)
T ss_dssp             TCC-BCS--SCCBSCCTTCCCEECTTSSEEEEE-ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred             CCC-CcC--CcccCcccccceEEecCCCEEEEE-EecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence            843 320  1121222  689999999876654 44554             99999998762  22332     24567


Q ss_pred             EEEecCCCEEEEEEcCC----eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe---CC-eEEEEECCCCCCcc
Q 003842          643 MRFQPHLGRYLAAAAEN----VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS---ED-SVRVWTVGSGSEGE  714 (792)
Q Consensus       643 v~~sp~~~~lla~s~dg----~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s---~d-~I~IwDl~s~~~~~  714 (792)
                      +.|+|++.++++++.++    .|++||..+++... +..+...+....| ++|.+++...   .+ .|.+||+.++....
T Consensus       232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~  309 (695)
T 2bkl_A          232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARAS  309 (695)
T ss_dssp             EEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred             EEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccC
Confidence            89999999998888765    78888776654433 3345555666667 5566444443   13 89999997763211


Q ss_pred             eEEEeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEEC--CCCcEEEEccc-CCCeEEEEEeCCCCEEEEEe----CCC
Q 003842          715 CVHELSCN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNM--SENKTMTLTAH-EGLIAALAVSTETGYVASAS----HDK  786 (792)
Q Consensus       715 ~i~~~~~~-~~~i~si~fspdg~~L~sgs~dg~I~IwDl--~~~~~~~~~~h-~~~V~sl~fspdg~~LaSgs----~DG  786 (792)
                      ....+..+ ...+..++|+ ++..+++...++..+||.+  .......+..+ .+.|..++++++++.|+...    ..+
T Consensus       310 ~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~  388 (695)
T 2bkl_A          310 WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPR  388 (695)
T ss_dssp             CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEE
T ss_pred             CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence            22223333 4457888888 6677788888887666644  33333344444 66788889999998766332    246


Q ss_pred             cEEEeC
Q 003842          787 FVKLWK  792 (792)
Q Consensus       787 ~I~IWd  792 (792)
                      .|++||
T Consensus       389 ~v~~~d  394 (695)
T 2bkl_A          389 QIYKTS  394 (695)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            788875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.55  E-value=1.9e-11  Score=128.20  Aligned_cols=235  Identities=10%  Similarity=0.033  Sum_probs=162.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL  590 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~-~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i  590 (792)
                      ...+.+++++++|+++++...++.|.+||.+ ++.. ..+......+.+|++.+++.++++...++.|.+||. ++....
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~  133 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE  133 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE
Confidence            4568999999999988887778899999986 3322 222235567999999999988888777889999998 423222


Q ss_pred             EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE-ee---CCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003842          591 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FK---GGTAQMRFQPHLGRYLAAAAENVVSILDA  666 (792)
Q Consensus       591 ~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~-~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D~  666 (792)
                      .........+.++++.+++. ++++...++.|.+||. +++.... ..   .....+++.+++..+++...++.|.+||.
T Consensus       134 ~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          134 YELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             EECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             ecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence            22333456789999999874 5556666789999999 6665443 22   23557888888775555555789999999


Q ss_pred             CCCeEEE-EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003842          667 ETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY  744 (792)
Q Consensus       667 ~t~~~~~-~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d  744 (792)
                       +++... .+..+...+.+++++++|+++++...+ .|.+||.. + . .....+......+.++++ +++..++ ++..
T Consensus       212 -~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g-~-~~~~~~~~~~~~~~~i~~-~~g~l~v-~~~~  285 (299)
T 2z2n_A          212 -SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-N-I-IEEYPIQIKSAEPHGICF-DGETIWF-AMEC  285 (299)
T ss_dssp             -TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-T-E-EEEEECSSSSCCEEEEEE-CSSCEEE-EETT
T ss_pred             -CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-C-c-eEEEeCCCCCCccceEEe-cCCCEEE-EecC
Confidence             665433 233355678999999999977766454 99999983 2 1 111122344567889999 8777544 4446


Q ss_pred             CeEEEEECCCCc
Q 003842          745 QSLELWNMSENK  756 (792)
Q Consensus       745 g~I~IwDl~~~~  756 (792)
                      +.|..++..+++
T Consensus       286 ~~l~~~~~~~~~  297 (299)
T 2z2n_A          286 DKIGKLTLIKDN  297 (299)
T ss_dssp             TEEEEEEEC---
T ss_pred             CcEEEEEcCccc
Confidence            788888876654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.54  E-value=4.2e-12  Score=134.76  Aligned_cols=239  Identities=12%  Similarity=0.113  Sum_probs=165.7

Q ss_pred             ecCCCCeEEEEEcCCCCEEEE-------EeCCCeEEEEECCCCceeEEec----cCCCCEEEEEECCC-CCeEEEEeCCC
Q 003842          509 RASTSKVICCHFSSDGKLLAT-------GGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPS-MPRLATSSFDK  576 (792)
Q Consensus       509 ~~H~~~V~~lafspdg~~Las-------gs~Dg~I~vWdl~t~~~~~~l~----~h~~~V~~i~fspd-g~~Lasgs~Dg  576 (792)
                      ...-....+++|+++|+++++       +..++.|.+||..+++......    ++...+.+++++++ ++++++ +.++
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~   92 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRL   92 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTT
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCC
Confidence            444556789999999988887       5778999999988877643322    24567999999999 654444 4444


Q ss_pred             cEEEEeCCCCCceeEE-ecc----cCCCeEEEEEcCCCCeEEEEEeCC---------------CcEEEEEcCCCeeEEEe
Q 003842          577 TVRVWDADNPGYSLRT-FMG----HSASVMSLDFHPNKDDLICSCDGD---------------GEIRYWSINNGSCTRVF  636 (792)
Q Consensus       577 ~V~IWdl~s~~~~i~~-~~~----h~~~V~sl~fspd~~~ll~sgs~D---------------g~I~iwdl~~~~~~~~~  636 (792)
                      .|.+||.+  +..... ...    ....+.++++.+++. ++++...+               +.|..||.. ++.....
T Consensus        93 ~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (314)
T 1pjx_A           93 GLLVVQTD--GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD  168 (314)
T ss_dssp             EEEEEETT--SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred             CEEEEeCC--CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence            79999987  332222 111    124588999999976 44455444               567777766 5544332


Q ss_pred             e--CCeeEEEEe----cCCCEEEEEE-cCCeEEEEECC-CCe-----EEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-e
Q 003842          637 K--GGTAQMRFQ----PHLGRYLAAA-AENVVSILDAE-TQA-----CRLSLQGHT-KPIDSVCWDPSGELLASVSED-S  701 (792)
Q Consensus       637 ~--~~~~~v~~s----p~~~~lla~s-~dg~I~i~D~~-t~~-----~~~~l~~h~-~~V~sv~~spdg~~Las~s~d-~  701 (792)
                      .  .....++++    ++++.++++. .++.|.+||.+ +++     ....+..+. ..+..++++++|+++++...+ .
T Consensus       169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence            2  345678899    8887776665 57899999976 443     233344343 567899999999988887666 9


Q ss_pred             EEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 003842          702 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSEN  755 (792)
Q Consensus       702 I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~~~  755 (792)
                      |.+||..++.   .+..+..+...+.+++|++++++|++++. ++.|..|++...
T Consensus       249 i~~~d~~~g~---~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          249 IEVFGPDGGQ---PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEECTTCBS---CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEEEcCCCCc---EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            9999987553   33444455577899999999996666654 578999998653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.53  E-value=4.7e-13  Score=160.95  Aligned_cols=243  Identities=12%  Similarity=0.067  Sum_probs=163.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCc--------
Q 003842          511 STSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT--------  577 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs~D-----g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~--------  577 (792)
                      |...+..++|||||++||.+..+     ..|++||+++++.+... .+...+..++|+|| +.|+.++.|+.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            44468899999999999987654     46999999999876532 12222357899999 98888887654        


Q ss_pred             ------EEEEeCCCCCce-eEEec--ccCCCeEEEEEcCCCCeEEEEEeC----CCcEEEEEcCCC--eeEEEeeC---C
Q 003842          578 ------VRVWDADNPGYS-LRTFM--GHSASVMSLDFHPNKDDLICSCDG----DGEIRYWSINNG--SCTRVFKG---G  639 (792)
Q Consensus       578 ------V~IWdl~s~~~~-i~~~~--~h~~~V~sl~fspd~~~ll~sgs~----Dg~I~iwdl~~~--~~~~~~~~---~  639 (792)
                            |++|++.++... ...+.  .+...+..+.|+|||+.+++++..    +..|++||+.++  ++...+..   .
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                  899999764321 22232  333468899999999887766643    348999999877  41233322   2


Q ss_pred             eeEEEEecCCCEEEEEEcC----CeEEEEECCCC--eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC-CCC
Q 003842          640 TAQMRFQPHLGRYLAAAAE----NVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG-SGS  711 (792)
Q Consensus       640 ~~~v~~sp~~~~lla~s~d----g~I~i~D~~t~--~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~-s~~  711 (792)
                      .... +.++++.|++.+.+    +.|.+||+.++  .....+..+...+..++|+ ++.++++...+ ..+||.+. ++ 
T Consensus       319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g-  395 (741)
T 1yr2_A          319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG-  395 (741)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS-
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence            2223 45889998888764    46999999884  3444444455557778887 55667777666 55555443 22 


Q ss_pred             CcceEEEeec-CCCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCcEEEE
Q 003842          712 EGECVHELSC-NGNKFHSCVFHPTYPSLLVIGC----YQSLELWNMSENKTMTL  760 (792)
Q Consensus       712 ~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~----dg~I~IwDl~~~~~~~~  760 (792)
                        ..+..+.. ....+..+.++|+++.|+....    .+.|++||+.+++...+
T Consensus       396 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l  447 (741)
T 1yr2_A          396 --KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW  447 (741)
T ss_dssp             --CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred             --CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence              34455544 3566888999999876664433    25899999998875444

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.50  E-value=8.7e-12  Score=132.27  Aligned_cols=236  Identities=7%  Similarity=-0.013  Sum_probs=161.0

Q ss_pred             ccCCCCEEEEEECCCCCeEEE-------EeCCCcEEEEeCCCCCceeEEecc-----cCCCeEEEEEcCCCCeEEEEEeC
Q 003842          551 EEHSSLITDVRFSPSMPRLAT-------SSFDKTVRVWDADNPGYSLRTFMG-----HSASVMSLDFHPNKDDLICSCDG  618 (792)
Q Consensus       551 ~~h~~~V~~i~fspdg~~Las-------gs~Dg~V~IWdl~s~~~~i~~~~~-----h~~~V~sl~fspd~~~ll~sgs~  618 (792)
                      ...-....+++|++++.++++       +..++.|.+||..+. .. ..+..     +...+.++++++++..++++.. 
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g-~~-~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-   90 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG-KK-TVICKPEVNGYGGIPAGCQCDRDANQLFVADM-   90 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC-CE-EEEECCEETTEECCEEEEEECSSSSEEEEEET-
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC-cE-EEEEecccCCCCCCCceEEEecCCCcEEEEEC-
Confidence            334456789999999988877       677899999998763 32 22222     4567899999998334554443 


Q ss_pred             CCcEEEEEcCCCeeEEE-ee-------CCeeEEEEecCCCEEEEEEcC---------------CeEEEEECCCCeEEEEe
Q 003842          619 DGEIRYWSINNGSCTRV-FK-------GGTAQMRFQPHLGRYLAAAAE---------------NVVSILDAETQACRLSL  675 (792)
Q Consensus       619 Dg~I~iwdl~~~~~~~~-~~-------~~~~~v~~sp~~~~lla~s~d---------------g~I~i~D~~t~~~~~~l  675 (792)
                      ++.|.+||.. ++.... ..       .....+++.+++..+++...+               +.|..||.. ++.....
T Consensus        91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (314)
T 1pjx_A           91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD  168 (314)
T ss_dssp             TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred             CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence            4579999998 765443 22       135678999987766655544               578888876 5443322


Q ss_pred             cCCCCCeEEEEEc----CCCCEEEEEe-CC-eEEEEECC-CCCC--cceEEEeecCC-CceEEEEEeCCCCEEEEEEcCC
Q 003842          676 QGHTKPIDSVCWD----PSGELLASVS-ED-SVRVWTVG-SGSE--GECVHELSCNG-NKFHSCVFHPTYPSLLVIGCYQ  745 (792)
Q Consensus       676 ~~h~~~V~sv~~s----pdg~~Las~s-~d-~I~IwDl~-s~~~--~~~i~~~~~~~-~~i~si~fspdg~~L~sgs~dg  745 (792)
                      . +......++|+    ++++.|+.+. .+ .|.+||+. .+..  ...+..+..+. ..+..++++++|.++++...++
T Consensus       169 ~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~  247 (314)
T 1pjx_A          169 T-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             E-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             c-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence            2 33456889999    9997665554 44 89999986 2211  11223333333 5678899999998777777888


Q ss_pred             eEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE-eCCCcEEEeC
Q 003842          746 SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK  792 (792)
Q Consensus       746 ~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSg-s~DG~I~IWd  792 (792)
                      .|.+||..+++.+ .+..+...+.+++|++++++|+.+ ..++.|..|+
T Consensus       248 ~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence            9999999866544 455566789999999999955544 4567787764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.49  E-value=5.4e-12  Score=133.09  Aligned_cols=207  Identities=11%  Similarity=0.079  Sum_probs=161.1

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCceeEEecccC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC----C
Q 003842          565 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----G  639 (792)
Q Consensus       565 dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~-~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~  639 (792)
                      .+++|++++.|+.|.+||.++ ++.+..+..+. ..+.++.+.|+++ +++  +.++.|+.||. +++.+..++.    .
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~t-G~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~   78 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDT-KEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGRELWNIAAPAGCE   78 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTT-TEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred             CCcEEEeeCCCCEEEEEECCC-CeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence            356899999999999999977 67777777665 5788999999986 444  34788999999 7988888874    3


Q ss_pred             eeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecC------CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 003842          640 TAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG------HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS  711 (792)
Q Consensus       640 ~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~------h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~  711 (792)
                      +..+.+.++++.+++.+. ++.|..+|. +++.+..+..      +......+++.++|++|++...+ .|.+||.. + 
T Consensus        79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G-  155 (276)
T 3no2_A           79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G-  155 (276)
T ss_dssp             EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-
T ss_pred             ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-
Confidence            456788999999998887 788888886 6777666542      11235567789999999998887 99999986 5 


Q ss_pred             CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccC------CCeEEEEEeCCCCEEEEE
Q 003842          712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE------GLIAALAVSTETGYVASA  782 (792)
Q Consensus       712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~------~~V~sl~fspdg~~LaSg  782 (792)
                        +.+..+... ..+.++.+.++++.++++..++.|..||..+++.+ .+..+.      ..+..+...++|.++++.
T Consensus       156 --~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          156 --QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             --CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             --CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence              566666554 34566788899999988888889999999988887 343222      237888889999988876

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.49  E-value=1.4e-12  Score=156.92  Aligned_cols=266  Identities=14%  Similarity=0.053  Sum_probs=168.6

Q ss_pred             cCCCCEEEEEeCCCe---EEEE--ECC---CCceeEEe------ccCCCCEEEEEECCCCCeEEEEeCC-----CcEEEE
Q 003842          521 SSDGKLLATGGHDKK---AVLW--HTD---TLKSKTNL------EEHSSLITDVRFSPSMPRLATSSFD-----KTVRVW  581 (792)
Q Consensus       521 spdg~~Lasgs~Dg~---I~vW--dl~---t~~~~~~l------~~h~~~V~~i~fspdg~~Lasgs~D-----g~V~IW  581 (792)
                      +|||++++....++.   -.||  +..   .++....+      .+|...+..++|+|||++|+.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            389998887765433   4444  444   33333222      1233468899999999999887654     359999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC-------------cEEEEEcCCCee--EEEeeC-----Cee
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-------------EIRYWSINNGSC--TRVFKG-----GTA  641 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg-------------~I~iwdl~~~~~--~~~~~~-----~~~  641 (792)
                      |+.+ +..+.. ..+...+..++|+|| +.++++...+.             .|++|++.++..  ...+..     ...
T Consensus       195 dl~t-g~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~  271 (741)
T 1yr2_A          195 GVAD-GKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH  271 (741)
T ss_dssp             ETTT-CCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred             ECCC-CCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence            9997 444332 112222357899999 77776654322             399999987652  223322     256


Q ss_pred             EEEEecCCCEEEEEEcCC-----eEEEEECCCC--eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-----eEEEEECCC
Q 003842          642 QMRFQPHLGRYLAAAAEN-----VVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSED-----SVRVWTVGS  709 (792)
Q Consensus       642 ~v~~sp~~~~lla~s~dg-----~I~i~D~~t~--~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-----~I~IwDl~s  709 (792)
                      .+.|+|++.+++..+.++     .|++||+.++  ++...+..+...+.... +++|+.|+..+.+     .|.+||+.+
T Consensus       272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            788999999988887643     8999999877  31344444555555553 4889888877653     599999876


Q ss_pred             CCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcEEEEcc-cCCCeEEEEEeCCCCEEEEE-e--
Q 003842          710 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTMTLTA-HEGLIAALAVSTETGYVASA-S--  783 (792)
Q Consensus       710 ~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~~~~~-h~~~V~sl~fspdg~~LaSg-s--  783 (792)
                      +. ......+..+...+..++|. ++..+++...++..+||  ++..+....+.. +.+.|..++++++++.|+.. +  
T Consensus       351 ~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~  428 (741)
T 1yr2_A          351 ST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSF  428 (741)
T ss_dssp             SS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEET
T ss_pred             Cc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence            42 12233334444556677777 55567777778865555  554443334443 46778899999998755532 2  


Q ss_pred             -CCCcEEEeC
Q 003842          784 -HDKFVKLWK  792 (792)
Q Consensus       784 -~DG~I~IWd  792 (792)
                       ..+.|++||
T Consensus       429 ~~P~~i~~~d  438 (741)
T 1yr2_A          429 TQPATVLALD  438 (741)
T ss_dssp             TEEEEEEEEE
T ss_pred             CCCCEEEEEE
Confidence             246788775

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.48  E-value=1.5e-12  Score=141.59  Aligned_cols=265  Identities=8%  Similarity=-0.014  Sum_probs=173.7

Q ss_pred             eeeeeeecCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeEEe-------ccCCCCEEEEEECCCCCeEEEEe
Q 003842          503 KEANSVRASTSKVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKTNL-------EEHSSLITDVRFSPSMPRLATSS  573 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs--~Dg~I~vWdl~t~~~~~~l-------~~h~~~V~~i~fspdg~~Lasgs  573 (792)
                      +.+..+.   ..+..++++++|+++++..  .++.++||.+.+++.. .+       ..+...+.+|+|+++++++++-.
T Consensus        10 ~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~   85 (343)
T 2qe8_A           10 EVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDN   85 (343)
T ss_dssp             EEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEEC
T ss_pred             EEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcC
Confidence            4444443   6799999999999988864  2343556655455432 22       23557899999999987666554


Q ss_pred             C-----CCcEEEEeCCCCCceeEEecc------cCCCeEEEEEcCCCCeEEEEEe---CCCcEEEEEcCCCeeEEEeeCC
Q 003842          574 F-----DKTVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGG  639 (792)
Q Consensus       574 ~-----Dg~V~IWdl~s~~~~i~~~~~------h~~~V~sl~fspd~~~ll~sgs---~Dg~I~iwdl~~~~~~~~~~~~  639 (792)
                      .     ++.|.+||+.+ +..+..+..      +...+..|++.+++..++++..   .++.|.+||+.+++..+.+..+
T Consensus        86 g~~~~~~~~i~~~d~~t-g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~  164 (343)
T 2qe8_A           86 GNQSKSVPKLVAWDTLN-NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGY  164 (343)
T ss_dssp             HHHHTSCCEEEEEETTT-TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTC
T ss_pred             CCCcCCCCeEEEEECCC-CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCC
Confidence            3     57899999987 454554432      2245689999987666766665   6889999999988877665431


Q ss_pred             --ee--EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCC---C
Q 003842          640 --TA--QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGS---G  710 (792)
Q Consensus       640 --~~--~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s---~  710 (792)
                        ..  ...+..++..+.+...++.+..|.              ..+..|+|+|+|++|+++...  .|..++...   +
T Consensus       165 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~  230 (343)
T 2qe8_A          165 PGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL  230 (343)
T ss_dssp             TTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT
T ss_pred             CcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC
Confidence              10  133444544455555566654442              236789999999988887765  555555321   1


Q ss_pred             C--Ccc---eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc--cCCCeEEEEEeCCCCEEEEEe
Q 003842          711 S--EGE---CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASAS  783 (792)
Q Consensus       711 ~--~~~---~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~--h~~~V~sl~fspdg~~LaSgs  783 (792)
                      .  ...   .+.. .++......++++++|..+++...++.|.+||..+++...+..  +...+.+++|.+++.++++.+
T Consensus       231 ~~~~~~~~~~~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          231 QLTDAELGSKIER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             TCCHHHHHTTCEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             CCChhhhhcceEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence            0  000   0111 1223345678999999888887788899999995566543332  345789999999998888876


Q ss_pred             CCCc
Q 003842          784 HDKF  787 (792)
Q Consensus       784 ~DG~  787 (792)
                      ..+.
T Consensus       310 ~~~~  313 (343)
T 2qe8_A          310 QLHH  313 (343)
T ss_dssp             CGGG
T ss_pred             cccc
Confidence            5433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.48  E-value=3.3e-11  Score=134.51  Aligned_cols=230  Identities=11%  Similarity=0.091  Sum_probs=164.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC--cEEEEeCCCCCcee
Q 003842          513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSL  590 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg--~V~IWdl~s~~~~i  590 (792)
                      ....+|+|+++|+++++...++.|++||.+++.....+.... ... ++|+++++.|+++..++  .|.+|+..... ..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~-~~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW-AP  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT-CE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc-ee
Confidence            468899999999988887778999999999887766555433 333 99999999999988866  78888887633 33


Q ss_pred             EEe----cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE----eeC--Ce--e-EEEEecCCCEEEEEEc
Q 003842          591 RTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKG--GT--A-QMRFQPHLGRYLAAAA  657 (792)
Q Consensus       591 ~~~----~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~~--~~--~-~v~~sp~~~~lla~s~  657 (792)
                      ..+    ......+.+++++|++..+++ +..++.|+.||..++.....    ..+  ..  . .++|+|+++.++++..
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence            333    224566789999996566665 67788999999987764332    111  11  2 8999997777766654


Q ss_pred             -CCeEEEEECCCCeEEEEecCCC---------------CCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceEEEe
Q 003842          658 -ENVVSILDAETQACRLSLQGHT---------------KPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHEL  719 (792)
Q Consensus       658 -dg~I~i~D~~t~~~~~~l~~h~---------------~~V~sv~~spdg~~Las~s-~d-~I~IwDl~s~~~~~~i~~~  719 (792)
                       ++.|+.||....  +..+.++.               .....++|+++|+++++.. .+ .|++||+.++    .+..+
T Consensus       287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G----~v~~~  360 (409)
T 3hrp_A          287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG----YVSTV  360 (409)
T ss_dssp             TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT----EEEEE
T ss_pred             CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC----EEEEE
Confidence             689999997754  22232221               3478899999999777776 66 9999997655    23333


Q ss_pred             ecC---------------CCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003842          720 SCN---------------GNKFHSCVFHPTYPSLLVIGCYQSLELWNM  752 (792)
Q Consensus       720 ~~~---------------~~~i~si~fspdg~~L~sgs~dg~I~IwDl  752 (792)
                      .++               -.....+++++++.++++-..++.|+.+++
T Consensus       361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            332               245789999999766666566678887765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.46  E-value=3e-11  Score=134.79  Aligned_cols=228  Identities=13%  Similarity=0.062  Sum_probs=160.6

Q ss_pred             CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC--cEEEEEcCCCee
Q 003842          555 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSC  632 (792)
Q Consensus       555 ~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg--~I~iwdl~~~~~  632 (792)
                      .....|+|+++++++++...++.|++||+.+ +........ ..... ++|++++..++ +++.++  .|.+|+...+..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~-g~~~~~~~~-~~~~~-ia~~~~g~~l~-~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDD-NKVTTVHPG-FKGGK-PAVTKDKQRVY-SIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTT-TEEEEEEET-CCBCB-CEECTTSSEEE-EEBSSTTCEEEEEEGGGTTC
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCC-CEEEEeecc-CCCCc-eeEecCCCcEE-EEecCCCceEEEEEcCCCce
Confidence            4688999999998777777789999999986 333333333 33333 99999987655 555544  799999876654


Q ss_pred             EEEe-------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE----ecCCCCCe--EEEEEcCCCC-EEEEEe
Q 003842          633 TRVF-------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS----LQGHTKPI--DSVCWDPSGE-LLASVS  698 (792)
Q Consensus       633 ~~~~-------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~----l~~h~~~V--~sv~~spdg~-~Las~s  698 (792)
                      ...+       ......++++|+++.|+++..++.|+.||..++.....    ..++....  ..++|+|++. ++++..
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence            3333       13456789999778888877788999999988764333    22222222  3899999644 444444


Q ss_pred             CC-eEEEEECCCCCCcceEEEeecC---------------CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEEc
Q 003842          699 ED-SVRVWTVGSGSEGECVHELSCN---------------GNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLT  761 (792)
Q Consensus       699 ~d-~I~IwDl~s~~~~~~i~~~~~~---------------~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~~~  761 (792)
                      .+ .|+.|+....     +..+.+.               -.....++|+++|.++++-. .++.|+.||+.++....+.
T Consensus       287 ~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~  361 (409)
T 3hrp_A          287 NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA  361 (409)
T ss_dssp             TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence            44 8999987532     2222222               23478999999999665555 6789999998888877666


Q ss_pred             cc---------------CCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          762 AH---------------EGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       762 ~h---------------~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ++               -.....|++++++.++++-..+++|+.+
T Consensus       362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred             CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence            55               2468899999998877777778888765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.46  E-value=5.4e-12  Score=140.70  Aligned_cols=251  Identities=12%  Similarity=0.139  Sum_probs=178.8

Q ss_pred             CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeEEeccC-------CCCEEEEE
Q 003842          499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH-------SSLITDVR  561 (792)
Q Consensus       499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs----------~Dg~I~vWdl~t~~~~~~l~~h-------~~~V~~i~  561 (792)
                      ..+.+.+..+..-..+  .++|+|||++|+++.          .++.|.++|..+++.+.++.-.       ......+.
T Consensus       106 ~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~  183 (426)
T 3c75_H          106 GSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNA  183 (426)
T ss_dssp             TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSE
T ss_pred             CCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEE
Confidence            3445566666655555  899999999888876          3678999999999998887532       23356789


Q ss_pred             ECCCCCeEEEEeC--CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE----
Q 003842          562 FSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----  635 (792)
Q Consensus       562 fspdg~~Lasgs~--Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~----  635 (792)
                      |+||+++|+++..  ++.|.++|+.+ .+.+..+.-..    +....|++...+++.+.||.+.+.++.+++....    
T Consensus       184 ~spDGk~lyV~n~~~~~~VsVID~~t-~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~  258 (426)
T 3c75_H          184 LTPDNKNLLFYQFSPAPAVGVVDLEG-KTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEV  258 (426)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCC
T ss_pred             EcCCCCEEEEEecCCCCeEEEEECCC-CeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeee
Confidence            9999999999874  57899999998 55666655321    1344565556666777899999999866665532    


Q ss_pred             eeCC----eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE--EecC----------CCCCeEEEEEcCCCCEEEEEeC
Q 003842          636 FKGG----TAQMRFQPHLGRYLAAAAENVVSILDAETQACRL--SLQG----------HTKPIDSVCWDPSGELLASVSE  699 (792)
Q Consensus       636 ~~~~----~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~--~l~~----------h~~~V~sv~~spdg~~Las~s~  699 (792)
                      +...    ...+.+.++++.+++....+.|.++|........  .+..          .......++++++++++++...
T Consensus       259 ~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~  338 (426)
T 3c75_H          259 FHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVD  338 (426)
T ss_dssp             CSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred             eccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEec
Confidence            2111    1235678899998888889999999997654321  1110          0111223789999887666531


Q ss_pred             -----------CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEE
Q 003842          700 -----------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMTL  760 (792)
Q Consensus       700 -----------d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~~  760 (792)
                                 +.|.++|+.+.   +.+..+... .....++|+||++ ++++.. .++.|.|+|+.+++.+..
T Consensus       339 ~~~~gthk~~s~~VsVID~~T~---kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t  408 (426)
T 3c75_H          339 QRDEWKHKAASRFVVVLNAETG---ERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS  408 (426)
T ss_dssp             ECCTTCTTSCEEEEEEEETTTC---CEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             ccccccccCCCCEEEEEECCCC---eEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence                       27999999887   555555432 2578999999999 888888 489999999999998843

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.44  E-value=3e-12  Score=152.79  Aligned_cols=244  Identities=11%  Similarity=0.035  Sum_probs=166.7

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCc-------
Q 003842          510 ASTSKVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT-------  577 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs-----~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~-------  577 (792)
                      +|...|..++|||||++||.+.     ....|+|||+++++.+.... +......++|+ |++.|+.++.+..       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            4566788999999999998643     23579999999998654311 11113567899 9999999888743       


Q ss_pred             ------EEEEeCCCCCc---eeEEecc-cCCCeEEEEEcCCCCeEEEEEeCC---CcEEEEEcCCCe-eEEEeeCC--ee
Q 003842          578 ------VRVWDADNPGY---SLRTFMG-HSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGS-CTRVFKGG--TA  641 (792)
Q Consensus       578 ------V~IWdl~s~~~---~i~~~~~-h~~~V~sl~fspd~~~ll~sgs~D---g~I~iwdl~~~~-~~~~~~~~--~~  641 (792)
                            |++|++.+...   .+..... |...+.++.|+||++.++++...+   ..|++||+.++. ....+...  ..
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                  99999987443   2222233 455678999999999888776543   589999998763 22333221  12


Q ss_pred             EEEEecCCCEEEEEEcC----CeEEEEECCCCeE--EEEecCCCCCeEEEEEcCCCCEEEEEeC-C---eEEEEECCCCC
Q 003842          642 QMRFQPHLGRYLAAAAE----NVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSE-D---SVRVWTVGSGS  711 (792)
Q Consensus       642 ~v~~sp~~~~lla~s~d----g~I~i~D~~t~~~--~~~l~~h~~~V~sv~~spdg~~Las~s~-d---~I~IwDl~s~~  711 (792)
                      ...++++++.++..+..    +.|.++|+.++..  ...+..|...+.  .|++++++|+.... +   .|++||+..+ 
T Consensus       284 ~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-  360 (693)
T 3iuj_A          284 VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-  360 (693)
T ss_dssp             EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred             EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence            22377788888776653    5899999988643  234555655555  88898988776653 3   6899998643 


Q ss_pred             CcceEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCcEEEEc
Q 003842          712 EGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTLT  761 (792)
Q Consensus       712 ~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~d----g~I~IwDl~~~~~~~~~  761 (792)
                         ....+.. ....+..+.++++++.|+....+    +.|+.||+.+++...+.
T Consensus       361 ---~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~  412 (693)
T 3iuj_A          361 ---RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR  412 (693)
T ss_dssp             ---EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred             ---eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence               3333332 33456777888888877776655    79999999888755443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.44  E-value=3.9e-12  Score=140.03  Aligned_cols=173  Identities=12%  Similarity=0.091  Sum_probs=139.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------eeE-EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---------SKT-NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~---------~~~-~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      .+..+++++...+|++|+.++ ++||++++..         ... ....+.. |+.|+|  |+++|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            689999999999999999884 5669876433         111 2223556 999999  88999999 8899999999


Q ss_pred             CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003842          584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI  663 (792)
Q Consensus       584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i  663 (792)
                      .+.. .......|...|.++.+.+.  . ++++..||.|.+||+.++.... +...+.+++|+|++  ++++..||.|++
T Consensus       114 ~sl~-~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~-~~~~Vs~v~WSpkG--~~vg~~dg~i~~  186 (388)
T 1xip_A          114 EELS-EFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ-LAQNVTSFDVTNSQ--LAVLLKDRSFQS  186 (388)
T ss_dssp             SSTT-CEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE-EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred             hhhh-ccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc-ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence            8743 45556677888988888755  2 6678899999999999887654 56789999999998  788999999999


Q ss_pred             EECCCCeE--EEEe------c---CCCCCeEEEEEcCCCCEEEEEe
Q 003842          664 LDAETQAC--RLSL------Q---GHTKPIDSVCWDPSGELLASVS  698 (792)
Q Consensus       664 ~D~~t~~~--~~~l------~---~h~~~V~sv~~spdg~~Las~s  698 (792)
                      |+.+...+  ..++      .   +|...|.+|+|.+++.++++-.
T Consensus       187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          187 FAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            99988876  5566      3   3778899999999999888743

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.43  E-value=3e-10  Score=119.00  Aligned_cols=232  Identities=12%  Similarity=-0.004  Sum_probs=163.7

Q ss_pred             CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 003842          553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC  632 (792)
Q Consensus       553 h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~  632 (792)
                      ....+.+|++.+++.++++...++.|.+||.. .......+......+.+|++.+++. ++++...++.|..||.. ++.
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-CCe
Confidence            45678999999999888877788999999987 2322222333446789999998875 55566667889999988 554


Q ss_pred             EEE-ee---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE-EEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEE
Q 003842          633 TRV-FK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR-LSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT  706 (792)
Q Consensus       633 ~~~-~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~-~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwD  706 (792)
                      ... ..   .....+++.+++..+++...++.|..||.. ++.. ..+......+.+++++++|+++++...+ .|.+||
T Consensus        95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  173 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT  173 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence            322 11   345678888887666655557899999988 5544 3333345678999999999977766655 899999


Q ss_pred             CCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEE--cccCCCeEEEEEeCCCCEEEEEeC
Q 003842          707 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL--TAHEGLIAALAVSTETGYVASASH  784 (792)
Q Consensus       707 l~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~--~~h~~~V~sl~fspdg~~LaSgs~  784 (792)
                      . ++.. . ..........+..+++.+++..+++....+.|.+||. +++...+  ..+...+.+++++++|+++++...
T Consensus       174 ~-~g~~-~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  249 (300)
T 2qc5_A          174 N-TGKL-E-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG  249 (300)
T ss_dssp             T-TCCE-E-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred             C-CCcE-E-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC
Confidence            8 3321 1 1222234456889999999976665555678999998 5554433  345567899999999987776656


Q ss_pred             CCcEEEeC
Q 003842          785 DKFVKLWK  792 (792)
Q Consensus       785 DG~I~IWd  792 (792)
                      ++.|.+||
T Consensus       250 ~~~i~~~~  257 (300)
T 2qc5_A          250 ANQIGRIT  257 (300)
T ss_dssp             TTEEEEEC
T ss_pred             CCeEEEEC
Confidence            78888875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.42  E-value=2.1e-12  Score=141.71  Aligned_cols=260  Identities=9%  Similarity=0.029  Sum_probs=177.6

Q ss_pred             CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeEEeccC-------CCCEEEEE
Q 003842          499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH-------SSLITDVR  561 (792)
Q Consensus       499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs----------~Dg~I~vWdl~t~~~~~~l~~h-------~~~V~~i~  561 (792)
                      ..+++.+.++.....+  .++|+|||++|+++.          .++.|.+||+.+++.+.++...       ......++
T Consensus        53 ~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia  130 (368)
T 1mda_H           53 AGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG  130 (368)
T ss_dssp             TTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred             CCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEE
Confidence            3445666777655556  799999999998886          3688999999999999998643       13456899


Q ss_pred             ECCCCCeEEEEeC--CCcEEE--EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-----Cee
Q 003842          562 FSPSMPRLATSSF--DKTVRV--WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-----GSC  632 (792)
Q Consensus       562 fspdg~~Lasgs~--Dg~V~I--Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-----~~~  632 (792)
                      |+|||++|+++..  +..|.+  +|+.+    +..+.. .+.   +.+.|++...+++.+.||.+.+.|+.+     ++.
T Consensus       131 ~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v  202 (368)
T 1mda_H          131 NCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV  202 (368)
T ss_dssp             ECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred             EcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeE
Confidence            9999999999875  456888  88876    333321 111   224566666777778899999999987     443


Q ss_pred             EE----EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEecCC----------CCCeEEEEEcCCCCEEEE
Q 003842          633 TR----VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGH----------TKPIDSVCWDPSGELLAS  696 (792)
Q Consensus       633 ~~----~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~--~~~~~l~~h----------~~~V~sv~~spdg~~Las  696 (792)
                      ..    .+..+..... .++++.++..+. +.|.+.|..+.  +.+..+...          ......++|+++++++++
T Consensus       203 ~~~~t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV  280 (368)
T 1mda_H          203 GAQCTGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             CCCSCTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             EEEeeeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence            31    1111111123 777788777777 99999999754  233322211          111223789999987775


Q ss_pred             E-e---C------CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE-EEEE-cCCeEEEEECCCCcEEEEcccC
Q 003842          697 V-S---E------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL-LVIG-CYQSLELWNMSENKTMTLTAHE  764 (792)
Q Consensus       697 ~-s---~------d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L-~sgs-~dg~I~IwDl~~~~~~~~~~h~  764 (792)
                      + .   .      +.+.+||+.+.   +.+..+.... ....++|++|++++ ++.. .++.|.++|+.+++.+....-.
T Consensus       281 ~~~~~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          281 LTVEHSRSCLAAAENTSSVTASVG---QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSC---CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             EeccccCcccccCCCEEEEECCCC---eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence            4 2   2      36669999887   4555554332 68899999999854 4445 4899999999999998655555


Q ss_pred             CCeEEEEEeC
Q 003842          765 GLIAALAVST  774 (792)
Q Consensus       765 ~~V~sl~fsp  774 (792)
                      .....+++.+
T Consensus       357 ~~P~~i~~~~  366 (368)
T 1mda_H          357 KGPESLSVQN  366 (368)
T ss_dssp             SCCCEEECCC
T ss_pred             CCCCEEEeec
Confidence            5566777654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.41  E-value=3.8e-10  Score=119.72  Aligned_cols=229  Identities=13%  Similarity=0.118  Sum_probs=155.6

Q ss_pred             eecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          508 VRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       508 l~~H~~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      +..+..-..+..|++++ .++++...++.|+.||..+++.. .+ .....+.+++|+++++++++ . ++.|.+||.++ 
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~-   82 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE-   82 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT-
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCC-
Confidence            33445557789999954 45666667899999999887653 23 24567999999999985554 4 56799999986 


Q ss_pred             CceeEEecc----cCCCeEEEEEcCCCCeEEEEEeC--------CCcEEEEEcCC-CeeEEEee--CCeeEEEEecCCCE
Q 003842          587 GYSLRTFMG----HSASVMSLDFHPNKDDLICSCDG--------DGEIRYWSINN-GSCTRVFK--GGTAQMRFQPHLGR  651 (792)
Q Consensus       587 ~~~i~~~~~----h~~~V~sl~fspd~~~ll~sgs~--------Dg~I~iwdl~~-~~~~~~~~--~~~~~v~~sp~~~~  651 (792)
                      +........    ....+.++++.+++..++.+...        .....+|.+.. ++......  .....++|+++++.
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~  162 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKI  162 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCE
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCE
Confidence            332221111    12457899999998744433322        12344555443 33332222  34567999999988


Q ss_pred             EEEEEc-CCeEEEEEC--CCCeE-----EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC
Q 003842          652 YLAAAA-ENVVSILDA--ETQAC-----RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN  722 (792)
Q Consensus       652 lla~s~-dg~I~i~D~--~t~~~-----~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~  722 (792)
                      ++++.. ++.|.+||+  .++..     ...+..+......++++++|+++++...+ .|.+||..++   +.+..+...
T Consensus       163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---~~~~~i~~p  239 (297)
T 3g4e_A          163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---KRLQTVKLP  239 (297)
T ss_dssp             EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---CEEEEEECS
T ss_pred             EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---eEEEEEECC
Confidence            766654 789999987  45533     22333334567899999999988877766 8999998766   566677766


Q ss_pred             CCceEEEEEe-CCCCEEEEEEcC
Q 003842          723 GNKFHSCVFH-PTYPSLLVIGCY  744 (792)
Q Consensus       723 ~~~i~si~fs-pdg~~L~sgs~d  744 (792)
                      ...+++|+|. |+++.|++++..
T Consensus       240 ~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          240 VDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             SSBEEEEEEESGGGCEEEEEEBC
T ss_pred             CCCceEEEEeCCCCCEEEEEcCC
Confidence            6789999998 898888777653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.41  E-value=1.9e-10  Score=122.10  Aligned_cols=227  Identities=10%  Similarity=0.040  Sum_probs=152.5

Q ss_pred             eccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 003842          550 LEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN  628 (792)
Q Consensus       550 l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~  628 (792)
                      +..+.....+..|++++. ++++...++.|+.||..+.. . ..+ .....+.++++++++. ++++ . +..|.+||..
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~-~-~~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~   81 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ-V-QRV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNWK   81 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-E-EEE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETT
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc-E-EEE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEECC
Confidence            334455667889999544 56666678899999998633 2 223 3457899999999987 4433 3 6789999999


Q ss_pred             CCeeEEEeeC-------CeeEEEEecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 003842          629 NGSCTRVFKG-------GTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS  690 (792)
Q Consensus       629 ~~~~~~~~~~-------~~~~v~~sp~~~~lla~s~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd  690 (792)
                      +++.......       ....+++.+++..+++...           .+.|+.+|.. ++... +..+....+.++|+|+
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spd  159 (297)
T 3g4e_A           82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLD  159 (297)
T ss_dssp             TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTT
T ss_pred             CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCC
Confidence            8876543321       2456889999875554432           2345555553 33322 2223345678999999


Q ss_pred             CCEEEEEeC-C-eEEEEECC--CCCC--cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEccc
Q 003842          691 GELLASVSE-D-SVRVWTVG--SGSE--GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH  763 (792)
Q Consensus       691 g~~Las~s~-d-~I~IwDl~--s~~~--~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h  763 (792)
                      ++.|+.+.. + .|.+||+.  ++..  ...+..+.........+++.++|.++++....+.|.+||..+++.+ .+..+
T Consensus       160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p  239 (297)
T 3g4e_A          160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP  239 (297)
T ss_dssp             SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred             CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence            997765543 3 89999973  3321  1222333333456789999999987777777789999999988876 55556


Q ss_pred             CCCeEEEEEe-CCCCEEEEEeC
Q 003842          764 EGLIAALAVS-TETGYVASASH  784 (792)
Q Consensus       764 ~~~V~sl~fs-pdg~~LaSgs~  784 (792)
                      ...+++++|. ||++.|+.++.
T Consensus       240 ~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          240 VDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             SSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCceEEEEeCCCCCEEEEEcC
Confidence            6789999998 88876655543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.37  E-value=1.1e-09  Score=117.86  Aligned_cols=220  Identities=14%  Similarity=0.098  Sum_probs=150.5

Q ss_pred             CeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003842          514 KVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT  592 (792)
Q Consensus       514 ~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~  592 (792)
                      -..+++|++++. ++++...++.|.+||.++++... +. ....|.+++|+++++++++. .++ |.+||..++ .. ..
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~~g-~~-~~  123 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DDG-LFLRDTATG-VL-TL  123 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TTE-EEEEETTTC-CE-EE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CCC-EEEEECCCC-cE-EE
Confidence            357889999754 55666678899999998876432 32 34679999999999876654 444 999998763 32 22


Q ss_pred             eccc-----CCCeEEEEEcCCCCeEEEEEeC-----CCcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEc-CC
Q 003842          593 FMGH-----SASVMSLDFHPNKDDLICSCDG-----DGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-EN  659 (792)
Q Consensus       593 ~~~h-----~~~V~sl~fspd~~~ll~sgs~-----Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~-dg  659 (792)
                      +...     ...+.++++++++..++.+.+.     .+.|+.++  +++......  .....++|+++++.++++.. ++
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~  201 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVN  201 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred             EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence            2211     2358899999998744433221     24566666  455443322  34567899999988766654 68


Q ss_pred             eEEEEECC--CC-e-----EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEE
Q 003842          660 VVSILDAE--TQ-A-----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV  730 (792)
Q Consensus       660 ~I~i~D~~--t~-~-----~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~  730 (792)
                      .|.+||+.  ++ .     ....+......+..++++++|+++++...+ .|.+||. ++   +.+..+......+.+++
T Consensus       202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g---~~~~~i~~~~~~~~~~a  277 (326)
T 2ghs_A          202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPA  277 (326)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEE
T ss_pred             EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC---CEEEEEECCCCCcEEEE
Confidence            99999985  55 2     233333344567889999999988777655 8999997 33   45556666666799999


Q ss_pred             Ee-CCCCEEEEEEcCC
Q 003842          731 FH-PTYPSLLVIGCYQ  745 (792)
Q Consensus       731 fs-pdg~~L~sgs~dg  745 (792)
                      |. ++++.|++++..+
T Consensus       278 f~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          278 FIGPDASRLLVTSARE  293 (326)
T ss_dssp             EESTTSCEEEEEEBCT
T ss_pred             EecCCCCEEEEEecCC
Confidence            98 8988887766543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.35  E-value=9.5e-10  Score=118.52  Aligned_cols=219  Identities=9%  Similarity=0.041  Sum_probs=146.9

Q ss_pred             CEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE
Q 003842          556 LITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR  634 (792)
Q Consensus       556 ~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~  634 (792)
                      ...+++|++++. ++++...++.|.+||..+ +. +..+. ....|.+++|.+++. +++++ . ..|++||..+++...
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~-~~-~~~~~-~~~~v~~i~~~~dg~-l~v~~-~-~gl~~~d~~~g~~~~  123 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLAS-GR-KTVHA-LPFMGSALAKISDSK-QLIAS-D-DGLFLRDTATGVLTL  123 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTT-TE-EEEEE-CSSCEEEEEEEETTE-EEEEE-T-TEEEEEETTTCCEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCC-Cc-EEEEE-CCCcceEEEEeCCCe-EEEEE-C-CCEEEEECCCCcEEE
Confidence            356788999754 566666788999999986 32 23332 356799999999976 44333 3 459999998887654


Q ss_pred             EeeC-------CeeEEEEecCCCEEEEEEc------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC-C
Q 003842          635 VFKG-------GTAQMRFQPHLGRYLAAAA------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-D  700 (792)
Q Consensus       635 ~~~~-------~~~~v~~sp~~~~lla~s~------dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~-d  700 (792)
                      ....       ....+++++++..+++...      .+.|+.+|  +++.... ..+......++|++++++|+.+.. +
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~-~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL-FADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE-EEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe-eCCCcccCCeEEcCCCCEEEEEECCC
Confidence            3321       2456889999876554432      25677777  4544332 223345678999999997766543 4


Q ss_pred             -eEEEEECC--CC-CC--cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 003842          701 -SVRVWTVG--SG-SE--GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS  773 (792)
Q Consensus       701 -~I~IwDl~--s~-~~--~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fs  773 (792)
                       .|.+||+.  ++ ..  ...+..+.........+++.++|.++++...++.|.+||.. ++.+ .+..+...+++++|+
T Consensus       201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEE
T ss_pred             CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEEe
Confidence             89999986  43 21  12233333334567889999999877666667899999984 5544 555566679999998


Q ss_pred             -CCCCEEEEEeC
Q 003842          774 -TETGYVASASH  784 (792)
Q Consensus       774 -pdg~~LaSgs~  784 (792)
                       ++++.|+.++.
T Consensus       280 g~d~~~L~vt~~  291 (326)
T 2ghs_A          280 GPDASRLLVTSA  291 (326)
T ss_dssp             STTSCEEEEEEB
T ss_pred             cCCCCEEEEEec
Confidence             88887655543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.34  E-value=1.9e-10  Score=122.59  Aligned_cols=234  Identities=8%  Similarity=0.045  Sum_probs=156.5

Q ss_pred             eeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEE
Q 003842          546 SKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY  624 (792)
Q Consensus       546 ~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~i  624 (792)
                      .+..+..........+|+++++ ++++...++.|..|+..  +. +..+..+...+.++++.+++. ++++...++.|.+
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~--g~-~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~  111 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED--GT-VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITR  111 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT--SC-EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEE
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC--CC-EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEE
Confidence            3444555556678899999998 56677778899999984  22 455555677899999999986 5545555678999


Q ss_pred             EEcCCCeeEEEee-------CCeeEEEEecCCCEEEE----EEc-------------CCeEEEEECCCCeEEEEecCCCC
Q 003842          625 WSINNGSCTRVFK-------GGTAQMRFQPHLGRYLA----AAA-------------ENVVSILDAETQACRLSLQGHTK  680 (792)
Q Consensus       625 wdl~~~~~~~~~~-------~~~~~v~~sp~~~~lla----~s~-------------dg~I~i~D~~t~~~~~~l~~h~~  680 (792)
                      |+.. ++......       .....+++.+++..+++    +..             .+.|+.||..+++.....  ...
T Consensus       112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~  188 (305)
T 3dr2_A          112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD  188 (305)
T ss_dssp             ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred             ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence            9986 55332211       12456899998876664    221             257888888766544333  334


Q ss_pred             CeEEEEEcCCCCEEEEEeC-------CeEEEEECCCCCCcceEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003842          681 PIDSVCWDPSGELLASVSE-------DSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM  752 (792)
Q Consensus       681 ~V~sv~~spdg~~Las~s~-------d~I~IwDl~s~~~~~~i~~~-~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl  752 (792)
                      ....++|+|+++.|+.+..       ..|++|++.... ......+ .........+++.++|+ |++++. +.|.+||.
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~~~  265 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVFDS  265 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEECT
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEECC
Confidence            5678999999997766544       379999986542 1111111 11233456789999998 555554 45999998


Q ss_pred             CCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003842          753 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL  790 (792)
Q Consensus       753 ~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I  790 (792)
                      .......+..+. .+.+++|+++++.|+.++.++..++
T Consensus       266 ~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          266 DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            544333444444 5899999999998888887765554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.33  E-value=5.4e-10  Score=118.99  Aligned_cols=232  Identities=13%  Similarity=0.133  Sum_probs=158.6

Q ss_pred             eeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003842          507 SVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      .+..+.......+|+++|+ +++++..++.|..|+. +++ ...+..+...+..++|+++|+++++...++.|.+|+.+ 
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-  115 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-  115 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence            3444555678899999998 5667777899999998 444 45556677789999999999877666666889999986 


Q ss_pred             CCceeEEecc-----cCCCeEEEEEcCCCCeEEEE----EeC-------------CCcEEEEEcCCCeeEEEe-eCCeeE
Q 003842          586 PGYSLRTFMG-----HSASVMSLDFHPNKDDLICS----CDG-------------DGEIRYWSINNGSCTRVF-KGGTAQ  642 (792)
Q Consensus       586 ~~~~i~~~~~-----h~~~V~sl~fspd~~~ll~s----gs~-------------Dg~I~iwdl~~~~~~~~~-~~~~~~  642 (792)
                       +.. ..+..     ....+.++++.++|. ++++    |..             .+.|+.||..+++..... ......
T Consensus       116 -g~~-~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~g  192 (305)
T 3dr2_A          116 -GQA-HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNG  192 (305)
T ss_dssp             -SCE-EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEE
T ss_pred             -CCE-EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcc
Confidence             222 22211     123467899999986 4444    221             256888887666654332 233466


Q ss_pred             EEEecCCCEEEEEEcC------CeEEEEECCCCeEE--EEe-cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCc
Q 003842          643 MRFQPHLGRYLAAAAE------NVVSILDAETQACR--LSL-QGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG  713 (792)
Q Consensus       643 v~~sp~~~~lla~s~d------g~I~i~D~~t~~~~--~~l-~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~  713 (792)
                      ++|+++++.++++...      +.|.+||+......  ..+ .........++++++|+++++. .+.|.+|+.. +   
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~-g---  267 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD-G---  267 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECTT-S---
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECCC-C---
Confidence            8999999988887765      78999998765311  111 1123445678999999955544 5589999974 3   


Q ss_pred             ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003842          714 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN  751 (792)
Q Consensus       714 ~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwD  751 (792)
                      +.+..+.... .+.+++|.++++.|++++.+ .|+.++
T Consensus       268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~-~l~~~~  303 (305)
T 3dr2_A          268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGP-CLWMLP  303 (305)
T ss_dssp             CEEEEEECSS-CCCEEEECTTSCEEEEEETT-EEEEEE
T ss_pred             CEEEEEECCC-ceeEEEEeCCCCEEEEEcCC-eEEEEE
Confidence            4455555444 58889999999989888875 444444

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.32  E-value=3.1e-11  Score=132.29  Aligned_cols=245  Identities=9%  Similarity=-0.007  Sum_probs=163.0

Q ss_pred             eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe----------CCCcEEEEeCCCCCceeEEeccc-------C
Q 003842          535 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNPGYSLRTFMGH-------S  597 (792)
Q Consensus       535 ~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----------~Dg~V~IWdl~s~~~~i~~~~~h-------~  597 (792)
                      .|.++|.++++.+.++.....+  .+.|+||+++|+++.          .++.|.+||+.+ .+.+.++...       .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEECCCccccccC
Confidence            8889999999999999866666  799999999998886          368899999998 6667766533       1


Q ss_pred             CCeEEEEEcCCCCeEEEEEeC-CCcEEE--EEcCCCeeEEEeeCCeeEEEEecCCC-EEEEEEcCCeEEEEECCC-----
Q 003842          598 ASVMSLDFHPNKDDLICSCDG-DGEIRY--WSINNGSCTRVFKGGTAQMRFQPHLG-RYLAAAAENVVSILDAET-----  668 (792)
Q Consensus       598 ~~V~sl~fspd~~~ll~sgs~-Dg~I~i--wdl~~~~~~~~~~~~~~~v~~sp~~~-~lla~s~dg~I~i~D~~t-----  668 (792)
                      .....+.|+||+++++++... +..|.+  +|+.+   +..+..+. ++.+.|+++ .+++.+.|+.+.+.|+++     
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~  199 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-CFHIHPGAAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-CCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-ceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence            235689999999988766544 467888  99877   44443211 122334443 445566788888899887     


Q ss_pred             CeEEEE----ecCCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeecC-------C---CceEEEEEeC
Q 003842          669 QACRLS----LQGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN-------G---NKFHSCVFHP  733 (792)
Q Consensus       669 ~~~~~~----l~~h~~~V~sv~~spdg~-~Las~s~d~I~IwDl~s~~~~~~i~~~~~~-------~---~~i~si~fsp  733 (792)
                      ++....    +.....+.   . .+++. ++++.. +.|.+.|+..... ..+..+...       .   .....++|++
T Consensus       200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~  273 (368)
T 1mda_H          200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKLK  273 (368)
T ss_dssp             EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred             CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEEcC
Confidence            443211    11122333   3 45444 444444 8888899864311 222222111       0   1112268999


Q ss_pred             CCCEEEEEEc-C--------CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-CCCcEEEeC
Q 003842          734 TYPSLLVIGC-Y--------QSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK  792 (792)
Q Consensus       734 dg~~L~sgs~-d--------g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~-~LaSgs-~DG~I~IWd  792 (792)
                      ++++++++.. .        +.+.+||+.+++.+....-.....+|+|++|++ +++++. .++.|.+||
T Consensus       274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID  343 (368)
T 1mda_H          274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence            9999988654 2        367799999999884333333688999999998 566666 589999986

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.31  E-value=8.8e-10  Score=120.67  Aligned_cols=253  Identities=12%  Similarity=0.039  Sum_probs=165.2

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCe--
Q 003842          523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--  600 (792)
Q Consensus       523 dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V--  600 (792)
                      ++..|++++.++.|+.+|.++++.+..+............  .+..+++++.++.|..+|..+ ++.+..+.......  
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~t-G~~~W~~~~~~~~~~~  178 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEAD-GAVKWTVNLDMPSLSL  178 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTT-CCEEEEEECCC-----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCC-CcEEEEEeCCCCceee
Confidence            4557888889999999999999988776644322212222  245888889999999999987 55554443222111  


Q ss_pred             ---EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeE----------E--EEecCCCEEEEEEcCCeEEEEE
Q 003842          601 ---MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ----------M--RFQPHLGRYLAAAAENVVSILD  665 (792)
Q Consensus       601 ---~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~----------v--~~sp~~~~lla~s~dg~I~i~D  665 (792)
                         ....+.  +. .++.+..++.|..+|..+++.+..+......          +  .....++.+++++.++.|..+|
T Consensus       179 ~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d  255 (376)
T 3q7m_A          179 RGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD  255 (376)
T ss_dssp             CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred             cCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence               122222  23 4557788999999999999988766532100          0  0111357888888899999999


Q ss_pred             CCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEc
Q 003842          666 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGC  743 (792)
Q Consensus       666 ~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~  743 (792)
                      .++++.+.....  .....+..  ++..|+.++.+ .|..||..++   +.+..... ....+....+  .+..|++++.
T Consensus       256 ~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~  326 (376)
T 3q7m_A          256 LRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGG---VTLWTQSDLLHRLLTSPVL--YNGNLVVGDS  326 (376)
T ss_dssp             TTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTC---CEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred             CCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCC---cEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence            999998877653  23444444  35566666666 9999999887   44444431 1222223333  3567999999


Q ss_pred             CCeEEEEECCCCcEEE-EcccCCCeEE-EEEeCCCCEEEEEeCCCcEEEeC
Q 003842          744 YQSLELWNMSENKTMT-LTAHEGLIAA-LAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       744 dg~I~IwDl~~~~~~~-~~~h~~~V~s-l~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +|.|++||..+++.+. .......+.+ ....  +..|+.++.||.|+.||
T Consensus       327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence            9999999999999873 3332333322 2222  45778889999999885

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.29  E-value=2.5e-14  Score=157.66  Aligned_cols=223  Identities=12%  Similarity=0.024  Sum_probs=121.2

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCC-CeE
Q 003842          523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA-SVM  601 (792)
Q Consensus       523 dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~-~V~  601 (792)
                      ++.+|++++.||.|+.||..+|+.+..+..  ..+.+..+..++..+++++.||.|+.||..+ ++.+..+..+.. .+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC-CceeeeeeccCccccc
Confidence            567999999999999999999999988876  4555666667787888889999999999987 444444432211 110


Q ss_pred             -EEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCC
Q 003842          602 -SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK  680 (792)
Q Consensus       602 -sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~  680 (792)
                       +..+. .+ ..+++++.|+.|+.||.++|+.+..+..+. ...++|+++.+++++.++.|+.||.++++.+..+..+. 
T Consensus        85 ~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-  160 (369)
T 2hz6_A           85 ASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF-ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-  160 (369)
T ss_dssp             TCSCC-------CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred             cCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCCC-cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence             01111 22 245577889999999999999887765432 34566788889999999999999999998765554211 


Q ss_pred             CeEEEEEcCCC---CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE--EEcCCeEEEEECCC
Q 003842          681 PIDSVCWDPSG---ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV--IGCYQSLELWNMSE  754 (792)
Q Consensus       681 ~V~sv~~spdg---~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s--gs~dg~I~IwDl~~  754 (792)
                       ....+++.+.   ..+++++.+ .|+.||..++   +.+..+......+...+++.++...+.  ...++.++++|..+
T Consensus       161 -~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~t  236 (369)
T 2hz6_A          161 -YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMS  236 (369)
T ss_dssp             -ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHH
T ss_pred             -ccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEecCCCceEEEEEecCCceEeccceeecccceeeeehhc
Confidence             1222333331   345556666 9999999887   455554433333333445556543210  01133455566554


Q ss_pred             Cc
Q 003842          755 NK  756 (792)
Q Consensus       755 ~~  756 (792)
                      ++
T Consensus       237 G~  238 (369)
T 2hz6_A          237 GE  238 (369)
T ss_dssp             HH
T ss_pred             CC
Confidence            44

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.26  E-value=7.9e-10  Score=131.29  Aligned_cols=261  Identities=13%  Similarity=0.128  Sum_probs=178.9

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccCCCC-----------EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-----------ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT  592 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~-----------V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~  592 (792)
                      +..|++++.++.|+.+|..+|+.+-++......           ...+++  ++..|++++.|+.|+.+|..+ ++.+..
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~t-G~~~W~  153 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAAT-GKEVWH  153 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTT-CCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCC-CCEEee
Confidence            457777888899999999999998877643210           112233  456888999999999999998 555555


Q ss_pred             eccc-C----CCeEE-EEEcCCCCeEEEEEe-----CCCcEEEEEcCCCeeEEEeeCCe---------------------
Q 003842          593 FMGH-S----ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGGT---------------------  640 (792)
Q Consensus       593 ~~~h-~----~~V~s-l~fspd~~~ll~sgs-----~Dg~I~iwdl~~~~~~~~~~~~~---------------------  640 (792)
                      +..+ .    ..+.+ ..+.  +..+++.++     .++.|+.||.++++.+..+....                     
T Consensus       154 ~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~  231 (677)
T 1kb0_A          154 QNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP  231 (677)
T ss_dssp             EETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred             ecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence            5433 1    11211 1111  234443332     27999999999999887764311                     


Q ss_pred             --------------eEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEecC--CC------
Q 003842          641 --------------AQMRFQPHLGRYLAAAAEN-------------------VVSILDAETQACRLSLQG--HT------  679 (792)
Q Consensus       641 --------------~~v~~sp~~~~lla~s~dg-------------------~I~i~D~~t~~~~~~l~~--h~------  679 (792)
                                    ..+.++++++.++++..++                   .|..+|.++++.+..+..  |.      
T Consensus       232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~  311 (677)
T 1kb0_A          232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS  311 (677)
T ss_dssp             GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred             cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence                          2367888989988887664                   599999999999887764  32      


Q ss_pred             -CCeEEEEEcCCC---CEEEEEeCC-eEEEEECCCCCCcceEEEeecC-----------CCce-----------------
Q 003842          680 -KPIDSVCWDPSG---ELLASVSED-SVRVWTVGSGSEGECVHELSCN-----------GNKF-----------------  726 (792)
Q Consensus       680 -~~V~sv~~spdg---~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~-----------~~~i-----------------  726 (792)
                       .....+....+|   .+|+.++.+ .|+++|..+++   .+..+...           ...+                 
T Consensus       312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~  388 (677)
T 1kb0_A          312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK---FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG  388 (677)
T ss_dssp             CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred             CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC---EeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence             112223333467   577888877 99999998884   33332211           0111                 


Q ss_pred             -------EEEEEeCCCCEEEEEEcC-------------------------------------------CeEEEEECCCCc
Q 003842          727 -------HSCVFHPTYPSLLVIGCY-------------------------------------------QSLELWNMSENK  756 (792)
Q Consensus       727 -------~si~fspdg~~L~sgs~d-------------------------------------------g~I~IwDl~~~~  756 (792)
                             ..++|+|+...+++...+                                           +.|..||+.+++
T Consensus       389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~  468 (677)
T 1kb0_A          389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK  468 (677)
T ss_dssp             TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred             cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence                   256889998888876432                                           689999999999


Q ss_pred             EEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          757 TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       757 ~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .+....+...+.+..+..++.++++++.||.|++||
T Consensus       469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence            885555555666666777888999999999999986

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.25  E-value=5.3e-10  Score=133.04  Aligned_cols=263  Identities=11%  Similarity=0.105  Sum_probs=173.8

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccCCCC----------E-EEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----------I-TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT  592 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~----------V-~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~  592 (792)
                      +..|++++.++.|+.+|..+|+.+-.+......          + ..+.+  ++..|++++.|+.|+.||..+ ++.+..
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~T-G~~~W~  146 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKT-GQRAWS  146 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT-CCEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCC-CCEeee
Confidence            557788888999999999999998887643221          0 11222  356888999999999999998 555544


Q ss_pred             eccc--CCCeEEEEEcC--CCCeEEEEEe-----CCCcEEEEEcCCCeeEEEeeCC------------------------
Q 003842          593 FMGH--SASVMSLDFHP--NKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGG------------------------  639 (792)
Q Consensus       593 ~~~h--~~~V~sl~fsp--d~~~ll~sgs-----~Dg~I~iwdl~~~~~~~~~~~~------------------------  639 (792)
                      +...  ......+...|  .+..+++.++     .+|.|+.||.++++.+..+...                        
T Consensus       147 ~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  226 (689)
T 1yiq_A          147 VDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA  226 (689)
T ss_dssp             EECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred             ecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence            4321  11111111111  1233443322     3789999999999988776421                        


Q ss_pred             ----------eeEEEEecCCCEEEEEEcCCe-------------------EEEEECCCCeEEEEecC--CC-------CC
Q 003842          640 ----------TAQMRFQPHLGRYLAAAAENV-------------------VSILDAETQACRLSLQG--HT-------KP  681 (792)
Q Consensus       640 ----------~~~v~~sp~~~~lla~s~dg~-------------------I~i~D~~t~~~~~~l~~--h~-------~~  681 (792)
                                -..+.+.++.+.++++..++.                   |..||.++++.+..+..  |.       ..
T Consensus       227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~  306 (689)
T 1yiq_A          227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH  306 (689)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence                      014678888899998887763                   99999999999988764  32       12


Q ss_pred             eEEEEEcCCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeecCC----------------------------------
Q 003842          682 IDSVCWDPSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG----------------------------------  723 (792)
Q Consensus       682 V~sv~~spdg~---~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~----------------------------------  723 (792)
                      +.......+|+   +|+.++.+ .++++|.++++.   +.......                                  
T Consensus       307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p  383 (689)
T 1yiq_A          307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL---LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTP  383 (689)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESS
T ss_pred             cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE---eccccccccccccccCccCCCcccchhhccccCCCCeeEeCC
Confidence            22222223565   67777777 999999988843   21111000                                  


Q ss_pred             -----CceEEEEEeCCCCEEEEEEc---------------------------------------------CCeEEEEECC
Q 003842          724 -----NKFHSCVFHPTYPSLLVIGC---------------------------------------------YQSLELWNMS  753 (792)
Q Consensus       724 -----~~i~si~fspdg~~L~sgs~---------------------------------------------dg~I~IwDl~  753 (792)
                           .....++|+|+...|++...                                             +|.|+.||+.
T Consensus       384 ~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~  463 (689)
T 1yiq_A          384 AFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV  463 (689)
T ss_dssp             CTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT
T ss_pred             CcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC
Confidence                 01123688998888877632                                             3679999999


Q ss_pred             CCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          754 ENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       754 ~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +++.+....+...+....+...+.+|++++.||.|+.||
T Consensus       464 tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D  502 (689)
T 1yiq_A          464 KQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYA  502 (689)
T ss_dssp             TTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             CCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEE
Confidence            999884444444444446667788999999999999986

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.24  E-value=3.5e-09  Score=116.44  Aligned_cols=179  Identities=9%  Similarity=0.050  Sum_probs=131.7

Q ss_pred             CcceEEEEeCCCeeeecCCC--eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          429 SKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       429 ~k~~l~~s~Dg~~~~ss~s~--~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...++.++++...+++++.+  .+|++++..-  .+..  ..+                             .  +....
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~--~~~~--~~~-----------------------------~--~~~~~   83 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRD--HITS--DST-----------------------------P--LTFKW   83 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHH--HHHS--SSC-----------------------------C--CCCSE
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhh--hhcc--ccc-----------------------------c--ccceE
Confidence            35689999999988887766  6687654431  1110  000                             0  11111


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                       ...+.+ |++++|  |+++|+++ .++.|++||+.+......+..|...|.++.+.+..  |++++.||.|.+||+.+.
T Consensus        84 -~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~  156 (388)
T 1xip_A           84 -EKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTK  156 (388)
T ss_dssp             -EEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTC
T ss_pred             -EeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCC
Confidence             123556 999999  99999999 88999999999887777777888889999888653  888999999999999863


Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee--EEEe------------eCCeeEEEEecCCCEE
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--TRVF------------KGGTAQMRFQPHLGRY  652 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~--~~~~------------~~~~~~v~~sp~~~~l  652 (792)
                      . ...    +...|+|++|+|+|   ++.|..||.|++|+...+.+  .+.+            ...+..+.|.+++.++
T Consensus       157 ~-~~~----~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~fl  228 (388)
T 1xip_A          157 S-TKQ----LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFL  228 (388)
T ss_dssp             C-EEE----EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEE
T ss_pred             c-ccc----ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEE
Confidence            3 322    45689999999998   45788899999999988886  5455            2346779999987777


Q ss_pred             EEEEc
Q 003842          653 LAAAA  657 (792)
Q Consensus       653 la~s~  657 (792)
                      ++-..
T Consensus       229 v~y~~  233 (388)
T 1xip_A          229 AVFGN  233 (388)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            66443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.24  E-value=1.3e-09  Score=119.32  Aligned_cols=255  Identities=9%  Similarity=0.086  Sum_probs=162.9

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccC---------CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEH---------SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM  594 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h---------~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~  594 (792)
                      +..|++++.++.|+.||.++++.+..+...         ...+.+.. ..++..|++++.++.|+.+|..+ ++.+..+.
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~  130 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSD-GTVAWQTK  130 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTT-CCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCC-CCEEEEEe
Confidence            557888888999999999999988766542         22232221 12456888899999999999988 45444444


Q ss_pred             ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEE------EEecCCCEEEEEEcCCeEEEEECCC
Q 003842          595 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM------RFQPHLGRYLAAAAENVVSILDAET  668 (792)
Q Consensus       595 ~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v------~~sp~~~~lla~s~dg~I~i~D~~t  668 (792)
                      ..........+. + . .++.++.++.|..+|..+++.+..+.......      .....++.+++++.++.|..+|.++
T Consensus       131 ~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~t  207 (376)
T 3q7m_A          131 VAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQ  207 (376)
T ss_dssp             CSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTT
T ss_pred             CCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCC
Confidence            332222222222 2 3 45578889999999999999887765432111      1111256788888899999999999


Q ss_pred             CeEEEEecCCCCC----eE---EEEEcC--CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003842          669 QACRLSLQGHTKP----ID---SVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL  738 (792)
Q Consensus       669 ~~~~~~l~~h~~~----V~---sv~~sp--dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L  738 (792)
                      ++.+..+......    +.   .+...|  .+..++.++.+ .|..+|..++   +.+.....  .....+..  ++..|
T Consensus       208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG---~~~w~~~~--~~~~~~~~--~~~~l  280 (376)
T 3q7m_A          208 GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG---QIMWKREL--GSVNDFIV--DGNRI  280 (376)
T ss_dssp             CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC---CEEEEECC--CCEEEEEE--ETTEE
T ss_pred             CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC---cEEeeccC--CCCCCceE--ECCEE
Confidence            9988776532110    00   000111  24556666666 9999999887   34443332  23334443  46678


Q ss_pred             EEEEcCCeEEEEECCCCcEEEEcc--cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          739 LVIGCYQSLELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       739 ~sgs~dg~I~IwDl~~~~~~~~~~--h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ++++.++.|..||..+++.+....  ....+....+.  +..|+.++.+|.|++||
T Consensus       281 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d  334 (376)
T 3q7m_A          281 YLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN  334 (376)
T ss_dssp             EEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence            999999999999999998873322  22233333332  45777888888888775

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.21  E-value=2.9e-08  Score=103.19  Aligned_cols=245  Identities=9%  Similarity=0.010  Sum_probs=158.6

Q ss_pred             CEEEEEeCCCeEEEEECCCCcee-----EEeccCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCCCceeEEecccCC
Q 003842          525 KLLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSA  598 (792)
Q Consensus       525 ~~Lasgs~Dg~I~vWdl~t~~~~-----~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~V~IWdl~s~~~~i~~~~~h~~  598 (792)
                      .+|+.+.. +.|+.++++.....     ..+......+..++|++++..|+.+ ..++.|.+++++. ......+.....
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~   79 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTIIRQDLG   79 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEECTTCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCC-CCcEEEEECCCC
Confidence            35555543 47888888754321     1222223457899999976655554 4578899999975 333233322335


Q ss_pred             CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEE
Q 003842          599 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACR  672 (792)
Q Consensus       599 ~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~d---g~I~i~D~~t~~~~  672 (792)
                      ....|++.+++..++++....+.|.++++..........   .....+++++++++++++...   +.|..++.......
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~  159 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR  159 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence            688999999877788777778899999987543322222   345678999988888777653   68888887654322


Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEE
Q 003842          673 LSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLEL  749 (792)
Q Consensus       673 ~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-dg~I~I  749 (792)
                      ............+++++++.+|+.+...  .|.++|+...   .....+. .......+++.  +..|+++.. .+.|.+
T Consensus       160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~  233 (267)
T 1npe_A          160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA  233 (267)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred             EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEE
Confidence            2222233457889999988777666554  8999998643   1122222 23344566654  566776665 479999


Q ss_pred             EECCCCcEEE-EcccC-CCeEEEEEeCCCC
Q 003842          750 WNMSENKTMT-LTAHE-GLIAALAVSTETG  777 (792)
Q Consensus       750 wDl~~~~~~~-~~~h~-~~V~sl~fspdg~  777 (792)
                      +|..+++.+. +.... ....++++.|++.
T Consensus       234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          234 MDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EeCCCCCceEEEccccccccceeeecCccC
Confidence            9999988773 33222 2477888888764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.20  E-value=5.6e-10  Score=119.10  Aligned_cols=259  Identities=11%  Similarity=0.045  Sum_probs=168.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003842          511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL  590 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i  590 (792)
                      +...+.++.+..+|. |++++.+  |..||. +++.+..+......+....+.  +..|++++.++.|..||..  +...
T Consensus        58 ~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~--g~~~  129 (330)
T 3hxj_A           58 GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD--GTEK  129 (330)
T ss_dssp             GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT--SCEE
T ss_pred             CCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC--CCEE
Confidence            344567778877775 4445444  888886 565554444333323333333  5578888889999999987  3444


Q ss_pred             EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003842          591 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAE  667 (792)
Q Consensus       591 ~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I~i~D~~  667 (792)
                      ..+......+.++.+.+++.  ++.++.++.|..||.. ++.+..+..   .+..+.+..++ .+++++  +.|..|| .
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-~l~v~t--~~l~~~d-~  202 (330)
T 3hxj_A          130 WRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-TIYFGS--DKVYAIN-P  202 (330)
T ss_dssp             EEEECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-CEEEES--SSEEEEC-T
T ss_pred             EEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-EEEEEe--CEEEEEC-C
Confidence            44444555566777776654  4467778999999998 776665542   23344554554 455555  8899999 7


Q ss_pred             CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003842          668 TQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL  747 (792)
Q Consensus       668 t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I  747 (792)
                      +++.+..+......+.+++++++|.+++....+.|..+|. ++   ..+..+......+..+.+.+++ .|++++.++.|
T Consensus       203 ~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl  277 (330)
T 3hxj_A          203 DGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHL  277 (330)
T ss_dssp             TSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEE
T ss_pred             CCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CEeEEeeCCCCccccceEcCCC-eEEEecCCCCE
Confidence            7777777776667788899988887666554458888874 33   3444444433334445555555 57788888899


Q ss_pred             EEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          748 ELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       748 ~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ..||. +++.+ .+......+.++....++.+ ..++.+|.|++.
T Consensus       278 ~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~~  320 (330)
T 3hxj_A          278 YAINP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNGKFYAL  320 (330)
T ss_dssp             EEECT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTSCEEEE
T ss_pred             EEECC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCCeEEEE
Confidence            99996 55554 44445566778888788765 457889998874

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.19  E-value=8.2e-09  Score=114.11  Aligned_cols=217  Identities=10%  Similarity=-0.001  Sum_probs=147.9

Q ss_pred             CCCCeEEE-EeCCCcEEEEeCCCCC---ceeEEec------c-cCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEE
Q 003842          564 PSMPRLAT-SSFDKTVRVWDADNPG---YSLRTFM------G-HSASVMSLDFHPNKDDLICSCDGD------GEIRYWS  626 (792)
Q Consensus       564 pdg~~Las-gs~Dg~V~IWdl~s~~---~~i~~~~------~-h~~~V~sl~fspd~~~ll~sgs~D------g~I~iwd  626 (792)
                      .++++|++ +-.+++|+|+|+.+..   +.++++.      . ....-..+...|++  +++++..+      |.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence            77777655 5567889999997532   3444442      1 11234567788998  55565555      7899999


Q ss_pred             cCCCeeEEEeeCC------eeEEEEecCCCEEEEEE-------------------cCCeEEEEECCCCeEEEEecCCC--
Q 003842          627 INNGSCTRVFKGG------TAQMRFQPHLGRYLAAA-------------------AENVVSILDAETQACRLSLQGHT--  679 (792)
Q Consensus       627 l~~~~~~~~~~~~------~~~v~~sp~~~~lla~s-------------------~dg~I~i~D~~t~~~~~~l~~h~--  679 (792)
                      .++++.+..+...      ...+.|+|+++.+++..                   .+..|.+||+.+++.+.++....  
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            9999999888632      23478899999777774                   36899999999998888776531  


Q ss_pred             CCeEEEEE--cCCCCEEEEEeC-----C--eEEEEECCCCCCcceEEEe--ec----------------CCCceEEEEEe
Q 003842          680 KPIDSVCW--DPSGELLASVSE-----D--SVRVWTVGSGSEGECVHEL--SC----------------NGNKFHSCVFH  732 (792)
Q Consensus       680 ~~V~sv~~--spdg~~Las~s~-----d--~I~IwDl~s~~~~~~i~~~--~~----------------~~~~i~si~fs  732 (792)
                      .....|.|  +|++++++++++     .  +|.+|....+ .......+  ..                .......|.++
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence            23445555  999998887775     3  7777666542 22222221  11                02457789999


Q ss_pred             CCCCEEEEEEcC-CeEEEEECCCC---cEEEEcccC---------------CCeEEEEEeCCCCEEEEEe
Q 003842          733 PTYPSLLVIGCY-QSLELWNMSEN---KTMTLTAHE---------------GLIAALAVSTETGYVASAS  783 (792)
Q Consensus       733 pdg~~L~sgs~d-g~I~IwDl~~~---~~~~~~~h~---------------~~V~sl~fspdg~~LaSgs  783 (792)
                      +|+++|+++... +.|.+||+...   +.+....-.               +....+++++||++|+++.
T Consensus       330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999999998874 69999998632   333211111               1357899999999999887

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.18  E-value=1.2e-09  Score=130.22  Aligned_cols=232  Identities=12%  Similarity=0.110  Sum_probs=153.0

Q ss_pred             CCCCEEEEEECCCCCeEEEEe-----CCCcEEEEeCCCCCceeE-EecccCCCeEEEEEcCCCCeEEEEEeCC-------
Q 003842          553 HSSLITDVRFSPSMPRLATSS-----FDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD-------  619 (792)
Q Consensus       553 h~~~V~~i~fspdg~~Lasgs-----~Dg~V~IWdl~s~~~~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~D-------  619 (792)
                      |...+..++|+|||++||.+.     .+..|+|||+.++ ..+. .+...  ....++|+ |++.++++...+       
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg-~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESK-QPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTC-SEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCC-CCCccccCCc--eeccEEEe-CCCEEEEEEecCccccccc
Confidence            556788999999999888543     2357999999984 4333 22211  13568899 988877665432       


Q ss_pred             -----CcEEEEEcCCCee--EEEee--C----CeeEEEEecCCCEEEEEEc----CCeEEEEECCCCe-EEEEecCCCCC
Q 003842          620 -----GEIRYWSINNGSC--TRVFK--G----GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQA-CRLSLQGHTKP  681 (792)
Q Consensus       620 -----g~I~iwdl~~~~~--~~~~~--~----~~~~v~~sp~~~~lla~s~----dg~I~i~D~~t~~-~~~~l~~h~~~  681 (792)
                           ..|++|++.+...  ...+.  .    ....+.|++++.++++...    ++.|+++|+.++. ....+..+...
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence                 2499999987642  22332  2    2356889999998876654    2589999998763 34445555555


Q ss_pred             eEEEEEcCCCCEEEEEe-CC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECC
Q 003842          682 IDSVCWDPSGELLASVS-ED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMS  753 (792)
Q Consensus       682 V~sv~~spdg~~Las~s-~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---~I~IwDl~  753 (792)
                      +... |+++|..|+..+ .+    .|.+||+.++... ....+..+...+.  .|++++++|++...++   .|++||+.
T Consensus       283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence            5555 667676555444 22    6899999876331 1233444544554  8999999888776654   79999998


Q ss_pred             CCcEEEEc-ccCCCeEEEEEeCCCCEEEEEeCC----CcEEEeC
Q 003842          754 ENKTMTLT-AHEGLIAALAVSTETGYVASASHD----KFVKLWK  792 (792)
Q Consensus       754 ~~~~~~~~-~h~~~V~sl~fspdg~~LaSgs~D----G~I~IWd  792 (792)
                      ++....+. ...+.+..+.++++++.|+....+    +.|+.||
T Consensus       359 g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d  402 (693)
T 3iuj_A          359 GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE  402 (693)
T ss_dssp             SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred             CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence            76655443 345567788888888766655444    6777765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.18  E-value=7.8e-09  Score=114.29  Aligned_cols=221  Identities=10%  Similarity=0.047  Sum_probs=155.2

Q ss_pred             EEc--CCCCEEEEE-eCCCeEEEEECCCC----ceeEEec------c-CCCCEEEEEECCCCCeEEEEeCC------CcE
Q 003842          519 HFS--SDGKLLATG-GHDKKAVLWHTDTL----KSKTNLE------E-HSSLITDVRFSPSMPRLATSSFD------KTV  578 (792)
Q Consensus       519 afs--pdg~~Lasg-s~Dg~I~vWdl~t~----~~~~~l~------~-h~~~V~~i~fspdg~~Lasgs~D------g~V  578 (792)
                      .++  .++++|++. ..++.|+|+|+.+.    +..++++      . ....-..+...|+| +++++..+      |.|
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            446  788877765 46788999999755    6666663      1 11245667889999 77776555      789


Q ss_pred             EEEeCCCCCceeEEecccC---CCeEEEEEcCCCCeEEEEEe-------------------CCCcEEEEEcCCCeeEEEe
Q 003842          579 RVWDADNPGYSLRTFMGHS---ASVMSLDFHPNKDDLICSCD-------------------GDGEIRYWSINNGSCTRVF  636 (792)
Q Consensus       579 ~IWdl~s~~~~i~~~~~h~---~~V~sl~fspd~~~ll~sgs-------------------~Dg~I~iwdl~~~~~~~~~  636 (792)
                      .++|..+ .+.+.++....   ..-..+.|+|+++.++ +..                   .+..|.+||+.+++.+..+
T Consensus       167 ~vlD~~T-~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI  244 (462)
T 2ece_A          167 LMLDHYS-FEPLGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL  244 (462)
T ss_dssp             EEECTTT-CCEEEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred             EEEECCC-CeEEEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence            9999997 66777775322   2244688899988555 443                   3789999999999888877


Q ss_pred             eCC-----eeEEEE--ecCCCEEEEEEc------CCeEEEEECCCCeE--EEE--ecCC----------------CCCeE
Q 003842          637 KGG-----TAQMRF--QPHLGRYLAAAA------ENVVSILDAETQAC--RLS--LQGH----------------TKPID  683 (792)
Q Consensus       637 ~~~-----~~~v~~--sp~~~~lla~s~------dg~I~i~D~~t~~~--~~~--l~~h----------------~~~V~  683 (792)
                      ..+     ...++|  +|+++++++++.      ++.|.+|..+.++.  +..  +...                .....
T Consensus       245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa  324 (462)
T 2ece_A          245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT  324 (462)
T ss_dssp             ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred             ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence            653     233555  999999888775      45787766544421  111  1110                23467


Q ss_pred             EEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCC--------------ceEEEEEeCCCCEEEEEE
Q 003842          684 SVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGN--------------KFHSCVFHPTYPSLLVIG  742 (792)
Q Consensus       684 sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~--------------~i~si~fspdg~~L~sgs  742 (792)
                      .|.+++||++|+++..+  .|.+||+......+.+..+...+.              ....+.++|||++|+++.
T Consensus       325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            89999999999988876  999999975545566666654321              368899999999999998

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.15  E-value=3.1e-09  Score=126.19  Aligned_cols=251  Identities=11%  Similarity=0.093  Sum_probs=166.5

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeEEeccC-C----CCEEE-EEECCCCCeEEEEeC------CCcEEEEeCCCCCcee
Q 003842          523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEH-S----SLITD-VRFSPSMPRLATSSF------DKTVRVWDADNPGYSL  590 (792)
Q Consensus       523 dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h-~----~~V~~-i~fspdg~~Lasgs~------Dg~V~IWdl~s~~~~i  590 (792)
                      ++..|++++.|+.|+.+|..+|+.+..+..+ .    ..+.+ ...  .+..+++++.      +|.|+.||..+ ++.+
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~t-G~~~  203 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAET-GERK  203 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTT-CCEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCC-CcEE
Confidence            3558888899999999999999998887754 1    11211 111  2345555553      78999999998 5555


Q ss_pred             EEecccCC--------------------------------CeEEEEEcCCCCeEEEEEeCCC------------------
Q 003842          591 RTFMGHSA--------------------------------SVMSLDFHPNKDDLICSCDGDG------------------  620 (792)
Q Consensus       591 ~~~~~h~~--------------------------------~V~sl~fspd~~~ll~sgs~Dg------------------  620 (792)
                      ..+.....                                ....+++.++++.++ .+..++                  
T Consensus       204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy-~~~~~~~~w~~~~~~~~~gd~~~~  282 (677)
T 1kb0_A          204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMY-VGTGNGSPWSHKVRSPKGGDNLYL  282 (677)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHSTTCCCCTTT
T ss_pred             EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEE-EECCCCccccCCCCCccCCCCeee
Confidence            44432111                                113567888866444 555443                  


Q ss_pred             -cEEEEEcCCCeeEEEeeCC------------eeEEEEecCC---CEEEEEEcCCeEEEEECCCCeEEEEecCCCC----
Q 003842          621 -EIRYWSINNGSCTRVFKGG------------TAQMRFQPHL---GRYLAAAAENVVSILDAETQACRLSLQGHTK----  680 (792)
Q Consensus       621 -~I~iwdl~~~~~~~~~~~~------------~~~v~~sp~~---~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~----  680 (792)
                       .|..+|.++++.+..+...            ...+....++   ..+++++.+|.|+++|.++++.+..+.....    
T Consensus       283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~  362 (677)
T 1kb0_A          283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS  362 (677)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence             5999999999998876531            1112233355   5677888899999999999999877653211    


Q ss_pred             -------Ce------------------------EEEEEcCCCCEEEEEeC------------------------------
Q 003842          681 -------PI------------------------DSVCWDPSGELLASVSE------------------------------  699 (792)
Q Consensus       681 -------~V------------------------~sv~~spdg~~Las~s~------------------------------  699 (792)
                             ++                        ..++|+|++.+|++...                              
T Consensus       363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  442 (677)
T 1kb0_A          363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT  442 (677)
T ss_dssp             EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred             ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence                   01                        14688998887776432                              


Q ss_pred             --------------CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc-cc
Q 003842          700 --------------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-AH  763 (792)
Q Consensus       700 --------------d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~-~h  763 (792)
                                    +.|..||+.++   +.+..+.. ...+....+..++..+++++.++.|++||..+++++ .+. .+
T Consensus       443 g~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~  518 (677)
T 1kb0_A          443 AKFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT  518 (677)
T ss_dssp             CEEECSSCCCSCCEEEEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ccccccccCCCCCccEEEEEeCCCC---cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence                          36888999887   45554443 233445567778888999999999999999999988 333 33


Q ss_pred             CCCeEEEEEeCCCCEEEE
Q 003842          764 EGLIAALAVSTETGYVAS  781 (792)
Q Consensus       764 ~~~V~sl~fspdg~~LaS  781 (792)
                      .....-+.|..+|+.+++
T Consensus       519 ~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          519 GVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             CCCSCCEEEEETTEEEEE
T ss_pred             CcccCCEEEEeCCEEEEE
Confidence            333445666778875443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.15  E-value=6.9e-09  Score=123.43  Aligned_cols=252  Identities=11%  Similarity=0.103  Sum_probs=162.5

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccC--CCCEEEEEECC---CCCeEEEEe------CCCcEEEEeCCCCCceeEE
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSP---SMPRLATSS------FDKTVRVWDADNPGYSLRT  592 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h--~~~V~~i~fsp---dg~~Lasgs------~Dg~V~IWdl~s~~~~i~~  592 (792)
                      +..|++++.|+.|+.||.++|+.+-.+...  ......+..+|   ++ .+++++      .+|.|+.||..+ ++.+..
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~  198 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAET-GKEAWR  198 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTT-CCEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCC-CcEEEE
Confidence            457888999999999999999988776542  11111111222   44 445543      378999999998 554444


Q ss_pred             eccc-------------------------------CCCeEEEEEcCCCCeEEEEEeCCC-------------------cE
Q 003842          593 FMGH-------------------------------SASVMSLDFHPNKDDLICSCDGDG-------------------EI  622 (792)
Q Consensus       593 ~~~h-------------------------------~~~V~sl~fspd~~~ll~sgs~Dg-------------------~I  622 (792)
                      +...                               ......+++.++++ +++.+..++                   .|
T Consensus       199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v  277 (689)
T 1yiq_A          199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSI  277 (689)
T ss_dssp             EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred             ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence            3310                               01112577888765 555676665                   39


Q ss_pred             EEEEcCCCeeEEEeeCC------------eeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEecCCC-CC-----
Q 003842          623 RYWSINNGSCTRVFKGG------------TAQMRFQPHLG---RYLAAAAENVVSILDAETQACRLSLQGHT-KP-----  681 (792)
Q Consensus       623 ~iwdl~~~~~~~~~~~~------------~~~v~~sp~~~---~lla~s~dg~I~i~D~~t~~~~~~l~~h~-~~-----  681 (792)
                      ..||.++++.+..+...            .....+..++.   .+++++.+|.|+++|.++++.+....... .+     
T Consensus       278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~  357 (689)
T 1yiq_A          278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD  357 (689)
T ss_dssp             EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred             EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence            99999999998877531            01112222443   57777889999999999999875432211 00     


Q ss_pred             ---------------------------------eEEEEEcCCCCEEEEEeC-----------------------------
Q 003842          682 ---------------------------------IDSVCWDPSGELLASVSE-----------------------------  699 (792)
Q Consensus       682 ---------------------------------V~sv~~spdg~~Las~s~-----------------------------  699 (792)
                                                       -..++|+|+..+|++...                             
T Consensus       358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  437 (689)
T 1yiq_A          358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG  437 (689)
T ss_dssp             TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred             ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence                                             112688888887776521                             


Q ss_pred             -----------------CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc
Q 003842          700 -----------------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT  761 (792)
Q Consensus       700 -----------------d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~  761 (792)
                                       +.|+.||+.++   +.+..+..+. .+....+...+..+++++.|+.|++||.++++.+ .+.
T Consensus       438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~  513 (689)
T 1yiq_A          438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP  513 (689)
T ss_dssp             CCCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence                             25888999887   5555554433 2333456667889999999999999999999988 443


Q ss_pred             c-cCCCeEEEEEeCCCCE-EEEE
Q 003842          762 A-HEGLIAALAVSTETGY-VASA  782 (792)
Q Consensus       762 ~-h~~~V~sl~fspdg~~-LaSg  782 (792)
                      . +.....-+.|..+|+. |++.
T Consensus       514 ~~~~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          514 AASGVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             CSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCCcccCceEEEECCEEEEEEE
Confidence            3 3323345677788874 4443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.11  E-value=1.4e-09  Score=117.89  Aligned_cols=218  Identities=10%  Similarity=0.037  Sum_probs=148.5

Q ss_pred             CCEEEEEECCCCCeEEEEe--CCCcEEEEeCCCCCceeEEec-------ccCCCeEEEEEcCCCCeEEEEEeC-----CC
Q 003842          555 SLITDVRFSPSMPRLATSS--FDKTVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNKDDLICSCDG-----DG  620 (792)
Q Consensus       555 ~~V~~i~fspdg~~Lasgs--~Dg~V~IWdl~s~~~~i~~~~-------~h~~~V~sl~fspd~~~ll~sgs~-----Dg  620 (792)
                      ..+..|+++++|+++++..  .++.++||.+++ +. +..+.       .+...+.+|+|.+++. |+++-..     ++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DG-LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TE-EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CC-eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence            6789999999999888864  234366666653 33 33221       2456799999999864 5544333     57


Q ss_pred             cEEEEEcCCCeeEEEeeC---------CeeEEEEecCCCEEEEEE----cCCeEEEEECCCCeEEEEecCCCCCeE-EEE
Q 003842          621 EIRYWSINNGSCTRVFKG---------GTAQMRFQPHLGRYLAAA----AENVVSILDAETQACRLSLQGHTKPID-SVC  686 (792)
Q Consensus       621 ~I~iwdl~~~~~~~~~~~---------~~~~v~~sp~~~~lla~s----~dg~I~i~D~~t~~~~~~l~~h~~~V~-sv~  686 (792)
                      .|.+||+.+++.++.+..         ....+++.++++.++++.    .++.|.+||..+++....+.+|..... ...
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~  173 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID  173 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence            899999999987776642         236789998777766655    468999999999888777765432211 133


Q ss_pred             EcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECC---CCc-----
Q 003842          687 WDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMS---ENK-----  756 (792)
Q Consensus       687 ~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg-~I~IwDl~---~~~-----  756 (792)
                      +..+|..+.+.+.+ .++.|.                 ..+..++|+|+++.|+++...+ .|+.++..   .+.     
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~  236 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE  236 (343)
T ss_dssp             CEETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred             eeECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence            44466666655555 554443                 1356799999999999888776 66666532   111     


Q ss_pred             ---EEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          757 ---TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       757 ---~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                         .+...++......++++++|.++++...++.|.+||
T Consensus       237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d  275 (343)
T 2qe8_A          237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT  275 (343)
T ss_dssp             HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred             hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence               012224445677899999999998888889999986

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.11  E-value=9.3e-10  Score=117.38  Aligned_cols=254  Identities=11%  Similarity=0.077  Sum_probs=164.9

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccC
Q 003842          518 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS  597 (792)
Q Consensus       518 lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~  597 (792)
                      +.+..+| .|.+++.++.|..|| .+++.+..+..+...+.++.+..++. |++++.+  |..||. + +..+..+....
T Consensus        25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~-g~~~~~~~~~~   97 (330)
T 3hxj_A           25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-D-GTEKWRFDTKK   97 (330)
T ss_dssp             CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-C-GGGGGGSCC--
T ss_pred             ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-C-CcEEEEEECCC
Confidence            3444555 466677788899999 88887766665555667788877764 5555555  888886 3 33332222222


Q ss_pred             CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003842          598 ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS  674 (792)
Q Consensus       598 ~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~  674 (792)
                      ..+....+. + . .++.++.++.|..||.. ++....+...   ...+...++ +.+++++.++.|..||.. ++.+..
T Consensus        98 ~~~~~~~~~-~-~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~-g~l~vgt~~~~l~~~d~~-g~~~~~  171 (330)
T 3hxj_A           98 AIVSDFTIF-E-D-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSED-GTIYVGSNDNYLYAINPD-GTEKWR  171 (330)
T ss_dssp             ---CCEEEE-T-T-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTT-SCEEEECTTSEEEEECTT-SCEEEE
T ss_pred             CcccCceEE-C-C-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCC-CEEEEEcCCCEEEEECCC-CCEeEE
Confidence            222233333 3 3 34577788999999998 7766555432   233444444 557778888999999999 877777


Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003842          675 LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       675 l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~  754 (792)
                      +......+.++.++.++.++++.  +.|..|| .++   ..+..+......+.++++.+++. |++++.++.|..+|...
T Consensus       172 ~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g  244 (330)
T 3hxj_A          172 FKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG  244 (330)
T ss_dssp             EECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS
T ss_pred             EecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC
Confidence            76666677888888888866554  8888999 554   34444444456677888888775 67777788899998544


Q ss_pred             CcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          755 NKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       755 ~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .....+......+.++.+..++. |..++.+|.|..||
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          245 TEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAIN  281 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred             CEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence            44334444444455666665664 55677787787765

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.05  E-value=9.9e-11  Score=128.74  Aligned_cols=200  Identities=11%  Similarity=0.039  Sum_probs=111.1

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCee---
Q 003842          565 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---  641 (792)
Q Consensus       565 dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---  641 (792)
                      ++..|++++.||.|+.||..+ ++.+..+..  +.+.+..+..++. ++++++.||.|+.||..+++.+..+.....   
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~t-G~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRT-GSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTT-CCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCC-CCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence            567899999999999999998 566666554  4555555555544 555778899999999999887766543211   


Q ss_pred             -EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 003842          642 -QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL  719 (792)
Q Consensus       642 -~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~  719 (792)
                       ..-+...++.+++++.++.|+.||.++++.+..+..+.    .+.++|++..|++++.+ .|+.||.++++....+.. 
T Consensus        84 ~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-  158 (369)
T 2hz6_A           84 QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY-  158 (369)
T ss_dssp             TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEE-
T ss_pred             ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec-
Confidence             00011145678888889999999999999988776543    23456678888888877 999999998854322211 


Q ss_pred             ecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEE-EEEeCCCC
Q 003842          720 SCNGNKFHSCVFHPTY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA-LAVSTETG  777 (792)
Q Consensus       720 ~~~~~~i~si~fspdg---~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~s-l~fspdg~  777 (792)
                      ..    ....++..+.   ..+++++.+|.|+.||..+++.+.......++.. ..++.++.
T Consensus       159 ~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          159 FD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL  216 (369)
T ss_dssp             EE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred             cc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence            11    1222333332   5688889999999999999998744444555543 34445554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.04  E-value=2e-09  Score=122.94  Aligned_cols=242  Identities=13%  Similarity=0.081  Sum_probs=161.8

