Query 003852
Match_columns 791
No_of_seqs 252 out of 757
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 13:11:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00151 potassium transporter 100.0 4E-258 9E-263 2184.5 68.2 771 12-791 63-852 (852)
2 PLN00150 potassium ion transpo 100.0 2E-256 4E-261 2171.7 68.1 768 12-791 8-779 (779)
3 PLN00148 potassium transporter 100.0 9E-254 2E-258 2150.8 66.0 746 43-791 15-785 (785)
4 PLN00149 potassium transporter 100.0 1E-252 3E-257 2143.9 67.8 749 40-791 11-779 (779)
5 TIGR00794 kup potassium uptake 100.0 2E-230 3E-235 1949.8 60.8 687 52-791 1-688 (688)
6 PRK10745 trkD potassium transp 100.0 1E-207 2E-212 1739.6 55.3 606 51-791 11-622 (622)
7 PF02705 K_trans: K+ potassium 100.0 4E-198 9E-203 1649.8 42.3 532 53-624 1-534 (534)
8 COG3158 Kup K+ transporter [In 100.0 2E-192 5E-197 1578.2 51.8 609 49-790 15-626 (627)
9 TIGR00911 2A0308 L-type amino 91.3 0.56 1.2E-05 54.1 7.9 87 219-309 165-255 (501)
10 COG0531 PotE Amino acid transp 82.6 9.9 0.00021 42.6 11.0 177 218-400 133-324 (466)
11 TIGR00909 2A0306 amino acid tr 77.8 26 0.00056 39.4 12.3 168 220-400 134-316 (429)
12 TIGR00907 2A0304 amino acid pe 77.5 13 0.00029 42.6 10.1 21 500-520 454-474 (482)
13 TIGR03813 put_Glu_GABA_T putat 76.8 34 0.00073 39.4 13.1 19 500-518 434-452 (474)
14 PF13520 AA_permease_2: Amino 76.4 7.5 0.00016 43.3 7.6 247 195-457 91-367 (426)
15 TIGR00930 2a30 K-Cl cotranspor 74.2 24 0.00052 44.9 11.9 25 219-243 203-227 (953)
16 PRK10435 cadB lysine/cadaverin 67.3 92 0.002 35.5 13.6 23 222-244 124-146 (435)
17 PRK10655 potE putrescine trans 66.1 76 0.0017 36.0 12.7 43 221-263 125-170 (438)
18 PRK15049 L-asparagine permease 60.8 46 0.00099 38.9 9.9 22 222-243 147-168 (499)
19 PF14362 DUF4407: Domain of un 59.0 76 0.0016 34.6 10.6 86 439-524 13-111 (301)
20 KOG3145 Cystine transporter Cy 55.0 18 0.00038 40.3 4.8 40 284-324 287-343 (372)
21 TIGR00908 2A0305 ethanolamine 53.5 91 0.002 35.4 10.5 24 221-244 123-146 (442)
22 TIGR00906 2A0303 cationic amin 48.8 2.9E+02 0.0062 33.0 14.0 45 219-263 161-208 (557)
23 PRK10249 phenylalanine transpo 44.7 1.5E+02 0.0032 34.2 10.5 102 222-325 138-247 (458)
24 PRK11357 frlA putative fructos 44.0 3E+02 0.0065 31.3 12.8 45 220-264 128-175 (445)
25 PRK10746 putative transport pr 43.1 1.8E+02 0.0039 33.6 10.9 30 43-78 11-40 (461)
26 PRK11021 putative transporter; 43.0 5.3E+02 0.011 29.0 14.4 27 219-245 115-141 (410)
27 COG4059 MtrE Tetrahydromethano 43.0 22 0.00047 38.0 3.1 30 496-525 258-287 (304)
28 PRK11387 S-methylmethionine tr 38.9 2.2E+02 0.0047 32.9 10.7 29 43-77 15-43 (471)
29 TIGR00905 2A0302 transporter, 37.2 1.6E+02 0.0036 33.9 9.4 43 358-400 278-320 (473)
30 TIGR03810 arg_ornith_anti argi 36.8 4.9E+02 0.011 30.0 13.1 45 357-401 273-317 (468)
31 PRK10238 aromatic amino acid t 36.4 2.2E+02 0.0047 32.8 10.2 44 295-339 206-251 (456)
32 PRK10644 arginine:agmatin anti 35.5 1.5E+02 0.0032 33.8 8.6 23 221-243 127-149 (445)
33 TIGR00910 2A0307_GadC glutamat 33.7 3.8E+02 0.0082 31.6 11.7 46 297-342 202-249 (507)
34 PF06570 DUF1129: Protein of u 33.3 1.9E+02 0.0041 30.0 8.2 21 499-519 179-199 (206)
35 COG2179 Predicted hydrolase of 33.2 10 0.00022 38.9 -1.0 68 719-787 47-118 (175)
36 PRK10580 proY putative proline 32.1 2.8E+02 0.0061 31.8 10.1 24 498-521 423-446 (457)
37 TIGR01773 GABAperm gamma-amino 27.7 9.6E+02 0.021 27.4 13.8 25 221-245 128-152 (452)
38 PRK11049 D-alanine/D-serine/gl 27.6 6.3E+02 0.014 29.2 12.1 104 296-400 218-332 (469)
39 KOG3643 GABA receptor [Signal 25.1 52 0.0011 38.4 2.7 90 394-487 225-324 (459)
40 PF05545 FixQ: Cbb3-type cytoc 22.8 73 0.0016 25.8 2.4 28 509-536 20-47 (49)
41 PF08733 PalH: PalH/RIM21; In 21.3 6.6E+02 0.014 28.5 10.4 137 381-526 168-323 (348)
42 TIGR03428 ureacarb_perm permea 21.2 1.3E+03 0.028 26.6 15.7 25 219-243 144-168 (475)
43 PF00324 AA_permease: Amino ac 20.9 73 0.0016 36.6 2.8 34 292-325 203-238 (478)
44 PF05297 Herpes_LMP1: Herpesvi 20.8 33 0.00071 38.0 0.0 60 463-525 126-190 (381)
No 1
>PLN00151 potassium transporter; Provisional
Probab=100.00 E-value=4.1e-258 Score=2184.51 Aligned_cols=771 Identities=48% Similarity=0.858 Sum_probs=700.6
Q ss_pred ccccccceeccccCCCCcchhhhhcccc-cc--cchhHHHHHHHHHhhcceeecccccchhhhhhcccCC-CCCCcCcEe
Q 003852 12 ETNKGSMWVLDQKLDQPMDEEAGRLRNM-YR--EKFSSLLLLRFAFQSLGVVYGDLGTSPLYVFYNTFPH-GIDDPEDII 87 (791)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~La~~slGVVyGDIGTSPLYv~~~~f~~-~~~~~~~vl 87 (791)
+..++||||++++.|+ ++.|+++++++ +| ++.++|+++.|||||+|||||||||||||||+++|++ +.+++|||+
T Consensus 63 ~~~~~~~~~~~~~~d~-~~~e~~~~~~~~~~~~~~~~~w~~l~La~qslGVVyGDIGTSPLYv~~s~F~~~~~~~~~dIl 141 (852)
T PLN00151 63 GNMRRRLIRTPPRVDS-FDVEAMEIPGAHRHDSEDLSVGRTLALAFQTLGVVFGDVGTSPLYTFSVMFSKVPIKSEEDVL 141 (852)
T ss_pred cchhhhHhhCCCccch-hhhcccccccccccccccccHHHHHHHHHhhhceEeCcCCCCHHHHHHHHhcCCCCCChhhee
Confidence 4457899999999999 99999998777 32 2667788899999999999999999999999999987 347999999
Q ss_pred hhHHHHHHHHHHhhhheeeEEEEeecCCCCChHHHHHHhhhccccccccCCCCCCccchhhccccccc-cchhhhHHHHH
Q 003852 88 GALSLIIYSLTLIPLLKYVFIVCRANDSGQGGTFALYSLLCRHAKVITIPNQHRTDEELTTYSRSTFH-EKSFAAKTKRW 166 (791)
Q Consensus 88 GvlSLIfWtLtliv~iKYv~ivLrAdn~GEGG~fALysLl~r~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~ 166 (791)
|+|||||||||||+++|||+|||||||||||||||||||+|||+|++++||||++|+++|+|+.+.++ +.+++.++|++
T Consensus 142 GvLSLIfWtLtLiv~iKYV~iVLrAdd~GEGGtfALySLl~R~a~~~llpnq~~~de~ls~~~~~~~~~~~~~~~~~k~~ 221 (852)
T PLN00151 142 GALSLVLYTLILIPLAKYVLVVLWANDDGEGGTFALYSLICRHAKVSLLPNQLPSDERISSFRLKLPTPELERSLKIKER 221 (852)
T ss_pred eehHHHHHHHHHHHHHhheeEEEEecCCCCchHHHHHHHHHHhcCcCccccccchHhhhhhhcccCCccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988766 77778899999
Q ss_pred hhhhhhhHHHHHHHHhHhhhhhhcCccccchhhhhhhhccccccCCCCCCceEehhHHHHHHHHHhhhcccccccccchh