Q ss_pred             CCCEEEEEeC-CCeEEEEECCCCceeEEecc-CCCCEEEEEE-C-CCCCeEEEEe------------------CCCcEEE
Q 003842          523 DGKLLATGGH-DKKAVLWHTDTLKSKTNLEE-HSSLITDVRF-S-PSMPRLATSS------------------FDKTVRV  580 (792)
Q Consensus       523 dg~~Lasgs~-Dg~I~vWdl~t~~~~~~l~~-h~~~V~~i~f-s-pdg~~Lasgs------------------~Dg~V~I  580 (792)
                      ||++|++... ++.|.+.|+++.++...+.- ....+..+++ + |+++++++++                  +++.|.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            8888888765 45699999999998886643 2356889998 5 8999998885                  3467999


Q ss_pred             EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC--------------cEEEEEcCCCeeEEEeeCCeeEEEEe
Q 003842          581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--------------EIRYWSINNGSCTRVFKGGTAQMRFQ  646 (792)
Q Consensus       581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg--------------~I~iwdl~~~~~~~~~~~~~~~v~~s  646 (792)
                      +|.++ .+.+..+.-.. .-..++++|+++.+++++....              .|.++|+....            .+.
T Consensus       180 ID~~t-~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~------------~~v  245 (595)
T 1fwx_A          180 VDADK-WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE------------KAI  245 (595)
T ss_dssp             EETTT-TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH------------HHH
T ss_pred             EECCC-CeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee------------Eec
Confidence            99987 45555544222 3467889999988887775542              24444433211            122


Q ss_pred             cCCCEEEEEEcCCeEEEEECCC--CeE-EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCC--------Cc
Q 003842          647 PHLGRYLAAAAENVVSILDAET--QAC-RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGS--------EG  713 (792)
Q Consensus       647 p~~~~lla~s~dg~I~i~D~~t--~~~-~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~--------~~  713 (792)
                      ++++....    +.|.|.|.++  ++. +..+.. .....++.++|||+++++++..  .|.++|+.+..        ..
T Consensus       246 ~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~  320 (595)
T 1fwx_A          246 AAGDYQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR  320 (595)
T ss_dssp             HHTCSEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred             cCCCeeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence            33443332    5699999998  544 444432 2345689999999999988865  99999998531        01


Q ss_pred             ceEEEeecCCCceEEEEEeCCCCEEEE-EEcCCeEEEEECCC----------CcEE-EEcccCCCe-----EEEEEeCCC
Q 003842          714 ECVHELSCNGNKFHSCVFHPTYPSLLV-IGCYQSLELWNMSE----------NKTM-TLTAHEGLI-----AALAVSTET  776 (792)
Q Consensus       714 ~~i~~~~~~~~~i~si~fspdg~~L~s-gs~dg~I~IwDl~~----------~~~~-~~~~h~~~V-----~sl~fspdg  776 (792)
                      ..+.....-+.....++|+++| ++++ ..-++.|.+||+.+          ...+ ++..|..+-     .++.+++||
T Consensus       321 ~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG  399 (595)
T 1fwx_A          321 SAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN  399 (595)
T ss_dssp             GGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS
T ss_pred             cceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC
Confidence            1222222345568899999999 5554 45578999999977          4444 444443321     223457999


Q ss_pred             CEEEEEeC
Q 003842          777 GYVASASH  784 (792)
Q Consensus       777 ~~LaSgs~  784 (792)
                      ++|++++.
T Consensus       400 k~l~~~Nk  407 (595)
T 1fwx_A          400 DWLVCLSK  407 (595)
T ss_dssp             SEEEEEES
T ss_pred             CEEEEcCC
Confidence            99998764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.04  E-value=3.2e-08  Score=117.33  Aligned_cols=261  Identities=13%  Similarity=0.123  Sum_probs=169.5

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccCCCC----------E-EEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----------I-TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT  592 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~----------V-~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~  592 (792)
                      +..|++++.++.|+.+|..+|+.+-++......          + ..+++  .+..|++++.|+.|+.+|..+ ++.+..
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~t-G~~~W~  142 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKT-GKAIWS  142 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTT-CCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCC-CCEeee
Confidence            457778888999999999999998877643211          0 11222  355788899999999999998 555544


Q ss_pred             ecccC----CCeEE-EEEcCCCCeEEEEEe-----CCCcEEEEEcCCCeeEEEeeCC----e------------------
Q 003842          593 FMGHS----ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGG----T------------------  640 (792)
Q Consensus       593 ~~~h~----~~V~s-l~fspd~~~ll~sgs-----~Dg~I~iwdl~~~~~~~~~~~~----~------------------  640 (792)
                      +....    ..+.+ ..+.  +..+++..+     .+|.|+.||.++++.+..+...    .                  
T Consensus       143 ~~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  220 (668)
T 1kv9_A          143 QQTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD  220 (668)
T ss_dssp             EECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred             eccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence            43211    11111 1111  233443322     2589999999999998876421    0                  


Q ss_pred             ------------eEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEecC--CC-------C
Q 003842          641 ------------AQMRFQPHLGRYLAAAAEN-------------------VVSILDAETQACRLSLQG--HT-------K  680 (792)
Q Consensus       641 ------------~~v~~sp~~~~lla~s~dg-------------------~I~i~D~~t~~~~~~l~~--h~-------~  680 (792)
                                  ..+.+.+..+.+++++.++                   .|..+|.++++.+..+..  |.       .
T Consensus       221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~  300 (668)
T 1kv9_A          221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ  300 (668)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence                        1367888888888887765                   399999999999988764  32       2


Q ss_pred             CeEEEEEcCCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeecCC------------Cc-------------------
Q 003842          681 PIDSVCWDPSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG------------NK-------------------  725 (792)
Q Consensus       681 ~V~sv~~spdg~---~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~------------~~-------------------  725 (792)
                      +.....+..+|+   +|+.++.+ .++++|..+++.   +.......            .+                   
T Consensus       301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~  377 (668)
T 1kv9_A          301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL---ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP  377 (668)
T ss_dssp             CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred             CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE---eccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence            233333334665   67777777 999999988843   21111100            00                   


Q ss_pred             -----eEEEEEeCCCCEEEEEE------------------------------------cCCeEEEEECCCCcEEEEcccC
Q 003842          726 -----FHSCVFHPTYPSLLVIG------------------------------------CYQSLELWNMSENKTMTLTAHE  764 (792)
Q Consensus       726 -----i~si~fspdg~~L~sgs------------------------------------~dg~I~IwDl~~~~~~~~~~h~  764 (792)
                           ...++++|+...+++..                                    .+|.|..||+.+++.+....+.
T Consensus       378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~  457 (668)
T 1kv9_A          378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP  457 (668)
T ss_dssp             TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred             ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence                 11267888777666522                                    2378999999999988433333


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          765 GLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       765 ~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ..+....+...+.+|++++.||.|++||
T Consensus       458 ~~~~~~~~~t~gg~vf~g~~dg~l~a~d  485 (668)
T 1kv9_A          458 THWNGGTLSTAGNLVFQGTAAGQMHAYS  485 (668)
T ss_dssp             SSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             CCCcCceeEeCCCEEEEECCcccchhhh
Confidence            4444445556788899999999999986

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.01  E-value=1.4e-06  Score=105.30  Aligned_cols=261  Identities=12%  Similarity=0.075  Sum_probs=173.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc--------CCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--------HSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~--------h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      ...|.+++.+++|+ |.+|+.++-|.+||..++........        ....|.+++..+++.+|.+|+.++-|.+||.
T Consensus       356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~  434 (795)
T 4a2l_A          356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR  434 (795)
T ss_dssp             CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred             CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence            45699999999886 55577787899999887665443211        2467999999888875777888777999998


Q ss_pred             CCCCceeEEec-----ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---------CCeeEEEEecCC
Q 003842          584 DNPGYSLRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQMRFQPHL  649 (792)
Q Consensus       584 ~s~~~~i~~~~-----~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---------~~~~~v~~sp~~  649 (792)
                      .+ +. +..+.     .....|.++...+++. +. .|+. +.|.+||..+++......         ..+.++....++
T Consensus       435 ~~-~~-~~~~~~~~~~l~~~~v~~i~~d~~g~-lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g  509 (795)
T 4a2l_A          435 NS-GQ-VENFNQRNSQLVNENVYAILPDGEGN-LW-LGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK  509 (795)
T ss_dssp             TT-CC-EEEECTTTSCCSCSCEEEEEECSSSC-EE-EEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC
T ss_pred             CC-Cc-EEEeecCCCCcCCCeeEEEEECCCCC-EE-EEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC
Confidence            86 33 33332     1345799999888765 33 3444 558999998876554321         234556566554


Q ss_pred             CEEEEEEcCCeEEEEECCCCeEEEEec-------CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeec-
Q 003842          650 GRYLAAAAENVVSILDAETQACRLSLQ-------GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC-  721 (792)
Q Consensus       650 ~~lla~s~dg~I~i~D~~t~~~~~~l~-------~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~-  721 (792)
                       .+.+++. +.|.+||..+.+.  .+.       .....|.+|..+++|.+.++... .|..||..+.    .+..+.. 
T Consensus       510 -~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~----~~~~~~~~  580 (795)
T 4a2l_A          510 -RLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDK----QIKRYNTT  580 (795)
T ss_dssp             -CEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTT----EEEEECGG
T ss_pred             -CEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCC----cEEEeCCC
Confidence             4555666 6688899887765  222       12346899999999987765544 7888997653    2222221 


Q ss_pred             ---CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC----Ce--EEEEEeCCCCEEEEEeCCCcEEE
Q 003842          722 ---NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG----LI--AALAVSTETGYVASASHDKFVKL  790 (792)
Q Consensus       722 ---~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~----~V--~sl~fspdg~~LaSgs~DG~I~I  790 (792)
                         ....|.++...++|...+ ++ ++.|..||..+++...+....+    .+  .++...++|.+++ |+.+|.+++
T Consensus       581 ~gl~~~~i~~i~~d~~g~lWi-~t-~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl~~~  655 (795)
T 4a2l_A          581 NGLPNNVVYGILEDSFGRLWL-ST-NRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYF-GGINGITTF  655 (795)
T ss_dssp             GTCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEE-EETTEEEEE
T ss_pred             CCCchhheEEEEECCCCCEEE-Ec-CCceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEE-ecCCceEEE
Confidence               134588888888887544 44 4568889998887765554333    22  4667777887554 667776554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.01  E-value=1.1e-07  Score=98.94  Aligned_cols=203  Identities=9%  Similarity=0.045  Sum_probs=144.1

Q ss_pred             ceeEEeccCC--CCEEEEEECCCCCeEEEEeC--CCcEEEEeCCCCCceeEEec-ccCCCeEEEEEcCCCCeEEEEEeCC
Q 003842          545 KSKTNLEEHS--SLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGD  619 (792)
Q Consensus       545 ~~~~~l~~h~--~~V~~i~fspdg~~Lasgs~--Dg~V~IWdl~s~~~~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~D  619 (792)
                      +.+.++. |.  .....+.|++++.++++.+.  ++.|+++|+.+ ++.+..+. +.......+++.  ++.++++.-.+
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t-g~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQT-GKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTT-CCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCC-CCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence            3445553 33  34689999998754444443  57899999998 55666554 222233456665  56777777789


Q ss_pred             CcEEEEEcCCCeeEEEeeCC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC-----CCeEEEEEcCCCCE
Q 003842          620 GEIRYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-----KPIDSVCWDPSGEL  693 (792)
Q Consensus       620 g~I~iwdl~~~~~~~~~~~~-~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~-----~~V~sv~~spdg~~  693 (792)
                      +.|.++|..+.+.+..+..+ .....+++++++++++..++.|.++|.++.+.+..+.-..     ..++.+.|. +|++
T Consensus        86 ~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l  164 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV  164 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence            99999999999999888654 4456677888988888888999999999998887766321     236678888 6765


Q ss_pred             EEEEeCC-eEEEEECCCCCCcceEEEeecC-------------CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCC
Q 003842          694 LASVSED-SVRVWTVGSGSEGECVHELSCN-------------GNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSEN  755 (792)
Q Consensus       694 Las~s~d-~I~IwDl~s~~~~~~i~~~~~~-------------~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~~~  755 (792)
                      ++....+ .|.+.|..++   +.+..+...             ......++|+|+++.|++++ ..+.|++.++...
T Consensus       165 yvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          165 WANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            5555444 9999999887   445444421             13568999999998777766 4578888887554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.97  E-value=2.2e-06  Score=103.32  Aligned_cols=270  Identities=8%  Similarity=-0.029  Sum_probs=173.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--------------cCCCCEEEEEECCCCCeEEEEeCCCc
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--------------EHSSLITDVRFSPSMPRLATSSFDKT  577 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~--------------~h~~~V~~i~fspdg~~Lasgs~Dg~  577 (792)
                      ...|.++....+|. |..|+..+-|.+||..+........              .....|.+|....+|. |..|+.++-
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G  334 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG  334 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence            46799999998885 5556665668889987765432211              1346799999998875 666776677


Q ss_pred             EEEEeCCCCCceeEEec----------ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe------eCCee
Q 003842          578 VRVWDADNPGYSLRTFM----------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KGGTA  641 (792)
Q Consensus       578 V~IWdl~s~~~~i~~~~----------~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~------~~~~~  641 (792)
                      |..|+..+..  ...+.          -....|.+++...++.  |..|+.++-|.+||..++......      ...+.
T Consensus       335 l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~  410 (781)
T 3v9f_A          335 INFISNAPPT--FHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL  410 (781)
T ss_dssp             EEEECSSCCS--CEEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEECC-----CCCSBEE
T ss_pred             EEEeCCCCCc--ceeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE
Confidence            9999987532  22221          1235699999887765  335666777999998765433211      12234


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEe
Q 003842          642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL  719 (792)
Q Consensus       642 ~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~--~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~  719 (792)
                      ++....+ +.+.+++.++.|..||..+++......  .....|.++..+++|.+.+.. .+.|.+||..++.. ..+...
T Consensus       411 ~i~~d~~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt-~~Gl~~~~~~~~~~-~~~~~~  487 (781)
T 3v9f_A          411 CSLKDSE-GNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGT-HAGVFVIDLASKKV-IHHYDT  487 (781)
T ss_dssp             EEEECTT-SCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEE-TTEEEEEESSSSSC-CEEECT
T ss_pred             EEEECCC-CCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEE-CCceEEEeCCCCeE-EecccC
Confidence            4444444 567778877889999988776543221  134679999998888766554 47899999876432 222111


Q ss_pred             e---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc----cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          720 S---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA----HEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       720 ~---~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~----h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .   .....|.++...+++. |.+++.++.|..||..+++...+..    ....|.++...++|.+.++. .+|.|..||
T Consensus       488 ~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d  565 (781)
T 3v9f_A          488 SNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPS  565 (781)
T ss_dssp             TTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred             cccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence            1   1135688888888887 5556665568889988876655432    23568899998888866644 466546654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.97  E-value=6e-07  Score=93.18  Aligned_cols=220  Identities=9%  Similarity=0.010  Sum_probs=140.7

Q ss_pred             CeEEEEeCCCcEEEEeCCCCCce----eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CC
Q 003842          567 PRLATSSFDKTVRVWDADNPGYS----LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GG  639 (792)
Q Consensus       567 ~~Lasgs~Dg~V~IWdl~s~~~~----i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~  639 (792)
                      .+|+.+.. +.|+.++++.....    ...+......+.+++|++++..++++...++.|..+++........+.   ..
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            35555554 46888888753211    112222234578999999888888888788999999998765444443   24


Q ss_pred             eeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe-C--C-eEEEEECCCCCCcc
Q 003842          640 TAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-E--D-SVRVWTVGSGSEGE  714 (792)
Q Consensus       640 ~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s-~--d-~I~IwDl~s~~~~~  714 (792)
                      ...+++.++++.++++.. .+.|.++|.+.......+.........+++++++.+|+.+. .  . .|.++++... ...
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~  159 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRR  159 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcE
Confidence            567899998887777665 67999999875433222322224578999999665554444 2  2 7888887532 212


Q ss_pred             eEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe-CCCcEEEeC
Q 003842          715 CVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS-HDKFVKLWK  792 (792)
Q Consensus       715 ~i~~~~~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs-~DG~I~IWd  792 (792)
                      .+  ..........+++++++.+|+++... +.|.++|+.+.....+.........+++.  +..|+.+. ..+.|.++|
T Consensus       160 ~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d  235 (267)
T 1npe_A          160 IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD  235 (267)
T ss_dssp             EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEe
Confidence            22  11233467899999998888777654 69999999866544333333445677764  44555454 457777653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.96  E-value=1.3e-06  Score=105.65  Aligned_cols=263  Identities=7%  Similarity=0.050  Sum_probs=177.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-------CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-------h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      ...|.++..+++|.+.+ |+.+ -|.+||..++........       ....|.+|...++|. |..|+.++-|.+|+..
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~  338 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI  338 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred             CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence            46799999999987544 5555 588999887765443221       236799999998885 5567777779999876


Q ss_pred             CCCceeEEecc-------cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----------CCeeEEEEe
Q 003842          585 NPGYSLRTFMG-------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----------GGTAQMRFQ  646 (792)
Q Consensus       585 s~~~~i~~~~~-------h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----------~~~~~v~~s  646 (792)
                      +..  +..+..       ....|.+|+...++.  |..|+.++-|.+||..++.......           ..+.+++..
T Consensus       339 ~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d  414 (795)
T 4a2l_A          339 RNR--FKNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD  414 (795)
T ss_dssp             GGS--SEEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred             ccc--ceEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence            522  222221       235699999888765  3457778789999988776544321           234456666


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCCeEEEEec----CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEee--
Q 003842          647 PHLGRYLAAAAENVVSILDAETQACRLSLQ----GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELS--  720 (792)
Q Consensus       647 p~~~~lla~s~dg~I~i~D~~t~~~~~~l~----~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~--  720 (792)
                      .++..+.+++.++.|.+||..+++......    .....|.++..+++|.+++... +.|.+||..++   . +..+.  
T Consensus       415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~---~-~~~~~~~  489 (795)
T 4a2l_A          415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR---S-FTTIEKE  489 (795)
T ss_dssp             TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT---E-EEECCBC
T ss_pred             CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC---e-EEEcccc
Confidence            665548888888889999998876544322    1345799999999888776655 67889998654   2 22221  


Q ss_pred             -----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc-------ccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003842          721 -----CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-------AHEGLIAALAVSTETGYVASASHDKFV  788 (792)
Q Consensus       721 -----~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~-------~h~~~V~sl~fspdg~~LaSgs~DG~I  788 (792)
                           .....|.++...+++.. .+++. +.|..||..+++. .+.       .....|.++..+++|.+.++. .+| |
T Consensus       490 ~~~~~~~~~~i~~i~~d~~g~l-Wigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G-l  564 (795)
T 4a2l_A          490 KDGTPVVSKQITTLFRDSHKRL-WIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-REG-F  564 (795)
T ss_dssp             TTCCBCCCCCEEEEEECTTCCE-EEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SSC-E
T ss_pred             ccccccCCceEEEEEECCCCCE-EEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CCC-c
Confidence                 12356888988888874 44555 5689999887765 332       134578999999988866644 344 5


Q ss_pred             EEe
Q 003842          789 KLW  791 (792)
Q Consensus       789 ~IW  791 (792)
                      ..|
T Consensus       565 ~~~  567 (795)
T 4a2l_A          565 YCF  567 (795)
T ss_dssp             EEE
T ss_pred             eeE
Confidence            444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.95  E-value=2.7e-07  Score=107.28  Aligned_cols=259  Identities=11%  Similarity=0.098  Sum_probs=163.7

Q ss_pred             CCEEEEEeC-CCeEEEEEC-CCCceeEEeccCCC-C----------EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003842          524 GKLLATGGH-DKKAVLWHT-DTLKSKTNLEEHSS-L----------ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL  590 (792)
Q Consensus       524 g~~Lasgs~-Dg~I~vWdl-~t~~~~~~l~~h~~-~----------V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i  590 (792)
                      +..|++++. ++.|+.+|. ++++.+-.+..... .          ...+++  .+..|++++.|+.|..+|..+ ++.+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~t-G~~~  138 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKT-GKIN  138 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT-CCEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCC-CCEE
Confidence            446667777 889999999 89998877653221 0          011222  355888888999999999988 4444


Q ss_pred             EEecccC----CCeE-EEEEcCCCCeEEEEEeC------CCcEEEEEcCCCeeEEEeeCCe-------------------
Q 003842          591 RTFMGHS----ASVM-SLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFKGGT-------------------  640 (792)
Q Consensus       591 ~~~~~h~----~~V~-sl~fspd~~~ll~sgs~------Dg~I~iwdl~~~~~~~~~~~~~-------------------  640 (792)
                      ..+....    ..+. +..+.  +..++ +++.      ++.|+.+|.++++.+..+....                   
T Consensus       139 W~~~~~~~~~~~~~~~~P~v~--~g~v~-vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G  215 (571)
T 2ad6_A          139 WEVEVCDPKVGSTLTQAPFVA--KDTVL-MGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG  215 (571)
T ss_dssp             EEEECCCGGGTCBCCSCCEEE--TTEEE-EECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             EEecCCCCCccceeccCCEEE--CCEEE-EEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence            4433111    0121 11111  23444 4443      7999999999999887765321                   


Q ss_pred             ----------------------eEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEecC--CC-
Q 003842          641 ----------------------AQMRFQPHLGRYLAAAAE----------------NVVSILDAETQACRLSLQG--HT-  679 (792)
Q Consensus       641 ----------------------~~v~~sp~~~~lla~s~d----------------g~I~i~D~~t~~~~~~l~~--h~-  679 (792)
                                            ..+++.+..+.++++..+                +.|..+|.++++.+..+..  |. 
T Consensus       216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~  295 (571)
T 2ad6_A          216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDE  295 (571)
T ss_dssp             CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCS
T ss_pred             ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcc
Confidence                                  125667777788777642                3599999999999887753  21 


Q ss_pred             -------CCeEEEEEcCCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeecCC-------------Cce---------
Q 003842          680 -------KPIDSVCWDPSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG-------------NKF---------  726 (792)
Q Consensus       680 -------~~V~sv~~spdg~---~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~-------------~~i---------  726 (792)
                             .++. +....+|+   +++.++.+ .++++|..+++   .+..+....             .++         
T Consensus       296 ~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~  371 (571)
T 2ad6_A          296 WDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN---LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRM  371 (571)
T ss_dssp             SCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCT
T ss_pred             cccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC---EEeeecccCCccccccccccCCceecccccCCCC
Confidence                   1221 22224674   56667766 99999998873   333322111             111         


Q ss_pred             -----------------EEEEEeCCCCEEEEEEc-------------------------------------CCeEEEEEC
Q 003842          727 -----------------HSCVFHPTYPSLLVIGC-------------------------------------YQSLELWNM  752 (792)
Q Consensus       727 -----------------~si~fspdg~~L~sgs~-------------------------------------dg~I~IwDl  752 (792)
                                       ..++|+|+...|++...                                     ++.|+.||+
T Consensus       372 ~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~  451 (571)
T 2ad6_A          372 DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL  451 (571)
T ss_dssp             TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT
T ss_pred             CCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEEC
Confidence                             24578888887777642                                     468999999


Q ss_pred             CCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          753 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       753 ~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .+++.+....+...+.+..+...+.+|+.++.||.|+.||
T Consensus       452 ~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D  491 (571)
T 2ad6_A          452 TTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD  491 (571)
T ss_dssp             TTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             CCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence            9999874333333343333344566777888999999886

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.91  E-value=1.7e-07  Score=96.66  Aligned_cols=191  Identities=14%  Similarity=0.171  Sum_probs=135.5

Q ss_pred             eeEEeccCC--CCEEEEEECCCCCeEEEEeCCC--cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc
Q 003842          546 SKTNLEEHS--SLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE  621 (792)
Q Consensus       546 ~~~~l~~h~--~~V~~i~fspdg~~Lasgs~Dg--~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~  621 (792)
                      .+.++. |.  .....|.|+ ++.++++.+.+|  .|+++|+.+ ++.+..+.-. .......+.++++.+++....++.
T Consensus        33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~T-gkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~  108 (262)
T 3nol_A           33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIES-GKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTT-CCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSE
T ss_pred             EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCC-CcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCE
Confidence            444553 33  335788888 666666777766  899999998 5555555432 233332233345677777777999


Q ss_pred             EEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC--C---CCeEEEEEcCCCCEEEE
Q 003842          622 IRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH--T---KPIDSVCWDPSGELLAS  696 (792)
Q Consensus       622 I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h--~---~~V~sv~~spdg~~Las  696 (792)
                      +.+||..+.+.+..+........+.++++.++++..++.|.++|..+.+.+.++...  .   ..++.+.|. +|++++.
T Consensus       109 v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan  187 (262)
T 3nol_A          109 GFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN  187 (262)
T ss_dssp             EEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred             EEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence            999999999999998865555566678888888887889999999999888776542  1   334567776 6766655


Q ss_pred             EeCC-eEEEEECCCCCCcceEEEeecC------------CCceEEEEEeCCCCEEEEEEcC
Q 003842          697 VSED-SVRVWTVGSGSEGECVHELSCN------------GNKFHSCVFHPTYPSLLVIGCY  744 (792)
Q Consensus       697 ~s~d-~I~IwDl~s~~~~~~i~~~~~~------------~~~i~si~fspdg~~L~sgs~d  744 (792)
                      .-.+ .|.+.|..++   +.+..+...            ....+.++|+|+++.|++.+..
T Consensus       188 ~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          188 VWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             ETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            5444 9999999887   444444432            2356899999999988888765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.91  E-value=3.8e-07  Score=106.19  Aligned_cols=261  Identities=11%  Similarity=0.068  Sum_probs=163.0

Q ss_pred             CCEEEEEeC-CCeEEEEEC-CCCceeEEeccCCCC-----------EEEEEECCCCCe----EEEEeCCCcEEEEeCCCC
Q 003842          524 GKLLATGGH-DKKAVLWHT-DTLKSKTNLEEHSSL-----------ITDVRFSPSMPR----LATSSFDKTVRVWDADNP  586 (792)
Q Consensus       524 g~~Lasgs~-Dg~I~vWdl-~t~~~~~~l~~h~~~-----------V~~i~fspdg~~----Lasgs~Dg~V~IWdl~s~  586 (792)
                      +..|++++. ++.|+.+|. .+++.+-.+......           ...+++.|.+..    |++++.|+.|+.+|..+ 
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T-  140 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET-  140 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT-
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC-
Confidence            446777777 889999999 899988777543210           123455443444    88899999999999998 


Q ss_pred             CceeEEecccC----CCeEE-EEEcCCCCeEEEEEe------CCCcEEEEEcCCCeeEEEeeCCee--------------
Q 003842          587 GYSLRTFMGHS----ASVMS-LDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTA--------------  641 (792)
Q Consensus       587 ~~~i~~~~~h~----~~V~s-l~fspd~~~ll~sgs------~Dg~I~iwdl~~~~~~~~~~~~~~--------------  641 (792)
                      ++.+-......    ..+.+ ..+. + ..++ +++      .+|.|+.||.++++.+..+.....              
T Consensus       141 G~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~-vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~  217 (599)
T 1w6s_A          141 GETVWKVENSDIKVGSTLTIAPYVV-K-DKVI-IGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN  217 (599)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEE-T-TEEE-ECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred             CCEEEeecCCCCCccceeecCCEEE-C-CEEE-EEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence            44444332211    01211 1122 2 3344 443      379999999999999877653211              


Q ss_pred             ---------------------------EEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEecCC
Q 003842          642 ---------------------------QMRFQPHLGRYLAAAAE----------------NVVSILDAETQACRLSLQGH  678 (792)
Q Consensus       642 ---------------------------~v~~sp~~~~lla~s~d----------------g~I~i~D~~t~~~~~~l~~h  678 (792)
                                                 .+.+.+..+.+++++.+                +.|..+|.++++.+..+...
T Consensus       218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~  297 (599)
T 1w6s_A          218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT  297 (599)
T ss_dssp             GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred             ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence                                       24566778888888765                38999999999998877642


Q ss_pred             CC----------CeEEEEEc-CCC---CEEEEEeCC-eEEEEECCCCCCcceEEEeecC-------------CCc-----
Q 003842          679 TK----------PIDSVCWD-PSG---ELLASVSED-SVRVWTVGSGSEGECVHELSCN-------------GNK-----  725 (792)
Q Consensus       679 ~~----------~V~sv~~s-pdg---~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~-------------~~~-----  725 (792)
                      ..          ++. +... .+|   ..++.++.+ .++++|.++++   .+......             ..+     
T Consensus       298 ~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~~~~~  373 (599)
T 1w6s_A          298 PHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA---LVSANKLDDTVNVFKSVDLKTGQPVRDPE  373 (599)
T ss_dssp             TTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCCEEECGG
T ss_pred             CCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC---EeecccccCCcccccccccCCCceeeccc
Confidence            21          121 2222 567   466667777 99999998874   33322211             011     


Q ss_pred             ---------------------eEEEEEeCCCCEEEEEE---------------------------------------cCC
Q 003842          726 ---------------------FHSCVFHPTYPSLLVIG---------------------------------------CYQ  745 (792)
Q Consensus       726 ---------------------i~si~fspdg~~L~sgs---------------------------------------~dg  745 (792)
                                           ...++|+|+...+++..                                       ..|
T Consensus       374 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G  453 (599)
T 1w6s_A          374 YGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLG  453 (599)
T ss_dssp             GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCE
T ss_pred             cCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcC
Confidence                                 12456777766655431                                       246


Q ss_pred             eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          746 SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       746 ~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .|..||+.+++.+-...+..++..-.+...+.+|+.++.||.|+.||
T Consensus       454 ~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D  500 (599)
T 1w6s_A          454 QIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD  500 (599)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             eEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence            89999999998873333332232222333566777888999999875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.90  E-value=3e-07  Score=95.62  Aligned_cols=202  Identities=8%  Similarity=0.035  Sum_probs=139.2

Q ss_pred             cceeeeeeeecCCC--CeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCceeEEeccCC-CCEEEEEECCCCCeEEE-Ee
Q 003842          500 FSFKEANSVRASTS--KVICCHFSSDGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLAT-SS  573 (792)
Q Consensus       500 ~~~~~~~~l~~H~~--~V~~lafspdg~~Lasgs~--Dg~I~vWdl~t~~~~~~l~~h~-~~V~~i~fspdg~~Las-gs  573 (792)
                      ..++.+.++. |..  ....++|++|+.++++.+.  ++.|.++|+.+++.+..+.-.. .....+++.  ++.|+. .-
T Consensus         7 ~~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~   83 (266)
T 2iwa_A            7 YIVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVW   83 (266)
T ss_dssp             EEEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEET
T ss_pred             cCceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEe
Confidence            3455566664 433  3689999998754444443  5799999999999998876322 223345554  445544 45


Q ss_pred             CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC--------eeEEEE
Q 003842          574 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--------TAQMRF  645 (792)
Q Consensus       574 ~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~--------~~~v~~  645 (792)
                      .++.|.++|..+ .+.+..+......  ...+++|++.++++- .++.|.++|..+.+.+..+.-.        ...+.|
T Consensus        84 ~~~~v~viD~~t-~~v~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~  159 (266)
T 2iwa_A           84 LKNIGFIYDRRT-LSNIKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY  159 (266)
T ss_dssp             TCSEEEEEETTT-TEEEEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             cCCEEEEEECCC-CcEEEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence            678999999987 5666666432122  233556777777554 6889999999998888776532        345666


Q ss_pred             ecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCC-------------CCCeEEEEEcCCCCEEEEEeCC--eEEEEECCC
Q 003842          646 QPHLGRYLAAAA-ENVVSILDAETQACRLSLQGH-------------TKPIDSVCWDPSGELLASVSED--SVRVWTVGS  709 (792)
Q Consensus       646 sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h-------------~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s  709 (792)
                      . + +++++... ++.|.+.|..+++++..+...             ......|+|+++++.|++++..  .|.+.++..
T Consensus       160 ~-d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          160 I-N-GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             E-T-TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             E-C-CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            6 4 46666664 789999999999998887632             1346899999999877666654  888888754


Q ss_pred             C
Q 003842          710 G  710 (792)
Q Consensus       710 ~  710 (792)
                      .
T Consensus       238 ~  238 (266)
T 2iwa_A          238 V  238 (266)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.88  E-value=6.1e-08  Score=110.73  Aligned_cols=204  Identities=12%  Similarity=0.081  Sum_probs=145.3

Q ss_pred             CeEEEEE-c-CCCCEEEEEe------------------CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe
Q 003842          514 KVICCHF-S-SDGKLLATGG------------------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS  573 (792)
Q Consensus       514 ~V~~laf-s-pdg~~Lasgs------------------~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs  573 (792)
                      .+..+++ + |+++++++++                  .++.|.++|.++.+....+.-.. ....++++|+|+++++++
T Consensus       135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~  213 (595)
T 1fwx_A          135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTS  213 (595)
T ss_dssp             SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEE
T ss_pred             CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEe
Confidence            4778887 5 8999988884                  34679999999999888887433 346678999999999888


Q ss_pred             CCC--------------------------------------cEEEEeCCC--CCceeEEecccCCCeEEEEEcCCCCeEE
Q 003842          574 FDK--------------------------------------TVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLI  613 (792)
Q Consensus       574 ~Dg--------------------------------------~V~IWdl~s--~~~~i~~~~~h~~~V~sl~fspd~~~ll  613 (792)
                      ++.                                      .|.|.|..+  ....+..+.. .....++.++|||++++
T Consensus       214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~  292 (595)
T 1fwx_A          214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLC  292 (595)
T ss_dssp             SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEE
T ss_pred             cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEE
Confidence            653                                      366677765  2221333332 23456899999999999


Q ss_pred             EEEeCCCcEEEEEcCCCe------------eEEEee--CCeeEEEEecCCCEEEEEE-cCCeEEEEECCC----------
Q 003842          614 CSCDGDGEIRYWSINNGS------------CTRVFK--GGTAQMRFQPHLGRYLAAA-AENVVSILDAET----------  668 (792)
Q Consensus       614 ~sgs~Dg~I~iwdl~~~~------------~~~~~~--~~~~~v~~sp~~~~lla~s-~dg~I~i~D~~t----------  668 (792)
                      +++..+.+|.++|+.+.+            .+....  .+...++|++++ ++++.. .|+.|.+||+.+          
T Consensus       293 V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~  371 (595)
T 1fwx_A          293 VAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKV  371 (595)
T ss_dssp             EECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSC
T ss_pred             EeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccccc
Confidence            999899999999999653            233333  356778999999 555444 499999999977          


Q ss_pred             CeEEEEecCCCCCe-----EEEEEcCCCCEEEEEeC---CeE-----------EEEECCCCCCcceEEEeec
Q 003842          669 QACRLSLQGHTKPI-----DSVCWDPSGELLASVSE---DSV-----------RVWTVGSGSEGECVHELSC  721 (792)
Q Consensus       669 ~~~~~~l~~h~~~V-----~sv~~spdg~~Las~s~---d~I-----------~IwDl~s~~~~~~i~~~~~  721 (792)
                      ...+.++..|-.+-     ..+.+++||++|++...   |.+           .++|+. +...+.+.....
T Consensus       372 ~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis-~~~m~lv~d~p~  442 (595)
T 1fwx_A          372 DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDIS-GDKMVLVHDGPT  442 (595)
T ss_dssp             CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECS-SSSCEEEEEEEE
T ss_pred             ceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcC-CCcEEEEEEEcC
Confidence            56777777664432     12345799999998764   355           899994 445566655544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.87  E-value=9.5e-06  Score=97.78  Aligned_cols=271  Identities=8%  Similarity=0.020  Sum_probs=170.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-------CCCCEEEEEECC--CCCeEEEEeCCCcEEEEeC
Q 003842          513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSP--SMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-------h~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWdl  583 (792)
                      ..|.+|....+|+.|.+|+.++-|..||..+.+.......       ....|.+|....  ++ .|..++.++.|..||.
T Consensus        66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~~~~  144 (781)
T 3v9f_A           66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEYLDI  144 (781)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEEEET
T ss_pred             cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeEEEC
Confidence            4699999999997466777775799999987665433111       123689998887  66 4555664555889998


Q ss_pred             CCCCceeEEecc------cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----------eCCeeEEEEec
Q 003842          584 DNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----------KGGTAQMRFQP  647 (792)
Q Consensus       584 ~s~~~~i~~~~~------h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----------~~~~~~v~~sp  647 (792)
                      .+ + .+..+..      ....|.+|....++. +. .++.++.|..||..+++.....          ...+.++....
T Consensus       145 ~~-~-~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~  220 (781)
T 3v9f_A          145 AT-G-KFTHYNKSTVPALPSEQTWTATEAEDGK-LY-IGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDT  220 (781)
T ss_dssp             TT-T-EEEEESTTTCTTCSCCCEEEEEEEETTE-EE-EEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECT
T ss_pred             CC-C-eEEeeccCcccCCCccceEEEEECCCCC-EE-EEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcC
Confidence            75 2 2333321      234588888876654 33 4666657999998887654321          12344555555


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCeEEEEec-------CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEE---
Q 003842          648 HLGRYLAAAAENVVSILDAETQACRLSLQ-------GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH---  717 (792)
Q Consensus       648 ~~~~lla~s~dg~I~i~D~~t~~~~~~l~-------~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~---  717 (792)
                      + +.+.+++.+ .|.+||..+.+......       .....|.++..+.+|.+.+....+.|.+||..+........   
T Consensus       221 ~-g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f  298 (781)
T 3v9f_A          221 N-GNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRF  298 (781)
T ss_dssp             T-CCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------C
T ss_pred             C-CCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeecccc
Confidence            4 456666665 79999988765432211       12356999999888876654433589999987642211111   


Q ss_pred             ----Ee----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc----------cCCCeEEEEEeCCCCEE
Q 003842          718 ----EL----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA----------HEGLIAALAVSTETGYV  779 (792)
Q Consensus       718 ----~~----~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~----------h~~~V~sl~fspdg~~L  779 (792)
                          ..    ......|.++....+|. |.+|+.++.|..|+..+.....+..          ....|.+++...++.+.
T Consensus       299 ~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW  377 (781)
T 3v9f_A          299 EFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW  377 (781)
T ss_dssp             EEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE
T ss_pred             ccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE
Confidence                00    11345688888888886 7778878889999988766543321          23569999988887755


Q ss_pred             EEEeCCCcEEEeC
Q 003842          780 ASASHDKFVKLWK  792 (792)
Q Consensus       780 aSgs~DG~I~IWd  792 (792)
                      + |+.++-|.+||
T Consensus       378 i-gt~~~Gl~~~~  389 (781)
T 3v9f_A          378 I-GTDGGGINVFE  389 (781)
T ss_dssp             E-EEBSSCEEEEE
T ss_pred             E-EeCCCcEEEEE
Confidence            4 55555566553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.87  E-value=1e-06  Score=94.19  Aligned_cols=234  Identities=10%  Similarity=0.009  Sum_probs=145.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-------------------CCCCEEEEEECCCCCeEEEEe
Q 003842          513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------------------HSSLITDVRFSPSMPRLATSS  573 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-------------------h~~~V~~i~fspdg~~Lasgs  573 (792)
                      ....+++|+++|++++++..++.|..||..+++.......                   ....+..|++.++...|+++.
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            4567889999999888888899999999876544321110                   113578999997333555555


Q ss_pred             CCCcEEEEeCCCCCceeEEecc-----cCCCeEEEEEcC-CCCeEEEEEeC-----------------CCcEEEEEcCCC
Q 003842          574 FDKTVRVWDADNPGYSLRTFMG-----HSASVMSLDFHP-NKDDLICSCDG-----------------DGEIRYWSINNG  630 (792)
Q Consensus       574 ~Dg~V~IWdl~s~~~~i~~~~~-----h~~~V~sl~fsp-d~~~ll~sgs~-----------------Dg~I~iwdl~~~  630 (792)
                      ..+.|.++|..+ + .+..+..     .......+++.+ ++. ++++...                 ++.|..||..++
T Consensus        99 ~~~~i~~~d~~~-g-~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           99 CYYHLSVVGSEG-G-HATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             TTTEEEEECTTC-E-ECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             CCCCEEEEeCCC-C-EEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            555588888764 2 2222221     123578899999 875 4434322                 367999998877


Q ss_pred             eeEEEee--CCeeEEEEecCCCEEEEEEc-CCeEEEEECCCC---eEEEEecCCCCCeEEEEEcCCCCEEEEEeC-----
Q 003842          631 SCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSE-----  699 (792)
Q Consensus       631 ~~~~~~~--~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~---~~~~~l~~h~~~V~sv~~spdg~~Las~s~-----  699 (792)
                      +......  .....++++++++.++++.. .+.|.+||+...   ... .+....+ ...++++++|+++++...     
T Consensus       176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~  253 (322)
T 2fp8_A          176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGN  253 (322)
T ss_dssp             EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred             EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence            6543322  34567899999987777654 689999998752   211 1111223 788999999997777654     


Q ss_pred             -----C-eEEEEECCCCCCcceEEEeecCC----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003842          700 -----D-SVRVWTVGSGSEGECVHELSCNG----NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       700 -----d-~I~IwDl~s~~~~~~i~~~~~~~----~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~  756 (792)
                           . .|.++|.. +   +.+..+....    ..+..+++ .++..+++....+.|.++++....
T Consensus       254 ~~~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          254 MHGRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             TTSCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred             ccCCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence                 2 57777753 2   4444444332    34566666 344433333456788888876443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.85  E-value=1.9e-06  Score=91.58  Aligned_cols=230  Identities=11%  Similarity=0.042  Sum_probs=140.6

Q ss_pred             eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEe-CCC-cEE
Q 003842          546 SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDG-EIR  623 (792)
Q Consensus       546 ~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs-~Dg-~I~  623 (792)
                      .+..+... .....++|+++++++++...++.|..||.+.  .....+ .....+.+|++.+++. ++++.. .++ .|.
T Consensus        24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g--~~~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~~v~   98 (306)
T 2p4o_A           24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG--NQQIHA-TVEGKVSGLAFTSNGD-LVATGWNADSIPVV   98 (306)
T ss_dssp             EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC--CEEEEE-ECSSEEEEEEECTTSC-EEEEEECTTSCEEE
T ss_pred             EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC--ceEEEE-eCCCCceeEEEcCCCc-EEEEeccCCcceEE
Confidence            34444322 4578899999998777777889999999875  233222 2345688999999987 443433 332 477


Q ss_pred             EEEcCCCeeEEEeeC----CeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeE-EEEec---------CCCCCeEEEEEc
Q 003842          624 YWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAA-AENVVSILDAETQAC-RLSLQ---------GHTKPIDSVCWD  688 (792)
Q Consensus       624 iwdl~~~~~~~~~~~----~~~~v~~sp~~~~lla~s-~dg~I~i~D~~t~~~-~~~l~---------~h~~~V~sv~~s  688 (792)
                      .+|..+++.......    ....++..+ ++.++++. .++.|+++|..+++. +....         ..-.....|  +
T Consensus        99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s  175 (306)
T 2p4o_A           99 SLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K  175 (306)
T ss_dssp             EEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred             EEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence            778777776543321    112233333 45555555 488999999876532 22111         111234455  7


Q ss_pred             CCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEE---ccc
Q 003842          689 PSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL---TAH  763 (792)
Q Consensus       689 pdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~---~~h  763 (792)
                      +++++|+.+...  .|.+||+...........+.. ......+++.++|+++++....+.|.+||.. ++...+   ...
T Consensus       176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~  253 (306)
T 2p4o_A          176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG  253 (306)
T ss_dssp             EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT
T ss_pred             cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc
Confidence            888877666544  899999874111111111111 1345678999999876666667899999976 554322   222


Q ss_pred             CCCeEEEEEe---CCCCEEEEEeCC
Q 003842          764 EGLIAALAVS---TETGYVASASHD  785 (792)
Q Consensus       764 ~~~V~sl~fs---pdg~~LaSgs~D  785 (792)
                      ...+++++|.   ++++.|+.++..
T Consensus       254 ~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          254 VIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             cCCceEEEEecccCCCCEEEEECCC
Confidence            3568999998   888777766543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.84  E-value=3.4e-07  Score=94.38  Aligned_cols=181  Identities=11%  Similarity=0.083  Sum_probs=129.9

Q ss_pred             CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE
Q 003842          556 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV  635 (792)
Q Consensus       556 ~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~  635 (792)
                      ....|.|+ ++.++++.+.+|.|+++|+.+ ++.+..+.........+++  +++.+++....++.+.+||..+.+.+..
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~T-gkv~~~~l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLES-AQPVWMERLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSC-SSCSEEEECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCC-CcEEeEECCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            34678887 456677778888999999998 5555555222222234555  4567777777899999999999999999


Q ss_pred             eeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC--C---CCeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 003842          636 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH--T---KPIDSVCWDPSGELLASVSED-SVRVWTVGS  709 (792)
Q Consensus       636 ~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h--~---~~V~sv~~spdg~~Las~s~d-~I~IwDl~s  709 (792)
                      +........+.++++.|+++..++.|.++|.++.+.+.++...  .   ..++.+.|. +|++++....+ .|.+.|..+
T Consensus       132 i~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~T  210 (268)
T 3nok_A          132 TRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPAT  210 (268)
T ss_dssp             EECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTT
T ss_pred             EeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCC
Confidence            8765544555577888988888999999999999888877542  2   245667777 77666555444 999999988


Q ss_pred             CCCcceEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 003842          710 GSEGECVHELSC-------------NGNKFHSCVFHPTYPSLLVIGCY  744 (792)
Q Consensus       710 ~~~~~~i~~~~~-------------~~~~i~si~fspdg~~L~sgs~d  744 (792)
                      +   +.+..+..             .....+.|+|+|+++.|++.+..
T Consensus       211 G---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          211 G---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             C---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             C---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            7   44444332             22457899999988777776654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.84  E-value=1.6e-06  Score=92.63  Aligned_cols=230  Identities=9%  Similarity=0.013  Sum_probs=141.9

Q ss_pred             CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecc--------------------cCCCeEEEEEcCCCCeEEE
Q 003842          555 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--------------------HSASVMSLDFHPNKDDLIC  614 (792)
Q Consensus       555 ~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~--------------------h~~~V~sl~fspd~~~ll~  614 (792)
                      ....+++|.+++++|+++..++.|..||..+..  +..+..                    ....+.+|++.+++..++ 
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-   95 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG--FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-   95 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTC--EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCc--eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-
Confidence            345678899999888889899999999887522  222211                    113578999997334455 


Q ss_pred             EEeCCCcEEEEEcCCCeeEEEe---e----CCeeEEEEec-CCCEEEEEEc-----------------CCeEEEEECCCC
Q 003842          615 SCDGDGEIRYWSINNGSCTRVF---K----GGTAQMRFQP-HLGRYLAAAA-----------------ENVVSILDAETQ  669 (792)
Q Consensus       615 sgs~Dg~I~iwdl~~~~~~~~~---~----~~~~~v~~sp-~~~~lla~s~-----------------dg~I~i~D~~t~  669 (792)
                      .++..+.|..+|..++......   .    .....+++.+ ++..+++...                 ++.|..||..++
T Consensus        96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            4444555888887765432211   1    1245688888 7654444322                 367999998877


Q ss_pred             eEEEEecCCCCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc----
Q 003842          670 ACRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC----  743 (792)
Q Consensus       670 ~~~~~l~~h~~~V~sv~~spdg~~Las~s-~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~----  743 (792)
                      +....... ......|+|++++++|+.+. .+ .|.+|++....... ...+..... ...+++.++|+++++...    
T Consensus       176 ~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~  252 (322)
T 2fp8_A          176 ETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDG  252 (322)
T ss_dssp             EEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred             EEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence            64433221 12346799999999666554 43 89999987532111 111111223 788999999986665544    


Q ss_pred             ------CCeEEEEECCCCcEE-EEccc----CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          744 ------YQSLELWNMSENKTM-TLTAH----EGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       744 ------dg~I~IwDl~~~~~~-~~~~h----~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                            .+.|..+|.. ++.+ .+...    ...++++++ .++.++++...++.|.+++
T Consensus       253 ~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~  310 (322)
T 2fp8_A          253 NMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV  310 (322)
T ss_dssp             STTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred             cccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence                  3678888875 4444 33332    235777777 3565555555677777663

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.82  E-value=7.5e-06  Score=86.88  Aligned_cols=234  Identities=11%  Similarity=0.031  Sum_probs=144.0

Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC--cEE
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TVR  579 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg--~V~  579 (792)
                      .+.+..+... .....++|+++|+++++...++.|..||.+.. ....+. ....+..|+|.++++++++.....  .|.
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~   98 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV   98 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence            3445555433 56889999999997777768899999998753 333332 345689999999998666554332  366


Q ss_pred             EEeCCCCCceeEEec-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEe----------eC--CeeEEEE
Q 003842          580 VWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF----------KG--GTAQMRF  645 (792)
Q Consensus       580 IWdl~s~~~~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~----------~~--~~~~v~~  645 (792)
                      .+|..+ +....... ........+++.++ ..++++...++.|+++|...++. +...          ..  ....+  
T Consensus        99 ~~d~~~-g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--  174 (306)
T 2p4o_A           99 SLVKSD-GTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--  174 (306)
T ss_dssp             EEECTT-SCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred             EEcCCC-CeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence            667655 33222111 12233455565544 44555555688999999876532 1110          00  12223  


Q ss_pred             ecCCCEEEEEEc-CCeEEEEECCC-CeE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee
Q 003842          646 QPHLGRYLAAAA-ENVVSILDAET-QAC--RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS  720 (792)
Q Consensus       646 sp~~~~lla~s~-dg~I~i~D~~t-~~~--~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~  720 (792)
                      +++++.++++.. .+.|.+||+.. ++.  ...+.. ......++++++|+++++.... .|.+||.. +. ...+..+.
T Consensus       175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~-~~~~~~~~  251 (306)
T 2p4o_A          175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RS-TTIIAQAE  251 (306)
T ss_dssp             EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CC-EEEEECGG
T ss_pred             CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CC-EEEEeecc
Confidence            788887777665 67999999874 321  111111 1235678999999877666655 89999864 31 11132344


Q ss_pred             cCCCceEEEEEe---CCCCEEEEEEcCC
Q 003842          721 CNGNKFHSCVFH---PTYPSLLVIGCYQ  745 (792)
Q Consensus       721 ~~~~~i~si~fs---pdg~~L~sgs~dg  745 (792)
                      ......++|+|.   ++++.|++++..+
T Consensus       252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          252 QGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             cccCCceEEEEecccCCCCEEEEECCCC
Confidence            344568999998   8988888877653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.81  E-value=1.1e-07  Score=112.55  Aligned_cols=262  Identities=10%  Similarity=0.054  Sum_probs=153.5

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------eEEEEECCCCcee--EEec-cCCCCEEEEEECCCCCeEEEEeC-CCcEEE
Q 003842          517 CCHFSS-DGKLLATGGHDK-----------KAVLWHTDTLKSK--TNLE-EHSSLITDVRFSPSMPRLATSSF-DKTVRV  580 (792)
Q Consensus       517 ~lafsp-dg~~Lasgs~Dg-----------~I~vWdl~t~~~~--~~l~-~h~~~V~~i~fspdg~~Lasgs~-Dg~V~I  580 (792)
                      ++++.+ +|++++.|+.+.           .+.+||..+.+..  ..+. .+.....++++..+++++++|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            566777 888999887643           5889998876533  2232 23344556788899999999984 457999


Q ss_pred             EeCCCCCceeEEecc-c-CCCeEEEEEcCCCCeEEEEEe-CC-----CcEEEEEcCCCeeEEEee-------CCeeEEEE
Q 003842          581 WDADNPGYSLRTFMG-H-SASVMSLDFHPNKDDLICSCD-GD-----GEIRYWSINNGSCTRVFK-------GGTAQMRF  645 (792)
Q Consensus       581 Wdl~s~~~~i~~~~~-h-~~~V~sl~fspd~~~ll~sgs-~D-----g~I~iwdl~~~~~~~~~~-------~~~~~v~~  645 (792)
                      ||..+...  ..+.. + ...-.++++.++++ +++.|+ .+     ..+.+||..+.+....-.       .......+
T Consensus       270 yd~~t~~W--~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~  346 (656)
T 1k3i_A          270 YDSSSDSW--IPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY  346 (656)
T ss_dssp             EEGGGTEE--EECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred             ecCcCCce--eECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccccee
Confidence            99986321  12111 1 11223455566665 555666 34     579999998877554310       00000111


Q ss_pred             ecCCCEEEEEEcC---------CeEEEEECCCCeEEEEecCCC---------CCeEEEEEcC-CCCEEEEEeC-------
Q 003842          646 QPHLGRYLAAAAE---------NVVSILDAETQACRLSLQGHT---------KPIDSVCWDP-SGELLASVSE-------  699 (792)
Q Consensus       646 sp~~~~lla~s~d---------g~I~i~D~~t~~~~~~l~~h~---------~~V~sv~~sp-dg~~Las~s~-------  699 (792)
                      ..++..++.++.+         ..+..||..+.........+.         ..-.++.|.. +++++++|+.       
T Consensus       347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~  426 (656)
T 1k3i_A          347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD  426 (656)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred             ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence            2333334444433         467888988775443322221         1234455543 6777777763       


Q ss_pred             --C---eEEEEECCCCCCcceEEEe--ecCCC-ceEEEEEeCCCCEEEEEEcC-----------CeEEEEECCCCcEEEE
Q 003842          700 --D---SVRVWTVGSGSEGECVHEL--SCNGN-KFHSCVFHPTYPSLLVIGCY-----------QSLELWNMSENKTMTL  760 (792)
Q Consensus       700 --d---~I~IwDl~s~~~~~~i~~~--~~~~~-~i~si~fspdg~~L~sgs~d-----------g~I~IwDl~~~~~~~~  760 (792)
                        +   .|.+||..+..   .....  ..... ...++++.++++.+++|+.+           ..+.+||..+.+...+
T Consensus       427 ~~~~~~~v~~yd~~~~~---W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~  503 (656)
T 1k3i_A          427 ATTNAHIITLGEPGTSP---NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ  503 (656)
T ss_dssp             CCCCEEEEECCSTTSCC---EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred             cCCcceEEEcCCCCCCC---eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeec
Confidence              1   46677776542   21111  11122 23455677899999998864           4689999988775543


Q ss_pred             cc---cCCCeEEEEEeCCCCEEEEEeC
Q 003842          761 TA---HEGLIAALAVSTETGYVASASH  784 (792)
Q Consensus       761 ~~---h~~~V~sl~fspdg~~LaSgs~  784 (792)
                      ..   ......+..+.+|+++++.||.
T Consensus       504 ~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          504 NPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCCccccccHhhcCCCcEEEecCCC
Confidence            22   2223344556789999999885

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.78  E-value=6.8e-07  Score=105.86  Aligned_cols=254  Identities=13%  Similarity=0.163  Sum_probs=156.4

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccCCC-CEEEEEECC--CCCeEEEEeC------CCcEEEEeCCCCCceeEEec
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSP--SMPRLATSSF------DKTVRVWDADNPGYSLRTFM  594 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~-~V~~i~fsp--dg~~Lasgs~------Dg~V~IWdl~s~~~~i~~~~  594 (792)
                      +..|++++.|+.|+.+|.++|+.+..+..... ....+...|  .+..+++++.      +|.|+.||..+ ++.+..+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADT-GKLAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT-CCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCC-CcEEEEec
Confidence            45788888999999999999999877764210 000111111  1335555543      58999999998 55554443


Q ss_pred             cc--C-----------------------------CCeEEEEEcCCCCeEEEEEeCCC-------------------cEEE
Q 003842          595 GH--S-----------------------------ASVMSLDFHPNKDDLICSCDGDG-------------------EIRY  624 (792)
Q Consensus       595 ~h--~-----------------------------~~V~sl~fspd~~~ll~sgs~Dg-------------------~I~i  624 (792)
                      ..  .                             .....+++.++.+ +++.+..++                   .|..
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A  274 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILA  274 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            11  0                             0112467777755 455666555                   4999


Q ss_pred             EEcCCCeeEEEeeCC------------eeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEecCCCC---------
Q 003842          625 WSINNGSCTRVFKGG------------TAQMRFQPHLG---RYLAAAAENVVSILDAETQACRLSLQGHTK---------  680 (792)
Q Consensus       625 wdl~~~~~~~~~~~~------------~~~v~~sp~~~---~lla~s~dg~I~i~D~~t~~~~~~l~~h~~---------  680 (792)
                      +|.++++.+..+...            .....+..++.   .+++++.+|.++++|.++++.+..+.....         
T Consensus       275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~  354 (668)
T 1kv9_A          275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA  354 (668)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred             EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence            999999998877532            11122233543   477788899999999999998854432110         


Q ss_pred             ---C------------------------eEEEEEcCCCCEEEEEe-----------------------------------
Q 003842          681 ---P------------------------IDSVCWDPSGELLASVS-----------------------------------  698 (792)
Q Consensus       681 ---~------------------------V~sv~~spdg~~Las~s-----------------------------------  698 (792)
                         +                        -..++++|+..+++...                                   
T Consensus       355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~  434 (668)
T 1kv9_A          355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA  434 (668)
T ss_dssp             TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred             cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence               0                        01267778766655421                                   


Q ss_pred             -C-CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCC-eEEEEEeC
Q 003842          699 -E-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL-IAALAVST  774 (792)
Q Consensus       699 -~-d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~-V~sl~fsp  774 (792)
                       . +.|+.||+.++   +.+....... ......+...+.++++++.|+.|++||.++++.+ .+...... ..-+.+..
T Consensus       435 ~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~  510 (668)
T 1kv9_A          435 VVSGALLAWDPVKQ---KAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFEL  510 (668)
T ss_dssp             GCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             CccceEEEEeCCCC---cEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEE
Confidence             2 26888999887   4444443322 2333445557888999999999999999999988 33322211 12344455


Q ss_pred             CCC-EEEEEe
Q 003842          775 ETG-YVASAS  783 (792)
Q Consensus       775 dg~-~LaSgs  783 (792)
                      +|+ |++.++
T Consensus       511 ~G~~yva~~~  520 (668)
T 1kv9_A          511 AGRQYVAIMA  520 (668)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEEEEe
Confidence            666 444443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.78  E-value=1.7e-06  Score=88.28  Aligned_cols=191  Identities=16%  Similarity=0.135  Sum_probs=134.6

Q ss_pred             ceeEEeccCC--CCEEEEEECCCCCeEEEEeCC--CcEEEEeCCCCCceeEEecccCC-CeEEEEEcCCCCeEEEEEeCC
Q 003842          545 KSKTNLEEHS--SLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYSLRTFMGHSA-SVMSLDFHPNKDDLICSCDGD  619 (792)
Q Consensus       545 ~~~~~l~~h~--~~V~~i~fspdg~~Lasgs~D--g~V~IWdl~s~~~~i~~~~~h~~-~V~sl~fspd~~~ll~sgs~D  619 (792)
                      +.+.++ .|.  ...-.+.|+. +.++.+.+.+  ..|+++|+.+ ++.+..+.-... .-..+++.  ++.++...-.+
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~t-gkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~   84 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLET-GRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRN   84 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTT-CCEEEEEECCTTCCEEEEEEE--TTEEEEEESSS
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCC-CCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeC
Confidence            344445 343  4466889986 5555565654  4899999998 566655543222 22344444  56777777789


Q ss_pred             CcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC-----CCeEEEEEcCCCCEE
Q 003842          620 GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-----KPIDSVCWDPSGELL  694 (792)
Q Consensus       620 g~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~-----~~V~sv~~spdg~~L  694 (792)
                      +.+.+||..+.+.+..+........+.++++.++++..++.|.++|.++.+.+.++.-..     ..++.+.|. +|+++
T Consensus        85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly  163 (243)
T 3mbr_X           85 HEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL  163 (243)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             CEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence            999999999999999987655556666788888888889999999999998887776422     345667776 67666


Q ss_pred             EEEeCC-eEEEEECCCCCCcceEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 003842          695 ASVSED-SVRVWTVGSGSEGECVHELSC-------------NGNKFHSCVFHPTYPSLLVIGCY  744 (792)
Q Consensus       695 as~s~d-~I~IwDl~s~~~~~~i~~~~~-------------~~~~i~si~fspdg~~L~sgs~d  744 (792)
                      +..-.. .|.+.|..++   +.+..+..             .....+.|+|+|+++.|++.+..
T Consensus       164 anvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          164 ANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             EEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            555444 9999999888   44444431             22357899999998888887764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.77  E-value=1.8e-06  Score=100.50  Aligned_cols=261  Identities=10%  Similarity=0.029  Sum_probs=158.3

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEeccCCCCE---------EEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecc
Q 003842          525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLI---------TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG  595 (792)
Q Consensus       525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V---------~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~  595 (792)
                      ..|++++.++.|+.+|.++++.+-++.......         ..+++  .+..|++++.|+.|..+|..+ ++.+-.+..
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~T-G~~~W~~~~  145 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNT-GKVVWKKKF  145 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSS-CCEEEEEEC
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCC-CCEEeeecC
Confidence            356666664559999999999887776432210         11222  355788889999999999998 554444332


Q ss_pred             cC----CCeE-EEEEcC---CCCeEEEEEe------CCCcEEEEEcCCCeeEEEeeCCe---------------------
Q 003842          596 HS----ASVM-SLDFHP---NKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGT---------------------  640 (792)
Q Consensus       596 h~----~~V~-sl~fsp---d~~~ll~sgs------~Dg~I~iwdl~~~~~~~~~~~~~---------------------  640 (792)
                      ..    ..+. ...+..   ++..++++++      .++.|+.+|.++++.+..+....                     
T Consensus       146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~  225 (582)
T 1flg_A          146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS  225 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred             CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence            21    0111 111111   1222444554      37899999999999887654310                     


Q ss_pred             -----------------------eEEEEecCCCEEEEEEc--------------------C----CeEEEEECCCCeEEE
Q 003842          641 -----------------------AQMRFQPHLGRYLAAAA--------------------E----NVVSILDAETQACRL  673 (792)
Q Consensus       641 -----------------------~~v~~sp~~~~lla~s~--------------------d----g~I~i~D~~t~~~~~  673 (792)
                                             ..+++.+..+.++++..                    |    +.|..+|.++++.+.
T Consensus       226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W  305 (582)
T 1flg_A          226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW  305 (582)
T ss_dssp             SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred             CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence                                   12456667788887774                    2    589999999999998


Q ss_pred             EecC--CC--------CCeEEEEEc-CCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeecCC-------------C-
Q 003842          674 SLQG--HT--------KPIDSVCWD-PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG-------------N-  724 (792)
Q Consensus       674 ~l~~--h~--------~~V~sv~~s-pdg~---~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~-------------~-  724 (792)
                      .+..  |.        .++. +... .+|+   +|+.++.+ .++++|..+++   .+..+....             . 
T Consensus       306 ~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p  381 (582)
T 1flg_A          306 FYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK---LQNAFPFVDNITWASHIDLKTGRP  381 (582)
T ss_dssp             EEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSSCCCSEEEECTTTCCE
T ss_pred             EEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC---EecccccccCccccccccccCCCE
Confidence            8753  32        1221 2222 4674   67777777 99999998874   332222111             0 


Q ss_pred             -------------------c------------eEEEEEeCCCCEEEEEE-------------------------------
Q 003842          725 -------------------K------------FHSCVFHPTYPSLLVIG-------------------------------  742 (792)
Q Consensus       725 -------------------~------------i~si~fspdg~~L~sgs-------------------------------  742 (792)
                                         .            ...++++|+...+++..                               
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~  461 (582)
T 1flg_A          382 VEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMY  461 (582)
T ss_dssp             EECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESC
T ss_pred             eEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCC
Confidence                               0            01345666655555543                               


Q ss_pred             --cCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          743 --CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       743 --~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                        .+|.|..||+.+++.+-...+...+..-.+...+.+|+.++.||.|+.||
T Consensus       462 ~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D  513 (582)
T 1flg_A          462 DDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFD  513 (582)
T ss_dssp             SSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred             CCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence              25789999999999873322222333222233466788899999999886

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.77  E-value=8e-07  Score=91.53  Aligned_cols=196  Identities=15%  Similarity=0.166  Sum_probs=133.6

Q ss_pred             cceeeeeeeecCCCC--eEEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeEEeccCCCC-EEEEEECCCCCeEEEEe-
Q 003842          500 FSFKEANSVRASTSK--VICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSS-  573 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~--V~~lafspdg~~Lasgs~Dg--~I~vWdl~t~~~~~~l~~h~~~-V~~i~fspdg~~Lasgs-  573 (792)
                      ..++.+.++ .|...  .-.+.|+ ++.++.+.+.+|  .|+++|+++++.+..+...... -..|++  ++..|+.+. 
T Consensus        29 ~~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw  104 (262)
T 3nol_A           29 YDYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTW  104 (262)
T ss_dssp             EEEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEES
T ss_pred             cceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEe
Confidence            344555666 44433  3678998 676667777666  8999999999999888654322 123444  344555554 


Q ss_pred             CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC--------eeEEEE
Q 003842          574 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--------TAQMRF  645 (792)
Q Consensus       574 ~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~--------~~~v~~  645 (792)
                      .++.+.+||..+ .+.+.++.... .-..++  +++..++++- .++.|.++|..+.+.+..+...        .+.+.|
T Consensus       105 ~~~~v~v~D~~t-~~~~~ti~~~~-eG~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~  179 (262)
T 3nol_A          105 KNGLGFVWNIRN-LRQVRSFNYDG-EGWGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW  179 (262)
T ss_dssp             SSSEEEEEETTT-CCEEEEEECSS-CCCCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE
T ss_pred             eCCEEEEEECcc-CcEEEEEECCC-CceEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE
Confidence            588999999998 66677666432 223444  5667677554 4788999999999888776431        233566


Q ss_pred             ecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCC------------CCCeEEEEEcCCCCEEEEEeCCeEEEEE
Q 003842          646 QPHLGRYLAAAA-ENVVSILDAETQACRLSLQGH------------TKPIDSVCWDPSGELLASVSEDSVRVWT  706 (792)
Q Consensus       646 sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h------------~~~V~sv~~spdg~~Las~s~d~I~IwD  706 (792)
                      .  ++++++... ++.|.+.|.++++++..+...            ....+.|+|+|+++.|++.+..-=++|.
T Consensus       180 ~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~e  251 (262)
T 3nol_A          180 V--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFE  251 (262)
T ss_dssp             E--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             E--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEE
Confidence            5  456776664 789999999999998887642            1346889999999988888876333443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.74  E-value=3.5e-05  Score=82.30  Aligned_cols=226  Identities=8%  Similarity=-0.050  Sum_probs=144.4

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEE-EeCCCcEEEEeCCCC---CceeEEecccCCCeE
Q 003842          526 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKTVRVWDADNP---GYSLRTFMGHSASVM  601 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Las-gs~Dg~V~IWdl~s~---~~~i~~~~~h~~~V~  601 (792)
                      +|+.+. ...|+..|+++.+....+. ....+..++|++.+..|+. -..++.|..++++..   ......+........
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            344443 3568999998876655554 3456889999986655554 455688999998751   122222322234567


Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcC--CeEEEEECCCCeEEEEec
Q 003842          602 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE--NVVSILDAETQACRLSLQ  676 (792)
Q Consensus       602 sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~d--g~I~i~D~~t~~~~~~l~  676 (792)
                      .|++.+.+..++++-..++.|.++|+........+.   .....+++.|.+++++.+...  +.|..+++..........
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~  160 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  160 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence            899987777787777778999999987654433333   245678999988888777653  689999886543332223


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 003842          677 GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS  753 (792)
Q Consensus       677 ~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~  753 (792)
                      ..-.....|+|++++..|+.+...  .|..+|+... ....+............+++.  +..|+++. ..+.|..+|..
T Consensus       161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~  237 (316)
T 1ijq_A          161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL  237 (316)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred             CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCC
Confidence            334567899999987777666544  8999998742 223332222223346677774  34555554 45689999876


Q ss_pred             CCc
Q 003842          754 ENK  756 (792)
Q Consensus       754 ~~~  756 (792)
                      +++
T Consensus       238 ~g~  240 (316)
T 1ijq_A          238 TGS  240 (316)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.73  E-value=1.4e-06  Score=101.16  Aligned_cols=250  Identities=10%  Similarity=0.053  Sum_probs=151.2

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccCC----CCEEE-EEECCCCCeEEEEeC------CCcEEEEeCCCCCceeEE
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITD-VRFSPSMPRLATSSF------DKTVRVWDADNPGYSLRT  592 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~----~~V~~-i~fspdg~~Lasgs~------Dg~V~IWdl~s~~~~i~~  592 (792)
                      +..|++++.|+.|+.+|.++++.+-.+....    ..+.+ .... ++ .+++++.      ++.|+.+|..+ ++.+..
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~  191 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKT-GELKWR  191 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTT-CCEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCC-CcEEEE
Confidence            4578888889999999999999887765321    01111 1111 33 5566554      79999999998 454444


Q ss_pred             ecccCCC-------------------------------------e-EEEEEcCCCCeEEEEEeCC---------------
Q 003842          593 FMGHSAS-------------------------------------V-MSLDFHPNKDDLICSCDGD---------------  619 (792)
Q Consensus       593 ~~~h~~~-------------------------------------V-~sl~fspd~~~ll~sgs~D---------------  619 (792)
                      +......                                     + ..+++.+....++ .+..+               
T Consensus       192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy-~~~g~~~~~~~~~~~gd~~y  270 (571)
T 2ad6_A          192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFY-YGSGNPAPWNETMRPGDNKW  270 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTT
T ss_pred             EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEE-EECCCCccccCCccCCCcee
Confidence            3321100                                     0 1355666555444 44321               


Q ss_pred             -CcEEEEEcCCCeeEEEeeCC---------eeE-EEE--ecCCC---EEEEEEcCCeEEEEECCCCeEEEEecCCC----
Q 003842          620 -GEIRYWSINNGSCTRVFKGG---------TAQ-MRF--QPHLG---RYLAAAAENVVSILDAETQACRLSLQGHT----  679 (792)
Q Consensus       620 -g~I~iwdl~~~~~~~~~~~~---------~~~-v~~--sp~~~---~lla~s~dg~I~i~D~~t~~~~~~l~~h~----  679 (792)
                       +.|..+|.++++.+..+...         ... +.+  ..+++   .+++++.+|.++++|.++++.+..+....    
T Consensus       271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w  350 (571)
T 2ad6_A          271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV  350 (571)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence             35999999999988776532         111 222  23553   35567779999999999999887764321    


Q ss_pred             ---------CCe--------------------------EEEEEcCCCCEEEEEe--------------------------
Q 003842          680 ---------KPI--------------------------DSVCWDPSGELLASVS--------------------------  698 (792)
Q Consensus       680 ---------~~V--------------------------~sv~~spdg~~Las~s--------------------------  698 (792)
                               .++                          ..++|+|+..+|++.+                          
T Consensus       351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  430 (571)
T 2ad6_A          351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence                     111                          2357888777666543                          


Q ss_pred             -----------CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccC-
Q 003842          699 -----------ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE-  764 (792)
Q Consensus       699 -----------~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~-  764 (792)
                                 .+ .|..||+.++   +.+..+.... .+....+...+..+++++.|+.|++||.++++++ .+.... 
T Consensus       431 ~~~~~~~~~~~~~g~l~a~D~~tG---~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~  506 (571)
T 2ad6_A          431 MYPGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG  506 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTTC---CEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             eccCccccCCCCCCeEEEEECCCC---CEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCC
Confidence                       23 7888888776   3444433222 2222333445667888999999999999999988 333221 


Q ss_pred             CCeEEEEEeCCCCEEEE
Q 003842          765 GLIAALAVSTETGYVAS  781 (792)
Q Consensus       765 ~~V~sl~fspdg~~LaS  781 (792)
                      .....+.+..+|+.++.
T Consensus       507 ~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          507 GIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             CCSCCEEEEETTEEEEE
T ss_pred             cEeeeEEEEECCEEEEE
Confidence            11222345567765443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.72  E-value=1.3e-05  Score=86.98  Aligned_cols=237  Identities=10%  Similarity=0.002  Sum_probs=151.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCCCce
Q 003842          511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYS  589 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~V~IWdl~s~~~~  589 (792)
                      +.+..+|.+..++. +|+.+. ...|+..+++.......+. ....+..++|++....|+.+ ...+.|+.++++.. ..
T Consensus        32 ~~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~-~~  107 (349)
T 3v64_C           32 RPDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS-NV  107 (349)
T ss_dssp             CTTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SC
T ss_pred             CCCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCC-Cc
Confidence            34556677776644 444443 4568888887665544444 34458899999766555544 56788999998863 32


Q ss_pred             eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc-C-CeEEEE
Q 003842          590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA-E-NVVSIL  664 (792)
Q Consensus       590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~-d-g~I~i~  664 (792)
                      ...+.........|++.+.+..++++-...+.|.++++........+.   .....+++.|.++.++.+.. . +.|..+
T Consensus       108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~  187 (349)
T 3v64_C          108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS  187 (349)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence            233332334567899988777788787778899999987654333333   24567899998888777665 3 789999


Q ss_pred             ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003842          665 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG  742 (792)
Q Consensus       665 D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs  742 (792)
                      +++.......+...-.....|+|++++..|+.+...  .|..+|+.... ...  .+.........+++. . ..|+++.
T Consensus       188 ~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~-~~~--~~~~~~~~P~giav~-~-~~ly~td  262 (349)
T 3v64_C          188 SMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKA--VISQGLPHPFAITVF-E-DSLYWTD  262 (349)
T ss_dssp             ETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE--EECSSCSSEEEEEEE-T-TEEEEEE
T ss_pred             eCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc-eEE--EEeCCCCCceEEEEE-C-CEEEEec
Confidence            887543333223334457899999877766666554  89999986432 121  222234456777773 3 3455554


Q ss_pred             -cCCeEEEEECCCCc
Q 003842          743 -CYQSLELWNMSENK  756 (792)
Q Consensus       743 -~dg~I~IwDl~~~~  756 (792)
                       ..+.|..+|..+++
T Consensus       263 ~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          263 WHTKSINSANKFTGK  277 (349)
T ss_dssp             TTTTEEEEEETTTCC
T ss_pred             CCCCeEEEEEccCCC
Confidence             45688888855544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.67  E-value=4.2e-06  Score=85.40  Aligned_cols=191  Identities=12%  Similarity=0.085  Sum_probs=129.8

Q ss_pred             cceeeeeeeecCCCC--eEEEEEcCCCCEEEEEeCC--CeEEEEECCCCceeEEeccCCCC-EEEEEECCCCCeEEEEeC
Q 003842          500 FSFKEANSVRASTSK--VICCHFSSDGKLLATGGHD--KKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSSF  574 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~--V~~lafspdg~~Lasgs~D--g~I~vWdl~t~~~~~~l~~h~~~-V~~i~fspdg~~Lasgs~  574 (792)
                      ..++.+..+ .|...  +-.+.|+. +.++.+.+.+  ..|+++|+++++.+..+...... -..+++. ++++++..-.
T Consensus         7 ~~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~   83 (243)
T 3mbr_X            7 QGYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWR   83 (243)
T ss_dssp             CCEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESS
T ss_pred             cceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEee
Confidence            345556666 45433  55889986 5555565654  48999999999999887643322 1234443 2334444556


Q ss_pred             CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--------CeeEEEEe
Q 003842          575 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQ  646 (792)
Q Consensus       575 Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------~~~~v~~s  646 (792)
                      ++.+.+||..+ .+.+.++.... .-..++  +++..++++ ..++.|.++|..+.+.++.+.-        ..+.+.+.
T Consensus        84 ~~~v~v~D~~t-l~~~~ti~~~~-~Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~  158 (243)
T 3mbr_X           84 NHEGFVYDLAT-LTPRARFRYPG-EGWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV  158 (243)
T ss_dssp             SSEEEEEETTT-TEEEEEEECSS-CCCEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             CCEEEEEECCc-CcEEEEEeCCC-CceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe
Confidence            88999999988 66677766433 223554  556667755 4588999999999988877653        22334444


Q ss_pred             cCCCEEEEEE-cCCeEEEEECCCCeEEEEecCC-------------CCCeEEEEEcCCCCEEEEEeCC
Q 003842          647 PHLGRYLAAA-AENVVSILDAETQACRLSLQGH-------------TKPIDSVCWDPSGELLASVSED  700 (792)
Q Consensus       647 p~~~~lla~s-~dg~I~i~D~~t~~~~~~l~~h-------------~~~V~sv~~spdg~~Las~s~d  700 (792)
                        ++++++.. .++.|.+.|.++++++..+...             ..-.+.|+|+|+++.|++.+..
T Consensus       159 --~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          159 --NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             --TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             --CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence              56677666 4789999999999998877521             1246889999998888777766

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.66  E-value=1.3e-05  Score=88.18  Aligned_cols=235  Identities=10%  Similarity=-0.004  Sum_probs=150.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEE-EEeCCCcEEEEeCCCCCceeE
Q 003842          513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLR  591 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~La-sgs~Dg~V~IWdl~s~~~~i~  591 (792)
                      +...|.+..+++ +|+.+. ...|+.++++.......+. ....+..++|.+.+..|+ +-...+.|+.|+++. .....
T Consensus        77 d~~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g-~~~~~  152 (386)
T 3v65_B           77 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNG-SNVEE  152 (386)
T ss_dssp             TSSCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CCEEE
T ss_pred             CCCeECCccccc-eeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCC-CCcEE
Confidence            344566666643 444443 4678888988765544444 345688999997655555 445678899999876 33223


Q ss_pred             EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc-C-CeEEEEEC
Q 003842          592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA-E-NVVSILDA  666 (792)
Q Consensus       592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~-d-g~I~i~D~  666 (792)
                      .+.........|++.+.+..++++-...+.|.++++........+.   .....+++.|.++.++.+.. . +.|..+++
T Consensus       153 ~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~  232 (386)
T 3v65_B          153 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  232 (386)
T ss_dssp             EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence            3333334556788988777788777778889999887554333333   23567899998888877765 3 68999998


Q ss_pred             CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-c
Q 003842          667 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-C  743 (792)
Q Consensus       667 ~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~  743 (792)
                      ............-.....|+|++++..|+.+...  .|..+|+....   ....+.........+++. .+ .|+++. .
T Consensus       233 dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~-~ly~td~~  307 (386)
T 3v65_B          233 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-ED-SLYWTDWH  307 (386)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TT-EEEEEETT
T ss_pred             CCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CC-EEEEeeCC
Confidence            7654433333334557899999877766666544  89999986431   111222234456777773 33 455444 4


Q ss_pred             CCeEEEEECCCCc
Q 003842          744 YQSLELWNMSENK  756 (792)
Q Consensus       744 dg~I~IwDl~~~~  756 (792)
                      .+.|..+|..+++
T Consensus       308 ~~~V~~~~~~~G~  320 (386)
T 3v65_B          308 TKSINSANKFTGK  320 (386)
T ss_dssp             TTEEEEEETTTCC
T ss_pred             CCeEEEEECCCCc
Confidence            5688888865554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.64  E-value=1.3e-06  Score=105.06  Aligned_cols=238  Identities=9%  Similarity=0.064  Sum_probs=134.7

Q ss_pred             CeEEEEEc-CCCCEEEEEeC-CC----eEEEEECCCC-ceeE-EeccCCCCEEEEEECCCCCeEEEEeCC-----CcEEE
Q 003842          514 KVICCHFS-SDGKLLATGGH-DK----KAVLWHTDTL-KSKT-NLEEHSSLITDVRFSPSMPRLATSSFD-----KTVRV  580 (792)
Q Consensus       514 ~V~~lafs-pdg~~Lasgs~-Dg----~I~vWdl~t~-~~~~-~l~~h~~~V~~i~fspdg~~Lasgs~D-----g~V~I  580 (792)
                      .+...+|| |||++||.+.. +|    .|+++|++++ +.+. .+..   ....++|+||++.|+....|     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            67889999 99998887643 22    4999999998 6321 1211   13468999999988877765     25888


Q ss_pred             EeCCCCCce-eEEec-ccCCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCC--ee-EEEeeCCeeEEEEecC---CC
Q 003842          581 WDADNPGYS-LRTFM-GHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNG--SC-TRVFKGGTAQMRFQPH---LG  650 (792)
Q Consensus       581 Wdl~s~~~~-i~~~~-~h~~~V~sl~fspd~~~ll~sgs~--Dg~I~iwdl~~~--~~-~~~~~~~~~~v~~sp~---~~  650 (792)
                      |++.++... ...+. ........+.|+||++.++++...  ...|+++|+.++  .. +..+........|+++   ++
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence            888763221 22322 233456788999999988877643  346888898875  22 1333221122223333   67


Q ss_pred             EEEEEEcC-----CeEEEEECCCCeEEEE-ecCCCC--CeEEEEEcCCCCEE-EEEeCC---eEEEEEC-------CCCC
Q 003842          651 RYLAAAAE-----NVVSILDAETQACRLS-LQGHTK--PIDSVCWDPSGELL-ASVSED---SVRVWTV-------GSGS  711 (792)
Q Consensus       651 ~lla~s~d-----g~I~i~D~~t~~~~~~-l~~h~~--~V~sv~~spdg~~L-as~s~d---~I~IwDl-------~s~~  711 (792)
                      .|+..+..     ..|.++|+.+...... +..+..  .+..+.+.  ++.| ++...+   .|.++|+       ..+.
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~  409 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGT  409 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTTT
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCCc
Confidence            76666543     3788888875211111 222333  34455554  4444 444444   5777776       2221


Q ss_pred             CcceEEEeecCC-CceEEEEE----eCCCCE-EEEEEcC---CeEEEEECCCCcEEE
Q 003842          712 EGECVHELSCNG-NKFHSCVF----HPTYPS-LLVIGCY---QSLELWNMSENKTMT  759 (792)
Q Consensus       712 ~~~~i~~~~~~~-~~i~si~f----spdg~~-L~sgs~d---g~I~IwDl~~~~~~~  759 (792)
                         .+..+.... ..+..+.+    ++++.. +++.+..   ..|+.+|+.+++...
T Consensus       410 ---~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~  463 (751)
T 2xe4_A          410 ---GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTA  463 (751)
T ss_dssp             ---CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEE
T ss_pred             ---cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEE
Confidence               022222111 12233322    345554 4444433   368888888776543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.64  E-value=3.7e-06  Score=97.76  Aligned_cols=253  Identities=12%  Similarity=0.057  Sum_probs=150.3

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccCCC----CEE---EEEEC-CCCC-eEEEEe------CCCcEEEEeCCCCCc
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS----LIT---DVRFS-PSMP-RLATSS------FDKTVRVWDADNPGY  588 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~----~V~---~i~fs-pdg~-~Lasgs------~Dg~V~IWdl~s~~~  588 (792)
                      +..|++++.|+.|+.+|.++|+.+-.+.....    .+.   .+.=. .+++ .|++++      .++.|+.+|..+ ++
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t-G~  195 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT-GE  195 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT-CC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC-CC
Confidence            45788888999999999999998877653221    111   11111 1233 566655      378999999988 44


Q ss_pred             eeEEecccCCCe-----------------------------------------EEEEEcCCCCeEEEEEe----------
Q 003842          589 SLRTFMGHSASV-----------------------------------------MSLDFHPNKDDLICSCD----------  617 (792)
Q Consensus       589 ~i~~~~~h~~~V-----------------------------------------~sl~fspd~~~ll~sgs----------  617 (792)
                      .+-........+                                         ..+++.+....+++..+          
T Consensus       196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            443332110000                                         12455566554443332          


Q ss_pred             --C-------C----CcEEEEEcCCCeeEEEeeCC---------e-eEEEEe---cCCC---EEEEEEcCCeEEEEECCC
Q 003842          618 --G-------D----GEIRYWSINNGSCTRVFKGG---------T-AQMRFQ---PHLG---RYLAAAAENVVSILDAET  668 (792)
Q Consensus       618 --~-------D----g~I~iwdl~~~~~~~~~~~~---------~-~~v~~s---p~~~---~lla~s~dg~I~i~D~~t  668 (792)
                        .       |    +.|..+|.++++.+..+...         . ..+.+.   .+++   .+++++.+|.|+++|.++
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence              1       2    68999999999998877531         1 112222   3453   566778899999999999


Q ss_pred             CeEEEEecCCCC--C-------------------------------------------eEEEEEcCCCCEEEEEe-----
Q 003842          669 QACRLSLQGHTK--P-------------------------------------------IDSVCWDPSGELLASVS-----  698 (792)
Q Consensus       669 ~~~~~~l~~h~~--~-------------------------------------------V~sv~~spdg~~Las~s-----  698 (792)
                      ++.+..+.....  .                                           -..++++|+..++++..     
T Consensus       356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~  435 (582)
T 1flg_A          356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE  435 (582)
T ss_dssp             CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred             CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence            998876654310  0                                           01345666555444432     


Q ss_pred             ----------------------------CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003842          699 ----------------------------ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL  749 (792)
Q Consensus       699 ----------------------------~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~I  749 (792)
                                                  .+ .|..||+.++   +.+....... .+....+...+..+++++.|+.|+.
T Consensus       436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A  511 (582)
T 1flg_A          436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG---KVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKA  511 (582)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC---CEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEE
T ss_pred             eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC---CEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEE
Confidence                                        13 6888888877   3443333221 2222222235667888999999999


Q ss_pred             EECCCCcEEEEcccCCCeE--EEEEeCCCC-EEEE
Q 003842          750 WNMSENKTMTLTAHEGLIA--ALAVSTETG-YVAS  781 (792)
Q Consensus       750 wDl~~~~~~~~~~h~~~V~--sl~fspdg~-~LaS  781 (792)
                      ||.++++.+........+.  -+.|..+|+ ||++
T Consensus       512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~  546 (582)
T 1flg_A          512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             EECCCCCEEEEecCCCCcccCceEEEECCEEEEEE
Confidence            9999999883322222222  366667887 4443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.62  E-value=6.1e-06  Score=85.00  Aligned_cols=176  Identities=10%  Similarity=0.038  Sum_probs=123.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC-CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003842          515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF  593 (792)
Q Consensus       515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~-~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~  593 (792)
                      ...+.|+ ++.++++.+.+|.|+++|+++++.+..+ -... .-..+++.. +++++..-.++.+.+||..+ .+.+.++
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~T-l~~~~ti  132 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMP-PQRERTT  132 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTT-TEEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCc-CcEEEEE
Confidence            4678887 4566777778889999999999998887 3222 123456543 23444455688999999998 6667776


Q ss_pred             cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--------CeeEEEEecCCCEEEEEEc-CCeEEEE
Q 003842          594 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPHLGRYLAAAA-ENVVSIL  664 (792)
Q Consensus       594 ~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------~~~~v~~sp~~~~lla~s~-dg~I~i~  664 (792)
                      ... ..-..++  +++..++++ ..++.|.++|..+.+.+..+.-        ..+.+.|.  ++++++... ++.|.+.
T Consensus       133 ~~~-~eGwGLt--~Dg~~L~vS-dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vI  206 (268)
T 3nok_A          133 RYS-GEGWGLC--YWNGKLVRS-DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEI  206 (268)
T ss_dssp             ECS-SCCCCEE--EETTEEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEE
T ss_pred             eCC-CceeEEe--cCCCEEEEE-CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEE
Confidence            643 2224555  456666655 4589999999999998877653        22345555  446776664 7899999


Q ss_pred             ECCCCeEEEEecCC-------------CCCeEEEEEcCCCCEEEEEeCC
Q 003842          665 DAETQACRLSLQGH-------------TKPIDSVCWDPSGELLASVSED  700 (792)
Q Consensus       665 D~~t~~~~~~l~~h-------------~~~V~sv~~spdg~~Las~s~d  700 (792)
                      |.++++++..+...             ..-.+.|+|+|+++.|++.+..
T Consensus       207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            99999998877532             1356889999987766666655

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.62  E-value=3.8e-06  Score=97.80  Aligned_cols=248  Identities=13%  Similarity=0.088  Sum_probs=147.5

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEeccCC----CCEEE-EEECCCCCeEEEEe------CCCcEEEEeCCCCCceeEEec
Q 003842          526 LLATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITD-VRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRTFM  594 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~----~~V~~-i~fspdg~~Lasgs------~Dg~V~IWdl~s~~~~i~~~~  594 (792)
                      +|++++.|+.|+.+|.++|+.+-......    ..+++ ..+ .++ .|++++      .+|.|+.||..+ ++.+-.+.
T Consensus       123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~T-G~~~W~~~  199 (599)
T 1w6s_A          123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKT-GEQVWRAY  199 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTT-CCEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCC-CcEEEEEc
Confidence            38888899999999999999887654322    01111 111 134 555555      389999999998 45444433


Q ss_pred             ccCCC-------------------------------------e-EEEEEcCCCCeEEEEEeCC----------------C
Q 003842          595 GHSAS-------------------------------------V-MSLDFHPNKDDLICSCDGD----------------G  620 (792)
Q Consensus       595 ~h~~~-------------------------------------V-~sl~fspd~~~ll~sgs~D----------------g  620 (792)
                      .....                                     + ..+++.+... +++.+..+                +
T Consensus       200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~  278 (599)
T 1w6s_A          200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTM  278 (599)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred             CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCccccc
Confidence            21110                                     0 1345555555 44455444                4


Q ss_pred             cEEEEEcCCCeeEEEeeCCe----------eEEEEe---cCC---CEEEEEEcCCeEEEEECCCCeEEEEecCCC-----
Q 003842          621 EIRYWSINNGSCTRVFKGGT----------AQMRFQ---PHL---GRYLAAAAENVVSILDAETQACRLSLQGHT-----  679 (792)
Q Consensus       621 ~I~iwdl~~~~~~~~~~~~~----------~~v~~s---p~~---~~lla~s~dg~I~i~D~~t~~~~~~l~~h~-----  679 (792)
                      .|..+|.++++.+..+....          ..+.+.   .++   ..++.++.+|.|+++|.++++.+.......     
T Consensus       279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~  358 (599)
T 1w6s_A          279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF  358 (599)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             eEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccc
Confidence            89999999999987775421          112222   345   245557789999999999999887654211     


Q ss_pred             --------CCe--------------------------EEEEEcCCCCEEEEEe---------------------------
Q 003842          680 --------KPI--------------------------DSVCWDPSGELLASVS---------------------------  698 (792)
Q Consensus       680 --------~~V--------------------------~sv~~spdg~~Las~s---------------------------  698 (792)
                              .++                          ..++|+|+..+|++..                           
T Consensus       359 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  438 (599)
T 1w6s_A          359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM  438 (599)
T ss_dssp             EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             cccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccccee
Confidence                    111                          2356777766655432                           


Q ss_pred             ------------CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccC
Q 003842          699 ------------ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE  764 (792)
Q Consensus       699 ------------~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~  764 (792)
                                  .. .|..||+.++   +.+...... .....-.+...+..+++++.|+.|+.||.++++++ .+....
T Consensus       439 ~~~p~~~~~~~~~~G~l~A~D~~tG---~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~  514 (599)
T 1w6s_A          439 YPGPKGDRQNYEGLGQIKAYNAITG---DYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS  514 (599)
T ss_dssp             EECTTSBTTTTBCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ccCCcCCcccCCCcCeEEEEECCCC---CEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCC
Confidence                        12 5677777666   333333211 11111123335677888999999999999999988 333222


Q ss_pred             -CCeEEEEEeCCCC-EEEE
Q 003842          765 -GLIAALAVSTETG-YVAS  781 (792)
Q Consensus       765 -~~V~sl~fspdg~-~LaS  781 (792)
                       ....-+.|..+|+ ||++
T Consensus       515 g~~~~P~~y~~~G~qyv~~  533 (599)
T 1w6s_A          515 GAIGYPMTYTHKGTQYVAI  533 (599)
T ss_dssp             CCCSCCEEEEETTEEEEEE
T ss_pred             CcEeccEEEEeCCEEEEEE
Confidence             2222355566776 4444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.57  E-value=7.5e-05  Score=82.60  Aligned_cols=226  Identities=8%  Similarity=-0.054  Sum_probs=147.8

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCCC---ceeEEecccCCCeE
Q 003842          526 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPG---YSLRTFMGHSASVM  601 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~V~IWdl~s~~---~~i~~~~~h~~~V~  601 (792)
                      +|+.+. ...|+..+++.......+ .....+..|+|++.+..|+.+ ...+.|+.++++...   .....+........
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            444443 468999998876554444 345678999999866655555 456789999987421   12233333445678


Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEec
Q 003842          602 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQ  676 (792)
Q Consensus       602 sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~--dg~I~i~D~~t~~~~~~l~  676 (792)
                      .|++.+.+..|+++-...+.|.+.+++.......+..   ....+++.|.+++++.+..  .+.|..+++........+.
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~  242 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  242 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence            8999887777887877788999999986654444442   3567899998888887764  3789999987654444344


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 003842          677 GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS  753 (792)
Q Consensus       677 ~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~  753 (792)
                      ..-.....|++++++..|+.+...  .|..+|+... ....+............+++  ++..|+... ..+.|..+|..
T Consensus       243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~~~V~~~~~~  319 (400)
T 3p5b_L          243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRL  319 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEE--ETTEEEEEESSSCSEEEEESS
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEE--eCCEEEEecCCCCeEEEEEcC
Confidence            344567899999988777766654  8999998643 22233222222334556666  344555554 44689889866


Q ss_pred             CCc
Q 003842          754 ENK  756 (792)
Q Consensus       754 ~~~  756 (792)
                      +++
T Consensus       320 ~G~  322 (400)
T 3p5b_L          320 TGS  322 (400)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.56  E-value=1.5e-05  Score=89.11  Aligned_cols=231  Identities=10%  Similarity=0.059  Sum_probs=137.3

Q ss_pred             CEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC----cEEEEEcCCC
Q 003842          556 LITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNG  630 (792)
Q Consensus       556 ~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg----~I~iwdl~~~  630 (792)
                      ....|+|+| ++..|+++...+.|+++|++.  ..+..+.........|+|+++++.++++...++    .+.+++. .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~--~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK--EYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTT--TEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCC--CEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            457889998 456677766668899999875  334444445566889999999887776665333    2333443 23


Q ss_pred             eeE--EEe--eCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCC--eE
Q 003842          631 SCT--RVF--KGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED--SV  702 (792)
Q Consensus       631 ~~~--~~~--~~~~~~v~~sp~~~~lla~s-~dg~I~i~D~~t~~~~~~l~-~h~~~V~sv~~spdg~~Las~s~d--~I  702 (792)
                      ...  ..+  ......++++|+.+.++++. .++.|..||...+....... ........|+|+|+|++|+.+...  .|
T Consensus       215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            221  222  23456788999656666555 57899999998776522222 122456789999999966665544  88


Q ss_pred             EEEECCCCC-CcceEEEeecC---------------CCceE-EEEEe--------CCCCEEEEEE-cCCeEEEEECCCCc
Q 003842          703 RVWTVGSGS-EGECVHELSCN---------------GNKFH-SCVFH--------PTYPSLLVIG-CYQSLELWNMSENK  756 (792)
Q Consensus       703 ~IwDl~s~~-~~~~i~~~~~~---------------~~~i~-si~fs--------pdg~~L~sgs-~dg~I~IwDl~~~~  756 (792)
                      .+|+..... ....+..+.+.               -.... .+++.        +++. |+++. ..+.|+.++ .++.
T Consensus       295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~-~~G~  372 (430)
T 3tc9_A          295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILT-PQGR  372 (430)
T ss_dssp             EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEEC-TTSE
T ss_pred             EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEEC-CCCc
Confidence            888765321 00011111111               01123 45553        2344 55554 456899998 4555


Q ss_pred             EEEEccc------------------CCCeEEEEEeCC-CCEEEEEeCCCcEEEe
Q 003842          757 TMTLTAH------------------EGLIAALAVSTE-TGYVASASHDKFVKLW  791 (792)
Q Consensus       757 ~~~~~~h------------------~~~V~sl~fspd-g~~LaSgs~DG~I~IW  791 (792)
                      ...+.+.                  -.....|+++++ +.++++-...+.|+.+
T Consensus       373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i  426 (430)
T 3tc9_A          373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI  426 (430)
T ss_dssp             EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence            5544332                  125789999995 5444444445677765

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.52  E-value=0.00012  Score=78.56  Aligned_cols=266  Identities=10%  Similarity=0.017  Sum_probs=147.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec----cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG  587 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~----~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~  587 (792)
                      ...+.+|.|..++..+|+ +.+|.|. +..+.++.-..+.    .....+.+|.|.+ + .+++++.++.|+.  ....+
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~--S~DgG  108 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH--TTDGG  108 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE--ESSTT
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE--ECCCC
Confidence            447999999888877775 4577653 3344443322221    2345689999976 3 4444556664433  33334


Q ss_pred             ceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----eCCeeEEEEecCCCEEEEEEcCCe
Q 003842          588 YSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRYLAAAAENV  660 (792)
Q Consensus       588 ~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~sp~~~~lla~s~dg~  660 (792)
                      .......   .+...+..|.+.+++ .+++++ .+|.|+. ....++.-...    ...+..+.+.+++..+ +++.++.
T Consensus       109 ~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~-~~g~~G~  184 (327)
T 2xbg_A          109 QSWSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYV-AVSSRGS  184 (327)
T ss_dssp             SSCEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEE-EEETTSS
T ss_pred             CCceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEE-EEECCCc
Confidence            4333332   233567888877664 455444 4565432 22223322222    2345667788875544 5555555


Q ss_pred             EEEE-EC--CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEe-ecCCCceEEEEEeCCCC
Q 003842          661 VSIL-DA--ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYP  736 (792)
Q Consensus       661 I~i~-D~--~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~-~~~~~~i~si~fspdg~  736 (792)
                      |+.- |.  .+.+.+.  ......+..+.+.+++.+++++..+.+++++...+.....+..- ......+..+++.+++.
T Consensus       185 ~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~  262 (327)
T 2xbg_A          185 FYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE  262 (327)
T ss_dssp             EEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC
T ss_pred             EEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE
Confidence            5443 42  3334432  23456788999999998776665557666642212111111100 01223578888988776


Q ss_pred             EEEEEEcCCeEEEEECCCCcEEE-Ec---ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          737 SLLVIGCYQSLELWNMSENKTMT-LT---AHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       737 ~L~sgs~dg~I~IwDl~~~~~~~-~~---~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .++ ++.++.| ++..+.++... +.   .....+.++.|.+++ .+++++.+|.|..++
T Consensus       263 ~~~-~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          263 VWL-AGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV  319 (327)
T ss_dssp             EEE-EESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred             EEE-EeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence            544 4556767 45556565443 22   134568889997555 466677899887664

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.51  E-value=0.00021  Score=73.68  Aligned_cols=200  Identities=10%  Similarity=0.055  Sum_probs=135.5

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeEEecc-CCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          506 NSVRASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~La-sgs~Dg~I~vWdl~t~~~~~~l~~-h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      +.+.+-.+.+..++|+|+++.|+ +...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            45667777899999999876554 57778899999998 888877742 2356889999998877677667788999998


Q ss_pred             CCCCc--eeEEec------ccCCCeEEEEEcCCCCeEEEEEeCCC-cEEEEEc-CCCeeEEEe----------eCCeeEE
Q 003842          584 DNPGY--SLRTFM------GHSASVMSLDFHPNKDDLICSCDGDG-EIRYWSI-NNGSCTRVF----------KGGTAQM  643 (792)
Q Consensus       584 ~s~~~--~i~~~~------~h~~~V~sl~fspd~~~ll~sgs~Dg-~I~iwdl-~~~~~~~~~----------~~~~~~v  643 (792)
                      ...+.  .+....      ........|+|.|.+..++++...+. .|+.|+- .....+..+          ......+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            76553  122221      23445689999999888887665554 4555551 011112222          1245789


Q ss_pred             EEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCC---------CCeEEEEEcCCCCEEEEEeCCeEEEEEC
Q 003842          644 RFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSEDSVRVWTV  707 (792)
Q Consensus       644 ~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~sv~~spdg~~Las~s~d~I~IwDl  707 (792)
                      +++|..+.+++.+. ...|.++|.... .+..+.-..         ..-..|+|+++|++++++-.+.+++|.-
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence            99999988887776 568888887644 444433221         2457899999999666644446666643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.51  E-value=0.00016  Score=78.38  Aligned_cols=226  Identities=9%  Similarity=0.033  Sum_probs=142.6

Q ss_pred             EEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee
Q 003842          558 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK  637 (792)
Q Consensus       558 ~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~  637 (792)
                      +|.+..++ .+|+.+.. ..|+..+++. .. ...+......+..++|++.+..++++-...+.|+.+++........+.
T Consensus        37 ~C~~~~~~-~~ll~~~~-~~I~~i~~~g-~~-~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  112 (349)
T 3v64_C           37 SCKALGPE-PVLLFANR-IDIRQVLPHR-SE-YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  112 (349)
T ss_dssp             CEEESSSC-CEEEEECB-SCEEEECTTS-CC-EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             cccccccC-ceeEeecc-cceEEEeCCC-Ce-eEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence            34444443 34444433 4488888865 22 333333445588999998878888777778999999998765444433


Q ss_pred             C---CeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCC
Q 003842          638 G---GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSG  710 (792)
Q Consensus       638 ~---~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~  710 (792)
                      .   ....+++.+.++.|+.+.. .+.|.+++++.......+.........|+++|.+.+|+....+   .|..+++...
T Consensus       113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~  192 (349)
T 3v64_C          113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS  192 (349)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence            2   3467889887777766655 6799999987654443343344567899999976655555433   6777777542


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEE-EcccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003842          711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFV  788 (792)
Q Consensus       711 ~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~-~~~h~~~V~sl~fspdg~~LaSgs~DG~I  788 (792)
                      .   ....+.........++|++++..|+++... +.|..+|+....... +........+|++. ++.++++-...+.|
T Consensus       193 ~---~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V  268 (349)
T 3v64_C          193 G---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI  268 (349)
T ss_dssp             S---CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred             C---cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeE
Confidence            1   111112234457899999988888877654 689999988654443 33334567788883 34344443345555


Q ss_pred             EEe
Q 003842          789 KLW  791 (792)
Q Consensus       789 ~IW  791 (792)
                      ..+
T Consensus       269 ~~~  271 (349)
T 3v64_C          269 NSA  271 (349)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.51  E-value=9.3e-05  Score=81.39  Aligned_cols=225  Identities=9%  Similarity=0.028  Sum_probs=143.9

Q ss_pred             EEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC
Q 003842          559 DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG  638 (792)
Q Consensus       559 ~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~  638 (792)
                      |.+..+ ..+|+.+.. ..|+.+++.. .. +..+......+..++|++.+..++++-...+.|+.|++........+..
T Consensus        81 C~~~~~-~~~l~~~~~-~~I~~i~~~~-~~-~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  156 (386)
T 3v65_B           81 CKALGP-EPVLLFANR-IDIRQVLPHR-SE-YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  156 (386)
T ss_dssp             EEECSS-CCEEEEECB-SCEEEECTTS-CC-CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred             ECCccc-cceeEeecC-ccceeeccCC-Cc-EEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence            334444 234444433 4588888875 22 2333334456889999988788887877789999999987665444432


Q ss_pred             ---CeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCC
Q 003842          639 ---GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGS  711 (792)
Q Consensus       639 ---~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~~  711 (792)
                         ....+++.+.++.|+.+.. .+.|.+++++.......+.........|+++|.+.+|+....+   .|..+++....
T Consensus       157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~  236 (386)
T 3v65_B          157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG  236 (386)
T ss_dssp             SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence               3456888887777766655 6789999987654444444444567899999977766655433   67777775421


Q ss_pred             CcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEE-EcccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003842          712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFVK  789 (792)
Q Consensus       712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~-~~~h~~~V~sl~fspdg~~LaSgs~DG~I~  789 (792)
                         ..............++|++++..|+++... +.|+.+|+....... +........+|++. ++.++++-...+.|.
T Consensus       237 ---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~  312 (386)
T 3v65_B          237 ---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSIN  312 (386)
T ss_dssp             ---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred             ---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEE
Confidence               111222334457899999988888877654 689999987654443 33334567788883 344444444456665


Q ss_pred             Ee
Q 003842          790 LW  791 (792)
Q Consensus       790 IW  791 (792)
                      .+
T Consensus       313 ~~  314 (386)
T 3v65_B          313 SA  314 (386)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.51  E-value=0.00022  Score=75.95  Aligned_cols=217  Identities=11%  Similarity=0.004  Sum_probs=137.3

Q ss_pred             eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC----CeeEEEee---CCe
Q 003842          568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----GSCTRVFK---GGT  640 (792)
Q Consensus       568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~----~~~~~~~~---~~~  640 (792)
                      +|+.+.. ..|+..|++.. .....+ .....+.+++|++.+..++++-..++.|..+++..    ......+.   ...
T Consensus         3 ~ll~~~~-~~I~~i~~~~~-~~~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p   79 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRS-EYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (316)
T ss_dssp             EEEEECB-SSEEEEETTSC-CCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEECC-CeEEEEECCCc-ceEehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence            3444444 45899999863 333333 34456889999998788887877789999999886    22222232   245


Q ss_pred             eEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC---CeEEEEECCCCCCcceE
Q 003842          641 AQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---DSVRVWTVGSGSEGECV  716 (792)
Q Consensus       641 ~~v~~sp~~~~lla~s-~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~---d~I~IwDl~s~~~~~~i  716 (792)
                      ..+++.+.++.++.+. ..+.|.++|.+.......+.........++++|.+.+|+.+..   ..|..+++... ....+
T Consensus        80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~  158 (316)
T 1ijq_A           80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSL  158 (316)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEE
T ss_pred             CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEE
Confidence            6788887777776664 4789999998865544444433456789999996665554443   26777777432 11111


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEEc---ccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          717 HELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLT---AHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       717 ~~~~~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~~~---~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                        ..........+++++++..|+++... +.|..+|+.......+.   .......+|++. .+.++++-...+.|..+
T Consensus       159 --~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~  234 (316)
T 1ijq_A          159 --VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA  234 (316)
T ss_dssp             --ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             --EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence              12234567899999988888877754 59999999865443332   123456788885 34444444445666654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.51  E-value=7.6e-05  Score=79.84  Aligned_cols=219  Identities=9%  Similarity=-0.023  Sum_probs=139.6

Q ss_pred             CCeEEEEECCCCc-eeEEeccCCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCC
Q 003842          533 DKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD  610 (792)
Q Consensus       533 Dg~I~vWdl~t~~-~~~~l~~h~~~V~~i~fspdg~~L-asgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~  610 (792)
                      ...|+.+|++... ....+......+..|+|.+.+..| ++-...+.|..++++........+...-.....+++.+.+.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            4678999998764 122222223457789999855544 55556788999998764222222222334567889988777


Q ss_pred             eEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEecCCCCCeEEE
Q 003842          611 DLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSV  685 (792)
Q Consensus       611 ~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~--dg~I~i~D~~t~~~~~~l~~h~~~V~sv  685 (792)
                      .++++-...+.|.++++........+.   .....+++.|.++.++.+..  .+.|..++++.......+...-..-..|
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl  171 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL  171 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence            788777778899999987544333332   23567899998888887774  5789999887543332233333456899


Q ss_pred             EEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCc
Q 003842          686 CWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENK  756 (792)
Q Consensus       686 ~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~~~~  756 (792)
                      +|++++..|+.+...  .|..+|+... ....+.  .........+++..  ..|+... ..+.|..+|..+++
T Consensus       172 avd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~--~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          172 TLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVV--KGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE--CSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred             EEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEe--cCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCC
Confidence            999977776666554  8999998643 222222  22344566777753  3455444 44689999986654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.51  E-value=3.7e-05  Score=79.36  Aligned_cols=197  Identities=11%  Similarity=0.164  Sum_probs=128.8

Q ss_pred             EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003842          592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAE  667 (792)
Q Consensus       592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~  667 (792)
                      .+.+-...+..|+|+|+++.|+++...++.|...|+. ++.++.+.    .....+++..++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4445667899999999988898888889999999998 88877764    245668888776544444457789999876


Q ss_pred             CCe---EEEEec------CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC---CCCcceEEE--e--ecCCCceEEEE
Q 003842          668 TQA---CRLSLQ------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS---GSEGECVHE--L--SCNGNKFHSCV  730 (792)
Q Consensus       668 t~~---~~~~l~------~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s---~~~~~~i~~--~--~~~~~~i~si~  730 (792)
                      ...   .+....      ........|+|++.+..|+++.+. ...||.+..   ......+..  +  ......+..++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            543   222221      134457899999998766666654 444444431   111111111  0  11234578999


Q ss_pred             EeCCCCEEEEEEcC-CeEEEEECCCCcEE-E--Ecc-c------CCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          731 FHPTYPSLLVIGCY-QSLELWNMSENKTM-T--LTA-H------EGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       731 fspdg~~L~sgs~d-g~I~IwDl~~~~~~-~--~~~-h------~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ++|....|++.+.. +.|.++|.... .+ .  +.. .      -.....|+|.++|+++++ ++-+.+++|
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF  249 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence            99977766666655 58899997755 44 2  221 1      125689999999985554 677766665

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.47  E-value=0.00026  Score=79.09  Aligned_cols=232  Identities=12%  Similarity=0.103  Sum_probs=136.8

Q ss_pred             CEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCC---C-cEEEEEcCC
Q 003842          556 LITDVRFSPS--MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---G-EIRYWSINN  629 (792)
Q Consensus       556 ~V~~i~fspd--g~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D---g-~I~iwdl~~  629 (792)
                      ....|+|+++  ...|+++...+.|+.+|+.+ + .+..+........+|+|+++++ ++++....   . .+..++...
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~-g-~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN-Q-YVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTT-T-EEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCC-C-EEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            4678999984  44566665558899999875 3 3444444556689999999988 66554321   1 233333322


Q ss_pred             Cee-EEEe--eCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEe-cC-CCCCeEEEEEcCCCCEEEEEeCC--e
Q 003842          630 GSC-TRVF--KGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSL-QG-HTKPIDSVCWDPSGELLASVSED--S  701 (792)
Q Consensus       630 ~~~-~~~~--~~~~~~v~~sp~~~~lla~s-~dg~I~i~D~~t~~~~~~l-~~-h~~~V~sv~~spdg~~Las~s~d--~  701 (792)
                      +.. ...+  ......+++.+..+.|+++. .++.|+.+|..++.....+ .. ....-..|+|+|++++|+.+...  .
T Consensus       217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            111 0111  13345688899556666555 4678999999877652222 21 22233579999999966665544  8


Q ss_pred             EEEEECCCC-CCcceEEEeecC---------------CCceEEEEE---------eCCCCEEEEEEcCCeEEEEECCCCc
Q 003842          702 VRVWTVGSG-SEGECVHELSCN---------------GNKFHSCVF---------HPTYPSLLVIGCYQSLELWNMSENK  756 (792)
Q Consensus       702 I~IwDl~s~-~~~~~i~~~~~~---------------~~~i~si~f---------spdg~~L~sgs~dg~I~IwDl~~~~  756 (792)
                      |+.+++... ........+.+.               -.....+++         .+++.++++-...+.|+.++. ++.
T Consensus       297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~  375 (433)
T 4hw6_A          297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR  375 (433)
T ss_dssp             EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred             EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence            999887531 111111111111               123567888         556654444445578999985 555


Q ss_pred             EEEEccc------------------CCCeEEEEEe-CCCCEEEEEeCCCcEEEe
Q 003842          757 TMTLTAH------------------EGLIAALAVS-TETGYVASASHDKFVKLW  791 (792)
Q Consensus       757 ~~~~~~h------------------~~~V~sl~fs-pdg~~LaSgs~DG~I~IW  791 (792)
                      ..++.+.                  -.....|+++ +++.++++-...++|+.+
T Consensus       376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i  429 (433)
T 4hw6_A          376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI  429 (433)
T ss_dssp             EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence            5544332                  1237789999 566555554456777765

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.45  E-value=4.8e-05  Score=85.04  Aligned_cols=234  Identities=10%  Similarity=0.096  Sum_probs=141.5

Q ss_pred             CCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC-C----cEEEEeCCCC
Q 003842          513 SKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-K----TVRVWDADNP  586 (792)
Q Consensus       513 ~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D-g----~V~IWdl~s~  586 (792)
                      .....|+|+| ++..|+++...+.|+++|++++...... ........|+|++++++|+++... +    .+.+++....
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~  215 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG  215 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence            3568899998 4556666665588999999876654443 355668999999999966666542 2    2444444321


Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC----CeeEEEEecCCCEEEEEEc-CCeE
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAA-ENVV  661 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~~~~lla~s~-dg~I  661 (792)
                      ......+. .......++++|++.+++++-..++.|+.|+...+.....+..    ....++|++++++++++.. .+.|
T Consensus       216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            11112222 2334568889995566776776788999999987765333321    3567999999996666654 6789


Q ss_pred             EEEECCC--CeE--EEEecCC---C------------CCeE-EEEEc--------CCCCEEEEEeCC-eEEEEECCCCCC
Q 003842          662 SILDAET--QAC--RLSLQGH---T------------KPID-SVCWD--------PSGELLASVSED-SVRVWTVGSGSE  712 (792)
Q Consensus       662 ~i~D~~t--~~~--~~~l~~h---~------------~~V~-sv~~s--------pdg~~Las~s~d-~I~IwDl~s~~~  712 (792)
                      ..++.+.  ++.  +..+.+.   .            ..-. .+++.        ++|.++++-..+ .|+.++. .+  
T Consensus       295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G--  371 (430)
T 3tc9_A          295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG--  371 (430)
T ss_dssp             EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS--
T ss_pred             EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC--
Confidence            9987653  221  1111111   0            1122 45553        345555555444 8888883 22  


Q ss_pred             cceEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003842          713 GECVHELSCN------------------GNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS  753 (792)
Q Consensus       713 ~~~i~~~~~~------------------~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~  753 (792)
                        .+..+.+.                  -.....+++.+++..|+++.. .+.|+.++++
T Consensus       372 --~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          372 --RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             --EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             --cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence              22222211                  124788999996555555554 4578887764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.40  E-value=5.8e-05  Score=84.43  Aligned_cols=233  Identities=10%  Similarity=0.033  Sum_probs=139.9

Q ss_pred             CCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC-----cEEEEeCCC
Q 003842          513 SKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-----TVRVWDADN  585 (792)
Q Consensus       513 ~~V~~lafspd--g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg-----~V~IWdl~s  585 (792)
                      ....+|+|+++  +..|+++...+.|+.+|..++.....+ ........|+|+++++ |+++...+     .+..++...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            34678999985  445555554489999999877655443 4556689999999999 54444321     233333332


Q ss_pred             CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-EEeeC----CeeEEEEecCCCEEEEEEc-CC
Q 003842          586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFKG----GTAQMRFQPHLGRYLAAAA-EN  659 (792)
Q Consensus       586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~-~~~~~----~~~~v~~sp~~~~lla~s~-dg  659 (792)
                      .......+. .......+++++++..++++-..++.|+.+|..++... ..+..    ....++|++++++|+++.. .+
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence            111111221 23445678899955566656666788999999877662 22221    1235999999997766665 67


Q ss_pred             eEEEEECC--CCeE--EEEecCC---------------CCCeEEEEE---------cCCCCEEEEEeCC-eEEEEECCCC
Q 003842          660 VVSILDAE--TQAC--RLSLQGH---------------TKPIDSVCW---------DPSGELLASVSED-SVRVWTVGSG  710 (792)
Q Consensus       660 ~I~i~D~~--t~~~--~~~l~~h---------------~~~V~sv~~---------spdg~~Las~s~d-~I~IwDl~s~  710 (792)
                      .|+.+|..  ++..  ...+.+.               -.....+++         ..+|.++++-..+ .|+.++. ++
T Consensus       296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G  374 (433)
T 4hw6_A          296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG  374 (433)
T ss_dssp             EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred             EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence            99998865  2321  1111111               123556888         6777777666666 8988884 22


Q ss_pred             CCcceEEEeecC------------------CCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 003842          711 SEGECVHELSCN------------------GNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS  753 (792)
Q Consensus       711 ~~~~~i~~~~~~------------------~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~  753 (792)
                          .+..+.+.                  -.....+++.|....|+++. ..+.|+.++++
T Consensus       375 ----~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          375 ----RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             ----EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ----CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence                22222221                  12367788884433455544 44577777764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.39  E-value=0.00032  Score=84.09  Aligned_cols=238  Identities=8%  Similarity=-0.039  Sum_probs=151.1

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCCCCC---ce
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPG---YS  589 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~L-asgs~Dg~V~IWdl~s~~---~~  589 (792)
                      .-+|.++.... +|+.+ ....|+..++........+. ....+..|+|.+....| ++-...+.|+.++++...   ..
T Consensus       386 ~~~C~~~~~~p-~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~  462 (791)
T 3m0c_C          386 TKACKAVGSIA-YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY  462 (791)
T ss_dssp             CCCCEETTSCC-EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred             Cceeeeccccc-ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce
Confidence            33444443332 44443 34568888887665544443 45678899999855554 455556789999987521   22


Q ss_pred             eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEc-C-CeEEEE
Q 003842          590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA-E-NVVSIL  664 (792)
Q Consensus       590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~-d-g~I~i~  664 (792)
                      ...+.........|++.+.+.+|+++-...+.|.+.++........+..   ....|++.|..++|+.+.. . +.|.+.
T Consensus       463 ~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~  542 (791)
T 3m0c_C          463 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  542 (791)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             eEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence            2333334456678999888888888888889999999986554444432   3567999999888888764 2 689999


Q ss_pred             ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003842          665 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG  742 (792)
Q Consensus       665 D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs  742 (792)
                      ++........+...-.....|++++.+..|+.+...  .|.++++.... ...+......-.....|++  .+.+|+++.
T Consensus       543 ~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~-~~~v~~~~~~l~~P~glav--~~~~lYwtD  619 (791)
T 3m0c_C          543 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAV--FEDKVFWTD  619 (791)
T ss_dssp             ETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEE--ETTEEEEEE
T ss_pred             ecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc-eEEEecCCCccCCCCEEEE--eCCEEEEEE
Confidence            987665555554444678899999877776666554  89999986432 2222221112223455665  344666666


Q ss_pred             cC-CeEEEEECCCCcE
Q 003842          743 CY-QSLELWNMSENKT  757 (792)
Q Consensus       743 ~d-g~I~IwDl~~~~~  757 (792)
                      .. +.|...|..+++.
T Consensus       620 ~~~~~I~~~dk~tG~~  635 (791)
T 3m0c_C          620 IINEAIFSANRLTGSD  635 (791)
T ss_dssp             TTTTEEEEEETTTCCC
T ss_pred             CCCCEEEEEeCCCCcc
Confidence            54 6888888766643

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.38  E-value=0.00039  Score=76.79  Aligned_cols=217  Identities=11%  Similarity=0.025  Sum_probs=138.9

Q ss_pred             eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC----eeEEEee---CCe
Q 003842          568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVFK---GGT  640 (792)
Q Consensus       568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~~---~~~  640 (792)
                      +|+.+. ...|+..+++...  ...+......+..|+|++.+..++++-...+.|+.+++...    .....+.   ...
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~--~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSE--YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCS--CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             eeEEec-cceeEEEccCCcc--eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            444443 4668888887632  23333455678899999987888877777889999998752    2223333   245


Q ss_pred             eEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC---CeEEEEECCCCCCcceE
Q 003842          641 AQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---DSVRVWTVGSGSEGECV  716 (792)
Q Consensus       641 ~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~---d~I~IwDl~s~~~~~~i  716 (792)
                      ..+++.+.++.|+.+.. .+.|.++|++.......+.........|+++|.+.+|+....   ..|...++....   ..
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~  238 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY  238 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CE
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cE
Confidence            66888887777766654 679999999876655555444456789999997666555542   278888875431   11


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEEcc---cCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          717 HELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTA---HEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       717 ~~~~~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~~~~---h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ..+...-.....+++++++..|+++... +.|+.+|++......+..   ......+|++. .+.++++-...+.|..+
T Consensus       239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~  316 (400)
T 3p5b_L          239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA  316 (400)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEE
T ss_pred             EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEE
Confidence            1222333567899999988888888654 689999998765443322   23445677773 33344444445666554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.37  E-value=0.00026  Score=75.68  Aligned_cols=219  Identities=9%  Similarity=0.006  Sum_probs=137.9

Q ss_pred             eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-EEee---CCeeEE
Q 003842          568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFK---GGTAQM  643 (792)
Q Consensus       568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~-~~~~---~~~~~v  643 (792)
                      +|+.+. ...|+.+|++...............+.+++|++.+..++++-...+.|..+++...... ..+.   .....+
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl   84 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL   84 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence            344443 45699999986432222222223456789999877778878777889999998866321 1221   245668


Q ss_pred             EEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC--C-eEEEEECCCCCCcceEEEe
Q 003842          644 RFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGECVHEL  719 (792)
Q Consensus       644 ~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~--d-~I~IwDl~s~~~~~~i~~~  719 (792)
                      ++.+.++.++.+.. .+.|.+++++.......+.........|+++|.+.+|+.+..  . .|..+++... ....+  +
T Consensus        85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~--~  161 (318)
T 3sov_A           85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFII--I  161 (318)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEE--E
T ss_pred             EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEE--E
Confidence            88887777766654 679999998765433333344456789999987665555542  3 7888887532 11111  2


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEE-cccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          720 SCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTL-TAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       720 ~~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~~-~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ...-.....++|++++..|+.+... +.|+.+|+.......+ ........++++..+ .++++-...+.|..+
T Consensus       162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~  234 (318)
T 3sov_A          162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILAC  234 (318)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEE
T ss_pred             ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEE
Confidence            2233457899999988888887654 6899999986544433 334455677877533 344443345556544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.35  E-value=3e-05  Score=93.00  Aligned_cols=190  Identities=14%  Similarity=0.151  Sum_probs=118.4

Q ss_pred             CeEEEEEc-CCCCeEEEEEeCCC----cEEEEEcCCC-eeEE-EeeCCeeEEEEecCCCEEEEEEcC-----CeEEEEEC
Q 003842          599 SVMSLDFH-PNKDDLICSCDGDG----EIRYWSINNG-SCTR-VFKGGTAQMRFQPHLGRYLAAAAE-----NVVSILDA  666 (792)
Q Consensus       599 ~V~sl~fs-pd~~~ll~sgs~Dg----~I~iwdl~~~-~~~~-~~~~~~~~v~~sp~~~~lla~s~d-----g~I~i~D~  666 (792)
                      .+..++|+ |||+.++++.+.+|    .|+++|+.++ +.+. .+......+.|+|+++.|+.+..+     ..|+++++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l  254 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM  254 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence            57789999 99998887777655    4999999998 6322 122234568899999998888765     26888898


Q ss_pred             CCCe--EEEEec-CCCCCeEEEEEcCCCCEEEEEeC---C-eEEEEECCCCCCcce-EEEe-ecCCCceEEEEEeCCCCE
Q 003842          667 ETQA--CRLSLQ-GHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGEC-VHEL-SCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       667 ~t~~--~~~~l~-~h~~~V~sv~~spdg~~Las~s~---d-~I~IwDl~s~~~~~~-i~~~-~~~~~~i~si~fspdg~~  737 (792)
                      .++.  .+..+. ........+.|+|||++|+..+.   . .|+++|+.++.. .. +..+ ........++.|+. ++.
T Consensus       255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~~~~~l~~~~~~~~~s~~~~~-g~~  332 (751)
T 2xe4_A          255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HNTLEIVRPREKGVRYDVQMHG-TSH  332 (751)
T ss_dssp             TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-CCCEEESSCCCTTCCEEEEEET-TTE
T ss_pred             CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-CceeEEeecCCCCceEEEeeee-CCE
Confidence            7753  122222 23345678899999998876552   2 789999976521 12 1222 22334445555544 555


Q ss_pred             EEEEEcC-----CeEEEEECCC-CcEEE-EcccCC--CeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          738 LLVIGCY-----QSLELWNMSE-NKTMT-LTAHEG--LIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       738 L~sgs~d-----g~I~IwDl~~-~~~~~-~~~h~~--~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      |+..+..     ..|+++|+.+ +.... +..+..  .+..+.+. .+.++++...||..+||
T Consensus       333 l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          333 LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred             EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence            5555433     2788888875 23223 344443  34555554 33455666677876654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.31  E-value=0.00014  Score=77.93  Aligned_cols=183  Identities=17%  Similarity=0.237  Sum_probs=124.6

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCC----CC---eEEEEe-C--CCcEEEEeCCCCCceeEE
Q 003842          523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS----MP---RLATSS-F--DKTVRVWDADNPGYSLRT  592 (792)
Q Consensus       523 dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspd----g~---~Lasgs-~--Dg~V~IWdl~s~~~~i~~  592 (792)
                      ...+++.....+-+.|||+ +++.+..+..  +.++.|..-|+    ++   ++++.. .  +++|++|+++.....+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3446666667789999999 8888888864  56777776663    22   223333 3  578999988532334555


Q ss_pred             ecc------cC-CCeEEEEE--cCC-CCeEEEEEeCCCcEEEEEcC-------CCeeEEEee--CCeeEEEEecCCCEEE
Q 003842          593 FMG------HS-ASVMSLDF--HPN-KDDLICSCDGDGEIRYWSIN-------NGSCTRVFK--GGTAQMRFQPHLGRYL  653 (792)
Q Consensus       593 ~~~------h~-~~V~sl~f--spd-~~~ll~sgs~Dg~I~iwdl~-------~~~~~~~~~--~~~~~v~~sp~~~~ll  653 (792)
                      +..      .. ..+..+|+  ++. +..++++..++|.+..|++.       +.+.++.|.  .....+.+.+..+.|+
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY  195 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence            522      11 56777888  664 44567788889999999983       335566665  3456688888899999


Q ss_pred             EEEcCCeEEEEECC-----CCeEEEEec-CC-CCCeEEEEE--cCCCC-EEEEEeCC--eEEEEECC
Q 003842          654 AAAAENVVSILDAE-----TQACRLSLQ-GH-TKPIDSVCW--DPSGE-LLASVSED--SVRVWTVG  708 (792)
Q Consensus       654 a~s~dg~I~i~D~~-----t~~~~~~l~-~h-~~~V~sv~~--spdg~-~Las~s~d--~I~IwDl~  708 (792)
                      ++-.+..|..||.+     +++.+..+. ++ ...+..|++  .++++ ||++.+.+  .+.+||..
T Consensus       196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            99999888888865     345665553 22 236888887  45555 66666644  99999996

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.25  E-value=3.3e-05  Score=91.22  Aligned_cols=226  Identities=7%  Similarity=0.006  Sum_probs=127.4

Q ss_pred             EEEECC-CCCeEEEEeCCC-----------cEEEEeCCCCCce-eEEec-ccCCCeEEEEEcCCCCeEEEEEe-CCCcEE
Q 003842          559 DVRFSP-SMPRLATSSFDK-----------TVRVWDADNPGYS-LRTFM-GHSASVMSLDFHPNKDDLICSCD-GDGEIR  623 (792)
Q Consensus       559 ~i~fsp-dg~~Lasgs~Dg-----------~V~IWdl~s~~~~-i~~~~-~h~~~V~sl~fspd~~~ll~sgs-~Dg~I~  623 (792)
                      .+++.+ ++++++.|+.+.           .+.+||..+.... +..+. .+.....++++..++. +++.|+ .+..+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceE
Confidence            456666 888888887643           5889999874422 22221 2333444577777765 555666 456899


Q ss_pred             EEEcCCCeeEEEee--C--CeeEEEEecCCCEEEEEE-cC-----CeEEEEECCCCeEEEEe----cCCCCCeEEEEEcC
Q 003842          624 YWSINNGSCTRVFK--G--GTAQMRFQPHLGRYLAAA-AE-----NVVSILDAETQACRLSL----QGHTKPIDSVCWDP  689 (792)
Q Consensus       624 iwdl~~~~~~~~~~--~--~~~~v~~sp~~~~lla~s-~d-----g~I~i~D~~t~~~~~~l----~~h~~~V~sv~~sp  689 (792)
                      +||..+.+....-.  .  ....+++.+++..+++|+ .+     ..+.+||..+.+-...-    ......-....+..
T Consensus       269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~  348 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  348 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence            99998876554321  1  113355566777777777 33     57999999887644320    00000000011223


Q ss_pred             CCCEEEEE----------eCCeEEEEECCCCCCcceEEEeec------CCCceEEEEEeC-CCCEEEEEEcCC-------
Q 003842          690 SGELLASV----------SEDSVRVWTVGSGSEGECVHELSC------NGNKFHSCVFHP-TYPSLLVIGCYQ-------  745 (792)
Q Consensus       690 dg~~Las~----------s~d~I~IwDl~s~~~~~~i~~~~~------~~~~i~si~fsp-dg~~L~sgs~dg-------  745 (792)
                      ++++++.+          ..+.+..||..+............      ....-.++.|.. +++.+++|+.++       
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~  428 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  428 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence            33433333          233678899876532222211111      011224445544 667777776432       


Q ss_pred             ----eEEEEECCCCcEEEEc---ccCCC-eEEEEEeCCCCEEEEEeCC
Q 003842          746 ----SLELWNMSENKTMTLT---AHEGL-IAALAVSTETGYVASASHD  785 (792)
Q Consensus       746 ----~I~IwDl~~~~~~~~~---~h~~~-V~sl~fspdg~~LaSgs~D  785 (792)
                          .|.+||..+.....+.   ..... -.++++.+++++++.||.+
T Consensus       429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~  476 (656)
T 1k3i_A          429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR  476 (656)
T ss_dssp             CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence                6888998888766543   12222 2345667899999999865

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.22  E-value=0.00034  Score=78.89  Aligned_cols=239  Identities=12%  Similarity=0.074  Sum_probs=144.0

Q ss_pred             CeEEEEEcC-CCCEEEEE-eCCCeEEEEECCCCceeEEeccC---CCCEEEEEE-------CCCCCeEEEEeCCC-----
Q 003842          514 KVICCHFSS-DGKLLATG-GHDKKAVLWHTDTLKSKTNLEEH---SSLITDVRF-------SPSMPRLATSSFDK-----  576 (792)
Q Consensus       514 ~V~~lafsp-dg~~Lasg-s~Dg~I~vWdl~t~~~~~~l~~h---~~~V~~i~f-------spdg~~Lasgs~Dg-----  576 (792)
                      ....|+|+| ++..|+++ ...+.|++.|++++.....+...   ......|+|       ++++.+|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            478899998 34444444 44467999999887766555432   235899999       99999777776554     


Q ss_pred             --cEEEEeCCCCCcee-----EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-------CCee----------
Q 003842          577 --TVRVWDADNPGYSL-----RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-------NGSC----------  632 (792)
Q Consensus       577 --~V~IWdl~s~~~~i-----~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~-------~~~~----------  632 (792)
                        .|.+++....+...     ..+... .....++++|++.+|+++...++.|+.+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              26666544312211     222222 2345788999878888888888999999997       5543          


Q ss_pred             -EEE-ee----CCeeEEEEecCCCEEEEEE-cCCeEEEEEC--CCCeE--EEEecC---CC------------CCeE-EE
Q 003842          633 -TRV-FK----GGTAQMRFQPHLGRYLAAA-AENVVSILDA--ETQAC--RLSLQG---HT------------KPID-SV  685 (792)
Q Consensus       633 -~~~-~~----~~~~~v~~sp~~~~lla~s-~dg~I~i~D~--~t~~~--~~~l~~---h~------------~~V~-sv  685 (792)
                       ... +.    .....++|+|+++.++++. ....|+.+|.  ..+..  ...+.+   ..            .... .+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence             111 21    2246799999999766555 4678888654  33322  012211   11            1123 45


Q ss_pred             EEc-------CCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC------------------------CCceEEEEEeC
Q 003842          686 CWD-------PSGELLASVSED-SVRVWTVGSGSEGECVHELSCN------------------------GNKFHSCVFHP  733 (792)
Q Consensus       686 ~~s-------pdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~------------------------~~~i~si~fsp  733 (792)
                      +..       .++.++++-..+ +|+.++. ++    .+.++.+.                        -.....+++.+
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G----~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~  453 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG----IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD  453 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC----BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEeC-CC----CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence            554       456666655555 8999983 33    23333221                        12356788888


Q ss_pred             CCCEEEEEEc-CCeEEEEECCCCcEE
Q 003842          734 TYPSLLVIGC-YQSLELWNMSENKTM  758 (792)
Q Consensus       734 dg~~L~sgs~-dg~I~IwDl~~~~~~  758 (792)
                      +...|+++.. ...|+.++++...+.
T Consensus       454 ~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          454 VKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCccc
Confidence            7334555544 458888888766554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.21  E-value=0.00045  Score=77.89  Aligned_cols=230  Identities=13%  Similarity=0.079  Sum_probs=135.7

Q ss_pred             CEEEEEECC-CCCeEEEEeC-CCcEEEEeCCCCCceeEEeccc----CCCeEEEEE-------cCCCCeEEEEEeCCCc-
Q 003842          556 LITDVRFSP-SMPRLATSSF-DKTVRVWDADNPGYSLRTFMGH----SASVMSLDF-------HPNKDDLICSCDGDGE-  621 (792)
Q Consensus       556 ~V~~i~fsp-dg~~Lasgs~-Dg~V~IWdl~s~~~~i~~~~~h----~~~V~sl~f-------spd~~~ll~sgs~Dg~-  621 (792)
                      ....|+|.| +...|+++.. .+.|++.|+.+ + .+..+...    ......|+|       ++++..++++...++. 
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~-~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN-R-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTT-T-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCC-C-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence            467899998 3445555544 46688888875 3 33333321    235889999       9998877766655422 


Q ss_pred             -----EEEEEcCC-Cee--------EEEeeCCeeEEEEecCCCEEEEEEc-CCeEEEEECC-------CCeE--------
Q 003842          622 -----IRYWSINN-GSC--------TRVFKGGTAQMRFQPHLGRYLAAAA-ENVVSILDAE-------TQAC--------  671 (792)
Q Consensus       622 -----I~iwdl~~-~~~--------~~~~~~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~-------t~~~--------  671 (792)
                           |.+++... +..        +..+ .+...++++|+++.|+++.. ++.|+.||+.       ++..        
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             ccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence                 66776443 122        2222 34567888997777776664 6789999987       4443        


Q ss_pred             ------EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcce--EEEeecC---------------CCce
Q 003842          672 ------RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGEC--VHELSCN---------------GNKF  726 (792)
Q Consensus       672 ------~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~--i~~~~~~---------------~~~i  726 (792)
                            +..+ ........|+|+|+|++|+.+...  .|+.++...... ..  ...+.+.               -...
T Consensus       297 ~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~-~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P  374 (496)
T 3kya_A          297 PNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK-EFITPYNFVGGYKQSGYRDDVGTEARMNNP  374 (496)
T ss_dssp             TTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-EECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred             ccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc-eecccEEecCCCCCCcccCCcccccccCCC
Confidence                  2222 223456799999999965555544  888866542110 10  0111111               0123


Q ss_pred             E-EEEEe-------CCCCEEEEEEcCCeEEEEECCCCcEEEEccc------------------------CCCeEEEEEeC
Q 003842          727 H-SCVFH-------PTYPSLLVIGCYQSLELWNMSENKTMTLTAH------------------------EGLIAALAVST  774 (792)
Q Consensus       727 ~-si~fs-------pdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h------------------------~~~V~sl~fsp  774 (792)
                      . .++..       .++.++++=....+|+.++ .++...++.+.                        -.....|++++
T Consensus       375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~  453 (496)
T 3kya_A          375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD  453 (496)
T ss_dssp             EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred             eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence            4 44554       3455444444557999999 45665555432                        12367899999


Q ss_pred             C-CCEEEEEeCCCcEEEe
Q 003842          775 E-TGYVASASHDKFVKLW  791 (792)
Q Consensus       775 d-g~~LaSgs~DG~I~IW  791 (792)
                      + +.++++=....+|+.+
T Consensus       454 ~~g~lyVaD~~N~rIrki  471 (496)
T 3kya_A          454 VKEMFYVHDQVGHTIRTI  471 (496)
T ss_dssp             TTTEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEeCCCCEEEEE
Confidence            7 6555554456777765

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.15  E-value=0.0033  Score=73.42  Aligned_cols=274  Identities=10%  Similarity=-0.012  Sum_probs=158.9

Q ss_pred             CCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC--CCcEEEEeCCCCCce
Q 003842          513 SKVICCHFSSDGKLLAT-GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYS  589 (792)
Q Consensus       513 ~~V~~lafspdg~~Las-gs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~--Dg~V~IWdl~s~~~~  589 (792)
                      .....+++++.+..|+. -...+.|.+.+++.......+...-.....|++.|.+.+|+.+..  .+.|...+++. ...
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~  162 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSR  162 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-CSC
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-Cce
Confidence            46889999996655554 456789999998765444444345566789999997666666654  35666667764 222


Q ss_pred             eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc-CCeEEEEE
Q 003842          590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA-ENVVSILD  665 (792)
Q Consensus       590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~-dg~I~i~D  665 (792)
                      .......-.....|++.+++..|+++-...+.|..+|+..........   .+...+++..+  .++.+.. .+.|...|
T Consensus       163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d  240 (619)
T 3s94_A          163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACN  240 (619)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEE
T ss_pred             EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEE
Confidence            222223345678999999888888777778889999987544333222   12334555433  5555543 67888888


Q ss_pred             CCCCeEEEEecCCCC-------------------------Ce--EEE---------EEcCCC---------------CEE
Q 003842          666 AETQACRLSLQGHTK-------------------------PI--DSV---------CWDPSG---------------ELL  694 (792)
Q Consensus       666 ~~t~~~~~~l~~h~~-------------------------~V--~sv---------~~spdg---------------~~L  694 (792)
                      ..+++....+.....                         ..  .|+         |..|.|               .+|
T Consensus       241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L  320 (619)
T 3s94_A          241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL  320 (619)
T ss_dssp             SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred             CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence            876643322211000                         00  111         111211               144


Q ss_pred             EEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEEEE-cccCCCeEEEEE
Q 003842          695 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTMTL-TAHEGLIAALAV  772 (792)
Q Consensus       695 as~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~~~~~~~~-~~h~~~V~sl~f  772 (792)
                      +.+....|+..++...........+ ..-..+..++|.+.+..|+.+.. .+.|+.+++.......+ ...-..+..+++
T Consensus       321 l~~~~~~i~~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAv  399 (619)
T 3s94_A          321 LLARRTDLRRISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV  399 (619)
T ss_dssp             EEEESSCEEEEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred             EEEcccceEEEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEE
Confidence            4444446666677554321111111 12234678999997777777765 57899999887544333 333356778999


Q ss_pred             eCCCCEEEEEe-CCCcEEE
Q 003842          773 STETGYVASAS-HDKFVKL  790 (792)
Q Consensus       773 spdg~~LaSgs-~DG~I~I  790 (792)
                      ...++.|+.+. ..+.|.+
T Consensus       400 D~~~~~lY~tD~~~~~I~v  418 (619)
T 3s94_A          400 DWVARNLYWTDTGTDRIEV  418 (619)
T ss_dssp             ETTTTEEEEEETTTTEEEE
T ss_pred             ecccCcEEEEeCCCCcEEE
Confidence            87555444443 3455554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.12  E-value=0.0011  Score=79.45  Aligned_cols=201  Identities=11%  Similarity=-0.004  Sum_probs=128.5

Q ss_pred             cCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCC----ceeEEeccCCCCEEEEEECCCCCeE-EEEeCCCcEEEEeC
Q 003842          510 ASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDA  583 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~La-sgs~Dg~I~vWdl~t~----~~~~~l~~h~~~V~~i~fspdg~~L-asgs~Dg~V~IWdl  583 (792)
                      .....+..|+|++.+..|+ +-...+.|+.++++..    .....+.........|++...+..| ++-...+.|.+.++
T Consensus       421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~l  500 (791)
T 3m0c_C          421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  500 (791)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeC
Confidence            3456688999998555554 4455678999998753    2334444445667789998776544 45566788999999


Q ss_pred             CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCC-CcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEc-C
Q 003842          584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA-E  658 (792)
Q Consensus       584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D-g~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~-d  658 (792)
                      +. ......+.........|++.|.+.+|+++-..+ +.|.+.++........+..   ....+++.+..++|+.+.. .
T Consensus       501 dG-~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~  579 (791)
T 3m0c_C          501 KG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  579 (791)
T ss_dssp             TS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CC-CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCC
Confidence            75 333333333445688999999877777665443 7899999875544444432   4567999988888888765 5


Q ss_pred             CeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCc
Q 003842          659 NVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEG  713 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~~--h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~  713 (792)
                      +.|..+|+........+..  .-.....|++.  +.+|+.....  .|...|..++...
T Consensus       580 ~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          580 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             CcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcce
Confidence            6899999876544333332  22234566664  3345544443  7888887666443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.09  E-value=0.00057  Score=74.04  Aligned_cols=224  Identities=12%  Similarity=0.104  Sum_probs=120.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--EEec---cCCCCEEEEEECCC---CCeEEEEeC-C-----Cc
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLE---EHSSLITDVRFSPS---MPRLATSSF-D-----KT  577 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~--~~l~---~h~~~V~~i~fspd---g~~Lasgs~-D-----g~  577 (792)
                      -.....++|.|||+++++ ..+|.|++++  +++..  ..+.   ........|+|+|+   +..|+++.. +     ..
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            445789999999985554 5679999998  34322  1121   22456899999998   555555543 2     56


Q ss_pred             EEEEeCCCCC----c-eeEEec---ccCCCeEEEEEcCCCCeEEEEEeC-------------CCcEEEEEcCCC------
Q 003842          578 VRVWDADNPG----Y-SLRTFM---GHSASVMSLDFHPNKDDLICSCDG-------------DGEIRYWSINNG------  630 (792)
Q Consensus       578 V~IWdl~s~~----~-~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~-------------Dg~I~iwdl~~~------  630 (792)
                      |..|++....    . .+..+.   ........|+|.|++. |+++.+.             .|.|..++....      
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np  185 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP  185 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence            8888876421    1 111122   1112346899999985 4444322             145666665420      


Q ss_pred             ------eeEEEee---CCeeEEEEecCCCEEEEEEcC-Ce--------EEEEECCC----------------CeEEEEec
Q 003842          631 ------SCTRVFK---GGTAQMRFQPHLGRYLAAAAE-NV--------VSILDAET----------------QACRLSLQ  676 (792)
Q Consensus       631 ------~~~~~~~---~~~~~v~~sp~~~~lla~s~d-g~--------I~i~D~~t----------------~~~~~~l~  676 (792)
                            .....+.   .....++|+++.+.|+++... +.        |.+...-.                ..++..+.
T Consensus       186 f~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~  265 (352)
T 2ism_A          186 FLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP  265 (352)
T ss_dssp             TTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred             ccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence                  0111111   123457899955656655442 22        33332111                01222332


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc---ceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003842          677 GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG---ECVHELSCNGNKFHSCVFHPTYPSLLVI  741 (792)
Q Consensus       677 ~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~---~~i~~~~~~~~~i~si~fspdg~~L~sg  741 (792)
                       +......++| .+|.++++...+ .|...++......   .....+......+..+++.|||..+++.
T Consensus       266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT  332 (352)
T ss_dssp             -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred             -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence             2223556777 466666655555 7877777543210   1122222334578899999998755554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.09  E-value=0.021  Score=66.71  Aligned_cols=117  Identities=9%  Similarity=-0.041  Sum_probs=80.2

Q ss_pred             CCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC--CCcEEEEeCCCCCce
Q 003842          513 SKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYS  589 (792)
Q Consensus       513 ~~V~~lafspdg~~L-asgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~--Dg~V~IWdl~s~~~~  589 (792)
                      .....|+++..+..| ++-...+.|.+.+++.......+...-.....|++.|...+|+.+..  .+.|...+++.  ..
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG--~~  157 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG--SE  157 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--CS
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC--Cc
Confidence            356789998765555 44455688999998765443334345566899999986666666553  46777777764  22


Q ss_pred             eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe
Q 003842          590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS  631 (792)
Q Consensus       590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~  631 (792)
                      ...+...-.....|++.+++..|+++-...+.|..+|+....
T Consensus       158 ~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~  199 (628)
T 4a0p_A          158 RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN  199 (628)
T ss_dssp             CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCc
Confidence            333333456678999999888888777778889999986543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.08  E-value=0.0071  Score=72.25  Aligned_cols=261  Identities=10%  Similarity=0.092  Sum_probs=151.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR  591 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~  591 (792)
                      ...|.|+....+| .|.+|+.+| +.+||..+.+...........|.++.. .++ .|..++.+ -|..||..+ .. +.
T Consensus        62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~-~~-~~  134 (758)
T 3ott_A           62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQS-RK-LT  134 (758)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTT-CC-EE
T ss_pred             CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCC-Ce-EE
Confidence            4569998888777 566676655 788998876543311112345777765 344 56667666 488888875 22 33


Q ss_pred             Eec-----ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-eC-------CeeEEEEecCCCEEEEEEcC
Q 003842          592 TFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KG-------GTAQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       592 ~~~-----~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~-------~~~~v~~sp~~~~lla~s~d  658 (792)
                      .+.     .....|.+|....++...+  ++. +-|..||..+++..... ..       .+.++....+++.+.+++. 
T Consensus       135 ~~~~~~~~l~~~~i~~i~~d~~g~lWi--gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-  210 (758)
T 3ott_A          135 SFDTRRNGLPNNTIYSIIRTKDNQIYV--GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-  210 (758)
T ss_dssp             EECHHHHCCSCSCEEEEEECTTCCEEE--EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred             EeccCCCCcCCCeEEEEEEcCCCCEEE--EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence            331     1235688888877765333  444 45888898776643321 11       1445555666676777764 


Q ss_pred             CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEe-----ecCCCceEEEEEeC
Q 003842          659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL-----SCNGNKFHSCVFHP  733 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~-----~~~~~~i~si~fsp  733 (792)
                      +.|..||..+++...........|.+++.+.+|.+.+.. .+.+.+++..+... ..+...     ......|.++....
T Consensus       211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~  288 (758)
T 3ott_A          211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQ  288 (758)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECT
T ss_pred             CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcC
Confidence            568889988765432211122458889888888876654 55788888765421 111100     01234588888777


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCc-EEEEc-----ccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003842          734 TYPSLLVIGCYQSLELWNMSENK-TMTLT-----AHEGLIAALAVSTETGYVASASHDKFV  788 (792)
Q Consensus       734 dg~~L~sgs~dg~I~IwDl~~~~-~~~~~-----~h~~~V~sl~fspdg~~LaSgs~DG~I  788 (792)
                      ++. |.+|+..| |.++.....- .....     .....|.++....+|.+.+. +.+|.+
T Consensus       289 ~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~  346 (758)
T 3ott_A          289 EHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLI  346 (758)
T ss_dssp             TCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEE
T ss_pred             CCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcce
Confidence            776 56666666 5555432211 11111     12346888888877776554 455533

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.08  E-value=0.0028  Score=74.11  Aligned_cols=218  Identities=10%  Similarity=-0.025  Sum_probs=141.5

Q ss_pred             eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEE
Q 003842          568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMR  644 (792)
Q Consensus       568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~  644 (792)
                      +|+.+ ....|+..|++............-..+..|+|++.+..++++-..++.|+.+++........+..   ....++
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA   86 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA   86 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence            44444 45679999998633322211223356889999998888888888889999999986554444432   356788


Q ss_pred             EecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe-C-C-eEEEEECCCCCCcceEEEee
Q 003842          645 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-E-D-SVRVWTVGSGSEGECVHELS  720 (792)
Q Consensus       645 ~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s-~-d-~I~IwDl~s~~~~~~i~~~~  720 (792)
                      +.+.++.|+.+.. .+.|.+.+++.......+...-.....|+++|...+|+... . . .|...++.... ...+   .
T Consensus        87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l---~  162 (628)
T 4a0p_A           87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTL---V  162 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEE---E
T ss_pred             EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEE---E
Confidence            9888887777665 67999999876543333333445578999998655555544 2 3 77777775432 2222   2


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          721 CNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       721 ~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ........+++++++..|+++... +.|..+|+.......+........+|++.. +.++++-...+.|...
T Consensus       163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~  233 (628)
T 4a0p_A          163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERA  233 (628)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEE
Confidence            245568899999988888888664 689999997755443333444566788764 3333333335556543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.02  E-value=0.002  Score=69.79  Aligned_cols=228  Identities=12%  Similarity=0.052  Sum_probs=124.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEEec---cCCCCEEEEEECCC---CCeEEEEeC----C----C
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLE---EHSSLITDVRFSPS---MPRLATSSF----D----K  576 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~-~~~~l~---~h~~~V~~i~fspd---g~~Lasgs~----D----g  576 (792)
                      -.....++|.|||+ |+++..+|.|+++| .+++ .+..+.   ........|+|+|+   +..|+++..    +    .
T Consensus        28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            45688999999997 44455679999997 3454 222221   22356899999997   555555443    3    5


Q ss_pred             cEEEEeCCCCC------cee-EEecc-cCCCeEEEEEcCCCCeEEEEEeC------------CCcEEEEEcCCCe-----
Q 003842          577 TVRVWDADNPG------YSL-RTFMG-HSASVMSLDFHPNKDDLICSCDG------------DGEIRYWSINNGS-----  631 (792)
Q Consensus       577 ~V~IWdl~s~~------~~i-~~~~~-h~~~V~sl~fspd~~~ll~sgs~------------Dg~I~iwdl~~~~-----  631 (792)
                      .|..|++....      +.+ ..+.. .......|+|.|++..++..++.            .|.|..++....-     
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            67778776431      111 11221 11234579999998644433321            2456555554210     


Q ss_pred             --eEEEee---CCeeEEEEecCCCEEEEEEcCC----eEEEEECCC----------------CeEEEEecCCCCCeEEEE
Q 003842          632 --CTRVFK---GGTAQMRFQPHLGRYLAAAAEN----VVSILDAET----------------QACRLSLQGHTKPIDSVC  686 (792)
Q Consensus       632 --~~~~~~---~~~~~v~~sp~~~~lla~s~dg----~I~i~D~~t----------------~~~~~~l~~h~~~V~sv~  686 (792)
                        ....+.   .....++|+++.+.|+++....    .|.+...-.                ..++..+.........++
T Consensus       186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~  265 (354)
T 3a9g_A          186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS  265 (354)
T ss_dssp             STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred             CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence              011121   2345688999666666665422    344432111                012233311223567788


Q ss_pred             Ec-------CCCCEEEEEeCC-eEEEEECCCCCCcceEEEee-cCCCceEEEEEeCCCCEEEEE
Q 003842          687 WD-------PSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYPSLLVI  741 (792)
Q Consensus       687 ~s-------pdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~-~~~~~i~si~fspdg~~L~sg  741 (792)
                      |.       .+|.++++.... .|..+++...........+. .....+..+++.|||..+++.
T Consensus       266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            83       467666665555 88888886432111122332 234578899999999644444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.01  E-value=0.0017  Score=70.22  Aligned_cols=227  Identities=14%  Similarity=0.128  Sum_probs=124.7

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec---ccCCCeEEEEEcCC---CCeEEEEEeCC-----CcE
Q 003842          554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPN---KDDLICSCDGD-----GEI  622 (792)
Q Consensus       554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~---~h~~~V~sl~fspd---~~~ll~sgs~D-----g~I  622 (792)
                      -...+.|+|.|+|+++ ++..+|.|++++ ......+..+.   ........|+|+|+   +..++++...+     +.|
T Consensus        30 l~~P~~ia~~pdG~l~-V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           30 LEVPWALAFLPDGGML-IAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             CSCEEEEEECTTSCEE-EEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCCceEEEEcCCCeEE-EEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            4457899999999854 455669999998 32111122111   22356889999998   55566554433     678


Q ss_pred             EEEEcCCCee------EEEee--C----CeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC--------
Q 003842          623 RYWSINNGSC------TRVFK--G----GTAQMRFQPHLGRYLAAAA-------------ENVVSILDAETQ--------  669 (792)
Q Consensus       623 ~iwdl~~~~~------~~~~~--~----~~~~v~~sp~~~~lla~s~-------------dg~I~i~D~~t~--------  669 (792)
                      ..|+...+..      +..+.  .    ....+.|.|++..+++.+.             .+.|.-+|.+..        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            8888775421      11122  1    2356899999855544332             146666665431        


Q ss_pred             ------eEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eE------EEEECCCCCC---------------cceEEEee
Q 003842          670 ------ACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SV------RVWTVGSGSE---------------GECVHELS  720 (792)
Q Consensus       670 ------~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I------~IwDl~s~~~---------------~~~i~~~~  720 (792)
                            ..+.. .++ .....++|+| ++.++++-... .+      .|.-+..+..               ...+..+ 
T Consensus       188 ~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-  264 (352)
T 2ism_A          188 GRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-  264 (352)
T ss_dssp             TCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred             CCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence                  01111 122 2356789999 67766654433 32      2333333220               1122222 


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-------EEEEcccCCCeEEEEEeCCCCEEEEEeC-CC
Q 003842          721 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-------TMTLTAHEGLIAALAVSTETGYVASASH-DK  786 (792)
Q Consensus       721 ~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~-------~~~~~~h~~~V~sl~fspdg~~LaSgs~-DG  786 (792)
                      ........++| .++..+++.-..+.|...+++...       ...+..-...+.++++.|||.++++... +|
T Consensus       265 ~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~~~g  337 (352)
T 2ism_A          265 PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSNRDG  337 (352)
T ss_dssp             TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECSTTT
T ss_pred             CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeCCCC
Confidence            12234566777 455544444445678887776432       1122233467899999999987776543 44

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.00  E-value=0.0048  Score=65.87  Aligned_cols=230  Identities=10%  Similarity=0.083  Sum_probs=127.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec---cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY  588 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~---~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~  588 (792)
                      ...+.+|.|++ +..++ ++.++.|+. ..+.++.-..+.   .+...+..|.+.+++..++++ .+|.|  |.....+.
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~  152 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGK  152 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTS
T ss_pred             CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCC
Confidence            34588888876 44444 455665544 333344333322   234567888887776655554 45544  32222233


Q ss_pred             eeE-EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEE-EEc--CCCeeEEE-eeCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003842          589 SLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY-WSI--NNGSCTRV-FKGGTAQMRFQPHLGRYLAAAAENVVSI  663 (792)
Q Consensus       589 ~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~i-wdl--~~~~~~~~-~~~~~~~v~~sp~~~~lla~s~dg~I~i  663 (792)
                      ... ........+.++++.+++. +++++ .+|.|+. +|-  .+-+.+.. .......+.+.+++ .+++++.+|.+++
T Consensus       153 tW~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g-~~~~~~~~G~~~~  229 (327)
T 2xbg_A          153 NWQALVQEAIGVMRNLNRSPSGE-YVAVS-SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDG-RLWMIVNGGKIAF  229 (327)
T ss_dssp             SEEEEECSCCCCEEEEEECTTSC-EEEEE-TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTS-CEEEEETTTEEEE
T ss_pred             CCEEeecCCCcceEEEEEcCCCc-EEEEE-CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCC-CEEEEeCCceEEE
Confidence            222 2334556789999998764 45444 4555444 332  12222211 12345567777775 5666777888877


Q ss_pred             EECCCCeEEEEecC----CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003842          664 LDAETQACRLSLQG----HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL  739 (792)
Q Consensus       664 ~D~~t~~~~~~l~~----h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~  739 (792)
                      .+...++.-..+..    ....+.++.+.+++.+++++..+.| ++....+.....+.........+..+.|.+++ .++
T Consensus       230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~  307 (327)
T 2xbg_A          230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGF  307 (327)
T ss_dssp             EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEE
T ss_pred             ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceE
Confidence            65333333222221    2235889999988888887776665 44554443333222111123457788887554 477


Q ss_pred             EEEcCCeEEEEEC
Q 003842          740 VIGCYQSLELWNM  752 (792)
Q Consensus       740 sgs~dg~I~IwDl  752 (792)
                      +++.+|.|.-++-
T Consensus       308 ~~G~~G~i~~~~~  320 (327)
T 2xbg_A          308 ILGQKGILLRYVT  320 (327)
T ss_dssp             EECSTTEEEEECC
T ss_pred             EEcCCceEEEEcC
Confidence            7788888777653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.00  E-value=1.2e-05  Score=95.56  Aligned_cols=224  Identities=8%  Similarity=-0.037  Sum_probs=133.9

Q ss_pred             CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCC---CceeEEecccCCCeEEEEEcC
Q 003842          532 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNP---GYSLRTFMGHSASVMSLDFHP  607 (792)
Q Consensus       532 ~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~V~IWdl~s~---~~~i~~~~~h~~~V~sl~fsp  607 (792)
                      ..+.|++.++++......+.. ...+..|+|.+.+..|+.+ ...+.|+.+++...   ......+.........|++.+
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~  462 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  462 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred             CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence            346788888887665444433 3456788999876666655 45678999998741   111111111222345788876


Q ss_pred             CCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEecCCCCCe
Q 003842          608 NKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPI  682 (792)
Q Consensus       608 d~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~--dg~I~i~D~~t~~~~~~l~~h~~~V  682 (792)
                      .+..|+++-...+.|.++++........+.   .....+++.|.+++|+.+..  .+.|.++++........+...-...
T Consensus       463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~P  542 (699)
T 1n7d_A          463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP  542 (699)
T ss_dssp             SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred             eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence            666677666667899999988655444433   23466888888777776654  2688888876443222222223446


Q ss_pred             EEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEE
Q 003842          683 DSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMT  759 (792)
Q Consensus       683 ~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~  759 (792)
                      ..|+|++++..|+.+...  .|.++++... ....+............+++..+  .|+++. ..+.|..+|..+++.+.
T Consensus       543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          543 NGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEE
T ss_pred             cEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceE
Confidence            689999976655555444  8999998642 21222211111223345555443  455554 45689999988777664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.99  E-value=0.0017  Score=75.83  Aligned_cols=221  Identities=9%  Similarity=-0.024  Sum_probs=136.0

Q ss_pred             CCCeEEEEECCCCc-eeEEeccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCC
Q 003842          532 HDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK  609 (792)
Q Consensus       532 ~Dg~I~vWdl~t~~-~~~~l~~h~~~V~~i~fspdg~~Lasgs-~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~  609 (792)
                      ....|++.|++... ....+......+..|+|++.+..|+.+. ..+.|..++++........+...-.....|++.+.+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~   95 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   95 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence            45678888887653 2222333455688999998766666554 467888899875322223333333578899999987


Q ss_pred             CeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEecCCCCCeEE
Q 003842          610 DDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDS  684 (792)
Q Consensus       610 ~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~--dg~I~i~D~~t~~~~~~l~~h~~~V~s  684 (792)
                      ..++++-...+.|.+.++........+.   .....+++.|..++++.+..  .+.|...++............-.....
T Consensus        96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G  175 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG  175 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence            8888888888999999998654333332   24567999999888887764  367888887654333333334456789


Q ss_pred             EEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcE
Q 003842          685 VCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKT  757 (792)
Q Consensus       685 v~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~~~~~  757 (792)
                      |++++++..|+.+...  .|..+|+........+   .........+++..+  .|+.+.. .+.|...|..+++.
T Consensus       176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~---~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred             EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE---eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence            9999987766666554  8888888643211111   111222345666544  5666554 46888888877653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.95  E-value=0.038  Score=60.36  Aligned_cols=248  Identities=10%  Similarity=0.149  Sum_probs=151.8

Q ss_pred             CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCe
Q 003842          532 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD  611 (792)
Q Consensus       532 ~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~  611 (792)
                      .+..|.|.|+.+...+.+..-.   --+.-.+|..+.||.-. ..++.|||+++ +..++.+.-.. .|.-=.|..+. .
T Consensus        46 ~~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~-K~klks~~~~e-~VvfWkWis~~-~  118 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHTMTD-DVTFWKWISLN-T  118 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTT-TEEEEEEECSS-CCCEEEEEETT-E
T ss_pred             CCCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHH-hhhhcceecCC-CceEEEecCCC-e
Confidence            3447999999886554332211   11345678777776665 77899999998 55666665434 45555565442 2


Q ss_pred             EEEEEeCCCcEEEEEcCC-CeeEEEeeC-------CeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEec
Q 003842          612 LICSCDGDGEIRYWSINN-GSCTRVFKG-------GTAQMRFQPHLGRYLAAAA-------ENVVSILDAETQACRLSLQ  676 (792)
Q Consensus       612 ll~sgs~Dg~I~iwdl~~-~~~~~~~~~-------~~~~v~~sp~~~~lla~s~-------dg~I~i~D~~t~~~~~~l~  676 (792)
                      +. ..+ +..|+-|++.. ...++.|+.       .+...+.+++.++++..+-       .|.+.+|..+.+. -..++
T Consensus       119 l~-lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ie  195 (494)
T 1bpo_A          119 VA-LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE  195 (494)
T ss_dssp             EE-EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEEC
T ss_pred             EE-EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhe
Confidence            33 222 77899999974 345556543       2344567788888776553       4678889887653 34456


Q ss_pred             CCCCCeEEEEEcCCC---CEEEEEeC----CeEEEEECCCCC-----CcceEEEe-ec---CCCceEEEEEeCCCCEEEE
Q 003842          677 GHTKPIDSVCWDPSG---ELLASVSE----DSVRVWTVGSGS-----EGECVHEL-SC---NGNKFHSCVFHPTYPSLLV  740 (792)
Q Consensus       677 ~h~~~V~sv~~spdg---~~Las~s~----d~I~IwDl~s~~-----~~~~i~~~-~~---~~~~i~si~fspdg~~L~s  740 (792)
                      +|......+.+..+.   .+|+.+..    ..+.|.++....     ..+....+ ..   ...-..++.+++....++.
T Consensus       196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv  275 (494)
T 1bpo_A          196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL  275 (494)
T ss_dssp             CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred             eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence            665544433332211   24444443    278999986431     11111111 11   1334677889999999999


Q ss_pred             EEcCCeEEEEECCCCcEEEE-cccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003842          741 IGCYQSLELWNMSENKTMTL-TAHEGLIAALAVSTETGYVASASHDKFVK  789 (792)
Q Consensus       741 gs~dg~I~IwDl~~~~~~~~-~~h~~~V~sl~fspdg~~LaSgs~DG~I~  789 (792)
                      .+..|.|++||+.++.++.. .-....|...+...+..-++....+|.|.
T Consensus       276 iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl  325 (494)
T 1bpo_A          276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  325 (494)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred             EecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence            99999999999999998833 34445565555555545555556666553

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.95  E-value=0.02  Score=68.25  Aligned_cols=265  Identities=8%  Similarity=0.026  Sum_probs=152.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe-cc----CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EE----HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l-~~----h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      ...|.++....+|.+.+ |+.+ -|..||..+.+..... ..    ....|.+|....++..|..|+.. -|..||..+ 
T Consensus       145 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~-Gl~~~~~~~-  220 (758)
T 3ott_A          145 NNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG-YLFQYFPST-  220 (758)
T ss_dssp             CSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE-EEEEEETTT-
T ss_pred             CCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECC-CCeEEcCCC-
Confidence            35689999888887555 4444 5778888776543221 11    12348888888777766666644 488888875 


Q ss_pred             CceeEEec-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----------CCeeEEEEecCCCEEEEE
Q 003842          587 GYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------GGTAQMRFQPHLGRYLAA  655 (792)
Q Consensus       587 ~~~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----------~~~~~v~~sp~~~~lla~  655 (792)
                      +. +..+. .....|.+|....++...  .|+. +-|.+++..++.......          ..+.++....+ +.+.+|
T Consensus       221 ~~-~~~~~~l~~~~i~~i~~d~~g~lW--igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~-g~lWiG  295 (758)
T 3ott_A          221 GQ-IKQTEAFHNNSIKSLALDGNGDLL--AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE-HNIWLG  295 (758)
T ss_dssp             TE-EEEEEEEEEEEEEEEEECTTCCEE--EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT-CCEEEE
T ss_pred             Ce-EEeccCCCCCeEEEEEEcCCCCEE--EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC-CCEEEE
Confidence            22 22221 123458888887776533  3443 458888887665433221          12344444443 456667


Q ss_pred             EcCCeEEEEECCCCeEEEEec-----CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEee-------cCC
Q 003842          656 AAENVVSILDAETQACRLSLQ-----GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELS-------CNG  723 (792)
Q Consensus       656 s~dg~I~i~D~~t~~~~~~l~-----~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~-------~~~  723 (792)
                      +..| +.++.....-......     .....|.+++.+.+|.+.+.. .+.+..++..++.... +..+.       ...
T Consensus       296 T~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~  372 (758)
T 3ott_A          296 TDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHD-AIWYRMGDKTYPLSH  372 (758)
T ss_dssp             ESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCC-CEEECTTCSSSCCSC
T ss_pred             eCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEee-CCcceeecccccccce-eEEeccCCcCCCCCC
Confidence            7666 5444332211111111     123468899988888876654 4567777765432111 11111       122


Q ss_pred             CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc--c-----cCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          724 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT--A-----HEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       724 ~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~--~-----h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ..|.++....++. |.+|+ ++.|..||..+++...+.  .     ....|.++....++.+.+ |+..+-|.+|
T Consensus       373 ~~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~  444 (758)
T 3ott_A          373 NRIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVV  444 (758)
T ss_dssp             SCEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEE
T ss_pred             CceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEE
Confidence            4578888777776 55555 568999999888765332  1     234688888877776544 5555445554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.94  E-value=0.0043  Score=67.14  Aligned_cols=224  Identities=14%  Similarity=0.127  Sum_probs=127.9

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec---ccCCCeEEEEEcCC---CCeEEEEEeC---C----C
Q 003842          554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPN---KDDLICSCDG---D----G  620 (792)
Q Consensus       554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~---~h~~~V~sl~fspd---~~~ll~sgs~---D----g  620 (792)
                      -...+.|+|.|+++ |+++..+|.|+++|... ...+..+.   ........|+|+|+   +..++++-..   +    .
T Consensus        28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G-~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVTERPGRLVLISPSG-KKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEEETTTEEEEECSSC-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCe-EEEEeCCCEEEEEeCCC-ceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            45578999999997 55556669999997432 22222211   22356889999997   5556555432   3    5


Q ss_pred             cEEEEEcCCC--e-----eE-EEeeC----CeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC------
Q 003842          621 EIRYWSINNG--S-----CT-RVFKG----GTAQMRFQPHLGRYLAAAA-------------ENVVSILDAETQ------  669 (792)
Q Consensus       621 ~I~iwdl~~~--~-----~~-~~~~~----~~~~v~~sp~~~~lla~s~-------------dg~I~i~D~~t~------  669 (792)
                      .|..|+....  .     .+ ..+..    ....+.|.|++..+++.+.             .|.|..+|.+..      
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6778887654  1     11 11221    2356899999865555432             245666665432      


Q ss_pred             ---eEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC----eEEEEECCCCCC---------------cceEEEeecCCCce
Q 003842          670 ---ACRLSLQGHTKPIDSVCWDP-SGELLASVSED----SVRVWTVGSGSE---------------GECVHELSCNGNKF  726 (792)
Q Consensus       670 ---~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d----~I~IwDl~s~~~---------------~~~i~~~~~~~~~i  726 (792)
                         ..+. ..++. ....++|++ +++++++-...    .|.+..  .+..               ...+..+.......
T Consensus       186 f~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap  261 (354)
T 3a9g_A          186 FPNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP  261 (354)
T ss_dssp             STTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred             CCCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence               1122 12332 346799999 67766654332    344432  2210               01222321223456


Q ss_pred             EEEEEe-------CCCCEEEEEEcCCeEEEEECCCC-cEE---EEc-ccCCCeEEEEEeCCCCEEEEEe
Q 003842          727 HSCVFH-------PTYPSLLVIGCYQSLELWNMSEN-KTM---TLT-AHEGLIAALAVSTETGYVASAS  783 (792)
Q Consensus       727 ~si~fs-------pdg~~L~sgs~dg~I~IwDl~~~-~~~---~~~-~h~~~V~sl~fspdg~~LaSgs  783 (792)
                      ..++|.       .++.++++.-..+.|..+++... +..   .+. .....+..+++.|||.++++..
T Consensus       262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            778883       45655555555568988888753 332   222 2246789999999998777664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.94  E-value=0.0015  Score=70.64  Aligned_cols=193  Identities=9%  Similarity=0.050  Sum_probs=109.7

Q ss_pred             CEEEEEECCCCCeEEEE------------eCCCcEEEEeCCCCCceeEE--ecc-----cCCCeEEEEEcC--CCC-eEE
Q 003842          556 LITDVRFSPSMPRLATS------------SFDKTVRVWDADNPGYSLRT--FMG-----HSASVMSLDFHP--NKD-DLI  613 (792)
Q Consensus       556 ~V~~i~fspdg~~Lasg------------s~Dg~V~IWdl~s~~~~i~~--~~~-----h~~~V~sl~fsp--d~~-~ll  613 (792)
                      ...+|...++|..++++            ..+|.|.+||+.+.......  +.+     .......|.+.+  ++. +++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34455666665443333            26899999999753222222  222     234677888866  344 344


Q ss_pred             EEEeC--CCcEEEEEcCCC--e--eEEEeeC----CeeEEEEecCCCEEEEEE-----------------cCCeEEEEEC
Q 003842          614 CSCDG--DGEIRYWSINNG--S--CTRVFKG----GTAQMRFQPHLGRYLAAA-----------------AENVVSILDA  666 (792)
Q Consensus       614 ~sgs~--Dg~I~iwdl~~~--~--~~~~~~~----~~~~v~~sp~~~~lla~s-----------------~dg~I~i~D~  666 (792)
                      ++-..  +..|.+|++...  .  .+..+.+    ..+.+.+.+++..+++..                 ..|.|+.||.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            44333  467778777653  2  2223332    356788888866555432                 1245666666


Q ss_pred             CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeC-CCCEEEEEEc
Q 003842          667 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-TYPSLLVIGC  743 (792)
Q Consensus       667 ~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp-dg~~L~sgs~  743 (792)
                      ..-+.+  .. .-..-+.|+|+||+++|+.+...  .|..|++.........+.+ ........+++.+ +|++.+++..
T Consensus       211 ~~~~~~--~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          211 NDVRVV--AE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             TCCEEE--EE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred             CeEEEe--ec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence            422221  21 22346889999999988777654  8999998643222223333 2346678899999 5887766654


Q ss_pred             CC-eEEEEEC
Q 003842          744 YQ-SLELWNM  752 (792)
Q Consensus       744 dg-~I~IwDl  752 (792)
                      ++ .|..|+.
T Consensus       287 ~g~~v~~~~P  296 (355)
T 3sre_A          287 NGMRIFFYDA  296 (355)
T ss_dssp             CHHHHHSCCT
T ss_pred             CceEEEEECC
Confidence            42 3444443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.93  E-value=0.0028  Score=67.23  Aligned_cols=200  Identities=9%  Similarity=0.096  Sum_probs=122.3

Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEE-ecc----CC--CCEEEEEE---CCCCCeEEEEe---
Q 003842          508 VRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTN-LEE----HS--SLITDVRF---SPSMPRLATSS---  573 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs-~Dg~I~vWdl~t~~~~~~-l~~----h~--~~V~~i~f---spdg~~Lasgs---  573 (792)
                      +....-...|++|++....|..++ ..+.|..||...+..... +.+    ..  ..+..|.|   .++++++++..   
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~   87 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK   87 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence            344455567899988555666655 799999999986544333 222    11  13689999   68877777543   


Q ss_pred             ----------CCCcEEEEeCC---CCCcee-EEeccc-----------CCCeEEEEEcCCCCeEEEEEeCC-CcEEEEEc
Q 003842          574 ----------FDKTVRVWDAD---NPGYSL-RTFMGH-----------SASVMSLDFHPNKDDLICSCDGD-GEIRYWSI  627 (792)
Q Consensus       574 ----------~Dg~V~IWdl~---s~~~~i-~~~~~h-----------~~~V~sl~fspd~~~ll~sgs~D-g~I~iwdl  627 (792)
                                .+..|..||+.   ++.... ..+...           ...+..+++.++|+.++ +++.. +.|..++.
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYV-t~s~~~~~I~rV~p  166 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYV-AFALGMPAIARVSA  166 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEE-EEEESSCEEEEECT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEE-eCCCCCCeEEEEeC
Confidence                      26779999998   533222 222211           12478999999987555 67767 77777776


Q ss_pred             CCCeeEEEee--------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEec--CC---CCCeEEE-EEcCCCC
Q 003842          628 NNGSCTRVFK--------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQ--GH---TKPIDSV-CWDPSGE  692 (792)
Q Consensus       628 ~~~~~~~~~~--------~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~-~~~l~--~h---~~~V~sv-~~spdg~  692 (792)
                      ........+.        ...+-+++.|++..|++....+.|..+|+++... ...+.  +.   -.....| ....+|+
T Consensus       167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~  246 (334)
T 2p9w_A          167 DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE  246 (334)
T ss_dssp             TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred             CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence            6442221111        1245799999999999998899999999885432 01111  21   1123333 3334777


Q ss_pred             EEEE-EeCC-eEEEEECC
Q 003842          693 LLAS-VSED-SVRVWTVG  708 (792)
Q Consensus       693 ~Las-~s~d-~I~IwDl~  708 (792)
                      .|++ .... .+.+.+..
T Consensus       247 vllV~~~~~~~~~l~S~D  264 (334)
T 2p9w_A          247 SVLVGARAPYAISFRSWD  264 (334)
T ss_dssp             EEEEEEETTEEEEEECSS
T ss_pred             EEEEEcCCCCEEEEECCC
Confidence            7444 4444 45555443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.91  E-value=0.0051  Score=76.79  Aligned_cols=271  Identities=13%  Similarity=0.111  Sum_probs=145.3

Q ss_pred             CCCeEEEEEcCC------CCEEEEEeC-CCeEEEEECCCCceeEEecc-CCCCEEEEEEC--CCCCeEEEEeCCCcEEEE
Q 003842          512 TSKVICCHFSSD------GKLLATGGH-DKKAVLWHTDTLKSKTNLEE-HSSLITDVRFS--PSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       512 ~~~V~~lafspd------g~~Lasgs~-Dg~I~vWdl~t~~~~~~l~~-h~~~V~~i~fs--pdg~~Lasgs~Dg~V~IW  581 (792)
                      ...|.|+++.+.      ++++|+|.. |++|+|+++.+.+.+....- ......+|.+.  ....+|.+|-.||.+..+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            567999999863      369999997 99999999998776654321 11233444333  233578999999988777


Q ss_pred             eCCCC-Ccee--E-EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC-Ce-eEEEEecCC--CEEE
Q 003842          582 DADNP-GYSL--R-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-GT-AQMRFQPHL--GRYL  653 (792)
Q Consensus       582 dl~s~-~~~i--~-~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-~~-~~v~~sp~~--~~ll  653 (792)
                      .++.. +...  + .+.+ ..++.=..|...+...+++++ +.-..+|.-+..-....+.. .+ ....|+...  +.++
T Consensus       633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v  710 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLA  710 (1158)
T ss_dssp             EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEE
T ss_pred             EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEE
Confidence            66531 2221  1 2222 345544444444444444444 44444444332211111111 12 223344322  3344


Q ss_pred             EEEcCCeEEEEECCCCe--EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------------------------------
Q 003842          654 AAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED-------------------------------  700 (792)
Q Consensus       654 a~s~dg~I~i~D~~t~~--~~~~l~~h~~~V~sv~~spdg~~Las~s~d-------------------------------  700 (792)
                       +..++.++|.-+.+..  .+.++. -...++.++++|+.+.++.+..+                               
T Consensus       711 -~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1158)
T 3ei3_A          711 -LANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKL  788 (1158)
T ss_dssp             -EECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCC
T ss_pred             -EEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccc
Confidence             4445568887765431  222222 23457778888876654443311                               


Q ss_pred             -------------------eEEEEECCCCCCcceEEEeecCCCc-eEEEE---EeCC-CCEEEEEE----------cCCe
Q 003842          701 -------------------SVRVWTVGSGSEGECVHELSCNGNK-FHSCV---FHPT-YPSLLVIG----------CYQS  746 (792)
Q Consensus       701 -------------------~I~IwDl~s~~~~~~i~~~~~~~~~-i~si~---fspd-g~~L~sgs----------~dg~  746 (792)
                                         .|+++|-.+.   ..+..+.-..+. +.+++   |..+ ..+|++|+          ..|.
T Consensus       789 ~~~~~~~~~~~~g~~~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr  865 (1158)
T 3ei3_A          789 FSSSTAPHETSFGEEVEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR  865 (1158)
T ss_dssp             C----------CCCEEEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred             ccccccCchhhcCCceeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence                               2445554333   333333322222 33333   3222 46888887          2478


Q ss_pred             EEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          747 LELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       747 I~IwDl~~~~~~--~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |++|++.+++..  .....++.|++++-- +|++||+.  ..+|+||+
T Consensus       866 i~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~  910 (1158)
T 3ei3_A          866 IVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYE  910 (1158)
T ss_dssp             EEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEE
T ss_pred             EEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEE
Confidence            999999765544  333557889998744 45444433  46788875

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.90  E-value=0.0026  Score=68.10  Aligned_cols=179  Identities=9%  Similarity=0.179  Sum_probs=116.6

Q ss_pred             eEEEEEeCCCcEEEEEcCCCeeEEEee-CCeeEEEEecC----CCE--E-EEEEc---CCeEEEEEC--CCCeEEEEecC
Q 003842          611 DLICSCDGDGEIRYWSINNGSCTRVFK-GGTAQMRFQPH----LGR--Y-LAAAA---ENVVSILDA--ETQACRLSLQG  677 (792)
Q Consensus       611 ~ll~sgs~Dg~I~iwdl~~~~~~~~~~-~~~~~v~~sp~----~~~--l-la~s~---dg~I~i~D~--~t~~~~~~l~~  677 (792)
                      .+++...+++-+.+||+ .++.+..+. +..+.+.+-+.    +..  + ++...   ++.|.+|++  .++. +..+..
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~  118 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTD  118 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSC
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccc
Confidence            35657777889999999 788887776 45555555542    222  3 33333   478999966  3443 444421


Q ss_pred             ------CC-CCeEEEEE--cCC-CC-EEEEEeCC-eEEEEECCCC----CCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003842          678 ------HT-KPIDSVCW--DPS-GE-LLASVSED-SVRVWTVGSG----SEGECVHELSCNGNKFHSCVFHPTYPSLLVI  741 (792)
Q Consensus       678 ------h~-~~V~sv~~--spd-g~-~Las~s~d-~I~IwDl~s~----~~~~~i~~~~~~~~~i~si~fspdg~~L~sg  741 (792)
                            .. ..+..+|+  ++. ++ ++++...+ .+..|++...    -..+.++++.. ...+..|++.+....|+++
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~  197 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIA  197 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEE
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEe
Confidence                  11 45667787  774 54 55556555 8888888432    12355666664 4578999999999999999


Q ss_pred             EcCCeEEEEECC-----CCcEEEEccc---CCCeEEEEEe--CCCC-EEEEEe-CCCcEEEeC
Q 003842          742 GCYQSLELWNMS-----ENKTMTLTAH---EGLIAALAVS--TETG-YVASAS-HDKFVKLWK  792 (792)
Q Consensus       742 s~dg~I~IwDl~-----~~~~~~~~~h---~~~V~sl~fs--pdg~-~LaSgs-~DG~I~IWd  792 (792)
                      -.+..|+.|+.+     +++.+...+.   ...+..|++-  ++++ ||++++ .+..+.|||
T Consensus       198 eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          198 EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             ETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             cccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            999888888865     3445544322   2468888884  5555 666665 466787775

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.85  E-value=0.0013  Score=68.85  Aligned_cols=227  Identities=11%  Similarity=0.040  Sum_probs=116.6

Q ss_pred             CCCEEEEEe-CC-----CeEEEEECCCCceeEE--eccCCCCEEEEEECCCCCeEEEEeCC-----CcEEEEeCCCCC--
Q 003842          523 DGKLLATGG-HD-----KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPG--  587 (792)
Q Consensus       523 dg~~Lasgs-~D-----g~I~vWdl~t~~~~~~--l~~h~~~V~~i~fspdg~~Lasgs~D-----g~V~IWdl~s~~--  587 (792)
                      ++.+++.|+ .+     ..+.+||..+.+-...  +.........+.+  ++.+++.|+.+     ..+.+||+.+..  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            344566666 32     4688899877653221  2221222222232  56677888765     468999998744  


Q ss_pred             -ceeE-EecccCCCeEEEEEcCCCCeEEEEEeCC-----CcEEEEEcCCCeeEEEee--CC-eeEEEEecCCCEEEEEEc
Q 003842          588 -YSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFK--GG-TAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       588 -~~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~--~~-~~~v~~sp~~~~lla~s~  657 (792)
                       .... .+........++.+   ++.+++.|+.+     ..+.+||+.+.+....-.  .. ....+...++..++.|+.
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~  168 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY  168 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCB
T ss_pred             eeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCC
Confidence             2211 11111122222222   34566677654     368899998876554322  11 111222224444555554


Q ss_pred             C-----CeEEEEECCCCeEEEEe--cCCCCCeEEEEEcCCCCEEEEEeC------CeEEEEECCCCCCcceEEEeecCCC
Q 003842          658 E-----NVVSILDAETQACRLSL--QGHTKPIDSVCWDPSGELLASVSE------DSVRVWTVGSGSEGECVHELSCNGN  724 (792)
Q Consensus       658 d-----g~I~i~D~~t~~~~~~l--~~h~~~V~sv~~spdg~~Las~s~------d~I~IwDl~s~~~~~~i~~~~~~~~  724 (792)
                      +     ..+.+||+.+.+-...-  ........++.  -++++++.|+.      +.+.+||+.+.. ...+..+.....
T Consensus       169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~  245 (301)
T 2vpj_A          169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDS-WTTVTSMTTPRC  245 (301)
T ss_dssp             CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE-EEEECCCSSCCB
T ss_pred             CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCc-EEECCCCCCccc
Confidence            3     46899999887544321  11111112222  25666666653      268999997642 222222222111


Q ss_pred             ceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEE
Q 003842          725 KFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMT  759 (792)
Q Consensus       725 ~i~si~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~  759 (792)
                      ....+.  -+++.++.|+.+     ..|.+||+.+.+...
T Consensus       246 ~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  283 (301)
T 2vpj_A          246 YVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWEV  283 (301)
T ss_dssp             SCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred             ceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence            222222  266667777665     368899998876543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.82  E-value=0.0047  Score=66.82  Aligned_cols=232  Identities=12%  Similarity=0.100  Sum_probs=126.5

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC-ceeE----EecccCCCeEEEEEcCC---CCeEEEEEeC-------
Q 003842          554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-YSLR----TFMGHSASVMSLDFHPN---KDDLICSCDG-------  618 (792)
Q Consensus       554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~-~~i~----~~~~h~~~V~sl~fspd---~~~ll~sgs~-------  618 (792)
                      -...+.|+|.|+++.|+++...|.|++++.+... ..+.    .+.........|+|+|+   +..++++-..       
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            3457899999999845556678999999854210 0111    11122345789999996   5555555433       


Q ss_pred             CCcEEEEEcCCC--e--eEE-EeeC---------CeeEEEEecCCCEEEEEEcC--------------CeEEEEECCCC-
Q 003842          619 DGEIRYWSINNG--S--CTR-VFKG---------GTAQMRFQPHLGRYLAAAAE--------------NVVSILDAETQ-  669 (792)
Q Consensus       619 Dg~I~iwdl~~~--~--~~~-~~~~---------~~~~v~~sp~~~~lla~s~d--------------g~I~i~D~~t~-  669 (792)
                      ...|..|++...  .  ..+ .+..         ....+.|.|++ +|+++..+              |.|.-+|.+.. 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence            235666776543  1  111 1111         13469999987 45444433              46777776532 


Q ss_pred             -------------eEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC--eEEEEECCCCCC---------------------
Q 003842          670 -------------ACRLSLQGHTKPIDSVCWDP-SGELLASVSED--SVRVWTVGSGSE---------------------  712 (792)
Q Consensus       670 -------------~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d--~I~IwDl~s~~~---------------------  712 (792)
                                   ..+.. .++ .....++|++ +|+++++-...  .=.|.-+..+..                     
T Consensus       176 p~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~  253 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK  253 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred             CCCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence                         11111 122 3467899999 66665553321  112222222111                     


Q ss_pred             -------cceEEEeecCCCceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCcEE---EEc-ccCCCeEEEEEeC
Q 003842          713 -------GECVHELSCNGNKFHSCVFHP-------TYPSLLVIGCYQSLELWNMSENKTM---TLT-AHEGLIAALAVST  774 (792)
Q Consensus       713 -------~~~i~~~~~~~~~i~si~fsp-------dg~~L~sgs~dg~I~IwDl~~~~~~---~~~-~h~~~V~sl~fsp  774 (792)
                             ...+..+. +......++|..       ++.++++.-..+.|..+++..++..   .+. .....+..+++.|
T Consensus       254 ~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p  332 (353)
T 2g8s_A          254 GEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP  332 (353)
T ss_dssp             BSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred             CCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence                   01111122 123466677764       4555555555678888888766543   222 2345799999999


Q ss_pred             CCCEEEEEe-CCCcEE
Q 003842          775 ETGYVASAS-HDKFVK  789 (792)
Q Consensus       775 dg~~LaSgs-~DG~I~  789 (792)
                      ||.++++.. .+|.|.
T Consensus       333 dG~lyv~td~~~g~I~  348 (353)
T 2g8s_A          333 DGYLYVLTDESSGELL  348 (353)
T ss_dssp             TSCEEEEECSTTEEEE
T ss_pred             CCcEEEEEeCCCCEEE
Confidence            998766543 355543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.80  E-value=0.0097  Score=64.22  Aligned_cols=190  Identities=13%  Similarity=0.096  Sum_probs=114.3

Q ss_pred             CeEEEEEcCCCCEEEEE------------eCCCeEEEEECCC--Ccee-EEecc-----CCCCEEEEEECC--CCC-eEE
Q 003842          514 KVICCHFSSDGKLLATG------------GHDKKAVLWHTDT--LKSK-TNLEE-----HSSLITDVRFSP--SMP-RLA  570 (792)
Q Consensus       514 ~V~~lafspdg~~Lasg------------s~Dg~I~vWdl~t--~~~~-~~l~~-----h~~~V~~i~fsp--dg~-~La  570 (792)
                      ....+++.++|..++++            ..+|.|.+||.++  .+.. ..+.+     .......|.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            45566778887554444            1689999999874  2221 12222     234567777755  454 344


Q ss_pred             EE-eC--CCcEEEEeCCCCCceeE---Eeccc-CCCeEEEEEcCCCCeEEEEEe-----------------CCCcEEEEE
Q 003842          571 TS-SF--DKTVRVWDADNPGYSLR---TFMGH-SASVMSLDFHPNKDDLICSCD-----------------GDGEIRYWS  626 (792)
Q Consensus       571 sg-s~--Dg~V~IWdl~s~~~~i~---~~~~h-~~~V~sl~fspd~~~ll~sgs-----------------~Dg~I~iwd  626 (792)
                      ++ ..  +..|.||+++..+....   .+.+. -...+++.+.++|. ++++..                 ..|.|+.||
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            44 33  56788988876443332   33322 24578999999876 333433                 124555555


Q ss_pred             cCCCeeEEEee--CCeeEEEEecCCCEEEEEEc-CCeEEEEECCC-CeE--EEEecCCCCCeEEEEEcC-CCCEEEEEeC
Q 003842          627 INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAET-QAC--RLSLQGHTKPIDSVCWDP-SGELLASVSE  699 (792)
Q Consensus       627 l~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t-~~~--~~~l~~h~~~V~sv~~sp-dg~~Las~s~  699 (792)
                      .  +++.....  ...+.++|+|+++.++++.. .+.|..||+.. ++.  ...+ ........+++++ +|++++++..
T Consensus       210 ~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          210 P--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             T--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred             C--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence            5  33332222  34677999999998888775 68999999863 322  2233 2345677899999 5998887765


Q ss_pred             C--eEEEEEC
Q 003842          700 D--SVRVWTV  707 (792)
Q Consensus       700 d--~I~IwDl  707 (792)
                      +  .|..|+-
T Consensus       287 ~g~~v~~~~P  296 (355)
T 3sre_A          287 NGMRIFFYDA  296 (355)
T ss_dssp             CHHHHHSCCT
T ss_pred             CceEEEEECC
Confidence            5  4555544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.78  E-value=0.052  Score=67.73  Aligned_cols=226  Identities=10%  Similarity=0.029  Sum_probs=130.7

Q ss_pred             EEEEECCC--CCeEEEEeCCCcEEEEeCCCCCc-eeEEecccCCCeEEEEEcCCCCeEEEEEeC----------------
Q 003842          558 TDVRFSPS--MPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDG----------------  618 (792)
Q Consensus       558 ~~i~fspd--g~~Lasgs~Dg~V~IWdl~s~~~-~i~~~~~h~~~V~sl~fspd~~~ll~sgs~----------------  618 (792)
                      ....|+..  ..-|+..+ ++.++|..+++... .++++ .-...+..|+++|..+.+++.++.                
T Consensus       696 ~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  773 (1158)
T 3ei3_A          696 YMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPS  773 (1158)
T ss_dssp             EEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCC
T ss_pred             eEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEE-eCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhh
Confidence            34455442  12344443 45599988865322 22333 244677888888876655443321                


Q ss_pred             --------------------------------CCcEEEEEcCCCeeEEEeeC----CeeEEE---EecC-CCEEEEEEc-
Q 003842          619 --------------------------------DGEIRYWSINNGSCTRVFKG----GTAQMR---FQPH-LGRYLAAAA-  657 (792)
Q Consensus       619 --------------------------------Dg~I~iwdl~~~~~~~~~~~----~~~~v~---~sp~-~~~lla~s~-  657 (792)
                                                      -+.|+++|-.+.+.+..+.-    .+.+++   |..+ ..++++|+. 
T Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~  853 (1158)
T 3ei3_A          774 ASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAM  853 (1158)
T ss_dssp             HHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEE
T ss_pred             hhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeee
Confidence                                            12366777777766655432    122222   2222 356777762 


Q ss_pred             ---------CCeEEEEECCCCeEEEEe-cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceE
Q 003842          658 ---------ENVVSILDAETQACRLSL-QGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFH  727 (792)
Q Consensus       658 ---------dg~I~i~D~~t~~~~~~l-~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~  727 (792)
                               .|.|++|++..++..... ...+++|++++-- +| +|+++-...|++|++...+...  ....... .+.
T Consensus       854 ~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~--~~~~~~~-~i~  928 (1158)
T 3ei3_A          854 VYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR--TECNHYN-NIM  928 (1158)
T ss_dssp             CCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE--EEEEECC-CSC
T ss_pred             cCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE--EEeeccc-cEE
Confidence                     478999998755433222 1246788888754 34 5666666689999997543222  1111111 133


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEE--ECCCCcEEEEc--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          728 SCVFHPTYPSLLVIGCYQSLELW--NMSENKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       728 si~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~~~~--~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      .+.....+++|++|..-..|.++  +...++...+.  .+..+++++.|-.++ .++.+..+|.|.++
T Consensus       929 ~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl  995 (1158)
T 3ei3_A          929 ALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVC  995 (1158)
T ss_dssp             EEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEE
T ss_pred             EEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEE
Confidence            33333457789999988877665  45555555333  456688899887554 67778889998875

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.77  E-value=0.0069  Score=64.29  Aligned_cols=206  Identities=11%  Similarity=0.101  Sum_probs=127.6

Q ss_pred             ccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCceeEEecc----cC--CCeEEEEE---cCCCCeEEEEEe---
Q 003842          551 EEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMG----HS--ASVMSLDF---HPNKDDLICSCD---  617 (792)
Q Consensus       551 ~~h~~~V~~i~fspdg~~Lasgs-~Dg~V~IWdl~s~~~~i~~~~~----h~--~~V~sl~f---spd~~~ll~sgs---  617 (792)
                      ......-.+++|.+....|+.++ ..++|..||...+......+.+    ..  ..+..|.|   .++ ..|+++..   
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~   87 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAK   87 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETT
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccc
Confidence            33444456789988666666666 7999999999753222222222    11  13679999   577 45665443   


Q ss_pred             ----------CCCcEEEEEcC---CCeeEEEee------C----------CeeEEEEecCCCEEEEEEcC-CeEEEEECC
Q 003842          618 ----------GDGEIRYWSIN---NGSCTRVFK------G----------GTAQMRFQPHLGRYLAAAAE-NVVSILDAE  667 (792)
Q Consensus       618 ----------~Dg~I~iwdl~---~~~~~~~~~------~----------~~~~v~~sp~~~~lla~s~d-g~I~i~D~~  667 (792)
                                .+..|..||+.   +++.+....      +          ....++..++++.+++.+.. +.|..++..
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence                      26789999999   777665443      1          35678999999999988888 898888887


Q ss_pred             CCeEEEEe-cC----CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee-c---CCCceEEE-EEeCCCC
Q 003842          668 TQACRLSL-QG----HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-C---NGNKFHSC-VFHPTYP  736 (792)
Q Consensus       668 t~~~~~~l-~~----h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~-~---~~~~i~si-~fspdg~  736 (792)
                      .......+ ..    .....+.|+++|+|++|++...+ .|..+|+...... .+..-. +   .......+ ..-.+|+
T Consensus       168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~  246 (334)
T 2p9w_A          168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNE  246 (334)
T ss_dssp             SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred             CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCE
Confidence            55333222 11    12236799999999988877657 8999998743110 122110 1   11223443 4445777


Q ss_pred             EEEEEE-cCCeEEEEECCCCcEE
Q 003842          737 SLLVIG-CYQSLELWNMSENKTM  758 (792)
Q Consensus       737 ~L~sgs-~dg~I~IwDl~~~~~~  758 (792)
                      .|+++. ..+.+.+.+.+..+..
T Consensus       247 vllV~~~~~~~~~l~S~DgW~sa  269 (334)
T 2p9w_A          247 SVLVGARAPYAISFRSWDNWKSA  269 (334)
T ss_dssp             EEEEEEETTEEEEEECSSTTSEE
T ss_pred             EEEEEcCCCCEEEEECCCCccee
Confidence            755554 4556666665554443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.77  E-value=9.2e-05  Score=87.94  Aligned_cols=196  Identities=11%  Similarity=-0.010  Sum_probs=117.5