Q 003852 167 LEHQTFRKNALLMLVLVGTCMVIGDGILTPAISVLSASGGIKVDHPHMSNGVVVLVAVVILVGLFSLQHYGTDRVGWLFA 246 (791)
Q Consensus 167 le~~~~~~~~l~~l~l~G~~m~~gDGviTPAISVLSAVeGl~v~~p~l~~~~Vv~is~~ILv~LF~iQ~~GT~kvg~~Fg 246 (791)
||||+++|.+++++|++|+||+|||||||||||||||||||++..|++++++||||||+||++||++||+||+|||++||
T Consensus 222 lE~s~~~k~~ll~l~l~GtamviGDGvlTPAISVLSAVeGL~v~~p~l~~~~VV~Is~~ILv~LF~~Q~~GT~kVg~~Fg 301 (852)
T PLN00151 222 LETSSLLKKLLLLLVLAGTSMVIGDGVLTPAMSVMSAVSGLKVGVPGFGQDAVVMISVAFLVILFSVQRFGTSKVGFAFG 301 (852)
T ss_pred hhhhHHHHHHHHHHHHHhHHHHhcccccccchhhhhhhccccccCCcCCCCeehhHHHHHHHHHHHHHhccchhhhhhhc
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhccccCcceeeecChHHHHHHHHhcCcceeeeecceeeeeccccccccCCCCCCCcceehhhhH
Q 003852 247 PIVLLWFLLIGGIGMLNIWKYDSSVLKAFSPVYIYRYFRRGGRDGWTSLGGIMLSITGTEALFADLAHFPVSAIQIAFTV 326 (791)
Q Consensus 247 PIm~vWf~~i~~~GiynI~~~~P~Vl~AlnP~ya~~f~~~~g~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~ 326 (791)
|||++||++|+++|+|||++|||+||+||||+|+++||++||++||.+||||+||+||+|||||||||||++|||+||++
T Consensus 302 PImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~gw~~LGgVvLciTGaEALfADLGHFg~~sIqiaw~~ 381 (852)
T PLN00151 302 PALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTKAWSALGGCVLCATGSEAMFADLGYFSVRSIQLAFTC 381 (852)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCceEEEecceeeeeccchhhhcccCCCCccceeeeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccchhhhccccccccccccccccCcchHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHcCCCCceeEEec
Q 003852 327 VVFPCLLLAYSGQAAYLMNHQDHVVDAFYRSIPDSIYWPVFIVATAAAIVASQATISATFSIIKQALALGCFPRVKVVHT 406 (791)
Q Consensus 327 ~V~P~L~L~Y~GQaA~ll~~p~~~~npFy~~~P~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hT 406 (791)
+|||||+|||+||||||++||++++||||+++|+|++||+|++||+||||||||+|||+||+++||++||||||+||+||
T Consensus 382 ~V~P~LlL~Y~GQaA~L~~~p~~~~npFy~svP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHT 461 (852)
T PLN00151 382 LVLPCLLLAYMGQAAYLMKNPDSAEQIFFSSVPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHT 461 (852)
T ss_pred hHHHHHHHHHcchHHHHhcCcccccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCceeehhhHHHHHHHhhheeEeecCchhhhhhhhchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 003852 407 SKKFLGQIYIPDINWILMILCIAVTAGFKNQSQIGNAYGTAVVIVMLATTLLMTLIMILVWRCHWILVLIFTALSLVVEC 486 (791)
Q Consensus 407 S~~~~GQIYIP~vNw~Lmi~~l~vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~ 486 (791)
|++++||||||+|||+||++|+++|++||||++||||||+||++||++||||+++||+.+||||++++++|+++|+++|+
T Consensus 462 S~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYGiAV~~vM~iTT~L~~lV~~~~W~~~~~~~~~f~~~F~~ie~ 541 (852)
T PLN00151 462 SRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYGIAEVGVMMVSTILVTLVMLLIWQTNIFLVLCFPVVFLSVEL 541 (852)
T ss_pred CCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCcHHHHHHHHHHHhhhhhhHhHHHHHHHHHhcCCChHHHHhcCCCCCCceecceEEEEecCCCCchh
Q 003852 487 TYFSAVLFKVDQGGWVPLVIAAAFLVIMYVWHYGTVKRYEFEMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPH 566 (791)
Q Consensus 487 ~f~sa~l~Kv~~GGW~pl~la~v~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~vf~t~~~~gvP~ 566 (791)
+|||||+.||+||||+||++|++++++|++||||++++|+++.+|++|++++.++.++.+++||||+|+|||++.+|+|+
T Consensus 542 ~f~sA~l~Ki~~GGW~Pl~la~v~~~iM~~W~yG~~~~~~~~~~~~vs~~~~~~L~~~~~~~RVpGiglf~t~~~~gvP~ 621 (852)
T PLN00151 542 VFFSSVLSSVGDGGWIPLVFASVFLCIMYIWNYGSKLKYQSEVRQKLSMDLMRELGSNLGTIRAPGIGLLYNELVKGIPA 621 (852)
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhcccCCCcccCcEEEEecCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred hHHHHhhhCCccceEEEEEEEEEeeccccCCCceEEEEEecCCCCcEEEEEEEeecccCCC-ChHHHHHHHHHHHHHHHH
Q 003852 567 IFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHK-KDENFEKKLFDSLFLFVR 645 (791)
Q Consensus 567 ~~~h~l~~~~~lh~~~Vfl~i~~~~vP~V~~~eR~~v~~~~~~~~~~yrv~~ryGy~d~~~-~~~~fe~~lv~~L~~FI~ 645 (791)
+|.||++|||++||++||||||++|+|+||++|||++++++++++++|||++||||||..+ ++++||++|+++|++|||
T Consensus 622 ~f~h~i~~~~alHe~~Vfv~ik~~~vP~V~~~eR~lv~ri~~~~~~~yr~vvrYGY~D~~~~~~~dFe~~Lv~~l~~fi~ 701 (852)
T PLN00151 622 IFGHFLTTLPAIHSTIIFVCIKYVPVPVVPQEERFLFRRVCPKDYHMFRCIARYGYKDVRKENHQAFEQLLIESLEKFIR 701 (852)
T ss_pred HHHHHHHhCCcccceEEEEEEEECcccccChhheEEEEEcCCCCCCEEEEEEEEeecccccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999976 789999999999999999
Q ss_pred hhhhccCC---CCCC-------CccccccccccccccccCC--CCCCCCCCccccccccCCCC-CcCCCccccccccCcc
Q 003852 646 LEAMMEGC---SDSD-------EYSLYGQQTLQSTDGLLNN--NGNSTSSNQDLTMSSVDSIV-PVKSPLHVNSTVMSSS 712 (791)
Q Consensus 646 ~e~~~~~~---~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~ 712 (791)
+|+..... ++++ +++..........+..... ......+........+.+.. +..++++|. +
T Consensus 702 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 775 (852)
T PLN00151 702 REAQERALESDGNDDTDDEDSVTSSRVLIAPNGSVYSLGVPLLADYRLTSKPIPEASTSEEVSPVLPSSSMSS------D 775 (852)
T ss_pred hhhhhccccccccccccccccccccccccCCCccccccccccccccccccccccccccccccccccccccccc------c
Confidence 98743211 1100 1111110000000000000 00000000000000000000 001222321 1
Q ss_pred cCCCcchHHHHHHHHHhHhCCcEEEeeecEEEecCCCchhHHHHHHHHHHHHHhhccCCCcccccCCCCeEeeeeEEEC
Q 003852 713 QMSSHTETDELEFLNSCRDAGVVHILGNTVVRASRGSKFYKKIAIDYIYAFLRKICRENSVIFNVPHESLLNVGQIFYV 791 (791)
Q Consensus 713 ~~~~~~v~eEl~~L~~A~eaGVvYIlG~~~vkar~~SsflKK~vIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVGMvYev 791 (791)
. +++++||+++|++|+|+||+||+||++||||++|+|+||++||++|+|||||||+|.++|+|||++|+||||+|||
T Consensus 776 ~--~~~~~~El~~l~~a~e~Gv~yilG~~~v~a~~~S~~~Kk~~in~~Y~fLRkN~R~~~~~L~iP~~~lleVGm~Y~v 852 (852)
T PLN00151 776 E--DQSLEYELSFIREAKESGVVYLLGHGDVRARKNSWFIKKLVINYFYAFLRKNCRRGIANLSVPHSNIMQVGMTYMV 852 (852)
T ss_pred c--CccHHHHHHHHHHHHHcCcEEEeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEeceEEEC
Confidence 1 5789999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>PLN00150 potassium ion transporter family protein; Provisional