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC----CceeEEeccCCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCC
Q 003842          513 SKVICCHFSSDGKLLATGG-HDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs-~Dg~I~vWdl~t----~~~~~~l~~h~~~V~~i~fspdg-~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      ..+..|+|++.+..|+.+. ..+.|+.+++..    ......+.........|++.+.+ .++++-...+.|.+++++. 
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg-  484 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-  484 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS-
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC-
Confidence            4567899998776666654 457899999875    22222222222345668887544 4455555678899999875 


Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEeCC-CcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc-CCeE
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA-ENVV  661 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D-g~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~-dg~I  661 (792)
                      ......+.........|++.|.+.+|+++-... +.|.++++........+.   .....++|++++++|+++.. .+.|
T Consensus       485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I  564 (699)
T 1n7d_A          485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  564 (699)
T ss_dssp             CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred             CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence            332223332334567899999777666554333 788888876433222222   23456999998887777665 5789


Q ss_pred             EEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003842          662 SILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG  710 (792)
Q Consensus       662 ~i~D~~t~~~~~~l~--~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~  710 (792)
                      .++|+........+.  ........|++..+ .++++.... .|..++..++
T Consensus       565 ~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             EEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred             EEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence            999987543332222  11223345566544 333343333 8989987655

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.75  E-value=0.0037  Score=65.55  Aligned_cols=224  Identities=9%  Similarity=0.038  Sum_probs=115.7

Q ss_pred             EEEEEeC--CCeEEEEECCCCceeEE--eccCCCCEEEEEECCCCCeEEEEeCC----CcEEEEeCCCCCceeE-Eeccc
Q 003842          526 LLATGGH--DKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD----KTVRVWDADNPGYSLR-TFMGH  596 (792)
Q Consensus       526 ~Lasgs~--Dg~I~vWdl~t~~~~~~--l~~h~~~V~~i~fspdg~~Lasgs~D----g~V~IWdl~s~~~~i~-~~~~h  596 (792)
                      +++.|+.  ...+.+||..+.+-...  +.........+.+  ++.+++.|+.+    ..+.+||+.+...... .+...
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            4555654  35788999887653322  2222222223333  56677888765    5688899887332111 11111


Q ss_pred             CCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcCCCeeEEEeeC--C-eeEEEEecCCCEEEEEEc---------C
Q 003842          597 SASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFKG--G-TAQMRFQPHLGRYLAAAA---------E  658 (792)
Q Consensus       597 ~~~V~sl~fspd~~~ll~sgs~D------g~I~iwdl~~~~~~~~~~~--~-~~~v~~sp~~~~lla~s~---------d  658 (792)
                      ......+.+   ++.+++.|+.+      ..+.+||+.+.+....-..  . ........++..++.++.         .
T Consensus        92 r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  168 (306)
T 3ii7_A           92 RDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVL  168 (306)
T ss_dssp             CBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEEC
T ss_pred             ccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccccc
Confidence            112222222   34576677765      4689999998775543211  1 111122224444444443         3


Q ss_pred             CeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeC------CeEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 003842          659 NVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSE------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVF  731 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~------d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~f  731 (792)
                      ..+.+||..+.+-...-.. ....-.+++.. ++++++.|+.      +.+.+||+.+.. ...+..+.........+.+
T Consensus       169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~  246 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAAV  246 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEEE
T ss_pred             ceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEEE
Confidence            4688999988754332111 11111222222 5666666553      258899987641 2222222221222223333


Q ss_pred             eCCCCEEEEEEcC-----CeEEEEECCCCcEE
Q 003842          732 HPTYPSLLVIGCY-----QSLELWNMSENKTM  758 (792)
Q Consensus       732 spdg~~L~sgs~d-----g~I~IwDl~~~~~~  758 (792)
                        ++..+++|+.+     ..|.+||..+.+..
T Consensus       247 --~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          247 --GSIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             --TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             --CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence              66677777754     47999999988755

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.74  E-value=0.06  Score=58.83  Aligned_cols=233  Identities=11%  Similarity=0.172  Sum_probs=153.6

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccC
Q 003842          518 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS  597 (792)
Q Consensus       518 lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~  597 (792)
                      .-.+|..+.||.=. ...+.|||+++...++.+.-.. .|.-=.|..+. .|+..+ +..|+-|+++....+.+.|..|.
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~  146 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecch
Confidence            44567666666654 6799999999988888776544 45555665443 444443 34599999987667777777654


Q ss_pred             ----CCeEEEEEcCCCCeEEEEEe------CCCcEEEEEcCCCeeEEEeeCCeeEEE-EecCC----CEEEEEEc----C
Q 003842          598 ----ASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHL----GRYLAAAA----E  658 (792)
Q Consensus       598 ----~~V~sl~fspd~~~ll~sgs------~Dg~I~iwdl~~~~~~~~~~~~~~~v~-~sp~~----~~lla~s~----d  658 (792)
                          ..|.....+++.+.++++|-      -.|.+.+|..+.+. ...++++..+.. +..++    ..+++-..    .
T Consensus       147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g  225 (494)
T 1bpo_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (494)
T ss_dssp             GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred             hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence                45777777888888877664      24778889887543 344555554432 32222    23444333    2


Q ss_pred             CeEEEEECCCC--------eEEEEe-cC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc
Q 003842          659 NVVSILDAETQ--------ACRLSL-QG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK  725 (792)
Q Consensus       659 g~I~i~D~~t~--------~~~~~l-~~---h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~  725 (792)
                      +.++|.++...        +....+ ..   -.+--.++..++.-.+++..+.. .|++||++++   .++.........
T Consensus       226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs~~~  302 (494)
T 1bpo_A          226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGET  302 (494)
T ss_dssp             CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSSC
T ss_pred             cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeecccCCc
Confidence            78999988542        111111 11   12334567788877777777776 9999999988   788777777777


Q ss_pred             eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          726 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       726 i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      |...+.+....-+++....|.|.-..+++..++
T Consensus       303 iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          303 IFVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             EEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred             eEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence            777777776666777778887777776665543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.69  E-value=0.028  Score=60.43  Aligned_cols=232  Identities=13%  Similarity=0.111  Sum_probs=128.3

Q ss_pred             EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-eeEEe----cccCCCeEEEEEcCC---CCeEEEEE--eC
Q 003842          549 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTF----MGHSASVMSLDFHPN---KDDLICSC--DG  618 (792)
Q Consensus       549 ~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~-~i~~~----~~h~~~V~sl~fspd---~~~ll~sg--s~  618 (792)
                      .+...-...+.|+|.|+|++|++--..|.|++++...... .+..+    .........|+|+|+   +..++++-  ..
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            3434455678999999998777766689999998654222 12222    123456889999995   34444332  24


Q ss_pred             CCcEEEEEcCCC----------eeE-EEee----CCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC-
Q 003842          619 DGEIRYWSINNG----------SCT-RVFK----GGTAQMRFQPHLGRYLAAAA-------------ENVVSILDAETQ-  669 (792)
Q Consensus       619 Dg~I~iwdl~~~----------~~~-~~~~----~~~~~v~~sp~~~~lla~s~-------------dg~I~i~D~~t~-  669 (792)
                      ++.|.-|.+..+          +.+ ..+.    .....+.|.+++..+++.+.             .|.|.-++.... 
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence            556777766542          111 1121    12345999999876666542             355555565432 


Q ss_pred             --------eEEEEecCCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCCC---------------cceEEEeecCCC
Q 003842          670 --------ACRLSLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSE---------------GECVHELSCNGN  724 (792)
Q Consensus       670 --------~~~~~l~~h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s~~~---------------~~~i~~~~~~~~  724 (792)
                              ..++. .+|. ....++|+|+|.++++-.. + .-.|.-+..+..               ...+..+..+..
T Consensus       186 p~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~  263 (347)
T 3das_A          186 APGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA  263 (347)
T ss_dssp             CTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred             cCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence                    11222 2343 3457999999887765432 2 222222222211               112222322223


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE----E-EEcccCCCeEEEEEeCCCCEEEEEe
Q 003842          725 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT----M-TLTAHEGLIAALAVSTETGYVASAS  783 (792)
Q Consensus       725 ~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~----~-~~~~h~~~V~sl~fspdg~~LaSgs  783 (792)
                      ....++|.. +..++..-..+.|..+.+.....    . .+.+....+.+|++.|||.++++.+
T Consensus       264 ap~G~~~~~-g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          264 SPSGIAYAE-GSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             CEEEEEEET-TEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCcceEEEc-CceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            456677763 44343333345676666655432    1 2334457899999999998776644

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.69  E-value=0.0066  Score=65.63  Aligned_cols=225  Identities=13%  Similarity=0.095  Sum_probs=120.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE---e----ccCCCCEEEEEECCC---CCeEEEEe-C-------
Q 003842          513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN---L----EEHSSLITDVRFSPS---MPRLATSS-F-------  574 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~---l----~~h~~~V~~i~fspd---g~~Lasgs-~-------  574 (792)
                      ...+.|+|.|||++|+++...|.|++++.+ +.....   +    .........|+|+|+   +.+|+++. .       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            457899999999844455578999999854 332111   1    122356789999996   45555443 2       


Q ss_pred             CCcEEEEeCCCCCce---eEE-ecc------cCCCeEEEEEcCCCCeEEEEEeC-------------CCcEEEEEcCCCe
Q 003842          575 DKTVRVWDADNPGYS---LRT-FMG------HSASVMSLDFHPNKDDLICSCDG-------------DGEIRYWSINNGS  631 (792)
Q Consensus       575 Dg~V~IWdl~s~~~~---i~~-~~~------h~~~V~sl~fspd~~~ll~sgs~-------------Dg~I~iwdl~~~~  631 (792)
                      ...|..|++......   ... +..      .......|+|.|++. |+++.+.             .|.|.-++....-
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence            235666776542111   111 111      111235799999984 4444432             2467777765320


Q ss_pred             ------------eEEEee---CCeeEEEEecCCCEEEEEEcCC----eEEEEECC--------C----------------
Q 003842          632 ------------CTRVFK---GGTAQMRFQPHLGRYLAAAAEN----VVSILDAE--------T----------------  668 (792)
Q Consensus       632 ------------~~~~~~---~~~~~v~~sp~~~~lla~s~dg----~I~i~D~~--------t----------------  668 (792)
                                  ....+.   .....++|.+..+.|+++....    .|.+...-        .                
T Consensus       176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~  255 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE  255 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred             CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence                        112222   1245688999667777665431    23221100        0                


Q ss_pred             -----CeEEEEecCCCCCeEEEEEcC-------CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003842          669 -----QACRLSLQGHTKPIDSVCWDP-------SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY  735 (792)
Q Consensus       669 -----~~~~~~l~~h~~~V~sv~~sp-------dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg  735 (792)
                           ..++..+..| .....++|..       +|.++++.... .|...++..+........+......+..+++.|||
T Consensus       256 ~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG  334 (353)
T 2g8s_A          256 IVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG  334 (353)
T ss_dssp             SCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred             CCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence                 0111222222 3466777764       46666665555 78888876431111111122334578999999999


Q ss_pred             CEEEE
Q 003842          736 PSLLV  740 (792)
Q Consensus       736 ~~L~s  740 (792)
                      ..+++
T Consensus       335 ~lyv~  339 (353)
T 2g8s_A          335 YLYVL  339 (353)
T ss_dssp             CEEEE
T ss_pred             cEEEE
Confidence            84444

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.64  E-value=0.014  Score=61.55  Aligned_cols=234  Identities=6%  Similarity=-0.045  Sum_probs=134.4

Q ss_pred             cCCCCEEEEEe--CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC--------------CcEEEEeCC
Q 003842          521 SSDGKLLATGG--HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--------------KTVRVWDAD  584 (792)
Q Consensus       521 spdg~~Lasgs--~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D--------------g~V~IWdl~  584 (792)
                      +.+|.+|+...  .++.|+..+.+... ...+...    .+--|++++.+|+.+...              ..|+..+++
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            35677777664  35667777765443 3334322    133557788888777543              356666776


Q ss_pred             CCCceeEEecccCCCeEEEEEcCCCCeEEEEE---eCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEc-CCe
Q 003842          585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSC---DGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-ENV  660 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sg---s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~-dg~  660 (792)
                      ...  ...+...  .  +..|+++++.++++-   ..+..|+..++......+......  ..++++++.|+..+. ...
T Consensus        97 g~~--~~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~  168 (302)
T 3s25_A           97 GHG--STVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPKNGQ  168 (302)
T ss_dssp             SCC--CEEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEECTTTCC
T ss_pred             CCc--ceEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCCCce
Confidence            532  2333221  1  235677788777665   345567777776544444444333  456888888887766 578


Q ss_pred             EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003842          661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~  737 (792)
                      |++.++..+.....+.+   ... ..++|++.+|+-...+   .|..-++.....    ..+.  ...+  ..|+|++.+
T Consensus       169 Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~----~~Lt--~~~~--~~~~~~g~~  236 (302)
T 3s25_A          169 LYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP----VVLT--EANI--EHYNVYGSL  236 (302)
T ss_dssp             EEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC----EECS--CSCE--EEEEEETTE
T ss_pred             EEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe----EEEe--CCCc--ceEEECCCE
Confidence            99999887755444432   222 3466889888876543   566666654422    1221  1222  348888998


Q ss_pred             EEEEEc--CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 003842          738 LLVIGC--YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS  783 (792)
Q Consensus       738 L~sgs~--dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs  783 (792)
                      |+.+..  .+.|...+++......+...  .+..+  ++.+.+|+-..
T Consensus       237 Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~~i--~i~~d~Iy~td  280 (302)
T 3s25_A          237 IFYQRGGDNPALCVVKNDGTGFKELAKG--EFCNI--NVTSQYVYFTD  280 (302)
T ss_dssp             EEEEECSSSCEEEEEETTSCCCEEEEES--CEEEE--EECSSEEEEEE
T ss_pred             EEEEECCCCcEEEEEECCCCccEEeeCC--ccceE--EEeCCEEEEEE
Confidence            887643  35788888877554433322  23333  33445554443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.56  E-value=0.006  Score=63.84  Aligned_cols=225  Identities=14%  Similarity=0.065  Sum_probs=113.9

Q ss_pred             CCEEEEEeCC----CeEEEEECCCCceeEE--eccCCCCEEEEEECCCCCeEEEEeCCC-----cEEEEeCCCCCceeEE
Q 003842          524 GKLLATGGHD----KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFDK-----TVRVWDADNPGYSLRT  592 (792)
Q Consensus       524 g~~Lasgs~D----g~I~vWdl~t~~~~~~--l~~h~~~V~~i~fspdg~~Lasgs~Dg-----~V~IWdl~s~~~~i~~  592 (792)
                      +.+++.|+.+    ..+.+||+.+.+-...  +......-..+.+  ++.+++.|+.++     .+.+||..+..  ...
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~   91 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQ--WTS   91 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCc--eee
Confidence            3455556543    4588899887653322  1111111122233  666778887653     58889987632  222


Q ss_pred             ecc---cCCCeEEEEEcCCCCeEEEEEeCCC-----cEEEEEcCCCeeEEEee--CCe-eEEEEecCCCEEEEEEc----
Q 003842          593 FMG---HSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNGSCTRVFK--GGT-AQMRFQPHLGRYLAAAA----  657 (792)
Q Consensus       593 ~~~---h~~~V~sl~fspd~~~ll~sgs~Dg-----~I~iwdl~~~~~~~~~~--~~~-~~v~~sp~~~~lla~s~----  657 (792)
                      +..   .......+.+   ++.+++.|+.++     .+.+||+.+.+....-.  ... .......++..++.|+.    
T Consensus        92 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  168 (302)
T 2xn4_A           92 VANMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVAS  168 (302)
T ss_dssp             ECCCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTT
T ss_pred             CCCCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCC
Confidence            221   1111222222   245666776553     57889988876554321  111 11112224344444443    


Q ss_pred             ---CCeEEEEECCCCeEEEE--ecCCCCCeEEEEEcCCCCEEEEEeC------CeEEEEECCCCCCcceEEEeecCCCce
Q 003842          658 ---ENVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSE------DSVRVWTVGSGSEGECVHELSCNGNKF  726 (792)
Q Consensus       658 ---dg~I~i~D~~t~~~~~~--l~~h~~~V~sv~~spdg~~Las~s~------d~I~IwDl~s~~~~~~i~~~~~~~~~i  726 (792)
                         ...+.+||+.+.+-...  +....... +++. -++++++.|+.      +.+.+||+.+. ....+..+.......
T Consensus       169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~r~~~  245 (302)
T 2xn4_A          169 RQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTN-AWRQVADMNMCRRNA  245 (302)
T ss_dssp             TEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTT-EEEEECCCSSCCBSC
T ss_pred             CccccEEEEEeCCCCcEEECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCC-CEeeCCCCCCccccC
Confidence               24688999988754332  11111112 2222 25666666653      25889998764 222222222111111


Q ss_pred             EEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEE
Q 003842          727 HSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTL  760 (792)
Q Consensus       727 ~si~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~~  760 (792)
                      . ++ .-++..++.|+.++     .|.+||+.+.+...+
T Consensus       246 ~-~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  282 (302)
T 2xn4_A          246 G-VC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV  282 (302)
T ss_dssp             E-EE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             e-EE-EECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence            2 22 23666777777653     589999998876544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.56  E-value=0.041  Score=59.07  Aligned_cols=236  Identities=10%  Similarity=0.046  Sum_probs=125.4

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE--Ee----ccCCCCEEEEEECCC---CCeEEEE--
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NL----EEHSSLITDVRFSPS---MPRLATS--  572 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~--~l----~~h~~~V~~i~fspd---g~~Lasg--  572 (792)
                      .+..+-..-...+.|+|.|||+++++--..|.|++++..+++...  .+    .........|+|+|+   +.+|++.  
T Consensus        23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            334444555678999999999977776558999999876655422  12    123567899999995   3445443  


Q ss_pred             -eCCCcEEEEeCCCC---------Cce-eEEec-ccCCCeEEEEEcCCCCeEEEEEe------------CCCcEEEEEcC
Q 003842          573 -SFDKTVRVWDADNP---------GYS-LRTFM-GHSASVMSLDFHPNKDDLICSCD------------GDGEIRYWSIN  628 (792)
Q Consensus       573 -s~Dg~V~IWdl~s~---------~~~-i~~~~-~h~~~V~sl~fspd~~~ll~sgs------------~Dg~I~iwdl~  628 (792)
                       ..++.|.-|.+...         .+. +..+. ........|.|.|++..++.+|+            ..|.|.-++..
T Consensus       103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d  182 (347)
T 3das_A          103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD  182 (347)
T ss_dssp             CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred             cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence             24455666766541         111 11221 11123457999999864443332            13555555544


Q ss_pred             CCe-------eEEEeeC---CeeEEEEecCCCEEEEEEc--CCeEEEEECCCCe------------------EEEEecCC
Q 003842          629 NGS-------CTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQA------------------CRLSLQGH  678 (792)
Q Consensus       629 ~~~-------~~~~~~~---~~~~v~~sp~~~~lla~s~--dg~I~i~D~~t~~------------------~~~~l~~h  678 (792)
                      ..-       ....+..   ....++|.++ +.|+++..  ++.-.|.-+..+.                  ++..+..+
T Consensus       183 G~ip~~nPf~~~~i~a~G~RNp~Gla~dp~-G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~  261 (347)
T 3das_A          183 GEPAPGNPFPGSPVYSYGHRNVQGLAWDDK-QRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD  261 (347)
T ss_dssp             SSBCTTCSSTTCCEEEBCCSBCCEEEECTT-CCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred             CCccCCCCCCCCeEEeeCCCCcceEEECCC-CCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC
Confidence            220       0112221   2456889886 44555443  2222222111111                  12222222


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003842          679 TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVI  741 (792)
Q Consensus       679 ~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~-~~~i~~~~~~~~~i~si~fspdg~~L~sg  741 (792)
                      ......++|. +|.+++..-.. .|....+..... .+....+......+..+++.|||..+++.
T Consensus       262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t  325 (347)
T 3das_A          262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT  325 (347)
T ss_dssp             TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred             CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence            2344566665 45666655555 666666654321 12223333445678899999998655444

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.49  E-value=0.022  Score=60.08  Aligned_cols=178  Identities=8%  Similarity=0.019  Sum_probs=109.4

Q ss_pred             EEEEcCCCCEEEEEeCC--------------CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe--CCCcEEE
Q 003842          517 CCHFSSDGKLLATGGHD--------------KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS--FDKTVRV  580 (792)
Q Consensus       517 ~lafspdg~~Lasgs~D--------------g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs--~Dg~V~I  580 (792)
                      |--|+++|++|+.+...              ..|+..+++..+... +....    +..|++++++|+...  .++.-.|
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceE
Confidence            34567888888877543              467778887665333 32221    226677888888776  3444444


Q ss_pred             EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcC--
Q 003842          581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE--  658 (792)
Q Consensus       581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~d--  658 (792)
                      |.+...+.....+..+..    +.|+++++.++++......|.+.++..+.....+.+... ..+.|++++++....+  
T Consensus       132 y~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~-~~~~P~g~~iy~t~~~~~  206 (302)
T 3s25_A          132 YRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCY-KPVVLDDTNVYYMDVNRD  206 (302)
T ss_dssp             EEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCEE-EEEEEETTEEEEEEGGGT
T ss_pred             EEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCcc-ceeeecCCEEEEEEcCCC
Confidence            444333444445544433    456777888887766578899999887766655554433 4466899998887654  


Q ss_pred             CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCC
Q 003842          659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGS  709 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s  709 (792)
                      ..|...++...... .+..  ..+  ..|+|++.+|+.+...   .|...++.-
T Consensus       207 ~~I~~~~ldG~~~~-~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          207 NAIVHVNINNPNPV-VLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             TEEEEECSSSCCCE-ECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             cEEEEEECCCCCeE-EEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence            36777777765432 2221  233  3477888888776432   566666643

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.40  E-value=0.01  Score=62.16  Aligned_cols=208  Identities=10%  Similarity=0.064  Sum_probs=106.3

Q ss_pred             CeEEEEeC--CCcEEEEeCCCCCceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCC----CcEEEEEcCCCeeEEEee
Q 003842          567 PRLATSSF--DKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGD----GEIRYWSINNGSCTRVFK  637 (792)
Q Consensus       567 ~~Lasgs~--Dg~V~IWdl~s~~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~D----g~I~iwdl~~~~~~~~~~  637 (792)
                      .+++.|+.  ...+.+||..+...  ..+.   ........+.+   ++.+++.|+.+    ..+.+||+.+.+....-.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSW--TDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEE--EECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred             eEEEEeCCCCCceEEEecCCCCCE--ecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence            35556654  35688899886322  2221   11112222222   34577777755    678899999887554322


Q ss_pred             C--C-eeEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEEe---------
Q 003842          638 G--G-TAQMRFQPHLGRYLAAAAE------NVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVS---------  698 (792)
Q Consensus       638 ~--~-~~~v~~sp~~~~lla~s~d------g~I~i~D~~t~~~~~~l~~h-~~~V~sv~~spdg~~Las~s---------  698 (792)
                      .  . ........++..++.|+.+      ..+.+||..+.+-...-... ...-.+++. -++++++.|+         
T Consensus        88 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~  166 (306)
T 3ii7_A           88 PPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGR  166 (306)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCE
T ss_pred             CCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccc
Confidence            1  1 1112222244455555544      46899999887543321111 111112222 2566666665         


Q ss_pred             -CCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEEccc---CCCeEE
Q 003842          699 -EDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAH---EGLIAA  769 (792)
Q Consensus       699 -~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~~~~h---~~~V~s  769 (792)
                       .+.+.+||+.+. ....+..+..... -.+++.. +++.+++|+.+     ..|.+||+.+.+...+...   .....+
T Consensus       167 ~~~~~~~yd~~~~-~W~~~~~~p~~r~-~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  243 (306)
T 3ii7_A          167 VLNSCEVYDPATE-TWTELCPMIEARK-NHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC  243 (306)
T ss_dssp             ECCCEEEEETTTT-EEEEECCCSSCCB-SCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred             ccceEEEeCCCCC-eEEECCCccchhh-cceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence             235889998764 1222222221111 1222222 56666666543     4689999998876644321   112223


Q ss_pred             EEEeCCCCEEEEEeCC
Q 003842          770 LAVSTETGYVASASHD  785 (792)
Q Consensus       770 l~fspdg~~LaSgs~D  785 (792)
                      +.+  ++++++.|+.+
T Consensus       244 ~~~--~~~i~v~GG~~  257 (306)
T 3ii7_A          244 AAV--GSIVYVLAGFQ  257 (306)
T ss_dssp             EEE--TTEEEEEECBC
T ss_pred             EEE--CCEEEEEeCcC
Confidence            333  67788888765

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.40  E-value=0.0052  Score=64.19  Aligned_cols=210  Identities=13%  Similarity=0.074  Sum_probs=105.8

Q ss_pred             CCCeEEEEe-CC-----CcEEEEeCCCCCceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCC-----CcEEEEEcCCC
Q 003842          565 SMPRLATSS-FD-----KTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNG  630 (792)
Q Consensus       565 dg~~Lasgs-~D-----g~V~IWdl~s~~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~D-----g~I~iwdl~~~  630 (792)
                      ++.+++.|+ .+     ..+.+||+.+..  ...+.   ........+.+   ++.+++.|+.+     ..+.+||+.+.
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~   88 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQE--WSFLPSITRKRRYVASVSL---HDRIYVIGGYDGRSRLSSVECLDYTAD   88 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCe--EEeCCCCChhhccccEEEE---CCEEEEEcCCCCCccCceEEEEECCCC
Confidence            444666666 32     358888887632  22221   11111222222   24577677754     46899999887


Q ss_pred             e---eEEEee--CC-eeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEE--EecCCCCCeEEEEEcCCCCEEEEE
Q 003842          631 S---CTRVFK--GG-TAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASV  697 (792)
Q Consensus       631 ~---~~~~~~--~~-~~~v~~sp~~~~lla~s~d-----g~I~i~D~~t~~~~~--~l~~h~~~V~sv~~spdg~~Las~  697 (792)
                      +   ....-.  .. ........++..++.|+.+     ..+.+||..+.+-..  .+....... +++. -++++++.|
T Consensus        89 ~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~G  166 (301)
T 2vpj_A           89 EDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA-GLVV-ASGVIYCLG  166 (301)
T ss_dssp             TTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC-EEEE-ETTEEEEEC
T ss_pred             CCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc-eEEE-ECCEEEEEC
Confidence            6   433321  11 1111222244444455432     478999998865332  222111112 2222 256666666


Q ss_pred             eC------CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEEcccC--
Q 003842          698 SE------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHE--  764 (792)
Q Consensus       698 s~------d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~~~~h~--  764 (792)
                      +.      +.+.+||+.+. ....+..+.........+.  -++..+++|+.+     ..|.+||+.+.+...+....  
T Consensus       167 G~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~  243 (301)
T 2vpj_A          167 GYDGLNILNSVEKYDPHTG-HWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP  243 (301)
T ss_dssp             CBCSSCBCCCEEEEETTTT-EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred             CCCCCcccceEEEEeCCCC-cEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc
Confidence            53      25889998764 2222222221111122222  256666777654     47999999988766543211  


Q ss_pred             -CCeEEEEEeCCCCEEEEEeCCC
Q 003842          765 -GLIAALAVSTETGYVASASHDK  786 (792)
Q Consensus       765 -~~V~sl~fspdg~~LaSgs~DG  786 (792)
                       ....++.  -++++++.|+.++
T Consensus       244 r~~~~~~~--~~~~i~v~GG~~~  264 (301)
T 2vpj_A          244 RCYVGATV--LRGRLYAIAGYDG  264 (301)
T ss_dssp             CBSCEEEE--ETTEEEEECCBCS
T ss_pred             ccceeEEE--ECCEEEEEcCcCC
Confidence             1112222  2677777777653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.36  E-value=0.013  Score=61.29  Aligned_cols=212  Identities=9%  Similarity=0.004  Sum_probs=105.6

Q ss_pred             CCeEEEEeCC----CcEEEEeCCCCCceeEEecccCC--CeEEEEEcCCCCeEEEEEeCC-----CcEEEEEcCCCeeEE
Q 003842          566 MPRLATSSFD----KTVRVWDADNPGYSLRTFMGHSA--SVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTR  634 (792)
Q Consensus       566 g~~Lasgs~D----g~V~IWdl~s~~~~i~~~~~h~~--~V~sl~fspd~~~ll~sgs~D-----g~I~iwdl~~~~~~~  634 (792)
                      +.+++.|+.+    ..+.+||+.+..  ...+.....  .-.+++..  ++.+++.|+.+     ..+.+||+.+.+...
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~   91 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEER--WHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS   91 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCc--EeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceee
Confidence            3455555543    357888887632  222211111  11122222  34577677654     358899998876554


Q ss_pred             EeeC--C-eeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeC------
Q 003842          635 VFKG--G-TAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSE------  699 (792)
Q Consensus       635 ~~~~--~-~~~v~~sp~~~~lla~s~d-----g~I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~------  699 (792)
                      .-..  . ........++..+++|+.+     ..+.+||+.+.+-...-.. ....-.+++. -++++++.|+.      
T Consensus        92 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~  170 (302)
T 2xn4_A           92 VANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQ  170 (302)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTE
T ss_pred             CCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCc
Confidence            3221  1 1111222344555666654     3688899887754332111 1111122222 25666666542      


Q ss_pred             --CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEEcccCCC--eEEE
Q 003842          700 --DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHEGL--IAAL  770 (792)
Q Consensus       700 --d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~~~~h~~~--V~sl  770 (792)
                        +.+.+||+.+.. ...+..+....... +++. -++..+++|+.+     ..+.+||+.+.+...+......  -.++
T Consensus       171 ~~~~~~~yd~~~~~-W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~  247 (302)
T 2xn4_A          171 CLSTVECYNATTNE-WTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV  247 (302)
T ss_dssp             ECCCEEEEETTTTE-EEEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             cccEEEEEeCCCCc-EEECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeE
Confidence              258899987641 22222222111112 2222 256667777654     3799999998876654422111  1122


Q ss_pred             EEeCCCCEEEEEeCCC
Q 003842          771 AVSTETGYVASASHDK  786 (792)
Q Consensus       771 ~fspdg~~LaSgs~DG  786 (792)
                      + .-++++++.|+.++
T Consensus       248 ~-~~~~~i~v~GG~~~  262 (302)
T 2xn4_A          248 C-AVNGLLYVVGGDDG  262 (302)
T ss_dssp             E-EETTEEEEECCBCS
T ss_pred             E-EECCEEEEECCcCC
Confidence            2 23677777887654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.35  E-value=0.0059  Score=64.26  Aligned_cols=227  Identities=9%  Similarity=0.009  Sum_probs=114.9

Q ss_pred             CCCCEEEEEeCC----CeEEEEECCCCceeEE--eccCCCCEEEEEECCCCCeEEEEeC----C-----CcEEEEeCCCC
Q 003842          522 SDGKLLATGGHD----KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSF----D-----KTVRVWDADNP  586 (792)
Q Consensus       522 pdg~~Lasgs~D----g~I~vWdl~t~~~~~~--l~~h~~~V~~i~fspdg~~Lasgs~----D-----g~V~IWdl~s~  586 (792)
                      -++.+++.|+.+    ..+.+||..+.+-...  +.........+.+  ++.+++.|+.    +     ..+.+||+.+.
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            355677777642    4688999887653322  1111111222222  5667777776    2     45888998763


Q ss_pred             CceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCC-----CcEEEEEcCCCeeEEEee--CCe-eEEEEecCCCEEEEE
Q 003842          587 GYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFK--GGT-AQMRFQPHLGRYLAA  655 (792)
Q Consensus       587 ~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~--~~~-~~v~~sp~~~~lla~  655 (792)
                      .  ...+.   ........+.+   +..+++.|+.+     ..+.+||+.+.+....-.  ... .......++..++.|
T Consensus       101 ~--W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G  175 (308)
T 1zgk_A          101 Q--WSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVG  175 (308)
T ss_dssp             E--EEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred             e--EeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEe
Confidence            2  22221   11112222223   24566666643     468899998876544321  111 111112244444555


Q ss_pred             EcC-----CeEEEEECCCCeEEEE--ecCCCCCeEEEEEcCCCCEEEEEeC------CeEEEEECCCCCCcceEEEeecC
Q 003842          656 AAE-----NVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSE------DSVRVWTVGSGSEGECVHELSCN  722 (792)
Q Consensus       656 s~d-----g~I~i~D~~t~~~~~~--l~~h~~~V~sv~~spdg~~Las~s~------d~I~IwDl~s~~~~~~i~~~~~~  722 (792)
                      +.+     ..+.+||+.+.+-...  +....... +++.. ++++++.|+.      +.+.+||+.+.. ...+..+...
T Consensus       176 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~  252 (308)
T 1zgk_A          176 GFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET-WTFVAPMKHR  252 (308)
T ss_dssp             CBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE-EEECCCCSSC
T ss_pred             CCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc-EEECCCCCCC
Confidence            443     4689999987754322  11111112 22222 5666666653      258999987641 2222222211


Q ss_pred             CCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEE
Q 003842          723 GNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTL  760 (792)
Q Consensus       723 ~~~i~si~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~~  760 (792)
                      .... +++. -+++.++.|+.+     ..|.+||+.+.+...+
T Consensus       253 r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  293 (308)
T 1zgk_A          253 RSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV  293 (308)
T ss_dssp             CBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred             ccce-EEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence            1112 2222 256667777654     3688999988775543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.34  E-value=0.033  Score=58.52  Aligned_cols=225  Identities=8%  Similarity=0.011  Sum_probs=113.8

Q ss_pred             EEEEEeCCCeEEEEECCCCceeE-EeccCCCCEEEEEECCCCCeEEEEeC----C-------CcEEEEeCCCCCceeEEe
Q 003842          526 LLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSF----D-------KTVRVWDADNPGYSLRTF  593 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~~~~-~l~~h~~~V~~i~fspdg~~Lasgs~----D-------g~V~IWdl~s~~~~i~~~  593 (792)
                      +++.|+  ..+.+||..+.+-.. .+..........+...++.+++.|+.    +       ..+.+||..+..  ...+
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~   82 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE--WLGM   82 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE--EEEC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe--EEEC
Confidence            344555  579999998876432 22222223333344457778888874    1       127788887632  2222


Q ss_pred             cccCCCe--EEEEEcCCCCeEEEEEeCC--------CcEEEEEcCCCeeEEEee--CC-eeEEEEecCCCEEEEEEc---
Q 003842          594 MGHSASV--MSLDFHPNKDDLICSCDGD--------GEIRYWSINNGSCTRVFK--GG-TAQMRFQPHLGRYLAAAA---  657 (792)
Q Consensus       594 ~~h~~~V--~sl~fspd~~~ll~sgs~D--------g~I~iwdl~~~~~~~~~~--~~-~~~v~~sp~~~~lla~s~---  657 (792)
                      ......-  .+++..  ++.+++.|+.+        ..+.+||+.+.+....-.  .. ....+...++..++.|+.   
T Consensus        83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  160 (315)
T 4asc_A           83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSD  160 (315)
T ss_dssp             CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTT
T ss_pred             CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCC
Confidence            2111111  122222  34566677632        468999998876543321  11 111222234444555554   


Q ss_pred             ---CCeEEEEECCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeecCCCceE
Q 003842          658 ---ENVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFH  727 (792)
Q Consensus       658 ---dg~I~i~D~~t~~~~~~l~~h-~~~V~sv~~spdg~~Las~s~d------~I~IwDl~s~~~~~~i~~~~~~~~~i~  727 (792)
                         -..+.+||..+.+-...-... ...-.+++. -++++++.|+.+      .+.+||+.+. ....+..+....... 
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~-  237 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDN-KWAPFEAFPQERSSL-  237 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTT-EEEEECCCSSCCBSC-
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCC-eEEECCCCCCcccce-
Confidence               247899999887533221111 111112222 256666666543      4788898764 222222222111112 


Q ss_pred             EEEEeCCCCEEEEEEcC--------------CeEEEEECCCCcEEEE
Q 003842          728 SCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTL  760 (792)
Q Consensus       728 si~fspdg~~L~sgs~d--------------g~I~IwDl~~~~~~~~  760 (792)
                      +++. -+++.+++|+.+              ..|.+||+.+.+...+
T Consensus       238 ~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          238 SLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             EEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             eEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            2222 256667777653              2478899988876544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.27  E-value=0.12  Score=57.78  Aligned_cols=105  Identities=10%  Similarity=0.152  Sum_probs=62.1

Q ss_pred             CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-eeEEecc------cCCCeEEEEEcCC---CCeEEEEEeC----
Q 003842          553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMG------HSASVMSLDFHPN---KDDLICSCDG----  618 (792)
Q Consensus       553 h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~-~i~~~~~------h~~~V~sl~fspd---~~~ll~sgs~----  618 (792)
                      .-...+.|+|.|+|+++++-...+.|++++..++.. .+..+..      ....+..|+|+|+   +..++++-+.    
T Consensus        25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            345678999999998777665555788887654222 1222221      2456779999996   5555555432    


Q ss_pred             --------CCcEEEEEcCCC--ee---EEE---ee----CCeeEEEEecCCCEEEEEEc
Q 003842          619 --------DGEIRYWSINNG--SC---TRV---FK----GGTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       619 --------Dg~I~iwdl~~~--~~---~~~---~~----~~~~~v~~sp~~~~lla~s~  657 (792)
                              ...|..|++...  ..   ...   +.    .....+.|.+++..+++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                    235666665432  11   111   21    12466999999876666553

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.27  E-value=0.012  Score=64.30  Aligned_cols=132  Identities=17%  Similarity=0.197  Sum_probs=88.5

Q ss_pred             CCeEEEEECCCCeEEEEecCC----CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCc---------ceEEEeec---
Q 003842          658 ENVVSILDAETQACRLSLQGH----TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG---------ECVHELSC---  721 (792)
Q Consensus       658 dg~I~i~D~~t~~~~~~l~~h----~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~---------~~i~~~~~---  721 (792)
                      ++.|+..++......+.+...    -..|..+..+|+|++||..+...|.|..+..+...         ...+.+..   
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~  119 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE  119 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence            466666665533222222211    23578899999999999999889999888733210         11223322   


Q ss_pred             ---CCCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCCc--EE---------EEcccCCCeEEEEEeCCCCEEEEEe-
Q 003842          722 ---NGNKFHSCVFHPT---YPSLLVIGCYQSLELWNMSENK--TM---------TLTAHEGLIAALAVSTETGYVASAS-  783 (792)
Q Consensus       722 ---~~~~i~si~fspd---g~~L~sgs~dg~I~IwDl~~~~--~~---------~~~~h~~~V~sl~fspdg~~LaSgs-  783 (792)
                         ....|..+.|||-   +..|++...|+.|++||+....  +.         ........|.+++|..++-.|...+ 
T Consensus       120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~  199 (452)
T 3pbp_A          120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNT  199 (452)
T ss_dssp             C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEEC
T ss_pred             ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEec
Confidence               2467999999995   5689999999999999998622  11         1122336789999999887666655 


Q ss_pred             -CCCcEE
Q 003842          784 -HDKFVK  789 (792)
Q Consensus       784 -~DG~I~  789 (792)
                       ++|.|+
T Consensus       200 t~~GDIY  206 (452)
T 3pbp_A          200 TEGGDIF  206 (452)
T ss_dssp             TTSCEEE
T ss_pred             CCCCCEE
Confidence             778876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.25  E-value=6.2e-05  Score=89.83  Aligned_cols=14  Identities=21%  Similarity=0.294  Sum_probs=2.3

Q ss_pred             cccCCCeEEEEEeC
Q 003842          761 TAHEGLIAALAVST  774 (792)
Q Consensus       761 ~~h~~~V~sl~fsp  774 (792)
                      ..|-.-+..+.|.+
T Consensus       706 SDH~pV~a~f~l~~  719 (727)
T 4b8c_D          706 SDHIPLLARFEFMK  719 (727)
T ss_dssp             SSBCC---------
T ss_pred             CCceeEEEEEEEec
Confidence            34555555555544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.17  E-value=0.051  Score=57.13  Aligned_cols=224  Identities=10%  Similarity=0.028  Sum_probs=110.7

Q ss_pred             EEEEEeCCCeEEEEECCCCceeE-EeccCCCCEEEEEECCCCCeEEEEeC----CC-------cEEEEeCCCCCceeEEe
Q 003842          526 LLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSF----DK-------TVRVWDADNPGYSLRTF  593 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~~~~-~l~~h~~~V~~i~fspdg~~Lasgs~----Dg-------~V~IWdl~s~~~~i~~~  593 (792)
                      +++.|+.  .+.+||..+.+-.. .+..........+...++.+++.|+.    ++       .+.+||..+..  ...+
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~   93 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE--WVGL   93 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE--EEEC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc--EEEC
Confidence            3444443  47889988776443 12211122233334557778888873    12       16778877532  2222


Q ss_pred             cc---cCCCeEEEEEcCCCCeEEEEEeCC-------CcEEEEEcCCCeeEEEee--CCe-eEEEEecCCCEEEEEEc---
Q 003842          594 MG---HSASVMSLDFHPNKDDLICSCDGD-------GEIRYWSINNGSCTRVFK--GGT-AQMRFQPHLGRYLAAAA---  657 (792)
Q Consensus       594 ~~---h~~~V~sl~fspd~~~ll~sgs~D-------g~I~iwdl~~~~~~~~~~--~~~-~~v~~sp~~~~lla~s~---  657 (792)
                      ..   .......+.+   ++.+++.|+.+       ..+.+||+.+.+....-.  ... .......++..++.|+.   
T Consensus        94 ~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  170 (318)
T 2woz_A           94 PPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDD  170 (318)
T ss_dssp             SCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESS
T ss_pred             CCCCccccccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCC
Confidence            21   1111222222   34566677654       358889998876554321  111 11122234444455543   


Q ss_pred             ---CCeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeecCCCceE
Q 003842          658 ---ENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFH  727 (792)
Q Consensus       658 ---dg~I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d------~I~IwDl~s~~~~~~i~~~~~~~~~i~  727 (792)
                         ...+.+||..+.+-...-.. ....-.+++. -++++++.|+.+      .+.+||+.+.. ...+..+....... 
T Consensus       171 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~-  247 (318)
T 2woz_A          171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQERSSI-  247 (318)
T ss_dssp             SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSCCBSC-
T ss_pred             CCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe-EEECCCCCCcccce-
Confidence               24699999988754332111 1111122222 256666666532      57789987642 22222222211111 


Q ss_pred             EEEEeCCCCEEEEEEcC--------------CeEEEEECCCCcEEEE
Q 003842          728 SCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTL  760 (792)
Q Consensus       728 si~fspdg~~L~sgs~d--------------g~I~IwDl~~~~~~~~  760 (792)
                      +++ .-++..++.|+.+              ..|.+||+.+.+...+
T Consensus       248 ~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          248 SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            222 2355666666643              3688999988776544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.12  E-value=0.014  Score=62.46  Aligned_cols=228  Identities=10%  Similarity=-0.015  Sum_probs=112.6

Q ss_pred             CCCEEEEEeC-CCeEEEEECCC--C--ceeEEec-cCCCCEEEEEECCCCCeEEEEeC-C---------CcEEEEeCCCC
Q 003842          523 DGKLLATGGH-DKKAVLWHTDT--L--KSKTNLE-EHSSLITDVRFSPSMPRLATSSF-D---------KTVRVWDADNP  586 (792)
Q Consensus       523 dg~~Lasgs~-Dg~I~vWdl~t--~--~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~-D---------g~V~IWdl~s~  586 (792)
                      ++++++.|+. ...+.+||+.+  .  ..+..+. .......++.+  ++++++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            5666666664 35688999864  2  2222222 11222223333  5667777776 2         46889998863


Q ss_pred             CceeEEecc---cCCCeEEEEEcCCCCeEEEEEeCC---------------------------------------CcEEE
Q 003842          587 GYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGD---------------------------------------GEIRY  624 (792)
Q Consensus       587 ~~~i~~~~~---h~~~V~sl~fspd~~~ll~sgs~D---------------------------------------g~I~i  624 (792)
                      .  ...+..   ....-.+++. . ++.+++.|+.+                                       ..+.+
T Consensus        97 ~--W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  172 (357)
T 2uvk_A           97 S--WVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS  172 (357)
T ss_dssp             E--EEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred             c--EEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence            2  222211   1111122222 2 34677777754                                       57899


Q ss_pred             EEcCCCeeEEEeeCC---ee-EEEEecCCCEEEEEEc------CCeEEEEEC--CCCeEEE--EecCCCCCeEEEEEcCC
Q 003842          625 WSINNGSCTRVFKGG---TA-QMRFQPHLGRYLAAAA------ENVVSILDA--ETQACRL--SLQGHTKPIDSVCWDPS  690 (792)
Q Consensus       625 wdl~~~~~~~~~~~~---~~-~v~~sp~~~~lla~s~------dg~I~i~D~--~t~~~~~--~l~~h~~~V~sv~~spd  690 (792)
                      ||+.+.+....-..+   .. ..+...++..++.|+.      ...+.+||+  ++.+-..  .+........+.+...+
T Consensus       173 yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~  252 (357)
T 2uvk_A          173 FDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISN  252 (357)
T ss_dssp             EETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEET
T ss_pred             EeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEEC
Confidence            999887755442211   11 1222223344444442      346777887  4433221  11111111121122235


Q ss_pred             CCEEEEEeC-----------------------CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC--
Q 003842          691 GELLASVSE-----------------------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ--  745 (792)
Q Consensus       691 g~~Las~s~-----------------------d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg--  745 (792)
                      +++++.|+.                       ..+.+||+.+. ....+..+.......  .++.-+++.++.|+.++  
T Consensus       253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~--~~~~~~~~i~v~GG~~~~~  329 (357)
T 2uvk_A          253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG-KWDKSGELSQGRAYG--VSLPWNNSLLIIGGETAGG  329 (357)
T ss_dssp             TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSS--EEEEETTEEEEEEEECGGG
T ss_pred             CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC-ceeeCCCCCCCcccc--eeEEeCCEEEEEeeeCCCC
Confidence            666666652                       14778998764 334444443332222  22334677888888653  


Q ss_pred             ----eEEEEECCCCcEEE
Q 003842          746 ----SLELWNMSENKTMT  759 (792)
Q Consensus       746 ----~I~IwDl~~~~~~~  759 (792)
                          .|.++++++++.+.
T Consensus       330 ~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          330 KAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             CEEEEEEEEEC-CCSCEE
T ss_pred             CEeeeEEEEEEcCcEeEe
Confidence                57777998888774

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.10  E-value=0.045  Score=57.53  Aligned_cols=210  Identities=9%  Similarity=-0.029  Sum_probs=103.6

Q ss_pred             eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeC----C-------CcEEEEEcCCCeeEEEe
Q 003842          568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG----D-------GEIRYWSINNGSCTRVF  636 (792)
Q Consensus       568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~----D-------g~I~iwdl~~~~~~~~~  636 (792)
                      +++.|+  ..+.+||..+.......+..........+...+ +.+++.|+.    +       ..+.+||..+.+....-
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            445555  569999998754433222222122222222333 446666663    1       12788999887654321


Q ss_pred             e--CCeeE-EEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEEeC-----
Q 003842          637 K--GGTAQ-MRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSE-----  699 (792)
Q Consensus       637 ~--~~~~~-v~~sp~~~~lla~s~d--------g~I~i~D~~t~~~~~~l~~h-~~~V~sv~~spdg~~Las~s~-----  699 (792)
                      .  ..... .....++..++.|+.+        ..+.+||..+.+-...-... ...-.+++. -++++++.|+.     
T Consensus        84 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~  162 (315)
T 4asc_A           84 PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRK  162 (315)
T ss_dssp             CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSC
T ss_pred             CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCc
Confidence            1  11111 1112233444444421        46899999887533211111 111122222 35666666664     


Q ss_pred             --CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEEcccC--CCeEEE
Q 003842          700 --DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTLTAHE--GLIAAL  770 (792)
Q Consensus       700 --d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~~~~h~--~~V~sl  770 (792)
                        +.+.+||+.+.. ...+..+....... +++ .-+++.+++|+.++     .+.+||+.+.+...+..-.  ..-.++
T Consensus       163 ~~~~~~~yd~~~~~-W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  239 (315)
T 4asc_A          163 CLNKMCVYDPKKFE-WKELAPMQTARSLF-GAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL  239 (315)
T ss_dssp             BCCCEEEEETTTTE-EEECCCCSSCCBSC-EEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             ccceEEEEeCCCCe-EEECCCCCCchhce-EEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence              258899987641 12222221111112 222 22667777777654     6899999988766544211  111122


Q ss_pred             EEeCCCCEEEEEeCC
Q 003842          771 AVSTETGYVASASHD  785 (792)
Q Consensus       771 ~fspdg~~LaSgs~D  785 (792)
                      +. -++++++.|+.+
T Consensus       240 ~~-~~~~l~v~GG~~  253 (315)
T 4asc_A          240 VS-LVGTLYAIGGFA  253 (315)
T ss_dssp             EE-ETTEEEEEEEEE
T ss_pred             EE-ECCEEEEECCcc
Confidence            22 266777777764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.06  E-value=0.41  Score=53.31  Aligned_cols=105  Identities=14%  Similarity=0.143  Sum_probs=63.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE--Eecc------CCCCEEEEEECCC---CCeEEEEeC------
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEE------HSSLITDVRFSPS---MPRLATSSF------  574 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~--~l~~------h~~~V~~i~fspd---g~~Lasgs~------  574 (792)
                      -...++|+|.|||+++++-...+.|++++..++....  .+..      ....+..|+|+|+   +.+|+++..      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            4467899999999977766544579888866554322  2221      2456789999995   555555432      


Q ss_pred             -------CCcEEEEeCCCCC------cee-EEec-ccCCCeEEEEEcCCCCeEEEEE
Q 003842          575 -------DKTVRVWDADNPG------YSL-RTFM-GHSASVMSLDFHPNKDDLICSC  616 (792)
Q Consensus       575 -------Dg~V~IWdl~s~~------~~i-~~~~-~h~~~V~sl~fspd~~~ll~sg  616 (792)
                             ...|..|+++...      +.+ ..+. ........|+|.|++..++.+|
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   2346666654321      111 1121 1123478999999987555444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.06  E-value=8.4e-05  Score=88.73  Aligned_cols=10  Identities=20%  Similarity=0.504  Sum_probs=3.5

Q ss_pred             CCeEEEEECC
Q 003842          533 DKKAVLWHTD  542 (792)
Q Consensus       533 Dg~I~vWdl~  542 (792)
                      +|...+|...
T Consensus       487 ~G~AI~y~~s  496 (727)
T 4b8c_D          487 DGCCIFFKRD  496 (727)
T ss_dssp             CCCEEEC---
T ss_pred             ccEEEEEEcc
Confidence            4455555443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.01  E-value=0.019  Score=61.38  Aligned_cols=190  Identities=9%  Similarity=0.050  Sum_probs=104.1

Q ss_pred             CeEEEEeCCCcEEEEeCCCCCceeEEeccc-CCCeEEEEE--cCCCCeEEEEE-eCCCcEEEEEcCCCeeEEEeeCC---
Q 003842          567 PRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDF--HPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGG---  639 (792)
Q Consensus       567 ~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h-~~~V~sl~f--spd~~~ll~sg-s~Dg~I~iwdl~~~~~~~~~~~~---  639 (792)
                      .++++++.||.|+-+|..+ ++....+... ..++....-  .+.+..+++.. ..||.|+.+|..+|.....+..+   
T Consensus        11 ~~V~v~t~dG~l~Ald~~t-G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRN-GHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTT-TEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCC-CcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            3788999999999999987 6666655543 122222110  01122344343 58999999999888655444321   


Q ss_pred             -eeEEEEe-----------cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCC-------CeEEEEEc-----CCCCEEE
Q 003842          640 -TAQMRFQ-----------PHLGRYLAAAAENVVSILDAETQACRLSLQGHTK-------PIDSVCWD-----PSGELLA  695 (792)
Q Consensus       640 -~~~v~~s-----------p~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~-------~V~sv~~s-----pdg~~La  695 (792)
                       ...+...           ..++.+++++.++.+...|+++|+.+..+.....       ...|....     ..+..|+
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~  169 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV  169 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence             1112221           1567889999999999999999999998874321       01122111     1234566


Q ss_pred             EEeCC-eEEEEECCCCCCcce-EEEeecCCCc--e-EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE
Q 003842          696 SVSED-SVRVWTVGSGSEGEC-VHELSCNGNK--F-HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT  759 (792)
Q Consensus       696 s~s~d-~I~IwDl~s~~~~~~-i~~~~~~~~~--i-~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~  759 (792)
                      .+..+ .+.+.+ +++..... +.........  + ....++.|+.+ ++++.||.|+.+|..++..+.
T Consensus       170 ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          170 IGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             EecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            66665 666666 34421111 1111110000  0 00001123554 557788888888888777654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.90  E-value=0.12  Score=58.18  Aligned_cols=256  Identities=10%  Similarity=0.081  Sum_probs=141.4

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEeccC-------------------------CCCE--EEEEECC---CCCeEEEEe-C
Q 003842          526 LLATGGHDKKAVLWHTDTLKSKTNLEEH-------------------------SSLI--TDVRFSP---SMPRLATSS-F  574 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h-------------------------~~~V--~~i~fsp---dg~~Lasgs-~  574 (792)
                      .|.+|+..|.|+|+-+.+++.++.+...                         .+..  ..+++..   ||++|+.-. .
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka  151 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA  151 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence            4678889999999999888888776420                         0011  1233322   566777665 4


Q ss_pred             CCcEEEEeCCCCCceeEEe-cccCCCeEEEEEc--CCCCeEEEEEe------CCCcEE---------E---EEcCCCeeE
Q 003842          575 DKTVRVWDADNPGYSLRTF-MGHSASVMSLDFH--PNKDDLICSCD------GDGEIR---------Y---WSINNGSCT  633 (792)
Q Consensus       575 Dg~V~IWdl~s~~~~i~~~-~~h~~~V~sl~fs--pd~~~ll~sgs------~Dg~I~---------i---wdl~~~~~~  633 (792)
                      +..|...+++. -++-..+ ......+.+++|-  |+..++|+.+-      .||...         +   .|..+.+..
T Consensus       152 n~RvAri~l~~-~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~  230 (638)
T 3sbq_A          152 NSRVARIRLDI-MKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA  230 (638)
T ss_dssp             TTEEEEEETTT-TEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred             CcceEEEECCc-EeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence            56677788876 3332222 2345678888886  56555554331      133311         1   122222221


Q ss_pred             EE--eeCCeeEEEEecCCCEEEEEEcCC---------------eEEEEEC-------------------------CC---
Q 003842          634 RV--FKGGTAQMRFQPHLGRYLAAAAEN---------------VVSILDA-------------------------ET---  668 (792)
Q Consensus       634 ~~--~~~~~~~v~~sp~~~~lla~s~dg---------------~I~i~D~-------------------------~t---  668 (792)
                      ..  ..+....+...+++++.++.+.+.               .|.++++                         +.   
T Consensus       231 ~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~  310 (638)
T 3sbq_A          231 FQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG  310 (638)
T ss_dssp             EEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred             EEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence            11  122223344556666666665421               3444443                         22   


Q ss_pred             -C-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC---------CCcceEEEeecCCCceEEEEEeCCC
Q 003842          669 -Q-ACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG---------SEGECVHELSCNGNKFHSCVFHPTY  735 (792)
Q Consensus       669 -~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~---------~~~~~i~~~~~~~~~i~si~fspdg  735 (792)
                       + ..++.+. -......+.++|||+++++++.-  ++.|+|++..         ....++..-..-+-.....+|.++|
T Consensus       311 ~~~~~~~~iP-~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G  389 (638)
T 3sbq_A          311 KDSKFTRYVP-VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG  389 (638)
T ss_dssp             BCCSSEEEEE-ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred             cCCceEEEEe-CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC
Confidence             1 1111111 11234567899999999988865  9999999742         1112222222245567888999999


Q ss_pred             CEEEEEEcCCeEEEEECCCC----------cEE-EEcccCCCeEEEEE------eCCCCEEEEEeC
Q 003842          736 PSLLVIGCYQSLELWNMSEN----------KTM-TLTAHEGLIAALAV------STETGYVASASH  784 (792)
Q Consensus       736 ~~L~sgs~dg~I~IwDl~~~----------~~~-~~~~h~~~V~sl~f------spdg~~LaSgs~  784 (792)
                      ....+.--|..|..|++...          .++ .+..|-.+ -.+.-      .+||+||++.+.
T Consensus       390 ~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          390 NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEES
T ss_pred             ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecc
Confidence            54455557889999998653          233 34444332 22322      578999988753

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.81  E-value=0.1  Score=54.85  Aligned_cols=208  Identities=10%  Similarity=0.010  Sum_probs=101.4

Q ss_pred             eEEEEeCCCcEEEEeCCCCCceeEEecccC-CCeEEEEEcCCCCeEEEEEeC----CC-------cEEEEEcCCCeeEEE
Q 003842          568 RLATSSFDKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDG----DG-------EIRYWSINNGSCTRV  635 (792)
Q Consensus       568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~-~~V~sl~fspd~~~ll~sgs~----Dg-------~I~iwdl~~~~~~~~  635 (792)
                      +++.|+.  .+.+||..+............ ..-.+++ ..+ +.+++.|+.    ++       .+.+||..+.+....
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   93 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL   93 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence            4445543  388999987443332222111 1222333 233 456667773    12       277889887765443


Q ss_pred             ee--CCe-eEEEEecCCCEEEEEEcC-------CeEEEEECCCCeEEEEecCCCCC--eEEEEEcCCCCEEEEEeC----
Q 003842          636 FK--GGT-AQMRFQPHLGRYLAAAAE-------NVVSILDAETQACRLSLQGHTKP--IDSVCWDPSGELLASVSE----  699 (792)
Q Consensus       636 ~~--~~~-~~v~~sp~~~~lla~s~d-------g~I~i~D~~t~~~~~~l~~h~~~--V~sv~~spdg~~Las~s~----  699 (792)
                      -.  ... .......++..+++|+.+       ..+.+||..+.+-...-. ...+  -.+++. .++++++.|+.    
T Consensus        94 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~  171 (318)
T 2woz_A           94 PPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYGHNVIS-HNGMIYCLGGKTDDK  171 (318)
T ss_dssp             SCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEESCEEEE-ETTEEEEECCEESSS
T ss_pred             CCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccccEEEE-ECCEEEEEcCCCCCC
Confidence            11  111 111122244555566543       368889998775433211 1111  112222 35666666652    


Q ss_pred             ---CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEEcccCCC--eEE
Q 003842          700 ---DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHEGL--IAA  769 (792)
Q Consensus       700 ---d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~~~~h~~~--V~s  769 (792)
                         +.+.+||+.+.. ...+..+...... .+++. -+++.++.|+.+     ..+.+||+.+.+...+......  -.+
T Consensus       172 ~~~~~~~~yd~~~~~-W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~  248 (318)
T 2woz_A          172 KCTNRVFIYNPKKGD-WKDLAPMKTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSIS  248 (318)
T ss_dssp             CBCCCEEEEETTTTE-EEEECCCSSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCE
T ss_pred             CccceEEEEcCCCCE-EEECCCCCCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceE
Confidence               158899987642 2222222211111 22222 256667777654     3688999998876644322111  112


Q ss_pred             EEEeCCCCEEEEEeCC
Q 003842          770 LAVSTETGYVASASHD  785 (792)
Q Consensus       770 l~fspdg~~LaSgs~D  785 (792)
                      ++ .-++++++.|+.+
T Consensus       249 ~~-~~~~~i~v~GG~~  263 (318)
T 2woz_A          249 LV-SLAGSLYAIGGFA  263 (318)
T ss_dssp             EE-EETTEEEEECCBC
T ss_pred             EE-EECCEEEEECCee
Confidence            22 2356777777754

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=96.76  E-value=0.3  Score=53.01  Aligned_cols=254  Identities=8%  Similarity=-0.033  Sum_probs=120.1

Q ss_pred             CCCeEEEEEcC--CCCEEEEEeCCC----eEEEEECCCCceeEEecc--------------CCCCEEEEEECCC--CCeE
Q 003842          512 TSKVICCHFSS--DGKLLATGGHDK----KAVLWHTDTLKSKTNLEE--------------HSSLITDVRFSPS--MPRL  569 (792)
Q Consensus       512 ~~~V~~lafsp--dg~~Lasgs~Dg----~I~vWdl~t~~~~~~l~~--------------h~~~V~~i~fspd--g~~L  569 (792)
                      ...|.+|+++|  ++.++ +++..|    .|... .+.++.-..+..              ....|.+|++.|.  ...|
T Consensus        54 ~~~v~~i~~dp~~~~~l~-~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l  131 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERML-MAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW  131 (394)
T ss_dssp             TSEEEEEEECSSSTTCEE-EEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred             CCceEEEEECCCCCCeEE-EEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence            34699999998  44444 444444    34333 233322222211              1135888999872  4566


Q ss_pred             EEEeCCCcEEEEeCCCCCceeEEecc-------------------cCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCC
Q 003842          570 ATSSFDKTVRVWDADNPGYSLRTFMG-------------------HSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINN  629 (792)
Q Consensus       570 asgs~Dg~V~IWdl~s~~~~i~~~~~-------------------h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~  629 (792)
                      +++...+.|...  ...+.....+..                   ....|.+|.+.|.. ..++ .+..++.|...+ ..
T Consensus       132 ~~g~~~ggl~~S--~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~-vg~~~ggl~~s~-Dg  207 (394)
T 3b7f_A          132 YAGTSPQGLFRS--TDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY-IGMSSGGVFEST-DA  207 (394)
T ss_dssp             EEEEETTEEEEE--SSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE-EEEETBEEEEES-ST
T ss_pred             EEEecCCcEEEE--cCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE-EEECCCCEEEEC-CC
Confidence            666666654444  333333333321                   12357899998843 3444 343344444332 22


Q ss_pred             CeeEEEee----------------CCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecC--CC---CCeEEEEE
Q 003842          630 GSCTRVFK----------------GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQG--HT---KPIDSVCW  687 (792)
Q Consensus       630 ~~~~~~~~----------------~~~~~v~~sp~~-~~lla~s~dg~I~i~D~~t~~~~~~l~~--h~---~~V~sv~~  687 (792)
                      ++.-..+.                ..+..+.+.+.. +.++++... .|+..+-. ++.-..+..  ..   ..+.++++
T Consensus       208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~-gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~  285 (394)
T 3b7f_A          208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC-GIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVV  285 (394)
T ss_dssp             TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT-EEEEEETT-TTEEECGGGGSCTTTCSCEEEEEE
T ss_pred             CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC-eEEEeCCC-CCcceECCCCCCCCCccceEEEEE
Confidence            22211111                124567777763 566666544 45544432 222222221  11   34567888


Q ss_pred             cCC-CCEEEEEeC-----------C-eEEEEECCC-CCCcceEEE-eecCCC----ceEEEEEeCCC-CEEEEEEcCCeE
Q 003842          688 DPS-GELLASVSE-----------D-SVRVWTVGS-GSEGECVHE-LSCNGN----KFHSCVFHPTY-PSLLVIGCYQSL  747 (792)
Q Consensus       688 spd-g~~Las~s~-----------d-~I~IwDl~s-~~~~~~i~~-~~~~~~----~i~si~fspdg-~~L~sgs~dg~I  747 (792)
                      +|. ...|+++..           + ...||.... +.....+.. +.....    ....++++|.. ..|++++.++.|
T Consensus       286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l  365 (394)
T 3b7f_A          286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI  365 (394)
T ss_dssp             CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred             CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence            763 333333321           2 345555444 233333221 111110    11357787743 457777666666


Q ss_pred             EEEECCCCcEEEEcccCCCeEEEEEe
Q 003842          748 ELWNMSENKTMTLTAHEGLIAALAVS  773 (792)
Q Consensus       748 ~IwDl~~~~~~~~~~h~~~V~sl~fs  773 (792)
                      +.-+-.......+..+-..|.+|.|.
T Consensus       366 ~~S~D~G~tW~~~~~~lp~~~~v~~~  391 (394)
T 3b7f_A          366 WASADEGEHWQCIASHLPHIYAVQSA  391 (394)
T ss_dssp             EEESSTTSBCEEEECSCSCEEEEEEE
T ss_pred             EEECCCCCCceEcccCCCCeeEEEEe
Confidence            54433222223444444567777764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.69  E-value=0.047  Score=57.20  Aligned_cols=181  Identities=15%  Similarity=0.100  Sum_probs=92.4

Q ss_pred             CCCEEEEEeC----C-----CeEEEEECCCCceeEE--eccCCCCEEEEEECCCCCeEEEEeCC-----CcEEEEeCCCC
Q 003842          523 DGKLLATGGH----D-----KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNP  586 (792)
Q Consensus       523 dg~~Lasgs~----D-----g~I~vWdl~t~~~~~~--l~~h~~~V~~i~fspdg~~Lasgs~D-----g~V~IWdl~s~  586 (792)
                      ++++++.|+.    +     ..+.+||..+.+-...  +.........+.+  ++++++.|+.+     ..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            5667777765    2     4688899877643222  2222222223333  56677777654     35888998763


Q ss_pred             CceeE-EecccCCCeEEEEEcCCCCeEEEEEeCC-----CcEEEEEcCCCeeEEEee--CC--eeEEEEecCCCEEEEEE
Q 003842          587 GYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFK--GG--TAQMRFQPHLGRYLAAA  656 (792)
Q Consensus       587 ~~~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~--~~--~~~v~~sp~~~~lla~s  656 (792)
                      ..... .+........++.+   ++.+++.|+.+     ..+.+||+.+.+....-.  ..  ...+.. -++..++.++
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG  223 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGG  223 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred             eEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE-ECCEEEEEeC
Confidence            21111 11111112222223   34566677654     468999998876543321  11  111222 2444455555


Q ss_pred             cC-----CeEEEEECCCCeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC------eEEEEECCCC
Q 003842          657 AE-----NVVSILDAETQACRLSLQGHT-KPIDSVCWDPSGELLASVSED------SVRVWTVGSG  710 (792)
Q Consensus       657 ~d-----g~I~i~D~~t~~~~~~l~~h~-~~V~sv~~spdg~~Las~s~d------~I~IwDl~s~  710 (792)
                      .+     ..+.+||+++.+-...-.... ..-.+++. -++++++.|+.+      .|.+||+.+.
T Consensus       224 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          224 YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             BCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            43     579999998875433211111 11112222 256666666532      5778888653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.68  E-value=0.025  Score=60.54  Aligned_cols=217  Identities=9%  Similarity=-0.002  Sum_probs=101.9

Q ss_pred             CCCeEEEEeCC-CcEEEEeCCCCCceeEEecc----cCCCeEEEEEcCCCCeEEEEEeC-C---------CcEEEEEcCC
Q 003842          565 SMPRLATSSFD-KTVRVWDADNPGYSLRTFMG----HSASVMSLDFHPNKDDLICSCDG-D---------GEIRYWSINN  629 (792)
Q Consensus       565 dg~~Lasgs~D-g~V~IWdl~s~~~~i~~~~~----h~~~V~sl~fspd~~~ll~sgs~-D---------g~I~iwdl~~  629 (792)
                      ++.+++.|+.+ ..+.+||+.........+..    ......++.+   ++.+++.|+. +         ..+.+||+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            45555666543 45888888631222222221    1111222222   2456666665 2         4689999988


Q ss_pred             CeeEEEee---CC-eeEEEEecCCCEEEEEEcC---------------------------------------CeEEEEEC
Q 003842          630 GSCTRVFK---GG-TAQMRFQPHLGRYLAAAAE---------------------------------------NVVSILDA  666 (792)
Q Consensus       630 ~~~~~~~~---~~-~~~v~~sp~~~~lla~s~d---------------------------------------g~I~i~D~  666 (792)
                      .+....-.   .. ....++..++..++.|+.+                                       ..+.+||.
T Consensus        96 ~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~  175 (357)
T 2uvk_A           96 NSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP  175 (357)
T ss_dssp             TEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred             CcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence            76554321   11 1122233454555556543                                       57999999


Q ss_pred             CCCeEEE--EecCCCCCeEEEEEcCCCCEEEEEeC-------CeEEEEEC--CCCCCcceEEEeecCCCceEEEEEeCCC
Q 003842          667 ETQACRL--SLQGHTKPIDSVCWDPSGELLASVSE-------DSVRVWTV--GSGSEGECVHELSCNGNKFHSCVFHPTY  735 (792)
Q Consensus       667 ~t~~~~~--~l~~h~~~V~sv~~spdg~~Las~s~-------d~I~IwDl--~s~~~~~~i~~~~~~~~~i~si~fspdg  735 (792)
                      .+.+-..  .+......-.+++.. ++++++.|+.       +.+.+||+  .+. ....+..+..........+...++
T Consensus       176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~-~W~~~~~~~~~~~~~~~~~~~~~~  253 (357)
T 2uvk_A          176 STQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNL-KWNKLAPVSSPDGVAGGFAGISND  253 (357)
T ss_dssp             TTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---C-EEEECCCSSTTTCCBSCEEEEETT
T ss_pred             CCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCC-cEEecCCCCCCcccccceEEEECC
Confidence            8864333  222111111233332 5566666542       25777877  322 122222221111112222333456


Q ss_pred             CEEEEEEcC----------------------CeEEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEeCCC
Q 003842          736 PSLLVIGCY----------------------QSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDK  786 (792)
Q Consensus       736 ~~L~sgs~d----------------------g~I~IwDl~~~~~~~~~~h~-~~V~sl~fspdg~~LaSgs~DG  786 (792)
                      +.+++|+.+                      ..+.+||+.+.+...+.... ......++..++++++.||.++
T Consensus       254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~  327 (357)
T 2uvk_A          254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETA  327 (357)
T ss_dssp             EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECG
T ss_pred             EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCC
Confidence            666666632                      25789999887655332111 1111122334678888888653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.62  E-value=0.097  Score=65.12  Aligned_cols=217  Identities=10%  Similarity=0.180  Sum_probs=125.3

Q ss_pred             CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCe
Q 003842          532 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD  611 (792)
Q Consensus       532 ~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~  611 (792)
                      ....|.|.|+.++..+.+-.-   .--+...+|..+.||.-. ..++.|||+++ +..++.+.- ...|.-=.|..... 
T Consensus        46 ~~~~vvIidl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnl~~-k~klks~~~-~e~VvfWkWis~~~-  118 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHTM-TDDVTFWKWISLNT-  118 (1630)
T ss_pred             CCceEEEEECCCCCCcccccc---cchhhccCCCcceEEEec-CCeEEEeehHH-hhhhccccc-CCCceEEEecCCCe-
Confidence            344789999987654422111   111234567776666554 77899999997 444555443 33455556654432 


Q ss_pred             EEEEEeCCCcEEEEEcCCC-eeEEEee-------CCeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEec
Q 003842          612 LICSCDGDGEIRYWSINNG-SCTRVFK-------GGTAQMRFQPHLGRYLAAAA-------ENVVSILDAETQACRLSLQ  676 (792)
Q Consensus       612 ll~sgs~Dg~I~iwdl~~~-~~~~~~~-------~~~~~v~~sp~~~~lla~s~-------dg~I~i~D~~t~~~~~~l~  676 (792)
                      +.+++  +..|+.|++... ..++.|.       ..+...+.+++.++++..+-       .|.+.+|..+.+. -..+.
T Consensus       119 l~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ie  195 (1630)
T 1xi4_A          119 VALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE  195 (1630)
T ss_pred             eEEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhh
Confidence            32222  678999999642 2333332       23444566777787766553       4788888876542 22344


Q ss_pred             CCCCCeEEEEEcC---CCCEEEEEeC----CeEEEEECCCC---CC--c-ceEEEeec---CCCceEEEEEeCCCCEEEE
Q 003842          677 GHTKPIDSVCWDP---SGELLASVSE----DSVRVWTVGSG---SE--G-ECVHELSC---NGNKFHSCVFHPTYPSLLV  740 (792)
Q Consensus       677 ~h~~~V~sv~~sp---dg~~Las~s~----d~I~IwDl~s~---~~--~-~~i~~~~~---~~~~i~si~fspdg~~L~s  740 (792)
                      ||......+....   ...+++.+..    ..+.|.++...   ..  . +.+..+..   ...-..++..++....++.
T Consensus       196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~  275 (1630)
T 1xi4_A          196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL  275 (1630)
T ss_pred             HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence            5544433333221   1223333332    37888888543   10  0 11111111   1233456778888899999


Q ss_pred             EEcCCeEEEEECCCCcEE
Q 003842          741 IGCYQSLELWNMSENKTM  758 (792)
Q Consensus       741 gs~dg~I~IwDl~~~~~~  758 (792)
                      .+..|.|++||+.++.++
T Consensus       276 itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          276 ITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             EecCceEEEEecccchhh
Confidence            999999999999999877

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.58  E-value=0.091  Score=62.08  Aligned_cols=221  Identities=5%  Similarity=-0.023  Sum_probs=114.1

Q ss_pred             CCCCeEEEEeCC----CcEEEEeCCCCCceeEEec------ccCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEc
Q 003842          564 PSMPRLATSSFD----KTVRVWDADNPGYSLRTFM------GHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSI  627 (792)
Q Consensus       564 pdg~~Lasgs~D----g~V~IWdl~s~~~~i~~~~------~h~~~V~sl~fspd~~~ll~sgs~D------g~I~iwdl  627 (792)
                      .++.+++.|+.+    ..+.+||..+.......+.      .....-.+++....++.+++.|+.+      ..+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777754    4588899887433322201      1111112333333124566677654      35889999


Q ss_pred             CCCeeEEEee--CC--eeEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEec-----CCCCCeEEEEEcCC-CCEEE
Q 003842          628 NNGSCTRVFK--GG--TAQMRFQPHLGRYLAAAAEN--VVSILDAETQACRLSLQ-----GHTKPIDSVCWDPS-GELLA  695 (792)
Q Consensus       628 ~~~~~~~~~~--~~--~~~v~~sp~~~~lla~s~dg--~I~i~D~~t~~~~~~l~-----~h~~~V~sv~~spd-g~~La  695 (792)
                      .+.+....-.  .+  ...++...++..++.|+.++  .+.+||..+..-...-.     .......++.+..+ +++++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            8876554321  11  11223323666666666543  79999998875433211     11122233555555 66666


Q ss_pred             EEeC--------CeEEEEECCCCCC-----cceEEEeecCCCceEEEEEeCCCCEEEEEEcC--------CeEEEEECCC
Q 003842          696 SVSE--------DSVRVWTVGSGSE-----GECVHELSCNGNKFHSCVFHPTYPSLLVIGCY--------QSLELWNMSE  754 (792)
Q Consensus       696 s~s~--------d~I~IwDl~s~~~-----~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d--------g~I~IwDl~~  754 (792)
                      .|+.        +.+.+||+.+...     ...+.........-.+++...++..+++|+.+        ..|.+||+.+
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence            6654        2588999987642     22232211111122233344446677777743        4699999998


Q ss_pred             CcEEEEcccC--------CCe-EEEEEeCCCCEEEEEeC
Q 003842          755 NKTMTLTAHE--------GLI-AALAVSTETGYVASASH  784 (792)
Q Consensus       755 ~~~~~~~~h~--------~~V-~sl~fspdg~~LaSgs~  784 (792)
                      .+........        ..+ .+++...++++++.||.
T Consensus       636 ~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg  674 (695)
T 2zwa_A          636 ETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG  674 (695)
T ss_dssp             TEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred             CeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence            8765322100        000 23333455677777764

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=96.55  E-value=1.2  Score=48.22  Aligned_cols=258  Identities=9%  Similarity=-0.023  Sum_probs=121.3

Q ss_pred             CEEEEEeCCCeEEEEECCC-CceeEEe--ccCCCCEEEEEECC-CCCeEEEEeCCC--cEEEEeCCCCCceeEEecc---
Q 003842          525 KLLATGGHDKKAVLWHTDT-LKSKTNL--EEHSSLITDVRFSP-SMPRLATSSFDK--TVRVWDADNPGYSLRTFMG---  595 (792)
Q Consensus       525 ~~Lasgs~Dg~I~vWdl~t-~~~~~~l--~~h~~~V~~i~fsp-dg~~Lasgs~Dg--~V~IWdl~s~~~~i~~~~~---  595 (792)
                      ..|++|+..| +.+++... +..-..+  ......|.+|++.| +...|++++..|  ...||.....+.....+..   
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~  101 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPA  101 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCcccc
Confidence            3677777776 55555432 2222221  12345799999998 334455555444  1123333332333232221   


Q ss_pred             -----------cCCCeEEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeEEEee----------------------CCe
Q 003842          596 -----------HSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFK----------------------GGT  640 (792)
Q Consensus       596 -----------h~~~V~sl~fspd--~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----------------------~~~  640 (792)
                                 ....|.+|++.|.  ...++ ++...+.|...+-. ++.-..+.                      ..+
T Consensus       102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~-~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i  179 (394)
T 3b7f_A          102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWY-AGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM  179 (394)
T ss_dssp             CCCCC----CCCCCEEEEEEECCTTSTTCEE-EEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred             CCCcccccccccccceeEEEeCCCCCCCEEE-EEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCce
Confidence                       1125778999873  34444 55445555544322 22111111                      123


Q ss_pred             eEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEecC-----C--------CCCeEEEEEcCC-CCEEEEEeCCeEEEE
Q 003842          641 AQMRFQPH-LGRYLAAAAENVVSILDAETQACRLSLQG-----H--------TKPIDSVCWDPS-GELLASVSEDSVRVW  705 (792)
Q Consensus       641 ~~v~~sp~-~~~lla~s~dg~I~i~D~~t~~~~~~l~~-----h--------~~~V~sv~~spd-g~~Las~s~d~I~Iw  705 (792)
                      ..+.+.|. .+.++++..++.|...+-. ++.-..+..     +        ...+.+|+++++ ...|+.+..+.|...
T Consensus       180 ~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s  258 (394)
T 3b7f_A          180 HSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRM  258 (394)
T ss_dssp             EEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEE
T ss_pred             eEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEe
Confidence            46777774 4567777666655544322 221111110     0        124889999985 356666666665554


Q ss_pred             ECCCCCCcceEEEeec--CC---CceEEEEEeCC-CCEEEEEEc-----------CCeEEEEECCC-CcEE-EEc-ccCC
Q 003842          706 TVGSGSEGECVHELSC--NG---NKFHSCVFHPT-YPSLLVIGC-----------YQSLELWNMSE-NKTM-TLT-AHEG  765 (792)
Q Consensus       706 Dl~s~~~~~~i~~~~~--~~---~~i~si~fspd-g~~L~sgs~-----------dg~I~IwDl~~-~~~~-~~~-~h~~  765 (792)
                      +-. +.   ....+..  ..   ..+..++++|. ...|+++..           ++...||...+ ++.. .+. +-..
T Consensus       259 ~D~-G~---tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~  334 (394)
T 3b7f_A          259 DRR-EG---VWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPT  334 (394)
T ss_dssp             ETT-TT---EEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCC
T ss_pred             CCC-CC---cceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCC
Confidence            421 21   1111111  11   23567788763 344555542           23345554443 3322 221 1110


Q ss_pred             -------CeEEEEEeCC-CCEEEEEeCCCcEEE
Q 003842          766 -------LIAALAVSTE-TGYVASASHDKFVKL  790 (792)
Q Consensus       766 -------~V~sl~fspd-g~~LaSgs~DG~I~I  790 (792)
                             ...+++++|. ...|+.++.++.|.+
T Consensus       335 ~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~  367 (394)
T 3b7f_A          335 DQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA  367 (394)
T ss_dssp             SSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred             ccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence                   1235788774 344666666666653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.51  E-value=0.061  Score=57.48  Aligned_cols=142  Identities=8%  Similarity=-0.010  Sum_probs=84.0

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEeccC-CCCEEEEEEC--C-CCCeEEEE-eCCCcEEEEeCCCCCceeEEecc----c
Q 003842          526 LLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFS--P-SMPRLATS-SFDKTVRVWDADNPGYSLRTFMG----H  596 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h-~~~V~~i~fs--p-dg~~Lasg-s~Dg~V~IWdl~s~~~~i~~~~~----h  596 (792)
                      ++++++.||.|+-+|.++|+.+-+++.. ..++....-.  + ++..++.. +.||.|..++..++ .....+..    .
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G-~~~~~~~~~~lv~   90 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG-LQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE-EEEEEEEHHHHHT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC-cEEeeecccccee
Confidence            7889999999999999999999888754 1222221100  1 22334343 68999999998763 22222221    1


Q ss_pred             CCCeEE---EEE-cC---CCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCee----------EEEEe-----cCCCEEEE
Q 003842          597 SASVMS---LDF-HP---NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA----------QMRFQ-----PHLGRYLA  654 (792)
Q Consensus       597 ~~~V~s---l~f-sp---d~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~----------~v~~s-----p~~~~lla  654 (792)
                      ..++..   ..+ .+   .....+++|+.+|.+...|+++|+.+..+.....          |.+..     ..++.++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            122221   000 00   0234677999999999999999999998864321          11111     12356777


Q ss_pred             EEcCCeEEEEECCCC
Q 003842          655 AAAENVVSILDAETQ  669 (792)
Q Consensus       655 ~s~dg~I~i~D~~t~  669 (792)
                      +..+..|.+.+ +++
T Consensus       171 g~~~y~v~~~~-~sG  184 (339)
T 2be1_A          171 GKTIFELGIHS-YDG  184 (339)
T ss_dssp             EEEEEECEECC-TTS
T ss_pred             ecceEEEEEEC-CCC
Confidence            77777777766 444

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.35  E-value=0.19  Score=54.84  Aligned_cols=143  Identities=15%  Similarity=0.058  Sum_probs=95.2

Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC----CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC--------
Q 003842          520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH----SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--------  587 (792)
Q Consensus       520 fspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h----~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~--------  587 (792)
                      ...+|..|+++- ++.||.-++......+.++..    -..|..+..+|+|++||..+.. .|.|-.+..+.        
T Consensus        28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHH
T ss_pred             EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCccccc
Confidence            345666666664 578888788755555555433    2368889999999999988655 58888887321        


Q ss_pred             ---ceeEEecc------cCCCeEEEEEcCCCCe--EEEEEeCCCcEEEEEcCCCe--eE------EEee-----CCeeEE
Q 003842          588 ---YSLRTFMG------HSASVMSLDFHPNKDD--LICSCDGDGEIRYWSINNGS--CT------RVFK-----GGTAQM  643 (792)
Q Consensus       588 ---~~i~~~~~------h~~~V~sl~fspd~~~--ll~sgs~Dg~I~iwdl~~~~--~~------~~~~-----~~~~~v  643 (792)
                         ...+.+.-      ....|..+.|||-+..  .|++-..|+.|++||+....  ..      ..|.     ..+.++
T Consensus       106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEE
T ss_pred             ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEE
Confidence               11223332      2567999999997643  56678889999999998622  11      1122     345678


Q ss_pred             EEecCCCEEEEEE--cCCeEEEE
Q 003842          644 RFQPHLGRYLAAA--AENVVSIL  664 (792)
Q Consensus       644 ~~sp~~~~lla~s--~dg~I~i~  664 (792)
                      +|..++=.|++..  .+|.|+-+
T Consensus       186 ~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          186 EFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEcCCCcEEEEEecCCCCCEEEE
Confidence            8888766677755  66777665

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.25  E-value=2  Score=47.79  Aligned_cols=105  Identities=11%  Similarity=0.043  Sum_probs=60.3

Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc---eeEEec---------cCCCCEEEEEECCC----CCeEEEEeC-
Q 003842          513 SKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLK---SKTNLE---------EHSSLITDVRFSPS----MPRLATSSF-  574 (792)
Q Consensus       513 ~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~---~~~~l~---------~h~~~V~~i~fspd----g~~Lasgs~-  574 (792)
                      ...+.|+|.|||. .|+++...|.|++++.+...   .+..+.         ........|+|+|+    +.++++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4578999999996 55566788999999754321   222221         11457889999996    333333222 


Q ss_pred             -C----------CcEEEEeCCCC---------CceeEEec--ccCCCeEEEEEcCCCCeEEEEEe
Q 003842          575 -D----------KTVRVWDADNP---------GYSLRTFM--GHSASVMSLDFHPNKDDLICSCD  617 (792)
Q Consensus       575 -D----------g~V~IWdl~s~---------~~~i~~~~--~h~~~V~sl~fspd~~~ll~sgs  617 (792)
                       +          ..|.-|.+...         .+.+..+.  ........|+|.||+..+|.+|+
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence             1          13445666421         11222222  12234678999999865554443

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=96.25  E-value=0.21  Score=58.93  Aligned_cols=239  Identities=8%  Similarity=0.022  Sum_probs=123.2

Q ss_pred             EEE-EcCCCCEEEEEe-----CCCeEEEEECCCCceeEE-ec-cCCC------CEEEEEECCCCCeEEEE----------
Q 003842          517 CCH-FSSDGKLLATGG-----HDKKAVLWHTDTLKSKTN-LE-EHSS------LITDVRFSPSMPRLATS----------  572 (792)
Q Consensus       517 ~la-fspdg~~Lasgs-----~Dg~I~vWdl~t~~~~~~-l~-~h~~------~V~~i~fspdg~~Lasg----------  572 (792)
                      .+. ++||+++++.+-     .-..|+++|+++++.+.. +. .-..      ....++|..+..++++.          
T Consensus       133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~  212 (711)
T 4hvt_A          133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSS  212 (711)
T ss_dssp             EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTT
T ss_pred             ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcC
Confidence            344 889999877642     234699999999877631 22 0000      11344776444344432          


Q ss_pred             eCCCcEEEEeCCCCCc-eeEEecccCCCe-EEEEEcCCCCe----EEEEEeCC---CcEEEEEcCC--CeeEEEeeCCee
Q 003842          573 SFDKTVRVWDADNPGY-SLRTFMGHSASV-MSLDFHPNKDD----LICSCDGD---GEIRYWSINN--GSCTRVFKGGTA  641 (792)
Q Consensus       573 s~Dg~V~IWdl~s~~~-~i~~~~~h~~~V-~sl~fspd~~~----ll~sgs~D---g~I~iwdl~~--~~~~~~~~~~~~  641 (792)
                      +....|+.|.+-++.. ....+.+....+ .+...+.++..    ++++.+.+   ..+++.|...  ++.+........
T Consensus       213 ~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  292 (711)
T 4hvt_A          213 LYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA  292 (711)
T ss_dssp             SSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC
T ss_pred             CCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc
Confidence            1235699998876432 233343333333 34455666653    45454422   4566667653  433333222222


Q ss_pred             EEEEecCCCEEEEE----------EcCCeEEEEECCCCe-------EEEE-ecC-CCCCeEEEEEcCCCCEEEEEeCC--
Q 003842          642 QMRFQPHLGRYLAA----------AAENVVSILDAETQA-------CRLS-LQG-HTKPIDSVCWDPSGELLASVSED--  700 (792)
Q Consensus       642 ~v~~sp~~~~lla~----------s~dg~I~i~D~~t~~-------~~~~-l~~-h~~~V~sv~~spdg~~Las~s~d--  700 (792)
                      .+.....+..++..          ...+.|.++|+.+..       .... +.. ....+..+.|..+ .++++...+  
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~  371 (711)
T 4hvt_A          293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVV  371 (711)
T ss_dssp             EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTE
T ss_pred             eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCE
Confidence            23334443333322          235678889887631       1112 222 3345778888866 455555554  


Q ss_pred             -eEEEEECCCCC-CcceEEEeecCCCceEEEEEeCCCCEEEEE-EcC---CeEEEEECCCCcEE
Q 003842          701 -SVRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVI-GCY---QSLELWNMSENKTM  758 (792)
Q Consensus       701 -~I~IwDl~s~~-~~~~i~~~~~~~~~i~si~fspdg~~L~sg-s~d---g~I~IwDl~~~~~~  758 (792)
                       .|.++|+.++. ....+..+.. ...+..+.+.+++..++.. +..   ..++.+|+. ++..
T Consensus       372 ~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~  433 (711)
T 4hvt_A          372 AKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK  433 (711)
T ss_dssp             EEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred             EEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence             67888876542 1111111221 2346666666776544443 332   478888887 5443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.98  E-value=0.14  Score=63.83  Aligned_cols=232  Identities=10%  Similarity=0.168  Sum_probs=134.8

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEeccc--
Q 003842          519 HFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH--  596 (792)
Q Consensus       519 afspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h--  596 (792)
                      -.+|..+.||.=. ..++.|||+++...++.+.-.. .|.-=.|..+. .|+..+ +..|+-|+++....+++.|..|  
T Consensus        72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~  147 (1630)
T 1xi4_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSS  147 (1630)
T ss_pred             ccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchh
Confidence            3456666666554 6789999999877777665433 45556776544 343333 3359999997655666666555  


Q ss_pred             --CCCeEEEEEcCCCCeEEEEEe------CCCcEEEEEcCCCeeEEEeeCCeeEE---EE--ecCCCEEEEEEc----CC
Q 003842          597 --SASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTAQM---RF--QPHLGRYLAAAA----EN  659 (792)
Q Consensus       597 --~~~V~sl~fspd~~~ll~sgs------~Dg~I~iwdl~~~~~~~~~~~~~~~v---~~--sp~~~~lla~s~----dg  659 (792)
                        ...|..-..+++.+.++++|-      -.|.+.+|.++.+.. ..++++..+.   .+  .+....+++...    .+
T Consensus       148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~  226 (1630)
T 1xi4_A          148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  226 (1630)
T ss_pred             cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCc
Confidence              456777777888888877664      357888888775432 1222222111   11  111223333332    26


Q ss_pred             eEEEEECCCC---eEEE------EecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCce
Q 003842          660 VVSILDAETQ---ACRL------SLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF  726 (792)
Q Consensus       660 ~I~i~D~~t~---~~~~------~l~~---h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i  726 (792)
                      .++|.++...   ...+      .+..   -.+--.++..++.-.++...+.. .|.+||+.++   .++..-......|
T Consensus       227 kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~~i  303 (1630)
T 1xi4_A          227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGETI  303 (1630)
T ss_pred             eEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCCce
Confidence            8888887542   1111      1111   11223345666655666666655 8999999987   5555554455555


Q ss_pred             EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          727 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       727 ~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      ...+.+....-+++....|.|.-..+++..++
T Consensus       304 F~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv  335 (1630)
T 1xi4_A          304 FVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (1630)
T ss_pred             EEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence            55554444444566667776666666665554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.46  E-value=0.55  Score=46.70  Aligned_cols=143  Identities=13%  Similarity=0.025  Sum_probs=82.8

Q ss_pred             CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE------EEEec--CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC
Q 003842          639 GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC------RLSLQ--GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG  710 (792)
Q Consensus       639 ~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~------~~~l~--~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~  710 (792)
                      ....++|+|++. |+++ .+|.++-.+..+...      -..+-  +-. ...++.|+++|.+.++ +++.|+-++-.+.
T Consensus        42 ~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~~  117 (236)
T 1tl2_A           42 NFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQS  117 (236)
T ss_dssp             TCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCCS
T ss_pred             cceeEEECCCcc-EEEE-eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCcC
Confidence            566899999655 5555 888888887755211      11111  111 1478999999998888 6667777765332


Q ss_pred             CCcce----EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-------EEEEc-ccCCCeEEEEEeCCCCE
Q 003842          711 SEGEC----VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-------TMTLT-AHEGLIAALAVSTETGY  778 (792)
Q Consensus       711 ~~~~~----i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~-------~~~~~-~h~~~V~sl~fspdg~~  778 (792)
                      ....-    ...-...-..+..+.|.|+|...++.  ++.++-+......       ...+. ..-....-+.|++++.+
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l  195 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL  195 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence            21111    11111122467899999999855555  7776544333221       01111 23334455778999887


Q ss_pred             EEEEeCCCcEE
Q 003842          779 VASASHDKFVK  789 (792)
Q Consensus       779 LaSgs~DG~I~  789 (792)
                      +++.  +|.|+
T Consensus       196 ~~v~--~g~~Y  204 (236)
T 1tl2_A          196 FGVQ--GGKFY  204 (236)
T ss_dssp             EEEE--TTEEE
T ss_pred             EEEe--CCeEE
Confidence            7665  77553

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.44  E-value=0.92  Score=51.08  Aligned_cols=223  Identities=15%  Similarity=0.132  Sum_probs=130.9

Q ss_pred             eEEEEeCCCcEEEEeCCCCCceeEEeccc-------------------------CCCe--EEEEEc---CCCCeEEEEEe
Q 003842          568 RLATSSFDKTVRVWDADNPGYSLRTFMGH-------------------------SASV--MSLDFH---PNKDDLICSCD  617 (792)
Q Consensus       568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h-------------------------~~~V--~sl~fs---pd~~~ll~sgs  617 (792)
                      .|.+|+..|.|+|+-+.+ .+.+..+.-.                         .+..  ..+.+.   -||+++|+-.-
T Consensus        72 ~f~SgG~sG~v~v~G~PS-mR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk  150 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPS-MRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDK  150 (638)
T ss_dssp             EEEECGGGCCEEEEEETT-TEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred             EEeecCcCceEEEEecCC-cceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence            367888889999998876 4443333200                         0000  122222   24556665555


Q ss_pred             CCCcEEEEEcCCCeeEEEeeC----CeeEEEEe--cCCCEEEEEEc-------CCeE------------EEEECCCCeEE
Q 003842          618 GDGEIRYWSINNGSCTRVFKG----GTAQMRFQ--PHLGRYLAAAA-------ENVV------------SILDAETQACR  672 (792)
Q Consensus       618 ~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~s--p~~~~lla~s~-------dg~I------------~i~D~~t~~~~  672 (792)
                      .+..|-..+++..++.++++.    .+..++|.  |+.+++++++.       ||..            ...|.++.+..
T Consensus       151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~  230 (638)
T 3sbq_A          151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA  230 (638)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred             CCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence            677888999999998887764    34456665  68888888876       3221            12344444444


Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeC----------------CeEEEEECCC-------CC--Ccc--eEEEeecC---
Q 003842          673 LSLQGHTKPIDSVCWDPSGELLASVSE----------------DSVRVWTVGS-------GS--EGE--CVHELSCN---  722 (792)
Q Consensus       673 ~~l~~h~~~V~sv~~spdg~~Las~s~----------------d~I~IwDl~s-------~~--~~~--~i~~~~~~---  722 (792)
                      +.+.- ......+..+++|++.++.+.                |.|.++++..       ++  ...  -+..+.+.   
T Consensus       231 ~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~  309 (638)
T 3sbq_A          231 FQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD  309 (638)
T ss_dssp             EEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred             EEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence            33321 223444566778888776653                2477777531       11  111  11122221   


Q ss_pred             ------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC------cE-------EEEcccCCCeEEEEEeCCC
Q 003842          723 ------------GNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSEN------KT-------MTLTAHEGLIAALAVSTET  776 (792)
Q Consensus       723 ------------~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~~~------~~-------~~~~~h~~~V~sl~fspdg  776 (792)
                                  ......|.++|||+++++++. +.+|.|+|++..      ++       +....-.-.....+|.++|
T Consensus       310 ~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G  389 (638)
T 3sbq_A          310 GKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG  389 (638)
T ss_dssp             TBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred             ccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC
Confidence                        123456788999999998876 459999998742      11       2222233456788999999


Q ss_pred             CEEEEEeCCCcEEEeC
Q 003842          777 GYVASASHDKFVKLWK  792 (792)
Q Consensus       777 ~~LaSgs~DG~I~IWd  792 (792)
                      ....|.--|..|..|+
T Consensus       390 ~aYTtlfidSqvvkWn  405 (638)
T 3sbq_A          390 NAYTTLFIDSQVVKWN  405 (638)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             ceEeeeeecceEEEEe
Confidence            5555555799999885

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.05  E-value=1.7  Score=43.27  Aligned_cols=175  Identities=10%  Similarity=-0.031  Sum_probs=93.4

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCC---c--eeEEecc-cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee------
Q 003842          565 SMPRLATSSFDKTVRVWDADNPG---Y--SLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC------  632 (792)
Q Consensus       565 dg~~Lasgs~Dg~V~IWdl~s~~---~--~i~~~~~-h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~------  632 (792)
                      ...+|++...| +|++=......   .  ....+-. .-..+.+++|+|++. |.++  .+|.++-.+..+...      
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s   78 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGR   78 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccc
Confidence            34466677777 65554444322   1  1222221 124677999999775 4434  678777776654211      


Q ss_pred             EEEee----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-------EEEecCCCCCeEEEEEcCCCCEEEEEeCCe
Q 003842          633 TRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-------RLSLQGHTKPIDSVCWDPSGELLASVSEDS  701 (792)
Q Consensus       633 ~~~~~----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~-------~~~l~~h~~~V~sv~~spdg~~Las~s~d~  701 (792)
                      ...+-    .....+.|.+++..+++  .||.|+-++..+...       ...-..-=..+..|.|.|+|.+.++. ++.
T Consensus        79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~  155 (236)
T 1tl2_A           79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ  155 (236)
T ss_dssp             CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred             ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence            11111    11366788888766666  669998887633110       11111111457899999999988888 556


Q ss_pred             EEEEECCCCCC--c-ceEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003842          702 VRVWTVGSGSE--G-ECVHELS-CNGNKFHSCVFHPTYPSLLVIGCYQSLE  748 (792)
Q Consensus       702 I~IwDl~s~~~--~-~~i~~~~-~~~~~i~si~fspdg~~L~sgs~dg~I~  748 (792)
                      ++-+...+...  . .....+- ..-.....+.|.+++..+++.  ++.|+
T Consensus       156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence            44333221110  0 0111111 222345556788888755555  66443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.86  E-value=0.19  Score=59.34  Aligned_cols=149  Identities=14%  Similarity=0.195  Sum_probs=82.3

Q ss_pred             CCCEEEEEeCC------CeEEEEECCCCceeE--EeccCCCCEEEEEECCCCCeEEEEeCCC--cEEEEeCCCCCceeEE
Q 003842          523 DGKLLATGGHD------KKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRT  592 (792)
Q Consensus       523 dg~~Lasgs~D------g~I~vWdl~t~~~~~--~l~~h~~~V~~i~fspdg~~Lasgs~Dg--~V~IWdl~s~~~~i~~  592 (792)
                      ++++++.|+.+      ..+.+||..+.+-..  .+......- +++...++++++.|+.++  .+.+||+.+.......
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            77777887754      358889988753322  222222222 233334788888888765  6899999874322111


Q ss_pred             ----ecccCCCeEEEEEcCCCCeEEEEEeC--C-----CcEEEEEcCCCe------eEEEeeC----Ce-eEEEEecCCC
Q 003842          593 ----FMGHSASVMSLDFHPNKDDLICSCDG--D-----GEIRYWSINNGS------CTRVFKG----GT-AQMRFQPHLG  650 (792)
Q Consensus       593 ----~~~h~~~V~sl~fspd~~~ll~sgs~--D-----g~I~iwdl~~~~------~~~~~~~----~~-~~v~~sp~~~  650 (792)
                          .........++.+..+.+.+++.|+.  +     ..+.+||+.+..      .......    .. ..+....++.
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~  609 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK  609 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence                11112222335555553567767765  2     458999998877      2222111    11 1233333245


Q ss_pred             EEEEEEc--------CCeEEEEECCCCeEE
Q 003842          651 RYLAAAA--------ENVVSILDAETQACR  672 (792)
Q Consensus       651 ~lla~s~--------dg~I~i~D~~t~~~~  672 (792)
                      .+++|+.        ...|.+||+.+.+-.
T Consensus       610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            5555553        346999999887654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.33  E-value=8  Score=42.89  Aligned_cols=226  Identities=14%  Similarity=0.090  Sum_probs=115.1

Q ss_pred             CCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCC--ceeEEec---------ccCCCeEEEEEcCC---CCeEEEEEeC-
Q 003842          555 SLITDVRFSPSMP-RLATSSFDKTVRVWDADNPG--YSLRTFM---------GHSASVMSLDFHPN---KDDLICSCDG-  618 (792)
Q Consensus       555 ~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s~~--~~i~~~~---------~h~~~V~sl~fspd---~~~ll~sgs~-  618 (792)
                      ..-+.|+|.|++. .|+++...|.|++++.+...  ..+..+.         ........|+|+|+   +..++++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4568999999996 56667788999999764311  1222221         11356789999996   2334333322 


Q ss_pred             -C----------CcEEEEEcCCC----------eeEEEee-----CCeeEEEEecCCCEEEEEEcCC-------------
Q 003842          619 -D----------GEIRYWSINNG----------SCTRVFK-----GGTAQMRFQPHLGRYLAAAAEN-------------  659 (792)
Q Consensus       619 -D----------g~I~iwdl~~~----------~~~~~~~-----~~~~~v~~sp~~~~lla~s~dg-------------  659 (792)
                       +          ..|.-|.+..+          +.+..+.     .....+.|.|++..+++.+..+             
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~  173 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS  173 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence             1          14545665421          2222222     1245689999987666655432             


Q ss_pred             ----eEEEEECCCC---------------------eEEEEecCCCCCeEEEEEcCC-----CC-EEEEEeC---C--eEE
Q 003842          660 ----VVSILDAETQ---------------------ACRLSLQGHTKPIDSVCWDPS-----GE-LLASVSE---D--SVR  703 (792)
Q Consensus       660 ----~I~i~D~~t~---------------------~~~~~l~~h~~~V~sv~~spd-----g~-~Las~s~---d--~I~  703 (792)
                          .|.-+|.+..                     ..++. .+|.. ...++|+|.     |+ +++.+..   +  .-.
T Consensus       174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e  251 (463)
T 2wg3_C          174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR  251 (463)
T ss_dssp             SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred             CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence                2333343331                     00111 12222 346899996     44 3443321   1  123


Q ss_pred             EEECCCCCC---cceEEEeecCC-CceEEEEEeCC-------CCEEEEEEcCCeEEEEECCCCc----EEEEc-------
Q 003842          704 VWTVGSGSE---GECVHELSCNG-NKFHSCVFHPT-------YPSLLVIGCYQSLELWNMSENK----TMTLT-------  761 (792)
Q Consensus       704 IwDl~s~~~---~~~i~~~~~~~-~~i~si~fspd-------g~~L~sgs~dg~I~IwDl~~~~----~~~~~-------  761 (792)
                      |..+..+..   ...+..+..+. ..+..+.|-..       +. ++++...+.|....++...    ...+.       
T Consensus       252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~-~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~  330 (463)
T 2wg3_C          252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGS-YVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSC  330 (463)
T ss_dssp             EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTC-EEEEETTSCEEEEEC-----CCEEEEECEEETTSS
T ss_pred             EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcce-EEEecCCCcEEEEEeCCCCceeeEEEeecCCcccc
Confidence            444433321   12344443221 45667776432       23 4555555777766665432    11221       


Q ss_pred             --ccCCCeEEEEEeCCCCEEEEEe
Q 003842          762 --AHEGLIAALAVSTETGYVASAS  783 (792)
Q Consensus       762 --~h~~~V~sl~fspdg~~LaSgs  783 (792)
                        .....+.++.+.|||.++++..
T Consensus       331 ~~~~~~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          331 RGYFSGHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             CSCCCSEEEEEEECTTCCEEEEEE
T ss_pred             cccccCcceEEEECCCCCEEEEec
Confidence              1235789999999999887765

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=94.25  E-value=7.1  Score=42.05  Aligned_cols=186  Identities=10%  Similarity=0.091  Sum_probs=102.1

Q ss_pred             cEEEEeCCCCC-ceeEEecc------cCCCeEEEEEc---CC----CCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeE
Q 003842          577 TVRVWDADNPG-YSLRTFMG------HSASVMSLDFH---PN----KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ  642 (792)
Q Consensus       577 ~V~IWdl~s~~-~~i~~~~~------h~~~V~sl~fs---pd----~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~  642 (792)
                      .|.+||+.++. ..++.+.-      ....+..|.+.   +.    +.+..++=..++.|.++|+.+++.-+.....   
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~---  200 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT---  200 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG---
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC---
Confidence            36677777631 44444432      23457788877   22    2333334445788999999999887765321   


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC----CCEEEEEeCCeEEEEECCC-----CCCc
Q 003842          643 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS----GELLASVSEDSVRVWTVGS-----GSEG  713 (792)
Q Consensus       643 v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd----g~~Las~s~d~I~IwDl~s-----~~~~  713 (792)
                        |.|+....+  .-+|.-.           .+   ...|..|+++|+    ++.|+......-++|.+.+     ....
T Consensus       201 --~~pd~~~~~--~i~G~~~-----------~~---~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~  262 (381)
T 3q6k_A          201 --FKAERPTKF--DYGGKEY-----------EF---KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGK  262 (381)
T ss_dssp             --GSCCSCEEE--EETTEEE-----------EE---CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCC
T ss_pred             --CccccCcce--EECCEEe-----------Ee---ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchh
Confidence              233311111  1122211           11   245899999998    7878777665445555432     2111


Q ss_pred             ceEEEeecCC--CceEEEEEe-CCCCEEEEEEcCCeEEEEECCC-C----cEE--EEcccCCCeEEEEEeCCCCEEEEEe
Q 003842          714 ECVHELSCNG--NKFHSCVFH-PTYPSLLVIGCYQSLELWNMSE-N----KTM--TLTAHEGLIAALAVSTETGYVASAS  783 (792)
Q Consensus       714 ~~i~~~~~~~--~~i~si~fs-pdg~~L~sgs~dg~I~IwDl~~-~----~~~--~~~~h~~~V~sl~fspdg~~LaSgs  783 (792)
                      ..+..+-...  ......++. .+|..+++--..+.|..|+..+ .    ...  .....-..+..+.+..++.+.+.++
T Consensus       263 ~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          263 LNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             CCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred             hceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence            2222222222  234455675 4665555556667999999876 1    112  2222233578888888887666554

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=93.98  E-value=8  Score=41.60  Aligned_cols=229  Identities=10%  Similarity=0.117  Sum_probs=116.2

Q ss_pred             CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc----------eeEEecc-cCCCeEEEEEcCCCCeEEEEEeCCCcEEE
Q 003842          556 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----------SLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRY  624 (792)
Q Consensus       556 ~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~----------~i~~~~~-h~~~V~sl~fspd~~~ll~sgs~Dg~I~i  624 (792)
                      .|..|+.  .....+.-..||.|+.|-....+.          ....+.. ....+..+++.....+.+ .-..||.|+.
T Consensus        54 ~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~-al~~~G~v~~  130 (389)
T 3kci_A           54 RPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCL-ALSSEGEVYS  130 (389)
T ss_dssp             CEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEE-EEETTSCEEE
T ss_pred             ceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEE-EEcCCCCEEE
Confidence            3444443  234566667889999996543111          1111221 223455566655544444 5567999999


Q ss_pred             EEcCCCe---------e--EEEee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----------eEEEEecC-CC
Q 003842          625 WSINNGS---------C--TRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-----------ACRLSLQG-HT  679 (792)
Q Consensus       625 wdl~~~~---------~--~~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~-----------~~~~~l~~-h~  679 (792)
                      |-....-         .  ...+.  .....+.+.......++...+|.|+.|-....           .....+.. ..
T Consensus       131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~  210 (389)
T 3kci_A          131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG  210 (389)
T ss_dssp             EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred             EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC
Confidence            9654310         0  11111  11233445555677788888999999965321           11111211 23


Q ss_pred             CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC------c--ceEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003842          680 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------G--ECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLEL  749 (792)
Q Consensus       680 ~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~------~--~~i~~~~~-~~~~i~si~fspdg~~L~sgs~dg~I~I  749 (792)
                      ..|..|+......+.++...+ .|+.|-......      .  .....+.. ....|..++..  ..+.++...+|.|+.
T Consensus       211 ~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~  288 (389)
T 3kci_A          211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYT  288 (389)
T ss_dssp             SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred             CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEE
Confidence            456666654433445555555 899997543110      0  01111111 12235544443  345666678899999


Q ss_pred             EECCCC---------c---EEEEccc-CCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          750 WNMSEN---------K---TMTLTAH-EGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       750 wDl~~~---------~---~~~~~~h-~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      |-....         .   +..+..- ...|..|+..  ....+....||.|+.|
T Consensus       289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~w  341 (389)
T 3kci_A          289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTW  341 (389)
T ss_dssp             EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred             EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEe
Confidence            965421         1   1122211 2345555543  3344445678888887

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=93.97  E-value=6.6  Score=46.75  Aligned_cols=145  Identities=14%  Similarity=0.109  Sum_probs=77.8

Q ss_pred             CCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeEEeccC-------CCCEEEEEECCCC-CeEEEEeCCCc----E
Q 003842          512 TSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSPSM-PRLATSSFDKT----V  578 (792)
Q Consensus       512 ~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h-------~~~V~~i~fspdg-~~Lasgs~Dg~----V  578 (792)
                      .+.|.+|+++|. ...+++++..+.|...+ +.++.-..+..+       ...|.+|++.|.. ..++++..+..    .
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~   92 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   92 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence            458999999985 45667777777766554 334333333322       2469999999843 44544443211    4


Q ss_pred             EEEeCCCCCceeEEeccc---------CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---------CCe
Q 003842          579 RVWDADNPGYSLRTFMGH---------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGT  640 (792)
Q Consensus       579 ~IWdl~s~~~~i~~~~~h---------~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---------~~~  640 (792)
                      .||.-...+..-..+...         ...+..|+++|.....++.+...+.|. .....++.-..+.         ..+
T Consensus        93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~  171 (789)
T 1sqj_A           93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY  171 (789)
T ss_dssp             EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred             EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence            455544445444333210         113567888887655666665444332 1222222211111         234


Q ss_pred             eEEEEecCC-CEEEEEEcC
Q 003842          641 AQMRFQPHL-GRYLAAAAE  658 (792)
Q Consensus       641 ~~v~~sp~~-~~lla~s~d  658 (792)
                      ..+.+.|.. +.++++..+
T Consensus       172 ~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          172 TSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             EEEEECTTSTTCEEEEESS
T ss_pred             EEEEECCCCCCEEEEEEcC
Confidence            567777754 466666654

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=93.42  E-value=7.1  Score=41.15  Aligned_cols=260  Identities=9%  Similarity=0.035  Sum_probs=133.1

Q ss_pred             CEEEEEeCCCeEEEEECCCCce-------e--EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE---eCCCC-----C
Q 003842          525 KLLATGGHDKKAVLWHTDTLKS-------K--TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW---DADNP-----G  587 (792)
Q Consensus       525 ~~Lasgs~Dg~I~vWdl~t~~~-------~--~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW---dl~s~-----~  587 (792)
                      .++++.+.+|.|+--.+.+.+.       +  ..++ ..+.+..+........|+.-+..|.++..   ++...     +
T Consensus         4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G   82 (327)
T 3uc1_A            4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG   82 (327)
T ss_dssp             EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred             cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence            3677778888888665432111       1  1122 23345555444455566666677766544   44321     1


Q ss_pred             ceeEEec--ccCCCeEEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeE-------EEeeC--CeeEEEEecCCCEEEE
Q 003842          588 YSLRTFM--GHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCT-------RVFKG--GTAQMRFQPHLGRYLA  654 (792)
Q Consensus       588 ~~i~~~~--~h~~~V~sl~fspd--~~~ll~sgs~Dg~I~iwdl~~~~~~-------~~~~~--~~~~v~~sp~~~~lla  654 (792)
                      ..+..+.  .....|.++....+  ...+++..+.+|.|+...+......       ..++.  ....+........++.
T Consensus        83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill  162 (327)
T 3uc1_A           83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL  162 (327)
T ss_dssp             EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred             EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence            2211111  12345655544332  2446668899999999987653221       12222  2333444455678999


Q ss_pred             EEcCCeEEEEECC--CC---------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc----ceEEE
Q 003842          655 AAAENVVSILDAE--TQ---------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG----ECVHE  718 (792)
Q Consensus       655 ~s~dg~I~i~D~~--t~---------~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~----~~i~~  718 (792)
                      .+..|.+..+...  .-         .....+. ....|.++...+++.+|+..+.. .++.-.+......    .-+..
T Consensus       163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~  241 (327)
T 3uc1_A          163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT  241 (327)
T ss_dssp             EETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred             EECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence            9999998888776  21         1111222 33457777666666677777776 7777776433211    12222


Q ss_pred             ee--cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-------EEc--ccCCCeEEEEEeC-CCCEEEEEeCCC
Q 003842          719 LS--CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-------TLT--AHEGLIAALAVST-ETGYVASASHDK  786 (792)
Q Consensus       719 ~~--~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-------~~~--~h~~~V~sl~fsp-dg~~LaSgs~DG  786 (792)
                      +.  .....+..+....+...|+..+.+|.+.-++...-...       ...  .....|.++...+ +...+.+.+++|
T Consensus       242 ~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g  321 (327)
T 3uc1_A          242 VMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG  321 (327)
T ss_dssp             SCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred             EEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence            22  22344555555555667888888888777776442211       111  2234566665544 334466666655

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.39  E-value=2.1  Score=44.19  Aligned_cols=239  Identities=13%  Similarity=0.052  Sum_probs=115.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec
Q 003842          515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM  594 (792)
Q Consensus       515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~  594 (792)
                      |..|+....- .++. . ||.|+.|-......+..-......|..|+...+- .++. . ||.|+.|-....+..-. -.
T Consensus        26 i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~-P~   98 (282)
T 3qhy_B           26 VDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV-PA   98 (282)
T ss_dssp             CCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC-CG
T ss_pred             CcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC-Cc
Confidence            5555544332 2233 4 8888888765422211111123357777765443 3333 4 89999998765332211 11


Q ss_pred             ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003842          595 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL  673 (792)
Q Consensus       595 ~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~-~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~  673 (792)
                      .-...|..|+....  +.+ .-. ||.|+.|-.+..-.+. ..........+.......++.. ||.|+.|-......+.
T Consensus        99 ~~~~~v~~ia~G~~--hs~-al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg  173 (282)
T 3qhy_B           99 EARSGVDAIAAGAW--ASY-ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTT  173 (282)
T ss_dssp             GGSSSEEEEEEETT--EEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTS
T ss_pred             ccCCCeEEEECcCC--EEE-EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCC
Confidence            12346777776543  333 334 9999999765422111 0011111222333334444444 7888888765421110


Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003842          674 SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       674 ~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~  753 (792)
                      .-......|..|+.-.+. .++. .++.|+.|-.........   -......|..++....  +.++.. +|.|+.|-..
T Consensus       174 ~p~~~~~~v~~i~~G~~h-s~al-~~G~v~~wG~n~~gqlg~---p~~~~~~v~~i~~G~~--h~~al~-~g~v~~wG~n  245 (282)
T 3qhy_B          174 VPAEAQSGVDDVAGGIFH-SLAL-KDGKVIAWGDNRYKQTTV---PTEALSGVSAIASGEW--YSLALK-NGKVIAWGSS  245 (282)
T ss_dssp             CCGGGGSSEEEEEECSSE-EEEE-ETTEEEEEECCTTSTTCC---CGGGGSSCCEEEECSS--CEEEEE-TTEEEEESTT
T ss_pred             CceecCCCeEEEEecCCE-EEEE-ECCeEEEEECCCCCCCCC---CcccCCCceEEEcCCC--EEEEEE-CCEEEEecCC
Confidence            000112456666654333 2333 444888987654321110   0011123555554333  333444 8999999765


Q ss_pred             CCcEEEEcccCCCeEEEEEeCCC
Q 003842          754 ENKTMTLTAHEGLIAALAVSTET  776 (792)
Q Consensus       754 ~~~~~~~~~h~~~V~sl~fspdg  776 (792)
                      ....+.+   ...|..++.....
T Consensus       246 ~~gq~~v---~~~v~~iaaG~~h  265 (282)
T 3qhy_B          246 RTAPSSV---QSGVSSIEAGPNA  265 (282)
T ss_dssp             CCCCGGG---SSCEEEEEECSSC
T ss_pred             CCccccC---CCCcEEEEECcCe
Confidence            5433221   3357777665443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.03  E-value=1.9  Score=44.60  Aligned_cols=215  Identities=14%  Similarity=0.060  Sum_probs=107.6

Q ss_pred             CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE
Q 003842          555 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR  634 (792)
Q Consensus       555 ~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~  634 (792)
                      ..|..|+....- .++. . ||.|+.|-....+..-. -......|..|+....  +.++. . ||.|+.|-.+..-.+.
T Consensus        24 ~~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~-p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg   95 (282)
T 3qhy_B           24 SGVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTT   95 (282)
T ss_dssp             SSCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSC-CGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred             CCCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCC-CccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCC
Confidence            357777765432 2333 4 99999998765332211 1112335667766533  34434 4 8999999866422111


Q ss_pred             ---EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCC
Q 003842          635 ---VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS  711 (792)
Q Consensus       635 ---~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~  711 (792)
                         .+...+..++  ......++.. +|.|+.|-....-.+-........|..|+.-.+..++  ..++.|+.|-.....
T Consensus        96 ~P~~~~~~v~~ia--~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~--l~~G~v~~wG~n~~g  170 (282)
T 3qhy_B           96 VPAEARSGVDAIA--AGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA--VKNGGVIAWGDNYFG  170 (282)
T ss_dssp             CCGGGSSSEEEEE--EETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE--EETTEEEEEECCTTS
T ss_pred             CCcccCCCeEEEE--CcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE--EECCEEEEecCCCCC
Confidence               1112333333  3344556666 9999999765421110001122346666654333222  334588888765432


Q ss_pred             CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003842          712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL  790 (792)
Q Consensus       712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I  790 (792)
                      ....   .......|..++....  +.++. .+|.|+.|-......+ .-......|..|+...+. .++..  ||.|+.
T Consensus       171 qlg~---p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~  241 (282)
T 3qhy_B          171 QTTV---PAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVIA  241 (282)
T ss_dssp             TTSC---CGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEEE
T ss_pred             CCCC---ceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEEE
Confidence            2110   0001234555554333  33444 6899999976543222 111222356666654433 33333  888888


Q ss_pred             e
Q 003842          791 W  791 (792)
Q Consensus       791 W  791 (792)
                      |
T Consensus       242 w  242 (282)
T 3qhy_B          242 W  242 (282)
T ss_dssp             E
T ss_pred             e
Confidence            7

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=92.84  E-value=13  Score=40.43  Aligned_cols=227  Identities=8%  Similarity=0.050  Sum_probs=115.4

Q ss_pred             CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-----------eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEE
Q 003842          555 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-----------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR  623 (792)
Q Consensus       555 ~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~-----------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~  623 (792)
                      ..|..|+..  ....+.-..||.|+.|-....+.           ..-........|..|+...   ...+.-..||.|+
T Consensus        75 ~~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~---~hs~al~~~G~v~  149 (423)
T 3mvd_K           75 PDAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD---SHSACLLEDGRVF  149 (423)
T ss_dssp             SSEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS---SEEEEEETTSCEE
T ss_pred             CCceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc---CeEEEEeCCCeEE
Confidence            346666654  44666777899999996643211           1111111234566666543   2333556799999


Q ss_pred             EEEc--CC-Cee---------E-EEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC---------------------
Q 003842          624 YWSI--NN-GSC---------T-RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ---------------------  669 (792)
Q Consensus       624 iwdl--~~-~~~---------~-~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~---------------------  669 (792)
                      .|-.  .. +.+         . ..+......+.+.....+.++...+|.|+.|-....                     
T Consensus       150 ~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~  229 (423)
T 3mvd_K          150 AWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRD  229 (423)
T ss_dssp             EEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTT
T ss_pred             EEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccc
Confidence            9985  22 221         0 011122234445555667788888999999964321                     


Q ss_pred             --eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC--------cceEEEeecCCCceEEEEEeCCCCEE
Q 003842          670 --ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE--------GECVHELSCNGNKFHSCVFHPTYPSL  738 (792)
Q Consensus       670 --~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~--------~~~i~~~~~~~~~i~si~fspdg~~L  738 (792)
                        .+..........|..|+.... ..++....+ .|+.|-......        .............|..++.  -..+.
T Consensus       230 ~~~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~ht  306 (423)
T 3mvd_K          230 LLRPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHHT  306 (423)
T ss_dssp             TSSCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSEE
T ss_pred             ccCCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCeE
Confidence              111111112234555554322 122222344 788886543210        1111111112334554443  34566


Q ss_pred             EEEEcCCeEEEEECCCC---------c----EEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          739 LVIGCYQSLELWNMSEN---------K----TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       739 ~sgs~dg~I~IwDl~~~---------~----~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      ++...+|.|+.|-....         .    +..+..-...|..|+....  +.+....||.|+.|
T Consensus       307 ~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~w  370 (423)
T 3mvd_K          307 VILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSW  370 (423)
T ss_dssp             EEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEE
T ss_pred             EEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEE
Confidence            77788899999965321         1    1122222335777766533  33344678888888

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=92.71  E-value=20  Score=42.49  Aligned_cols=143  Identities=13%  Similarity=0.176  Sum_probs=72.8

Q ss_pred             CCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCceeEEeccc-------CCCeEEEEEcCCCCeEEEEEeCCCc----
Q 003842          554 SSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDGDGE----  621 (792)
Q Consensus       554 ~~~V~~i~fspd-g~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h-------~~~V~sl~fspd~~~ll~sgs~Dg~----  621 (792)
                      ...|.+|+++|. ...+++++..+.|...+  ..+.....+..+       ...|.+|++.|.+...++.+..+..    
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~   91 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW   91 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence            468999999995 45677777777665444  334444444332       2469999999865444444432211    


Q ss_pred             EEEE-EcCCCeeEEEeeC------------CeeEEEEecCCC-EEEEEEcCCeEEEEECCCC---eEEEEec---CCCCC
Q 003842          622 IRYW-SINNGSCTRVFKG------------GTAQMRFQPHLG-RYLAAAAENVVSILDAETQ---ACRLSLQ---GHTKP  681 (792)
Q Consensus       622 I~iw-dl~~~~~~~~~~~------------~~~~v~~sp~~~-~lla~s~dg~I~i~D~~t~---~~~~~l~---~h~~~  681 (792)
                      -.|| ....++.-..+..            .+..+++.|... .++++...+.|.. ..+.+   +.+..+.   .....
T Consensus        92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~  170 (789)
T 1sqj_A           92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIG  170 (789)
T ss_dssp             CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTC
T ss_pred             cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCC
Confidence            2333 3333332222211            124577777643 4455443443322 22222   2221111   11245


Q ss_pred             eEEEEEcCC-CCEEEEEeC
Q 003842          682 IDSVCWDPS-GELLASVSE  699 (792)
Q Consensus       682 V~sv~~spd-g~~Las~s~  699 (792)
                      +..|.++|. +..|+++..
T Consensus       171 ~~~i~~~p~~~~~~~~~~~  189 (789)
T 1sqj_A          171 YTSVIFDPERNGTIYASAT  189 (789)
T ss_dssp             EEEEEECTTSTTCEEEEES
T ss_pred             eEEEEECCCCCCEEEEEEc
Confidence            788999884 445555543

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=91.46  E-value=12  Score=38.39  Aligned_cols=206  Identities=9%  Similarity=-0.028  Sum_probs=99.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEE---CCCCceeEEeccCCCCEEEEEECC--CCCeEEEEeCCCcEEEEeCCCC-
Q 003842          513 SKVICCHFSSDGKLLATGGHDKKAVLWH---TDTLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDADNP-  586 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~Dg~I~vWd---l~t~~~~~~l~~h~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWdl~s~-  586 (792)
                      +.+.++.......+|+.-+.+|.++--.   +..+.....+. ....|..+.. .  +..++++++.+|.|+...+..- 
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~  101 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE  101 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence            4566655555555677777788776543   32221111133 3556666654 4  4678999999999999987642 


Q ss_pred             ----CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEE
Q 003842          587 ----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVS  662 (792)
Q Consensus       587 ----~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~  662 (792)
                          +.....+. ..+.+..+........++ ..+..|.++.++...-.....-                     ..-+.
T Consensus       102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~il-l~T~~G~~~r~~~~eip~~gR~---------------------a~Gv~  158 (276)
T 3no0_A          102 YKAQGMPIIKLT-EGDEVVSIASSVDETHIL-LFTKKGRVARFSVREVPPSTPG---------------------ARGVQ  158 (276)
T ss_dssp             TCSTTEECSCCC-TTCCEEEEEECCSSCEEE-EEETTSEEEEEEGGGSCBCCTT---------------------CCCEE
T ss_pred             hhcCCeEEEecC-CCCEEEEEEEeCCCCEEE-EEECCCEEEEEEhhhCCCcCCC---------------------CCCEE
Confidence                11111122 123344443333323333 4455666655554321110000                     00011


Q ss_pred             EEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC----cceEEEeecCCCceEEEEEeCCCCE
Q 003842          663 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE----GECVHELSCNGNKFHSCVFHPTYPS  737 (792)
Q Consensus       663 i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~----~~~i~~~~~~~~~i~si~fspdg~~  737 (792)
                      ..+         +. ....|..+....++.+|+..+.. .++...+.....    .+-+..+ .....+..+....+...
T Consensus       159 ~i~---------L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~  227 (276)
T 3no0_A          159 GIK---------LE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVE  227 (276)
T ss_dssp             CCC---------CC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEE
T ss_pred             EEc---------cC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCE
Confidence            111         11 12334444433445566666655 677766543211    1122222 22344544444444456


Q ss_pred             EEEEEcCCeEEE--EECCC
Q 003842          738 LLVIGCYQSLEL--WNMSE  754 (792)
Q Consensus       738 L~sgs~dg~I~I--wDl~~  754 (792)
                      ++..+.+|.+..  ++..+
T Consensus       228 i~~~t~~G~~ir~~~~~~~  246 (276)
T 3no0_A          228 LLITTKNGKAFYDKINQKD  246 (276)
T ss_dssp             EEEEETTSCEEEEEEEGGG
T ss_pred             EEEEcCCCeEEEeeeCHHH
Confidence            777788887777  76644

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=89.77  E-value=22  Score=37.30  Aligned_cols=69  Identities=6%  Similarity=-0.039  Sum_probs=40.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECC---------CCceeEE---eccCCCCEEEE-EECC--CCCeEEEEeCCCcEE
Q 003842          515 VICCHFSSDGKLLATGGHDKKAVLWHTD---------TLKSKTN---LEEHSSLITDV-RFSP--SMPRLATSSFDKTVR  579 (792)
Q Consensus       515 V~~lafspdg~~Lasgs~Dg~I~vWdl~---------t~~~~~~---l~~h~~~V~~i-~fsp--dg~~Lasgs~Dg~V~  579 (792)
                      +..+........|+..+..|.++-+...         .|..+..   +. ....|..+ ....  ++.+|+.++.+|.++
T Consensus        41 l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iK  119 (323)
T 1wp5_A           41 LLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVK  119 (323)
T ss_dssp             EEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEE
T ss_pred             EEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEE
Confidence            4444444445577777788887766542         1221111   22 23345544 4432  256899999999999


Q ss_pred             EEeCC
Q 003842          580 VWDAD  584 (792)
Q Consensus       580 IWdl~  584 (792)
                      ...+.
T Consensus       120 rt~l~  124 (323)
T 1wp5_A          120 KTELK  124 (323)
T ss_dssp             EEEGG
T ss_pred             EeEHH
Confidence            98875

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=87.47  E-value=25  Score=36.93  Aligned_cols=178  Identities=13%  Similarity=0.087  Sum_probs=102.3

Q ss_pred             eEEEEEeCCCcEEEEEcCCCee-------EE--Eee--CCeeEEEEecCCCEEEEEEcCCeEEEEEC---CC------Ce
Q 003842          611 DLICSCDGDGEIRYWSINNGSC-------TR--VFK--GGTAQMRFQPHLGRYLAAAAENVVSILDA---ET------QA  670 (792)
Q Consensus       611 ~ll~sgs~Dg~I~iwdl~~~~~-------~~--~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~---~t------~~  670 (792)
                      .++++.+.+|.|+--.+.+.+.       +.  .++  ..+..+........++..+..|.++.+..   ..      +.
T Consensus         4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~   83 (327)
T 3uc1_A            4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ   83 (327)
T ss_dssp             EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred             cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence            4566778888888766432111       11  111  12333444455677888888887666543   21      22


Q ss_pred             EEEEecC--CCCCeEEEEEcC---CCCEEEEEeCC-eEEEEECCCCCCcc--eE--EEeecCCCceEEEEEeCCCCEEEE
Q 003842          671 CRLSLQG--HTKPIDSVCWDP---SGELLASVSED-SVRVWTVGSGSEGE--CV--HELSCNGNKFHSCVFHPTYPSLLV  740 (792)
Q Consensus       671 ~~~~l~~--h~~~V~sv~~sp---dg~~Las~s~d-~I~IwDl~s~~~~~--~i--~~~~~~~~~i~si~fspdg~~L~s  740 (792)
                      .+..+..  ....|.++....   +..+++..+.+ .|+...+.......  -+  ..+.. +..+..+........|+.
T Consensus        84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill  162 (327)
T 3uc1_A           84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLL  162 (327)
T ss_dssp             EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEE
T ss_pred             EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEE
Confidence            2211111  234455554333   46788888877 88888875532211  11  12222 345666666666678999


Q ss_pred             EEcCCeEEEEECC--CCcEE----------EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003842          741 IGCYQSLELWNMS--ENKTM----------TLTAHEGLIAALAVSTETGYVASASHDKFVKL  790 (792)
Q Consensus       741 gs~dg~I~IwDl~--~~~~~----------~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I  790 (792)
                      .+..|.+..+...  .-...          .+ .....|.++....++.+|+.++..|.++.
T Consensus       163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr  223 (327)
T 3uc1_A          163 VSANGQSIRFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKR  223 (327)
T ss_dssp             EETTSEEEEEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEE
T ss_pred             EECCCeEEEEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEE
Confidence            9999988888776  32111          12 23455777766666778889999998874

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=86.72  E-value=37  Score=36.39  Aligned_cols=162  Identities=9%  Similarity=0.093  Sum_probs=90.2

Q ss_pred             eEEEEECCCC--ceeEEecc------CCCCEEEEEEC---CC----CCeEEEE-eCCCcEEEEeCCCCCceeEEec----
Q 003842          535 KAVLWHTDTL--KSKTNLEE------HSSLITDVRFS---PS----MPRLATS-SFDKTVRVWDADNPGYSLRTFM----  594 (792)
Q Consensus       535 ~I~vWdl~t~--~~~~~l~~------h~~~V~~i~fs---pd----g~~Lasg-s~Dg~V~IWdl~s~~~~i~~~~----  594 (792)
                      +|.+||+.+.  +.++++.-      ....+.+|++.   ++    +.+++.+ +.++-|.|||+.+ +...+.+.    
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~-~~swRv~~~~~~  202 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKK-QDSWNVTHPTFK  202 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTT-TEEEEEECGGGS
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCC-CcEEEEccCCCc
Confidence            6889999998  88877653      23567888887   22    3344444 3467799999987 33333321    


Q ss_pred             ----------cc----CCCeEEEEEcCC----CCeEEEEEeCCCcEEEEE---cCCC---eeEEEe--eCC-ee--EEEE
Q 003842          595 ----------GH----SASVMSLDFHPN----KDDLICSCDGDGEIRYWS---INNG---SCTRVF--KGG-TA--QMRF  645 (792)
Q Consensus       595 ----------~h----~~~V~sl~fspd----~~~ll~sgs~Dg~I~iwd---l~~~---~~~~~~--~~~-~~--~v~~  645 (792)
                                +.    ...|..|+++|+    ++.|.+..-....++-..   ++..   ..++.+  ++. ..  .+++
T Consensus       203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~  282 (381)
T 3q6k_A          203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY  282 (381)
T ss_dssp             CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred             cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence                      10    246788888887    555555544333333333   1111   112222  111 22  3445


Q ss_pred             ecCCCEEEE-EEcCCeEEEEECCC-C------eEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 003842          646 QPHLGRYLA-AAAENVVSILDAET-Q------ACRLSLQGHTKPIDSVCWDPSGELLASVS  698 (792)
Q Consensus       646 sp~~~~lla-~s~dg~I~i~D~~t-~------~~~~~l~~h~~~V~sv~~spdg~~Las~s  698 (792)
                      .+..+.++. --..+.|..|+..+ .      ..+.. ...-..+..+.+..+|.+.+...
T Consensus       283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~-d~~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT-SSRFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE-CTTCCSEEEEEECTTSCEEEEEC
T ss_pred             eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE-CCCccccCeEEECCCCeEEEEEC
Confidence            434455444 44578999999876 1      22222 11334577788877776555443

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=84.90  E-value=39  Score=35.03  Aligned_cols=228  Identities=10%  Similarity=0.048  Sum_probs=121.7

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCcee---------EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC---C---
Q 003842          522 SDGKLLATGGHDKKAVLWHTDTLKSK---------TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN---P---  586 (792)
Q Consensus       522 pdg~~Lasgs~Dg~I~vWdl~t~~~~---------~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s---~---  586 (792)
                      ++..++++.+.+|.|+-..+...+..         ..++. .+.+..+........++..+..|.++-+....   .   
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            45668889999999998876543221         11222 33445555544556788888888877665542   1   


Q ss_pred             --Cce---eEEecccCCCeEEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCee-------EEEeeC--CeeEEEEecCCC
Q 003842          587 --GYS---LRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSC-------TRVFKG--GTAQMRFQPHLG  650 (792)
Q Consensus       587 --~~~---i~~~~~h~~~V~sl~fspd--~~~ll~sgs~Dg~I~iwdl~~~~~-------~~~~~~--~~~~v~~sp~~~  650 (792)
                        +..   ...+. ....|.++...++  ....++..+..|.++...+.....       ...++.  .+..+.......
T Consensus        85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~  163 (312)
T 1suu_A           85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE  163 (312)
T ss_dssp             ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred             CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence              110   01122 2334555543321  223445778899999988754321       112222  233344444567


Q ss_pred             EEEEEEcCCeEEEEECCC---------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC----cceE
Q 003842          651 RYLAAAAENVVSILDAET---------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE----GECV  716 (792)
Q Consensus       651 ~lla~s~dg~I~i~D~~t---------~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~----~~~i  716 (792)
                      .++..+.+|.+..+....         +.....+. ....|.++....++..|++.+.. .++.+++.....    ..-+
T Consensus       164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv  242 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGY  242 (312)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred             EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCE
Confidence            899999999988887643         12222233 23456666655556666666666 777787743211    1112


Q ss_pred             EEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003842          717 HELS---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM  752 (792)
Q Consensus       717 ~~~~---~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl  752 (792)
                      ..+.   .....+..+....+...++..+..|.+.-...
T Consensus       243 ~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~  281 (312)
T 1suu_A          243 TSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA  281 (312)
T ss_dssp             ECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred             EeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            2222   22234444333345556666677775443444

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=84.78  E-value=45  Score=35.59  Aligned_cols=230  Identities=10%  Similarity=0.034  Sum_probs=124.5

Q ss_pred             cCCCCEEEEEeCCCeEEEEECCC---------CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC---CCC--
Q 003842          521 SSDGKLLATGGHDKKAVLWHTDT---------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA---DNP--  586 (792)
Q Consensus       521 spdg~~Lasgs~Dg~I~vWdl~t---------~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl---~s~--  586 (792)
                      -++..++++.+.+|.|+--.+..         +.....++. .+.+..+........|+..+..|.++-+..   ...  
T Consensus         4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r   82 (370)
T 3l6v_A            4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS   82 (370)
T ss_dssp             CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred             ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence            46777999999999999865532         222233333 455655555555667777788887665543   221  


Q ss_pred             ---CceeE---EecccCCCeEEEEEcC--CCCeEEEEEeCCCcEEEEEcCCCee-------EEEeeC--CeeEEEEecCC
Q 003842          587 ---GYSLR---TFMGHSASVMSLDFHP--NKDDLICSCDGDGEIRYWSINNGSC-------TRVFKG--GTAQMRFQPHL  649 (792)
Q Consensus       587 ---~~~i~---~~~~h~~~V~sl~fsp--d~~~ll~sgs~Dg~I~iwdl~~~~~-------~~~~~~--~~~~v~~sp~~  649 (792)
                         +..+.   .+. ....|.++....  +...+|+.++..|.++...+.....       ...++.  ....+......
T Consensus        83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~  161 (370)
T 3l6v_A           83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD  161 (370)
T ss_dssp             TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred             ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence               11111   122 334565554432  1233566888999999988754321       111222  22334444455


Q ss_pred             CEEEEEEcCCeEEEEECCC---------CeEEEEecCCCCCeEEEEEcC-------------------------------
Q 003842          650 GRYLAAAAENVVSILDAET---------QACRLSLQGHTKPIDSVCWDP-------------------------------  689 (792)
Q Consensus       650 ~~lla~s~dg~I~i~D~~t---------~~~~~~l~~h~~~V~sv~~sp-------------------------------  689 (792)
                      ..++..+.+|.+..|+...         |.....+. ....|.++...+                               
T Consensus       162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~  240 (370)
T 3l6v_A          162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV  240 (370)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC-----------------------------
T ss_pred             ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence            6788888889888886532         11111222 234455554443                               


Q ss_pred             ----CCCEEEEEeCC-eEEEEECCCCCC----cceEE--EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003842          690 ----SGELLASVSED-SVRVWTVGSGSE----GECVH--ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       690 ----dg~~Las~s~d-~I~IwDl~s~~~----~~~i~--~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~  753 (792)
                          ++..|++.+.. ..+...+.....    ..-+.  .+....+.+..+.+..+...|+..+..|.+.-+.+.
T Consensus       241 ~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~  315 (370)
T 3l6v_A          241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS  315 (370)
T ss_dssp             ------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred             ccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence                34567777776 777777643211    11122  222223455555444555667777777766555543

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=84.39  E-value=41  Score=34.86  Aligned_cols=189  Identities=11%  Similarity=0.051  Sum_probs=102.7

Q ss_pred             CCCCCeEEEEeCCCcEEEEeCCCCC------ceeE--EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-
Q 003842          563 SPSMPRLATSSFDKTVRVWDADNPG------YSLR--TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-  633 (792)
Q Consensus       563 spdg~~Lasgs~Dg~V~IWdl~s~~------~~i~--~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~-  633 (792)
                      -++..++++.+.+|.|+-..+..-.      .-+.  .+. ..+.+..+........++ ..+..|.++-+....-... 
T Consensus         5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll-~~T~~G~~~~~~~~~ip~~~   82 (312)
T 1suu_A            5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLF-MISNEGKLYLINAYEIKDSS   82 (312)
T ss_dssp             ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCC--
T ss_pred             cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEE-EEECCCeEEEEEHHHCCCCC
Confidence            3466688999999999988765311      0111  122 223444444444434444 5667888777765421111 


Q ss_pred             -----------EEeeC--CeeEEEEec---CCCEEEEEEcCCeEEEEECCCC-------eEEEEecCCCCCeEEEEEcCC
Q 003842          634 -----------RVFKG--GTAQMRFQP---HLGRYLAAAAENVVSILDAETQ-------ACRLSLQGHTKPIDSVCWDPS  690 (792)
Q Consensus       634 -----------~~~~~--~~~~v~~sp---~~~~lla~s~dg~I~i~D~~t~-------~~~~~l~~h~~~V~sv~~spd  690 (792)
                                 -.+..  .+..+....   ...+++.++..|.++...+...       .....+.. .+.+..+....+
T Consensus        83 r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~  161 (312)
T 1suu_A           83 RASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFK  161 (312)
T ss_dssp             -----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECT
T ss_pred             ccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCC
Confidence                       01221  122222222   4577899999999998877432       22223333 455665555544


Q ss_pred             CCEEEEEeCC-eEEEEECCCC----CCcceEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003842          691 GELLASVSED-SVRVWTVGSG----SEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       691 g~~Las~s~d-~I~IwDl~s~----~~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~  754 (792)
                      +..|+..+.+ .+..+.+..-    ....-+..+.- .+..+..+....++..|++.+..|.++.+++..
T Consensus       162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            5555555555 7777776431    11112222222 244566666656677899999999999888754

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=82.66  E-value=78  Score=36.93  Aligned_cols=178  Identities=10%  Similarity=0.034  Sum_probs=95.8

Q ss_pred             EcCCCCeEEEEEeCCC----cEEEEEcCCCeeEEE-eeCCe----------eEEEEecCCCEEEEEEc-----------C
Q 003842          605 FHPNKDDLICSCDGDG----EIRYWSINNGSCTRV-FKGGT----------AQMRFQPHLGRYLAAAA-----------E  658 (792)
Q Consensus       605 fspd~~~ll~sgs~Dg----~I~iwdl~~~~~~~~-~~~~~----------~~v~~sp~~~~lla~s~-----------d  658 (792)
                      ++|+++.++++-+..|    .|+++|+.+++.+.. |....          ..++|. +.+.++++..           .
T Consensus       137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~~  215 (711)
T 4hvt_A          137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLYP  215 (711)
T ss_dssp             CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSSB
T ss_pred             cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCCC
Confidence            7888888887776655    699999999987642 22111          334787 4445554421           2


Q ss_pred             CeEEEEECCCC----eEEEEecCCCCCeEEEEEcCCCC-----EEEEEeCC----eEEEEECCCCCCcceEEEeecCCCc
Q 003842          659 NVVSILDAETQ----ACRLSLQGHTKPIDSVCWDPSGE-----LLASVSED----SVRVWTVGSGSEGECVHELSCNGNK  725 (792)
Q Consensus       659 g~I~i~D~~t~----~~~~~l~~h~~~V~sv~~spdg~-----~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~  725 (792)
                      ..|+.|.+-+.    ..++.-... ....++..+.+++     .+++.+.+    .+++.|.....  ..+..+......
T Consensus       216 ~~v~~~~~Gt~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~  292 (711)
T 4hvt_A          216 NSLYIWKRGESIEKAKKLFEVPKE-YIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKN--LKLQKINMPSDA  292 (711)
T ss_dssp             CEEEEEETTSCGGGCEEEEECCTT-SCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSS--CEEEECCSCTTC
T ss_pred             CEEEEEECCCChHHCeEEeccCCC-ceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCC--CcceEeecCCcc
Confidence            46888877653    334433322 2233455566766     24444433    45666654321  122222222211


Q ss_pred             eEEEEEeCCCCEEEEE----------EcCCeEEEEECCCC--------cEEEEc--ccCCCeEEEEEeCCCCEEEEEeCC
Q 003842          726 FHSCVFHPTYPSLLVI----------GCYQSLELWNMSEN--------KTMTLT--AHEGLIAALAVSTETGYVASASHD  785 (792)
Q Consensus       726 i~si~fspdg~~L~sg----------s~dg~I~IwDl~~~--------~~~~~~--~h~~~V~sl~fspdg~~LaSgs~D  785 (792)
                        .+..+.++.+++..          ...+.|.++|+.+.        ....+.  .....|..+.|..+ .++++...+
T Consensus       293 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~  369 (711)
T 4hvt_A          293 --TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDN  369 (711)
T ss_dssp             --EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEET
T ss_pred             --eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEEC
Confidence              12344455444432          13567999998763        222222  33446778888765 577777777


Q ss_pred             CcEE
Q 003842          786 KFVK  789 (792)
Q Consensus       786 G~I~  789 (792)
                      +.-+
T Consensus       370 ~~~~  373 (711)
T 4hvt_A          370 VVAK  373 (711)
T ss_dssp             TEEE
T ss_pred             CEEE
Confidence            6533

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=82.19  E-value=85  Score=36.86  Aligned_cols=145  Identities=12%  Similarity=0.124  Sum_probs=71.0

Q ss_pred             CCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCceeEEecc------------cCCCeEEEEEcCCC-CeEEEEEeC
Q 003842          553 HSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTFMG------------HSASVMSLDFHPNK-DDLICSCDG  618 (792)
Q Consensus       553 h~~~V~~i~fspdg-~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~------------h~~~V~sl~fspd~-~~ll~sgs~  618 (792)
                      -.+.|.+|+++|.+ ..++++...|.|..  ....++.-..+..            ....|.+|+++|.. +.+++.++.
T Consensus        19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~--S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~   96 (763)
T 3a0f_A           19 GGGFISGLVAHPTEKDLIYARTDIGGTYR--WNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGD   96 (763)
T ss_dssp             BCSCEEEEEECSSSTTCEEEEESSSCEEE--EETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECS
T ss_pred             CCCceeEEEeCCCCCCEEEEEeccCcEEE--ECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecc
Confidence            45689999999965 46667766665443  3333444333322            12458999999854 334433321


Q ss_pred             ----CCcEEEE-EcCCCeeEEEeeC----------Ce--eEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecC---
Q 003842          619 ----DGEIRYW-SINNGSCTRVFKG----------GT--AQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQG---  677 (792)
Q Consensus       619 ----Dg~I~iw-dl~~~~~~~~~~~----------~~--~~v~~sp~~-~~lla~s~dg~I~i~D~~t~~~~~~l~~---  677 (792)
                          .....|| ....++.-..+..          ..  ..+.+.|.. +.+++++.++.|.. ..+.++.-..+..   
T Consensus        97 ~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW~~~~~~~~  175 (763)
T 3a0f_A           97 YVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTWSRMNQLPD  175 (763)
T ss_dssp             CTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSCEECTTSCC
T ss_pred             cccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCccccccCcc
Confidence                1113333 3333432222211          11  257787764 45555555443332 2222222112211   


Q ss_pred             ---CCCCeEEEEEcCCC-CEEEEEeCC
Q 003842          678 ---HTKPIDSVCWDPSG-ELLASVSED  700 (792)
Q Consensus       678 ---h~~~V~sv~~spdg-~~Las~s~d  700 (792)
                         ....+..|+++|.. ..|+.+..+
T Consensus       176 ~~~~~~~~~~i~~~p~~~~~~~~~~~~  202 (763)
T 3a0f_A          176 SSTYGIGIISVIFDPKNVGTAYVASHA  202 (763)
T ss_dssp             CSCTTTCEEEEEECSSSTTCEEEEESS
T ss_pred             cCCCccceEEEEECCCCCCEEEEEEeC
Confidence               11347788888743 334444433

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=81.69  E-value=52  Score=34.01  Aligned_cols=222  Identities=12%  Similarity=0.047  Sum_probs=110.1

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCC--------ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-------
Q 003842          565 SMPRLATSSFDKTVRVWDADNPG--------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-------  629 (792)
Q Consensus       565 dg~~Lasgs~Dg~V~IWdl~s~~--------~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-------  629 (792)
                      +..++++.+.+|.|+--.+.+-.        .....+.. .+.+..+........++ ..+..|.++-+....       
T Consensus         2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll-~fT~~G~~~~~~~~elp~~~~~   79 (307)
T 1zi0_A            2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHIL-CFSSRGRVYSMKVYQLPEATRG   79 (307)
T ss_dssp             CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCCCCSS
T ss_pred             CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEE-EEECCCEEEEEEhhHCcCCCCC
Confidence            45678889999999877665310        01111222 23343443333334444 455677766665421       


Q ss_pred             --CeeEE---EeeCC--eeEEEEe---cCCCEEEEEEcCCeEEEEECCC-------CeEEEEecCCCCCeEEEEEcCCCC
Q 003842          630 --GSCTR---VFKGG--TAQMRFQ---PHLGRYLAAAAENVVSILDAET-------QACRLSLQGHTKPIDSVCWDPSGE  692 (792)
Q Consensus       630 --~~~~~---~~~~~--~~~v~~s---p~~~~lla~s~dg~I~i~D~~t-------~~~~~~l~~h~~~V~sv~~spdg~  692 (792)
                        |..+.   .+...  +..+...   .++.+++.++..|.++...+..       +.....+..+ +.+..+....+..
T Consensus        80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~  158 (307)
T 1zi0_A           80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED  158 (307)
T ss_dssp             SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred             CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence              22111   12222  2222221   2456789999999999887642       2222233333 4555554444444


Q ss_pred             EEEEEe-CCeEEEEECCCC----CCcceEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--------EE
Q 003842          693 LLASVS-EDSVRVWTVGSG----SEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--------TM  758 (792)
Q Consensus       693 ~Las~s-~d~I~IwDl~s~----~~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~--------~~  758 (792)
                      .|+..+ .+.+..++...-    ....-+..+.- .+..|.++....++..|++.+..|.++-.++....        ..
T Consensus       159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~  238 (307)
T 1zi0_A          159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI  238 (307)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred             EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence            444444 446666665322    11111221111 23456666555566789999999988888764321        11


Q ss_pred             --EEcccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003842          759 --TLTAHEGLIAALAVSTETGYVASASHDKFVK  789 (792)
Q Consensus       759 --~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~  789 (792)
                        .+..-.+.+..+....+..-|+..+.+|.+.
T Consensus       239 ~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~i  271 (307)
T 1zi0_A          239 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV  271 (307)
T ss_dssp             SSCCCTTTCSEEEEEEECTTCEEEEEESSCCEE
T ss_pred             eeEecCCCCeEEEEEEeCCCceEEEEcCCCcEE
Confidence              2222335555554444445455566666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	792
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-35
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-32
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-21
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-27
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-24
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-17
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-20
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-20
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-17
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-19
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-18
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-17
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-16
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-16
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-16
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-16
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-14
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-14
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-13
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-13
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-12
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-12
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-10
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-07
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.004
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  136 bits (341), Expect = 1e-35
 Identities = 59/340 (17%), Positives = 122/340 (35%), Gaps = 11/340 (3%)

Query: 457 ELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVI 516
           +LR + ++L     + D  ++     D            V +    +   ++R   +K+ 
Sbjct: 6   QLRQEAEQLKN--QIRDARKA---CADATLSQITNNIDPVGR-IQMRTRRTLRGHLAKIY 59

Query: 517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 576
             H+ +D +LL +   D K ++W + T      +   SS +    ++PS   +A    D 
Sbjct: 60  AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119

Query: 577 TVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 633
              +++      +    R   GH+  +    F  +   +  S D    +        + T
Sbjct: 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 179

Query: 634 RVFKGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE 692
                G           R   +   +    + D     CR +  GH   I+++C+ P+G 
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239

Query: 693 LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 752
             A+ S+D+          +    +          S  F  +   LL      +  +W+ 
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299

Query: 753 -SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
              ++   L  H+  ++ L V+ +   VA+ S D F+K+W
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.2 bits (183), Expect = 4e-15
 Identities = 15/70 (21%), Positives = 29/70 (41%)

Query: 513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 572
             +    FS  G+LL  G  D    +W          L  H + ++ +  +     +AT 
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330

Query: 573 SFDKTVRVWD 582
           S+D  +++W+
Sbjct: 331 SWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.8 bits (182), Expect = 6e-15
 Identities = 36/221 (16%), Positives = 68/221 (30%), Gaps = 43/221 (19%)

Query: 532 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 591
            D    LW  +T +  T    H+  +  +  +P      + + D + ++WD    G   +
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQ 220

Query: 592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR 651
           TF GH + + ++ F PN  +   +   D   R + +                        
Sbjct: 221 TFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQEL------------------ 261

Query: 652 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 710
                                 S       I SV +  SG LL +  +D +  VW     
Sbjct: 262 -------------------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302

Query: 711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 751
              +    L+ + N+           ++        L++WN
Sbjct: 303 ---DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 540
               A  +    ++V C   + DG  +ATG  D    +W+
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  126 bits (317), Expect = 1e-32
 Identities = 74/315 (23%), Positives = 125/315 (39%), Gaps = 30/315 (9%)

Query: 503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 562
            E  ++    S V    F     ++ +   D    +W  +T   +  L+ H+  + D+ F
Sbjct: 8   PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67

Query: 563 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 622
             S   LA+ S D T+++WD        RT  GH  +V S+   PN  D I S   D  I
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGFECI-RTMHGHDHNVSSVSIMPN-GDHIVSASRDKTI 125

Query: 623 RYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 679
           + W +  G C + F G       +R         + + +  V +    T+ C+  L+ H 
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185

Query: 680 KPIDSVCW--------------------DPSGELLASVSED-SVRVWTVGSGSEGECVHE 718
             ++ + W                       G  L S S D ++++W     S G C+  
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW---DVSTGMCLMT 242

Query: 719 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG 777
           L  + N     +FH     +L     ++L +W+    + M TL AHE  + +L       
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 302

Query: 778 YVASASHDKFVKLWK 792
           YV + S D+ VK+W+
Sbjct: 303 YVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.6 bits (236), Expect = 5e-22
 Identities = 43/226 (19%), Positives = 72/226 (31%), Gaps = 62/226 (27%)

Query: 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 560
           +     +       V     + DG L+A+  +D+   +W   T + K  L EH  ++  +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 561 RF--------------------SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV 600
            +                        P L + S DKT+++WD    G  L T +GH   V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV 250

Query: 601 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 660
             + FH      I SC  D  +R W   N  C +                          
Sbjct: 251 RGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLN----------------------- 286

Query: 661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 705
                            H   + S+ +  +   + + S D +V+VW
Sbjct: 287 ----------------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.4 bits (233), Expect = 1e-21
 Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 3/164 (1%)

Query: 463 DRLVEDGSLDDNVESFLSHDDTDPRD-AGGRGMDVSQGFSFKEANSVRASTSKVICCHFS 521
             L+   S D  V  ++        +    R +     ++ + + S  +  +        
Sbjct: 155 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214

Query: 522 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581
             G  L +G  DK   +W   T      L  H + +  V F      + + + DKT+RVW
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274

Query: 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 625
           D  N    ++T   H   V SLDFH      + +   D  ++ W
Sbjct: 275 DYKN-KRCMKTLNAHEHFVTSLDFHKT-APYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.3 bits (186), Expect = 1e-15
 Identities = 20/82 (24%), Positives = 35/82 (42%)

Query: 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 560
           +     ++    + V    F S GK + +   DK   +W     +    L  H   +T +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295

Query: 561 RFSPSMPRLATSSFDKTVRVWD 582
            F  + P + T S D+TV+VW+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 6e-04
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 748 ELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           + W     +   L+ H   +  +        + SAS D  +K+W
Sbjct: 1   KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (279), Expect = 4e-27
 Identities = 72/324 (22%), Positives = 115/324 (35%), Gaps = 44/324 (13%)

Query: 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE------------------H 553
           TS V C  FS+DG+ LATG  +K   ++          L +                   
Sbjct: 62  TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLI 613
              I  V FSP    LAT + D+ +R+WD +N    +              F      + 
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180

Query: 614 CSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACR 672
            S D    I        S T   + G   +   P  G+Y+AA   +  V + D+ET    
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240

Query: 673 LSLQ-------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE---------GEC 715
             L        GH   + SV +   G+ + S S D SV++W + + +          G C
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300

Query: 716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMTLTAHEGLIAALAVST 774
                 + +   S         +L     + +  W+  S N  + L  H   + ++AV+ 
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360

Query: 775 ------ETGYVASASHDKFVKLWK 792
                 E    A+ S D   ++WK
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.8 bits (200), Expect = 4e-17
 Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 53/210 (25%)

Query: 517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSMPRL 569
                 DGK +A G  D+   +W ++T      L+        H   +  V F+     +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269

Query: 570 ATSSFDKTVRVWDADNPG-----------YSLRTFMGHSASVMSLDFHPNKDDLICSCDG 618
            + S D++V++W+  N                 T++GH   V+S+    N D+ I S   
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSK 328

Query: 619 DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH 678
           D  + +W   +G+   + +G         H    ++ A  N                   
Sbjct: 329 DRGVLFWDKKSGNPLLMLQG---------HRNSVISVAVAN------------------- 360

Query: 679 TKPIDSVCWDPSGELLASVSED-SVRVWTV 707
                     P   + A+ S D   R+W  
Sbjct: 361 -----GSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.6 bits (197), Expect = 1e-16
 Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 18/141 (12%)

Query: 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE----------- 552
           E  S       V    F+ DG+ + +G  D+   LW+     +K++ +            
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305

Query: 553 -HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--- 608
            H   +  V  + +   + + S D+ V  WD  + G  L    GH  SV+S+        
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS-GNPLLMLQGHRNSVISVAVANGSSL 364

Query: 609 --KDDLICSCDGDGEIRYWSI 627
             + ++  +  GD + R W  
Sbjct: 365 GPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.8 bits (143), Expect = 4e-10
 Identities = 36/232 (15%), Positives = 79/232 (34%), Gaps = 27/232 (11%)

Query: 563 SPSMPRLATSSFDKTVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGD 619
           S S+P       +    +++   P      L   + H++ V  + F  + + L   C+  
Sbjct: 25  SQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKT 84

Query: 620 GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 679
              + + +++GS        +A  +   +L                        S     
Sbjct: 85  --TQVYRVSDGSLVARLSDDSAANKDPENL---------------------NTSSSPSSD 121

Query: 680 KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 739
             I SVC+ P G+ LA+ +ED + +      +    +       + +    F      + 
Sbjct: 122 LYIRSVCFSPDGKFLATGAEDRL-IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180

Query: 740 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
             G          +   ++TL+  +G+        +  Y+A+ S D+ V++W
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 232

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 9e-24
 Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 18/295 (6%)

Query: 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 560
             K    ++     VI C     G  + +G  D    +W   T K    L  H+  +   
Sbjct: 5   ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 63

Query: 561 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 620
           +   ++          +           +            ++      +  + S   D 
Sbjct: 64  QMRDNII------ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117

Query: 621 EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQGHT 679
            +R W I  G C  V  G  A +R   + GR + + A   +V + D ET+ C  +LQGHT
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177

Query: 680 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 738
             + S+ +D  G  + S S D S+RVW V     G C+H L+ + +             L
Sbjct: 178 NRVYSLQFD--GIHVVSGSLDTSIRVWDV---ETGNCIHTLTGHQSLTSGMELKDNI--L 230

Query: 739 LVIGCYQSLELWNMSENKTMTLTAHEGL--IAALAVSTETGYVASASHDKFVKLW 791
           +      ++++W++   + +           A   +     +V ++S D  VKLW
Sbjct: 231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (203), Expect = 1e-17
 Identities = 35/203 (17%), Positives = 76/203 (37%), Gaps = 20/203 (9%)

Query: 517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 576
                 DG+ + +G +D    +W  +T      L+ H++ +  ++F      + + S D 
Sbjct: 140 VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDT 197

Query: 577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 636
           ++RVWD +     + T  GH +    ++   N   ++ S + D  ++ W I  G C +  
Sbjct: 198 SIRVWDVETG-NCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTL 253

Query: 637 KGGTA----QMRFQPHLGRYLAAAAENVVSILDAETQAC-----RLSLQGHTKPIDSVCW 687
           +G           Q +    + ++ +  V + D +T         L   G    +  +  
Sbjct: 254 QGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313

Query: 688 DPSGELLASVSED-----SVRVW 705
             +  + A  S +      + V 
Sbjct: 314 SNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 2e-09
 Identities = 45/254 (17%), Positives = 81/254 (31%), Gaps = 53/254 (20%)

Query: 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 640
           W       S +   GH   V++        + I S   D  ++ WS   G C R   G T
Sbjct: 1   WRR-GELKSPKVLKGHDDHVITC-LQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57

Query: 641 AQ-----------------------------------------MRFQPHLGRYLAAAAEN 659
                                                           H  R ++ + + 
Sbjct: 58  GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117

Query: 660 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL 719
            + + D ET  C   L GH   +          +++   +  V+VW         C+H L
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAV-RCVQYDGRRVVSGAYDFMVKVWDP---ETETCLHTL 173

Query: 720 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLTAHEGLIAALAVSTETGY 778
             + N+ +S  F   +  ++      S+ +W++       TLT H+ L + + +      
Sbjct: 174 QGHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNI 229

Query: 779 VASASHDKFVKLWK 792
           + S + D  VK+W 
Sbjct: 230 LVSGNADSTVKIWD 243

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 7e-09
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 10/124 (8%)

Query: 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATS 572
           + +         +L +G  D    +W   T +    L+  +   + V           TS
Sbjct: 217 QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276

Query: 573 SFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLIC-SCDG--DGEIRY 624
           S D TV++WD    G  +R  +     G    V  +     K      S +G  + ++  
Sbjct: 277 SDDGTVKLWDLKT-GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV 335

Query: 625 WSIN 628
              +
Sbjct: 336 LDFD 339

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.7 bits (223), Expect = 1e-20
 Identities = 49/301 (16%), Positives = 101/301 (33%), Gaps = 33/301 (10%)

Query: 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 566
             R+ TSK + C    D + + +G  D    +W  +TL+ K  L  H+  +  +++   +
Sbjct: 9   HCRSETSKGVYC-LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67

Query: 567 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 626
                     +           +            ++      + ++ +C  D  I  W 
Sbjct: 68  I------ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121

Query: 627 INNGSCTRVFKGG----TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI 682
           + + +   + +       A           ++A+ +  + + +  T     +L GH + I
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181

Query: 683 DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 741
              C      L+ S S D ++R+W +      EC   L                   +V 
Sbjct: 182 A--CLQYRDRLVVSGSSDNTIRLWDI------ECGACLRVLEGHEELVRCIRFDNKRIVS 233

Query: 742 GCYQ-SLELWNMSENKTM----------TLTAHEGLIAALAVSTETGYVASASHDKFVKL 790
           G Y   +++W++                TL  H G +  L        + S+SHD  + +
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILI 291

Query: 791 W 791
           W
Sbjct: 292 W 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 8e-11
 Identities = 39/204 (19%), Positives = 71/204 (34%), Gaps = 8/204 (3%)

Query: 590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 649
           +      S  V  L +       I S   D  I+ W  N   C R+  G T  +    + 
Sbjct: 8   IHCRSETSKGVYCLQYDDQ---KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64

Query: 650 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 709
            R +   + +    +        L+   H           +G ++    + S+ VW + S
Sbjct: 65  ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 710 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLTAHEGLIA 768
            ++      L  +    +   F   Y  ++     +++++WN S  +   TL  H+  IA
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 182

Query: 769 ALAVSTETGYVASASHDKFVKLWK 792
            L        V S S D  ++LW 
Sbjct: 183 CLQYRDR--LVVSGSSDNTIRLWD 204

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 11/76 (14%)

Query: 516 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN---------LEEHSSLITDVRFSPSM 566
           +      D K + +G +D K  +W                   L EHS  +  ++F    
Sbjct: 220 LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF- 278

Query: 567 PRLATSSFDKTVRVWD 582
            ++ +SS D T+ +WD
Sbjct: 279 -QIVSSSHDDTILIWD 293

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.9 bits (221), Expect = 6e-20
 Identities = 45/288 (15%), Positives = 86/288 (29%), Gaps = 11/288 (3%)

Query: 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-----NLEEHSSLITDVRFSPSM 566
              V     S+  + + TGG      +W      +K+     +     + I   +  P  
Sbjct: 51  GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 567 PRLATSSFDKTVRVWDADNPGYSLRTFMGHS--ASVMSLDFHPNKDDLICSCDGDGEIRY 624
             L       T+ +WD   P   ++  +  S  A         +K    C  DG+  +  
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169

Query: 625 WSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDS 684
                           A      + G  L     +         +  +L     T  I S
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229

Query: 685 VCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 744
           + + P+GE LA   E S               ++L  + +   S  F       +  G  
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLH---VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286

Query: 745 QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792
             L  W      ++  +     + +  +S +  Y+ + S DK   +++
Sbjct: 287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (196), Expect = 9e-17
 Identities = 43/283 (15%), Positives = 87/283 (30%), Gaps = 14/283 (4%)

Query: 519 HFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 577
           H ++DG++       D           +    L  H  ++  V  S     + T      
Sbjct: 16  HVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGG-KGC 73

Query: 578 VRVWDADNPGY----SLRTFMGHSASVMSLDFHPNKDDLICS----CDGDGEIRYWSINN 629
           V+VWD  +PG     S    +     + S    P+   LI           ++   +   
Sbjct: 74  VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133

Query: 630 GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 689
            +           +   P      +  ++  +++ D   Q      QGHT     +    
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193

Query: 690 SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 749
            G  L +   D+                +     ++  S  + PT   L V     ++E+
Sbjct: 194 DGTKLWTGGLDN---TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250

Query: 750 WNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792
            ++++     L  HE  + +L  +    +  S   D  +  W+
Sbjct: 251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 8e-13
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 4/115 (3%)

Query: 513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 572
           S++    +   G+ LA G       + H +          H S +  ++F+       ++
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFVST 283

Query: 573 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 627
             D  +  W     G S+      S+SV+S D   + D  I +  GD +   + +
Sbjct: 284 GKDNLLNAWRTPY-GASIFQS-KESSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.2 bits (214), Expect = 6e-19
 Identities = 38/279 (13%), Positives = 78/279 (27%), Gaps = 21/279 (7%)

Query: 515 VICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATS 572
           + C  ++ D   +A   ++ +  ++            L+EH+  +T V ++P   R+ T 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 573 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 632
             D+   VW      +     +               +       G   I        + 
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 633 TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE 692
             V K     +R                 ++L  +     + L   +       +    +
Sbjct: 130 WWVCKHIKKPIRS----------------TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 173

Query: 693 LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 752
               V E             GE + E S +    H   F      +  +    ++ L + 
Sbjct: 174 ---EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230

Query: 753 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
            +   +   A E L            + +A HD F  L+
Sbjct: 231 DKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLF 269

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.4 bits (186), Expect = 2e-15
 Identities = 39/323 (12%), Positives = 98/323 (30%), Gaps = 32/323 (9%)

Query: 498 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLW--HTDTLKSKTNLEEHSS 555
            G  + + + ++    +V    ++ D   + T G D+ A +W     T K    +   + 
Sbjct: 37  SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR 96

Query: 556 LITDVRFSPSMPRLATSSFDKTVRVWD--ADNPGYSLRTFMGHSASVMSLDFHPNKDDLI 613
               VR++P+  + A  S  + + +     +N  +  +       S +          L+
Sbjct: 97  AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 156

Query: 614 CSCDGDGEIRYWSINNGSCTRV---------------------FKGGTAQMRFQPHLGRY 652
            +   D + R +S                                G    + F  +  R 
Sbjct: 157 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 216

Query: 653 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE 712
              + ++ V + DA+ +    +L   T P+ +V +     L+A+  +    ++T  S + 
Sbjct: 217 AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA- 275

Query: 713 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAV 772
                      +                    +       +       + H+  ++ ++V
Sbjct: 276 --GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISV 333

Query: 773 STETGY----VASASHDKFVKLW 791
            +          +   D  + +W
Sbjct: 334 LSGGKAKCSQFCTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.5 bits (155), Expect = 1e-11
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 6/118 (5%)

Query: 517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 576
              F ++  L+A G HD   VL+  D+   K +      +           R    + DK
Sbjct: 248 AVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 306

Query: 577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGS 631
                 +   G  L +   H  SV  +        K    C+   DG +  W + +  
Sbjct: 307 KASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.8 bits (122), Expect = 2e-07
 Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 676 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 734
               +PI    W+     +A    +  V ++   SG++   VHEL  +  +     + P 
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 735 YPSLLVIGCYQSLELWNM 752
              ++  G  ++  +W +
Sbjct: 63  SNRIVTCGTDRNAYVWTL 80

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.5 bits (103), Expect = 4e-05
 Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 5/78 (6%)

Query: 520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP----SMPRLATSSFD 575
                        DKKA                H + ++ +           +  T+  D
Sbjct: 292 QRGLTARERFQNLDKKASSE-GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 350

Query: 576 KTVRVWDADNPGYSLRTF 593
             + +WD  +   +L+  
Sbjct: 351 GGMSIWDVRSLESALKDL 368

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 83.5 bits (204), Expect = 5e-18
 Identities = 50/285 (17%), Positives = 92/285 (32%), Gaps = 6/285 (2%)

Query: 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSMPRLA 570
              +     S+DGK L +   +     W   T  S +   + H+++IT ++   S   L 
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT-TSKGDLF 70

Query: 571 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 630
           T S+D  ++V  A   G      + +  S   L    + D  I        I  +S    
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130

Query: 631 SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 690
           +   +    +            +      V     +      +    H   I SV +  +
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190

Query: 691 GELLASVS-EDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 749
           G  L +      V  ++V +  E    +  + +  K     + P    L       S+ +
Sbjct: 191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 250

Query: 750 WNM---SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
           WNM   S++  +   AH        +      + SA  D  +K W
Sbjct: 251 WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 65.8 bits (158), Expect = 3e-12
 Identities = 29/247 (11%), Positives = 63/247 (25%), Gaps = 8/247 (3%)

Query: 550 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPN 608
              H+  IT +  S     L ++  +  +  WD    G S R F   H+  +  +     
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSK 66

Query: 609 KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET 668
            D  + +   D  ++                         L                   
Sbjct: 67  GD--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124

Query: 669 QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHS 728
            +     +       S     + +   +V     +V             +   +  +  S
Sbjct: 125 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 184

Query: 729 CVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVST----ETGYVASASH 784
             F      L+     + +  ++++ N  +  T       A         +   +A+ S 
Sbjct: 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244

Query: 785 DKFVKLW 791
           D  V +W
Sbjct: 245 DNSVIVW 251

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.0 bits (130), Expect = 1e-08
 Identities = 20/163 (12%), Positives = 39/163 (23%), Gaps = 39/163 (23%)

Query: 590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 649
            +   GH+ ++ +L    +    + S D +G I  W I+ G   RVF             
Sbjct: 5   DQVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPD----------- 52

Query: 650 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 709
                                       H   I  +     G+L     +D ++V   G 
Sbjct: 53  ---------------------------VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG 85

Query: 710 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 752
                     +   ++             +           + 
Sbjct: 86  SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.9 bits (109), Expect = 5e-06
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSF 574
           C  +S D   LATG  D   ++W+ +            H+    +     +   + ++  
Sbjct: 229 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288

Query: 575 DKTVRVWD 582
           D  ++ W+
Sbjct: 289 DSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 13/107 (12%), Positives = 33/107 (30%), Gaps = 5/107 (4%)

Query: 605 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 664
                 D             + + + +         A + + P   R    + +N V + 
Sbjct: 192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 251

Query: 665 DAETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTV 707
           +    +    +         ++SV W  +   + S  +D +++ W V
Sbjct: 252 NMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV 297

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.7 bits (197), Expect = 6e-17
 Identities = 35/307 (11%), Positives = 70/307 (22%), Gaps = 29/307 (9%)

Query: 515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLAT 571
           +          LL     D    ++  D      +L     +   +    F  +      
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73

Query: 572 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 631
               +   +        S +    + A++         DD + +   DG I      N  
Sbjct: 74  VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133

Query: 632 CTRVFKGGT---------AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT--- 679
              +                     +  R +     + V                 +   
Sbjct: 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193

Query: 680 -KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------------GECVHELSCNGNK 725
            +  D        E  A  S D  V V       +                 + +     
Sbjct: 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253

Query: 726 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 785
            +S  F P +  L   G    +  WN+   K +   A     + + ++     +  A+ D
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD 313

Query: 786 KFVKLWK 792
              K   
Sbjct: 314 DTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.1 bits (193), Expect = 2e-16
 Identities = 33/272 (12%), Positives = 67/272 (24%), Gaps = 30/272 (11%)

Query: 550 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHP 607
            +     I+D++  PS   L  +S+D ++ V+  D       L   + +   ++  +F  
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 608 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVV------ 661
           N D  I      GEI    +      +      A +                        
Sbjct: 67  NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126

Query: 662 ----SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGECV 716
               +  D       L+             D +   L     +S V+ + +    +    
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186

Query: 717 HELSCNGNKFHSCVFHPTYPSLLVIGCY-----------------QSLELWNMSENKTMT 759
            E S    +       P                             S           + 
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246

Query: 760 LTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
            T     + ++  S    ++ +A  D  +  W
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 2e-08
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 576
              FS   K L T G D     W+  T K   N  + +   + V+ + S   L  ++ D 
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCLATSDD 314

Query: 577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 608
           T +   A +     +T   +++S+  +  + N
Sbjct: 315 TFKTNAAID-----QTIELNASSIYIIFDYEN 341

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 11/169 (6%), Positives = 33/169 (19%), Gaps = 37/169 (21%)

Query: 590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 649
           ++        +  +   P+   L+     DG +  +  +  +                  
Sbjct: 4   VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQ----------- 51

Query: 650 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 709
                                       +  P+    +  + +L   V      +  V  
Sbjct: 52  -------------------------SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86

Query: 710 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758
                     +   N     +       L+       +E+ +       
Sbjct: 87  IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG 135

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.3 bits (196), Expect = 1e-16
 Identities = 45/310 (14%), Positives = 93/310 (30%), Gaps = 33/310 (10%)

Query: 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 566
           ++R   + VI C    +   + TG  DK   ++ +   K    L  H   +  ++++   
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 567 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 626
             L + S D+TVRVWD      +      +S               I +   D  +  W 
Sbjct: 66  -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 627 INNGSCTRVFKGGTAQ------------------------MRFQPHLGRYLAAAAENVVS 662
           +   S                                        H    ++ + +N + 
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 184

Query: 663 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 721
           + D     C   L GHT  I S  +D   +   S S D ++R+W + +G     +   + 
Sbjct: 185 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 244

Query: 722 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 781
                             V            + + +   + H   ++A+     +  +  
Sbjct: 245 LVGLLRLSDKFL------VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 298

Query: 782 ASHDKFVKLW 791
           +  +    ++
Sbjct: 299 SGSENQFNIY 308

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 6e-09
 Identities = 6/72 (8%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 557 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSC 616
           ++ +        +  S  +    +++  +        +  +  + S++F      L+ + 
Sbjct: 284 LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT--LVAAV 341

Query: 617 DGDGEIRYWSIN 628
           + DG+     ++
Sbjct: 342 EKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 18/126 (14%), Positives = 44/126 (34%), Gaps = 11/126 (8%)

Query: 672 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 730
           R +L+GH   + + C       + + ++D  +RV+   +    + + +LS +     +  
Sbjct: 5   RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSIN---KKFLLQLSGHDGGVWALK 60

Query: 731 FHPTYPSLLVIG----CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 786
           +      +LV G      +  ++                    +       Y+ + S D 
Sbjct: 61  YAHG--GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118

Query: 787 FVKLWK 792
            + +WK
Sbjct: 119 TLHVWK 124

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 42/250 (16%), Positives = 77/250 (30%), Gaps = 10/250 (4%)

Query: 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 567
           V  S    +          +   G +    L      ++   +      +  VR      
Sbjct: 112 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171

Query: 568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 627
            +  S       +         L    GH+  + S  +   +   I +   D  IR W +
Sbjct: 172 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM-DTTIRIWDL 230

Query: 628 NNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 687
            NG      +G TA +       ++L +AA +            R     HT       +
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290

Query: 688 DPSGELLASVSEDSVRVWTVGSGSEGECVH-ELSCNGNKFHSCVFHPTYPSLLVIGCYQS 746
             S  +L S SE+   ++ + S   G+ VH  +  + ++  S  F      L+       
Sbjct: 291 YVSDNILVSGSENQFNIYNLRS---GKLVHANILKDADQIWSVNFKGKT--LVAAVEKDG 345

Query: 747 ---LELWNMS 753
              LE+ + S
Sbjct: 346 QSFLEILDFS 355

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 79.2 bits (193), Expect = 1e-16
 Identities = 48/291 (16%), Positives = 95/291 (32%), Gaps = 14/291 (4%)

Query: 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS 573
             +    +  G  +    +          +L       EHS   T  + SPS    A+  
Sbjct: 19  TAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77

Query: 574 FDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 632
               VR+WD     + L+T +   S  V  + +      +    +G     +  + +   
Sbjct: 78  VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137

Query: 633 TRVFKGGTA-----QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 687
           +     G A              R ++ + +N V+I +      + +   HTK + SV +
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197

Query: 688 DPSGELLASVSEDSVRVWTVGSGSEGECVH-----ELSCNGNKFHSCVFHPTYPSLLVIG 742
           +P G L AS   D   V   G       V      +   +        + P    +    
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257

Query: 743 CYQSLELWNMSENKTM-TLTAHEGL-IAALAVSTETGYVASASHDKFVKLW 791
             +++++WN++  K   T+     +    L +      + S S + F+   
Sbjct: 258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.4 bits (134), Expect = 4e-09
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSSFD 575
              +S DG  +A+   DK   +W+  TLK +  +   + +    +    +   L + S +
Sbjct: 243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 302

Query: 576 KTVRVWDAD 584
             +   + +
Sbjct: 303 GFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.7 bits (119), Expect = 3e-07
 Identities = 32/256 (12%), Positives = 69/256 (26%), Gaps = 18/256 (7%)

Query: 512 TSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 569
           + +      S  G   A+G      +       T   KT +   S  + D+ +     R+
Sbjct: 58  SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 117

Query: 570 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 629
           A     +            +    +   A  M+                D          
Sbjct: 118 AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP 177

Query: 630 G----SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-------QACRLSLQGH 678
                S           +R+ P    + +   +  + + +          +   L    H
Sbjct: 178 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 237

Query: 679 TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYP 736
           +  +  + W P G  +AS S D ++++W V +    +    +      +        T  
Sbjct: 238 SGSVFGLTWSPDGTKIASASADKTIKIWNVAT---LKVEKTIPVGTRIEDQQLGIIWTKQ 294

Query: 737 SLLVIGCYQSLELWNM 752
           +L+ I     +   N 
Sbjct: 295 ALVSISANGFINFVNP 310

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.3 bits (188), Expect = 7e-16
 Identities = 34/307 (11%), Positives = 81/307 (26%), Gaps = 27/307 (8%)

Query: 513 SKVICCHFSSDGKLLATGGHDKKAV----LWHTDTLKSKTNLEEHSSLITDVRFSPSMP- 567
           +      +      +A        V       +            SS++T V+FSP    
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 568 -RLATSSFDKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDG 618
             L +      V VW                  F   +  +  + +    +   +     
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137

Query: 619 DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-------ENVVSILDAETQAC 671
           D    + S ++G+      G + ++            +                 +  A 
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197

Query: 672 RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV--WTVGSGSEGECVHELSCNGNKFHSC 729
             +       +  V + P             ++  +   SG   + + +           
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257

Query: 730 VFHPTYPSLLVIGCYQSLELWNMSENK---TMTLTAHEGLIAALAVS-TETGYVASASHD 785
           +          +G   ++ +W+++ +K     TL   +     + V  T  G + S S D
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317

Query: 786 KFVKLWK 792
             +  ++
Sbjct: 318 GTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 1e-08
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--MSLDFHPNKDDLICSCDGDGEIRYW 625
           + AT   D T+RVWD       ++ +      +    +      +  I S   DG + ++
Sbjct: 265 KFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

Query: 626 SI 627
            +
Sbjct: 324 EL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.6 bits (124), Expect = 7e-08
 Identities = 30/266 (11%), Positives = 65/266 (24%), Gaps = 28/266 (10%)

Query: 512 TSKVICCHFS--SDGKLLATGGHDKKAVLWHTDT--------LKSKTNLEEHSSLITDVR 561
           +S V    FS     + L +G    K ++W            +  K+  +  +  I+D+ 
Sbjct: 63  SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122

Query: 562 FSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 619
           +     RL       D        D+                           +   D  
Sbjct: 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182

Query: 620 GEIRYWSINNGSC---------TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 670
             + Y                     +           +    +    +       E   
Sbjct: 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242

Query: 671 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF--H 727
                Q   +           +  A+V  D ++RVW V +    +CV + + +  +    
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT---SKCVQKWTLDKQQLGNQ 299

Query: 728 SCVFHPTYPSLLVIGCY-QSLELWNM 752
                 T    ++      +L  + +
Sbjct: 300 QVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 16/179 (8%)

Query: 596 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKGGTAQ----MRFQPHL 649
                  L + P  + +   C     +R     +        F G  +     ++F P  
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 650 -GRYLAAAAEN-VVSILDAETQACRLSL--------QGHTKPIDSVCWDPSGELLASVSE 699
             +YL +  E+  V +          S+        Q    PI  + WD  G  L  V E
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135

Query: 700 DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758
                    S   G  + E+S +  + ++C    + P   +        ++        
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 194

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.3 bits (178), Expect = 2e-14
 Identities = 35/316 (11%), Positives = 81/316 (25%), Gaps = 71/316 (22%)

Query: 544 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-----------PGYSLRT 592
           + +    + H + I  V          + S D  ++VWD                +  ++
Sbjct: 4   IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 593 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM--------- 643
            + H   + +++    +  L+ +    G++ ++ I     T+        +         
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121

Query: 644 --------RFQPHLGRYLAAAAEN-------------------VVSILDAETQACRLSLQ 676
                        L   L A                       +      E Q    S  
Sbjct: 122 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 181

Query: 677 GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 736
             ++   SV     G L+A+   +     +  S        E   +     + +    + 
Sbjct: 182 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240

Query: 737 SLLVIGCYQS---------------------LELWNMSENKTMTLTAHEGLIAALAVSTE 775
               +                          L +   S   ++   AH   + +L+ +  
Sbjct: 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 300

Query: 776 TGYVASASHDKFVKLW 791
              + SA  D  ++ W
Sbjct: 301 GETLCSAGWDGKLRFW 316

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.6 bits (150), Expect = 6e-11
 Identities = 41/231 (17%), Positives = 71/231 (30%), Gaps = 44/231 (19%)

Query: 503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVL------WHTDTLKSKTNLEEHSSL 556
               S    +        S  G L+ATG ++    +            +S+ ++  +S+ 
Sbjct: 175 GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233

Query: 557 ITDVRFSPSMPRLATSSFDKTVRVW---------------DADNPGYSLRTFMGHSASVM 601
           I  V+FSP    LA +    +                      +   +      HS+ VM
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293

Query: 602 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL------GRYLAA 655
           SL F+ + + L  +   DG++R+W +               +  +  +      G  LA 
Sbjct: 294 SLSFNDSGETLCSAGW-DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE 352

Query: 656 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 705
                V  L               K   S       E L  V  D S+R +
Sbjct: 353 PGVFDVKFLK--------------KGWRSGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.1 bits (141), Expect = 8e-10
 Identities = 27/200 (13%), Positives = 49/200 (24%), Gaps = 28/200 (14%)

Query: 539 WHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA 598
              +   +  +    S   T V  S     +AT   + TV++ +             HS 
Sbjct: 169 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 227

Query: 599 SVMSLD----FHPNKDDLICSCDGDGEIRYWSINNGSCTR-------------------V 635
              S          +  L+            ++                           
Sbjct: 228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 287

Query: 636 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI----DSVCWDPSG 691
                  + F        +A  +  +   D +T+    +L  H   I    D +  D  G
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 347

Query: 692 ELLASVSEDSVRVWTVGSGS 711
           + LA      V+    G  S
Sbjct: 348 DSLAEPGVFDVKFLKKGWRS 367

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 22/174 (12%), Positives = 49/174 (28%), Gaps = 16/174 (9%)

Query: 463 DRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 522
             L+  G  +  V+           +        S   +     SV+ S    +      
Sbjct: 195 RGLIATGFNNGTVQISELSTLRPLYN---FESQHSMINNSNSIRSVKFSPQGSLLAIAHD 251

Query: 523 DGKLLATGGHDKKAVLW------HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 576
                    ++ +           T + ++      HSS +  + F+ S   L ++ +D 
Sbjct: 252 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 311

Query: 577 TVRVWDADNPGYSLRTFMGHSASV----MSLDFHPNKDDLICSCDGDGEIRYWS 626
            +R WD       + T   H   +      L           +  G  ++++  
Sbjct: 312 KLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDE--HGDSLAEPGVFDVKFLK 362

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 27/149 (18%), Positives = 45/149 (30%), Gaps = 21/149 (14%)

Query: 481 HDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 540
               +       G       S + +    A +S V+   F+  G+ L + G D K   W 
Sbjct: 258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317

Query: 541 TDTLKSKTNLEEHSS----LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 596
             T +  T L  H          +        LA         V+D        R+ MG 
Sbjct: 318 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVKFLKKGWRSGMGA 371

Query: 597 SASVMSLDFHPNKDDLICSCDGDGEIRYW 625
                      + ++ +C    D  IR++
Sbjct: 372 -----------DLNESLCCVCLDRSIRWF 389

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 72.5 bits (176), Expect = 3e-14
 Identities = 20/316 (6%), Positives = 74/316 (23%), Gaps = 45/316 (14%)

Query: 520 FSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKT 577
             +  + +    +     +    +    K+ +            +P        ++    
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 578 VRVWDADNPGYSLRTFMG-----HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 632
           +   D D    +    +         S+ S    P+  ++  + +    +    +     
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 633 TRVFKGGTAQMRFQPHLGRY-------------LAAAAENVVSILDAETQACRLSLQGHT 679
             VF                                 A   +  +D +T    ++L    
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183

Query: 680 KP------------------------IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGEC 715
                                     + ++      +   + ++      +V   +    
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243

Query: 716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE 775
             E +     + + +  P  P+ +       L  +++ + K +     +     +A   +
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKK 302

Query: 776 TGYVASASHDKFVKLW 791
              +        + ++
Sbjct: 303 GDKLYLGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 46.7 bits (109), Expect = 6e-06
 Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 2/73 (2%)

Query: 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 571
           T        S        G  ++ A  +     K              V F     +L  
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308

Query: 572 SSFDKTVRVWDAD 584
                 + V++ D
Sbjct: 309 GGTFNDLAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 16/130 (12%), Positives = 34/130 (26%), Gaps = 5/130 (3%)

Query: 515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSS 573
                F  D +  AT       +     T K+ T      + L      SP  P      
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV 270

Query: 574 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 633
            +  +  +D       ++       +   + F     D +       ++  ++ +     
Sbjct: 271 LN-RLAKYDLKQ-RKLIKAA-NLDHTYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKV 326

Query: 634 RVFKGGTAQM 643
           +  K     M
Sbjct: 327 KNIKLPGGDM 336

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 69.5 bits (168), Expect = 3e-13
 Identities = 21/227 (9%), Positives = 46/227 (20%), Gaps = 21/227 (9%)

Query: 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 565
                S +     +          G   +   ++  +  K      E+S       F   
Sbjct: 131 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH-DYAPAFDAD 189

Query: 566 MPRLATSSFDKTVRVWDADN------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 619
              L   S+       D                      S       P            
Sbjct: 190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249

Query: 620 GEIRYWSI------NNGSCTRVFKGGTAQMRFQPH--LGRYLAAAAEN-VVSILDAETQA 670
            ++   S        +       +          H     Y   A E  V+   D +T+ 
Sbjct: 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR- 308

Query: 671 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 716
               +      +  +      + +    +D  +  + +    +   V
Sbjct: 309 ---KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 68.4 bits (165), Expect = 7e-13
 Identities = 26/305 (8%), Positives = 62/305 (20%), Gaps = 26/305 (8%)

Query: 510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 569
               ++       D K+    G  +   L   D    K    E +             + 
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99

Query: 570 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP---------NKDDLICSCDGDG 620
           A  + D+   +      G          A +                             
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159

Query: 621 EIRYWSINNGSCTRVFKGGT-AQMRFQPHLGRYLAAAAE-NVVSILDAETQACR------ 672
            I  + +            +           + L   +  ++    D             
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219

Query: 673 -LSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG-----SGSEGECVHELSCNGNKF 726
              +       +     P      +   D   ++           +   +  L  +   +
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279

Query: 727 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 786
              V                L  +++   KT  +T  +  +  L +S +   V     D 
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDV---KTRKVTEVKNNLTDLRLSADRKTVMVRKDDG 336

Query: 787 FVKLW 791
            +  +
Sbjct: 337 KIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 66.4 bits (160), Expect = 4e-12
 Identities = 26/298 (8%), Positives = 57/298 (19%), Gaps = 30/298 (10%)

Query: 520 FS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 578
           FS  DG L+A     +    +  D   +          I  VR              +  
Sbjct: 10  FSPLDGDLIAFVSRGQ---AFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGD 66

Query: 579 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 638
            +   D        F  +  +V ++    N    + + D    +                
Sbjct: 67  FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR 126

Query: 639 GTAQMRFQPHLGRYLAAAAENVVSILDAETQA-----------CRLSLQGHTKPIDSVCW 687
                 F         A    +                        +         +  +
Sbjct: 127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAF 186

Query: 688 DPSGELLASVSED-SVRVWTVGSGS----EGECVHELSCNGNKFHSCVFHPTYPSLLVIG 742
           D   + L  +S             +           +       +     P        G
Sbjct: 187 DADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR-SMTSEAG 245

Query: 743 CYQSLELWNM---------SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
            Y   +++                + L +   + +         Y   A     +  +
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 303

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 59.9 bits (143), Expect = 5e-10
 Identities = 16/166 (9%), Positives = 36/166 (21%), Gaps = 17/166 (10%)

Query: 478 FLSHDDTDP-RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKA 536
           +LS+   DP  D               +   +                     G +D   
Sbjct: 195 YLSYRSLDPSPDRVVLNFSFEVV---SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251

Query: 537 VLWHT-------DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 589
           +   +          +    LE    + +             +     +  +D       
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT---- 307

Query: 590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 635
            R       ++  L    +    +     DG+I  + +      R 
Sbjct: 308 -RKVTEVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEKPEDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 16/181 (8%), Positives = 41/181 (22%), Gaps = 15/181 (8%)

Query: 515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-------LEEHSSLITDVRFSPSMP 567
                F +D K L    +           L            +          +  P   
Sbjct: 181 DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 240

Query: 568 RLATSSFDKT---VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDGEI 622
                 +D      R    +      R  +   +S++      + +           G +
Sbjct: 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 300

Query: 623 RYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQGHTKP 681
             + +     T   K     +R      + +    +   +     E      +++   +P
Sbjct: 301 LKYDVKTRKVT-EVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP 358

Query: 682 I 682
           +
Sbjct: 359 L 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 22/250 (8%), Positives = 56/250 (22%), Gaps = 21/250 (8%)

Query: 560 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 619
             FSP    L          + D      +    +     +  +    +          +
Sbjct: 8   EDFSPLDGDLIAFVSRGQAFIQDVSG---TYVLKVPEPLRIRYVRRGGDTKVAFIHGTRE 64

Query: 620 GE-IRYWSINNGSCTRVFKGGT--AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 676
           G+ +  +    G   +  +       M    +    + A     +  +D ET    +  +
Sbjct: 65  GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124

Query: 677 GHTKPIDSVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNGNKFHSC 729
                I       +   +A             V         EG  +   +   +  ++ 
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184

Query: 730 VFHPTYPSLLVIGCYQSLELWN--------MSENKTMTLTAHEGLIAALAVSTETGYVAS 781
            F     +L  +         +           +K   +    G      +   +    +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244

Query: 782 ASHDKFVKLW 791
             +D      
Sbjct: 245 GEYDLNDMYK 254

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.8 bits (158), Expect = 3e-12
 Identities = 29/288 (10%), Positives = 69/288 (23%), Gaps = 56/288 (19%)

Query: 550 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 609
           +  H+  IT +  +P    L + S+D  +  W + +          HS  ++SLD    +
Sbjct: 9   ISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKAQ 58

Query: 610 ----------------------------------DDLICSCDGDGEIRYWSINNGSCTRV 635
                                                + + D D  I      +   +  
Sbjct: 59  EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 118

Query: 636 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 695
                + +    +           +     ++ +               +   PS   +A
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 178

Query: 696 SVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---------S 746
           +       +       E +                      +                 +
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238

Query: 747 LELWNMSENKT--MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792
           + ++++         L AH+  +  L   T    + S+  D  +K W 
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.2 bits (154), Expect = 1e-11
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 562 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 621
                  +AT S D  + ++    P   ++    H   V +L +       + S   D  
Sbjct: 223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADAC 280

Query: 622 IRYWSI 627
           I+ W++
Sbjct: 281 IKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (114), Expect = 1e-06
 Identities = 9/128 (7%), Positives = 33/128 (25%), Gaps = 1/128 (0%)

Query: 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 640
                    +      +               + S +       +  +  +         
Sbjct: 159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 218

Query: 641 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLS-LQGHTKPIDSVCWDPSGELLASVSE 699
                +         + +  + I   +     +  L  H   ++++ W+    L++S ++
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGAD 278

Query: 700 DSVRVWTV 707
             ++ W V
Sbjct: 279 ACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (102), Expect = 4e-05
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 632
           L+T  GH+  + +L  +P     + S   DG I  WS ++   
Sbjct: 6   LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ 43

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 7/82 (8%)

Query: 674 SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG--ECVHELSCNGNKFHSCV 730
           ++ GH K I ++  +P    L S S D  +  W+  S  +     +  L  +  + +S +
Sbjct: 8   TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSI 63

Query: 731 FHPTYPSLLVIGCYQSLELWNM 752
                  +  I  ++      +
Sbjct: 64  SWDDTLKVNGITKHEFGSQPKV 85

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 65.2 bits (157), Expect = 6e-12
 Identities = 28/305 (9%), Positives = 66/305 (21%), Gaps = 38/305 (12%)

Query: 525 KLLATGGHDKKAVLW--HTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVW 581
             +       K V+       +     + +          +P      AT +  +++   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 582 DADNP----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 637
           D           L T      S+      P+   L                  +   ++ 
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 638 GGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKP----- 681
             T   R      R +   A              + ++D E           +       
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 682 -IDSVCWDPSGELLASVSEDSVRVWTVG----SGSEGECVHELSCNGNKFHSCVFHPTYP 736
             D +      E    ++                +    +  +     +           
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 737 ----------SLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 786
                          G Y  LE +++ +N ++          ++ VST+   V       
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301

Query: 787 FVKLW 791
            +  +
Sbjct: 302 DLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 19/232 (8%), Positives = 49/232 (21%), Gaps = 28/232 (12%)

Query: 480 SHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLW 539
                                          +  ++    ++ DG  L   G D   +  
Sbjct: 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP 161

Query: 540 HTDTLKSK---------------------TNLEEHSSLITDVRFSPSMPRLATSSFDKTV 578
              TL                         +                +     +++   +
Sbjct: 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221

Query: 579 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 638
              D +    ++R          S   +P K     +      +  + +   +  +    
Sbjct: 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKRVPL 278

Query: 639 GTA--QMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPIDSVCW 687
             +   +      G  +    A   ++  DAET   +  +        S+  
Sbjct: 279 PHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLAS 329

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 61.7 bits (149), Expect = 1e-10
 Identities = 30/298 (10%), Positives = 69/298 (23%), Gaps = 29/298 (9%)

Query: 520 FSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 577
              D +     T     +  L    T + KT L+   + +   R S S   L     D  
Sbjct: 26  NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGK 84

Query: 578 VRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 633
           V + D           ++      +   S          I       +            
Sbjct: 85  VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144

Query: 634 RVFKGGTAQMRFQP-------------HLGRYLAAAAE--NVVSILDAETQACRLSLQGH 678
           ++          Q              H         +    + ++D        + +  
Sbjct: 145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS 204

Query: 679 T-KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 737
             + +     D S     + +    ++  + +  EG+ V      G   H       +  
Sbjct: 205 AERFLHDGGLDGSHRYFITAANARNKLVVIDT-KEGKLVAIEDTGGQTPHPG-RGANFVH 262