Probab=100.00 E-value=2e-256 Score=2171.68 Aligned_cols=768 Identities=57% Similarity=1.007 Sum_probs=701.1
Q ss_pred ccccccceeccccCCCCcchhhhhccccc-ccchhHHHHHHHHHhhcceeecccccchhhhhhcccCC-CCCCcCcEehh
Q 003852 12 ETNKGSMWVLDQKLDQPMDEEAGRLRNMY-REKFSSLLLLRFAFQSLGVVYGDLGTSPLYVFYNTFPH-GIDDPEDIIGA 89 (791)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~La~~slGVVyGDIGTSPLYv~~~~f~~-~~~~~~~vlGv 89 (791)
|.+++||||+++++|+|+|+|++++.++| .++.+|+.++.|||||+|||||||||||||||+++|++ +.+++|||+|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~La~~alGVVyGDIGTSPLYv~~~~f~~~~~~~~~~ilGv 87 (779)
T PLN00150 8 ESNQGRLWDLDQRITRPLGVDADSVRSMYFSSPNWPKVIMHLAYQSLGVVYGDLGTSPLYVFKSTFANVGVKNNDDIIGA 87 (779)
T ss_pred CCCccchhhCCCCCCCccCcchhhcccccccccccHHHHHHHHHhccCeEeCcCccchHHHHHHHhcCCCCCCHHHhHhH
Confidence 45689999999999999999999999994 55899999999999999999999999999999999976 46899999999
Q ss_pred HHHHHHHHHHhhhheeeEEEEeecCCCCChHHHHHHhhhccccccccCCCCCCccchhhccccccccchhhhHHHHHhhh
Q 003852 90 LSLIIYSLTLIPLLKYVFIVCRANDSGQGGTFALYSLLCRHAKVITIPNQHRTDEELTTYSRSTFHEKSFAAKTKRWLEH 169 (791)
Q Consensus 90 lSLIfWtLtliv~iKYv~ivLrAdn~GEGG~fALysLl~r~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~le~ 169 (791)
|||||||||||+++|||+|||||||||||||||||||+|||+|++++|||++.|+++++|++. +..+..++|++|||
T Consensus 88 LSLIfWtLtLiv~iKYV~ivLrAdn~GEGGtfALysLl~r~aki~l~~~~~~~~~~~s~~~~~---~~~r~~~~k~~lE~ 164 (779)
T PLN00150 88 LSLIIYTLTIIPLIKYVFIVLRANDNGEGGSFALYSLLCRYCNISLLPNQHPTDVELTTYVVD---NMNRKTRIQRKLEN 164 (779)
T ss_pred HHHHHHHHHHHHHHhheeEEEEccCCCCcchhhHHHHHhhhcccccCCccccchhhhhhcccc---cchhhhHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999863 33344679999999
Q ss_pred hhhhHHHHHHHHhHhhhhhhcCccccchhhhhhhhccccccCCCCCCceEehhHHHHHHHHHhhhcccccccccchhhHH
Q 003852 170 QTFRKNALLMLVLVGTCMVIGDGILTPAISVLSASGGIKVDHPHMSNGVVVLVAVVILVGLFSLQHYGTDRVGWLFAPIV 249 (791)
Q Consensus 170 ~~~~~~~l~~l~l~G~~m~~gDGviTPAISVLSAVeGl~v~~p~l~~~~Vv~is~~ILv~LF~iQ~~GT~kvg~~FgPIm 249 (791)
|+.+|++++++|++|+||+||||+||||||||||||||++..|++++++|+||||+||++||++||+||+|||++|||||
T Consensus 165 ~~~~~~~l~~l~l~G~~m~~gDgviTPAISVLSAVeGL~v~~p~l~~~~Vv~is~~ILv~LF~iQ~~GT~kVg~~FgPIm 244 (779)
T PLN00150 165 SRVWQNVLLLIVLLGTCMVIGDGILTPSISVLSAVVGIKAASSGLDTNLVTIISCVILVILFSLQRFGTHKVSFLFAPIF 244 (779)
T ss_pred chHHHHHHHHHHHHHHHHHhcccccccchhhhhhhccccccCCCCCCCeehhhHHHHHHHHHHHHhccchhhhhhhccHH
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccccCcceeeecChHHHHHHHHhcCcceeeeecceeeeeccccccccCCCCCCCcceehhhhHHHH
Q 003852 250 LLWFLLIGGIGMLNIWKYDSSVLKAFSPVYIYRYFRRGGRDGWTSLGGIMLSITGTEALFADLAHFPVSAIQIAFTVVVF 329 (791)
Q Consensus 250 ~vWf~~i~~~GiynI~~~~P~Vl~AlnP~ya~~f~~~~g~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~ 329 (791)
++||++||++|+|||++|||+||+|+||+|+++||.+||++||.+||||+||+||+|||||||||||++|||+||+++||
T Consensus 245 ~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Iriaw~~~V~ 324 (779)
T PLN00150 245 LCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQGWESLGGIVLCMTGTEAMFADLGHFTVKSMQIAFTSLVY 324 (779)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCceEEEecceeeeecchhhhhccccCCCccceeeeehhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccchhhhccccccccccccccccCcchHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHcCCCCceeEEecCCc
Q 003852 330 PCLLLAYSGQAAYLMNHQDHVVDAFYRSIPDSIYWPVFIVATAAAIVASQATISATFSIIKQALALGCFPRVKVVHTSKK 409 (791)
Q Consensus 330 P~L~L~Y~GQaA~ll~~p~~~~npFy~~~P~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~ 409 (791)
|||+|||+||||||++||++.+||||+++|+|++||++++||+||||||||+|||+||+++||++||||||+||+|||++
T Consensus 325 P~LlL~Y~GQaA~ll~~p~~~~npFf~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~ 404 (779)
T PLN00150 325 PCLLLTYLGQAAYLVKHMEDVNDPFYRSLPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNK 404 (779)
T ss_pred HHHHHHHcchHHHHhcCcccccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceeehhhHHHHHHHhhheeEeecCchhhhhhhhchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 003852 410 FLGQIYIPDINWILMILCIAVTAGFKNQSQIGNAYGTAVVIVMLATTLLMTLIMILVWRCHWILVLIFTALSLVVECTYF 489 (791)
Q Consensus 410 ~~GQIYIP~vNw~Lmi~~l~vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~ 489 (791)
++||||||+|||+||++|+++|++||||++||||||+||++||++||||+++||+.+||||++++++|+++|+++|++||
T Consensus 405 ~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT~L~~~v~~~~W~~~~~~~~~f~~~f~~ie~~f~ 484 (779)
T PLN00150 405 VHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYGIAVVGVMIITTCLMTLVMIIIWRKHILLALLFFTVFAIIEGIYF 484 (779)
T ss_pred cCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhhhheehhhHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCcHHHHHHHHHHHhhhhhhHhHHHHHHHHHhcCCChHHHHhcCCCCCCceecceEEEEecCCCCchhhHH
Q 003852 490 SAVLFKVDQGGWVPLVIAAAFLVIMYVWHYGTVKRYEFEMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPHIFS 569 (791)
Q Consensus 490 sa~l~Kv~~GGW~pl~la~v~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~vf~t~~~~gvP~~~~ 569 (791)
|||+.||+||||+||++|++++++|++||||++++++++.+|++|+++|.++.++.++.||||+|+|||++++|+|++|.
T Consensus 485 sa~l~Ki~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~v~~~~~~~l~~~~~~~RvpG~~vf~t~~~~gvP~~f~ 564 (779)
T PLN00150 485 SAVLFKVTQGGWVPLVIAAVFGTVMYTWHYGTRKRYLYEMQHKVSVGWLLGLGPSLGLVRVPGIGLMYTDLAHGVPPLFS 564 (779)
T ss_pred HHHHhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHhhcccCCCcccCcEEEEEeCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999998888888889999999999999999999999
Q ss_pred HHhhhCCccceEEEEEEEEEeeccccCCCceEEEEEecCCCCcEEEEEEEeecccCCCChHHHHHHHHHHHHHHHHhhhh
Q 003852 570 HFITNLPAIHSVVVFVCVKYLPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKDENFEKKLFDSLFLFVRLEAM 649 (791)
Q Consensus 570 h~l~~~~~lh~~~Vfl~i~~~~vP~V~~~eR~~v~~~~~~~~~~yrv~~ryGy~d~~~~~~~fe~~lv~~L~~FI~~e~~ 649 (791)
||++|||++||++||+|||++|+|+||++||++++++++++|++|||++||||||..+++++||++|+++|++|||+|+.
T Consensus 565 h~v~~~~~lhe~~Vfl~i~~~~vP~V~~~eR~~v~~i~~~~~r~~r~vvryGy~d~~~d~~dFE~~LvesL~~FIr~e~~ 644 (779)
T PLN00150 565 HFITNLPAIHSTVVFVCIKYLPVNTVPQDERFLIRRIGPRAYSMYRCAARYGYTDLEKKDDNFEQLLIASLERFIEIESF 644 (779)
T ss_pred HHHHhCCcccceEEEEEEEECcccccChhheEEEEEecCCCceEEEEEEEEccCcCcccchHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999998899999999999999988999999999999999999874
Q ss_pred ccCCCCCCCccccccccccccccccCCCC--CCCCCCccccccccCCCCCcCCCccccccccCcccCCCcchHHHHHHHH
Q 003852 650 MEGCSDSDEYSLYGQQTLQSTDGLLNNNG--NSTSSNQDLTMSSVDSIVPVKSPLHVNSTVMSSSQMSSHTETDELEFLN 727 (791)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~eEl~~L~ 727 (791)
..+.+ +++++.....++...++...... +..........+.++...+..++++|. +. +++++||+++|+
T Consensus 645 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~v~eEl~~L~ 715 (779)
T PLN00150 645 REQSD-LESMAASWTPEELMGEGNSVGSGLFTQYDQSDINFATSQEWKRPSSQEDSVS------GH--SSDTQDEVAFLN 715 (779)
T ss_pred ccccc-ccccccccccccccccCCcccccccccccccccccccccccccccccccccc------cc--cccHHHHHHHHH
Confidence 32211 11222221110000000000000 000000000000000000111222321 11 578999999999
Q ss_pred HhHhCCcEEEeeecEEEecCCCchhHHHHHHHHHHHHHhhccCCCcccccCCCCeEeeeeEEEC
Q 003852 728 SCRDAGVVHILGNTVVRASRGSKFYKKIAIDYIYAFLRKICRENSVIFNVPHESLLNVGQIFYV 791 (791)
Q Consensus 728 ~A~eaGVvYIlG~~~vkar~~SsflKK~vIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVGMvYev 791 (791)
+|+|+||+||+||++||||++|||+||++||++|+|||||||+|.++|+|||+||+||||+|||
T Consensus 716 ~A~eaGVvYIlG~~~v~Ak~~Ss~~KK~vIN~~Y~FLRkNcR~~~~~L~IPh~~LleVGmvY~V 779 (779)
T PLN00150 716 KCKEAGVVYILGNNDVKARKDSGFFKKVIINYIYTFLRRISRDSEVVLNIPHECLLKVGMVYYV 779 (779)
T ss_pred HHHHcCcEEEeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCCccccCCChHHeEEeceEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999999997
No 3
>PLN00148 potassium transporter; Provisional
Probab=100.00 E-value=9.3e-254 Score=2150.79 Aligned_cols=746 Identities=52% Similarity=0.924 Sum_probs=682.7
Q ss_pred chhHHH---HHHHHHhhcceeecccccchhhhhhcccCCC---CCCcCcEehhHHHHHHHHHHhhhheeeEEEEeecCCC
Q 003852 43 KFSSLL---LLRFAFQSLGVVYGDLGTSPLYVFYNTFPHG---IDDPEDIIGALSLIIYSLTLIPLLKYVFIVCRANDSG 116 (791)
Q Consensus 43 ~~~~~~---~l~La~~slGVVyGDIGTSPLYv~~~~f~~~---~~~~~~vlGvlSLIfWtLtliv~iKYv~ivLrAdn~G 116 (791)
..+|+. ++.|||||+|||||||||||||||+++|+++ .+++|||+|+|||||||||||+++|||+|||||||||
T Consensus 15 ~~~w~~~~~~l~La~~alGVVyGDIGTSPLYv~~~~F~~~~~~~~~~~~ilGvLSLIfWtLtLiv~iKYV~ivlrAdn~G 94 (785)
T PLN00148 15 QLSWVNLSRNLLLAYQSFGVVYGDLSTSPLYVYKSTFSGKLQKHQNEETIFGAFSLIFWTFTLIPLLKYVTILLSADDNG 94 (785)
T ss_pred cchhhHHhHHHHHHHhcccEEeCcccccHHHHHHHHhcCCCCCCCCHHHHHhHHHHHHHHHHHHHHHhheEEEEEecCCC
Confidence 446666 7999999999999999999999999999752 3899999999999999999999999999999999999
Q ss_pred CChHHHHHHhhhccccccccCCCCCCccchhhccccccccchhhhHHHHHhhhhhhhHHHHHHHHhHhhhhhhcCccccc
Q 003852 117 QGGTFALYSLLCRHAKVITIPNQHRTDEELTTYSRSTFHEKSFAAKTKRWLEHQTFRKNALLMLVLVGTCMVIGDGILTP 196 (791)
Q Consensus 117 EGG~fALysLl~r~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~l~l~G~~m~~gDGviTP 196 (791)
||||||||||+|||+|++++||||++|+++++|++..+...+++.++|++||+|+++|.+++++|++|+||+||||+|||
T Consensus 95 EGG~fALysLl~r~~~~~~~pn~~~~d~~ls~~~~~~~~~~~~~~~~k~~lE~~~~~~~~ll~l~l~G~am~~gDgvlTP 174 (785)
T PLN00148 95 EGGTFALYSLLCRHAKLSLLPNQQAADEELSAYKYGPSTQTVGSSPLKRFLEKHKRLRTALLLVVLFGACMVIGDGVLTP 174 (785)
T ss_pred CchHHHHHHHHHHhcccccCccchhhhhhhhhhccCccccchhhhHHHHHhhhchHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999999999999999999999999988666655677889999999999999999999999999999999999
Q ss_pred hhhhhhhhccccccCCCCCCceEehhHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHhhhhhccccCcceeeecC
Q 003852 197 AISVLSASGGIKVDHPHMSNGVVVLVAVVILVGLFSLQHYGTDRVGWLFAPIVLLWFLLIGGIGMLNIWKYDSSVLKAFS 276 (791)
Q Consensus 197 AISVLSAVeGl~v~~p~l~~~~Vv~is~~ILv~LF~iQ~~GT~kvg~~FgPIm~vWf~~i~~~GiynI~~~~P~Vl~Aln 276 (791)
|||||||||||++..|++++++|+||||+||++||++||+||+|||++|||||++||++||++|+|||++|||+||+|||
T Consensus 175 AISVLSAVeGl~v~~p~~~~~~vv~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~Aln 254 (785)
T PLN00148 175 AISVLSSVSGLQVTETKLTDGELVLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALS 254 (785)
T ss_pred hHHHHHHhccceecCCCCCCCeehhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcC
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCcceeeeecceeeeeccccccccCCCCCCCcceehhhhHHHHHHHHhhhccchhhhccccccccccccc
Q 003852 277 PVYIYRYFRRGGRDGWTSLGGIMLSITGTEALFADLAHFPVSAIQIAFTVVVFPCLLLAYSGQAAYLMNHQDHVVDAFYR 356 (791)
Q Consensus 277 P~ya~~f~~~~g~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFy~ 356 (791)
|+|+++||.+||++||.+||||+||+||+|||||||||||++|||+||+++|||||+|||+||||||++||++++||||+
T Consensus 255 P~y~~~ff~~~~~~g~~~LGgV~L~iTGaEALyADlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFf~ 334 (785)
T PLN00148 255 PYYIIKFFRVTGKDGWISLGGILLSITGTEAMFADLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNIPSIPNSFYD 334 (785)
T ss_pred HHHHHHHHHhCCCceEEeecchheeccchhhhhhhccCCCccceEEeeeehHHHHHHHHHcchHHHHhcCcccccCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHcCCCCceeEEecCCcccCceeehhhHHHHHHHhhheeEeecC
Q 003852 357 SIPDSIYWPVFIVATAAAIVASQATISATFSIIKQALALGCFPRVKVVHTSKKFLGQIYIPDINWILMILCIAVTAGFKN 436 (791)
Q Consensus 357 ~~P~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~l~vv~~F~~ 436 (791)
++|+|++||+|++||+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|+++|++|||
T Consensus 335 ~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~ 414 (785)
T PLN00148 335 SIPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRD 414 (785)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHHHHHhhhh
Q 003852 437 QSQIGNAYGTAVVIVMLATTLLMTLIMILVWRCHWILVLIFTALSLVVECTYFSAVLFKVDQGGWVPLVIAAAFLVIMYV 516 (791)
Q Consensus 437 s~~l~~AYGiAV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~Kv~~GGW~pl~la~v~~~iM~~ 516 (791)
|++||||||+||++||++||||+++||+.+||||++++++|+++|+++|++|||||+.||+||||+||++|++++++|++
T Consensus 415 s~~la~AYGiAV~~vM~iTT~L~~lV~~~~W~~~~~~~~~f~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~ 494 (785)
T PLN00148 415 TTLIGNAYGLACMTVMFITTFLMALVIIFVWQKSIILAALFLLFFGFIEGVYLSAALMKVPQGGWVPLVLSAIFMSIMYI 494 (785)
T ss_pred chhHHHhhhhheeeHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHhcCCChHHHHhcCCCCCCceecceEEEEecCCCCchhhHHHHhhhCCccceEEEEEEEEEeeccccC
Q 003852 517 WHYGTVKRYEFEMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCVKYLPVYTVP 596 (791)
Q Consensus 517 W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~vf~t~~~~gvP~~~~h~l~~~~~lh~~~Vfl~i~~~~vP~V~ 596 (791)
||||++++++++.+|++|++++.++.++.++.||||+|+|||++.+|+|++|.||++|||++||++||+|||++|+|+||
T Consensus 495 W~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~RVpG~~vf~t~~~~gvP~~f~h~~~~~~~lHe~~Vfv~ik~~~vP~V~ 574 (785)
T PLN00148 495 WHYGTRKKYNFDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVS 574 (785)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHhcccCCCcccCcEEEEecCCCCCCCHHHHHHHHhCCcccceEEEEEEEECcccccC
Confidence 99999999999999999999999988888889999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEecCCCCcEEEEEEEeecccCCCChHHHHHHHHHHHHHHHHhhhhccCC------CCCCCccccccccccc-
Q 003852 597 EEERFLVKRIGPKNFHMFRCVARYGYKDLHKKDENFEKKLFDSLFLFVRLEAMMEGC------SDSDEYSLYGQQTLQS- 669 (791)
Q Consensus 597 ~~eR~~v~~~~~~~~~~yrv~~ryGy~d~~~~~~~fe~~lv~~L~~FI~~e~~~~~~------~~~~~~~~~~~~~~~~- 669 (791)
++||++++++++++|++|||++||||||.++++++||++|+++|++|||+|+...+. +++++++.++..++..
T Consensus 575 ~~eR~~v~~i~~~~yr~~r~vvryGy~d~~~~~~dFe~~Lv~~L~~FIr~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (785)
T PLN00148 575 PEERFLIGRVCPRPYRMYRCIVRYGYKDIQRDDGDFENMLVQSIAEFIQMEAEEPQSSASESSSNDGRMAVISTRDVQSS 654 (785)
T ss_pred hhheEEEEEecCCCceEEEEEEEEccCcccccchHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999889999999999999999998843211 1122333332211100
Q ss_pred cccccCC-------CC-CCCCCCc---cccccccCC-CCCcCCCccccccccCcccCCCcchHHHHHHHHHhHhCCcEEE
Q 003852 670 TDGLLNN-------NG-NSTSSNQ---DLTMSSVDS-IVPVKSPLHVNSTVMSSSQMSSHTETDELEFLNSCRDAGVVHI 737 (791)
Q Consensus 670 ~~~~~~~-------~~-~~~~~~~---~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~v~eEl~~L~~A~eaGVvYI 737 (791)
.....++ .. .+..+.. ..+..+.++ ....+++++|+..+ +.+. +++++||+++|++|+|+||+||
T Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~El~~L~~A~eaGVvYI 731 (785)
T PLN00148 655 SLLMVSEQELADIDDSIQSSKSLTLQSLQSAYEDENPGQSRRRRVRFQLPE-NPGM--DPSVREELMDLIEAKEAGVAYI 731 (785)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccceeecccc-cccc--cchHHHHHHHHHHHHHcCcEEE
Confidence 0000000 00 0000000 001111111 12345677886332 2222 6789999999999999999999
Q ss_pred eeecEEEecCCCchhHHHHHHHHHHHHHhhccCCCcccccCCCCeEeeeeEEEC
Q 003852 738 LGNTVVRASRGSKFYKKIAIDYIYAFLRKICRENSVIFNVPHESLLNVGQIFYV 791 (791)
Q Consensus 738 lG~~~vkar~~SsflKK~vIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVGMvYev 791 (791)
+||++||||++|||+||++||++|+|||||||+|.++|+|||+|||||||+|||
T Consensus 732 lG~s~v~Ar~~Ss~~KKivIn~~Y~FLRkNcR~~~~~L~IPh~~LleVGM~Y~V 785 (785)
T PLN00148 732 MGHSYVKARRSSSFLKKLAIDIGYSFLRKNCRGPAVALNIPHISLIEVGMIYYV 785 (785)
T ss_pred eccceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEcceEEEC
Confidence 999999999999999999999999999999999999999999999999999997
No 4
>PLN00149 potassium transporter; Provisional
Probab=100.00 E-value=1.2e-252 Score=2143.94 Aligned_cols=749 Identities=50% Similarity=0.879 Sum_probs=678.5
Q ss_pred cccchhHHHHHHHHHhhcceeecccccchhhhhhcccCCC---CCCcCcEehhHHHHHHHHHHhhhheeeEEEEeecCCC
Q 003852 40 YREKFSSLLLLRFAFQSLGVVYGDLGTSPLYVFYNTFPHG---IDDPEDIIGALSLIIYSLTLIPLLKYVFIVCRANDSG 116 (791)
Q Consensus 40 ~~~~~~~~~~l~La~~slGVVyGDIGTSPLYv~~~~f~~~---~~~~~~vlGvlSLIfWtLtliv~iKYv~ivLrAdn~G 116 (791)
|+++.+|+.++.|||||+|||||||||||||||+++|+++ .+++|||+|+|||||||||||+++|||+|||||||||
T Consensus 11 ~~~~~~~~~~l~La~~alGVVyGDIGTSPLYv~~~~f~~~~~~~~~~~~ilGvLSLIfWtL~Liv~iKYv~ivlrAdn~G 90 (779)
T PLN00149 11 HVKKESWRTVLTLAYQSLGVVYGDLSTSPLYVYKSTFAEDIQHSETNEEIFGVLSFVFWTLTLIPLLKYVFIVLRADDNG 90 (779)
T ss_pred ccccccHHHHHHHHHhcccEEeCcccccHHHHHHHHhcCCCCCCCCHHHhhhHHHHHHHHHHHHHhhhhEEEEEEecCCC
Confidence 4557889999999999999999999999999999999752 3899999999999999999999999999999999999
Q ss_pred CChHHHHHHhhhccccccccCCCCCCccchhhccccccc----cchhhhHHHHHhhhhhhhHHHHHHHHhHhhhhhhcCc
Q 003852 117 QGGTFALYSLLCRHAKVITIPNQHRTDEELTTYSRSTFH----EKSFAAKTKRWLEHQTFRKNALLMLVLVGTCMVIGDG 192 (791)
Q Consensus 117 EGG~fALysLl~r~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~le~~~~~~~~l~~l~l~G~~m~~gDG 192 (791)
||||||||||+|||+|++++||||++|+++++|+++.+. +.+++.++|++||||+.+|++++++|++|+||+||||
T Consensus 91 EGGtfALysLl~r~~~~~l~pn~~~~d~~ls~~~~~~~~~~~~~~~~~~~~k~~le~~~~~~~~ll~l~l~G~~m~igDg 170 (779)
T PLN00149 91 EGGTFALYSLLCRHARVNSLPNCQLADEELSEYKKDSGSSSMPLSGFGSSLKSTLEKHRVLQRFLLVLALIGTCMVIGDG 170 (779)
T ss_pred CchHHHHHHHHHHhccccCCccccchhhhhhhhhccccccccccchhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999887644 2334678999999999999999999999999999999
Q ss_pred cccchhhhhhhhccccccCCCCCCceE-ehhHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHhhhhhccccCcce
Q 003852 193 ILTPAISVLSASGGIKVDHPHMSNGVV-VLVAVVILVGLFSLQHYGTDRVGWLFAPIVLLWFLLIGGIGMLNIWKYDSSV 271 (791)
Q Consensus 193 viTPAISVLSAVeGl~v~~p~l~~~~V-v~is~~ILv~LF~iQ~~GT~kvg~~FgPIm~vWf~~i~~~GiynI~~~~P~V 271 (791)