Query: 738 LLVIGCYQSLELWN----MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791
                 + +  + +    +          +   I     +   G +   +H     L+
Sbjct: 263 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.7 bits (135), Expect = 5e-09
 Identities = 28/290 (9%), Positives = 71/290 (24%), Gaps = 33/290 (11%)

Query: 520 FSSDGKLLAT----------GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 569
            + DG  +A           G       ++   TL    ++E   +    V   P M   
Sbjct: 54  VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWM--T 111

Query: 570 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH------PNKDDLICSCDGDGEIR 623
           + +   KT+  +            +   A    LD        P   D       DG + 
Sbjct: 112 SLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLA 171

Query: 624 YWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPID 683
             +        +          +  +     +     +       +              
Sbjct: 172 KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIH------------ 219

Query: 684 SVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 743
                 SG+     + +++       G       +++ +       +             
Sbjct: 220 -QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278

Query: 744 YQSLELWNMSENKTMTLTAHEGLIAALAVST--ETGYVASASHDKFVKLW 791
            + + + +    + +        I ++ VS   +    A ++ DK + + 
Sbjct: 279 SRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIH 328

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.1 bits (123), Expect = 1e-07
 Identities = 22/211 (10%), Positives = 43/211 (20%), Gaps = 7/211 (3%)

Query: 403 SAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADM 462
             P                              GT           +     +    +  
Sbjct: 146 DVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK 205

Query: 463 DRLVEDGSLDDNVESFLSHDDTD---PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCH 519
              +   +    +             P        + + G+       V    +      
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265

Query: 520 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL--ATSSFDKT 577
                         +  V+    T +     E     I  +  S     L  A S+ DKT
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKT 324

Query: 578 VRVWDADNPGYSLRTFMGHSASVMSLDFHPN 608
           + + DA++ G  LR+          +     
Sbjct: 325 LYIHDAES-GEELRSVNQLGHGPQVITTADM 354

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.9 bits (120), Expect = 3e-07
 Identities = 25/210 (11%), Positives = 48/210 (22%), Gaps = 28/210 (13%)

Query: 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 565
                 T+         DG L       +           ++    E   LI    +S  
Sbjct: 150 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI----THTEVFHPEDEFLINHPAYSQK 205

Query: 566 MPRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPN---------------- 608
             RL   ++   +   D  +     L      + +  +  + P                 
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265

Query: 609 ---KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA--QMRFQPHLGRYLAAAA--ENVV 661
              + D          +       G     F+ G     +         L A +  +  +
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTL 325

Query: 662 SILDAETQACRLSLQGHTKPIDSVCWDPSG 691
            I DAE+     S+         +     G
Sbjct: 326 YIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.7 bits (120), Expect = 3e-07
 Identities = 25/318 (7%), Positives = 70/318 (22%), Gaps = 48/318 (15%)

Query: 520 FSSDGK---LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---------- 566
             +  +   +            W +      T      + ++      S           
Sbjct: 27  PGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSF 86

Query: 567 PRLATSSFDKTVRVWDADN------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 620
            R A       V V+D                       V  +    +   L+    G  
Sbjct: 87  ARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS 146

Query: 621 EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS------ 674
                S+   S  ++ K  +           +   +    ++  D               
Sbjct: 147 AAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206

Query: 675 LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 734
                    +   +  G L+ +V+   +    + +         +  N +   +  F   
Sbjct: 207 TGAQNCSSQAAQANYPGMLVWAVASS-ILQGDIPAAG-ATMKAAIDGNESGRKADNFRSA 264

Query: 735 YPSLLVIGCYQSLELWNMSENKTMTLTA-------------------HEGLIAALAVST- 774
              ++         +    E+    L A                   +     A+  +  
Sbjct: 265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQD 324

Query: 775 -ETGYVASASHDKFVKLW 791
             +   A+++  + + ++
Sbjct: 325 GASDNYANSAGTEVLDIY 342

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 571 TSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 629
            S   + + VW+ ++ G  +L   +     V  +   P+K  L      +  +  + I  
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 630 GSCTRVF 636
                 F
Sbjct: 69  DDGALTF 75

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.9 bits (110), Expect = 6e-06
 Identities = 31/314 (9%), Positives = 67/314 (21%), Gaps = 44/314 (14%)

Query: 520 FSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 577
              D       T     +  L   D+ K    ++   + +   R S S   L     D  
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDAR 84

Query: 578 VRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 633
           + + D           ++  +   +   S          I       +            
Sbjct: 85  IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144

Query: 634 RVFKGGTAQ---MRFQPHLGRYLAAAAEN-------------VVSILDAETQACRLSLQG 677
           ++            + P        A+               V+ +   +     ++  G
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG 204

Query: 678 HTKPIDSVCWDPSGELLASV-------------SEDSVRVWTVGSGSEGECVHELSCNGN 724
               +    WD S     +                    +  VG                
Sbjct: 205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY 264

Query: 725 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVA---- 780
                  H    S+ +IG           + K   L    G    +    ++ ++     
Sbjct: 265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWK-KVAELQGQGGGSLFIKTHPKSSHLYVDTT 323

Query: 781 ---SASHDKFVKLW 791
               A   + V ++
Sbjct: 324 FNPDARISQSVAVF 337

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.0 bits (87), Expect = 0.004
 Identities = 21/153 (13%), Positives = 39/153 (25%), Gaps = 22/153 (14%)

Query: 505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 564
           AN V      V       DG +   G   K    +     K    L+        ++  P
Sbjct: 257 ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY---AWKKVAELQGQGGGSLFIKTHP 313

Query: 565 -------SMPRLATSSFDKTVRVWDADN--------PGYSLRTFMGHSASVMSLDFHPNK 609
                         +   ++V V+D  N        P          +  V+  +++   
Sbjct: 314 KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 373

Query: 610 DDLICSC----DGDGEIRYWSINNGSCTRVFKG 638
           D++  S     +    +            V K 
Sbjct: 374 DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 406

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 28/267 (10%), Positives = 70/267 (26%), Gaps = 6/267 (2%)

Query: 529 TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPG 587
                    +    + K    +   S+       SP   ++   ++    V + D     
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTAT-N 64

Query: 588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQP 647
             + T    S+          K   + +          + +N     V  G +       
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124

Query: 648 HLGRYL--AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVW 705
             G+ L      +  VS+++  T+A   ++     P          ++  +  +      
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184

Query: 706 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG 765
                +      ++    +               V   + ++ + +   NK         
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244

Query: 766 LIAALAVSTETGYV-ASASHDKFVKLW 791
             A +AV+ +   V  + S    V + 
Sbjct: 245 DPAGIAVTPDGKKVYVALSFCNTVSVI 271

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 14/109 (12%), Positives = 37/109 (33%), Gaps = 3/109 (2%)

Query: 652 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS--VRVWTVGS 709
           Y+A +  + +S++D  +     ++   + P+      P G  +   +  S  V +    +
Sbjct: 5   YIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTAT 63

Query: 710 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758
            +    V   S       S      Y + +       ++  + +   T+
Sbjct: 64  NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV 112

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 5/77 (6%), Positives = 16/77 (20%), Gaps = 7/77 (9%)

Query: 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 640
                                 +   P+   +  +      +        + T     G 
Sbjct: 228 MIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGK 286

Query: 641 AQMRFQPH-LGRYLAAA 656
                 P+  G+++ + 
Sbjct: 287 -----NPYASGQFIGSI 298

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	792
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.8
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.74
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.66
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.6
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.53
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.51
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.33
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.33
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.32
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.25
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.2
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.17
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.1
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.09
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.05
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.02
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.0
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.98
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.96
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.95
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.91
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.9
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.87
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.86
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.83
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.63
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.61
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.51
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.35
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.24
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.19
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.07
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.06
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.04
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.96
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.86
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.79
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.69
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.66
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.66
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.63
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.61
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.54
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.49
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.43
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.35
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.31
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.27
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.09
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.09
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.03
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.78
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	96.61
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.29
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.73
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.52
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.49
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.33
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.31
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.97
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	94.34
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.13
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	91.19
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	90.77
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	90.74

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.1e-39  Score=335.21  Aligned_cols=284  Identities=26%  Similarity=0.497  Sum_probs=262.9

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      +..+|+||.+.|+||+|+|++++||+|+.||+|+|||+++++.+.++.+|...|++++|++++.++++++.++.+.+|+.
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCe
Q 003842          584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENV  660 (792)
Q Consensus       584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~  660 (792)
                      .. ......+..|...+.++.|++++.. +++++.|+.+++||+++++.+..+..   .+.+++|++++..+++++.|+.
T Consensus        89 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  166 (317)
T d1vyhc1          89 QG-FECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  166 (317)
T ss_dssp             TS-SCEEECCCCCSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cc-cccccccccccccceeeeccCCCce-EEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCe
Confidence            87 5667778889999999999999775 55899999999999999998887754   4677899999999999999999


Q ss_pred             EEEEECCCCeEEEEecCCCCCeEEEEEcCC--------------------CCEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 003842          661 VSILDAETQACRLSLQGHTKPIDSVCWDPS--------------------GELLASVSED-SVRVWTVGSGSEGECVHEL  719 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spd--------------------g~~Las~s~d-~I~IwDl~s~~~~~~i~~~  719 (792)
                      |++|+..+++.+..+.+|...+.+++|+++                    +.++++++.| .|++||++++   .++..+
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~  243 (317)
T d1vyhc1         167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTL  243 (317)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEE
T ss_pred             EEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC---cEEEEE
Confidence            999999999999999999999999999875                    3478888888 9999999876   788889


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          720 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       720 ~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ..|...|.+++|+|++++|++++.||.|+|||+.+++++ .+.+|.+.|++++|++++++||+|+.||.|+|||
T Consensus       244 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         244 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999999999999999999999998876 7789999999999999999999999999999998

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-38  Score=341.54  Aligned_cols=283  Identities=19%  Similarity=0.278  Sum_probs=249.9

Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-----EEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDK  576 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~-----~~l~~h~~~V~~i~fspdg~~Lasgs~Dg  576 (792)
                      .+.+..+ .|...|+|++|+++|++||+|+ ||.|+|||+.+....     ....+|...|++|+|+|++++|++|+.||
T Consensus        42 ~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg  119 (337)
T d1gxra_          42 ARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS  119 (337)
T ss_dssp             EEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred             ceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccc
Confidence            3455555 8999999999999999999997 899999999765332     23357899999999999999999999999


Q ss_pred             cEEEEeCCCCC-ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEE
Q 003842          577 TVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRY  652 (792)
Q Consensus       577 ~V~IWdl~s~~-~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~l  652 (792)
                      .|+|||+.... .....+..|...|.+++|+|++. ++++++.|+.|++||+.++++.....   ..+.+++|++++..+
T Consensus       120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~  198 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL  198 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999997533 45567788999999999999875 56689999999999999998877654   457789999999999


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 003842          653 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF  731 (792)
Q Consensus       653 la~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~f  731 (792)
                      ++++.|+.|++||+++++.+..+. |...|.+++|+|++++|++++.| .|++||+++..   . .....|...|.+++|
T Consensus       199 ~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~---~-~~~~~~~~~i~~v~~  273 (337)
T d1gxra_         199 WTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---K-YQLHLHESCVLSLKF  273 (337)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---E-EEECCCSSCEEEEEE
T ss_pred             ccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccc---c-ccccccccccceEEE
Confidence            999999999999999999887765 78899999999999999999998 99999998752   2 345678889999999


Q ss_pred             eCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          732 HPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       732 spdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +|++++|++++.|+.|++||+.+++.+....|...|++++|+|++++||+|+.||.|+|||
T Consensus       274 s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            9999999999999999999999999998788999999999999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.8e-37  Score=327.91  Aligned_cols=288  Identities=21%  Similarity=0.420  Sum_probs=254.3

Q ss_pred             cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEE
Q 003842          500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR  579 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~  579 (792)
                      ..++..++|+||.+.|+||+|+|++++||+|+.||+|+|||+.+++.+..+..|...|++++|+|++.+|++|+.|+.|+
T Consensus        43 ~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~  122 (340)
T d1tbga_          43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             cceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceee
Confidence            44567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCC---ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEE
Q 003842          580 VWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYL  653 (792)
Q Consensus       580 IWdl~s~~---~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll  653 (792)
                      +|+.....   .....+.+|...+....+..+  ..++.+..|..+..|+...........   ..+....+.+....++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (340)
T d1tbga_         123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEESSSSCSCCCEEEEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccceecccccccccccccccc--cccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence            99987533   345567778877777666654  345578889999999998876655543   3556778888999999


Q ss_pred             EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE--eecCCCceEEEE
Q 003842          654 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE--LSCNGNKFHSCV  730 (792)
Q Consensus       654 a~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~--~~~~~~~i~si~  730 (792)
                      +++.|+.|++||+++++++..+.+|...|++++|+|++++|++++.| .|++||++..   ..+..  ...+...+.+++
T Consensus       201 ~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~~~i~~~~  277 (340)
T d1tbga_         201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVS  277 (340)
T ss_dssp             EEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEE
T ss_pred             EeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc---ccccccccccccCceEEEE
Confidence            99999999999999999999999999999999999999999999999 9999999865   34433  345566799999


Q ss_pred             EeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          731 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       731 fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |+|++++|++|+.||.|+|||+.+++.+ .+.+|.+.|++++|+|++.+||+|+.||.|+|||
T Consensus       278 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999999999999887 7789999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-37  Score=335.61  Aligned_cols=283  Identities=27%  Similarity=0.435  Sum_probs=242.4

Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec------------------cCCCCEEEEEECCCCCe
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE------------------EHSSLITDVRFSPSMPR  568 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~------------------~h~~~V~~i~fspdg~~  568 (792)
                      ...+|++.|+||+|+|||++||+|+ |++|+|||+.+++.+..+.                  .|...|++|+|+|++++
T Consensus        57 ~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          57 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence            3447999999999999999999986 8999999999988877664                  36677999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--CeeEEEEe
Q 003842          569 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQ  646 (792)
Q Consensus       569 Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~s  646 (792)
                      |++|+.||.|++||... +..+..+.+|...|.+++|++++. .+++++.++.|++||+++.........  ....+.+.
T Consensus       136 l~s~~~dg~v~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  213 (388)
T d1erja_         136 LATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS  213 (388)
T ss_dssp             EEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred             ceecccccccccccccc-cccccccccccccccccccccccc-cccccccceeeeeeecccccccccccccccccccccc
Confidence            99999999999999987 677888889999999999999876 455889999999999999887776543  33445555


Q ss_pred             c-CCCEEEEEEcCCeEEEEECCCCeEEEEe-------cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC-----
Q 003842          647 P-HLGRYLAAAAENVVSILDAETQACRLSL-------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-----  712 (792)
Q Consensus       647 p-~~~~lla~s~dg~I~i~D~~t~~~~~~l-------~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~-----  712 (792)
                      + ++..+++++.|+.|++||.+++..+..+       .+|...|++++|+|++++|++++.| .|++||+.+...     
T Consensus       214 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  293 (388)
T d1erja_         214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK  293 (388)
T ss_dssp             STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred             CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccc
Confidence            5 6677888899999999999998776654       3578899999999999999999998 999999976532     


Q ss_pred             ----cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEE------eCCCCEEEE
Q 003842          713 ----GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAV------STETGYVAS  781 (792)
Q Consensus       713 ----~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~f------spdg~~LaS  781 (792)
                          ..+......|...|.+++|+|++++|++|+.||.|++||+.+++++ .+.+|.+.|+++++      +|++.+|||
T Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s  373 (388)
T d1erja_         294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT  373 (388)
T ss_dssp             -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred             cccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEE
Confidence                2344566678889999999999999999999999999999999987 78899999999975      568999999


Q ss_pred             EeCCCcEEEeC
Q 003842          782 ASHDKFVKLWK  792 (792)
Q Consensus       782 gs~DG~I~IWd  792 (792)
                      |+.||+|+|||
T Consensus       374 ~s~Dg~I~iW~  384 (388)
T d1erja_         374 GSGDCKARIWK  384 (388)
T ss_dssp             EETTSEEEEEE
T ss_pred             EeCCCEEEEEe
Confidence            99999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-35  Score=317.09  Aligned_cols=278  Identities=16%  Similarity=0.240  Sum_probs=235.5

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCce
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS  589 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~  589 (792)
                      .+.+.+.+++++|+|+.||.++ ++.|.+||++++.....+.+|...|++++|+|++++||+|+.||+|+|||+.+....
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI   93 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence            4456778899999999999985 668999999999999999999999999999999999999999999999999985543


Q ss_pred             -eEEecccCCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCE-EEEEEcCCeEE
Q 003842          590 -LRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGR-YLAAAAENVVS  662 (792)
Q Consensus       590 -i~~~~~h~~~V~sl~fspd~~~ll~sgs~--Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~-lla~s~dg~I~  662 (792)
                       ...+..|...|.+++|+|++..++ +++.  +..+++|++++++....+.   ..+.+++|+|++.+ +++++.|+.|+
T Consensus        94 ~~~~~~~~~~~v~~v~~s~d~~~l~-~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~  172 (311)
T d1nr0a1          94 LKTTIPVFSGPVKDISWDSESKRIA-AVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA  172 (311)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCEEE-EEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred             cccccccccCccccccccccccccc-cccccccccccccccccccccccccccccccccccccccceeeecccccccccc
Confidence             355778999999999999987665 5543  5679999999988877665   45788999999886 66688899999


Q ss_pred             EEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe-------ecCCCceEEEEEeCC
Q 003842          663 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL-------SCNGNKFHSCVFHPT  734 (792)
Q Consensus       663 i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~-------~~~~~~i~si~fspd  734 (792)
                      +||+++++....+..|...|++++|+|++++|++++.| .|++||+.++.   .+..+       .+|...|.+++|+|+
T Consensus       173 i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~---~~~~~~~~~~~~~~h~~~V~~~~~s~~  249 (311)
T d1nr0a1         173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT---KTGVFEDDSLKNVAHSGSVFGLTWSPD  249 (311)
T ss_dssp             EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---EEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred             cccccccccccccccccccccccccCcccccccccccccccccccccccc---ccccccccccccccccccccccccCCC
Confidence            99999999999999999999999999999999999988 99999998763   33333       346778999999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCcEE-EEcccCC-CeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          735 YPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       735 g~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~-~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +++|++|+.||.|+|||+.+++++ .+..|.. ....+.+.+++.+|++++.||.|++||
T Consensus       250 ~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd  309 (311)
T d1nr0a1         250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN  309 (311)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEe
Confidence            999999999999999999999987 4544432 222334444566799999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.2e-36  Score=313.74  Aligned_cols=284  Identities=17%  Similarity=0.194  Sum_probs=233.5

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      ..+.+.||.+.|+||+|+|||++||+|+.||+|+|||+++++.+..+. .|...|++++|+|++. +++++.|+.|++|+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEEC
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEec
Confidence            567889999999999999999999999999999999999999888875 6899999999999986 56677899999999


Q ss_pred             CCCCCc--eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCe
Q 003842          583 ADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV  660 (792)
Q Consensus       583 l~s~~~--~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~  660 (792)
                      +.....  .......+...+.+++|++++..++ + +.++.+++|+..... .........+++|+|++..+++++.|+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-~-~~~~~i~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~  159 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV-A-ACYKHIAIYSHGKLT-EVPISYNSSCVALSNDKQFVAVGGQDSK  159 (299)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE-E-EESSEEEEEETTEEE-EEECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             cCCcccccccccccccccccccccccccccccc-c-ccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            875321  1223345778899999999987444 3 347789999954321 1223456778999999999999999999


Q ss_pred             EEEEECCCCeEEE-EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003842          661 VSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL  738 (792)
Q Consensus       661 I~i~D~~t~~~~~-~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L  738 (792)
                      |++||+++.+... ....|...|++++|+|++++|++++.+ .|++||+.++........+..|...|.+++|+|++++|
T Consensus       160 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  239 (299)
T d1nr0a2         160 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL  239 (299)
T ss_dssp             EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce
Confidence            9999998876543 445689999999999999999999998 99999998875555566677788999999999999999


Q ss_pred             EEEEcCCeEEEEECCCCcEE---EEccc-CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          739 LVIGCYQSLELWNMSENKTM---TLTAH-EGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       739 ~sgs~dg~I~IwDl~~~~~~---~~~~h-~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ++++.|+.|+|||+.++...   ....| ...|.++.| +++++|++|+.||.|+|||
T Consensus       240 ~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             EEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred             EEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEe
Confidence            99999999999999876532   33334 455666655 5678999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-34  Score=309.17  Aligned_cols=244  Identities=16%  Similarity=0.264  Sum_probs=212.3

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--EEeccCCCCEEEEEECCCCCeEEEEeC--CCcEEEE
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSF--DKTVRVW  581 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~--~~l~~h~~~V~~i~fspdg~~Lasgs~--Dg~V~IW  581 (792)
                      ..+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.+....  ..+..|...|.+++|++++++|++++.  +..++||
T Consensus        52 ~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~  131 (311)
T d1nr0a1          52 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF  131 (311)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred             EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccc
Confidence            456789999999999999999999999999999999887644  567889999999999999999999986  4569999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcC
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~d  658 (792)
                      ++++ +.....+.+|...|++++|+|+++++|++|+.|+.|++||++++++...+.   ..+.++.|+|++..+++++.|
T Consensus       132 ~~~~-~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d  210 (311)
T d1nr0a1         132 LFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD  210 (311)
T ss_dssp             ETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccc-ccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccc
Confidence            9997 567778889999999999999999889999999999999999999888775   457889999999999999999


Q ss_pred             CeEEEEECCCCeEEEEec-------CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCC-ceEEE
Q 003842          659 NVVSILDAETQACRLSLQ-------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN-KFHSC  729 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~-------~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~-~i~si  729 (792)
                      +.|++||.+++..+..+.       +|...|++++|+|++++|++++.| .|+|||++++   +++..+..+.. ....+
T Consensus       211 ~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~---~~~~~l~~~~~~~~~~~  287 (311)
T d1nr0a1         211 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL---KVEKTIPVGTRIEDQQL  287 (311)
T ss_dssp             SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSGGGCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC---cEEEEEECCCCccceEE
Confidence            999999999988877664       478899999999999999999998 9999999876   67777765543 23334


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECC
Q 003842          730 VFHPTYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       730 ~fspdg~~L~sgs~dg~I~IwDl~  753 (792)
                      .+.+++.+|++++.||.|++||.+
T Consensus       288 ~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         288 GIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEECSSCEEEEETTCCEEEEETT
T ss_pred             EEEecCCEEEEEECCCEEEEEeCC
Confidence            455566679999999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-33  Score=304.56  Aligned_cols=275  Identities=15%  Similarity=0.255  Sum_probs=237.3

Q ss_pred             cceEEEEeCCCeeeecCCC--eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS  507 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~--~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~  507 (792)
                      ...+.|++||+++++++..  +|||+.++.....+                                         ....
T Consensus        54 V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~-----------------------------------------~~~~   92 (337)
T d1gxra_          54 VCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPV-----------------------------------------SQLD   92 (337)
T ss_dssp             CCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCS-----------------------------------------EEEE
T ss_pred             EEEEEECCCCCEEEEEECCEEEEEEccCCccccee-----------------------------------------EEee
Confidence            3578999999999986644  78998765422110                                         1233


Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t--~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      ..+|.+.|.||+|+|||++|++|+.||.|+|||+..  .+....+..|...|.+++|+|++.+|++++.|+.|++||+.+
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~  172 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            457899999999999999999999999999999874  456677889999999999999999999999999999999997


Q ss_pred             CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcCCeEEE
Q 003842          586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSI  663 (792)
Q Consensus       586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i  663 (792)
                       .........|...|.+++|++++. ++++++.|+.|++||+++++.+..+.  ..+.+++|+|++..+++++.|+.|++
T Consensus       173 -~~~~~~~~~~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i  250 (337)
T d1gxra_         173 -QTLVRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV  250 (337)
T ss_dssp             -TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             -cccccccccccccccccccccccc-ccccccccccccccccccceeecccccccceEEEEEcccccccceecccccccc
Confidence             677788889999999999999976 55588999999999999999887664  56788999999999999999999999


Q ss_pred             EECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003842          664 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG  742 (792)
Q Consensus       664 ~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs  742 (792)
                      ||+++.+.. ....|...|++++|+|++++|++++.| .|++||+.++   +.+..+ .|...|.+++|+|++++|++++
T Consensus       251 ~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~---~~~~~~-~~~~~v~~~~~s~d~~~l~t~s  325 (337)
T d1gxra_         251 LHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQS-KESSSVLSCDISVDDKYIVTGS  325 (337)
T ss_dssp             EETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEE-ECSSCEEEEEECTTSCEEEEEE
T ss_pred             ccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCC---CEEEEc-cCCCCEEEEEEeCCCCEEEEEe
Confidence            999988765 456699999999999999999999999 9999999876   455444 3678899999999999999999


Q ss_pred             cCCeEEEEEC
Q 003842          743 CYQSLELWNM  752 (792)
Q Consensus       743 ~dg~I~IwDl  752 (792)
                      .|+.|+|||+
T Consensus       326 ~D~~I~vWdl  335 (337)
T d1gxra_         326 GDKKATVYEV  335 (337)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            9999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-34  Score=317.14  Aligned_cols=277  Identities=15%  Similarity=0.223  Sum_probs=229.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC-
Q 003842          511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-  587 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~-  587 (792)
                      +.++|+|++|+|||++||+|+.||.|+|||+++++  .+..+.+|.+.|++|+|+|++++|++|+.|++|+|||+.+.. 
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            35779999999999999999999999999998765  667788999999999999999999999999999999998633 


Q ss_pred             ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE-------eeCCeeEEEEecCCCEEEEEEcCCe
Q 003842          588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-------FKGGTAQMRFQPHLGRYLAAAAENV  660 (792)
Q Consensus       588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~-------~~~~~~~v~~sp~~~~lla~s~dg~  660 (792)
                      .....+.+|...|++++|+|++. .|++++.|+.|++|+++.......       +...+.+++|+|++.++++++.|+.
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccccccccccccccc-cceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence            23455678899999999999976 566899999999999877653322       2346788999999999999999999


Q ss_pred             EEEEECCC------------------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec
Q 003842          661 VSILDAET------------------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC  721 (792)
Q Consensus       661 I~i~D~~t------------------~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~  721 (792)
                      |++||...                  +..+.....|...|.+++|+|++++|++++.| .|++||+.++   ..+..+..
T Consensus       165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~  241 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVATLAS  241 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEEEEC
T ss_pred             EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc---cceeeeec
Confidence            99999754                  24667778899999999999999999999998 9999999876   67888888


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcCCeEEEEEC--CCCcEE----------------------------------------E
Q 003842          722 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNM--SENKTM----------------------------------------T  759 (792)
Q Consensus       722 ~~~~i~si~fspdg~~L~sgs~dg~I~IwDl--~~~~~~----------------------------------------~  759 (792)
                      +..+|.+++|+|++.+|++ +.|+.+++|+.  ......                                        .
T Consensus       242 ~~~~v~s~~fs~d~~~la~-g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (371)
T d1k8kc_         242 ETLPLLAVTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL  320 (371)
T ss_dssp             SSCCEEEEEEEETTEEEEE-ETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred             ccccceeeeecCCCCEEEE-EcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecccccccee
Confidence            9999999999999976665 55776655543  322111                                        0


Q ss_pred             EcccCCCeEEEEEeCCC----CEEEEEeCCCcEEEeC
Q 003842          760 LTAHEGLIAALAVSTET----GYVASASHDKFVKLWK  792 (792)
Q Consensus       760 ~~~h~~~V~sl~fspdg----~~LaSgs~DG~I~IWd  792 (792)
                      ...|.+.|+++++.+.+    ..|+|+|.||.|+|||
T Consensus       321 ~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~  357 (371)
T d1k8kc_         321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  357 (371)
T ss_dssp             SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             cccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence            01288899999998754    3689999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-32  Score=300.04  Aligned_cols=291  Identities=22%  Similarity=0.310  Sum_probs=234.8

Q ss_pred             cceEEEEeCCCeeeecCCC--eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS  507 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~--~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~  507 (792)
                      ...+.|++||.+++++++.  +|||+.+++.+..+.......                            ..........
T Consensus        65 V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~  116 (388)
T d1erja_          65 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAAN----------------------------KDPENLNTSS  116 (388)
T ss_dssp             CCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-------------------------------------------
T ss_pred             EEEEEECCCCCEEEEEeCCeEEEEEecccceEeeeccccccc----------------------------cccccccccc
Confidence            4579999999998886533  899999987654433211100                            0001112234


Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG  587 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~  587 (792)
                      ..+|...|++++|+|+|++|++|+.||.|++||..+++.+..+.+|...|.++.|++++..+++++.++.|++||+.+ .
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~  195 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-G  195 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-T
T ss_pred             ccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccc-c
Confidence            567899999999999999999999999999999999999999999999999999999999999999999999999987 4


Q ss_pred             ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----------CCeeEEEEecCCCEEEEEEc
Q 003842          588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------GGTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----------~~~~~v~~sp~~~~lla~s~  657 (792)
                      ....... +...+.++.|++....+|++++.|+.|++||+.++.....+.          ..+.++.|++++..+++++.
T Consensus       196 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  274 (388)
T d1erja_         196 QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  274 (388)
T ss_dssp             EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence            4444444 445566777777666788899999999999999988776643          35778999999999999999


Q ss_pred             CCeEEEEECCCCe------------EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCC
Q 003842          658 ENVVSILDAETQA------------CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN  724 (792)
Q Consensus       658 dg~I~i~D~~t~~------------~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~  724 (792)
                      |+.|++||+++..            .......|...|.+++|+|++++|++++.| .|++||++++   +++..+.+|..
T Consensus       275 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~l~~H~~  351 (388)
T d1erja_         275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRN  351 (388)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred             CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEeCCCC
Confidence            9999999987643            344556788999999999999999999998 9999999877   78888999999


Q ss_pred             ceEEEEE------eCCCCEEEEEEcCCeEEEEECC
Q 003842          725 KFHSCVF------HPTYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       725 ~i~si~f------spdg~~L~sgs~dg~I~IwDl~  753 (792)
                      .|.++++      +|++.+|++|+.||+|+|||++
T Consensus       352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999875      6789999999999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-32  Score=291.18  Aligned_cols=284  Identities=17%  Similarity=0.299  Sum_probs=224.4

Q ss_pred             cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEE
Q 003842          500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR  579 (792)
Q Consensus       500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~  579 (792)
                      ..++..+.|+||.+.|.+ +++++|++||+|+.||+|+|||+.+++++.++.+|...|++++|+++  +|++|+.|+.++
T Consensus         4 ~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~   80 (342)
T d2ovrb2           4 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLK   80 (342)
T ss_dssp             SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEE
T ss_pred             CCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccc
Confidence            345677889999999865 46678999999999999999999999999999999999999999875  999999999999


Q ss_pred             EEeCCCCCceeEEecccCCCeEEE--------------------------------------EEcCCCCeEEEEEeCCCc
Q 003842          580 VWDADNPGYSLRTFMGHSASVMSL--------------------------------------DFHPNKDDLICSCDGDGE  621 (792)
Q Consensus       580 IWdl~s~~~~i~~~~~h~~~V~sl--------------------------------------~fspd~~~ll~sgs~Dg~  621 (792)
                      +|+.... ........+...+...                                      .+.... .++++++.|+.
T Consensus        81 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~  158 (342)
T d2ovrb2          81 VWNAETG-ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG-RRVVSGAYDFM  158 (342)
T ss_dssp             EEETTTT-EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECS-SCEEEEETTSC
T ss_pred             ccccccc-cceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecccc-ceeeeecCCCe
Confidence            9998752 2222111111111111                                      111122 24557888999


Q ss_pred             EEEEEcCCCeeEEEeeCC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 003842          622 IRYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED  700 (792)
Q Consensus       622 I~iwdl~~~~~~~~~~~~-~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d  700 (792)
                      |++||++..+++..+.++ .....+.+++..+++++.|+.|++||++.++.+..+.+|...|.+++++  +++|++++.|
T Consensus       159 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d  236 (342)
T d2ovrb2         159 VKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNAD  236 (342)
T ss_dssp             EEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETT
T ss_pred             EEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCC
Confidence            999999988888777654 4456677788999999999999999999999999999999999988876  4699999999


Q ss_pred             -eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EE-----cccCCCeEEEEEe
Q 003842          701 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL-----TAHEGLIAALAVS  773 (792)
Q Consensus       701 -~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~-----~~h~~~V~sl~fs  773 (792)
                       .|++||+........+.....+...+.++.+  +++++++++.||.|+|||+++++.+ .+     .+|.+.|++++|+
T Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s  314 (342)
T d2ovrb2         237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS  314 (342)
T ss_dssp             SCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC
T ss_pred             CEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEEC
Confidence             9999999876433333333334555666655  5568999999999999999999876 33     2577889999999


Q ss_pred             CCCCEEEEEeCCCc----EEEeC
Q 003842          774 TETGYVASASHDKF----VKLWK  792 (792)
Q Consensus       774 pdg~~LaSgs~DG~----I~IWd  792 (792)
                      |++.+||+|+.||+    |++||
T Consensus       315 ~~~~~la~g~~dGt~~~~l~~~D  337 (342)
T d2ovrb2         315 NTKLVCAVGSRNGTEETKLLVLD  337 (342)
T ss_dssp             SSEEEEEEECSSSSSCCEEEEEE
T ss_pred             CCCCEEEEEeCCCCCeeEEEEEe
Confidence            99999999999985    89996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.6e-32  Score=282.57  Aligned_cols=271  Identities=23%  Similarity=0.477  Sum_probs=241.3

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|+|++.++++++.+   +|||+.++++                                              +.
T Consensus        20 I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~----------------------------------------------~~   53 (317)
T d1vyhc1          20 VTRVIFHPVFSVMVSASEDATIKVWDYETGDF----------------------------------------------ER   53 (317)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTTCCC----------------------------------------------CE
T ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE----------------------------------------------EE
Confidence            4468899999998886544   8888876543                                              24


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      .+.+|.+.|.+++|++++.++++++.++.+.+|+....+....+..|...+.++.|++++..|++++.|+.+++||+++ 
T Consensus        54 ~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-  132 (317)
T d1vyhc1          54 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-  132 (317)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-
T ss_pred             EEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeeccc-
Confidence            5678999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecC---------------
Q 003842          587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPH---------------  648 (792)
Q Consensus       587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~---------------  648 (792)
                      +..+..+.+|...+.+++|++++. +|++++.|+.|++|++.+++....+..   .+..+.+.++               
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  211 (317)
T d1vyhc1         133 GYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK  211 (317)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred             ceeeeEEccCCCcceeeecccCCC-EEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceee
Confidence            677888999999999999999976 667999999999999999988877643   3445555554               


Q ss_pred             -----CCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC
Q 003842          649 -----LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN  722 (792)
Q Consensus       649 -----~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~  722 (792)
                           +..+++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.| .|+|||+.++   +++..+.+|
T Consensus       212 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h  288 (317)
T d1vyhc1         212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAH  288 (317)
T ss_dssp             -----CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECC
T ss_pred             eeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC---cEEEEEcCC
Confidence                 3568889999999999999999999999999999999999999999999998 9999999876   677888899


Q ss_pred             CCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003842          723 GNKFHSCVFHPTYPSLLVIGCYQSLELWN  751 (792)
Q Consensus       723 ~~~i~si~fspdg~~L~sgs~dg~I~IwD  751 (792)
                      ...|++++|+|++++|++++.||.|+|||
T Consensus       289 ~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         289 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-31  Score=284.09  Aligned_cols=300  Identities=18%  Similarity=0.288  Sum_probs=235.8

Q ss_pred             EEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeeeee
Q 003842          433 MMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVR  509 (792)
Q Consensus       433 l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~l~  509 (792)
                      .++++||.++++++.+   +|||+.+++                                              .+..+.
T Consensus        17 tc~~~~~~~l~tgs~Dg~i~vWd~~~~~----------------------------------------------~~~~l~   50 (355)
T d1nexb2          17 TCLQFEDNYVITGADDKMIRVYDSINKK----------------------------------------------FLLQLS   50 (355)
T ss_dssp             EEEEEETTEEEEEETTTEEEEEETTTTE----------------------------------------------EEEEEE
T ss_pred             EEEEECCCEEEEEeCCCeEEEEECCCCc----------------------------------------------EEEEEE
Confidence            3567788888886554   788876653                                              345678


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC--CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG  587 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h--~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~  587 (792)
                      +|.+.|++++|+++ .+|++|+.|+.|++|++...+.......+  ...+..+.+.+++.++++++.|+.|++||+.+..
T Consensus        51 ~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~  129 (355)
T d1nexb2          51 GHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES  129 (355)
T ss_dssp             CCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC--
T ss_pred             CCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCc
Confidence            99999999999986 48999999999999999998877766543  3445667788899999999999999999997632


Q ss_pred             ce----------------------eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeE
Q 003842          588 YS----------------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQ  642 (792)
Q Consensus       588 ~~----------------------i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~  642 (792)
                      ..                      +.....|...|.....  ++ .+++++..|+.|++||+++++.+..+..   ....
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  206 (355)
T d1nexb2         130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG--HG-NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS  206 (355)
T ss_dssp             ---------CCCEEESCTTTCTTEEEEEECCSSCEEEEEE--ET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             eeccccccceeccceeccccccceeeeeeecccccccccc--cc-ceeeeecccceeeeeecccccceeeeecccccccc
Confidence            11                      1222234445544443  33 3677899999999999999998877653   4567


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec
Q 003842          643 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC  721 (792)
Q Consensus       643 v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~  721 (792)
                      +.+++.+..+++++.|+.|++||.+++..+..+.+|...|.+++|+  +++|++++.| .|++||+++..   .  .+..
T Consensus       207 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~---~--~~~~  279 (355)
T d1nexb2         207 TIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS---R--KFSY  279 (355)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC---E--EEEE
T ss_pred             ccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccc---e--eccc
Confidence            8899999999999999999999999999999999999999999986  5789999999 99999998652   2  2333


Q ss_pred             CCCceEEE-EEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          722 NGNKFHSC-VFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       722 ~~~~i~si-~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                      |...+..+ ++++++.+|+ ++.|+.|+|||+++++++  .+.+|...|++++|+++ .+|++++.||.++||
T Consensus       280 ~~~~~~~~~~~~~~~~~l~-~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~  350 (355)
T d1nexb2         280 HHTNLSAITTFYVSDNILV-SGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLE  350 (355)
T ss_dssp             ECTTCCCCCEEEECSSEEE-EEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred             ccCCceEEEEEcCCCCEEE-EEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEE
Confidence            44455544 5566776555 456899999999999877  45789999999999987 478889999998776

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-31  Score=282.59  Aligned_cols=277  Identities=20%  Similarity=0.332  Sum_probs=222.0

Q ss_pred             eeeeeecCCCCe-EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          504 EANSVRASTSKV-ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       504 ~~~~l~~H~~~V-~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      +..+|+||.+.| +|++|  |+++||+|+.||+|+|||+.+++.+.++.+|.+.|++|+|+++ .+|++|+.|+.|++|+
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence            356799999886 56655  6789999999999999999999999999999999999999985 5899999999999999


Q ss_pred             CCCCCceeEEecccC--CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----------------------
Q 003842          583 ADNPGYSLRTFMGHS--ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----------------------  637 (792)
Q Consensus       583 l~s~~~~i~~~~~h~--~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----------------------  637 (792)
                      +.. ...........  ..+..+.+.+++ .++++++.|+.|++||+++........                       
T Consensus        81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d1nexb2          81 IKK-GCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  158 (355)
T ss_dssp             TTT-TEEEEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred             ccc-ccccccccccccccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence            987 44444443333  334455566664 467799999999999998765443211                       


Q ss_pred             C-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 003842          638 G-GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC  715 (792)
Q Consensus       638 ~-~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~  715 (792)
                      . ......+.+++..++++..|+.|++||+++++.+..+.++...+.++.|++++.++++++.| .|++||+.++   ..
T Consensus       159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~  235 (355)
T d1nexb2         159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---EL  235 (355)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC---CE
T ss_pred             eccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccc---cc
Confidence            0 11234566778899999999999999999999999999999999999999999999999999 9999999876   77


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEE-EEeCCCCEEEEEeCCCcEEEeC
Q 003842          716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAAL-AVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       716 i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl-~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +..+..|...|.+++|++  ++|++++.||.|++||+.+..... ..|...+.++ +|++++.+|++| .||.|+|||
T Consensus       236 ~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd  309 (355)
T d1nexb2         236 MYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF-SYHHTNLSAITTFYVSDNILVSG-SENQFNIYN  309 (355)
T ss_dssp             EEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE-EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEE
T ss_pred             cccccccccccccccccc--ceeeeeecccccccccccccceec-ccccCCceEEEEEcCCCCEEEEE-eCCEEEEEE
Confidence            888889999999999864  689999999999999999887553 3455555554 566777777665 589999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-30  Score=267.06  Aligned_cols=275  Identities=22%  Similarity=0.428  Sum_probs=220.9

Q ss_pred             ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003842          501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV  580 (792)
Q Consensus       501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I  580 (792)
                      .+..+....+|...|+|++|  ||++||+|+.||+|+|||+.+++++.++.+|...|++|+|  ++++|++|+.|+.|++
T Consensus         4 ~~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~   79 (293)
T d1p22a2           4 SLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV   79 (293)
T ss_dssp             CCCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             eEEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccc
Confidence            34566777889999999765  7899999999999999999999999999999999999988  5679999999999999


Q ss_pred             EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE---EeeCC-eeEEEEecCCCEEEEEE
Q 003842          581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VFKGG-TAQMRFQPHLGRYLAAA  656 (792)
Q Consensus       581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~---~~~~~-~~~v~~sp~~~~lla~s  656 (792)
                      |++.. +........+......  +..... .++++..++.+++||+.......   .+..+ .....+......+++++
T Consensus        80 ~~~~~-~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s  155 (293)
T d1p22a2          80 WDVNT-GEMLNTLIHHCEAVLH--LRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS  155 (293)
T ss_dssp             EESSS-CCEEEEECCCCSCEEE--EECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred             ccccc-cccccccccccccccc--cccccc-ceeecccccceeEeeccccccccccccccccccccccceeccccccccc
Confidence            99997 4444444444444333  333333 45688899999999998765432   22222 22234445567888999


Q ss_pred             cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003842          657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY  735 (792)
Q Consensus       657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg  735 (792)
                      .|+.|++||.++++.+..+.++...|..+.++  +.+|++++.| .|++||+++.   ..+..+..+...+..  +.+++
T Consensus       156 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~--~~~~~  228 (293)
T d1p22a2         156 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRC--IRFDN  228 (293)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEE--EECCS
T ss_pred             CCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccc---eeeeeecccceeeee--ccccc
Confidence            99999999999999999999999999888875  5689999988 9999999876   667777777776654  56788


Q ss_pred             CEEEEEEcCCeEEEEECCCC---------cE-EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          736 PSLLVIGCYQSLELWNMSEN---------KT-MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       736 ~~L~sgs~dg~I~IwDl~~~---------~~-~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .+|++++.||.|++||+...         .. ..+.+|.+.|++++|  ++.+||||+.||+|+|||
T Consensus       229 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             eEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            89999999999999997432         23 367899999999999  467899999999999998

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.9e-31  Score=287.81  Aligned_cols=280  Identities=16%  Similarity=0.198  Sum_probs=222.6

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...++|+|||+.+++++.+   +|||..+++                                            +..+.
T Consensus        10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~--------------------------------------------~~~~~   45 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--------------------------------------------WVQVH   45 (371)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTE--------------------------------------------EEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCCC--------------------------------------------EEEEE
Confidence            5578999999998876544   678765432                                            23556


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~--~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      .+++|.+.|++|+|+|++++||+|+.|++|+|||+.++...  ..+.+|...|++++|+|++++|++++.|+.|++|+++
T Consensus        46 ~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~  125 (371)
T d1k8kc_          46 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE  125 (371)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeee
Confidence            78899999999999999999999999999999999876544  4456889999999999999999999999999999998


Q ss_pred             CCCce---eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe------------------eEEEe---eCCe
Q 003842          585 NPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------------------CTRVF---KGGT  640 (792)
Q Consensus       585 s~~~~---i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~------------------~~~~~---~~~~  640 (792)
                      .....   ......|...|.+++|+|++. +|++|+.|+.|++||+....                  .+...   ...+
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  204 (371)
T d1k8kc_         126 QENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV  204 (371)
T ss_dssp             TTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred             ccccccccccccccccccccccccccccc-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcE
Confidence            64432   334557889999999999976 56799999999999986532                  22222   2346


Q ss_pred             eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcc------
Q 003842          641 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE------  714 (792)
Q Consensus       641 ~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~------  714 (792)
                      ..++|+|++..+++++.|+.|++||+.++..+..+..|..+|.+++|++++++|++|.++.+++|+........      
T Consensus       205 ~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~  284 (371)
T d1k8kc_         205 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRL  284 (371)
T ss_dssp             EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCC
T ss_pred             EEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeee
Confidence            78999999999999999999999999999999999999999999999999999998877755554432211000      


Q ss_pred             ----eE----------------------------EEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCC
Q 003842          715 ----CV----------------------------HELSCNGNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSE  754 (792)
Q Consensus       715 ----~i----------------------------~~~~~~~~~i~si~fspdg----~~L~sgs~dg~I~IwDl~~  754 (792)
                          ..                            .....|.+.|.++++.+.+    ..|++++.||.|+|||+++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         285 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                00                            0001267789999998754    3589999999999999854

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=6.9e-31  Score=274.39  Aligned_cols=267  Identities=13%  Similarity=0.187  Sum_probs=224.1

Q ss_pred             eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      .+.+++|++|.++|+|++|++    |++|+.||+|++||+.++     ...|...|.+++|+++. .|++++.|++|++|
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w   72 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN   72 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence            367889999999999999987    999999999999998764     35899999999998764 68999999999999


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCC-e
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN-V  660 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg-~  660 (792)
                      ++...        .....+.++++++++. ++ ..+.++.+.+|+..+++.+..+.......++++++..+++++.++ .
T Consensus        73 ~~~~~--------~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  142 (287)
T d1pgua2          73 GITKH--------EFGSQPKVASANNDGF-TA-VLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNT  142 (287)
T ss_dssp             TEEEE--------ECSSCEEEEEECSSSE-EE-EEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSC
T ss_pred             ccccc--------ccccceeeeeeccCCc-eE-EEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccce
Confidence            98641        1345677888888754 44 345577899999999999998887777888999999999988875 7


Q ss_pred             EEEEECCCCeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceE-EEeecCCCceEEEEEeCC---
Q 003842          661 VSILDAETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV-HELSCNGNKFHSCVFHPT---  734 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~-~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i-~~~~~~~~~i~si~fspd---  734 (792)
                      |++|++........+. .|...|++++|+|++.+|++++.| .|++||+.++   ... ..+..|...|.+++|+|.   
T Consensus       143 v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~---~~~~~~~~~h~~~v~~~~~~p~~~~  219 (287)
T d1pgua2         143 IQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKG  219 (287)
T ss_dssp             EEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC--
T ss_pred             eeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccc---ccccccccccccccceeeecccccc
Confidence            9999998877666655 477889999999999999999999 9999999765   333 345678889999999874   


Q ss_pred             -------CCEEEEEEcCCeEEEEECCCC-cEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          735 -------YPSLLVIGCYQSLELWNMSEN-KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       735 -------g~~L~sgs~dg~I~IwDl~~~-~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                             +.+|++|+.|+.|+|||+.++ +.+ .+.+|...|++++|++++ .|++++.||.|+|||
T Consensus       220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN  285 (287)
T ss_dssp             ----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             cccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEE
Confidence                   568999999999999999764 344 556899999999999986 688999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.3e-30  Score=277.60  Aligned_cols=249  Identities=17%  Similarity=0.265  Sum_probs=199.7

Q ss_pred             eeeeeecCC-CCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcee--------EEeccCCCCEEEEEECCCCCeEEEE
Q 003842          504 EANSVRAST-SKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSK--------TNLEEHSSLITDVRFSPSMPRLATS  572 (792)
Q Consensus       504 ~~~~l~~H~-~~V~~lafsp--dg~~Lasgs~Dg~I~vWdl~t~~~~--------~~l~~h~~~V~~i~fspdg~~Lasg  572 (792)
                      .+..+.+|. ..|++++|+|  +|.+||+|+.||+|+|||+..++..        ..+..|.+.|.+++|++++++|+++
T Consensus        54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  133 (325)
T d1pgua1          54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV  133 (325)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee
Confidence            345566774 6799999998  6789999999999999998754432        2345688999999999999998877


Q ss_pred             eC--CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCC
Q 003842          573 SF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG  650 (792)
Q Consensus       573 s~--Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~  650 (792)
                      +.  ++.+++|+.++ +..+..+.+|...|.+++|+|++..++++++.|+.|++||+...+....+.             
T Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~-------------  199 (325)
T d1pgua1         134 GEGRDNFGVFISWDS-GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-------------  199 (325)
T ss_dssp             ECCSSCSEEEEETTT-CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-------------
T ss_pred             eccccceEEEEeecc-cccceeeeecccccccccccccccceEEEeecccccccccccccccceecc-------------
Confidence            64  67899999987 678889999999999999999998888899999999999987655433221             


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEE
Q 003842          651 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS  728 (792)
Q Consensus       651 ~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd-g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~s  728 (792)
                                             ....|...|++++|+|+ +.+|++++.| .|++||++++   +++..+..|...+..
T Consensus       200 -----------------------~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~---~~~~~l~~~~~~v~~  253 (325)
T d1pgua1         200 -----------------------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG---EFLKYIEDDQEPVQG  253 (325)
T ss_dssp             -----------------------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC---CEEEECCBTTBCCCS
T ss_pred             -----------------------cccCCCCccEEeeeccccceeccccccccceeeeeeccc---ccccccccccccccc
Confidence                                   12347788999999996 6899999988 9999999876   677888877777665


Q ss_pred             EEEe---CCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCC--CeEEEEEeC-CCCEEEEEeCCCcEEEeC
Q 003842          729 CVFH---PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG--LIAALAVST-ETGYVASASHDKFVKLWK  792 (792)
Q Consensus       729 i~fs---pdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~--~V~sl~fsp-dg~~LaSgs~DG~I~IWd  792 (792)
                      +.|+   +++.+|++++.|+.|+|||+.+++++ .+..|..  .+..++|.+ .+.+|++++.||.|+|||
T Consensus       254 ~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE  324 (325)
T ss_dssp             CEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             ceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence            5555   78999999999999999999999887 3444443  334444433 234889999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-30  Score=273.81  Aligned_cols=288  Identities=13%  Similarity=0.072  Sum_probs=217.5

Q ss_pred             eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE---eccCCCCEEEEEECCCC-CeEEEEeCCCcE
Q 003842          503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN---LEEHSSLITDVRFSPSM-PRLATSSFDKTV  578 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~---l~~h~~~V~~i~fspdg-~~Lasgs~Dg~V  578 (792)
                      +.+....+|.+.|++|+|+|++++||+|+.||+|+|||+++......   ..+|...|++++|++++ .+|++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            46677889999999999999999999999999999999976654333   33699999999999864 589999999999


Q ss_pred             EEEeCCCCCceeEEecccCC-CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----e-----CCeeEEEEecC
Q 003842          579 RVWDADNPGYSLRTFMGHSA-SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----K-----GGTAQMRFQPH  648 (792)
Q Consensus       579 ~IWdl~s~~~~i~~~~~h~~-~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~-----~~~~~v~~sp~  648 (792)
                      ++|++..... ......+.. ......+.++ ..++++++.|+.+++||++........    .     .....+.+.+.
T Consensus        82 ~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
T d1yfqa_          82 LKVDLIGSPS-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             EEECSSSSSS-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             eeeecccccc-cccccccccccccccccccc-cccccccccccccceeeccccccceeeecccccccccceeeeeeeecc
Confidence            9999997444 444444443 3444444444 456779999999999998754332221    1     23345678888


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeE---EEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCc------ceEE
Q 003842          649 LGRYLAAAAENVVSILDAETQAC---RLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEG------ECVH  717 (792)
Q Consensus       649 ~~~lla~s~dg~I~i~D~~t~~~---~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~------~~i~  717 (792)
                      ...+++++.|+.|++||++....   ......+...+.++.+.+ ++..+++++.| .+.+|++......      ....
T Consensus       160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~  239 (342)
T d1yfqa_         160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence            89999999999999999977532   223334555566666655 67788888888 9999998654221      1111


Q ss_pred             ------EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003842          718 ------ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       718 ------~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW  791 (792)
                            ....+...+.+++|+|++++|++|+.||.|+|||+.+++.+....+...+..++|++++++|++++.|+.+++|
T Consensus       240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred             eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEe
Confidence                  11235567899999999999999999999999999999988555444566778889999999999999887776


Q ss_pred             C
Q 003842          792 K  792 (792)
Q Consensus       792 d  792 (792)
                      .
T Consensus       320 ~  320 (342)
T d1yfqa_         320 A  320 (342)
T ss_dssp             S
T ss_pred             e
Confidence            3

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=3e-28  Score=257.65  Aligned_cols=270  Identities=23%  Similarity=0.424  Sum_probs=230.2

Q ss_pred             cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003842          430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN  506 (792)
Q Consensus       430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~  506 (792)
                      ...+.|+||+.++++++.+   +|||+.+++                                              .+.
T Consensus        58 I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~----------------------------------------------~~~   91 (340)
T d1tbga_          58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTN----------------------------------------------KVH   91 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTTE----------------------------------------------EEE
T ss_pred             EEEEEECCCCCEEEEEECCCceeeeecccce----------------------------------------------eEE
Confidence            4468999999999886554   788877654                                              334


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003842          507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD  582 (792)
Q Consensus       507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~----~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd  582 (792)
                      .+..|...|.+++|+|++++|++|+.|+.|++|+....    .....+.+|...+....+.. +..++....|..+..|+
T Consensus        92 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  170 (340)
T d1tbga_          92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWD  170 (340)
T ss_dssp             EEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEE
T ss_pred             EEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccc-ccccccccccccccccc
Confidence            56789999999999999999999999999999997643    44556777887777666554 45788888999999999


Q ss_pred             CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCC
Q 003842          583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN  659 (792)
Q Consensus       583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg  659 (792)
                      ... .........+...+..+.+.+.+. ++++++.|+.|++||+++++++..+.+   .+.+++|+|++..+++++.|+
T Consensus       171 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~  248 (340)
T d1tbga_         171 IET-GQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA  248 (340)
T ss_dssp             TTT-TEEEEEEECCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccc-ccccccccccceeEeeeccccccc-eeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCC
Confidence            886 555666667888899999988865 666999999999999999999888754   577899999999999999999


Q ss_pred             eEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003842          660 VVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP  736 (792)
Q Consensus       660 ~I~i~D~~t~~~~~~l~--~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~  736 (792)
                      .|++||++....+..+.  .+...|.+++|++++++|++++.| .|++||+.++   +++..+.+|...|++++|+|++.
T Consensus       249 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~H~~~V~~l~~s~d~~  325 (340)
T d1tbga_         249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             CEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS
T ss_pred             eEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEeCCCC
Confidence            99999999988776654  466789999999999999999999 9999999876   78889999999999999999999


Q ss_pred             EEEEEEcCCeEEEEE
Q 003842          737 SLLVIGCYQSLELWN  751 (792)
Q Consensus       737 ~L~sgs~dg~I~IwD  751 (792)
                      +|++|+.||.|+|||
T Consensus       326 ~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         326 AVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEETTSCEEEEC
T ss_pred             EEEEEccCCEEEEeC
Confidence            999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.3e-28  Score=258.35  Aligned_cols=239  Identities=15%  Similarity=0.173  Sum_probs=196.3

Q ss_pred             CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe-cccCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003842          544 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEI  622 (792)
Q Consensus       544 ~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~-~~h~~~V~sl~fspd~~~ll~sgs~Dg~I  622 (792)
                      |+..+.+.+|...|++|+|+|++++|++|+.||+|+|||+++ +..+..+ ..|...|++++|+|++. ++ +++.|+.|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~~h~~~v~~v~~~~~g~-~~-~~~~d~~v   78 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGD-LF-TVSWDDHL   78 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTTSC-EE-EEETTTEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcCCCCCcEEEEEeeccce-ee-cccceeeE
Confidence            567889999999999999999999999999999999999987 5566666 46899999999999975 44 67789999


Q ss_pred             EEEEcCCCee------EEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 003842          623 RYWSINNGSC------TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS  696 (792)
Q Consensus       623 ~iwdl~~~~~------~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las  696 (792)
                      ++|++.....      .......+..++|++++..+ +++.++.+.+|+....  ....  ....+.+++|+|++++|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~-~~~~~~~i~~~~~~~~--~~~~--~~~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA-VAACYKHIAIYSHGKL--TEVP--ISYNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE-EEEESSEEEEEETTEE--EEEE--CSSCEEEEEECTTSCEEEE
T ss_pred             EEeccCCccccccccccccccccccccccccccccc-cccccccccccccccc--cccc--ccccccccccccccccccc
Confidence            9999865432      22334566788999987655 4556678999996532  2222  3456889999999999999


Q ss_pred             EeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----EEcccCCCeEEEE
Q 003842          697 VSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHEGLIAALA  771 (792)
Q Consensus       697 ~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~----~~~~h~~~V~sl~  771 (792)
                      ++.| .|++||+++...  .......|...|.+++|+|++.+|++++.++.|++||+.++...    .+..|...|++++
T Consensus       154 g~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~  231 (299)
T d1nr0a2         154 GGQDSKVHVYKLSGASV--SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS  231 (299)
T ss_dssp             EETTSEEEEEEEETTEE--EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred             ccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9998 999999976521  12234467889999999999999999999999999999887665    4567899999999


Q ss_pred             EeCCCCEEEEEeCCCcEEEeC
Q 003842          772 VSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       772 fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |+|++++|++|+.||.|+|||
T Consensus       232 ~s~~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         232 WSPDNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             ECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccceEEEcCCCEEEEEE
Confidence            999999999999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.9e-28  Score=266.79  Aligned_cols=287  Identities=14%  Similarity=0.188  Sum_probs=212.6

Q ss_pred             eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce------eEEeccCCCCEEEEEE------CC-CCCeE
Q 003842          503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS------KTNLEEHSSLITDVRF------SP-SMPRL  569 (792)
Q Consensus       503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~------~~~l~~h~~~V~~i~f------sp-dg~~L  569 (792)
                      ......++|.+.|+++++++  ++|++|+.|++|+|||..+.+.      ......|...+..+.+      .. ++.++
T Consensus         5 ~~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (393)
T d1sq9a_           5 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   82 (393)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             eeeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEE
Confidence            35567789999999999875  5999999999999999875432      2223345444433332      21 23468


Q ss_pred             EEEeCCCcEEEEeCCCCCceeE----Ee-----cccCCCeEEEEEcCCC----CeEEEEEeCCCcEEEEEcCCCe-----
Q 003842          570 ATSSFDKTVRVWDADNPGYSLR----TF-----MGHSASVMSLDFHPNK----DDLICSCDGDGEIRYWSINNGS-----  631 (792)
Q Consensus       570 asgs~Dg~V~IWdl~s~~~~i~----~~-----~~h~~~V~sl~fspd~----~~ll~sgs~Dg~I~iwdl~~~~-----  631 (792)
                      ++++.||.|++|++........    ..     ..+...+..++|.++.    ..++++++.||.|++|++....     
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            8999999999999865332111    11     1345668888887764    2567789999999999985321     


Q ss_pred             ----------eEEEe------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe------cCCCCCeEEEEEcC
Q 003842          632 ----------CTRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL------QGHTKPIDSVCWDP  689 (792)
Q Consensus       632 ----------~~~~~------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l------~~h~~~V~sv~~sp  689 (792)
                                .....      ...+.+++|+|++ .+++++.|+.|+|||+++++.+..+      .+|..+|++|+|+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence                      00111      1235679999985 8889999999999999999887654      45889999999999


Q ss_pred             CCCEEEEEeCC----eEEEEECCCCCCcce----------EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003842          690 SGELLASVSED----SVRVWTVGSGSEGEC----------VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN  755 (792)
Q Consensus       690 dg~~Las~s~d----~I~IwDl~s~~~~~~----------i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~  755 (792)
                      +|++|++++.|    .|++||+.++.....          ...+.+|...|++++|+|++++|++++.|++|+|||+.++
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence            99999999987    399999987732211          1123468889999999999999999999999999999999


Q ss_pred             cEE-EEcccCC---------------------CeEEEEEeCCC----------CEEEEEeCCCcEEEeC
Q 003842          756 KTM-TLTAHEG---------------------LIAALAVSTET----------GYVASASHDKFVKLWK  792 (792)
Q Consensus       756 ~~~-~~~~h~~---------------------~V~sl~fspdg----------~~LaSgs~DG~I~IWd  792 (792)
                      +++ ++.+|..                     .+.++.|.+.+          +.|++++.|+.|++|+
T Consensus       322 ~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         322 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence            888 6777753                     34566665532          4588999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.5e-28  Score=263.05  Aligned_cols=276  Identities=8%  Similarity=-0.024  Sum_probs=212.5

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG  587 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg--~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~  587 (792)
                      +|...|.+++|+|||++|++++.+.  .|++||+++++.. .+..|...|.+++|+|++++|++++.++.+++|++.+ .
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~-~  117 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-G  117 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-C
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccc-c
Confidence            5788899999999999998877553  7999999887654 6778999999999999999999999999999999987 6


Q ss_pred             ceeEEecccCCCeEEEEEcCCCCeEEEEEe---------CCCcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEE
Q 003842          588 YSLRTFMGHSASVMSLDFHPNKDDLICSCD---------GDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAA  656 (792)
Q Consensus       588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs---------~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s  656 (792)
                      .....+..|...+.+++|+|++..++++..         .++.+++||+.+++......  .....+.|+|++.+|++++
T Consensus       118 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         118 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEe
Confidence            777888889999999999999987765442         34569999999988766554  3456688999999999999


Q ss_pred             cCCeEEEEECCCCeE-------EEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCc
Q 003842          657 AENVVSILDAETQAC-------RLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK  725 (792)
Q Consensus       657 ~dg~I~i~D~~t~~~-------~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~  725 (792)
                      .++.+.+||......       ...+..+...+..++|++++..++++..+    ..++|.+....  .....+..+...
T Consensus       198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  275 (360)
T d1k32a3         198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP--GDYRMIIPLESS  275 (360)
T ss_dssp             SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC--BCEEEEEECSSE
T ss_pred             CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCc--CceeEeeecCCC
Confidence            999999999765432       33444556666667788887776655433    23344443211  122333344445


Q ss_pred             eEEEEEeCCC---CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          726 FHSCVFHPTY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       726 i~si~fspdg---~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +..+.+...+   .+++.++.++.|++||+.+++...+.   +.|.+++|+|||++|++++.||.|++||
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~v~~~~~SpDG~~l~~~~~Dg~i~v~d  342 (360)
T d1k32a3         276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKDDGKIYTFP  342 (360)
T ss_dssp             EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             ceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEec---CCcCEEEECCCCCEEEEEECCCeEEEEE
Confidence            5555554443   35677778889999999998865544   4589999999999999999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4e-25  Score=227.04  Aligned_cols=266  Identities=21%  Similarity=0.406  Sum_probs=215.8

Q ss_pred             CcceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003842          429 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA  505 (792)
Q Consensus       429 ~k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~  505 (792)
                      .+.+.++++||.++++++.+   +|||+.+++                                              .+
T Consensus        15 ~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~----------------------------------------------~~   48 (293)
T d1p22a2          15 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE----------------------------------------------CK   48 (293)
T ss_dssp             CCCEEEEECCSSEEEEEESSSCEEEEESSSCC----------------------------------------------EE
T ss_pred             CCCEEEEEEcCCEEEEEeCCCeEEEEECCCCc----------------------------------------------EE
Confidence            35566788999998886554   788876543                                              34


Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN  585 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s  585 (792)
                      ..+++|.+.|+|++|  ++++|++|+.|+.|++|++..+........+......  +......++++..++.+++||+..
T Consensus        49 ~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  124 (293)
T d1p22a2          49 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH--LRFNNGMMVTCSKDRSIAVWDMAS  124 (293)
T ss_dssp             EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE--EECCTTEEEEEETTSCEEEEECSS
T ss_pred             EEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccccccccc--ccccccceeecccccceeEeeccc
Confidence            567899999999987  5779999999999999999999888877766555443  444566899999999999999986


Q ss_pred             CCc--eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeE-EEEecCCCEEEEEEcCCeEE
Q 003842          586 PGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-MRFQPHLGRYLAAAAENVVS  662 (792)
Q Consensus       586 ~~~--~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~-v~~sp~~~~lla~s~dg~I~  662 (792)
                      ...  ....+..|...|.++.+.+.   .+++++.|+.|++||+++++.+..+.+.... ..+.+++..+++++.|+.|+
T Consensus       125 ~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~  201 (293)
T d1p22a2         125 PTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR  201 (293)
T ss_dssp             SSCCEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEE
T ss_pred             cccccccccccccccccccceeccc---ccccccCCCceeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEE
Confidence            432  34556678899998888754   5668889999999999999998888765433 34555677899999999999


Q ss_pred             EEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC------CcceEEEeecCCCceEEEEEeCCC
Q 003842          663 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS------EGECVHELSCNGNKFHSCVFHPTY  735 (792)
Q Consensus       663 i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~------~~~~i~~~~~~~~~i~si~fspdg  735 (792)
                      +||+++...+..+.+|...|.+  +.+++.+|++++.| .|++||+....      ...++..+..|...|.+++|+  +
T Consensus       202 i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~  277 (293)
T d1p22a2         202 LWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--E  277 (293)
T ss_dssp             EEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--S
T ss_pred             EEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--C
Confidence            9999999999999999888875  45678899999999 99999985432      235678889999999999984  5


Q ss_pred             CEEEEEEcCCeEEEEE
Q 003842          736 PSLLVIGCYQSLELWN  751 (792)
Q Consensus       736 ~~L~sgs~dg~I~IwD  751 (792)
                      .+|++++.||+|+|||
T Consensus       278 ~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         278 FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCEEECCSSSEEEEEC
T ss_pred             CEEEEEecCCEEEEeC
Confidence            6899999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.3e-26  Score=246.09  Aligned_cols=241  Identities=13%  Similarity=0.175  Sum_probs=182.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCC--ceeEEeccC-CCCEEEEEECC--CCCeEEEEeCCCcEEEEeCCCC
Q 003842          513 SKVICCHFSSDGKLLATGGHDKK-AVLWHTDTL--KSKTNLEEH-SSLITDVRFSP--SMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~Dg~-I~vWdl~t~--~~~~~l~~h-~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      +.+++++|+|+|+.||+++.+.. |+.||....  ..+..+.+| ...|++++|+|  ++.+|++|+.||+|+|||+...
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            35789999999999999875543 455665433  446667777 46799999998  5679999999999999999752


Q ss_pred             Cce-------eEEecccCCCeEEEEEcCCCCeEEEEEe-CCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcC
Q 003842          587 GYS-------LRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       587 ~~~-------i~~~~~h~~~V~sl~fspd~~~ll~sgs-~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~d  658 (792)
                      ...       ...+..|.+.|.+++|++++..+++++. .++.+++                                  
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~----------------------------------  143 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF----------------------------------  143 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEE----------------------------------
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEE----------------------------------
Confidence            211       1234457778888888888766554332 2344444                                  


Q ss_pred             CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCE-EEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC-C
Q 003842          659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL-LASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT-Y  735 (792)
Q Consensus       659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~-Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspd-g  735 (792)
                           |+.++++++..+.+|...|.+++|++++.+ +++++.| .|++||+...+....+.....+...|.+++|+|+ +
T Consensus       144 -----~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~  218 (325)
T d1pgua1         144 -----ISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG  218 (325)
T ss_dssp             -----EETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred             -----EeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccc
Confidence                 444555566667789999999999998875 6778887 9999999766433333444566778999999997 6


Q ss_pred             CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe---CCCCEEEEEeCCCcEEEeC
Q 003842          736 PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS---TETGYVASASHDKFVKLWK  792 (792)
Q Consensus       736 ~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fs---pdg~~LaSgs~DG~I~IWd  792 (792)
                      .+|++++.|+.|++||+++++.+ .+.+|...|.++.|+   +|+++|++++.|+.|+|||
T Consensus       219 ~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd  279 (325)
T d1pgua1         219 EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD  279 (325)
T ss_dssp             CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEE
T ss_pred             eeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEE
Confidence            88999999999999999999887 666787777666555   7899999999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-25  Score=235.23  Aligned_cols=240  Identities=29%  Similarity=0.501  Sum_probs=195.2

Q ss_pred             EECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeC
Q 003842          539 WHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG  618 (792)
Q Consensus       539 Wdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~  618 (792)
                      |+..+.+....|++|.+.|.+ +++++|++||||+.||+|+|||+.+ ++++.++.+|...|.+++|+++   +|++|+.
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~h~~~V~~v~~~~~---~l~s~s~   75 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMRDN---IIISGST   75 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEEEEEEETT---EEEEEET
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCC-CCEEEEEeCCCCCEEEEEeCCC---cccccee
Confidence            566777888999999999865 3556789999999999999999987 7788999999999999999864   7889999


Q ss_pred             CCcEEEEEcCCCeeEEEeeC-----------------------------------------CeeEEEEecCCCEEEEEEc
Q 003842          619 DGEIRYWSINNGSCTRVFKG-----------------------------------------GTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       619 Dg~I~iwdl~~~~~~~~~~~-----------------------------------------~~~~v~~sp~~~~lla~s~  657 (792)
                      |+.+++|+............                                         ......+......+++++.
T Consensus        76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
T d2ovrb2          76 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY  155 (342)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred             cccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecC
Confidence            99999999876554322110                                         0111233445567888999


Q ss_pred             CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003842          658 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP  736 (792)
Q Consensus       658 dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~  736 (792)
                      |+.|++||.+..+.+..+.+|...+..+.  +++.+|++++.| .|++||++.+   .++..+..|...+.++++++  +
T Consensus       156 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~--~  228 (342)
T d2ovrb2         156 DFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELKD--N  228 (342)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEET--T
T ss_pred             CCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeecccc---eeeeEecccccceeEEecCC--C
Confidence            99999999999999999999887776655  468899999999 9999999876   67888888888888877765  5


Q ss_pred             EEEEEEcCCeEEEEECCCCcEE-EEc---ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          737 SLLVIGCYQSLELWNMSENKTM-TLT---AHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       737 ~L~sgs~dg~I~IwDl~~~~~~-~~~---~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +|++++.|+.|++||+...+.. .+.   .|...+.++.|+  +++|++|+.||.|+|||
T Consensus       229 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd  286 (342)
T d2ovrb2         229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD  286 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEE
Confidence            8999999999999999988766 333   355667776664  56999999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=8e-26  Score=237.09  Aligned_cols=248  Identities=13%  Similarity=0.111  Sum_probs=195.1

Q ss_pred             ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc--eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003842          545 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI  622 (792)
Q Consensus       545 ~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~--~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I  622 (792)
                      +.+....+|.+.|++|+|+|++++||+|+.||+|+|||++....  .+....+|...|.+++|++++..+|++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            45666779999999999999999999999999999999986443  2334447999999999999888899999999999


Q ss_pred             EEEEcCCCeeEEEeeC----CeeEEEEecCCCEEEEEEcCCeEEEEECCCCe----EEEEecCC--CCCeEEEEEcCCCC
Q 003842          623 RYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAAENVVSILDAETQA----CRLSLQGH--TKPIDSVCWDPSGE  692 (792)
Q Consensus       623 ~iwdl~~~~~~~~~~~----~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~----~~~~l~~h--~~~V~sv~~spdg~  692 (792)
                      ++|++...........    ......+.++...+++++.++.+++||++...    .......+  ......+.+.+++.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            9999998877665532    23445667788899999999999999986542    22333322  23455677788899


Q ss_pred             EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe-CCCCEEEEEEcCCeEEEEECCCCcEE------------
Q 003842          693 LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH-PTYPSLLVIGCYQSLELWNMSENKTM------------  758 (792)
Q Consensus       693 ~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fs-pdg~~L~sgs~dg~I~IwDl~~~~~~------------  758 (792)
                      .+++++.| .|++||+..................+.++.+. .++..+++++.||.+.+|++......            
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            99999988 99999998876655555555555566666555 46788999999999999998654211            


Q ss_pred             ----EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          759 ----TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       759 ----~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                          ....|...|++++|+|++++||+|+.||.|+|||
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD  279 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEE
Confidence                1234667899999999999999999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.8e-24  Score=237.12  Aligned_cols=242  Identities=17%  Similarity=0.186  Sum_probs=176.8

Q ss_pred             EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-----eeEEecccCCCeEEEE------EcCCCCeEEEEE
Q 003842          548 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-----SLRTFMGHSASVMSLD------FHPNKDDLICSC  616 (792)
Q Consensus       548 ~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~-----~i~~~~~h~~~V~sl~------fspd~~~ll~sg  616 (792)
                      ...++|...|.+|++++  ++|++++.|++|+|||..+...     .......|...+..+.      +......+++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            44578999999999875  6999999999999999865321     1223333444433332      222334577899


Q ss_pred             eCCCcEEEEEcCCCeeEEEe-------------eCCeeEEEEecCC-----CEEEEEEcCCeEEEEECCCC---------
Q 003842          617 DGDGEIRYWSINNGSCTRVF-------------KGGTAQMRFQPHL-----GRYLAAAAENVVSILDAETQ---------  669 (792)
Q Consensus       617 s~Dg~I~iwdl~~~~~~~~~-------------~~~~~~v~~sp~~-----~~lla~s~dg~I~i~D~~t~---------  669 (792)
                      +.||.|++|++........+             ......+++.++.     .++++++.|+.|++||+...         
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            99999999998654321111             1223456666553     56788889999999997421         


Q ss_pred             ------eE---EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce---EEEeecCCCceEEEEEeCCCC
Q 003842          670 ------AC---RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC---VHELSCNGNKFHSCVFHPTYP  736 (792)
Q Consensus       670 ------~~---~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~---i~~~~~~~~~i~si~fspdg~  736 (792)
                            ..   ......+...+.+++|+|++ +|++|+.| .|+|||+.+++....   ...+.+|...|.+++|+|+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  244 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  244 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence                  01   11122355678999999998 88999999 999999987633221   123456888999999999999


Q ss_pred             EEEEEEcCC---eEEEEECCCCcEE-EE-------------cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          737 SLLVIGCYQ---SLELWNMSENKTM-TL-------------TAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       737 ~L~sgs~dg---~I~IwDl~~~~~~-~~-------------~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +|++++.|+   .|++||+.+++.+ .+             .+|.+.|++|+|+||+++|+||+.||+|+|||
T Consensus       245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            999999987   5999999988766 22             37999999999999999999999999999996

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=1.4e-22  Score=210.67  Aligned_cols=257  Identities=12%  Similarity=0.131  Sum_probs=210.9

Q ss_pred             EEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEE-EEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEc
Q 003842          528 ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH  606 (792)
Q Consensus       528 asgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~La-sgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fs  606 (792)
                      ++++.|++|.|||+++++.+.++... ..+..++|+|||++|+ +++.++.|++||+.+ ...+..+..+. .+..++|+
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t-~~~~~~~~~~~-~~~~~~~~   82 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPAGS-SPQGVAVS   82 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEECSS-SEEEEEEC
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCC-Cceeeeeeccc-cccccccc
Confidence            45678999999999999999988754 4578999999999874 667889999999987 66777776654 57899999


Q ss_pred             CCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCCCeE
Q 003842          607 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPID  683 (792)
Q Consensus       607 pd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~~~V~  683 (792)
                      +++..+++++..++.+++|+..+++....+..  ....+.+++++..+++++. ++.+.+|+..+.+.+..+..+ ..+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  161 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPK  161 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEE
T ss_pred             cccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCce
Confidence            99999998999999999999999998887654  4567899999998876665 778999999999988887754 4578


Q ss_pred             EEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEE
Q 003842          684 SVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTM  758 (792)
Q Consensus       684 sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d---g~I~IwDl~~~~~~  758 (792)
                      +++|++++.++++++.+  .+.+|+....   .....+. ....+..++|++++..+++++.+   +.|++||+.+++.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~  237 (301)
T d1l0qa2         162 GIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             EEEeeccccceeeecccccccccccccce---eeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEE
Confidence            89999999988888766  6778887654   3333333 34567889999999998877654   58999999999988


Q ss_pred             EEcccCCCeEEEEEeCCCCEE-EEEeCCCcEEEeC
Q 003842          759 TLTAHEGLIAALAVSTETGYV-ASASHDKFVKLWK  792 (792)
Q Consensus       759 ~~~~h~~~V~sl~fspdg~~L-aSgs~DG~I~IWd  792 (792)
                      ....+...+.+++|+|||++| ++++.|+.|+|||
T Consensus       238 ~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D  272 (301)
T d1l0qa2         238 ARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVID  272 (301)
T ss_dssp             EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            655556678999999999987 5677799999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=2.4e-23  Score=231.03  Aligned_cols=286  Identities=12%  Similarity=0.071  Sum_probs=203.9

Q ss_pred             eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe-----ccCCCCEEEEEECCCCCeEEEE-eCCCcE
Q 003842          505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-----EEHSSLITDVRFSPSMPRLATS-SFDKTV  578 (792)
Q Consensus       505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l-----~~h~~~V~~i~fspdg~~Lasg-s~Dg~V  578 (792)
                      +.++..|. .+..++|||||++|++++.|++|++||+.+++.....     .+|...+.+++|+|||++|+++ ..++.|
T Consensus        55 ~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v  133 (426)
T d1hzua2          55 VKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQF  133 (426)
T ss_dssp             EEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEE
T ss_pred             EEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeE
Confidence            34455553 5899999999999999999999999999988754432     2566777888889999987554 588999


Q ss_pred             EEEeCCCCCceeEEecccCC-----------CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE--Ee--eCCeeEE
Q 003842          579 RVWDADNPGYSLRTFMGHSA-----------SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VF--KGGTAQM  643 (792)
Q Consensus       579 ~IWdl~s~~~~i~~~~~h~~-----------~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~--~~--~~~~~~v  643 (792)
                      ++||..+ ..++..+..|..           ....+.+++++..++++....+.+.+++........  .+  ......+
T Consensus       134 ~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  212 (426)
T d1hzua2         134 AIMDGET-LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG  212 (426)
T ss_dssp             EEEETTT-CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEE
T ss_pred             EEEcCCc-cceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEee
Confidence            9999997 555655554433           345566666666666555556666666665544322  12  2345678


Q ss_pred             EEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCC--EEEEE-eCC-eEEEEECCCCC----C
Q 003842          644 RFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGE--LLASV-SED-SVRVWTVGSGS----E  712 (792)
Q Consensus       644 ~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~--h~~~V~sv~~spdg~--~Las~-s~d-~I~IwDl~s~~----~  712 (792)
                      .|++++.+++++.. +..+.++|..+++.+..+..  +......+.+...+.  .++.. +.+ .+.+|+.....    .
T Consensus       213 ~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~  292 (426)
T d1hzua2         213 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA  292 (426)
T ss_dssp             EECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTB
T ss_pred             eECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccccc
Confidence            99999999888776 56899999999988877653  222333444443333  22222 234 78888875532    2


Q ss_pred             cceEEEeecCCCceEEEEEeCCCCEEEE-------EEcCCeEEEEECCCCcEE-E---------EcccCCCeEEEEEeCC
Q 003842          713 GECVHELSCNGNKFHSCVFHPTYPSLLV-------IGCYQSLELWNMSENKTM-T---------LTAHEGLIAALAVSTE  775 (792)
Q Consensus       713 ~~~i~~~~~~~~~i~si~fspdg~~L~s-------gs~dg~I~IwDl~~~~~~-~---------~~~h~~~V~sl~fspd  775 (792)
                      .+....+.+|...+..++|+|++++|++       +..+++|+|||+.+++.. +         +..|...|..++|+||
T Consensus       293 ~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpD  372 (426)
T d1hzua2         293 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR  372 (426)
T ss_dssp             TSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSS
T ss_pred             ceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCC
Confidence            3677888999999999999999999996       345679999999988654 2         2346677999999999


Q ss_pred             CCEEEEE-----eCCCcEEEeC
Q 003842          776 TGYVASA-----SHDKFVKLWK  792 (792)
Q Consensus       776 g~~LaSg-----s~DG~I~IWd  792 (792)
                      |++|+.+     +.||.|+|||
T Consensus       373 Gk~i~vs~~~~~~~~~~i~v~D  394 (426)
T d1hzua2         373 GDEVWFSVWNGKNDSSALVVVD  394 (426)
T ss_dssp             SSEEEEEECCCTTSCCEEEEEE
T ss_pred             CCEEEEEEecCCCCCCeEEEEE
Confidence            9977443     3578899996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.1e-22  Score=211.34  Aligned_cols=244  Identities=10%  Similarity=0.134  Sum_probs=190.8

Q ss_pred             CCCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECC
Q 003842          485 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP  564 (792)
Q Consensus       485 ~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp  564 (792)
                      +..|+.+++|++..+        ..+|...|.+++|++++ .+++++.|++|++|++...+       ....+.++.+.+
T Consensus        27 gs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~   90 (287)
T d1pgua2          27 GSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE-------FGSQPKVASANN   90 (287)
T ss_dssp             EETTSCEEETTTTEE--------ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE-------CSSCEEEEEECS
T ss_pred             EeCCCeEEEEECCCC--------CCCCCCCEEEEEecCCC-eEEEEeeccccccccccccc-------cccceeeeeecc
Confidence            345667777876542        46899999999999765 67899999999999875422       345678889998


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----eCCe
Q 003842          565 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGT  640 (792)
Q Consensus       565 dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~  640 (792)
                      ++..++++ .++.+.+|+..+ +..+..+.. ...+  .++++++..+++++..++.|++|++........+    ...+
T Consensus        91 ~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~-~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v  165 (287)
T d1pgua2          91 DGFTAVLT-NDDDLLILQSFT-GDIIKSVRL-NSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP  165 (287)
T ss_dssp             SSEEEEEE-TTSEEEEEETTT-CCEEEEEEC-SSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred             CCceEEEe-ecccceeeeccc-eeeeeeccc-ccee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCce
Confidence            88666655 555688999887 555665543 3344  4455666666655555568999999876655543    3457


Q ss_pred             eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE-EecCCCCCeEEEEEcCC----------CCEEEEEeCC-eEEEEECC
Q 003842          641 AQMRFQPHLGRYLAAAAENVVSILDAETQACRL-SLQGHTKPIDSVCWDPS----------GELLASVSED-SVRVWTVG  708 (792)
Q Consensus       641 ~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~-~l~~h~~~V~sv~~spd----------g~~Las~s~d-~I~IwDl~  708 (792)
                      .+++|+|++.+|++++.||.|++||+.++..+. .+..|...|.+++|+|.          +.+|++++.| .|+|||++
T Consensus       166 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         166 SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             eEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence            889999999999999999999999999987765 46779999999999874          4689999999 99999997


Q ss_pred             CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003842          709 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM  752 (792)
Q Consensus       709 s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl  752 (792)
                      ++  ...+..+.+|...|.+++|++++ .|++++.|+.|++||+
T Consensus       246 ~~--~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         246 RP--MKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CT--TCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CC--CeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            64  25677788899999999999986 5899999999999996

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=1.8e-23  Score=233.19  Aligned_cols=282  Identities=11%  Similarity=0.047  Sum_probs=198.5

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--EEe---ccCCCCEEEEEECCCCCeE-EEEeCCCcEE
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNL---EEHSSLITDVRFSPSMPRL-ATSSFDKTVR  579 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~--~~l---~~h~~~V~~i~fspdg~~L-asgs~Dg~V~  579 (792)
                      ..+..|. .+..++|||||++|++++.|+.|++||+.+++..  ..+   ..|.+.+.+..|+|||++| ++++.++.|+
T Consensus        56 ~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~  134 (432)
T d1qksa2          56 TVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYV  134 (432)
T ss_dssp             EEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred             EEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEE
Confidence            3444453 5999999999999999999999999999887643  233   3566677777888999976 6788899999


Q ss_pred             EEeCCCCCceeEEecc-----------cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE--ee--CCeeEEE
Q 003842          580 VWDADNPGYSLRTFMG-----------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FK--GGTAQMR  644 (792)
Q Consensus       580 IWdl~s~~~~i~~~~~-----------h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~~--~~~~~v~  644 (792)
                      |||..+ +..+..+..           +......+.+++++..++++...++.|.+||..+.+....  +.  .....+.
T Consensus       135 i~d~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~  213 (432)
T d1qksa2         135 IMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG  213 (432)
T ss_dssp             EEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEE
T ss_pred             EEeCcc-ccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccce
Confidence            999997 555555543           3456778999999999888999999999999988765443  33  3456799


Q ss_pred             EecCCCEEEEEEc-CCeEEEEECCCCeEEEEecC-----CCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCCC----
Q 003842          645 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-----HTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSE----  712 (792)
Q Consensus       645 ~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~-----h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s~~~----  712 (792)
                      |+|++.++++++. ++.|.++|.++.+.+..+..     |........+...+.+.++... + .|.+|+......    
T Consensus       214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~  293 (432)
T d1qksa2         214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNA  293 (432)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred             ECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccc
Confidence            9999999888876 56899999999888776543     3344455555555556655553 3 788888654321    


Q ss_pred             cceEEEeecCCCceE-------------------------EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCe
Q 003842          713 GECVHELSCNGNKFH-------------------------SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLI  767 (792)
Q Consensus       713 ~~~i~~~~~~~~~i~-------------------------si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V  767 (792)
                      .+....+..+.....                         ++++ ||++.|++++.|+.+++||+.++.  .+..|...|
T Consensus       294 ~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~--~l~~~~~~v  370 (432)
T d1qksa2         294 WKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWA--GITEGQPRV  370 (432)
T ss_dssp             TSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHH--TCCSSCCEE
T ss_pred             cEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEeccccccc--ccCCCCCcE
Confidence            122222222211111                         1222 556666666666677777664432  223577789


Q ss_pred             EEEEEeCCCCEEEEEe-----CCCcEEEeC
Q 003842          768 AALAVSTETGYVASAS-----HDKFVKLWK  792 (792)
Q Consensus       768 ~sl~fspdg~~LaSgs-----~DG~I~IWd  792 (792)
                      .+++|+|||++|+.+.     .||.|+|||
T Consensus       371 ~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D  400 (432)
T d1qksa2         371 VQGEFNKDGTEVWFSVWNGKDQESALVVVD  400 (432)
T ss_dssp             EEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             EEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence            9999999999886554     468899997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=7.3e-23  Score=218.21  Aligned_cols=269  Identities=11%  Similarity=0.004  Sum_probs=207.3

Q ss_pred             EEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC--cEEEEeCCCCCceeEEe
Q 003842          517 CCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTF  593 (792)
Q Consensus       517 ~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg--~V~IWdl~s~~~~i~~~  593 (792)
                      .-.||| ||+++|+++ +|.|+|||++++..+..  .|...|.+++|+|||++|++++.+.  .|++||+++  ..+..+
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~--~~~~~~   81 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--GKAEKF   81 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT--CCEEEC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC--CcEEEe
Confidence            457999 999999987 57999999988876653  6899999999999999998877654  799999986  345677


Q ss_pred             cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEc----------CCe
Q 003842          594 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA----------ENV  660 (792)
Q Consensus       594 ~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~----------dg~  660 (792)
                      ..|...|.+++|+|+++ +|++++.++.+++|++.++++...+..   ...+++|+|++.+|+++..          ++.
T Consensus        82 ~~~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~  160 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA  160 (360)
T ss_dssp             CCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred             eCCCceEEeeeeccccc-ccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccc
Confidence            88999999999999987 455888999999999999988777653   4577999999999887653          346


Q ss_pred             EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC----cceEEEeecCCCceEEEEEeCCC
Q 003842          661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE----GECVHELSCNGNKFHSCVFHPTY  735 (792)
Q Consensus       661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~----~~~i~~~~~~~~~i~si~fspdg  735 (792)
                      +++||+.+++.... ..+...+.+++|+|+|++|++++.+ .+++||......    ......+..+...+..+.|++++
T Consensus       161 ~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  239 (360)
T d1k32a3         161 IHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS  239 (360)
T ss_dssp             EEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGG
T ss_pred             eeeeccccCceeee-cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCc
Confidence            89999998876544 4467788999999999999999988 899999765321    12333344445555556677777


Q ss_pred             CEEEEEEcCC-----eEEEEECCCCcEEEEcccCCCeEEEEEeCCCC---EEEEEeCCCcEEEeC
Q 003842          736 PSLLVIGCYQ-----SLELWNMSENKTMTLTAHEGLIAALAVSTETG---YVASASHDKFVKLWK  792 (792)
Q Consensus       736 ~~L~sgs~dg-----~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~---~LaSgs~DG~I~IWd  792 (792)
                      ..++++..+.     .+..+++..+....+..+.+.+..+.+...+.   ++++++.|+.|++||
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  304 (360)
T d1k32a3         240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD  304 (360)
T ss_dssp             GSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEE
T ss_pred             CcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEE
Confidence            6666554432     35556666777666667777777777665543   678888899999996

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=4.1e-21  Score=202.15  Aligned_cols=260  Identities=11%  Similarity=0.095  Sum_probs=200.4

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEecc--CCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCCCCCceeEEecccC----
Q 003842          525 KLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHS----  597 (792)
Q Consensus       525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~--h~~~V~~i~fspdg~~L-asgs~Dg~V~IWdl~s~~~~i~~~~~h~----  597 (792)
                      +||++++.|++|+|||+++++.+.++..  +...+.+++|+|||++| ++++.++.|++||+.+ ++.+..+..+.    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t-~~~~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC-CcEEEEEecCCCccc
Confidence            4899999999999999999999998864  44568899999999987 5667899999999998 66666665443    


Q ss_pred             -CCeEEEEEcCCCCeEEEEEe-----------CCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEcCCeEEE
Q 003842          598 -ASVMSLDFHPNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSI  663 (792)
Q Consensus       598 -~~V~sl~fspd~~~ll~sgs-----------~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~dg~I~i  663 (792)
                       ..+..++|+|+++.+++++.           .+..+.+||..+++....+..  ....++|++++.++++++  +.+.+
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~  158 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHV  158 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEE
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc--CCcce
Confidence             33457899999987765543           467899999999998887753  456799999999998875  45778


Q ss_pred             EECCCCeEEEEecCCCCCeEEEEEcCCCCEE------------------------EEEeCC-eEEEEECCCCCCcceEEE
Q 003842          664 LDAETQACRLSLQGHTKPIDSVCWDPSGELL------------------------ASVSED-SVRVWTVGSGSEGECVHE  718 (792)
Q Consensus       664 ~D~~t~~~~~~l~~h~~~V~sv~~spdg~~L------------------------as~s~d-~I~IwDl~s~~~~~~i~~  718 (792)
                      ||..+++....+..+... ....+.+++..+                        .....+ .+.+||+.++.  .....
T Consensus       159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  235 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMRE  235 (337)
T ss_dssp             EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEEEE
T ss_pred             eeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc--EEEEE
Confidence            999999888877654322 111122222111                        111122 58888887663  23344


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          719 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       719 ~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      +..+...+..+.+++++.+++++  ++.|++||+.+++.+....+...+.+++|+|||++|++++.||.|+|||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             ecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            55667778889999999988766  4799999999999997777888899999999999999999999999997

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=3.5e-20  Score=192.16  Aligned_cols=260  Identities=15%  Similarity=0.188  Sum_probs=205.4

Q ss_pred             CCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCC
Q 003842          488 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM  566 (792)
Q Consensus       488 d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~La-sgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg  566 (792)
                      +..+.+||+.++   +.++++... ..+..++|+|||++|+ +++.++.|++||+.+++.+..+..+. .+..++|++++
T Consensus        11 ~~~v~v~D~~t~---~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~   85 (301)
T d1l0qa2          11 SDNISVIDVTSN---KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDG   85 (301)
T ss_dssp             TTEEEEEETTTT---EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS
T ss_pred             CCEEEEEECCCC---eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccccc
Confidence            345667777665   455555543 4578999999999875 56678999999999999999988765 46899999999


Q ss_pred             CeEE-EEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--CeeEE
Q 003842          567 PRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQM  643 (792)
Q Consensus       567 ~~La-sgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v  643 (792)
                      .+++ ++..++.+++|+..+ +.....+. +...+.+++|+|++..+++++..++.+.+|+..+...+..+..  ....+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (301)
T d1l0qa2          86 KQVYVTNMASSTLSVIDTTS-NTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGI  163 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEE
T ss_pred             ccccccccccceeeeccccc-ceeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEE
Confidence            8655 456677899999987 55555555 4556789999999999998999999999999999998887654  45778


Q ss_pred             EEecCCCEEEEEEcC-CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEE
Q 003842          644 RFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHE  718 (792)
Q Consensus       644 ~~sp~~~~lla~s~d-g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~  718 (792)
                      .+++++..+++++.+ +.+.+|+....+....+..+ ..+..++|++++..+++++.+    .|++||+.++   +.+..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~---~~~~~  239 (301)
T d1l0qa2         164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITAR  239 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEEE
T ss_pred             Eeeccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCC---eEEEE
Confidence            999999998888875 67888888888777766643 557789999999977655422    6999999876   55655


Q ss_pred             eecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCcEEE
Q 003842          719 LSCNGNKFHSCVFHPTYPSLL-VIGCYQSLELWNMSENKTMT  759 (792)
Q Consensus       719 ~~~~~~~i~si~fspdg~~L~-sgs~dg~I~IwDl~~~~~~~  759 (792)
                      +.. ...+..++|+|||++|+ +++.++.|++||+.+++++.
T Consensus       240 ~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~  280 (301)
T d1l0qa2         240 IPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA  280 (301)
T ss_dssp             EEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence            554 45679999999999875 55568999999999998773

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=5.5e-22  Score=209.76  Aligned_cols=267  Identities=9%  Similarity=0.020  Sum_probs=198.2

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCCCCCceeEEecc
Q 003842          518 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMG  595 (792)
Q Consensus       518 lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspdg~~L-asgs~Dg~V~IWdl~s~~~~i~~~~~  595 (792)
                      ++|+++++||++++.|+.|.|||+++++.+.++. .|...+.+++|+|||++| ++++.++.|++||+.+ ++.+..+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t-~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc-Ceeeeeecc
Confidence            4789999999999999999999999999999887 456778999999999987 4556789999999998 555555442


Q ss_pred             cC------CCeEEEEEcCCCCeEEEEE-----------eCCCcEEEEEcCCCeeEEEee-----CCeeEEEEecCCCEEE
Q 003842          596 HS------ASVMSLDFHPNKDDLICSC-----------DGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYL  653 (792)
Q Consensus       596 h~------~~V~sl~fspd~~~ll~sg-----------s~Dg~I~iwdl~~~~~~~~~~-----~~~~~v~~sp~~~~ll  653 (792)
                      ..      ..+..++|+|||+.++++.           ..++.+.+||..+++....+.     .....+.+.+++ +++
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  159 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG-SLY  159 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS-CEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC-EEE
Confidence            22      2456799999998776554           247889999998876554322     223345555554 444


Q ss_pred             EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEE--------------------------EEEeCC-eEEEEE
Q 003842          654 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL--------------------------ASVSED-SVRVWT  706 (792)
Q Consensus       654 a~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~L--------------------------as~s~d-~I~IwD  706 (792)
                      +.  ++.+.+||+.+++.+..+..+.. ...+.++|++..+                          +++..+ .+.+||
T Consensus       160 ~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
T d1jmxb_         160 VA--GPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  236 (346)
T ss_dssp             EE--SSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             Ee--CCcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence            43  35689999999988888765432 3334445544332                          222223 577788


Q ss_pred             CCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 003842          707 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK  786 (792)
Q Consensus       707 l~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG  786 (792)
                      +.++.  ........+...+..+.+++++.++++... +.|++||+.+++.+....+...+.+++|+|||++|++++.||
T Consensus       237 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~  313 (346)
T d1jmxb_         237 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN  313 (346)
T ss_dssp             TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSS
T ss_pred             CCCCc--eEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            76652  233445567778889999999888776654 589999999999886666777899999999999999999999


Q ss_pred             cEEEeC
Q 003842          787 FVKLWK  792 (792)
Q Consensus       787 ~I~IWd  792 (792)
                      .|+|||
T Consensus       314 ~v~v~D  319 (346)
T d1jmxb_         314 DLAVFN  319 (346)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=2e-20  Score=207.24  Aligned_cols=263  Identities=11%  Similarity=0.015  Sum_probs=192.0

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCce----eEEecccCCCeE
Q 003842          526 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS----LRTFMGHSASVM  601 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~----i~~~~~h~~~V~  601 (792)
                      ++++.+.||+|+|||+.+++.+.++..|. .+..|+|+|||++|++++.|++|++||+.+....    +....+|...+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            56778889999999999999999999774 5999999999999999999999999999874422    222335667778


Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC--------------eeEEEEecCCCEEEEEEc-CCeEEEEEC
Q 003842          602 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--------------TAQMRFQPHLGRYLAAAA-ENVVSILDA  666 (792)
Q Consensus       602 sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~--------------~~~v~~sp~~~~lla~s~-dg~I~i~D~  666 (792)
                      +++|+|||+++++++..++.+++||..++.++..+..+              ...+.+++++..++.... .+.+.+++.
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~  192 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  192 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence            88899999998888889999999999999887765432              223455666666555544 355666666