|||||||||||||||++..|...++++ +||||+||++||++||+||+|||++|||||++||++||++|+|||++|||+|
T Consensus 171 vlTPAISVLSAVeGl~v~~~~~~~~~vvv~is~~ILv~LF~~Q~~GT~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~V 250 (779)
T PLN00149 171 VLTPAISVFSAVSGLELSMSKEHHKYVEVPVACIILIGLFALQHYGTHRVGFLFAPVVLTWLLCISAIGVYNIFHWNPHV 250 (779)
T ss_pred ccchhHHHHHHhhcccccCCCccCCceehHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHhH
Confidence 999999999999999999976545455 9999999999999999999999999999999999999999999999999999
Q ss_pred eeecChHHHHHHHHhcCcceeeeecceeeeeccccccccCCCCCCCcceehhhhHHHHHHHHhhhccchhhhccccc---
Q 003852 272 LKAFSPVYIYRYFRRGGRDGWTSLGGIMLSITGTEALFADLAHFPVSAIQIAFTVVVFPCLLLAYSGQAAYLMNHQD--- 348 (791)
Q Consensus 272 l~AlnP~ya~~f~~~~g~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~p~--- 348 (791)
|+||||+|+++||.+||++||.+||||+||+||+|||||||||||++|||+||+++|||||+|||+||||||++||+
T Consensus 251 l~AlnP~y~~~f~~~~~~~g~~~LGgV~L~iTG~EALyADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~ 330 (779)
T PLN00149 251 YQALSPYYMYKFLKKTQRGGWMSLGGILLCITGSEAMFADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIES 330 (779)
T ss_pred hhhcCHHHHHHHHHHCCCceeEeecchhhcccchhhhhhcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred cccccccccccCcchHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHcCCCCceeEEecCCcccCceeehhhHHHHHHHhh
Q 003852 349 HVVDAFYRSIPDSIYWPVFIVATAAAIVASQATISATFSIIKQALALGCFPRVKVVHTSKKFLGQIYIPDINWILMILCI 428 (791)
Q Consensus 349 ~~~npFy~~~P~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~l 428 (791)
+++||||+++|+|++||+|++||+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|+
T Consensus 331 ~~~~pFy~~iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i 410 (779)
T PLN00149 331 DYRIGFYVSVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCL 410 (779)
T ss_pred cccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHH
Confidence 56679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred heeEeecCchhhhhhhhchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHH
Q 003852 429 AVTAGFKNQSQIGNAYGTAVVIVMLATTLLMTLIMILVWRCHWILVLIFTALSLVVECTYFSAVLFKVDQGGWVPLVIAA 508 (791)
Q Consensus 429 ~vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~Kv~~GGW~pl~la~ 508 (791)
++|++||||++||||||+||++||++||||+++||+.+|+||++++++|+++|+++|++|||||+.||+||||+||++|+
T Consensus 411 ~vv~~F~~s~~l~~AYGiAV~~vM~iTT~L~~lv~~~~W~~~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~ 490 (779)
T PLN00149 411 AVTVGFRDTKRLGNASGLAVITVMLVTTCLMSLVIVLCWHKSVLLAICFIFFFGTIEALYFSASLIKFLEGAWVPIALSF 490 (779)
T ss_pred hheeEecChHHHHHHhhhhhehHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHhHHHHHHHHHhcCCChHHHHhcCCCCCCceecceEEEEecCCCCchhhHHHHhhhCCccceEEEEEEEE
Q 003852 509 AFLVIMYVWHYGTVKRYEFEMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCVK 588 (791)
Q Consensus 509 v~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~vf~t~~~~gvP~~~~h~l~~~~~lh~~~Vfl~i~ 588 (791)
+++++|++||||++++|+++.+|++|++++.++.++.++.||||+|+|||++.+|+|++|.||++|||++||++||+|||
T Consensus 491 v~~~iM~~W~~G~~~~~~~~~~~~v~~~~~~~l~~~~~~~RvpG~~vf~t~~~~gvP~~f~h~~~~~~~lhe~~Vfv~ik 570 (779)
T PLN00149 491 IFLLVMYVWHYGTLKRYEFDVQNKVSINWLLSLGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIK 570 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhccCCCCcccCcEEEEEcCCCCCCCHHHHHHHHhCCcccceEEEEEEE
Confidence 99999999999999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred EeeccccCCCceEEEEEecCCCCcEEEEEEEeecccCCCChHHHHHHHHHHHHHHHHhhhhccCC--C----CCCCcccc
Q 003852 589 YLPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKDENFEKKLFDSLFLFVRLEAMMEGC--S----DSDEYSLY 662 (791)
Q Consensus 589 ~~~vP~V~~~eR~~v~~~~~~~~~~yrv~~ryGy~d~~~~~~~fe~~lv~~L~~FI~~e~~~~~~--~----~~~~~~~~ 662 (791)
++|+|+||++|||++++++++++++|||++||||||..+++++||++|+++|++|||+|+...+. + +++++++.
T Consensus 571 ~~~vP~V~~~eR~~v~~i~~~~~~~~r~vvryGy~d~~~d~~dFE~~Lve~L~~FI~~e~~~~~~~~~~~~~~~~~~~~~ 650 (779)
T PLN00149 571 SVPVPHVRPEERFLVGRIGPKEYRLYRCIVRYGYRDVHKDDMEFEKDLVCSIAEFIRSEKPEPNGAPENEEGEDERMTVV 650 (779)
T ss_pred ECcccccChhheEEEEEecCCCceEEEEEEEEeeccccccchHHHHHHHHHHHHHHHhhhhccccccccccccccccccc
Confidence 99999999999999999999989999999999999999989999999999999999998742211 1 12233333
Q ss_pred ccccccccc-cccC-CC-CCCCCCCccccccccCCCCCcCCCccccccccCcccCCCcchHHHHHHHHHhHhCCcEEEee
Q 003852 663 GQQTLQSTD-GLLN-NN-GNSTSSNQDLTMSSVDSIVPVKSPLHVNSTVMSSSQMSSHTETDELEFLNSCRDAGVVHILG 739 (791)
Q Consensus 663 ~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~eEl~~L~~A~eaGVvYIlG 739 (791)
++.+....+ ...+ +. ...+.+....+...+.+....+++++|+... +.+. +++++||+++|++|||+||+||+|
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~v~eEl~~L~~A~eaGVvYIlG 727 (779)
T PLN00149 651 GTCSTHLEGIQLREDDSDKQEPAGTSELREIRSPPVSRPKKRVRFVVPE-SPKI--DRGAREELQELMEAREAGMAYILG 727 (779)
T ss_pred ccccccccccccccccccccccccccccccccCccccCcccceeecccc-cccc--chhHHHHHHHHHHHHHcCcEEEec
Confidence 221110000 0000 00 0000000000000011111223577876332 2223 578999999999999999999999
Q ss_pred ecEEEecCCCchhHHHHHHHHHHHHHhhccCCCcccccCCCCeEeeeeEEEC
Q 003852 740 NTVVRASRGSKFYKKIAIDYIYAFLRKICRENSVIFNVPHESLLNVGQIFYV 791 (791)
Q Consensus 740 ~~~vkar~~SsflKK~vIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVGMvYev 791 (791)
|++||||++|||+||++|||+|+|||||||+|.++|+|||+||+||||+|||
T Consensus 728 ~s~v~Ar~~Ss~~KK~vIn~~Y~FLRkNcR~~~~~L~IPh~~LleVGmvY~v 779 (779)
T PLN00149 728 HSYVRAKQGSSMMKKLVINYGYDFLRRNSRGPRYALSVPHASTLEVGMVYHV 779 (779)
T ss_pred CceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEeceEEEC
Confidence 9999999999999999999999999999999999999999999999999997