Q ss_pred             CCCeE-EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecC--CCceEEEEEeCCCC-EEEE
Q 003842          667 ETQAC-RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYP-SLLV  740 (792)
Q Consensus       667 ~t~~~-~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~--~~~i~si~fspdg~-~L~s  740 (792)
                      ..... ......+...+..+.|+|++++++++..+  .+.+|+..++   ..+......  ........+...+. .+++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (426)
T d1hzua2         193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANFVHPKYGPVWS  269 (426)
T ss_dssp             SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT---EEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred             ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc---cEEEEeccCCcccccceeeeecCCCCceEE
Confidence            55432 22334567788999999999998888766  8999999876   444333322  22223333333332 2222


Q ss_pred             --EEcCCeEEEEECCCC-------cEE-EEcccCCCeEEEEEeCCCCEEEE-------EeCCCcEEEeC
Q 003842          741 --IGCYQSLELWNMSEN-------KTM-TLTAHEGLIAALAVSTETGYVAS-------ASHDKFVKLWK  792 (792)
Q Consensus       741 --gs~dg~I~IwDl~~~-------~~~-~~~~h~~~V~sl~fspdg~~LaS-------gs~DG~I~IWd  792 (792)
                        ...++.+.+|+....       +.. .+.+|...+..++|+||+++|++       ++.|++|+|||
T Consensus       270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd  338 (426)
T d1hzua2         270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  338 (426)
T ss_dssp             EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred             eccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEE
Confidence              234678888876543       333 78899999999999999999994       55689999996

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=9.1e-20  Score=202.86  Aligned_cols=225  Identities=12%  Similarity=-0.033  Sum_probs=166.6

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCce-e---EEecccCCCeE
Q 003842          526 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS-L---RTFMGHSASVM  601 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~-i---~~~~~h~~~V~  601 (792)
                      ++++.+.||+|.|||.++++++..+..+ ..+..++|+|||++|++++.|+.|++||+.+.... +   ....+|.+.+.
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            5688889999999999999999999877 46999999999999999999999999999874432 2   22345666777


Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--------------CeeEEEEecCCCEEEEEEc-CCeEEEEEC
Q 003842          602 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------------GTAQMRFQPHLGRYLAAAA-ENVVSILDA  666 (792)
Q Consensus       602 sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------------~~~~v~~sp~~~~lla~s~-dg~I~i~D~  666 (792)
                      +..|+|||++++++++.++.|++||..+++++..+..              ....+.+++++..++++.. ++.|.+||.
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~  192 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY  192 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred             ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence            7788999999999999999999999999998877643              2334778999888766554 789999999


Q ss_pred             CCCeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeec-----CCCceEEEEEeCCCCEE
Q 003842          667 ETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC-----NGNKFHSCVFHPTYPSL  738 (792)
Q Consensus       667 ~t~~~~~~l~-~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~-----~~~~i~si~fspdg~~L  738 (792)
                      .+.+...... .+...+.+++|+|+|+++++++.+  .+.+||..+.   +.+..+..     +........+...+...
T Consensus       193 ~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~  269 (432)
T d1qksa2         193 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGANFVHPTFGPVW  269 (432)
T ss_dssp             TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred             cCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc---eEEEEeccCccccccCcccceecCCCCcee
Confidence            8876544332 355678899999999988888766  8999998765   33333221     22223333443333333


Q ss_pred             EEEE-cCCeEEEEECCC
Q 003842          739 LVIG-CYQSLELWNMSE  754 (792)
Q Consensus       739 ~sgs-~dg~I~IwDl~~  754 (792)
                      ++.. .++.|.+|+...
T Consensus       270 ~~~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         270 ATSHMGDDSVALIGTDP  286 (432)
T ss_dssp             EEEBSSSSEEEEEECCT
T ss_pred             cccccCCceEEeccccc
Confidence            3332 255677776544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=1.3e-19  Score=190.36  Aligned_cols=237  Identities=12%  Similarity=0.103  Sum_probs=178.0

Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeEEeccCCC-----CEEEEEECCCCCeEEEEe------------
Q 003842          512 TSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPRLATSS------------  573 (792)
Q Consensus       512 ~~~V~~lafspdg~~La-sgs~Dg~I~vWdl~t~~~~~~l~~h~~-----~V~~i~fspdg~~Lasgs------------  573 (792)
                      ...+.+++|+|||++|+ +++.++.|++||+.+++.+..+..+..     .+..++|+|+++++++++            
T Consensus        33 ~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T d1pbyb_          33 GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccc
Confidence            34578899999999875 567899999999999999988876543     345789999999998876            


Q ss_pred             CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe--eEEEEecCC--
Q 003842          574 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT--AQMRFQPHL--  649 (792)
Q Consensus       574 ~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~--~~v~~sp~~--  649 (792)
                      .+..+.+||..+ ......+. +...+.+++|++++..++ +++  +.+.+||..+++....+....  ....+.+++  
T Consensus       113 ~~~~~~~~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l~-~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (337)
T d1pbyb_         113 QPTRVALYDAET-LSRRKAFE-APRQITMLAWARDGSKLY-GLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA  187 (337)
T ss_dssp             CCCEEEEEETTT-TEEEEEEE-CCSSCCCEEECTTSSCEE-EES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCC
T ss_pred             cccceeeccccC-CeEEEecc-ccCCceEEEEcCCCCEEE-EEc--CCcceeeeecCcEEEEeecCCccccceecCCcce
Confidence            357789999987 55555555 456688999999998776 443  558899999998877654311  111111111  


Q ss_pred             --------C--------------EEEEEEcCCeEEEEECCCCeEEE-EecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEE
Q 003842          650 --------G--------------RYLAAAAENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWT  706 (792)
Q Consensus       650 --------~--------------~lla~s~dg~I~i~D~~t~~~~~-~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwD  706 (792)
                              .              .+.....++.+.+||..++.... .+..+...+.++.+++++.+++++. +.|++||
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~d  266 (337)
T d1pbyb_         188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-NVLESFD  266 (337)
T ss_dssp             CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-SEEEEEE
T ss_pred             eeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc-ccEEEEE
Confidence                    1              11111224568999999887654 3555778889999999999987663 5899999


Q ss_pred             CCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          707 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       707 l~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      +.++   +.+..+. +...+.+++|+|||++|++++.++.|+|||..+.+.+
T Consensus       267 ~~~~---~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         267 LEKN---ASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             TTTT---EEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCC---cEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            9876   5565554 4567889999999999999999999999999999877

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=1.9e-18  Score=185.85  Aligned_cols=280  Identities=10%  Similarity=0.035  Sum_probs=203.2

Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe---------
Q 003842          508 VRASTSKVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS---------  573 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs-----~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs---------  573 (792)
                      ...+..++.+++++|||+.+++..     .++.|++||.++++.+.++..+...  .++|+|||++|++++         
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence            346788999999999999987752     3467999999999999998766543  799999999998875         


Q ss_pred             -CCCcEEEEeCCCCCceeEEecccCCCe-------EEEEEcCCCCeEEEEE-eCCCcEEEEEcCCCeeEEEeeCCeeEEE
Q 003842          574 -FDKTVRVWDADNPGYSLRTFMGHSASV-------MSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGGTAQMR  644 (792)
Q Consensus       574 -~Dg~V~IWdl~s~~~~i~~~~~h~~~V-------~sl~fspd~~~ll~sg-s~Dg~I~iwdl~~~~~~~~~~~~~~~v~  644 (792)
                       .++.|.|||+.+ ++.+..+..+....       ..+.|+++++.+++.. ..++.+.+|+....+....... ..++.
T Consensus        94 ~~~~~v~v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  171 (373)
T d2madh_          94 KRTDYVEVFDPVT-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS-PTCYH  171 (373)
T ss_pred             ccceEEEEEECCC-CcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEecc-ceeEE
Confidence             357899999998 56666665554433       4578888887765443 4567899999988776655543 45678


Q ss_pred             EecCCCEE-EEEEcCCeEEEEECCCCeEEEEecCC------CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEE
Q 003842          645 FQPHLGRY-LAAAAENVVSILDAETQACRLSLQGH------TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH  717 (792)
Q Consensus       645 ~sp~~~~l-la~s~dg~I~i~D~~t~~~~~~l~~h------~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~  717 (792)
                      +++++..+ ++.+.|+.+.+||...++.......+      ......+.+++++.+++....+.+++|+...... ..+.
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~  250 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKA  250 (373)
T ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeE-EEEE
Confidence            89998766 46677999999999988776655432      1223455666777666655555899999876421 1111


Q ss_pred             Eeec----------CCCceEEEEEeCCCCEEE----------EEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC
Q 003842          718 ELSC----------NGNKFHSCVFHPTYPSLL----------VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETG  777 (792)
Q Consensus       718 ~~~~----------~~~~i~si~fspdg~~L~----------sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~  777 (792)
                      .+..          .......+++++++..++          +...++.|.+||..+++.+....+...+.+++|+|||+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~  330 (373)
T d2madh_         251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGG  330 (373)
T ss_pred             eeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCC
Confidence            1111          112234456666666544          34556689999999999987777888899999999998


Q ss_pred             E--EEEEeCCCcEEEeC
Q 003842          778 Y--VASASHDKFVKLWK  792 (792)
Q Consensus       778 ~--LaSgs~DG~I~IWd  792 (792)
                      .  +++++.|+.|+|||
T Consensus       331 ~~l~vt~~~d~~v~v~D  347 (373)
T d2madh_         331 PDLYALSAGTEVLHIYD  347 (373)
T ss_pred             EEEEEEeCCCCeEEEEE
Confidence            4  46788999999997

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=4.2e-18  Score=179.19  Aligned_cols=267  Identities=12%  Similarity=0.178  Sum_probs=190.6

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEe--ccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCceeE--EecccCCCe
Q 003842          526 LLATGGHDKKAVLWHTDTLKSKTNL--EEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLR--TFMGHSASV  600 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~~~~~l--~~h~~~V~~i~fspdg~~Lasgs-~Dg~V~IWdl~s~~~~i~--~~~~h~~~V  600 (792)
                      .+++++.|++|+||++++...+..+  ..|.+.|.+|+|+|||++|++++ .|+.|++|+++.......  ....+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            4567779999999999765443333  36788999999999999986655 589999999986443322  223345567


Q ss_pred             EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----CCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEE-
Q 003842          601 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRL-  673 (792)
Q Consensus       601 ~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~-  673 (792)
                      ..++|+||++++++++..++.|.+|+...........     .....+.+++++.++++++. +..|.+|+........ 
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            7899999999888777778899999988776554432     34567899999999888876 5689999987653221 


Q ss_pred             -----EecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCc-ceEEEee------cCCCceEEEEEeCCCCEEE
Q 003842          674 -----SLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEG-ECVHELS------CNGNKFHSCVFHPTYPSLL  739 (792)
Q Consensus       674 -----~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~-~~i~~~~------~~~~~i~si~fspdg~~L~  739 (792)
                           ...........++|++++.+++.....  ...+|++...... .....+.      ........+++++++++++
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~  245 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  245 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence                 122244567889999999988877655  7888887543221 1222221      1234467789999999877


Q ss_pred             EEEc-CCeEEEEECCCCcEE----EEcccCCCeEEEEEeCCCCEEEEEeC-CCcEEEeC
Q 003842          740 VIGC-YQSLELWNMSENKTM----TLTAHEGLIAALAVSTETGYVASASH-DKFVKLWK  792 (792)
Q Consensus       740 sgs~-dg~I~IwDl~~~~~~----~~~~h~~~V~sl~fspdg~~LaSgs~-DG~I~IWd  792 (792)
                      +... ++.+.+|++......    ....+...+.+++|+|||++|++++. ++.|+||+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~  304 (333)
T d1ri6a_         246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE  304 (333)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            7665 568999988654322    23345567889999999999877764 68899984

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=2.9e-19  Score=188.57  Aligned_cols=270  Identities=10%  Similarity=0.033  Sum_probs=193.2

Q ss_pred             EEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeeeee-
Q 003842          434 MFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVR-  509 (792)
Q Consensus       434 ~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~l~-  509 (792)
                      .|+++++++++++..   .+||+++++++.                                              ++. 
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~----------------------------------------------t~~~   36 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYK----------------------------------------------SCVM   36 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEE----------------------------------------------EEEC
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEE----------------------------------------------EEEc
Confidence            467788888875443   789988876543                                              222 


Q ss_pred             cCCCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCceeEEeccCC------CCEEEEEECCCCCeEEEEe---------
Q 003842          510 ASTSKVICCHFSSDGKLLAT-GGHDKKAVLWHTDTLKSKTNLEEHS------SLITDVRFSPSMPRLATSS---------  573 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Las-gs~Dg~I~vWdl~t~~~~~~l~~h~------~~V~~i~fspdg~~Lasgs---------  573 (792)
                      .|...+.+++|+|||++|++ +..++.|++||+.+++.+..+....      ..+..++|+|||++|++++         
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~  116 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH  116 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeee
Confidence            23445789999999998754 5578999999999999888775432      2356799999999988775         


Q ss_pred             ---CCCcEEEEeCCCCCceeEEec--ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC--eeEEEEe
Q 003842          574 ---FDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--TAQMRFQ  646 (792)
Q Consensus       574 ---~Dg~V~IWdl~s~~~~i~~~~--~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~--~~~v~~s  646 (792)
                         .++.+.+||..+. .....+.  .....+..+.+.+++. ++++   ++.+.+|++.+++.+..+..+  ...+.++
T Consensus       117 ~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (346)
T d1jmxb_         117 YVVKPPRLEVFSTADG-LEAKPVRTFPMPRQVYLMRAADDGS-LYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSA  191 (346)
T ss_dssp             EEECCCEEEEEEGGGG-GGBCCSEEEECCSSCCCEEECTTSC-EEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCC
T ss_pred             eccCcceEEEEecccc-eeeeEEEeeeccCceEEEEecCCCE-EEEe---CCcceEEEccCCCEEEEEecCCCccceEEe
Confidence               4677889988763 2222221  1233455666666654 4433   456999999998888776422  1222233


Q ss_pred             cCCCE--------------------------EEEEEcCCeEEEEECCCCeEEE-EecCCCCCeEEEEEcCCCCEEEEEeC
Q 003842          647 PHLGR--------------------------YLAAAAENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSE  699 (792)
Q Consensus       647 p~~~~--------------------------lla~s~dg~I~i~D~~t~~~~~-~l~~h~~~V~sv~~spdg~~Las~s~  699 (792)
                      |++..                          +..+..+..+.+||..++.... .+..+...+.++.+++++.++++...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (346)
T d1jmxb_         192 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL  271 (346)
T ss_dssp             CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE
T ss_pred             ccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC
Confidence            33221                          2223335578889998886554 44567888999999999999988888


Q ss_pred             CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003842          700 DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM  758 (792)
Q Consensus       700 d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~  758 (792)
                      +.|++||+.++   +.+..+. ....+.+++|+|||++|++++.++.|+|||+.+++.+
T Consensus       272 ~~v~v~d~~~~---~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         272 NRLAKYDLKQR---KLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             SEEEEEETTTT---EEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             CeEEEEECCCC---cEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence            89999999876   5565554 3457889999999999999999999999999999988

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.1e-17  Score=175.95  Aligned_cols=270  Identities=11%  Similarity=0.115  Sum_probs=191.6

Q ss_pred             CCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEEec---cCCCCEEEEEEC
Q 003842          488 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFS  563 (792)
Q Consensus       488 d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs-~Dg~I~vWdl~t~~~~~~l~---~h~~~V~~i~fs  563 (792)
                      +..+++|++.....++.+..+ .|.+.|.+|+|+|||++|++++ .|+.|++|++.......++.   .+...+..++|+
T Consensus        13 ~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~s   91 (333)
T d1ri6a_          13 SQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTD   91 (333)
T ss_dssp             GTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEEC
T ss_pred             CCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEc
Confidence            455677777655555554444 4778899999999999996655 58999999998665443332   345567889999


Q ss_pred             CCCCeEEEEeC-CCcEEEEeCCCCCc-eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-----
Q 003842          564 PSMPRLATSSF-DKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----  636 (792)
Q Consensus       564 pdg~~Lasgs~-Dg~V~IWdl~s~~~-~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----  636 (792)
                      |||++|++++. ++.|.+|+...... .......+...+.++.|+|++..+++....+..|.+|+..........     
T Consensus        92 pDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  171 (333)
T d1ri6a_          92 HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV  171 (333)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceee
Confidence            99999998875 66899998876322 223334566778899999999988877777888999998775433211     


Q ss_pred             e----CCeeEEEEecCCCEEEEEEc-CCeEEEEECCCC----eEEEEec------CCCCCeEEEEEcCCCCEEEEEeCC-
Q 003842          637 K----GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQ----ACRLSLQ------GHTKPIDSVCWDPSGELLASVSED-  700 (792)
Q Consensus       637 ~----~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~----~~~~~l~------~h~~~V~sv~~spdg~~Las~s~d-  700 (792)
                      .    .....+.|++++..++.... .+...+|+....    .....+.      ........+++++++++++..... 
T Consensus       172 ~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~  251 (333)
T d1ri6a_         172 TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA  251 (333)
T ss_dssp             ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred             eeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccC
Confidence            1    23356899999888877665 567778876543    1222221      123456778999999987776654 


Q ss_pred             -eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEE--ECCCCcEE
Q 003842          701 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELW--NMSENKTM  758 (792)
Q Consensus       701 -~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-dg~I~Iw--Dl~~~~~~  758 (792)
                       .+.+|++........+.........+..++|+|||++|++++. ++.|.||  |..++++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         252 SLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH  313 (333)
T ss_dssp             TEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred             CeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence             8999999766554455555555667888999999999888765 4789998  55666543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=5.1e-17  Score=174.49  Aligned_cols=249  Identities=11%  Similarity=0.033  Sum_probs=178.2

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeEEeccCCCCE-------EEEEECCCCCeEEEEe--CCCc
Q 003842          517 CCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSSLI-------TDVRFSPSMPRLATSS--FDKT  577 (792)
Q Consensus       517 ~lafspdg~~Lasgs----------~Dg~I~vWdl~t~~~~~~l~~h~~~V-------~~i~fspdg~~Lasgs--~Dg~  577 (792)
                      .++|+|||++|++++          .++.|.|||+.+++.+..+..+....       ..+.|+++++.+++..  .++.
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  149 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence            689999999999875          35789999999999998887665544       4577888888766554  3567


Q ss_pred             EEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC-------e--eEEEEecC
Q 003842          578 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------T--AQMRFQPH  648 (792)
Q Consensus       578 V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-------~--~~v~~sp~  648 (792)
                      +.+|+... ....    .+.....++.|+++++.++++.+.|+.+.+||...++........       .  ..+.+.+ 
T Consensus       150 ~~~~~~~~-~~~~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  223 (373)
T d2madh_         150 VGLVVQGG-SSDD----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK-  223 (373)
T ss_pred             eEEeeccC-CeEE----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC-
Confidence            88888876 3322    233456789999999999999999999999999988877654321       1  1122333 


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEEE--EecCCC----------CCeEEEEEcCCCCEEE----------EEeCC-eEEEE
Q 003842          649 LGRYLAAAAENVVSILDAETQACRL--SLQGHT----------KPIDSVCWDPSGELLA----------SVSED-SVRVW  705 (792)
Q Consensus       649 ~~~lla~s~dg~I~i~D~~t~~~~~--~l~~h~----------~~V~sv~~spdg~~La----------s~s~d-~I~Iw  705 (792)
                      +..+++.+.++.+.+|+..+.....  .+..+.          .....+++++++.+++          ....+ .|.+|
T Consensus       224 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~  303 (373)
T d2madh_         224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             CceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEE
Confidence            3456677788899999988765332  222221          2233456666666544          33334 78999


Q ss_pred             ECCCCCCcceEEEeecCCCceEEEEEeCCCCE--EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCC
Q 003842          706 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPS--LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE  775 (792)
Q Consensus       706 Dl~s~~~~~~i~~~~~~~~~i~si~fspdg~~--L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspd  775 (792)
                      |+.++   +.+..+. +...+..++|+|||+.  +++++.|+.|+|||+.+++.+ .+..+......|++.++
T Consensus       304 d~~t~---~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         304 TGLVG---QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             ECCCC---cEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            99877   4555443 4567889999999985  356788899999999999988 55568888888887654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=4.3e-18  Score=181.25  Aligned_cols=274  Identities=8%  Similarity=0.051  Sum_probs=190.0

Q ss_pred             eEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe----------CCCcEE
Q 003842          515 VICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVR  579 (792)
Q Consensus       515 V~~lafspdg~~Lasgs-----~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----------~Dg~V~  579 (792)
                      +.-.+.+|||+.+++..     .++.|.+||..+++.+.++..+...  .++|+|||++|++++          .|+.|+
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            33446689999988764     4567999999999999998766544  799999999887654          478999


Q ss_pred             EEeCCCCCceeEEecccC-------CCeEEEEEcCCCCeEEEEE-eCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCE
Q 003842          580 VWDADNPGYSLRTFMGHS-------ASVMSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR  651 (792)
Q Consensus       580 IWdl~s~~~~i~~~~~h~-------~~V~sl~fspd~~~ll~sg-s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~  651 (792)
                      +||+.+ +..+..+..+.       .....++|++++..+++.. +.+..+.+|+..+++.+..+........+......
T Consensus        82 v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d2bbkh_          82 VFDPVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT  160 (355)
T ss_dssp             EECTTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred             EEECCC-CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence            999998 55555554322       2235689999998776543 45678999999999988877655443333333344


Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEe------cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC--
Q 003842          652 YLAAAAENVVSILDAETQACRLSL------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN--  722 (792)
Q Consensus       652 lla~s~dg~I~i~D~~t~~~~~~l------~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~--  722 (792)
                      .++.+.|+...++.......+..+      ..+...+.+..+.+++..++.++.+ .+++|++..+.. ..+.....+  
T Consensus       161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~  239 (355)
T d2bbkh_         161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTE  239 (355)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCH
T ss_pred             eEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE-EEEeccCCccc
Confidence            455555555544444332211111      1233445667788888888888888 999999987532 122111111  


Q ss_pred             --------CCceEEEEEeCCCCEEEEEEcC----------CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC--EEEEE
Q 003842          723 --------GNKFHSCVFHPTYPSLLVIGCY----------QSLELWNMSENKTMTLTAHEGLIAALAVSTETG--YVASA  782 (792)
Q Consensus       723 --------~~~i~si~fspdg~~L~sgs~d----------g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~--~LaSg  782 (792)
                              ......+++++++..+++...+          ..|++||..+++.+....+...+.+++|+|||+  +++++
T Consensus       240 ~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~  319 (355)
T d2bbkh_         240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS  319 (355)
T ss_dssp             HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEE
T ss_pred             ceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEE
Confidence                    1123457899999988877654          369999999999885555666789999999997  45667


Q ss_pred             eCCCcEEEeC
Q 003842          783 SHDKFVKLWK  792 (792)
Q Consensus       783 s~DG~I~IWd  792 (792)
                      +.|+.|+|||
T Consensus       320 ~~d~~i~v~D  329 (355)
T d2bbkh_         320 TGDKTLYIHD  329 (355)
T ss_dssp             TTTTEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            7799999997

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=1.1e-16  Score=170.17  Aligned_cols=252  Identities=10%  Similarity=0.048  Sum_probs=170.2

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeEEeccCCC-------CEEEEEECCCCCeEEEEe--CCCc
Q 003842          517 CCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFSPSMPRLATSS--FDKT  577 (792)
Q Consensus       517 ~lafspdg~~Lasgs----------~Dg~I~vWdl~t~~~~~~l~~h~~-------~V~~i~fspdg~~Lasgs--~Dg~  577 (792)
                      .++|||||++|++.+          .|+.|++||+.+++.+..+..+..       ....++|+++++++++++  .+..
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  130 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  130 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCce
Confidence            689999999887643          478999999999998887764332       235689999999887765  4668


Q ss_pred             EEEEeCCCCCceeEEecccCC-------CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCC
Q 003842          578 VRVWDADNPGYSLRTFMGHSA-------SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG  650 (792)
Q Consensus       578 V~IWdl~s~~~~i~~~~~h~~-------~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~  650 (792)
                      +.+|+..+ +..+..+..+..       ....+.+++++..+++....++.+.+++........  ........+..++.
T Consensus       131 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  207 (355)
T d2bbkh_         131 VGVVDLEG-KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED--EFLINHPAYSQKAG  207 (355)
T ss_dssp             EEEEETTT-TEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT--SCBCSCCEEETTTT
T ss_pred             eeeeecCC-CcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccccee--cceeeeccccCCCC
Confidence            99999987 555555543322       223345555555555444445555555544332211  11234456788888


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEE--ecCCC----------CCeEEEEEcCCCCEEEEEeC-----------CeEEEEEC
Q 003842          651 RYLAAAAENVVSILDAETQACRLS--LQGHT----------KPIDSVCWDPSGELLASVSE-----------DSVRVWTV  707 (792)
Q Consensus       651 ~lla~s~dg~I~i~D~~t~~~~~~--l~~h~----------~~V~sv~~spdg~~Las~s~-----------d~I~IwDl  707 (792)
                      .++.++.++.+++|++..++....  ...+.          .....+++++++.+++....           +.|.+||.
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~  287 (355)
T d2bbkh_         208 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA  287 (355)
T ss_dssp             EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             eEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeC
Confidence            999999999999999988754321  21111          22345889999997776532           16999999


Q ss_pred             CCCCCcceEEEeecCCCceEEEEEeCCCCE--EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCC
Q 003842          708 GSGSEGECVHELSCNGNKFHSCVFHPTYPS--LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE  775 (792)
Q Consensus       708 ~s~~~~~~i~~~~~~~~~i~si~fspdg~~--L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspd  775 (792)
                      .++   +.+..+.. ...+.+++|+|||+.  +++++.++.|+|||+.+++.+ .+..+......+.+.++
T Consensus       288 ~t~---~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         288 KTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             TTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             CCC---cEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence            887   44544443 345789999999973  445566899999999999987 55566666666665544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=1.4e-15  Score=164.07  Aligned_cols=277  Identities=9%  Similarity=-0.028  Sum_probs=188.0

Q ss_pred             CCCCeEEEEEcCCCCEEEE---EeCC--CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe----------CC
Q 003842          511 STSKVICCHFSSDGKLLAT---GGHD--KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FD  575 (792)
Q Consensus       511 H~~~V~~lafspdg~~Las---gs~D--g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----------~D  575 (792)
                      +.+....++..+|++....   ...+  ..|++||..+++.+..+..+...  .++|+|||++|++++          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            4455555667788875432   2333  45778899999999988877655  589999999988764          36


Q ss_pred             CcEEEEeCCCCCceeEEecccCC-------CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecC
Q 003842          576 KTVRVWDADNPGYSLRTFMGHSA-------SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPH  648 (792)
Q Consensus       576 g~V~IWdl~s~~~~i~~~~~h~~-------~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~  648 (792)
                      +.|.+||..+ .+.+..+..+..       ....++|+|||++++++...++.|.+||+.+++.+..+..+.....+...
T Consensus        96 ~~v~v~D~~t-~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  174 (368)
T d1mdah_          96 DYVEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGA  174 (368)
T ss_dssp             EEEEEECTTT-CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEE
T ss_pred             CeEEEEECCC-CcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCC
Confidence            7899999998 555555543322       23468999999988877777899999999999998887654433333333


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEEEE------ecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecC
Q 003842          649 LGRYLAAAAENVVSILDAETQACRLS------LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCN  722 (792)
Q Consensus       649 ~~~lla~s~dg~I~i~D~~t~~~~~~------l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~  722 (792)
                      ...+++.+.||.+.+|+.........      +..+...+..+.+.+++.++++.+. .++++++..... ..+......
T Consensus       175 ~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~v~~~~~~~~~~-~~~~~~~~~  252 (368)
T d1mdah_         175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVAS-SILQGDIPAAGA-TMKAAIDGN  252 (368)
T ss_dssp             TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSS-CCEEEECCSSCC-EEECCCCSS
T ss_pred             CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCC-CEEEEeecCCce-EEEeecccc
Confidence            45666777788888888766533222      1223445566778888766654433 455566544321 111111110


Q ss_pred             ----------CCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-E-EEE
Q 003842          723 ----------GNKFHSCVFHPTYPSLLVIGCYQ---------SLELWNMSENKTMTLTAHEGLIAALAVSTETG-Y-VAS  781 (792)
Q Consensus       723 ----------~~~i~si~fspdg~~L~sgs~dg---------~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~-~-LaS  781 (792)
                                ......+++++++..+++...++         .|++||..+++.+....+...+.+++|+|||+ + +++
T Consensus       253 ~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s  332 (368)
T d1mdah_         253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEE
T ss_pred             cceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEE
Confidence                      11234578999998877764432         59999999999886556667899999999997 3 456


Q ss_pred             EeCCCcEEEeC
Q 003842          782 ASHDKFVKLWK  792 (792)
Q Consensus       782 gs~DG~I~IWd  792 (792)
                      +..|+.|+|||
T Consensus       333 ~~~~~~v~v~D  343 (368)
T d1mdah_         333 SAGTEVLDIYD  343 (368)
T ss_dssp             ETTTTEEEEEE
T ss_pred             eCCCCeEEEEE
Confidence            67789999997

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.60  E-value=5e-14  Score=156.80  Aligned_cols=300  Identities=12%  Similarity=0.046  Sum_probs=177.2

Q ss_pred             eEEEEeCCCeeeecCC-CeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeeeeec
Q 003842          432 LMMFGTDGAGTLTSPS-NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRA  510 (792)
Q Consensus       432 ~l~~s~Dg~~~~ss~s-~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~l~~  510 (792)
                      .+.|.+|+.+++.... ..+||+++++....++.                                         ..+..
T Consensus        21 ~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~-----------------------------------------~~~~~   59 (470)
T d2bgra1          21 SLRWISDHEYLYKQENNILVFNAEYGNSSVFLEN-----------------------------------------STFDE   59 (470)
T ss_dssp             CCEECSSSEEEEESSSCEEEEETTTCCEEEEECT-----------------------------------------TTTTT
T ss_pred             CCEeCCCCEEEEEcCCcEEEEECCCCCEEEEEch-----------------------------------------hhhhh
Confidence            3568888887766433 37799888875322210                                         12345


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          511 STSKVICCHFSSDGKLLATGGH---------DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs~---------Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      |...|.++.|||||++||.++.         ++.+.|||+++++ ...+..+...+..+.|+|||++||.. .++.+++|
T Consensus        60 ~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~  137 (470)
T d2bgra1          60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVK  137 (470)
T ss_dssp             SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEE
T ss_pred             ccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-ecccceEE
Confidence            6677999999999999998753         5678999999877 45688899999999999999999996 46789999


Q ss_pred             eCCCCCceeEEecc------------------cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc----------------
Q 003842          582 DADNPGYSLRTFMG------------------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSI----------------  627 (792)
Q Consensus       582 dl~s~~~~i~~~~~------------------h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl----------------  627 (792)
                      ++.++ ...+....                  ..+....+.|+|||+.+++....+..|..|++                
T Consensus       138 ~~~~g-~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~  216 (470)
T d2bgra1         138 IEPNL-PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV  216 (470)
T ss_dssp             SSTTS-CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred             ECCCC-ceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeee
Confidence            99873 33332221                  22334568899999987765554444444432                


Q ss_pred             -------------------CCCeeEEEee--------------CCeeEEEEecCCCEEEEEEc-CC-----eEEEEECCC
Q 003842          628 -------------------NNGSCTRVFK--------------GGTAQMRFQPHLGRYLAAAA-EN-----VVSILDAET  668 (792)
Q Consensus       628 -------------------~~~~~~~~~~--------------~~~~~v~~sp~~~~lla~s~-dg-----~I~i~D~~t  668 (792)
                                         ..+.......              ..+..+.|.+++..++.... .+     .+..+|..+
T Consensus       217 ~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~t  296 (470)
T d2bgra1         217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (470)
T ss_dssp             ECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             ccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCC
Confidence                               2111110000              00123566666654444332 11     344455666


Q ss_pred             CeEEEEecC------CCCCe-----EEEEEcCCCC--EEEEEeCC---eEEEEECCCCCCcceEEEeecCCCceEEEEEe
Q 003842          669 QACRLSLQG------HTKPI-----DSVCWDPSGE--LLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH  732 (792)
Q Consensus       669 ~~~~~~l~~------h~~~V-----~sv~~spdg~--~Las~s~d---~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fs  732 (792)
                      +........      ....+     ....|.+++.  +++....+   .|++|+...+    ....+..+...+..+ ++
T Consensus       297 g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~----~~~~lt~g~~~v~~~-~~  371 (470)
T d2bgra1         297 GRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK----DCTFITKGTWEVIGI-EA  371 (470)
T ss_dssp             TEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS----CCEESCCSSSCEEEE-EE
T ss_pred             CcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCC----ceeeeccCCeeEEEE-EE
Confidence            654432210      11111     1223444443  44445444   4666666443    233344445556665 45


Q ss_pred             CCCCEEEEEE-cCC------eEEEEECCCCcEEE-----EcccCCCeEEEEEeCCCCEEE
Q 003842          733 PTYPSLLVIG-CYQ------SLELWNMSENKTMT-----LTAHEGLIAALAVSTETGYVA  780 (792)
Q Consensus       733 pdg~~L~sgs-~dg------~I~IwDl~~~~~~~-----~~~h~~~V~sl~fspdg~~La  780 (792)
                      ++++.|+..+ .++      .|+-.++..+....     +..|...+.+++|||||++++
T Consensus       372 ~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~  431 (470)
T d2bgra1         372 LTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQ  431 (470)
T ss_dssp             ECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred             ECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEE
Confidence            5555554433 222      25555666544332     236778899999999999876

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=2.4e-13  Score=146.10  Aligned_cols=259  Identities=8%  Similarity=-0.028  Sum_probs=168.1

Q ss_pred             ceeeeeeeecCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeEEeccCCC-------CEEEEEEC
Q 003842          501 SFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFS  563 (792)
Q Consensus       501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs----------~Dg~I~vWdl~t~~~~~~l~~h~~-------~V~~i~fs  563 (792)
                      ..+.+..+.++...  .++|+|||++|++.+          .|+.|.+||..+++.+..+..+..       ....++|+
T Consensus        55 ~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~S  132 (368)
T d1mdah_          55 CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC  132 (368)
T ss_dssp             TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred             CCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEEC
Confidence            33556666666655  589999999998865          367899999999999888764432       23468999


Q ss_pred             CCCCeEEEEe-CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----
Q 003842          564 PSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----  637 (792)
Q Consensus       564 pdg~~Lasgs-~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----  637 (792)
                      |||++|+++. .++.|.+||+.+ .+.+..+..+....    +.+.+...++..+.||.+.+|++..........     
T Consensus       133 pDGk~l~va~~~~~~v~~~d~~~-~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~  207 (368)
T d1mdah_         133 ASSACLLFFLFGSSAAAGLSVPG-ASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT  207 (368)
T ss_dssp             TTSSCEEEEECSSSCEEEEEETT-TEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC
T ss_pred             CCCCEEEEEeCCCCeEEEEECCC-CcEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccc
Confidence            9999998876 579999999998 56666665443321    233445566677889999999887654332211     


Q ss_pred             ----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec--CCC----------CCeEEEEEcCCCCEEEEEeC--
Q 003842          638 ----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHT----------KPIDSVCWDPSGELLASVSE--  699 (792)
Q Consensus       638 ----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~--~h~----------~~V~sv~~spdg~~Las~s~--  699 (792)
                          .....+.+.+++..  .....+.+++++...........  .+.          .....+++++++..++....  
T Consensus       208 ~~~~~~~~~~~~~~~g~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~  285 (368)
T d1mdah_         208 GAQNCSSQAAQANYPGML--VWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH  285 (368)
T ss_dssp             TTSCBCSCCEEETTTTEE--EECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             cccccceeecccccCcEE--EEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCC
Confidence                11223444444322  23345566666666554333221  111          12345788899887665421  


Q ss_pred             -------C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE-E-EEEEcCCeEEEEECCCCcEEEEcccCCCeEE
Q 003842          700 -------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS-L-LVIGCYQSLELWNMSENKTMTLTAHEGLIAA  769 (792)
Q Consensus       700 -------d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~-L-~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~s  769 (792)
                             . .|.+||..++   +.+..+.. ...+..++|+|||+. + +++..++.|+|||..+++.+....-......
T Consensus       286 ~~~~~~~~~~v~v~D~~t~---~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~  361 (368)
T d1mdah_         286 SRSCLAAAENTSSVTASVG---QTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPES  361 (368)
T ss_dssp             SSCTTSCEEEEEEEESSSC---CEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCE
T ss_pred             CceeecCCceEEEEECCCC---cEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCE
Confidence                   1 5889999887   45554443 346788999999973 4 4445678999999999998854443333455


Q ss_pred             EEE
Q 003842          770 LAV  772 (792)
Q Consensus       770 l~f  772 (792)
                      |++
T Consensus       362 l~~  364 (368)
T d1mdah_         362 LSV  364 (368)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.51  E-value=9e-14  Score=152.10  Aligned_cols=255  Identities=10%  Similarity=0.035  Sum_probs=179.4

Q ss_pred             EEEEeCCCeEEEEECCCCceeEEecc------------------------------CCCCEEEEEECCCCCeEEEE-eCC
Q 003842          527 LATGGHDKKAVLWHTDTLKSKTNLEE------------------------------HSSLITDVRFSPSMPRLATS-SFD  575 (792)
Q Consensus       527 Lasgs~Dg~I~vWdl~t~~~~~~l~~------------------------------h~~~V~~i~fspdg~~Lasg-s~D  575 (792)
                      +++|+.+|.|+||++.+++.++++..                              |...+....++|||++|++. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56778899999999999988877632                              23334555567899988665 567


Q ss_pred             CcEEEEeCCCCCceeEEec-ccCCCeEEEEEcCCCCeEEEEEeCCCcE------------------EEEEcCCCeeEEEe
Q 003842          576 KTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEI------------------RYWSINNGSCTRVF  636 (792)
Q Consensus       576 g~V~IWdl~s~~~~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I------------------~iwdl~~~~~~~~~  636 (792)
                      .+|.+||+++ .++...+. .+...+..++|+|+++.+++++..+..+                  ..+|..+.+....+
T Consensus        94 ~rVavIDl~t-~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          94 TRVARIRLDI-MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TEEEEEETTT-TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CEEEEEECCC-CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            8999999998 44544443 4567899999999988765555444333                  55888887776654


Q ss_pred             e--CCeeEEEEecCCCEEEEEEcC-----------------------------------------CeEEEEECCCCeEEE
Q 003842          637 K--GGTAQMRFQPHLGRYLAAAAE-----------------------------------------NVVSILDAETQACRL  673 (792)
Q Consensus       637 ~--~~~~~v~~sp~~~~lla~s~d-----------------------------------------g~I~i~D~~t~~~~~  673 (792)
                      .  .....+.++|+++++++++.+                                         +.+.+++....+.+.
T Consensus       173 ~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~  252 (441)
T d1qnia2         173 IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR  252 (441)
T ss_dssp             EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred             ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence            3  456779999999998888753                                         234444445555566


Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCC--------CcceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003842          674 SLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGS--------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC  743 (792)
Q Consensus       674 ~l~~h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s~~--------~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~  743 (792)
                      .+..... ...+.++|||+++++++. + +|.|||+.+..        ...++.......-......|.++|..+.+...
T Consensus       253 ~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~  331 (441)
T d1qnia2         253 YIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFI  331 (441)
T ss_dssp             EECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETT
T ss_pred             EEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccc
Confidence            6655444 467999999998877654 4 99999986531        11223222233344566789999988888888


Q ss_pred             CCeEEEEECCC----------CcEE-EE-----cccCCCeEEEEEeCCCCEEEEEe
Q 003842          744 YQSLELWNMSE----------NKTM-TL-----TAHEGLIAALAVSTETGYVASAS  783 (792)
Q Consensus       744 dg~I~IwDl~~----------~~~~-~~-----~~h~~~V~sl~fspdg~~LaSgs  783 (792)
                      |..|..|++..          ...+ .+     .+|...+.+.+|+|||+||++++
T Consensus       332 ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         332 DSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             cceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            99999999742          1222 23     46777777888999999999994

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.33  E-value=2.1e-11  Score=133.12  Aligned_cols=247  Identities=12%  Similarity=0.071  Sum_probs=164.0

Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEEec-cCCCCEEEEEECCCCCe--EEEEeCCC-------
Q 003842          508 VRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPR--LATSSFDK-------  576 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs-~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspdg~~--Lasgs~Dg-------  576 (792)
                      ...|...+.+..++|||++|++.. .++.|.+||++++++...+. .+...+..++|+|+++.  ++..+.+.       
T Consensus        67 gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg  146 (441)
T d1qnia2          67 GDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDG  146 (441)
T ss_dssp             CCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSS
T ss_pred             CcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcc
Confidence            345666778888899999997765 67899999999999888776 46778999999999984  44444332       


Q ss_pred             ----------cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCC---------------------------
Q 003842          577 ----------TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---------------------------  619 (792)
Q Consensus       577 ----------~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D---------------------------  619 (792)
                                .+..+|..+ ......+.. ......+.|+|+|+++++++...                           
T Consensus       147 ~~~~~~~~~~~~~~iD~~t-~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~  224 (441)
T d1qnia2         147 TDFSLDNSYTMFTAIDAET-MDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA  224 (441)
T ss_dssp             SCCCGGGEEEEEEEEETTT-CSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred             cccccccccceEEeecCcc-ceeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence                      234567766 333333332 34577899999999888776432                           


Q ss_pred             -------------CcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEc-CCeEEEEECCCCe-----------EE
Q 003842          620 -------------GEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQA-----------CR  672 (792)
Q Consensus       620 -------------g~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~-----------~~  672 (792)
                                   +.+.+++....+.++.+..  ....+.++|+++++++++. +++|.|||+++..           ++
T Consensus       225 ~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~  304 (441)
T d1qnia2         225 AVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTI  304 (441)
T ss_dssp             HHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGE
T ss_pred             EecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEE
Confidence                         3344444444444544432  2455899999999877654 8999999986522           11


Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC------CCC-cceEEEee-----cCCCceEEEEEeCCCCEEE
Q 003842          673 LSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS------GSE-GECVHELS-----CNGNKFHSCVFHPTYPSLL  739 (792)
Q Consensus       673 ~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s------~~~-~~~i~~~~-----~~~~~i~si~fspdg~~L~  739 (792)
                      .-.....-......|+++|..+.+...| .|..|++..      +.. ...+..+.     +|...+.+.+++|||+||+
T Consensus       305 ~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~  384 (441)
T d1qnia2         305 VAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLV  384 (441)
T ss_dssp             EECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEE
T ss_pred             EeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEE
Confidence            1111111223456899999988888888 999999842      111 22344443     4444455557899999999


Q ss_pred             EEEc---CC----------eEEEEECCCCc
Q 003842          740 VIGC---YQ----------SLELWNMSENK  756 (792)
Q Consensus       740 sgs~---dg----------~I~IwDl~~~~  756 (792)
                      +++.   |+          .-.++|+...+
T Consensus       385 s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~  414 (441)
T d1qnia2         385 VLSKFSKDRFLPVGPLHPENDQLIDISGEE  414 (441)
T ss_dssp             EEESCCGGGSCCCSSSCCEEEEEEECSSSS
T ss_pred             ecCccccccCcCCCCCCCccceeEEecCCe
Confidence            9954   43          45667776544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=4.4e-10  Score=113.96  Aligned_cols=232  Identities=13%  Similarity=0.145  Sum_probs=158.6

Q ss_pred             eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC---cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCe
Q 003842          535 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD  611 (792)
Q Consensus       535 ~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg---~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~  611 (792)
                      .|+|.|.+ |.....+..+...+...+|||||+.||....+.   .+.+.+...  .....+..+...+....|+|++..
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~   96 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--GAVRQVASFPRHNGAPAFSPDGSK   96 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--CCEEEEECCSSCEEEEEECTTSSE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeeccc--CceeEEeeeecccccceecCCCCe
Confidence            57787876 444555555677789999999999998775443   355556654  445566677888999999999998


Q ss_pred             EEEEEeCCCcEEEEEc--CCCeeEEEeeC--CeeEEEEecCCCEEEEEEc-CC--eEEEEECCCCeEEEEecCCCCCeEE
Q 003842          612 LICSCDGDGEIRYWSI--NNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPIDS  684 (792)
Q Consensus       612 ll~sgs~Dg~I~iwdl--~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~-dg--~I~i~D~~t~~~~~~l~~h~~~V~s  684 (792)
                      +++....++...++..  ...........  ......+++++..++.... ++  .|.++++....... +.........
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~  175 (269)
T d2hqsa1          97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQD  175 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEE
T ss_pred             eeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccccee-eecccccccc
Confidence            8877766655444433  33333333222  2334567777777666654 33  56777777664333 3335566778


Q ss_pred             EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcE
Q 003842          685 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKT  757 (792)
Q Consensus       685 v~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---~I~IwDl~~~~~  757 (792)
                      ..|+|+++.++..+.+    .|.++|...+    .. .............|+|||++|+..+..+   .|++|++..+..
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~----~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATG----GV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTC----CE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             cccccccceeEEEeecCCceeeeEeecccc----cc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            8999999988877654    4555555433    12 2233445567889999999998776543   789999999988


Q ss_pred             EEEcccCCCeEEEEEeCC
Q 003842          758 MTLTAHEGLIAALAVSTE  775 (792)
Q Consensus       758 ~~~~~h~~~V~sl~fspd  775 (792)
                      ..+....+.+...+|+|-
T Consensus       251 ~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         251 ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EECCCSSSEEEEEEECCC
T ss_pred             EEEeCCCCcEEeEEeCCC
Confidence            888888888999999983

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.32  E-value=2.8e-11  Score=134.12  Aligned_cols=136  Identities=15%  Similarity=0.119  Sum_probs=107.8

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-----cCCCCEEEEEECCCCCeEEEEeC---------CCcEEEEe
Q 003842          517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-----EHSSLITDVRFSPSMPRLATSSF---------DKTVRVWD  582 (792)
Q Consensus       517 ~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-----~h~~~V~~i~fspdg~~Lasgs~---------Dg~V~IWd  582 (792)
                      .+.|.+|+.++..  .|+.|.+||+.+++....+.     .|...|.++.|+||+++|++++.         ++.+.|||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4678999987764  57889999999998876554     35578999999999999998753         57789999


Q ss_pred             CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---------------------Cee
Q 003842          583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---------------------GTA  641 (792)
Q Consensus       583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---------------------~~~  641 (792)
                      +.+ + .+..+..+...+..+.|+|||..++++  .++.+++|+..+++..+....                     ...
T Consensus        99 ~~~-~-~~~~l~~~~~~~~~~~~SPDG~~ia~~--~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~  174 (470)
T d2bgra1          99 LNK-R-QLITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (470)
T ss_dssp             TTT-T-EECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             CCC-C-cccccccCCccccccccccCcceeeEe--ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence            986 3 456678889999999999999987754  478899999998876654321                     124


Q ss_pred             EEEEecCCCEEEEEEcC
Q 003842          642 QMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       642 ~v~~sp~~~~lla~s~d  658 (792)
                      .+.|+|++.+|+....|
T Consensus       175 ~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         175 ALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             CEEECTTSSEEEEEEEE
T ss_pred             ccEECCCCCccceeEec
Confidence            47799999999887654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.25  E-value=7.6e-10  Score=118.81  Aligned_cols=266  Identities=11%  Similarity=0.110  Sum_probs=162.9

Q ss_pred             EEEEEeC--CCeEEEEE--CCCCcee--EEe-ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe-cccC
Q 003842          526 LLATGGH--DKKAVLWH--TDTLKSK--TNL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHS  597 (792)
Q Consensus       526 ~Lasgs~--Dg~I~vWd--l~t~~~~--~~l-~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~-~~h~  597 (792)
                      .|++|++  .+.|+++.  .++++..  ... ......+..|+|++++++|++++. +.+..|.+.......... ....
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~   82 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence            4666654  45676554  4455432  221 224455677999999999988865 458888887644333222 1223


Q ss_pred             CCeEEEEEcCCCCeEEEEEe--CCCcEEEEEcCCC-eeE------------EE---e----eCCeeEEEEecCCCEEEEE
Q 003842          598 ASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNG-SCT------------RV---F----KGGTAQMRFQPHLGRYLAA  655 (792)
Q Consensus       598 ~~V~sl~fspd~~~ll~sgs--~Dg~I~iwdl~~~-~~~------------~~---~----~~~~~~v~~sp~~~~lla~  655 (792)
                      .....++++++++.++++..  ..+.|..+.+... ...            ..   .    ..+...+.|+|++++++++
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~  162 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence            34557788888775544432  2455555544321 110            00   0    1245689999999999888


Q ss_pred             Ec-CCeEEEEECCCC-eEE--EEe--cCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcce--EEEeec----
Q 003842          656 AA-ENVVSILDAETQ-ACR--LSL--QGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGEC--VHELSC----  721 (792)
Q Consensus       656 s~-dg~I~i~D~~t~-~~~--~~l--~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~--i~~~~~----  721 (792)
                      .. .+.|.+|+.... ...  ..+  .......+.++|+|+++++++..+.  .|.+|++........  +..+..    
T Consensus       163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~  242 (365)
T d1jofa_         163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG  242 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred             eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccc
Confidence            76 458888876543 222  222  2234568899999999988777765  899999876532211  111110    


Q ss_pred             ----------CCCceEEEEEeCCCCEEEEEEcC------CeEEEEECCCCcEE----EE---cccCCCeEEEEEeC-CCC
Q 003842          722 ----------NGNKFHSCVFHPTYPSLLVIGCY------QSLELWNMSENKTM----TL---TAHEGLIAALAVST-ETG  777 (792)
Q Consensus       722 ----------~~~~i~si~fspdg~~L~sgs~d------g~I~IwDl~~~~~~----~~---~~h~~~V~sl~fsp-dg~  777 (792)
                                .......+.++|+|++|+++...      +.|.+|++.....+    .+   ........+++|+| +|+
T Consensus       243 ~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~  322 (365)
T d1jofa_         243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE  322 (365)
T ss_dssp             CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred             ccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCC
Confidence                      11235678999999999887542      24777877654322    11   12345677899998 889


Q ss_pred             EEEEEe-CCCcEEEeC
Q 003842          778 YVASAS-HDKFVKLWK  792 (792)
Q Consensus       778 ~LaSgs-~DG~I~IWd  792 (792)
                      +|++++ .++.|.||+
T Consensus       323 ~l~va~~~s~~v~v~~  338 (365)
T d1jofa_         323 WMAITDDQEGWLEIYR  338 (365)
T ss_dssp             EEEEECSSSCEEEEEE
T ss_pred             EEEEEeCCCCeEEEEE
Confidence            887775 578999984

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.20  E-value=2.9e-09  Score=114.09  Aligned_cols=245  Identities=9%  Similarity=0.003  Sum_probs=153.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe--ccCCCCEEEEEECCCCCeE--EEEe-CCCcEEEEeCCC
Q 003842          511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EEHSSLITDVRFSPSMPRL--ATSS-FDKTVRVWDADN  585 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l--~~h~~~V~~i~fspdg~~L--asgs-~Dg~V~IWdl~s  585 (792)
                      ....+.-|+|++|+++|+++.. +.+..|.+.....+..+  .........+.++++++.+  +++. ..+.|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            4455677999999999988764 56778876532222222  1223345677888888743  3332 245666655443


Q ss_pred             CCceeEEe----------------cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE---Ee-----eCCee
Q 003842          586 PGYSLRTF----------------MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VF-----KGGTA  641 (792)
Q Consensus       586 ~~~~i~~~----------------~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~---~~-----~~~~~  641 (792)
                      .+.....+                ......+.++.|+|++++++++......|.+|++.....+.   ..     .....
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence            22111111                11233578999999999888777667789998876432221   11     12456


Q ss_pred             EEEEecCCCEEEEEEc-CCeEEEEECCCCeE--EEEec-----------------CCCCCeEEEEEcCCCCEEEEEeC--
Q 003842          642 QMRFQPHLGRYLAAAA-ENVVSILDAETQAC--RLSLQ-----------------GHTKPIDSVCWDPSGELLASVSE--  699 (792)
Q Consensus       642 ~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~--~~~l~-----------------~h~~~V~sv~~spdg~~Las~s~--  699 (792)
                      .+.|+|+++++++... ++.|.+||....+.  +....                 .+......+.++|||++|+++..  
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence            7999999998877776 78999999876532  22111                 01112457899999999887643  


Q ss_pred             C-----eEEEEECCCCCCcc---eEEEeecCCCceEEEEEeC-CCCEEEEEE-cCCeEEEEECCCCc
Q 003842          700 D-----SVRVWTVGSGSEGE---CVHELSCNGNKFHSCVFHP-TYPSLLVIG-CYQSLELWNMSENK  756 (792)
Q Consensus       700 d-----~I~IwDl~s~~~~~---~i~~~~~~~~~i~si~fsp-dg~~L~sgs-~dg~I~IwDl~~~~  756 (792)
                      +     .|.+|++.......   .+............++++| +|++|+++. .++.|.+|+++...
T Consensus       277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            2     37777776432222   1122223445667899998 899888886 45799999876554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.17  E-value=4.6e-09  Score=109.23  Aligned_cols=246  Identities=11%  Similarity=0.014  Sum_probs=156.9

Q ss_pred             eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003842          504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA  583 (792)
Q Consensus       504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl  583 (792)
                      .+..+...+ .+..+++++||+++++...+++|+.|+.+. + ...+......+.+++|.++|+++++...++.+.+|+.
T Consensus        20 v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~   96 (302)
T d2p4oa1          20 IITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSL   96 (302)
T ss_dssp             EEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             EEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEe
Confidence            344443322 488999999999999999999998888553 3 3445556678999999999999999888888888887


Q ss_pred             CCCCceeEEec--ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeE
Q 003842          584 DNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVV  661 (792)
Q Consensus       584 ~s~~~~i~~~~--~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I  661 (792)
                      .........+.  ........+++.+++. ++++.+.++.|..+|...+...........                    
T Consensus        97 ~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--------------------  155 (302)
T d2p4oa1          97 VKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPML--------------------  155 (302)
T ss_dssp             ECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGG--------------------
T ss_pred             cccccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCcc--------------------
Confidence            65333333332  2445678899998864 555767778888888776542221111000                    


Q ss_pred             EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003842          662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL  739 (792)
Q Consensus       662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~-s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~  739 (792)
                               ..............+.++.  .+++.+ +.. .|+.+++...........+. .......++|.++|++++
T Consensus       156 ---------~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~v  223 (302)
T d2p4oa1         156 ---------ARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYG  223 (302)
T ss_dssp             ---------SCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEE
T ss_pred             ---------ceeeccCcccccccccccC--CceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEE
Confidence                     0000011122345566653  334333 333 78888876543322222221 233456799999999777


Q ss_pred             EEEcCCeEEEEECCCCcEEEE--cccCCCeEEEEE---eCCCCEEEEEeCC
Q 003842          740 VIGCYQSLELWNMSENKTMTL--TAHEGLIAALAV---STETGYVASASHD  785 (792)
Q Consensus       740 sgs~dg~I~IwDl~~~~~~~~--~~h~~~V~sl~f---spdg~~LaSgs~D  785 (792)
                      +...++.|..|+.........  ...-...++++|   .+|++.|+.++..
T Consensus       224 a~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         224 ATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             ECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            777788999998775543332  233456889999   6788888766544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=2.4e-08  Score=100.64  Aligned_cols=222  Identities=14%  Similarity=0.153  Sum_probs=147.6

Q ss_pred             eeeecCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC-CCcEEEE
Q 003842          506 NSVRASTSKVICCHFSSDGKLLATGGHDK---KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVW  581 (792)
Q Consensus       506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg---~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~-Dg~V~IW  581 (792)
                      ..+..+...+...+|||||++||....+.   .+.+.+...+.. ..+..+...+....|+|+++.|+.... ++...++
T Consensus        32 ~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~  110 (269)
T d2hqsa1          32 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  110 (269)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCcccee
Confidence            33444566788999999999999876443   466777766554 445567788899999999998877654 3333333


Q ss_pred             eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc--EEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEc
Q 003842          582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~--I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~  657 (792)
                      .......................+++++..++++...+|.  |.++++..+.......  .......|+|++..++..+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  190 (269)
T d2hqsa1         111 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS  190 (269)
T ss_dssp             EEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred             ecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEee
Confidence            3333233344444455566677788888888877777765  5555665554433322  23445789999999888777


Q ss_pred             CC---eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC---C-eEEEEECCCCCCcceEEEeecCCCceEEEE
Q 003842          658 EN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVHELSCNGNKFHSCV  730 (792)
Q Consensus       658 dg---~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~---d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~  730 (792)
                      ++   .|.++|...+...  +..+.......+|+|||++|+..+.   . .|++|++..+    ....+......+...+
T Consensus       191 ~~~~~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~----~~~~lt~~~g~~~~p~  264 (269)
T d2hqsa1         191 NGGQQHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR----FKARLPATDGQVKFPA  264 (269)
T ss_dssp             CSSCEEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC----CEEECCCSSSEEEEEE
T ss_pred             cCCceeeeEeecccccce--EeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC----CEEEEeCCCCcEEeEE
Confidence            54   5666666665543  3334556778899999998876553   2 7899999754    2344555566778889


Q ss_pred             EeCC
Q 003842          731 FHPT  734 (792)
Q Consensus       731 fspd  734 (792)
                      |+|-
T Consensus       265 WSP~  268 (269)
T d2hqsa1         265 WSPY  268 (269)
T ss_dssp             ECCC
T ss_pred             eCCC
Confidence            9883

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.09  E-value=9e-09  Score=104.58  Aligned_cols=232  Identities=12%  Similarity=0.010  Sum_probs=151.0

Q ss_pred             CCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE
Q 003842          555 SLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT  633 (792)
Q Consensus       555 ~~V~~i~fspdg~~Lasg-s~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~  633 (792)
                      ..-.+|++.++|+++++. +..+.|..++..........+. .......|++.+++. ++++....+.|++++-.+...+
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN-GLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTV   91 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCC-SCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccC-CccCceEEEEcCCCC-EEEeeeeeceeeeeeeccceee
Confidence            345899999999976665 4557778777765332222222 223457889999875 6656666666766665555544


Q ss_pred             EEee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003842          634 RVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG  710 (792)
Q Consensus       634 ~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~  710 (792)
                      ..+.  .....+++.++++.+++-..+..+.+++...................++++++++++++...+ .|..||....
T Consensus        92 ~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~  171 (260)
T d1rwia_          92 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  171 (260)
T ss_dssp             CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             eeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc
Confidence            3333  345678888887766665556778888776654333222223446789999999988777666 8999987653


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc-ccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003842          711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-AHEGLIAALAVSTETGYVASASHDKFVK  789 (792)
Q Consensus       711 ~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~-~h~~~V~sl~fspdg~~LaSgs~DG~I~  789 (792)
                         ...............+++.+++.++++....+.|..++........+. ..-....+|+++++|.++++-..+++|+
T Consensus       172 ---~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~  248 (260)
T d1rwia_         172 ---NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV  248 (260)
T ss_dssp             ---CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             ---eeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEE
Confidence               222222233456788999999987666666778988887665544332 2335678999999999888766777777


Q ss_pred             Ee
Q 003842          790 LW  791 (792)
Q Consensus       790 IW  791 (792)
                      .+
T Consensus       249 ~i  250 (260)
T d1rwia_         249 KL  250 (260)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.05  E-value=2.6e-08  Score=101.00  Aligned_cols=235  Identities=11%  Similarity=0.005  Sum_probs=148.7

Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003842          513 SKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR  591 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasg-s~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~  591 (792)
                      ....+|+++++|++.++. +..+.|..++............-......|+++++++++++....+.|++++..+ ...+.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~-~~~~~   92 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN-NQTVL   92 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCS-CCEEC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecc-ceeee
Confidence            346899999999966655 4557777776654433222222233467889999998877777666666665443 33222


Q ss_pred             EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---eCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003842          592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAET  668 (792)
Q Consensus       592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t  668 (792)
                      .. .......+|++.++++ ++++-..+..+..++..........   ......+++.++++.+++...++.|..+|.+.
T Consensus        93 ~~-~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~  170 (260)
T d1rwia_          93 PF-DGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  170 (260)
T ss_dssp             CC-CSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             ee-eeeeecccccccccce-eEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccc
Confidence            22 2335678999999875 5545555666777776554332211   12446788999888777777788999999887


Q ss_pred             CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003842          669 QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL  747 (792)
Q Consensus       669 ~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I  747 (792)
                      ................|+++++|+++++.... .|..++.....   ........-.....+++++++..+++-..+++|
T Consensus       171 ~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~---~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI  247 (260)
T d1rwia_         171 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV  247 (260)
T ss_dssp             CCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC---CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEE
T ss_pred             ceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe---EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEE
Confidence            65444333445567899999999988887766 78888765331   111111223456889999998765554555666


Q ss_pred             EEEECC
Q 003842          748 ELWNMS  753 (792)
Q Consensus       748 ~IwDl~  753 (792)
                      +.++..
T Consensus       248 ~~i~~~  253 (260)
T d1rwia_         248 VKLTSL  253 (260)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            655543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.02  E-value=4.6e-07  Score=94.62  Aligned_cols=229  Identities=13%  Similarity=0.112  Sum_probs=149.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC--CcEEEEeCCCCCc
Q 003842          511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGY  588 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D--g~V~IWdl~s~~~  588 (792)
                      ....+..++|+++|++.++-..++.|+.|+.++......+.........|+|.++|+++++...+  ....++.+.....
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            34456789999999988877788999999988877776666667778999999999877775432  2334444433233


Q ss_pred             eeEEeccc---CCCeEEEEEcCCCCeEEEEEeC------CCcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEc
Q 003842          589 SLRTFMGH---SASVMSLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA  657 (792)
Q Consensus       589 ~i~~~~~h---~~~V~sl~fspd~~~ll~sgs~------Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~  657 (792)
                      .+..+..+   ......+++.++|. ++++...      .+.+..++...........  .....++|+++++.++++..
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             eeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecc
Confidence            33332222   34578899999986 4434322      2345666555443333222  23456999999987766654


Q ss_pred             -CCeEEEEECCCC-e---EE----EEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec------
Q 003842          658 -ENVVSILDAETQ-A---CR----LSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC------  721 (792)
Q Consensus       658 -dg~I~i~D~~t~-~---~~----~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~------  721 (792)
                       .+.|+.||+... .   ..    ............++++.+|+++++...+ .|.+||- .+   +.+..+..      
T Consensus       197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G---~~l~~i~~P~~~~~  272 (319)
T d2dg1a1         197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG---YPIGQILIPGRDEG  272 (319)
T ss_dssp             GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS---CEEEEEECTTGGGT
T ss_pred             cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CC---cEEEEEeCCCcCCC
Confidence             789999987642 1   11    1111112235679999999988877766 9999995 44   45555442      


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcC
Q 003842          722 NGNKFHSCVFHPTYPSLLVIGCY  744 (792)
Q Consensus       722 ~~~~i~si~fspdg~~L~sgs~d  744 (792)
                      +...+++++|.++...+++...+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         273 HMLRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             CSCBCCEEEECTTSCEEEEEEEC
T ss_pred             cCceeeeEEEeCCCCEEEEEcCC
Confidence            23457899999988877776653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.00  E-value=1.5e-07  Score=98.39  Aligned_cols=237  Identities=12%  Similarity=0.104  Sum_probs=151.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCceeEEecc----CCCCEEEEEECCCCCeEEEEeCCCcEE
Q 003842          511 STSKVICCHFSSDGKLLATGGH-------DKKAVLWHTDTLKSKTNLEE----HSSLITDVRFSPSMPRLATSSFDKTVR  579 (792)
Q Consensus       511 H~~~V~~lafspdg~~Lasgs~-------Dg~I~vWdl~t~~~~~~l~~----h~~~V~~i~fspdg~~Lasgs~Dg~V~  579 (792)
                      .-.....++|+++|+++++...       +|.|..||.+++........    ....-..++|.++++.|+++.....|.
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~   95 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEE
Confidence            3344677899999997776432       46799999888765544332    123356899999999888888777788


Q ss_pred             EEeCCCCCceeEEecc-cC----CCeEEEEEcCCCCeEEEEEeC---------------CCcEEEEEcCCCeeEEEee--
Q 003842          580 VWDADNPGYSLRTFMG-HS----ASVMSLDFHPNKDDLICSCDG---------------DGEIRYWSINNGSCTRVFK--  637 (792)
Q Consensus       580 IWdl~s~~~~i~~~~~-h~----~~V~sl~fspd~~~ll~sgs~---------------Dg~I~iwdl~~~~~~~~~~--  637 (792)
                      ++|.+..  ....+.. ..    ...+.++|.++|..++ +-..               +|.|+.++.. ++......  
T Consensus        96 ~~~~~g~--~~~~~~~~~~g~~~~~pndl~~d~~G~lyv-td~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~  171 (314)
T d1pjxa_          96 VVQTDGT--FEEIAKKDSEGRRMQGCNDCAFDYEGNLWI-TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF  171 (314)
T ss_dssp             EEETTSC--EEECCSBCTTSCBCBCCCEEEECTTSCEEE-EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE
T ss_pred             EEeCCCc--EEEEEeccccccccCCCcEEEECCCCCEEE-ecCccCcccccccceeccCCceEEEEeec-CceeEeeCCc
Confidence            8888752  2222211 11    1357899999986444 4321               2345445443 33333322  


Q ss_pred             CCeeEEEEecCCC----EEEEE-EcCCeEEEEECCCCeEE------EEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEE
Q 003842          638 GGTAQMRFQPHLG----RYLAA-AAENVVSILDAETQACR------LSLQG-HTKPIDSVCWDPSGELLASVSED-SVRV  704 (792)
Q Consensus       638 ~~~~~v~~sp~~~----~lla~-s~dg~I~i~D~~t~~~~------~~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~I  704 (792)
                      ...+.++|+++++    .++++ +..+.|..||+.....+      ..+.. .......++++.+|+++++.... .|.+
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence            2345688988765    45444 45788999987543221      22222 22235689999999987776655 8999


Q ss_pred             EECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCC
Q 003842          705 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSE  754 (792)
Q Consensus       705 wDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~~  754 (792)
                      ||...+   ..+..+........+|+|.++++.|++.. .++.|+.+++..
T Consensus       252 ~dp~~g---~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         252 FGPDGG---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             ECTTCB---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EeCCCC---EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            998655   33444455556789999999998666554 557888888753

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=7.1e-08  Score=106.58  Aligned_cols=271  Identities=10%  Similarity=0.054  Sum_probs=158.8

Q ss_pred             CCeEEEEEcCCCCEEEEEe---------CCCeEEEEECCCCceeEEe--ccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003842          513 SKVICCHFSSDGKLLATGG---------HDKKAVLWHTDTLKSKTNL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVW  581 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs---------~Dg~I~vWdl~t~~~~~~l--~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW  581 (792)
                      -.+....|||||++|+...         ..+.+.|||+.++......  ......+....|+|||+.||... ++.|.+.
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence            3567788999999988764         3578899999988754432  23344566789999999998876 5668888


Q ss_pred             eCCCCCceeEEecccCCCe-----------------EEEEEcCCCCeEEEEEeCCCcEEEE-------------------
Q 003842          582 DADNPGYSLRTFMGHSASV-----------------MSLDFHPNKDDLICSCDGDGEIRYW-------------------  625 (792)
Q Consensus       582 dl~s~~~~i~~~~~h~~~V-----------------~sl~fspd~~~ll~sgs~Dg~I~iw-------------------  625 (792)
                      +...+.....+..+....|                 .++.|+|||+.|++.--.+..|..|                   
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp  219 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence            8876333222222222222                 4788999999888765444444444                   


Q ss_pred             --------------EcCCCeeEEEeeC---------CeeEEEEecCCCEEEEEEc-C---CeEEEEECCCCeEEEEecC-
Q 003842          626 --------------SINNGSCTRVFKG---------GTAQMRFQPHLGRYLAAAA-E---NVVSILDAETQACRLSLQG-  677 (792)
Q Consensus       626 --------------dl~~~~~~~~~~~---------~~~~v~~sp~~~~lla~s~-d---g~I~i~D~~t~~~~~~l~~-  677 (792)
                                    |+..+........         -...+.|.+++..++.... +   ..|.++|..++++...+.. 
T Consensus       220 ~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~  299 (465)
T d1xfda1         220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE  299 (465)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred             ccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc
Confidence                          4433322111100         1234678888664444333 1   2688899999977655443 


Q ss_pred             CCCCe----EEEEEcCCCCEEEE--Ee-C---CeEEEEECCCC---CCcceEEEeecCCCceEEE-EEeCCCCEEEEEEc
Q 003842          678 HTKPI----DSVCWDPSGELLAS--VS-E---DSVRVWTVGSG---SEGECVHELSCNGNKFHSC-VFHPTYPSLLVIGC  743 (792)
Q Consensus       678 h~~~V----~sv~~spdg~~Las--~s-~---d~I~IwDl~s~---~~~~~i~~~~~~~~~i~si-~fspdg~~L~sgs~  743 (792)
                      ...+|    ....|+++|+.++.  .+ .   +.++.+++...   .....+..+....-.|..+ .|..+++.|+..+.
T Consensus       300 ~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~  379 (465)
T d1xfda1         300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLST  379 (465)
T ss_dssp             CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEES
T ss_pred             CCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEe
Confidence            22222    34578999984332  22 1   24554443211   1122233333334445554 68898887766554


Q ss_pred             CC-----eEEEEECCCCcEE---E-EcccCCCeEEEEEeCCCCEEEEEeC
Q 003842          744 YQ-----SLELWNMSENKTM---T-LTAHEGLIAALAVSTETGYVASASH  784 (792)
Q Consensus       744 dg-----~I~IwDl~~~~~~---~-~~~h~~~V~sl~fspdg~~LaSgs~  784 (792)
                      ..     .|+-.++..+...   + ..........+.|||++++++..+.
T Consensus       380 ~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s  429 (465)
T d1xfda1         380 EDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (465)
T ss_dssp             SSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             CCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEee
Confidence            22     3444455543322   1 1134445779999999999875443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.96  E-value=5.2e-07  Score=92.13  Aligned_cols=227  Identities=13%  Similarity=0.131  Sum_probs=154.7

Q ss_pred             CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecc------cCCCeEEEEEcCCCCeEEEEE-eCCCcEEEEEcC
Q 003842          556 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSC-DGDGEIRYWSIN  628 (792)
Q Consensus       556 ~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~------h~~~V~sl~fspd~~~ll~sg-s~Dg~I~iwdl~  628 (792)
                      ....|+++++++++++-..+..|++||.+  +..+..+..      ....-..+++..+...++++. +.++.|.+++..
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~--G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC--CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            46789999999888887788899999976  455555532      112345666666655455443 445677777754


Q ss_pred             CCeeEEEee----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe--cCCCCCeEEEEEcCCCCEEEEEeCC-e
Q 003842          629 NGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL--QGHTKPIDSVCWDPSGELLASVSED-S  701 (792)
Q Consensus       629 ~~~~~~~~~----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l--~~h~~~V~sv~~spdg~~Las~s~d-~  701 (792)
                       ++....+.    .....+++.+++..+++....+.+.+++.. ++.+..+  ..+......++++++++++++.... .
T Consensus       102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~  179 (279)
T d1q7fa_         102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  179 (279)
T ss_dssp             -SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             -ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccc
Confidence             55555553    234567888888777776677788888865 4555554  3355678889999999888777766 9


Q ss_pred             EEEEECCCCCCcceEEEee--cCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEE-EEc--ccCCCeEEEEEeCC
Q 003842          702 VRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTM-TLT--AHEGLIAALAVSTE  775 (792)
Q Consensus       702 I~IwDl~s~~~~~~i~~~~--~~~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~~~~~~-~~~--~h~~~V~sl~fspd  775 (792)
                      |++||...    ..+..+.  +.......+++.++|+.+++-.. ++.|.+|+.. ++.+ .+.  ........|++.+|
T Consensus       180 V~~~d~~G----~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~d  254 (279)
T d1q7fa_         180 VKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDD  254 (279)
T ss_dssp             EEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETT
T ss_pred             eeeeecCC----ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEeCCCCCCCEeEEEEeCC
Confidence            99999743    3444443  23445789999999986665443 3479999854 5544 332  23346889999999


Q ss_pred             CCEEEEEeCCCcEEEeC
Q 003842          776 TGYVASASHDKFVKLWK  792 (792)
Q Consensus       776 g~~LaSgs~DG~I~IWd  792 (792)
                      |.+++ ++.+++|++|+
T Consensus       255 G~l~V-~~~n~~v~~fr  270 (279)
T d1q7fa_         255 GSVVL-ASKDYRLYIYR  270 (279)
T ss_dssp             TEEEE-EETTTEEEEEE
T ss_pred             CcEEE-EeCCCeEEEEE
Confidence            97555 56789999985

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.95  E-value=7.7e-07  Score=90.84  Aligned_cols=231  Identities=10%  Similarity=0.132  Sum_probs=157.1

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc------CCCCEEEEEECCCCC-eEEEE-eCCCcEEEEeCCC
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE------HSSLITDVRFSPSMP-RLATS-SFDKTVRVWDADN  585 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~------h~~~V~~i~fspdg~-~Lasg-s~Dg~V~IWdl~s  585 (792)
                      ....|+++++|+++++-..++.|++||.+ ++.+..+..      ....-..+++..+.. ++++. +.++.|.+++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            46899999999988887788899999965 666666532      122345666655543 34333 445567777764 


Q ss_pred             CCceeEEec-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----CCeeEEEEecCCCEEEEEEcCC
Q 003842          586 PGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAAEN  659 (792)
Q Consensus       586 ~~~~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~~~~~v~~sp~~~~lla~s~dg  659 (792)
                       +.....+. ........+++.+++. ++++....+.+.+++.. ++.+..+.     .....+++.+++..+++....+
T Consensus       102 -g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~  178 (279)
T d1q7fa_         102 -GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH  178 (279)
T ss_dssp             -SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             -ccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecccc
Confidence             45555543 3456678899998876 44455666778888765 45555542     2345677888876666666688


Q ss_pred             eEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeec--CCCceEEEEEeC
Q 003842          660 VVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC--NGNKFHSCVFHP  733 (792)
Q Consensus       660 ~I~i~D~~t~~~~~~l~--~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~--~~~~i~si~fsp  733 (792)
                      .|.+||.. ++.+..+.  +.......|+++++|+++++-..+  .|.+|+.. +   +.+..+..  .......+++.+
T Consensus       179 ~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G---~~~~~~~~~~~~~~p~~vav~~  253 (279)
T d1q7fa_         179 CVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDVALMD  253 (279)
T ss_dssp             EEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEEEEET
T ss_pred             ceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-C---CEEEEEeCCCCCCCEeEEEEeC
Confidence            99999975 45566653  244557899999999988776543  68999843 3   44444432  334678999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCC
Q 003842          734 TYPSLLVIGCYQSLELWNMSEN  755 (792)
Q Consensus       734 dg~~L~sgs~dg~I~IwDl~~~  755 (792)
                      +|. |+++..++.|++|.....
T Consensus       254 dG~-l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         254 DGS-VVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             TTE-EEEEETTTEEEEEECSCC
T ss_pred             CCc-EEEEeCCCeEEEEEeeee
Confidence            986 566678889999998654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=6.4e-08  Score=106.93  Aligned_cols=245  Identities=12%  Similarity=0.145  Sum_probs=145.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCE-----------------EEEEECCCCCeEEEEeC
Q 003842          513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLI-----------------TDVRFSPSMPRLATSSF  574 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V-----------------~~i~fspdg~~Lasgs~  574 (792)
                      ..+....|||||+.||... ++.|++.+..++..+.... +....|                 ..+.|+|||++||....
T Consensus       114 ~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         114 AKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             CCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             cccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence            3455678999999999875 6789999887766554433 221212                 46789999999998753


Q ss_pred             C-Cc---------------------------------EEEEeCCCCCceeEEe-----cccCCCeEEEEEcCCCCeEEEE
Q 003842          575 D-KT---------------------------------VRVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLICS  615 (792)
Q Consensus       575 D-g~---------------------------------V~IWdl~s~~~~i~~~-----~~h~~~V~sl~fspd~~~ll~s  615 (792)
                      | ..                                 +.|+|++++.......     ......+..+.|.+++..++..
T Consensus       193 D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~  272 (465)
T d1xfda1         193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTW  272 (465)
T ss_dssp             ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEE
T ss_pred             cccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEE
Confidence            2 22                                 3444444322211111     1122346788999987655544


Q ss_pred             EeCC---CcEEEEEcCCCeeEEEeeC--------CeeEEEEecCCCEEEE--EEc-C--CeEEEEECC------CCeEEE
Q 003842          616 CDGD---GEIRYWSINNGSCTRVFKG--------GTAQMRFQPHLGRYLA--AAA-E--NVVSILDAE------TQACRL  673 (792)
Q Consensus       616 gs~D---g~I~iwdl~~~~~~~~~~~--------~~~~v~~sp~~~~lla--~s~-d--g~I~i~D~~------t~~~~~  673 (792)
                      ...+   ..|.++|..++++...+..        ......|+++++.++.  ... +  +.++.+++.      .++.+.
T Consensus       273 ~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~  352 (465)
T d1xfda1         273 LNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ  352 (465)
T ss_dssp             EETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC
T ss_pred             EccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeE
Confidence            4444   3588899999987766532        1234678899886543  222 2  244444321      223333


Q ss_pred             EecCCCCCeEEE-EEcCCCCEEEE-EeCC---e--EEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC--
Q 003842          674 SLQGHTKPIDSV-CWDPSGELLAS-VSED---S--VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY--  744 (792)
Q Consensus       674 ~l~~h~~~V~sv-~~spdg~~Las-~s~d---~--I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d--  744 (792)
                      .+....-.|..+ .|+.+++.|+. +..+   .  |+-.++.......|+............+.|+|++++++..+..  
T Consensus       353 ~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~  432 (465)
T d1xfda1         353 SITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG  432 (465)
T ss_dssp             BSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred             EeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCC
Confidence            344334456665 68888876654 3332   2  4444444333333333222334567899999999998866554  


Q ss_pred             -CeEEEEECCCCcEE
Q 003842          745 -QSLELWNMSENKTM  758 (792)
Q Consensus       745 -g~I~IwDl~~~~~~  758 (792)
                       -.+.+++..+++.+
T Consensus       433 ~P~~~~~~~~~~~~~  447 (465)
T d1xfda1         433 VPMVTVHNTTDKKKM  447 (465)
T ss_dssp             SCCEEEEETTTCCEE
T ss_pred             CCeEEEEECCCCCEE
Confidence             36888888877766

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.90  E-value=1.2e-06  Score=91.44  Aligned_cols=227  Identities=11%  Similarity=0.094  Sum_probs=144.7

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeC----CCcEEEEEcCC
Q 003842          554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG----DGEIRYWSINN  629 (792)
Q Consensus       554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~----Dg~I~iwdl~~  629 (792)
                      ...+..++|.++|+++++-..++.|+.|+.+. +.....+.........|+|.++|..++ +...    .+.|...+...
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g-~~~~~~~~~~~~~p~gla~~~dG~l~v-a~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRPFVSHKANPAAIKIHKDGRLFV-CYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECSSSSEEEEEECTTSCEEE-EECTTSSSCCEEEEECTTS
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCC-CeEEEEEeCCCCCeeEEEECCCCCEEE-EecCCCccceeEEEEcCCC
Confidence            33456899999998777777889999998876 444455555666789999999986444 4322    23455555555


Q ss_pred             CeeEEEeeC-----CeeEEEEecCCCEEEEEEc------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 003842          630 GSCTRVFKG-----GTAQMRFQPHLGRYLAAAA------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS  698 (792)
Q Consensus       630 ~~~~~~~~~-----~~~~v~~sp~~~~lla~s~------dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s  698 (792)
                      .........     ....+.+.+++..+++...      .+.+..++........... .-...+.|+|+++++.|+.+.
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEE
T ss_pred             ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee-ccceeeeeeeccccceEEEec
Confidence            554443321     2456888898865544322      2346666655443322222 223457899999999766554


Q ss_pred             C-C-eEEEEECCCCCCcc-eE----EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc------ccC
Q 003842          699 E-D-SVRVWTVGSGSEGE-CV----HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT------AHE  764 (792)
Q Consensus       699 ~-d-~I~IwDl~s~~~~~-~i----~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~------~h~  764 (792)
                      . . .|+.||+....... ..    ............+++..+|++.++....+.|.+||. +++.+ .+.      ++.
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~  274 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHM  274 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCS
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcC
Confidence            3 3 89999986432211 11    111122234678999999998888788899999996 56655 322      234


Q ss_pred             CCeEEEEEeCCCCEEEEEeC
Q 003842          765 GLIAALAVSTETGYVASASH  784 (792)
Q Consensus       765 ~~V~sl~fspdg~~LaSgs~  784 (792)
                      ..+++++|.+++..+++...
T Consensus       275 ~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         275 LRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CBCCEEEECTTSCEEEEEEE
T ss_pred             ceeeeEEEeCCCCEEEEEcC
Confidence            56889999998877766544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.87  E-value=6e-07  Score=93.57  Aligned_cols=236  Identities=8%  Similarity=-0.016  Sum_probs=146.5

Q ss_pred             CCCCEEEEEECCCCCeEEEEeC-------CCcEEEEeCCCCCceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003842          553 HSSLITDVRFSPSMPRLATSSF-------DKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEI  622 (792)
Q Consensus       553 h~~~V~~i~fspdg~~Lasgs~-------Dg~V~IWdl~s~~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~Dg~I  622 (792)
                      .-.....++|.++|+++++...       +|.|..||..+.........   .....-..++|.++++.++ +++....|
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~-vad~~~~i   94 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADMRLGL   94 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE-EEETTTEE
T ss_pred             CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEE-EEECCCeE
Confidence            3344677899999987776433       46788898876332222111   1123456899999987665 45556678


Q ss_pred             EEEEcCCCeeEEEee---C----CeeEEEEecCCCEEEEEEc---------------CCeEEEEECCCCeEEEEecCCCC
Q 003842          623 RYWSINNGSCTRVFK---G----GTAQMRFQPHLGRYLAAAA---------------ENVVSILDAETQACRLSLQGHTK  680 (792)
Q Consensus       623 ~iwdl~~~~~~~~~~---~----~~~~v~~sp~~~~lla~s~---------------dg~I~i~D~~t~~~~~~l~~h~~  680 (792)
                      ..+|...........   +    ....+.+.+++..+++-..               .|.|+.++.+. +...... .-.
T Consensus        95 ~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~-~~~  172 (314)
T d1pjxa_          95 LVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDT-AFQ  172 (314)
T ss_dssp             EEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEE-EES
T ss_pred             EEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeC-Ccc
Confidence            888887654332211   1    2466889998776665322               23455555433 3222222 222


Q ss_pred             CeEEEEEcCCCC----EEEEE-eCC-eEEEEECCCCCCcce---EEEeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003842          681 PIDSVCWDPSGE----LLASV-SED-SVRVWTVGSGSEGEC---VHELSCN-GNKFHSCVFHPTYPSLLVIGCYQSLELW  750 (792)
Q Consensus       681 ~V~sv~~spdg~----~Las~-s~d-~I~IwDl~s~~~~~~---i~~~~~~-~~~i~si~fspdg~~L~sgs~dg~I~Iw  750 (792)
                      .-+.++|+++++    +|+++ +.. .|..||+........   +..+... ......+++..+|+.+++....+.|.+|
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence            346789988765    45444 444 888888764322111   1222221 2245789999999977777778899999


Q ss_pred             ECCCCcEE-EEcccCCCeEEEEEeCCCCE-EEEEeCCCcEEEe
Q 003842          751 NMSENKTM-TLTAHEGLIAALAVSTETGY-VASASHDKFVKLW  791 (792)
Q Consensus       751 Dl~~~~~~-~~~~h~~~V~sl~fspdg~~-LaSgs~DG~I~IW  791 (792)
                      |.+.+..+ .+......+++++|.+|++. +++.+.+|.|..+
T Consensus       253 dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         253 GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            99877654 45555677899999999974 5566667877654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.86  E-value=1.8e-07  Score=96.76  Aligned_cols=189  Identities=14%  Similarity=0.094  Sum_probs=130.9

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eEEe--ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003842          510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~-~~~l--~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      .....+.+++|++||+++++...++.+.+|+...... ...+  .........+++.++++++++.+.++.|..+|....
T Consensus        65 ~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~  144 (302)
T d2p4oa1          65 TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  144 (302)
T ss_dssp             ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             cCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence            3445689999999999999988888888888754322 2222  134566899999999999998888998988888763


Q ss_pred             CceeEEec---------ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE---e--eCCeeEEEEecCCCEE
Q 003842          587 GYSLRTFM---------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV---F--KGGTAQMRFQPHLGRY  652 (792)
Q Consensus       587 ~~~i~~~~---------~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~---~--~~~~~~v~~sp~~~~l  652 (792)
                      ...+....         .....+..+.+.  +..++++.+..+.|+.+++........   +  ......+++.++++.+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~  222 (302)
T d2p4oa1         145 SGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLY  222 (302)
T ss_dssp             EEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEE
T ss_pred             cceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEE
Confidence            32222221         112335566665  457888888899999999876543221   1  2334569999999877


Q ss_pred             EEEEcCCeEEEEECCCCeE-EEEecCCCCCeEEEEE---cCCCCEEEEEeCC
Q 003842          653 LAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCW---DPSGELLASVSED  700 (792)
Q Consensus       653 la~s~dg~I~i~D~~t~~~-~~~l~~h~~~V~sv~~---spdg~~Las~s~d  700 (792)
                      ++...++.|..|+...... +......-...++++|   .+|++.|+.++..
T Consensus       223 va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         223 GATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            7777789999998875432 3333444456889999   6688877765543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.83  E-value=3.1e-07  Score=92.45  Aligned_cols=231  Identities=8%  Similarity=0.046  Sum_probs=135.1

Q ss_pred             EEcCC--CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC-CC-----cEEEEeCCCCCcee
Q 003842          519 HFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DK-----TVRVWDADNPGYSL  590 (792)
Q Consensus       519 afspd--g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~-Dg-----~V~IWdl~s~~~~i  590 (792)
                      ..+||  |+.||..+ +|.|+++|+.+++.. .|..+.+.+...+|+|||+.||.... ++     .|.++++.+  ...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~--g~~   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN--GEI   80 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT--TEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC--Cce
Confidence            45788  99888775 568999999987754 56677788999999999999886643 22     366666664  233


Q ss_pred             EEecc-------cCCCeEEEEEcCCCCeEEEEEeCC-----CcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcC
Q 003842          591 RTFMG-------HSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE  658 (792)
Q Consensus       591 ~~~~~-------h~~~V~sl~fspd~~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~d  658 (792)
                      ..+..       .......+.|+|+++.++++...+     ..+..++...+........... ..+.+++..++.....
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  159 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPAT-HILFADGRRVIGRNTF  159 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCS-EEEEETTEEEEEESCS
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccc-eeeecCCCeEEEeecc
Confidence            33322       223456789999998777654332     2355666665555443333333 3344454444443321


Q ss_pred             ------------CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCC
Q 003842          659 ------------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGN  724 (792)
Q Consensus       659 ------------g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~  724 (792)
                                  ....++........... ..........++++..++.....+  .|.++|+..... +   .+... .
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~---~lt~~-~  233 (281)
T d1k32a2         160 ELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL-R---KHTSF-T  233 (281)
T ss_dssp             CCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC-E---ECCCC-C
T ss_pred             ccceeeeeccCCcceeeeeccccceeecc-CCccccceeeeeccccceecccccccceEEEeCCCCce-E---EeecC-C
Confidence                        11222222222222222 233445555666553333222222  688889876532 2   22221 1


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc
Q 003842          725 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT  761 (792)
Q Consensus       725 ~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~  761 (792)
                      ......|+|||+.|+.. .++.|+++|+.+++...+.
T Consensus       234 ~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~  269 (281)
T d1k32a2         234 DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIE  269 (281)
T ss_dssp             SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECC
T ss_pred             CcccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEec
Confidence            22334689999988764 4678999999999877543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.63  E-value=2.8e-05  Score=79.74  Aligned_cols=220  Identities=14%  Similarity=0.137  Sum_probs=146.2

Q ss_pred             EEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec
Q 003842          516 ICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM  594 (792)
Q Consensus       516 ~~lafspd-g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~  594 (792)
                      .+..|++. ++++.+--..+.|..||.++++... + .....+.++++.+++.++++ +.+| |.++|..++........
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~-~~~~~~~~i~~~~dg~l~va-~~~g-l~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-H-ALPFMGSALAKISDSKQLIA-SDDG-LFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E-ECSSCEEEEEEEETTEEEEE-ETTE-EEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-E-ECCCCcEEEEEecCCCEEEE-EeCc-cEEeecccceeeEEeee
Confidence            35668874 4455554467899999999876542 2 23456889999988866654 4554 88999987332211111


Q ss_pred             -c--cCCCeEEEEEcCCCCeEEEEEeC---CCcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEc-CCeEEEEE
Q 003842          595 -G--HSASVMSLDFHPNKDDLICSCDG---DGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILD  665 (792)
Q Consensus       595 -~--h~~~V~sl~fspd~~~ll~sgs~---Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~-dg~I~i~D  665 (792)
                       .  ....++++.+.++|..++.+...   .+.-.+|.+..++....+.  .....++|+++++.++.+.. .+.|..|+
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~  176 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVP  176 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEee
Confidence             1  12357889999998755543322   2345677777776655443  24566899999998776665 67899888


Q ss_pred             CCCC--------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe-CCC
Q 003842          666 AETQ--------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH-PTY  735 (792)
Q Consensus       666 ~~t~--------~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fs-pdg  735 (792)
                      +...        .....+.+.......++++.+|++.++.-.+ .|..||- .+   +.+..+......+++|+|- ++.
T Consensus       177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G---~~~~~i~lP~~~~T~~~FGG~d~  252 (295)
T d2ghsa1         177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPAFIGPDA  252 (295)
T ss_dssp             BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEEEESTTS
T ss_pred             ecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CC---cEeeEecCCCCceEEEEEeCCCC
Confidence            6421        1222333445567889999999988777666 8999995 34   5666666666679999996 677


Q ss_pred             CEEEEEEc
Q 003842          736 PSLLVIGC  743 (792)
Q Consensus       736 ~~L~sgs~  743 (792)
                      +.|++.+.
T Consensus       253 ~~LyvTta  260 (295)
T d2ghsa1         253 SRLLVTSA  260 (295)
T ss_dssp             CEEEEEEB
T ss_pred             CEEEEEEC
Confidence            77776643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.61  E-value=2.4e-06  Score=85.63  Aligned_cols=195  Identities=8%  Similarity=0.050  Sum_probs=106.5

Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeC-C-----CeEEEEECCCCceeEEec------cCCCCEEEEEECCCCCeEEEEeCC
Q 003842          508 VRASTSKVICCHFSSDGKLLATGGH-D-----KKAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSSFD  575 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs~-D-----g~I~vWdl~t~~~~~~l~------~h~~~V~~i~fspdg~~Lasgs~D  575 (792)
                      |..+.+.+...+|||||++||.... +     ..|.+++..+++......      ........+.|+|+++.|+.....
T Consensus        36 Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  115 (281)
T d1k32a2          36 IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAM  115 (281)
T ss_dssp             EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTT
T ss_pred             EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEcc
Confidence            4445666888999999999987642 2     247788887776554321      122345788999999988876432


Q ss_pred             ------CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC-----------cEEEEEcCCCeeEEEeeC
Q 003842          576 ------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----------EIRYWSINNGSCTRVFKG  638 (792)
Q Consensus       576 ------g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg-----------~I~iwdl~~~~~~~~~~~  638 (792)
                            ..+.+++...  .......  ......+ |.+++..+++....+.           ...++.............
T Consensus       116 ~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (281)
T d1k32a2         116 QPFSSMTCLYRVENDG--INFVPLN--LGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM  190 (281)
T ss_dssp             SSSTTCCEEEEEEGGG--TEEEECC--SCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred             CCCccceeeeeecCCC--ceeEEec--CCcccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCC
Confidence                  2244445443  2222222  2222223 3344444443332221           122222222222222222


Q ss_pred             --CeeEEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCC
Q 003842          639 --GTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS  711 (792)
Q Consensus       639 --~~~~v~~sp~~~~lla~s~---dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~  711 (792)
                        ......+.+  ..++....   ...|+++|+++.+...........  ...|+|||+.|+....+.|+++|+.+++
T Consensus       191 ~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~--~~~~SpDG~~I~f~~~~~l~~~d~~~g~  264 (281)
T d1k32a2         191 STHVSSPVIVG--HRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYY--PRHLNTDGRRILFSKGGSIYIFNPDTEK  264 (281)
T ss_dssp             SSCCEEEEEET--TEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSC--EEEEEESSSCEEEEETTEEEEECTTTCC
T ss_pred             ccccceeeeec--cccceecccccccceEEEeCCCCceEEeecCCCcc--cccCcCCCCEEEEEeCCEEEEEECCCCC
Confidence              222233333  34444443   347888898877654432222223  3468999999888776689999998763

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.51  E-value=5.9e-05  Score=77.16  Aligned_cols=216  Identities=8%  Similarity=0.039  Sum_probs=138.5

Q ss_pred             EEEEECCCCC-eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe
Q 003842          558 TDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF  636 (792)
Q Consensus       558 ~~i~fspdg~-~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~  636 (792)
                      ....|.+... ++++--..+.|..||..++.  ...+ .....+.++++.+++. ++++ +. ..|.++|..+++.....
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~--~~~~-~~~~~~~~i~~~~dg~-l~va-~~-~gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGR--KTVH-ALPFMGSALAKISDSK-QLIA-SD-DGLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTE--EEEE-ECSSCEEEEEEEETTE-EEEE-ET-TEEEEEETTTCCEEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCe--EEEE-ECCCCcEEEEEecCCC-EEEE-Ee-CccEEeecccceeeEEe
Confidence            3456776444 44444467789999988632  2323 2356788999988864 4434 33 46999999988765543


Q ss_pred             eC-------CeeEEEEecCCCEEEEEEc----CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEE
Q 003842          637 KG-------GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVR  703 (792)
Q Consensus       637 ~~-------~~~~v~~sp~~~~lla~s~----dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~  703 (792)
                      ..       ....+.+.+++..+++...    .+.-.+|.+..++....+.. -..-+.++|+++++.++.+...  .|.
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~  173 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLM  173 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceee
Confidence            21       2456778888776665443    23445666666655444432 2345789999999977666544  888


Q ss_pred             EEECCCCC-----CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe-CCC
Q 003842          704 VWTVGSGS-----EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS-TET  776 (792)
Q Consensus       704 IwDl~s~~-----~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fs-pdg  776 (792)
                      .|++....     .......+.........+++..+|++.++.-..+.|..||.. ++.+ .+.--...+++++|- +|.
T Consensus       174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i~lP~~~~T~~~FGG~d~  252 (295)
T d2ghsa1         174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFIGPDA  252 (295)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEESTTS
T ss_pred             EeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEeeEecCCCCceEEEEEeCCCC
Confidence            88875321     112223334455668899999999977777777899999965 5555 444334579999996 566


Q ss_pred             CEEEE
Q 003842          777 GYVAS  781 (792)
Q Consensus       777 ~~LaS  781 (792)
                      +.|+.
T Consensus       253 ~~Lyv  257 (295)
T d2ghsa1         253 SRLLV  257 (295)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            55543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.35  E-value=5.8e-05  Score=79.43  Aligned_cols=268  Identities=10%  Similarity=0.043  Sum_probs=148.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCC-----------eEEEEECCCCceeE--Ee-ccCCCCEEEEEECCCCCeEEEEeCC-CcE
Q 003842          514 KVICCHFSSDGKLLATGGHDK-----------KAVLWHTDTLKSKT--NL-EEHSSLITDVRFSPSMPRLATSSFD-KTV  578 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg-----------~I~vWdl~t~~~~~--~l-~~h~~~V~~i~fspdg~~Lasgs~D-g~V  578 (792)
                      .+...+...+|++++.|+.+.           .+.+||..++.-..  .. ..+.......++.+++++++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            344555667899888888531           37799998765432  22 2344445567889999999988765 579


Q ss_pred             EEEeCCCCCceeEEecc--cCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcCCCeeEEEeeC------------
Q 003842          579 RVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFKG------------  638 (792)
Q Consensus       579 ~IWdl~s~~~~i~~~~~--h~~~V~sl~fspd~~~ll~sgs~D------g~I~iwdl~~~~~~~~~~~------------  638 (792)
                      .+||..+...  .....  ....-.+.+..+++.. ++.++.+      ..+.+||..+.+....-..            
T Consensus       101 ~~yd~~~~~w--~~~~~~~~~r~~~~~~~~~dG~v-~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~  177 (387)
T d1k3ia3         101 SLYDSSSDSW--IPGPDMQVARGYQSSATMSDGRV-FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG  177 (387)
T ss_dssp             EEEEGGGTEE--EECCCCSSCCSSCEEEECTTSCE-EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred             eEecCccCcc--cccccccccccccceeeecCCce-eeeccccccccccceeeeecCCCCceeecCCCcccccccccccc
Confidence            9999987322  22211  1122335666777764 4455432      4689999988765432110            