No 5
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=100.00 E-value=1.6e-230 Score=1949.80 Aligned_cols=687 Identities=43% Similarity=0.773 Sum_probs=654.3
Q ss_pred HHHhhcceeecccccchhhhhhcccCCCCCCcCcEehhHHHHHHHHHHhhhheeeEEEEeecCCCCChHHHHHHhhhccc
Q 003852 52 FAFQSLGVVYGDLGTSPLYVFYNTFPHGIDDPEDIIGALSLIIYSLTLIPLLKYVFIVCRANDSGQGGTFALYSLLCRHA 131 (791)
Q Consensus 52 La~~slGVVyGDIGTSPLYv~~~~f~~~~~~~~~vlGvlSLIfWtLtliv~iKYv~ivLrAdn~GEGG~fALysLl~r~~ 131 (791)
|++||+|||||||||||||||+++|+++.+++|||+|+||||||||||++++|||++||||||||||||||||||+||++
T Consensus 1 La~~alGvVyGDIGTSPLY~~~~~f~~~~~~~~~ilGvlSLIfWtL~livtiKYv~ivlrAdn~GEGGi~AL~sL~~r~~ 80 (688)
T TIGR00794 1 LAFQSLGVIYGDIGTSPLYVLSSTFSGGFPTERDIFGVLSLIFWLLTFIVSFKYIFIVLRADNNGEGGTFALYSLIGRYA 80 (688)
T ss_pred CcceeeeeEeCcCcCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhheeEEEEecCCCCchHHHHHHHHHHhc
Confidence 57999999999999999999999997656899999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccchhhccccccccchhhhHHHHHhhhhhhhHHHHHHHHhHhhhhhhcCccccchhhhhhhhccccccC
Q 003852 132 KVITIPNQHRTDEELTTYSRSTFHEKSFAAKTKRWLEHQTFRKNALLMLVLVGTCMVIGDGILTPAISVLSASGGIKVDH 211 (791)
Q Consensus 132 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~l~l~G~~m~~gDGviTPAISVLSAVeGl~v~~ 211 (791)
|.+.+|+|++.|+++++|+...+++.+++.++|+++|++++.|++++++|++|+||+||||+||||||||||||||+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~~~l~G~al~~gDgviTPAiSVLSAVeGl~v~~ 160 (688)
T TIGR00794 81 KISARPVHQELDRAESSYSTKSPNLLNKTTSLKTKLELSKFISKFLVIFGLLGGSMVMGDGVLTPAISVLSAVSGLEIVA 160 (688)
T ss_pred cccCCCcccchhhhhhhcccccccccchhhHHHHHhhhhHHHHHHHHHHHHHhHHHHhcccccccchhhhhhhccccccC
Confidence 99899999999999999999888777888899999999999899999999999999999999999999999999999999
Q ss_pred CCCCCceEehhHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHhhhhhccccCcceeeecChHHHHHHHHhcCcce
Q 003852 212 PHMSNGVVVLVAVVILVGLFSLQHYGTDRVGWLFAPIVLLWFLLIGGIGMLNIWKYDSSVLKAFSPVYIYRYFRRGGRDG 291 (791)
Q Consensus 212 p~l~~~~Vv~is~~ILv~LF~iQ~~GT~kvg~~FgPIm~vWf~~i~~~GiynI~~~~P~Vl~AlnP~ya~~f~~~~g~~g 291 (791)
|++++++|+||||+||++||++||+||+|||++|||||++||++||++|+|||++|||+||+|+||+||++||.+||+.|
T Consensus 161 p~~~~~~Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~ 240 (688)
T TIGR00794 161 PSLSDTWVVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVG 240 (688)
T ss_pred CCCCCCeehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCce
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecceeeeeccccccccCCCCCCCcceehhhhHHHHHHHHhhhccchhhhccccccccccccccccCcchHHHHHHHH
Q 003852 292 WTSLGGIMLSITGTEALFADLAHFPVSAIQIAFTVVVFPCLLLAYSGQAAYLMNHQDHVVDAFYRSIPDSIYWPVFIVAT 371 (791)
Q Consensus 292 ~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFy~~~P~~~~~P~~vlAt 371 (791)
|.+||+|+||+||+||||||||||||+|||+||+++|||||+|||+||||||++||++.+||||+++|+|++||++++||
T Consensus 241 ~~~LG~V~L~iTGaEALyADmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p~~~~NpFf~~~P~~~~~p~~vlAt 320 (688)
T TIGR00794 241 WVSLGGVVLSITGVEAMFADLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHPEAIKNPFFLSIPDWALWPLFIIAT 320 (688)
T ss_pred eeeccchhheeccHhhhhcccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCcchhcCcHHHhCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHcCCCCceeEEecCCcccCceeehhhHHHHHHHhhheeEeecCchhhhhhhhchhhHH
Q 003852 372 AAAIVASQATISATFSIIKQALALGCFPRVKVVHTSKKFLGQIYIPDINWILMILCIAVTAGFKNQSQIGNAYGTAVVIV 451 (791)
Q Consensus 372 lAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~l~vv~~F~~s~~l~~AYGiAV~~~ 451 (791)
+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|+++|++||||++||+|||+||++|
T Consensus 321 lAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYGiaVt~t 400 (688)
T TIGR00794 321 LAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYGIAVTGT 400 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHHHHHhhhhhhHhHHHHHHHHHhc
Q 003852 452 MLATTLLMTLIMILVWRCHWILVLIFTALSLVVECTYFSAVLFKVDQGGWVPLVIAAAFLVIMYVWHYGTVKRYEFEMHS 531 (791)
Q Consensus 452 M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~Kv~~GGW~pl~la~v~~~iM~~W~~G~~~~~~~~~~~ 531 (791)
|+|||+|++++|+.+|+||++++++|+++|+.+|++|||||+.|++||||+||++|++++++|++|+|||+++++++.++
T Consensus 401 M~iTT~L~~~v~~~~w~~~~~~~~~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~~~ 480 (688)
T TIGR00794 401 FLVTTCLMTVVMTIVWKWNIYFVALFLLVFLSVELIYFSSNLDKVPEGGWFPLSLSGIFMSVMTTWRYGRFRKLRRDHEH 480 (688)
T ss_pred hHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHhcCC-CCCCceecceEEEEecCCCCchhhHHHHhhhCCccceEEEEEEEEEeeccccCCCceEEEEEecCCC
Q 003852 532 KVSMAWILGLGP-SLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERFLVKRIGPKN 610 (791)
Q Consensus 532 ~~~~~~~~~~~~-~~~~~rvpG~~vf~t~~~~gvP~~~~h~l~~~~~lh~~~Vfl~i~~~~vP~V~~~eR~~v~~~~~~~ 610 (791)
++|+++|++.+. +.+.+|+||+|+|||++++++|++|.||++|||++||++||+||+++|+|+||++||++++++++++
T Consensus 481 ~~~~~~~~~~l~~~~~l~rvpG~avf~t~~~~~vP~~~~h~l~~~~~lhe~~vfltv~~~~~P~Vp~~eR~~v~~l~~~~ 560 (688)
T TIGR00794 481 RVSISALIASLQPKPGLVRVPGIGIYYSNLVNGIPAVFGHLVTKFPSIHEVFIFLSLRTLDAPTVHNEERVQISQVGPTE 560 (688)
T ss_pred CCCHHHHHHHHhhcCCCcccCCeEEEeeCCccCCCHHHHHHHHhCCccceEEEEEEEEECCCCcCCcceEEEEEEEcCCC
Confidence 999999988554 3445899999999999999999999999999999999999999999999999999999999999754
Q ss_pred CcEEEEEEEeecccCCCChHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccccccccccccccCCCCCCCCCCcccccc
Q 003852 611 FHMFRCVARYGYKDLHKKDENFEKKLFDSLFLFVRLEAMMEGCSDSDEYSLYGQQTLQSTDGLLNNNGNSTSSNQDLTMS 690 (791)
Q Consensus 611 ~~~yrv~~ryGy~d~~~~~~~fe~~lv~~L~~FI~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (791)
|+|||++||||||+||+|++|+++++++|++||+++......+ . + .. .