Q ss_pred             -----CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec--C----CCC--CeEEEEE-cCCCCEEEEEeCC----
Q 003842          639 -----GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--G----HTK--PIDSVCW-DPSGELLASVSED----  700 (792)
Q Consensus       639 -----~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~--~----h~~--~V~sv~~-spdg~~Las~s~d----  700 (792)
                           ....+...+++..++.+..++.+.++|..+........  .    +..  .-.++.+ ..++++++.++..    
T Consensus       178 ~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~  257 (387)
T d1k3ia3         178 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD  257 (387)
T ss_dssp             GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred             eeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCC
Confidence                 01112233445555556666777888877765432211  0    111  1122333 2366666666521    


Q ss_pred             -----eEEEEECCCCCCcceEEEeec---CCCceEEEEEeCCCCEEEEEEcC-----------CeEEEEECCCCcEEEEc
Q 003842          701 -----SVRVWTVGSGSEGECVHELSC---NGNKFHSCVFHPTYPSLLVIGCY-----------QSLELWNMSENKTMTLT  761 (792)
Q Consensus       701 -----~I~IwDl~s~~~~~~i~~~~~---~~~~i~si~fspdg~~L~sgs~d-----------g~I~IwDl~~~~~~~~~  761 (792)
                           ...++++..............   ......+.+..++++.+++|+.+           ..+.+||..+.+...+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~  337 (387)
T d1k3ia3         258 SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN  337 (387)
T ss_dssp             SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred             CcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECC
Confidence                 234444433221111111111   12223455667899988888853           15789999888765443


Q ss_pred             ccCC---CeEEEEEeCCCCEEEEEeC
Q 003842          762 AHEG---LIAALAVSTETGYVASASH  784 (792)
Q Consensus       762 ~h~~---~V~sl~fspdg~~LaSgs~  784 (792)
                      ....   .-....+.+||++|+.|+.
T Consensus       338 ~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         338 PNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCcccceEEEEECCCCEEEEEeCC
Confidence            2111   1123445789999999884

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=0.0013  Score=65.75  Aligned_cols=241  Identities=9%  Similarity=-0.003  Sum_probs=151.9

Q ss_pred             EEEEEeCCCeEEEEECCCCc-----eeEEeccCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCCCceeEEecccCCC
Q 003842          526 LLATGGHDKKAVLWHTDTLK-----SKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSAS  599 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~-----~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~V~IWdl~s~~~~i~~~~~h~~~  599 (792)
                      +|+.+. .+.|+-.+++...     ....+..+...+..|+|....+.|+.+ ..++.|+..+++. ......+......
T Consensus         3 fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g-~~~~~v~~~~~~~   80 (263)
T d1npea_           3 HLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTIIRQDLGS   80 (263)
T ss_dssp             EEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEECTTCCC
T ss_pred             EEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEccc-CCcEEEEEecccc
Confidence            444443 3467777765432     122344455568889999877766655 4567788888875 3333333333456


Q ss_pred             eEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEE
Q 003842          600 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACRL  673 (792)
Q Consensus       600 V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~d---g~I~i~D~~t~~~~~  673 (792)
                      +.+|++..-+..++++-...+.|.+.++....+...+.   .....+++.|..++++.....   ..|...++.......
T Consensus        81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~  160 (263)
T d1npea_          81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI  160 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred             ccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee
Confidence            88999987777787777778899999998665443333   345678899999988876543   246656666544333


Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE
Q 003842          674 SLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELW  750 (792)
Q Consensus       674 ~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~Iw  750 (792)
                      .....-.....|++++.++.|+.+...  .|...|+....   ....+.. ......+++.  +.+|+... ..+.|...
T Consensus       161 i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~---~~~v~~~-~~~P~~lav~--~~~lYwtd~~~~~I~~~  234 (263)
T d1npea_         161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG---RRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAM  234 (263)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE---EEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             eeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC---eEEEECC-CCCcEEEEEE--CCEEEEEECCCCEEEEE
Confidence            333344567899999888877666544  88888886431   2122222 2234567765  45676665 44689999


Q ss_pred             ECCCCcEEEEc--ccCCCeEEEEEeC
Q 003842          751 NMSENKTMTLT--AHEGLIAALAVST  774 (792)
Q Consensus       751 Dl~~~~~~~~~--~h~~~V~sl~fsp  774 (792)
                      |..+++.....  .......++++.+
T Consensus       235 ~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         235 DLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             ETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             ECCCCccceEECCCCCCCcceEEEeC
Confidence            99888766333  2333455565544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=0.0035  Score=62.44  Aligned_cols=228  Identities=9%  Similarity=-0.033  Sum_probs=145.5

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCC--cee-EEecccCCCeE
Q 003842          526 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPG--YSL-RTFMGHSASVM  601 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs-~Dg~V~IWdl~s~~--~~i-~~~~~h~~~V~  601 (792)
                      +|+.+. ...|+..++++......+ .....+..|+|.+..+.|+-.. .++.|+..+++...  ... ..+......+.
T Consensus         3 fLl~s~-~~~I~~~~l~~~~~~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~   80 (266)
T d1ijqa1           3 YLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (266)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEEC-CCeEEEEECCCCcceeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence            344443 335888899876544444 3556688999998777766654 56667777765311  112 22233335567


Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEec
Q 003842          602 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQ  676 (792)
Q Consensus       602 sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~--dg~I~i~D~~t~~~~~~l~  676 (792)
                      +|++.+.+..+.++-...+.|.+.++....+...+..   ....+++.|..++++.+..  .+.|...++..........
T Consensus        81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~  160 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  160 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc
Confidence            8888877788888878888999999987665544432   4567888998888887654  4567777876655444444


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 003842          677 GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS  753 (792)
Q Consensus       677 ~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~  753 (792)
                      ..-.....+++++.++.|+.+...  .|...++.... ...+............+++.  +.+|+.+. .++.|+..+..
T Consensus       161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~-~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~  237 (266)
T d1ijqa1         161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL  237 (266)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred             cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC-EEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECC
Confidence            444667899999988877766544  88888986432 23333323223345667766  34566665 45688888877


Q ss_pred             CCcEE
Q 003842          754 ENKTM  758 (792)
Q Consensus       754 ~~~~~  758 (792)
                      ++...
T Consensus       238 ~g~~~  242 (266)
T d1ijqa1         238 TGSDV  242 (266)
T ss_dssp             TCCCC
T ss_pred             CCcce
Confidence            76544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.07  E-value=0.0059  Score=60.85  Aligned_cols=247  Identities=10%  Similarity=0.164  Sum_probs=153.2

Q ss_pred             CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeE
Q 003842          533 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDL  612 (792)
Q Consensus       533 Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~l  612 (792)
                      ...|.|.|+.+.....+-.-.   --+.-.+|..+.||.-+ ..++.|||+++ +..++.+.- ...|.-=.|..+. .|
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~---AdsAIMhP~~~IiALra-g~~LQiFnlet-K~klks~~~-~e~VvfWkWis~~-~L  116 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHTM-TDDVTFWKWISLN-TV  116 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECC---CSEEEECSSSSEEEEEE-TTEEEEEETTT-TEEEEEEEC-SSCCCEEEESSSS-EE
T ss_pred             CceEEEEECCCCCcceecccc---hhhhhcCCCCcEEEEec-CCeEEEEehhH-hhhhceEEc-CCCcEEEEecCCC-EE
Confidence            347889999876543222111   12334678887777666 56799999998 566666653 3456555666543 33


Q ss_pred             EEEEeCCCcEEEEEcCCC-eeEEEeeCC-------eeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEecC
Q 003842          613 ICSCDGDGEIRYWSINNG-SCTRVFKGG-------TAQMRFQPHLGRYLAAAA-------ENVVSILDAETQACRLSLQG  677 (792)
Q Consensus       613 l~sgs~Dg~I~iwdl~~~-~~~~~~~~~-------~~~v~~sp~~~~lla~s~-------dg~I~i~D~~t~~~~~~l~~  677 (792)
                      . ..+ +..|+-|+++.. ...+.|+.+       +...+.+++.++++..+-       .|.+.+|..+.. .-..+++
T Consensus       117 ~-lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieG  193 (327)
T d1utca2         117 A-LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEG  193 (327)
T ss_dssp             E-EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECC
T ss_pred             E-EEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccc
Confidence            3 222 678999999543 355555432       334567778888776543       367889988765 3344566


Q ss_pred             CCCCeEEEEEcCCC---CEEEEEeC---C-eEEEEECCCCCCc-----ceEEEee-c---CCCceEEEEEeCCCCEEEEE
Q 003842          678 HTKPIDSVCWDPSG---ELLASVSE---D-SVRVWTVGSGSEG-----ECVHELS-C---NGNKFHSCVFHPTYPSLLVI  741 (792)
Q Consensus       678 h~~~V~sv~~spdg---~~Las~s~---d-~I~IwDl~s~~~~-----~~i~~~~-~---~~~~i~si~fspdg~~L~sg  741 (792)
                      |......+.+..+.   .+|+.+..   . .+.|.++......     +....+. .   ...-..++.+++....++..
T Consensus       194 haa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyvi  273 (327)
T d1utca2         194 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  273 (327)
T ss_dssp             SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred             eeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEE
Confidence            65444433332211   13333332   2 7889998764221     1112221 1   13446788899999999999


Q ss_pred             EcCCeEEEEECCCCcEEEE-cccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003842          742 GCYQSLELWNMSENKTMTL-TAHEGLIAALAVSTETGYVASASHDKFVK  789 (792)
Q Consensus       742 s~dg~I~IwDl~~~~~~~~-~~h~~~V~sl~fspdg~~LaSgs~DG~I~  789 (792)
                      +..|.|++||++++.++.. .-....|...+-..+..-+++...+|.|.
T Consensus       274 TK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         274 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             ecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            9999999999999998843 34456666566566655666777888764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.06  E-value=0.00026  Score=74.46  Aligned_cols=255  Identities=9%  Similarity=0.028  Sum_probs=152.1

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEeccC---------------------------------------CCCE--EEEEECC
Q 003842          526 LLATGGHDKKAVLWHTDTLKSKTNLEEH---------------------------------------SSLI--TDVRFSP  564 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h---------------------------------------~~~V--~~i~fsp  564 (792)
                      .+.+|+..|.|+||-+.+++.++.+...                                       .+..  ..+.|..
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td   94 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   94 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccC
Confidence            3567788889999888877777665310                                       0011  1344443


Q ss_pred             ---CCCeEEEEe-CCCcEEEEeCCCCCceeEEec-ccCCCeEEEEEcCCCCe-EEEEEeCC------------------C
Q 003842          565 ---SMPRLATSS-FDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDD-LICSCDGD------------------G  620 (792)
Q Consensus       565 ---dg~~Lasgs-~Dg~V~IWdl~s~~~~i~~~~-~h~~~V~sl~fspd~~~-ll~sgs~D------------------g  620 (792)
                         ||++|++.. .+.+|.+.|+++ .++...+. .....+..+...++.+. +++..+.+                  +
T Consensus        95 GtyDGrylFVNDkan~RVAvIdl~~-fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          95 GKYDGRFLFMNDKANTRVARVRCDV-MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTT-TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             CccceeEEEEEcCCCceEEEEECcc-eeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence               677776665 678899999987 44433222 23455677766543322 33333331                  3


Q ss_pred             cEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcCC---------------eE----------------------
Q 003842          621 EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAEN---------------VV----------------------  661 (792)
Q Consensus       621 ~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~dg---------------~I----------------------  661 (792)
                      .+.++|..+.+....+.  +....+.++++++++++.+.+.               .+                      
T Consensus       174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing  253 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  253 (459)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence            36788999888776553  4556799999999999887531               12                      


Q ss_pred             -EEEECCCC---eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC--------CCcceEEEeecCCCceE
Q 003842          662 -SILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG--------SEGECVHELSCNGNKFH  727 (792)
Q Consensus       662 -~i~D~~t~---~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~--------~~~~~i~~~~~~~~~i~  727 (792)
                       .+.|.++.   ..++.+... .....+.++|||+++++++.-  ++.|+|++..        ....++..-...+-...
T Consensus       254 V~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPL  332 (459)
T d1fwxa2         254 VKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL  332 (459)
T ss_dssp             EEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEE
T ss_pred             ceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcc
Confidence             33343321   112222111 224568899999999988865  9999999632        11222322223344556


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECCCC----------cEE-EEcccCCCeEEE------EEeCCCCEEEEEe
Q 003842          728 SCVFHPTYPSLLVIGCYQSLELWNMSEN----------KTM-TLTAHEGLIAAL------AVSTETGYVASAS  783 (792)
Q Consensus       728 si~fspdg~~L~sgs~dg~I~IwDl~~~----------~~~-~~~~h~~~V~sl------~fspdg~~LaSgs  783 (792)
                      ..+|...|....+.--|..|.-|++...          ..+ .+..|-. +-.+      ...|||+||++.+
T Consensus       333 ht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         333 HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEE
T ss_pred             ccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccC-CCCCccCcCCcCCCCCCEEEEec
Confidence            7788888865555567889999998432          233 3333322 1122      2367899998875

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=0.0026  Score=63.30  Aligned_cols=199  Identities=11%  Similarity=0.017  Sum_probs=131.4

Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEE-EEeCCCcEEEEeCCC
Q 003842          508 VRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVWDADN  585 (792)
Q Consensus       508 l~~H~~~V~~lafspdg~~Lasgs-~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~La-sgs~Dg~V~IWdl~s  585 (792)
                      +..+...|.+|+|+...+.|+... .++.|+..+++.......+......+.+|++..-+..|+ +-...+.|.+.+++.
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            333444588899998777776654 567899999887666655655556789999987555555 445677899999986


Q ss_pred             CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc--EEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEE-cCC
Q 003842          586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA-AEN  659 (792)
Q Consensus       586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~--I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s-~dg  659 (792)
                      .. ....+......+..|+++|....++.+-...+.  |..-++...........   ....+++.+..++++.+. ..+
T Consensus       111 ~~-~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~  189 (263)
T d1npea_         111 TQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH  189 (263)
T ss_dssp             CS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ce-EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCC
Confidence            33 222333334678999999998877766544334  44445654443333332   345788988888887775 467


Q ss_pred             eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCC
Q 003842          660 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSG  710 (792)
Q Consensus       660 ~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s-~d-~I~IwDl~s~  710 (792)
                      .|...|+........+.+... ..+|++.  +.+|+... .. .|...|..++
T Consensus       190 ~I~~~~~~g~~~~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         190 RAECLNPAQPGRRKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             EEEEEETTEEEEEEEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEEECCCCCeEEEECCCCC-cEEEEEE--CCEEEEEECCCCEEEEEECCCC
Confidence            999999987655544544333 4577775  34444443 43 8888888766

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=0.0082  Score=59.63  Aligned_cols=216  Identities=10%  Similarity=0.022  Sum_probs=134.8

Q ss_pred             eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----EEEee---CCe
Q 003842          568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFK---GGT  640 (792)
Q Consensus       568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~---~~~  640 (792)
                      +|+.+... .|+..++++..  ...+......+.+|+|++.++.++++-..++.|+..++.....    ...+.   ...
T Consensus         3 fLl~s~~~-~I~~~~l~~~~--~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p   79 (266)
T d1ijqa1           3 YLFFTNRH-EVRKMTLDRSE--YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (266)
T ss_dssp             EEEEECBS-SEEEEETTSCC--CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEECCC-eEEEEECCCCc--ceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence            34444433 48888998632  2333345567889999998888877766777788777754221    11222   245


Q ss_pred             eEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceE
Q 003842          641 AQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECV  716 (792)
Q Consensus       641 ~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~~~~~~i  716 (792)
                      ..+++.+.++.++.+.. .+.|.++++........+.........++++|...+|+....+   .|...++...   ...
T Consensus        80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs---~~~  156 (266)
T d1ijqa1          80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY  156 (266)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred             ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC---cee
Confidence            66889888888877765 5789999998877666566556678899999976666555433   5666665432   122


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEEEE-c--ccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003842          717 HELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTMTL-T--AHEGLIAALAVSTETGYVASASHDKFVKL  790 (792)
Q Consensus       717 ~~~~~~~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~~~~~~~~-~--~h~~~V~sl~fspdg~~LaSgs~DG~I~I  790 (792)
                      ......-.....+++.+.++.|+.+.. .+.|...|+.......+ .  .......+|++.. +.++.+-..++.|+.
T Consensus       157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~I~~  233 (266)
T d1ijqa1         157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFS  233 (266)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC-CEEEEEECCCCeEEE
Confidence            222233456789999998888888754 46999999977654322 2  2223466777762 333333334566543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.86  E-value=0.0038  Score=66.74  Aligned_cols=239  Identities=8%  Similarity=0.036  Sum_probs=132.8

Q ss_pred             CeEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC-------------
Q 003842          514 KVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-------------  575 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs-----~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D-------------  575 (792)
                      .+..+++|||+++||.+-     ....|+++|+++++.+...-. ......++|.+|+..|+....|             
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            345667899999988643     234699999999987653211 1122568899999977655432             


Q ss_pred             ---CcEEEEeCCCCCce-eEEeccc--CCCeEEEEEcCCCCeEEEEEeC--CCc--EEEEEcCCCe--------eEEEee
Q 003842          576 ---KTVRVWDADNPGYS-LRTFMGH--SASVMSLDFHPNKDDLICSCDG--DGE--IRYWSINNGS--------CTRVFK  637 (792)
Q Consensus       576 ---g~V~IWdl~s~~~~-i~~~~~h--~~~V~sl~fspd~~~ll~sgs~--Dg~--I~iwdl~~~~--------~~~~~~  637 (792)
                         ..|.+|.+.+.... ...+...  ...+..+..+.++.++++....  +..  +.+.|+....        ....+.
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  284 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence               25888888764322 2333332  3456677888998887765542  333  4444544321        112222


Q ss_pred             CCeeEEE-EecCCCEEEEEEc----CCeEEEEECCCCeE---EEEecCCCCCeEEEEEcCCCCEEEEE-eCC---eEEEE
Q 003842          638 GGTAQMR-FQPHLGRYLAAAA----ENVVSILDAETQAC---RLSLQGHTKPIDSVCWDPSGELLASV-SED---SVRVW  705 (792)
Q Consensus       638 ~~~~~v~-~sp~~~~lla~s~----dg~I~i~D~~t~~~---~~~l~~h~~~V~sv~~spdg~~Las~-s~d---~I~Iw  705 (792)
                      ....... +...+..++..+.    ++.|...++.....   ...+..+...+..-.+...+.+|+.. -.+   .|+++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~  364 (430)
T d1qfma1         285 NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH  364 (430)
T ss_dssp             SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred             ccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEE
Confidence            2111111 2223444544443    45777777765421   22233344545444444445555544 344   79999


Q ss_pred             ECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCc
Q 003842          706 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENK  756 (792)
Q Consensus       706 Dl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d----g~I~IwDl~~~~  756 (792)
                      ++..+.   .........+.+..+...++...+...-.+    .+++.||+.+++
T Consensus       365 ~~~~~~---~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         365 DLATGA---LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             ETTTCC---EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ECCCCc---EEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            997753   223333334455555555666555544333    589999998875

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.79  E-value=0.0012  Score=73.70  Aligned_cols=259  Identities=10%  Similarity=0.071  Sum_probs=147.0

Q ss_pred             EEEEEe-CCCeEEEEEC-CCCceeEEeccCCC----C-------EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003842          526 LLATGG-HDKKAVLWHT-DTLKSKTNLEEHSS----L-------ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT  592 (792)
Q Consensus       526 ~Lasgs-~Dg~I~vWdl-~t~~~~~~l~~h~~----~-------V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~  592 (792)
                      .|++++ .++.|+..|. ++|+.+-++.....    .       -..+++.  +..|+.++.||.|.-.|.++ ++.+..
T Consensus        64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~t-G~~~w~  140 (571)
T d2ad6a1          64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKT-GKINWE  140 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTT-CCEEEE
T ss_pred             EEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhh-hhhhcc
Confidence            444444 4688888887 47888877642100    0       0123332  34788889999999999998 444433


Q ss_pred             eccc----CCCeEEEEEcCCCCeEEEEEe------CCCcEEEEEcCCCeeEEEeeCC-----------------------
Q 003842          593 FMGH----SASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGG-----------------------  639 (792)
Q Consensus       593 ~~~h----~~~V~sl~fspd~~~ll~sgs------~Dg~I~iwdl~~~~~~~~~~~~-----------------------  639 (792)
                      +...    ...++.--...+ ..++ .+.      .+|.|+.||+++++.+..+...                       
T Consensus       141 ~~~~~~~~~~~~t~~p~v~~-~~vi-vg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~  218 (571)
T d2ad6a1         141 VEVCDPKVGSTLTQAPFVAK-DTVL-MGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG  218 (571)
T ss_dssp             EECCCGGGTCBCCSCCEEET-TEEE-EECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred             ccccccccccceeecCeEeC-CeEE-EeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccc
Confidence            3211    111111111112 2333 443      2688999999999998765321                       


Q ss_pred             -----------------e-eEEEEecCCCEEEEEEc----------------CCeEEEEECCCCeEEEEecCCCCCe---
Q 003842          640 -----------------T-AQMRFQPHLGRYLAAAA----------------ENVVSILDAETQACRLSLQGHTKPI---  682 (792)
Q Consensus       640 -----------------~-~~v~~sp~~~~lla~s~----------------dg~I~i~D~~t~~~~~~l~~h~~~V---  682 (792)
                                       + ....+.+..+.++.+..                ...|...|.++++.+..+......+   
T Consensus       219 ~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~  298 (571)
T d2ad6a1         219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF  298 (571)
T ss_dssp             HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred             ccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccc
Confidence                             0 12466777777776655                2468889999999998877532221   


Q ss_pred             ------EEEEEcCCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeecC------------------------------
Q 003842          683 ------DSVCWDPSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCN------------------------------  722 (792)
Q Consensus       683 ------~sv~~spdg~---~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~------------------------------  722 (792)
                            ....+..+++   .++..+.+ .++++|..+++.   +......                              
T Consensus       299 D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~---i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g  375 (571)
T d2ad6a1         299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL---IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKG  375 (571)
T ss_dssp             CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE---EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCE
T ss_pred             ccccccceeeeeccCccccceeeccccceEEEEecCCCcE---eeeeccCCcccccccccccccccccCcccccccccCc
Confidence                  1122223443   34555555 888888877742   2110000                              


Q ss_pred             ---------CCceEEEEEeCCCCEEEEEEcC-------------------------------------CeEEEEECCCCc
Q 003842          723 ---------GNKFHSCVFHPTYPSLLVIGCY-------------------------------------QSLELWNMSENK  756 (792)
Q Consensus       723 ---------~~~i~si~fspdg~~L~sgs~d-------------------------------------g~I~IwDl~~~~  756 (792)
                               ...-...+++|+...+++...+                                     |.|.-+|+.+++
T Consensus       376 ~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~  455 (571)
T d2ad6a1         376 TNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK  455 (571)
T ss_dssp             EEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC
T ss_pred             eEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCc
Confidence                     0001235677777766654432                                     357778888888


Q ss_pred             EEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          757 TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       757 ~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      .+-.........+-.++..+.+|++++.||.++-+|
T Consensus       456 ~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~D  491 (571)
T d2ad6a1         456 AKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD  491 (571)
T ss_dssp             EEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             eeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEE
Confidence            773332222222222233466788889999998765

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.69  E-value=0.0053  Score=68.15  Aligned_cols=251  Identities=10%  Similarity=0.029  Sum_probs=138.2

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEeccCC----CCEEEEEECCCCCeEEEEe------CCCcEEEEeCCCCCceeEEec
Q 003842          525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITDVRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRTFM  594 (792)
Q Consensus       525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~----~~V~~i~fspdg~~Lasgs------~Dg~V~IWdl~s~~~~i~~~~  594 (792)
                      ..|+.++.||.|...|.++++.+.......    ..++.--...++ .++++.      .+|.|+-||+.+ ++.+-.+.
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~T-G~~~W~~~  193 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKT-GELKWRAF  193 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTT-CCEEEEEE
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCC-CcEEEEEe
Confidence            367788889999999999998876654211    111111111133 444444      378899999998 44444332


Q ss_pred             cc-------------------------------------CCCe-EEEEEcCCCCeEEEEEeC----------------CC
Q 003842          595 GH-------------------------------------SASV-MSLDFHPNKDDLICSCDG----------------DG  620 (792)
Q Consensus       595 ~h-------------------------------------~~~V-~sl~fspd~~~ll~sgs~----------------Dg  620 (792)
                      ..                                     ...+ ..+++.+....+ +.+..                ..
T Consensus       194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~-y~~tg~~~p~~~~~r~g~n~~s~  272 (571)
T d2ad6a1         194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLF-YYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEE-EEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCee-eeecccccCcccccccccccccc
Confidence            11                                     0112 124555554433 33322                24


Q ss_pred             cEEEEEcCCCeeEEEeeCC------------eeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEecCCC------
Q 003842          621 EIRYWSINNGSCTRVFKGG------------TAQMRFQPHLG---RYLAAAAENVVSILDAETQACRLSLQGHT------  679 (792)
Q Consensus       621 ~I~iwdl~~~~~~~~~~~~------------~~~v~~sp~~~---~lla~s~dg~I~i~D~~t~~~~~~l~~h~------  679 (792)
                      .|...|+++++.+..+...            .....+..+++   .++.++.+|.++++|.++++.+.......      
T Consensus       273 svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~  352 (571)
T d2ad6a1         273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             ceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccc
Confidence            6788899999988766421            11122333443   34566779999999999998875432110      


Q ss_pred             -------------------------------C--CeEEEEEcCCCCEEEEEeCC-e------------------------
Q 003842          680 -------------------------------K--PIDSVCWDPSGELLASVSED-S------------------------  701 (792)
Q Consensus       680 -------------------------------~--~V~sv~~spdg~~Las~s~d-~------------------------  701 (792)
                                                     +  .-...+|+|+..+++....+ .                        
T Consensus       353 ~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (571)
T d2ad6a1         353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeec
Confidence                                           0  00125677777776665544 1                        


Q ss_pred             -------------EEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCe-
Q 003842          702 -------------VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLI-  767 (792)
Q Consensus       702 -------------I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V-  767 (792)
                                   |.-+|+.++   +.+....... ...+-.+.-.+..+++++.|+.++.||.++++.+-...-...+ 
T Consensus       433 ~~~~~~~~~~~G~l~AiD~~TG---~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~  508 (571)
T d2ad6a1         433 PGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI  508 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTC---CEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             cccCCcccCCcccEEEeccCCC---ceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCce
Confidence                         333333333   2222111111 1111112224667888999999999999999998333222222 


Q ss_pred             -EEEEEeCCCC-EEEEE
Q 003842          768 -AALAVSTETG-YVASA  782 (792)
Q Consensus       768 -~sl~fspdg~-~LaSg  782 (792)
                       .-+.|..||+ ||++.
T Consensus       509 a~P~ty~~dGkqYi~v~  525 (571)
T d2ad6a1         509 GSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             SCCEEEEETTEEEEEEE
T ss_pred             ecceEEEECCEEEEEEE
Confidence             2255666786 55443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.66  E-value=0.004  Score=69.59  Aligned_cols=263  Identities=12%  Similarity=0.092  Sum_probs=150.5

Q ss_pred             CCCEEEEEeCCCeEEEEEC-CCCceeEEeccCC-----------CCEEEEEECCC----CCeEEEEeCCCcEEEEeCCCC
Q 003842          523 DGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHS-----------SLITDVRFSPS----MPRLATSSFDKTVRVWDADNP  586 (792)
Q Consensus       523 dg~~Lasgs~Dg~I~vWdl-~t~~~~~~l~~h~-----------~~V~~i~fspd----g~~Lasgs~Dg~V~IWdl~s~  586 (792)
                      +|.++++++.++.|...|. ++|+.+-++....           ...+.+++.++    ..+|+.++.|+.|.-.|.++ 
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~t-  140 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET-  140 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT-
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeecccc-
Confidence            3433344444567777776 5777776654211           01123444332    34688999999999999998 


Q ss_pred             CceeEEeccc---C-CCeEE-EEEcCCCCeEEEEEeC------CCcEEEEEcCCCeeEEEeeCC----------------
Q 003842          587 GYSLRTFMGH---S-ASVMS-LDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFKGG----------------  639 (792)
Q Consensus       587 ~~~i~~~~~h---~-~~V~s-l~fspd~~~ll~sgs~------Dg~I~iwdl~~~~~~~~~~~~----------------  639 (792)
                      ++.+..+...   . ..++. -.+.  ++. ++.+..      .|.|+-||+++|+.+..+...                
T Consensus       141 G~~~w~~~~~d~~~~~~~t~~P~v~--~~~-vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~  217 (596)
T d1w6sa_         141 GETVWKVENSDIKVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN  217 (596)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred             CceeccccccccccccccccCCcEE--CCe-EEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccc
Confidence            5555444311   1 11111 1122  122 334432      489999999999998775321                


Q ss_pred             -------------------------eeEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEecC-
Q 003842          640 -------------------------TAQMRFQPHLGRYLAAAAE----------------NVVSILDAETQACRLSLQG-  677 (792)
Q Consensus       640 -------------------------~~~v~~sp~~~~lla~s~d----------------g~I~i~D~~t~~~~~~l~~-  677 (792)
                                               -..+.+.+..+.++.+..+                ..|...|+++++.+..+.. 
T Consensus       218 ~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~  297 (596)
T d1w6sa_         218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT  297 (596)
T ss_dssp             GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred             ccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccce
Confidence                                     0124667777777776543                3588899999999887754 


Q ss_pred             -CCC-------CeEEEE-EcCCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeecC----------------------
Q 003842          678 -HTK-------PIDSVC-WDPSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCN----------------------  722 (792)
Q Consensus       678 -h~~-------~V~sv~-~spdg~---~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~----------------------  722 (792)
                       |..       ....+. ...+|+   .++....+ .+.++|..+++   .+......                      
T Consensus       298 ~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~---~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~  374 (596)
T d1w6sa_         298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA---LVSANKLDDTVNVFKSVDLKTGQPVRDPEY  374 (596)
T ss_dssp             TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCCEEECGGG
T ss_pred             eccccCCccccceeeeeccccccccccceeccccccceeeecCCCCc---eeeeccccccccccccccccccccccCccc
Confidence             221       111122 123444   55666666 88999988774   22111100                      


Q ss_pred             -----------------CCceEEEEEeCCCCEEEEEEc---------------------------------------CCe
Q 003842          723 -----------------GNKFHSCVFHPTYPSLLVIGC---------------------------------------YQS  746 (792)
Q Consensus       723 -----------------~~~i~si~fspdg~~L~sgs~---------------------------------------dg~  746 (792)
                                       .......+++|+..++++...                                       .|.
T Consensus       375 ~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~  454 (596)
T d1w6sa_         375 GTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQ  454 (596)
T ss_dssp             CCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEE
T ss_pred             cccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccCcccCcccCCCcce
Confidence                             000122356666665554321                                       146


Q ss_pred             EEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          747 LELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       747 I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |.-||+.+++++-...+...+.+-.++..+.+|+.|+.||.++.||
T Consensus       455 l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~D  500 (596)
T d1w6sa_         455 IKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD  500 (596)
T ss_dssp             EEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             EEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEE
Confidence            7888888888774333333333333445677888899999998775

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.66  E-value=0.0021  Score=71.38  Aligned_cols=258  Identities=12%  Similarity=0.102  Sum_probs=152.0

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEeccCCC----------CE-EEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec
Q 003842          526 LLATGGHDKKAVLWHTDTLKSKTNLEEHSS----------LI-TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM  594 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~----------~V-~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~  594 (792)
                      .|++++.++.|+-.|.++|+.+-++.....          .+ ..++.  .+..++.+..|+.|.-.|..+ ++.+..+.
T Consensus        68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~t-G~~~w~~~  144 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKT-GKAIWSQQ  144 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCC-CcEEeccC
Confidence            667777889999999999998887642110          00 01111  244788889999999999888 55554443


Q ss_pred             ccC--CC--eEE-EEEcCCCCeEEEEEeC------CCcEEEEEcCCCeeEEEeeCC------------------------
Q 003842          595 GHS--AS--VMS-LDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFKGG------------------------  639 (792)
Q Consensus       595 ~h~--~~--V~s-l~fspd~~~ll~sgs~------Dg~I~iwdl~~~~~~~~~~~~------------------------  639 (792)
                      ...  ..  ++. -.+. + . .++.+..      .|.|+-+|.++++.+..+...                        
T Consensus       145 ~~~~~~~~~~~~~p~v~-~-~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~  221 (560)
T d1kv9a2         145 TTDPAKPYSITGAPRVV-K-G-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (560)
T ss_dssp             CSCTTSSCBCCSCCEEE-T-T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             ccCcccceeeeeeeeee-c-C-cccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccc
Confidence            211  10  110 0111 1 2 2323322      367999999999998776420                        


Q ss_pred             ----------eeEEEEecCCCEEEEEEc-------------------CCeEEEEECCCCeEEEEecCCCCCeE-------
Q 003842          640 ----------TAQMRFQPHLGRYLAAAA-------------------ENVVSILDAETQACRLSLQGHTKPID-------  683 (792)
Q Consensus       640 ----------~~~v~~sp~~~~lla~s~-------------------dg~I~i~D~~t~~~~~~l~~h~~~V~-------  683 (792)
                                -..+.+.+..+.++.+..                   ...|..+|+++++.+..+......+.       
T Consensus       222 ~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~  301 (560)
T d1kv9a2         222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ  301 (560)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             cccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccce
Confidence                      012566777777666442                   23678889999998877654322211       


Q ss_pred             --EEEEcCCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeecCC----------------------------------
Q 003842          684 --SVCWDPSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNG----------------------------------  723 (792)
Q Consensus       684 --sv~~spdg~---~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~----------------------------------  723 (792)
                        -+.+..+++   .++.+..+ .++++|..+++.   +.......                                  
T Consensus       302 ~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~---i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~  378 (560)
T d1kv9a2         302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL---ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF  378 (560)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred             eeeeeeecCCceeeeeeecCccceEEEEecCCCcc---cccccccccccccccChhhccccccccccccccceeeeeccc
Confidence              122222343   45555555 899999887742   22111100                                  


Q ss_pred             --CceEEEEEeCCCCEEEEEEcC------------------------------------CeEEEEECCCCcEEEEcccCC
Q 003842          724 --NKFHSCVFHPTYPSLLVIGCY------------------------------------QSLELWNMSENKTMTLTAHEG  765 (792)
Q Consensus       724 --~~i~si~fspdg~~L~sgs~d------------------------------------g~I~IwDl~~~~~~~~~~h~~  765 (792)
                        ......+++|+...+++...+                                    |.|.-||+.+++.+-......
T Consensus       379 Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~  458 (560)
T d1kv9a2         379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT  458 (560)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred             cccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC
Confidence              001245677777766654422                                    468889999999884433333


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          766 LIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       766 ~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ...+-.++..+.+|++|+.||.++.||
T Consensus       459 ~~~gg~l~TagglVF~G~~dg~l~A~D  485 (560)
T d1kv9a2         459 HWNGGTLSTAGNLVFQGTAAGQMHAYS  485 (560)
T ss_dssp             SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             CCCCceeEECCCEEEEECCCCcEEEEE
Confidence            333333445577888899999998775

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.63  E-value=0.0022  Score=67.23  Aligned_cols=183  Identities=14%  Similarity=0.138  Sum_probs=118.3

Q ss_pred             CCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC----eeEEEE--ecCCCEEEEEEcC------------------CeEEE
Q 003842          608 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRF--QPHLGRYLAAAAE------------------NVVSI  663 (792)
Q Consensus       608 d~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~--sp~~~~lla~s~d------------------g~I~i  663 (792)
                      ||+++|+.-..+..|.+.|+++.++.++...+    ...++.  .+...++++.+.+                  +.+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            68888888888999999999999988766432    233444  3455677766652                  23678


Q ss_pred             EECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----------------eEEEEEC--------------------
Q 003842          664 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----------------SVRVWTV--------------------  707 (792)
Q Consensus       664 ~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----------------~I~IwDl--------------------  707 (792)
                      +|.++.+....+.. ......+.++++|+++++.+.+                .+.++++                    
T Consensus       178 ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V  256 (459)
T d1fwxa2         178 VDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  256 (459)
T ss_dssp             EETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence            99999988877653 2356678999999998887632                2444443                    


Q ss_pred             ---CCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCc------------EEEEcccCCCeEEEE
Q 003842          708 ---GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENK------------TMTLTAHEGLIAALA  771 (792)
Q Consensus       708 ---~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~~~~------------~~~~~~h~~~V~sl~  771 (792)
                         +.......++.+.. ......|.++|||+++++++. +.++.|+|+++-.            ........-.....+
T Consensus       257 VD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~  335 (459)
T d1fwxa2         257 VDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  335 (459)
T ss_dssp             EECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEE
T ss_pred             ecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccc
Confidence               21101111111111 223457889999999988876 5699999996421            111122233445668


Q ss_pred             EeCCCCEEEEEeCCCcEEEeC
Q 003842          772 VSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       772 fspdg~~LaSgs~DG~I~IWd  792 (792)
                      |+..|....|.--|..|.-|+
T Consensus       336 fd~~g~aytslfids~v~kw~  356 (459)
T d1fwxa2         336 FDGRGNAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             ECTTSEEEEEETTTTEEEEEE
T ss_pred             cCCCceEEEEeeccceEEEEe
Confidence            888775555555688888885

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.61  E-value=0.002  Score=71.73  Aligned_cols=261  Identities=13%  Similarity=0.127  Sum_probs=147.9

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEeccCC----------CCE-EEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec
Q 003842          526 LLATGGHDKKAVLWHTDTLKSKTNLEEHS----------SLI-TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM  594 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~----------~~V-~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~  594 (792)
                      .|++++.++.|.-+|.++|+.+-++....          ..+ ..+.+.  ...++.++.|+.+.-.|..+ ++.+....
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~t-G~~~W~~~  155 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAAT-GKEVWHQN  155 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeecccc-ccceeccc
Confidence            66777788899999999999887764211          011 112222  33677888899888889888 44443332


Q ss_pred             c--cC-CCe--EE-EEEcCCCCeEEEEEeC------CCcEEEEEcCCCeeEEEeeCC-----------------------
Q 003842          595 G--HS-ASV--MS-LDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFKGG-----------------------  639 (792)
Q Consensus       595 ~--h~-~~V--~s-l~fspd~~~ll~sgs~------Dg~I~iwdl~~~~~~~~~~~~-----------------------  639 (792)
                      .  +. ..+  +. ..+.  +.. +++++.      .|.|+.+|.++|+.+..+...                       
T Consensus       156 ~~~~~~~~~~~~~~p~v~--~~~-vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~  232 (573)
T d1kb0a2         156 TFEGQKGSLTITGAPRVF--KGK-VIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS  232 (573)
T ss_dssp             TTTTCCSSCBCCSCCEEE--TTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             CccCCcceEEeecceEEE--ecc-EEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCC
Confidence            1  11 111  11 0111  122 334332      468999999999988765311                       


Q ss_pred             -----------e-eEEEEecCCCEEEEEEc-------------------CCeEEEEECCCCeEEEEecCCCC--------
Q 003842          640 -----------T-AQMRFQPHLGRYLAAAA-------------------ENVVSILDAETQACRLSLQGHTK--------  680 (792)
Q Consensus       640 -----------~-~~v~~sp~~~~lla~s~-------------------dg~I~i~D~~t~~~~~~l~~h~~--------  680 (792)
                                 + ....+.+..+.++....                   ...|...|.++++.+..+.....        
T Consensus       233 ~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~  312 (573)
T d1kb0a2         233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST  312 (573)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             CceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccccccccc
Confidence                       0 12456666666665442                   12577889999988877654221        


Q ss_pred             -CeEEEEEcCCC---CEEEEEeCC-eEEEEECCCCCCcceEEEee--------c------------------------CC
Q 003842          681 -PIDSVCWDPSG---ELLASVSED-SVRVWTVGSGSEGECVHELS--------C------------------------NG  723 (792)
Q Consensus       681 -~V~sv~~spdg---~~Las~s~d-~I~IwDl~s~~~~~~i~~~~--------~------------------------~~  723 (792)
                       +........++   .+++.++.+ .+++||..+++.........        .                        ..
T Consensus       313 ~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg  392 (573)
T d1kb0a2         313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA  392 (573)
T ss_dssp             SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred             ceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCC
Confidence             11222222333   245555555 89999988874321111000        0                        00


Q ss_pred             CceEEEEEeCCCCEEEEEEcC-------------------------------------------CeEEEEECCCCcEEEE
Q 003842          724 NKFHSCVFHPTYPSLLVIGCY-------------------------------------------QSLELWNMSENKTMTL  760 (792)
Q Consensus       724 ~~i~si~fspdg~~L~sgs~d-------------------------------------------g~I~IwDl~~~~~~~~  760 (792)
                      ......+++|+...+++...+                                           |.|.-||+.+++.+-.
T Consensus       393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~  472 (573)
T d1kb0a2         393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS  472 (573)
T ss_dssp             SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred             ccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEee
Confidence            011234677777766654332                                           3577788888887733


Q ss_pred             cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003842          761 TAHEGLIAALAVSTETGYVASASHDKFVKLWK  792 (792)
Q Consensus       761 ~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd  792 (792)
                      ..+..+...-..+..+.+|++|+.||.++.||
T Consensus       473 ~~~~~p~~gg~lstagglVF~G~~dg~l~A~D  504 (573)
T d1kb0a2         473 VEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (573)
T ss_dssp             EEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             ecCCCCCCCceEEEcCCEEEEECCCCeEEEEE
Confidence            33333322223344677888899999999875

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.54  E-value=0.0039  Score=64.78  Aligned_cols=227  Identities=9%  Similarity=0.036  Sum_probs=118.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCceeEEecc-CCCCEEEEEECCCCCeEEEEeCC------CcEEEEeCC
Q 003842          513 SKVICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFD------KTVRVWDAD  584 (792)
Q Consensus       513 ~~V~~lafspdg~~Lasgs~D-g~I~vWdl~t~~~~~~l~~-h~~~V~~i~fspdg~~Lasgs~D------g~V~IWdl~  584 (792)
                      .....+++.+||++++.|+.+ ..+.+||..+..-...-.. ....-..++..+|+++++.|+.+      ..+.+||..
T Consensus        76 ~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~  155 (387)
T d1k3ia3          76 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  155 (387)
T ss_dssp             CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             cceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCC
Confidence            334566788999999998765 5899999887654332111 11222456777899999988753      368999998


Q ss_pred             CCCceeEEecc----------cC-----CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC-----------
Q 003842          585 NPGYSLRTFMG----------HS-----ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----------  638 (792)
Q Consensus       585 s~~~~i~~~~~----------h~-----~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----------  638 (792)
                      +...  ..+..          +.     .....+...+++ .+++.++.++.+.++|..+.........           
T Consensus       156 ~~~W--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (387)
T d1k3ia3         156 SKTW--TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKG-SVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAM  232 (387)
T ss_dssp             TTEE--EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGG-CEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCB
T ss_pred             CCce--eecCCCcccccccccccceeeccceeEEEEeCCC-CEEEecCcCCcEEecCcccCcEeeccccccCcccCcccc
Confidence            6322  11110          00     000111122333 3455666667777777777654432110           


Q ss_pred             CeeEEEEecCCC-EEEEEEcC--------CeEEEEECCC---CeEEEEecC---CCCCeEEEEEcCCCCEEEEEeCC---
Q 003842          639 GTAQMRFQPHLG-RYLAAAAE--------NVVSILDAET---QACRLSLQG---HTKPIDSVCWDPSGELLASVSED---  700 (792)
Q Consensus       639 ~~~~v~~sp~~~-~lla~s~d--------g~I~i~D~~t---~~~~~~l~~---h~~~V~sv~~spdg~~Las~s~d---  700 (792)
                      ....+.+....+ .+++++..        ....+++...   .........   +...-.+.+..+||++++.|+.+   
T Consensus       233 ~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~  312 (387)
T d1k3ia3         233 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI  312 (387)
T ss_dssp             TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred             cccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCc
Confidence            112233333333 34444431        1333343332   111121111   12223356666899988887732   


Q ss_pred             ---------eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003842          701 ---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC  743 (792)
Q Consensus       701 ---------~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~  743 (792)
                               .+.+||..+. ....+..+......-....+.+||+.++.|+.
T Consensus       313 ~~~~~~~~~~ve~Ydp~~~-~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         313 PFEDSTPVFTPEIYVPEQD-TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             TTCCCSBCCCCEEEEGGGT-EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCCCCcEeceEEEEECCCC-eEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence                     4778998764 11222222111111123456789999998884

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=0.06  Score=53.36  Aligned_cols=225  Identities=10%  Similarity=0.159  Sum_probs=144.4

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEeccc
Q 003842          517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH  596 (792)
Q Consensus       517 ~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h  596 (792)
                      +.-.+|..+.||.-+ ..++.|||+++...++.+.-.. .|.--.|..+. .|+..+. ..|+-|+++.+..+.+.+..|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~-~L~lVT~-taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSS-EEEEECS-SEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCC-EEEEEcC-CceEEEcccCCCCchhhhhhc
Confidence            344567777777765 5689999999988888876544 45555776554 5554443 359999997766777777766


Q ss_pred             C----CCeEEEEEcCCCCeEEEEEe------CCCcEEEEEcCCCeeEEEeeCCeeEEE-EecCC----CEEEEEEc----
Q 003842          597 S----ASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHL----GRYLAAAA----  657 (792)
Q Consensus       597 ~----~~V~sl~fspd~~~ll~sgs------~Dg~I~iwdl~~~~~~~~~~~~~~~v~-~sp~~----~~lla~s~----  657 (792)
                      .    ..|.....+++.+.++++|=      -.|.+.+|..+.+ .-..++++..+.. +..++    ..+++-+.    
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence            4    35777777888888776652      1467788988754 3344555554433 21121    22333332    


Q ss_pred             CCeEEEEECCCC--------eEEEEec-C---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCC
Q 003842          658 ENVVSILDAETQ--------ACRLSLQ-G---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN  724 (792)
Q Consensus       658 dg~I~i~D~~t~--------~~~~~l~-~---h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~  724 (792)
                      .+.++|.++...        +....+. .   -.+--.++..++.-.+++..+.. .|++||++++   .++..-.....
T Consensus       222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg---t~i~~nRIs~~  298 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGE  298 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred             CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc---cEEEEeecCCC
Confidence            368888887542        1111121 1   12334567777777777777776 9999999988   77777776667


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEE
Q 003842          725 KFHSCVFHPTYPSLLVIGCYQSLEL  749 (792)
Q Consensus       725 ~i~si~fspdg~~L~sgs~dg~I~I  749 (792)
                      .|...+-+.+..-|++...+|.|..
T Consensus       299 ~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         299 TIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             ceEEeccCCCCceEEEECCCCeEEE
Confidence            7666666666555666667775543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.43  E-value=0.015  Score=64.17  Aligned_cols=254  Identities=12%  Similarity=0.115  Sum_probs=139.3

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccCCC-CEEEEEECC--CCCeEEEEe------CCCcEEEEeCCCCCceeEEec
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSP--SMPRLATSS------FDKTVRVWDADNPGYSLRTFM  594 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~-~V~~i~fsp--dg~~Lasgs------~Dg~V~IWdl~s~~~~i~~~~  594 (792)
                      +..++.++.|+.|...|..+++.+.....+.. ....+.-.|  .+..++++.      ..|.|+-+|+++ ++.+-.+.
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~T-G~~~W~~~  195 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADT-GKLAWRFY  195 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT-CCEEEEEE
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCC-ceEEeeee
Confidence            34678888899999999999998877653221 111111111  122444443      236799999998 44444432


Q ss_pred             c-c-----------------------------CCCe-EEEEEcCCCCeEEEEEeC------------------CCcEEEE
Q 003842          595 G-H-----------------------------SASV-MSLDFHPNKDDLICSCDG------------------DGEIRYW  625 (792)
Q Consensus       595 ~-h-----------------------------~~~V-~sl~fspd~~~ll~sgs~------------------Dg~I~iw  625 (792)
                      . .                             ...+ ..+.+.+....+++..+.                  ...|...
T Consensus       196 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAl  275 (560)
T d1kv9a2         196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (560)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             eccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEe
Confidence            1 0                             1111 124555655443332111                  2457778


Q ss_pred             EcCCCeeEEEeeCC------------eeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEecCCCC-C--------
Q 003842          626 SINNGSCTRVFKGG------------TAQMRFQPHLG---RYLAAAAENVVSILDAETQACRLSLQGHTK-P--------  681 (792)
Q Consensus       626 dl~~~~~~~~~~~~------------~~~v~~sp~~~---~lla~s~dg~I~i~D~~t~~~~~~l~~h~~-~--------  681 (792)
                      |+++++.+..+...            ...+.+..+++   .++.+..+|.++++|.++++++.....-.. .        
T Consensus       276 d~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~  355 (560)
T d1kv9a2         276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (560)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhh
Confidence            99999887665321            11122333332   345566789999999999998765432110 0        


Q ss_pred             ---------------------------eEEEEEcCCCCEEEEEeCC----------------------------------
Q 003842          682 ---------------------------IDSVCWDPSGELLASVSED----------------------------------  700 (792)
Q Consensus       682 ---------------------------V~sv~~spdg~~Las~s~d----------------------------------  700 (792)
                                                 -...+++|+..+++....+                                  
T Consensus       356 ~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  435 (560)
T d1kv9a2         356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (560)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             ccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcc
Confidence                                       0134567776666654422                                  


Q ss_pred             ---eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCe--EEEEEeCC
Q 003842          701 ---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLI--AALAVSTE  775 (792)
Q Consensus       701 ---~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V--~sl~fspd  775 (792)
                         .|.-||+.++   +.+..+.... ....-.+.-.+..+++++.||.++.||.++++.+-...-...+  .-+.|..|
T Consensus       436 ~~G~l~A~D~~tG---k~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~d  511 (560)
T d1kv9a2         436 VSGALLAWDPVKQ---KAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELA  511 (560)
T ss_dssp             CEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             cccceEEEeCCCC---eEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEEC
Confidence               3455666555   3333322211 1112223445678889999999999999999998322211111  12455567


Q ss_pred             CC-EEEEE
Q 003842          776 TG-YVASA  782 (792)
Q Consensus       776 g~-~LaSg  782 (792)
                      |+ ||++.
T Consensus       512 Gkqyv~v~  519 (560)
T d1kv9a2         512 GRQYVAIM  519 (560)
T ss_dssp             TEEEEEEE
T ss_pred             CEEEEEEE
Confidence            76 55543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.35  E-value=0.023  Score=63.10  Aligned_cols=150  Identities=11%  Similarity=0.074  Sum_probs=87.9

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCE-EEEEECC--CCCeEEEEeC------CCcEEEEeCCCCCceeEEec
Q 003842          524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLI-TDVRFSP--SMPRLATSSF------DKTVRVWDADNPGYSLRTFM  594 (792)
Q Consensus       524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V-~~i~fsp--dg~~Lasgs~------Dg~V~IWdl~s~~~~i~~~~  594 (792)
                      +.+|+.++.|+.|+-.|.++++.+..+....... ..+.-.|  .+..++++..      .|.|+-||+.+ ++.+-.+.
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~T-G~~~W~~~  199 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKT-GEQVWRAY  199 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTT-CCEEEEEE
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCC-CcEEEEee
Confidence            4478888999999999999999888774211100 0011111  1335555543      48899999998 55444432


Q ss_pred             cc-------------------------------------CCC-eEEEEEcCCCCeEEEEEeC----------------CC
Q 003842          595 GH-------------------------------------SAS-VMSLDFHPNKDDLICSCDG----------------DG  620 (792)
Q Consensus       595 ~h-------------------------------------~~~-V~sl~fspd~~~ll~sgs~----------------Dg  620 (792)
                      ..                                     ... -..+++.+..+.++ .+..                ..
T Consensus       200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy-~~tg~~~p~~~~~r~g~n~ys~  278 (596)
T d1w6sa_         200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIY-FGTGNPAPWNETMRPGDNKWTM  278 (596)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTSS
T ss_pred             ccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeee-cccccccccccccccccccccc
Confidence            11                                     011 12345555544333 3322                24


Q ss_pred             cEEEEEcCCCeeEEEeeCC----------ee--EEEE-ecCCC---EEEEEEcCCeEEEEECCCCeEEEEe
Q 003842          621 EIRYWSINNGSCTRVFKGG----------TA--QMRF-QPHLG---RYLAAAAENVVSILDAETQACRLSL  675 (792)
Q Consensus       621 ~I~iwdl~~~~~~~~~~~~----------~~--~v~~-sp~~~---~lla~s~dg~I~i~D~~t~~~~~~l  675 (792)
                      .|...|+++++.+..+...          ..  .+.. ..++.   .++....+|.++++|.++++++...
T Consensus       279 sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~  349 (596)
T d1w6sa_         279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (596)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence            5888999999988766421          11  1111 22332   3555677899999999999887543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.31  E-value=0.03  Score=62.01  Aligned_cols=185  Identities=9%  Similarity=0.016  Sum_probs=103.6

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEeccCC--------CCE-EEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec-
Q 003842          525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHS--------SLI-TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-  594 (792)
Q Consensus       525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~--------~~V-~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~-  594 (792)
                      ..|++++.++.|+-.|.++|+.+-++....        ..+ ..+++.  +..|+.++.|+.+.-.|..++........ 
T Consensus        69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~~  146 (582)
T d1flga_          69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceeeeeccc
Confidence            367777888999999999999887764210        001 112222  34788889999999999988443322221 


Q ss_pred             ccCC-----CeEEEEEc-CCCCeEEEEE------eCCCcEEEEEcCCCeeEEEeeCC-----------------------
Q 003842          595 GHSA-----SVMSLDFH-PNKDDLICSC------DGDGEIRYWSINNGSCTRVFKGG-----------------------  639 (792)
Q Consensus       595 ~h~~-----~V~sl~fs-pd~~~ll~sg------s~Dg~I~iwdl~~~~~~~~~~~~-----------------------  639 (792)
                      .+..     ....+.-. .....+++.+      +..+.|.-+|.++++.+..+...                       
T Consensus       147 ~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~  226 (582)
T d1flga_         147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW  226 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred             CCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccccccC
Confidence            1110     00011111 1122233332      23567889999999887654211                       


Q ss_pred             ---------------------eeEEEEecCCCEEEEEEc------------------------CCeEEEEECCCCeEEEE
Q 003842          640 ---------------------TAQMRFQPHLGRYLAAAA------------------------ENVVSILDAETQACRLS  674 (792)
Q Consensus       640 ---------------------~~~v~~sp~~~~lla~s~------------------------dg~I~i~D~~t~~~~~~  674 (792)
                                           -..+.+.+..+.++++..                        ...|...|.++++.+..
T Consensus       227 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~  306 (582)
T d1flga_         227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF  306 (582)
T ss_dssp             CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred             CCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhhc
Confidence                                 012566777777776652                        23577889999998877


Q ss_pred             ecC--CCCCe-------EEEEEc-CCCC---EEEEEeCC-eEEEEECCCCC
Q 003842          675 LQG--HTKPI-------DSVCWD-PSGE---LLASVSED-SVRVWTVGSGS  711 (792)
Q Consensus       675 l~~--h~~~V-------~sv~~s-pdg~---~Las~s~d-~I~IwDl~s~~  711 (792)
                      +..  |....       .-+.+. .+++   .++..+.+ .++++|-++++
T Consensus       307 ~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~  357 (582)
T d1flga_         307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK  357 (582)
T ss_dssp             EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ccccccccccccccccccccccccccccccceeEeecccccEEeecccCCc
Confidence            654  32221       111121 2333   34444455 78888877763

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.27  E-value=0.031  Score=61.68  Aligned_cols=251  Identities=9%  Similarity=0.072  Sum_probs=132.8

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEecc--CCCCEEEEEECC--CCCeEEEEeC------CCcEEEEeCCCCCceeEEecc
Q 003842          526 LLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSP--SMPRLATSSF------DKTVRVWDADNPGYSLRTFMG  595 (792)
Q Consensus       526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~--h~~~V~~i~fsp--dg~~Lasgs~------Dg~V~IWdl~s~~~~i~~~~~  595 (792)
                      .++.++.|+.++..|.++++.+.....  +...-..+.-.|  .+..+++++.      .|.|+.+|.++ ++.+-.+..
T Consensus       130 ~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~T-G~~~W~~~t  208 (573)
T d1kb0a2         130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAET-GERKWRWFS  208 (573)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT-CCEEEEEES
T ss_pred             cEEEEecccceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCC-ccceeeeee
Confidence            567777888888889999988765542  111100111111  1234555432      46799999998 544443321


Q ss_pred             c-------------------------------CCCe-EEEEEcCCCCeEEEEEeC------------------CCcEEEE
Q 003842          596 H-------------------------------SASV-MSLDFHPNKDDLICSCDG------------------DGEIRYW  625 (792)
Q Consensus       596 h-------------------------------~~~V-~sl~fspd~~~ll~sgs~------------------Dg~I~iw  625 (792)
                      .                               ...+ ....+.+....+++..+.                  ...|...
T Consensus       209 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAl  288 (573)
T d1kb0a2         209 VPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVAL  288 (573)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEe
Confidence            1                               0111 124455554433321111                  1246777


Q ss_pred             EcCCCeeEEEeeCC------------eeEEEEecCC---CEEEEEEcCCeEEEEECCCCeEEEEecCCCCC---------
Q 003842          626 SINNGSCTRVFKGG------------TAQMRFQPHL---GRYLAAAAENVVSILDAETQACRLSLQGHTKP---------  681 (792)
Q Consensus       626 dl~~~~~~~~~~~~------------~~~v~~sp~~---~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~---------  681 (792)
                      |+++++....+...            ........++   ..++.+..+|.++++|.++++.+.........         
T Consensus       289 d~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~  368 (573)
T d1kb0a2         289 DPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHG  368 (573)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTS
T ss_pred             cccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccccccccccccccccccccccc
Confidence            88888877654321            1112222333   23556667899999999999987654321100         


Q ss_pred             --------------------------eEEEEEcCCCCEEEEEeCC-e---------------------------------
Q 003842          682 --------------------------IDSVCWDPSGELLASVSED-S---------------------------------  701 (792)
Q Consensus       682 --------------------------V~sv~~spdg~~Las~s~d-~---------------------------------  701 (792)
                                                -..++++|+..+++....+ .                                 
T Consensus       369 ~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  448 (573)
T d1kb0a2         369 KPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNA  448 (573)
T ss_dssp             CEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECS
T ss_pred             ceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCcccccccccccccccc
Confidence                                      1124677777666654433 2                                 


Q ss_pred             ----------EEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeE--E
Q 003842          702 ----------VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIA--A  769 (792)
Q Consensus       702 ----------I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~--s  769 (792)
                                |.-||+.++   +.+....... +...-.++-.+..|++++.|+.++.||.++++.+-...-...+.  -
T Consensus       449 ~p~~~~~~G~l~AiD~~tG---k~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P  524 (573)
T d1kb0a2         449 EPPKSKPFGRLLAWDPVAQ---KAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP  524 (573)
T ss_dssp             SCCCSCCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             CCCCCCCcccEEEeCCCCC---ceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC
Confidence                      333444333   2222222111 11111233367788899999999999999999983222111111  1


Q ss_pred             EEEeCCCC-EEEE
Q 003842          770 LAVSTETG-YVAS  781 (792)
Q Consensus       770 l~fspdg~-~LaS  781 (792)
                      +.|..||+ ||+.
T Consensus       525 ~ty~~~GkQYv~v  537 (573)
T d1kb0a2         525 STYMVDGRQYVSV  537 (573)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             EEEEECCEEEEEE
Confidence            44555776 4443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.09  E-value=0.1  Score=55.02  Aligned_cols=221  Identities=8%  Similarity=0.030  Sum_probs=118.4

Q ss_pred             CCCCEEEEEECCCCCeEEEE-eCCC----cEEEEeCCCCCceeE-EecccCCCeEEEEEcCCCCeEEEEEeC--------
Q 003842          553 HSSLITDVRFSPSMPRLATS-SFDK----TVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDG--------  618 (792)
Q Consensus       553 h~~~V~~i~fspdg~~Lasg-s~Dg----~V~IWdl~s~~~~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~--------  618 (792)
                      +.-.+..++++|++++|+.+ +.+|    .|+++|+.+ +..+. .+..  .....++|.+++..++++.-.        
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~t-g~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~  199 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG-AKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT-TEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCc-ceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccc
Confidence            33345567889999988754 3333    599999998 44332 3322  122468899999888876532        


Q ss_pred             -------CCcEEEEEcCCCee--EEEeeC---C--eeEEEEecCCCEEEEEEc---CC--eEEEEECCCCe--------E
Q 003842          619 -------DGEIRYWSINNGSC--TRVFKG---G--TAQMRFQPHLGRYLAAAA---EN--VVSILDAETQA--------C  671 (792)
Q Consensus       619 -------Dg~I~iwdl~~~~~--~~~~~~---~--~~~v~~sp~~~~lla~s~---dg--~I~i~D~~t~~--------~  671 (792)
                             ...|++|.+.+...  +..+..   .  ...+..+.++.+++....   +.  .+.+.|+....        .
T Consensus       200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  279 (430)
T d1qfma1         200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (430)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccce
Confidence                   12578888876532  223322   1  234567788888765443   22  35555544321        1


Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCC-
Q 003842          672 RLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQ-  745 (792)
Q Consensus       672 ~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg-  745 (792)
                      ...+......+.-+.. .++.+++....+    .|...++...........+..+...+..-.+...+.+|++.. .++ 
T Consensus       280 ~~~~~~~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~  358 (430)
T d1qfma1         280 VKLIDNFEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK  358 (430)
T ss_dssp             EEEECSSSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred             eEeecccccceEEEec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCE
Confidence            2222222233333322 223333333322    566677765433222223333444455445555556666554 444 


Q ss_pred             -eEEEEECCCCcEEEEc-ccCCCeEEEEEeCCCC
Q 003842          746 -SLELWNMSENKTMTLT-AHEGLIAALAVSTETG  777 (792)
Q Consensus       746 -~I~IwDl~~~~~~~~~-~h~~~V~sl~fspdg~  777 (792)
                       .|+++++.++....+. ...+.|..+...++..
T Consensus       359 ~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~  392 (430)
T d1qfma1         359 NTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT  392 (430)
T ss_dssp             EEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred             eEEEEEECCCCcEEEecCCCCceEeeccCCCCCC
Confidence             7899999988776432 3334455554444444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.09  E-value=0.15  Score=51.96  Aligned_cols=182  Identities=8%  Similarity=0.043  Sum_probs=100.5

Q ss_pred             EEEEEECCCCCeEEEEeC------------CCcEEEEeCCCCCceeEEecccC-------CCeEEEEE--cCCCCeEEEE
Q 003842          557 ITDVRFSPSMPRLATSSF------------DKTVRVWDADNPGYSLRTFMGHS-------ASVMSLDF--HPNKDDLICS  615 (792)
Q Consensus       557 V~~i~fspdg~~Lasgs~------------Dg~V~IWdl~s~~~~i~~~~~h~-------~~V~sl~f--spd~~~ll~s  615 (792)
                      ..+|+..|+|..|++++.            .|.|.++|+.+.......+....       -....|.+  ..++...|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            345666676665555432            48899999987544443332111       12344444  3455555555


Q ss_pred             Ee---CCCcEEEEEcCCCee--E--EEeeC----CeeEEEEecCCCEEEEEEc-----------------CCeEEEEECC
Q 003842          616 CD---GDGEIRYWSINNGSC--T--RVFKG----GTAQMRFQPHLGRYLAAAA-----------------ENVVSILDAE  667 (792)
Q Consensus       616 gs---~Dg~I~iwdl~~~~~--~--~~~~~----~~~~v~~sp~~~~lla~s~-----------------dg~I~i~D~~  667 (792)
                      ..   ...+|.+|++.....  .  ..+..    ..+.+.+..++..+++-..                 .+.|..||..
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            43   456788888764332  1  12222    3466777777665555211                 1234444443


Q ss_pred             CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003842          668 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG  742 (792)
Q Consensus       668 t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs  742 (792)
                      ..+.+  .. .-..-+.|+++||+++|+++...  .|++|++...........+. -....-.+.+.+.+..+++++
T Consensus       197 ~~~~~--~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         197 DVRVV--AE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             CEEEE--EE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred             ceEEE--cC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEE
Confidence            33222  22 23457889999999988777654  89999987543333333332 345567788876444444443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.03  E-value=0.36  Score=52.85  Aligned_cols=52  Identities=4%  Similarity=-0.021  Sum_probs=34.7

Q ss_pred             EeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCC--eEEEEEeCCCC-EEEEE
Q 003842          731 FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGL--IAALAVSTETG-YVASA  782 (792)
Q Consensus       731 fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~--V~sl~fspdg~-~LaSg  782 (792)
                      ++..+..+++++.||.++.||.++++++-...-...  -.-+.|..+|+ ||+..
T Consensus       493 lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~  547 (582)
T d1flga_         493 LATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             eEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            345677888999999999999999999932222111  12256667886 55443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.78  E-value=0.13  Score=52.69  Aligned_cols=186  Identities=17%  Similarity=0.228  Sum_probs=116.8

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEEC------CCCCeEEEEeC--C--CcEEEEeCCCCCceeE
Q 003842          522 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS------PSMPRLATSSF--D--KTVRVWDADNPGYSLR  591 (792)
Q Consensus       522 pdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fs------pdg~~Lasgs~--D--g~V~IWdl~s~~~~i~  591 (792)
                      |+..+++....++-|++||++ |+.+..+.  .+.++.|..-      .....|++++.  +  .+|.+|.+......+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            344567766777779999985 77777765  3455655543      22223445542  2  3588898875444454


Q ss_pred             Eeccc-------CCCeEEEEE--cCC-CCeEEEEEeCCCcEEEEEcC---CC----eeEEEee--CCeeEEEEecCCCEE
Q 003842          592 TFMGH-------SASVMSLDF--HPN-KDDLICSCDGDGEIRYWSIN---NG----SCTRVFK--GGTAQMRFQPHLGRY  652 (792)
Q Consensus       592 ~~~~h-------~~~V~sl~f--spd-~~~ll~sgs~Dg~I~iwdl~---~~----~~~~~~~--~~~~~v~~sp~~~~l  652 (792)
                      .+...       ...++.+|+  ++. +..++++..++|.+..|.+.   .+    +.++.|.  .....|.+....+.|
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~L  194 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSL  194 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcE
Confidence            44322       224677777  554 44566677889999988773   22    2344454  346678889999999


Q ss_pred             EEEEcCCeEEEEECCC-----CeEEEEecC--CCCCeEEEEEcC--CCC-EEEEEeCC--eEEEEECCCC
Q 003842          653 LAAAAENVVSILDAET-----QACRLSLQG--HTKPIDSVCWDP--SGE-LLASVSED--SVRVWTVGSG  710 (792)
Q Consensus       653 la~s~dg~I~i~D~~t-----~~~~~~l~~--h~~~V~sv~~sp--dg~-~Las~s~d--~I~IwDl~s~  710 (792)
                      +++-++..|..++.+-     ...+....+  ....+..|++-.  ++. ||++.+.+  +..|||....
T Consensus       195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            9999988888887642     233333322  355677777543  333 66666554  8999998754

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.61  E-value=0.28  Score=45.63  Aligned_cols=219  Identities=11%  Similarity=0.026  Sum_probs=117.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEE-CCCCCeEEEE------eCCCcEEEEeCCCCCceeEEecc
Q 003842          523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-SPSMPRLATS------SFDKTVRVWDADNPGYSLRTFMG  595 (792)
Q Consensus       523 dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~f-spdg~~Lasg------s~Dg~V~IWdl~s~~~~i~~~~~  595 (792)
                      +.++|+++...|.|.++-+..++.++--+.   +|..... .+.-.++..+      -.-..|++-++..+++..+.-..
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtke---PI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp  101 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNRE---PINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV  101 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCSS---CCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEecc---cccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence            344888888899999998887776554332   2211111 1111122221      11223555555544443332222


Q ss_pred             cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEc--CC--eEEEEECCCCeE
Q 003842          596 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA--EN--VVSILDAETQAC  671 (792)
Q Consensus       596 h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~--dg--~I~i~D~~t~~~  671 (792)
                      ..-.|.++++  +++.++++|+....+.+|-++.|+..+...-+...+.-.-.+++++-.+-  .+  .+.+-|+.++. 
T Consensus       102 k~vRI~S~~y--ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~-  178 (313)
T d2hu7a1         102 KPMRILSGVD--TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-  178 (313)
T ss_dssp             CSBEEEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEE-
T ss_pred             ceEEEEEeee--cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCC-
Confidence            2244556655  46778889999999999999998876654433333322223333322111  11  22333443332 


Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeec--------CCCceEEEEEeCCCCEEE
Q 003842          672 RLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSC--------NGNKFHSCVFHPTYPSLL  739 (792)
Q Consensus       672 ~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~--------~~~~i~si~fspdg~~L~  739 (792)
                      +..+....+.++...+.+..+. +++.+.    ...-+|++++.    ...+..        ....|.-+-+.|+++.++
T Consensus       179 lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~----yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~i  253 (313)
T d2hu7a1         179 LRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGS----VEDLELPSKDFSSYRPTAITWLGYLPDGRLAV  253 (313)
T ss_dssp             EEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC----EEECCCSSCHHHHHCCSEEEEEEECTTSCEEE
T ss_pred             EEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCc----eeeeecCcccceeecceEEEeeeeCCCCcEEE
Confidence            2223334455666666666555 444332    22245776542    222211        123466677999999989


Q ss_pred             EEEcCCeEEEEEC
Q 003842          740 VIGCYQSLELWNM  752 (792)
Q Consensus       740 sgs~dg~I~IwDl  752 (792)
                      ++-.||.-.+|+-
T Consensus       254 iakrdG~s~lF~n  266 (313)
T d2hu7a1         254 VARREGRSAVFID  266 (313)
T ss_dssp             EEEETTEEEEEET
T ss_pred             EEecCCchheeec
Confidence            9999998888863

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.29  E-value=0.71  Score=46.68  Aligned_cols=185  Identities=13%  Similarity=0.067  Sum_probs=105.6

Q ss_pred             eEEEEEcCCCCEEEEEeC------------CCeEEEEECCCCceeE-Ee--ccC-----CCCEEEEEE--CCCCC-eEEE
Q 003842          515 VICCHFSSDGKLLATGGH------------DKKAVLWHTDTLKSKT-NL--EEH-----SSLITDVRF--SPSMP-RLAT  571 (792)
Q Consensus       515 V~~lafspdg~~Lasgs~------------Dg~I~vWdl~t~~~~~-~l--~~h-----~~~V~~i~f--spdg~-~Las  571 (792)
                      .-+|+..+||..+++++.            .|.|.++|+++.+... .+  .+.     .-....|.+  ..++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            446788888877766542            4899999987654322 22  111     112233333  45665 3444


Q ss_pred             Ee---CCCcEEEEeCCCCCceeEEec----ccCCCeEEEEEcCCCCeEEEEEeC---------------CCcEEEEEcCC
Q 003842          572 SS---FDKTVRVWDADNPGYSLRTFM----GHSASVMSLDFHPNKDDLICSCDG---------------DGEIRYWSINN  629 (792)
Q Consensus       572 gs---~Dg~V~IWdl~s~~~~i~~~~----~h~~~V~sl~fspd~~~ll~sgs~---------------Dg~I~iwdl~~  629 (792)
                      ..   ...+|.||++......+....    ......++|++..++. +++|-..               -+...+|..+.
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            42   456799999876554433222    1234578899888875 4445211               12333444443


Q ss_pred             CeeEEEe--eCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEE--EEecCCCCCeEEEEEcC-CCCEEEEEeCC
Q 003842          630 GSCTRVF--KGGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACR--LSLQGHTKPIDSVCWDP-SGELLASVSED  700 (792)
Q Consensus       630 ~~~~~~~--~~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~--~~l~~h~~~V~sv~~sp-dg~~Las~s~d  700 (792)
                      +++....  -...+-+++++++++++++.. .+.|++|++.....+  .....-......+.+++ +|.+++++...
T Consensus       196 ~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~p~  272 (340)
T d1v04a_         196 NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPN  272 (340)
T ss_dssp             SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEECCc
Confidence            3333222  245677999999998877766 679999988754221  11112344567788876 56666665443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.73  E-value=1.5  Score=45.84  Aligned_cols=56  Identities=9%  Similarity=0.153  Sum_probs=39.0

Q ss_pred             CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-eeEEec------ccCCCeEEEEEcCC
Q 003842          553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFM------GHSASVMSLDFHPN  608 (792)
Q Consensus       553 h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~-~i~~~~------~h~~~V~sl~fspd  608 (792)
                      .-...++|+|.|++++|++--.+|.|++++..+... .+..+.      .-......|+|+|+
T Consensus        25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            345678999999998888776689999998776322 122221      12356789999985

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.21  Score=48.52  Aligned_cols=212  Identities=9%  Similarity=-0.039  Sum_probs=96.6

Q ss_pred             eEEEEECCCCceeE--EeccCCCCEEEEEECCCCCeEEEEeC---------CCcEEEEeCCCCCceeEEecc---cCCCe
Q 003842          535 KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSF---------DKTVRVWDADNPGYSLRTFMG---HSASV  600 (792)
Q Consensus       535 ~I~vWdl~t~~~~~--~l~~h~~~V~~i~fspdg~~Lasgs~---------Dg~V~IWdl~s~~~~i~~~~~---h~~~V  600 (792)
                      .|.+||.++.+-..  .+......-..+.+  ++.+++.|+.         -..+.+||..+..  ...+..   ....-
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--w~~~~~~p~~r~~~   95 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ--WSPCAPMSVPRNRI   95 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE--EEECCCCSSCCBTC
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhccccccc--ccccccccceecce
Confidence            57899998764322  23222222222333  4566666653         1357788877522  222211   11111


Q ss_pred             EEEEEcCCCCeEEEEEeCCCc-----EEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEc-----CCeEEEEECC
Q 003842          601 MSLDFHPNKDDLICSCDGDGE-----IRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAA-----ENVVSILDAE  667 (792)
Q Consensus       601 ~sl~fspd~~~ll~sgs~Dg~-----I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~-----dg~I~i~D~~  667 (792)
                      .++.+  + ..+++.++.++.     +..||..+..........   ............++.++.     ...+..||..
T Consensus        96 ~~~~~--~-~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~  172 (288)
T d1zgka1          96 GVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE  172 (288)
T ss_dssp             EEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETT
T ss_pred             ecccc--c-eeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEEEeecc
Confidence            22222  2 345555544333     445666665543321111   111111223334444443     2467888887


Q ss_pred             CCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeec-CCCce-EEEEEeCCCCEE
Q 003842          668 TQACRLSLQG-HTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSC-NGNKF-HSCVFHPTYPSL  738 (792)
Q Consensus       668 t~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d------~I~IwDl~s~~~~~~i~~~~~-~~~~i-~si~fspdg~~L  738 (792)
                      +.+....-.. ......+++.. ++++++.++.+      .+.+||..+.   . ...+.. ..... .+++ .-+++.+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~---~-~~~~~~~p~~r~~~~~~-~~~~~l~  246 (288)
T d1zgka1         173 RNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE---T-WTFVAPMKHRRSALGIT-VHQGRIY  246 (288)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT---E-EEECCCCSSCCBSCEEE-EETTEEE
T ss_pred             ccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecce---e-eecccCccCcccceEEE-EECCEEE
Confidence            7654432211 11112233332 34555554422      4667777653   1 111111 11112 2223 2367777


Q ss_pred             EEEEcCC-----eEEEEECCCCcEEE
Q 003842          739 LVIGCYQ-----SLELWNMSENKTMT  759 (792)
Q Consensus       739 ~sgs~dg-----~I~IwDl~~~~~~~  759 (792)
                      ++|+.++     .|.+||+.+++-..
T Consensus       247 v~GG~~~~~~~~~v~~yd~~~~~W~~  272 (288)
T d1zgka1         247 VLGGYDGHTFLDSVECYDPDTDTWSE  272 (288)
T ss_dssp             EECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred             EEecCCCCeecceEEEEECCCCEEEE
Confidence            7776554     58899999876543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.49  E-value=0.94  Score=45.91  Aligned_cols=181  Identities=11%  Similarity=0.198  Sum_probs=106.1

Q ss_pred             CeEEEEEeCCCcEEEEEcCCCeeEEEee-CCeeEEEEe----cCCC--EEEEEEc-C---CeEEEEECCC-CeEEEEecC
Q 003842          610 DDLICSCDGDGEIRYWSINNGSCTRVFK-GGTAQMRFQ----PHLG--RYLAAAA-E---NVVSILDAET-QACRLSLQG  677 (792)
Q Consensus       610 ~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-~~~~~v~~s----p~~~--~lla~s~-d---g~I~i~D~~t-~~~~~~l~~  677 (792)
                      ..+|+...+++-|++||+. |+.+..+. +....+..-    ..++  .+++++. +   ..|.+|.+.. ...+..+..
T Consensus        40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~  118 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD  118 (353)
T ss_dssp             GCEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred             ccEEEEEcCcCCEEEEcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence            3466677778789999996 77776665 344443322    1222  2444443 2   3677776642 233333332


Q ss_pred             C-------CCCeEEEEE--cC-CCCEEEEEeC-C-eEEEEECCCCCC----cceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003842          678 H-------TKPIDSVCW--DP-SGELLASVSE-D-SVRVWTVGSGSE----GECVHELSCNGNKFHSCVFHPTYPSLLVI  741 (792)
Q Consensus       678 h-------~~~V~sv~~--sp-dg~~Las~s~-d-~I~IwDl~s~~~----~~~i~~~~~~~~~i~si~fspdg~~L~sg  741 (792)
                      .       ...+..+|+  ++ +|.+.+.... + .+..|.+.....    ...++.+. ....+..|++......|+++
T Consensus       119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~Lyis  197 (353)
T d1h6la_         119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYIA  197 (353)
T ss_dssp             SSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEEE
T ss_pred             cccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEEe
Confidence            1       123666776  55 4555444443 4 788887743322    23444444 35679999999999999999


Q ss_pred             EcCCeEEEEECCCC-----cEEEEc---ccCCCeEEEEEeC--CCC-EEEEEe-CCCcEEEeC
Q 003842          742 GCYQSLELWNMSEN-----KTMTLT---AHEGLIAALAVST--ETG-YVASAS-HDKFVKLWK  792 (792)
Q Consensus       742 s~dg~I~IwDl~~~-----~~~~~~---~h~~~V~sl~fsp--dg~-~LaSgs-~DG~I~IWd  792 (792)
                      -.+..|+.+++...     ..+...   .....+..|++-.  ++. ||++.+ .|++..|||
T Consensus       198 EE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd  260 (353)
T d1h6la_         198 EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE  260 (353)
T ss_dssp             ETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             cCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence            99888887776422     222221   2356788887643  333 554443 467788874

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.33  E-value=2.1  Score=44.77  Aligned_cols=54  Identities=15%  Similarity=0.171  Sum_probs=40.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--------cCCCCEEEEEECCC
Q 003842          512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--------EHSSLITDVRFSPS  565 (792)
Q Consensus       512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~--------~h~~~V~~i~fspd  565 (792)
                      -...++|+|.|||++|++--.+|+|++++..++.......        .-......|+|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4578899999999988877557999999987765433221        12356789999985

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.31  E-value=0.27  Score=50.70  Aligned_cols=177  Identities=12%  Similarity=0.061  Sum_probs=99.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDT---------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD  584 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t---------~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~  584 (792)
                      ....++++....+||.|+.++ ++|..++.         ..........-..|..++|+.+  .|++. .++.+..++..
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~  113 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLE  113 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESS
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEee
Confidence            466788888777888888775 56665321         1111111112236889999755  45554 45568888887


Q ss_pred             CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE--------eeCCeeEEEEecCCCEEEEEE
Q 003842          585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--------FKGGTAQMRFQPHLGRYLAAA  656 (792)
Q Consensus       585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~--------~~~~~~~v~~sp~~~~lla~s  656 (792)
                      .- ............+..+.++|.   .++....++.+.++++..++....        ......+++|++.+..++++.
T Consensus       114 ~l-~~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         114 EL-SEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             ST-TCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             cc-ccccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            62 333444445567888998875   344666799999999998864332        234455566665555555543


Q ss_pred             cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 003842          657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS  698 (792)
Q Consensus       657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s  698 (792)
                      .+..-.--++.....+.........|.+|.|..+..++++.+
T Consensus       190 g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         190 NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence            221111111111100000011234578899987777766553

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.33  Score=46.98  Aligned_cols=201  Identities=9%  Similarity=-0.042  Sum_probs=90.1

Q ss_pred             cEEEEeCCCCCce-eEEecccCCCeEEEEEcCCCCeEEEEEeC---------CCcEEEEEcCCCeeEEEeeCC---eeEE
Q 003842          577 TVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDG---------DGEIRYWSINNGSCTRVFKGG---TAQM  643 (792)
Q Consensus       577 ~V~IWdl~s~~~~-i~~~~~h~~~V~sl~fspd~~~ll~sgs~---------Dg~I~iwdl~~~~~~~~~~~~---~~~v  643 (792)
                      .|.+||+.+.... +..+......- +++..  +..+++.|+.         -..+.+||..+.+....-...   ....
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~   96 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG   96 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             eEEEEECCCCeEEECCCCCCcccee-EEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence            4789999873221 11111111122 22222  3456656553         246778888877655432111   1111


Q ss_pred             EEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC------eEEEEECCCCC
Q 003842          644 RFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED------SVRVWTVGSGS  711 (792)
Q Consensus       644 ~~sp~~~~lla~s~d-----g~I~i~D~~t~~~~~~l~~h~~-~V~sv~~spdg~~Las~s~d------~I~IwDl~s~~  711 (792)
                      +...++..++.++.+     ..+..+|..+............ .-.+++.. ++.+++.++.+      .+..||..+..
T Consensus        97 ~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~  175 (288)
T d1zgka1          97 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNE  175 (288)
T ss_dssp             EEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             ccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeeccccc
Confidence            222233334443332     2455677776644322111111 11122222 34444444432      47788876531


Q ss_pred             CcceEEEeecC--CCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEEcccCC-Ce-EEEEEeCCCCEEEEE
Q 003842          712 EGECVHELSCN--GNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHEG-LI-AALAVSTETGYVASA  782 (792)
Q Consensus       712 ~~~~i~~~~~~--~~~i~si~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~~~~h~~-~V-~sl~fspdg~~LaSg  782 (792)
                          .......  .....+++. .++..++.++.+     ..+.+||..+.+...+..... .. .+++. .++++++.|
T Consensus       176 ----~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~G  249 (288)
T d1zgka1         176 ----WRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLG  249 (288)
T ss_dssp             ----EEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEC
T ss_pred             ----cccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEe
Confidence                1111111  111122222 344555555544     367888988877665432211 11 23333 367788888


Q ss_pred             eCCCc
Q 003842          783 SHDKF  787 (792)
Q Consensus       783 s~DG~  787 (792)
                      +.++.
T Consensus       250 G~~~~  254 (288)
T d1zgka1         250 GYDGH  254 (288)
T ss_dssp             CBCSS
T ss_pred             cCCCC
Confidence            76543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.34  E-value=1.7  Score=40.32  Aligned_cols=182  Identities=13%  Similarity=0.150  Sum_probs=93.0

Q ss_pred             CCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEE-ecCCCEEEEEEc------CCeEEEEECCCCeEEEEecCCC-
Q 003842          608 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF-QPHLGRYLAAAA------ENVVSILDAETQACRLSLQGHT-  679 (792)
Q Consensus       608 d~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~-sp~~~~lla~s~------dg~I~i~D~~t~~~~~~l~~h~-  679 (792)
                      +++.+++.+...|.+.++-+..++.++..+.++..... .+.-+++..+-.      -..|++.++...-....+..-. 
T Consensus        24 ~~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~  103 (313)
T d2hu7a1          24 DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKP  103 (313)
T ss_dssp             TTTEEEEEEEETTEEEEEEESSSSCEECCSSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCS
T ss_pred             cCCcEEEEEeccceEEEEEEeCCEEEEEecccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCce
Confidence            45667778878999999999888877766665544322 222223322221      1234444444222222333221 


Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCeEEEEECCCCCCcceEEEee-------cCCCceEEEEE-eCCCCEEEEEEc-CCeEEE
Q 003842          680 KPIDSVCWDPSGELLASVS-EDSVRVWTVGSGSEGECVHELS-------CNGNKFHSCVF-HPTYPSLLVIGC-YQSLEL  749 (792)
Q Consensus       680 ~~V~sv~~spdg~~Las~s-~d~I~IwDl~s~~~~~~i~~~~-------~~~~~i~si~f-spdg~~L~sgs~-dg~I~I  749 (792)
                      -.|.+++++ +.+.+++|+ .|...+|-++.++. +.+..+.       .....|..+.| .+....++++.- .|.++|
T Consensus       104 vRI~S~~yd-dk~vvF~Gased~~~LYviegGkl-rkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri  181 (313)
T d2hu7a1         104 MRILSGVDT-GEAVVFTGATEDRVALYALDGGGL-RELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV  181 (313)
T ss_dssp             BEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEE-EEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEE
T ss_pred             EEEEEeeec-CceEEEecccCCceEEEEEeCCce-eeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEE
Confidence            335555553 233444444 45777776665522 1111111       12233444433 333334555555 566666


Q ss_pred             EECCCCc---------------------------------EEEEcc--------cCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003842          750 WNMSENK---------------------------------TMTLTA--------HEGLIAALAVSTETGYVASASHDKFV  788 (792)
Q Consensus       750 wDl~~~~---------------------------------~~~~~~--------h~~~V~sl~fspdg~~LaSgs~DG~I  788 (792)
                      ++...+.                                 .-.+.-        ..-.|+-+-+.||+++++.+-.||.-
T Consensus       182 ~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s  261 (313)
T d2hu7a1         182 FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRS  261 (313)
T ss_dssp             ECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEE
T ss_pred             ecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCch
Confidence            6655432                                 111100        01234455678999998888899987


Q ss_pred             EEe
Q 003842          789 KLW  791 (792)
Q Consensus       789 ~IW  791 (792)
                      ++|
T Consensus       262 ~lF  264 (313)
T d2hu7a1         262 AVF  264 (313)
T ss_dssp             EEE
T ss_pred             hee
Confidence            776

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.13  E-value=3.8  Score=41.62  Aligned_cols=175  Identities=15%  Similarity=0.059  Sum_probs=101.3

Q ss_pred             CEEEEEECCCCCeEEEEeCCCcEEEEeCCC----------CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEE
Q 003842          556 LITDVRFSPSMPRLATSSFDKTVRVWDADN----------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW  625 (792)
Q Consensus       556 ~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s----------~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iw  625 (792)
                      ...-++.+....+|++|+.++ ++|..+..          +.......  .-..|..++|+.+  .+++.  .++.+..+
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~--~~~~l~~~  110 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVS--TRNALYSL  110 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEE--ESSEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEE--eCCCEEEE
Confidence            345667777666888888776 56665421          11111111  1236888999754  34433  35678888


Q ss_pred             EcCCCeeE---EEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-----CCCCCeEEEEEcCCCCEEEEE
Q 003842          626 SINNGSCT---RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-----GHTKPIDSVCWDPSGELLASV  697 (792)
Q Consensus       626 dl~~~~~~---~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~-----~h~~~V~sv~~spdg~~Las~  697 (792)
                      +...-...   ..+..+...+.+.|  ..+++...++.+.++++..++......     .-...+.|++|++.|+.++++
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred             EeeccccccccccccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEe
Confidence            87664333   23344555566555  578888889999999998875432211     123568889999888888877


Q ss_pred             eCCeEEEE-ECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003842          698 SEDSVRVW-TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG  742 (792)
Q Consensus       698 s~d~I~Iw-Dl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs  742 (792)
                      ..+...+. ++...   ..+.........+.++.|-.+..++++-+
T Consensus       189 ~g~~~q~k~~i~~~---~~~~~p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         189 RNGEMEKQFEFSLP---SELEELPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             ETTEEEEEEEECCC---HHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CCCceeeccCCCCc---cccCCCcCCCcceeEEEEecCceEEEEEC
Confidence            65533221 22211   11111112234567777776666655553

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=91.19  E-value=2  Score=41.27  Aligned_cols=221  Identities=13%  Similarity=0.002  Sum_probs=99.1

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003842          514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF  593 (792)
Q Consensus       514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~  593 (792)
                      .|..|+....  +.+.-. ||.|+.|-....-.+-.-......|..|+.-.. ..++  -.|+.++.|.....+.... .
T Consensus        27 ~i~~va~G~~--h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~-~~~a--l~dg~v~~wG~~~~gq~~~-~   99 (273)
T d1jtdb_          27 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLA--LKDGEVIAWGGNEDGQTTV-P   99 (273)
T ss_dssp             SEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSS-EEEE--EETTEEEEEECCTTSTTCC-C
T ss_pred             CcEEEEccCC--EEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCC-ceee--eeeeeeeccCCCcceeecc-c
Confidence            3666655322  333334 789999976543322222222334555554222 1222  2489999998764332211 1


Q ss_pred             cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003842          594 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL  673 (792)
Q Consensus       594 ~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~  673 (792)
                      ......+..++....  ..+ .. .|+.++.|.................+.....+.+.++...++.++.|.........
T Consensus       100 ~~~~~~~~~i~~~~~--~~~-~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~G~~~~g~~~  175 (273)
T d1jtdb_         100 AEARSGVDAIAAGAW--ASY-AL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTT  175 (273)
T ss_dssp             GGGGSSCCEEEEETT--EEE-EE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEETTEEEEEECCTTSTTS
T ss_pred             cccccceeEEeeecc--ccc-cc-ccccceecccCCCCceeeeccCCceEEEEeccceeeeeecccceeEeecccCCccc
Confidence            112233444444322  222 22 48899999755432211111111111111112333444557888888654432111


Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003842          674 SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       674 ~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~  753 (792)
                      ........|..|+...  .+.+.-.++.|+.|=.........   .......|..|+-.... .++ . .||.|+.|-..
T Consensus       176 ~~~~~~~~v~~Is~G~--~h~~~l~dG~v~~WG~n~~Gql~~---~~~~~~~v~~I~~G~~~-~~~-l-~~g~v~~WG~~  247 (273)
T d1jtdb_         176 VPAEAQSGVDDVAGGI--FHSLALKDGKVIAWGDNRYKQTTV---PTEALSGVSAIASGEWY-SLA-L-KNGKVIAWGSS  247 (273)
T ss_dssp             CCGGGSSSEEEEEECS--SEEEEEETTEEEEEECCTTSTTCC---CGGGGSSCCEEEECSSC-EEE-E-ETTEEEEESTT
T ss_pred             ccccccCCccceeccc--eeeEEEecCcEEEcCCCCCCccCC---CccCCCCcEEEEeCcce-EEE-E-ECCEEEEECCC
Confidence            1112334577776543  233333444888886543211110   00111234455433222 233 3 47899999543

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.77  E-value=8.1  Score=38.05  Aligned_cols=231  Identities=7%  Similarity=0.032  Sum_probs=122.2

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCc----eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE---EeCCCC-----Cce
Q 003842          522 SDGKLLATGGHDKKAVLWHTDTLK----SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV---WDADNP-----GYS  589 (792)
Q Consensus       522 pdg~~Lasgs~Dg~I~vWdl~t~~----~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I---Wdl~s~-----~~~  589 (792)
                      ++...+++-+.+|.|+--++++.+    .-..++ ..+.+..+........|+.-+..|.++.   |++...     +..
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k-~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~p   81 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH   81 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc-CCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccccc
Confidence            466678888899988866543211    001122 2334544444444445666666776554   444421     222


Q ss_pred             eEEec--ccCCCeEEEE-EcC-CCCeEEEEEeCCCcEEEEEcCCCee------EE--EeeC--CeeEEEEecCCCEEEEE
Q 003842          590 LRTFM--GHSASVMSLD-FHP-NKDDLICSCDGDGEIRYWSINNGSC------TR--VFKG--GTAQMRFQPHLGRYLAA  655 (792)
Q Consensus       590 i~~~~--~h~~~V~sl~-fsp-d~~~ll~sgs~Dg~I~iwdl~~~~~------~~--~~~~--~~~~v~~sp~~~~lla~  655 (792)
                      +..+.  .....|..+. ..+ ....+++..+..|.++..++.....      ..  .++.  ....+.+......++.+
T Consensus        82 i~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~  161 (323)
T d1wp5a_          82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV  161 (323)
T ss_dssp             GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred             ceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEE
Confidence            22111  1233444333 322 1233555778899999998754321      11  1222  33445566667889999


Q ss_pred             EcCCeEEEEECCCCe-------EEEEecC-CCCCeEE-EEEcCCCCEEEEEeCC-eEEEEECCCCC----CcceEEE---
Q 003842          656 AAENVVSILDAETQA-------CRLSLQG-HTKPIDS-VCWDPSGELLASVSED-SVRVWTVGSGS----EGECVHE---  718 (792)
Q Consensus       656 s~dg~I~i~D~~t~~-------~~~~l~~-h~~~V~s-v~~spdg~~Las~s~d-~I~IwDl~s~~----~~~~i~~---  718 (792)
                      +..|.+..|+...-.       -+.-+.- ....|.+ +.+.+++..|++.+.. ..+...+....    ...-+..   
T Consensus       162 t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k~  241 (323)
T d1wp5a_         162 THNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRE  241 (323)
T ss_dssp             ETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCC
T ss_pred             EecceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccchhhccccccccccccccc
Confidence            999999999865321       1221221 2234444 4455566777777666 66665543321    1111222   


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003842          719 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS  753 (792)
Q Consensus       719 ~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~  753 (792)
                      .......+..+....+...|+..+..|.+.-.++.
T Consensus       242 ~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~  276 (323)
T d1wp5a_         242 LKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG  276 (323)
T ss_dssp             CSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred             cccccceeeeeEecCCCCEEEEEeCCCEEEEEEhh
Confidence            22233446666666677778888888876655554

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=90.74  E-value=1.7  Score=41.78  Aligned_cols=235  Identities=13%  Similarity=0.054  Sum_probs=108.8

Q ss_pred             eEEEEECCC-CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEE
Q 003842          535 KAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLI  613 (792)
Q Consensus       535 ~I~vWdl~t-~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll  613 (792)
                      +|+.|--.. +............|..|+--..  ..+... ||.|+.|-....+..- .-......|..|+.-  ..+.+
T Consensus         5 sv~~WG~~~~~~~~~~~~~~~~~i~~va~G~~--h~~al~-dG~v~~wG~N~~GQlG-~~~~~~~~v~~v~~G--~~~~~   78 (273)
T d1jtdb_           5 SVVAWGGNNDWGEATVPAEAQSGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLT-MPAATQSGVDAIAAG--NYHSL   78 (273)
T ss_dssp             EEEEESSCCSSSTTCCCGGGSSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTS-CCGGGGSCCCEEEEC--SSEEE
T ss_pred             EEEEECCCCCCCceeccccCCCCcEEEEccCC--EEEEEE-CCEEEEEeCCCCCcee-eeecccccceEEecC--CCcee
Confidence            577775332 1111122233456888876322  333334 8999999876643321 111223345555542  22333


Q ss_pred             EEEeCCCcEEEEEcCCCeeEE---EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 003842          614 CSCDGDGEIRYWSINNGSCTR---VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS  690 (792)
Q Consensus       614 ~sgs~Dg~I~iwdl~~~~~~~---~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd  690 (792)
                      +.  .|+.++.|.....-...   .....+..+....  ...+ ...|+.+..|.................|..++-  .
T Consensus        79 al--~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~--~~~~-~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~--~  151 (273)
T d1jtdb_          79 AL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASY-ALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDG--G  151 (273)
T ss_dssp             EE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEET--TEEE-EEETTEEEEEECCTTSTTSCCGGGGSSEEEEEE--C
T ss_pred             ee--eeeeeeccCCCcceeeccccccccceeEEeeec--cccc-ccccccceecccCCCCceeeeccCCceEEEEec--c
Confidence            32  38999999865421111   1112222333222  2222 234788888865432211111111233444432  2


Q ss_pred             CCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-cEEEEcccCCCeEE
Q 003842          691 GELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN-KTMTLTAHEGLIAA  769 (792)
Q Consensus       691 g~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~-~~~~~~~h~~~V~s  769 (792)
                      ...++....+.++.|-........   ........|..++..  ..+.++.. ||.|+.|=.... .+-........|..
T Consensus       152 ~~~~~~~~~g~~~~~G~~~~g~~~---~~~~~~~~v~~Is~G--~~h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~  225 (273)
T d1jtdb_         152 VYTALAVKNGGVIAWGDNYFGQTT---VPAEAQSGVDDVAGG--IFHSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSA  225 (273)
T ss_dssp             SSEEEEEETTEEEEEECCTTSTTS---CCGGGSSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCE
T ss_pred             ceeeeeecccceeEeecccCCccc---ccccccCCccceecc--ceeeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEE
Confidence            334444445588888765432111   111123345555543  23333333 789999955332 22122223345666


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEe
Q 003842          770 LAVSTETGYVASASHDKFVKLW  791 (792)
Q Consensus       770 l~fspdg~~LaSgs~DG~I~IW  791 (792)
                      |+-... ..++.  .||.|+.|
T Consensus       226 I~~G~~-~~~~l--~~g~v~~W  244 (273)
T d1jtdb_         226 IASGEW-YSLAL--KNGKVIAW  244 (273)
T ss_dssp             EEECSS-CEEEE--ETTEEEEE
T ss_pred             EEeCcc-eEEEE--ECCEEEEE
Confidence            664432 23333  37889888