T Consensus 561 -g~~rv~~~yGf~e~~~~~~~l~~~ii~~L~~fi~~~~~~~~~~---------~---~----------------~~---~ 608 (688)
T TIGR00794 561 -GMYRCVIRYGFMDTPNEPKELAAHIVNSIVEFVEHECGFNLNN---------L---E----------------EL---S 608 (688)
T ss_pred -CEEEEEEEecCCcCCCcHHHHHHHHHHHHHHHHHHHhhhcccc---------c---c----------------cc---c
Confidence 8999999999999999999999999999999999865210000 0 0 00 0
Q ss_pred ccCCCCCcCCCccccccccCcccCCCcchHHHHHHHHHhHhCCcEEEeeecEEEecCCCchhHHHHHHHHHHHHHhhccC
Q 003852 691 SVDSIVPVKSPLHVNSTVMSSSQMSSHTETDELEFLNSCRDAGVVHILGNTVVRASRGSKFYKKIAIDYIYAFLRKICRE 770 (791)
Q Consensus 691 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~eEl~~L~~A~eaGVvYIlG~~~vkar~~SsflKK~vIn~~Y~FLRkNcR~ 770 (791)
++ +. +.+.+||++++++++|+|++|++||++++++++|+++||+.||++|.|||||||+
T Consensus 609 -~~----------------~~----~~~~eee~~~~~~~~~~gv~yflg~~~~~~~~~~~~~~~~~I~~lf~~l~rn~~~ 667 (688)
T TIGR00794 609 -DK----------------RC----RMPIEEIFENAMETKEHGYSYFMGEESLILKKRSPILRKIRVNHVFLFIRRNARR 667 (688)
T ss_pred -cc----------------cc----ccchHHHHHHHHHHhhcCCEEEeeceEEEECCCccHHHHHHHHHHHHHHHHhccC
Confidence 00 00 1235789999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCeEeeeeEEEC
Q 003852 771 NSVIFNVPHESLLNVGQIFYV 791 (791)
Q Consensus 771 ~~~~L~IPh~~LlEVGMvYev 791 (791)
+...++|||+|++||||.||+
T Consensus 668 ~~~~~~iP~~rvvevG~~~~i 688 (688)
T TIGR00794 668 APKVLEIPPDRLLEVGTVVEI 688 (688)
T ss_pred hhhheeCChhhEEEEeeEEEC
Confidence 999999999999999999996
No 6
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=100.00 E-value=9.8e-208 Score=1739.62 Aligned_cols=606 Identities=30% Similarity=0.554 Sum_probs=575.1
Q ss_pred HHHHhhcceeecccccchhhhhhcccCCC--C-CCcCcEehhHHHHHHHHHHhhhheeeEEEEeecCCCCChHHHHHHhh
Q 003852 51 RFAFQSLGVVYGDLGTSPLYVFYNTFPHG--I-DDPEDIIGALSLIIYSLTLIPLLKYVFIVCRANDSGQGGTFALYSLL 127 (791)
Q Consensus 51 ~La~~slGVVyGDIGTSPLYv~~~~f~~~--~-~~~~~vlGvlSLIfWtLtliv~iKYv~ivLrAdn~GEGG~fALysLl 127 (791)
.++++|+|||||||||||||+|+++|+++ . +++|||+|++||||||||+++++|||+++|||||||||||||||||+
T Consensus 11 ~l~l~aLGVVyGDIGTSPLY~~~~~f~~~~~~~~~~~~vlGvlSLIfWtL~livtiKYv~ivlrADn~GEGGi~AL~aL~ 90 (622)
T PRK10745 11 AITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLILVVSIKYLTFVMRADNAGEGGILTLMSLA 90 (622)
T ss_pred HHHHhhcceEecCCCCChHHHHHHHhccCCCCCCChhHeehhhHHHHHHHHHHHHHHhheEEEecCCCCCchHHHHHHHH
Confidence 38899999999999999999999999762 2 89999999999999999999999999999999999999999999999
Q ss_pred hccccccccCCCCCCccchhhccccccccchhhhHHHHHhhhhhhhHHHHHHHHhHhhhhhhcCccccchhhhhhhhccc
Q 003852 128 CRHAKVITIPNQHRTDEELTTYSRSTFHEKSFAAKTKRWLEHQTFRKNALLMLVLVGTCMVIGDGILTPAISVLSASGGI 207 (791)
Q Consensus 128 ~r~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~l~l~G~~m~~gDGviTPAISVLSAVeGl 207 (791)
+|+.+ ++.|.+++++|++|+||+||||+||||||||||||||
T Consensus 91 ~~~~~--------------------------------------~~~~~~l~~lgl~Gaal~~gDgvITPAISVLSAVEGL 132 (622)
T PRK10745 91 GRNTS--------------------------------------ARTTSMLVIMGLIGGSFFYGEVVITPAISVMSAIEGL 132 (622)
T ss_pred hhhcc--------------------------------------cchhHHHHHHHHHHHHHHhhccccchhHHHHHHhhcc
Confidence 77543 1245578999999999999999999999999999999
Q ss_pred cccCCCCCCceEehhHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHhhhhhccccCcceeeecChHHHHHHHHhc
Q 003852 208 KVDHPHMSNGVVVLVAVVILVGLFSLQHYGTDRVGWLFAPIVLLWFLLIGGIGMLNIWKYDSSVLKAFSPVYIYRYFRRG 287 (791)
Q Consensus 208 ~v~~p~l~~~~Vv~is~~ILv~LF~iQ~~GT~kvg~~FgPIm~vWf~~i~~~GiynI~~~~P~Vl~AlnP~ya~~f~~~~ 287 (791)
|+..|+++ ++|+||||+||++||++||+||+|||++|||||++||++||++|+|||.+ ||+||+|+||+|+++||.+|
T Consensus 133 ~v~~p~l~-~~Vvpit~~ILv~LF~iQ~~GT~~vG~~FgPIm~vWF~~i~~~Gi~~I~~-~P~Vl~AlnP~ya~~f~~~~ 210 (622)
T PRK10745 133 EIVAPQLD-TYIVPLSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFLTLAVLGLRSIIA-NPEVLHALNPMWAVHFFLEY 210 (622)
T ss_pred cccCCCCC-CccHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHhc-CHHHHhHhCHHHHHHHHHhC
Confidence 99999995 59999999999999999999999999999999999999999999999998 89999999999999999999
Q ss_pred CcceeeeecceeeeeccccccccCCCCCCCcceehhhhHHHHHHHHhhhccchhhhccccccccccccccccCcchHHHH
Q 003852 288 GRDGWTSLGGIMLSITGTEALFADLAHFPVSAIQIAFTVVVFPCLLLAYSGQAAYLMNHQDHVVDAFYRSIPDSIYWPVF 367 (791)
Q Consensus 288 g~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFy~~~P~~~~~P~~ 367 (791)
|..||.+||+|+||+||+||||||||||||+|||+||+++|||||+|||+||||+|++||++.+||||+++|+|++||++
T Consensus 211 ~~~gf~~LG~V~L~vTGaEALYADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p~~~~NpFf~~~P~~~~~p~v 290 (622)
T PRK10745 211 KTVSFFALGAVVLAITGVEALYADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNPEAIKNPFFLLAPDWALIPLL 290 (622)
T ss_pred CCceEEEecceeeeccchHHHhhccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCchhhcCcHHHhCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHcCCCCceeEEecCCcccCceeehhhHHHHHHHhhheeEeecCchhhhhhhhch
Q 003852 368 IVATAAAIVASQATISATFSIIKQALALGCFPRVKVVHTSKKFLGQIYIPDINWILMILCIAVTAGFKNQSQIGNAYGTA 447 (791)
Q Consensus 368 vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~l~vv~~F~~s~~l~~AYGiA 447 (791)
++||+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|++++++||||++||+|||+|
T Consensus 291 iLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGiA 370 (622)
T PRK10745 291 ILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGIA 370 (622)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHHHHHhhhhhhHhHHHHHHH
Q 003852 448 VVIVMLATTLLMTLIMILVWRCHWILVLIFTALSLVVECTYFSAVLFKVDQGGWVPLVIAAAFLVIMYVWHYGTVKRYEF 527 (791)
Q Consensus 448 V~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~Kv~~GGW~pl~la~v~~~iM~~W~~G~~~~~~~ 527 (791)
|++||++||+|++++++.+|+|+++++++++++|+++|++||+||+.|++||||+|+++|++++++|+||++||++++++
T Consensus 371 Vt~tM~iTT~L~~~v~~~~w~~~~~~~~~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~v~~~iM~tW~~G~~~~~~~ 450 (622)
T PRK10745 371 VTGTMVLTSILSTTVARKNWHWNKYFVALILIAFLCIDIPLFSANLDKLLSGGWLPLSLGLVMFIVMTTWKSERFRLLRR 450 (622)
T ss_pred heeHhHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHhcCCCCCCceecceEEEEecCCCCchhhHHHHhhhCCccceEEEEEEEEEeeccccCCCceEEEEEec
Q 003852 528 EMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERFLVKRIG 607 (791)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~rvpG~~vf~t~~~~gvP~~~~h~l~~~~~lh~~~Vfl~i~~~~vP~V~~~eR~~v~~~~ 607 (791)
+.++++|+++|++.+++.++.||||+|+|||+..+++|+++.||+||||++||++||+||+++|+|+||++||+++++++
T Consensus 451 ~~~~~~~l~~f~~~l~~~~~~rvpG~avflt~~~~~vP~~l~h~lk~~~~lhe~~v~l~v~~~~~P~V~~~eR~~v~~l~ 530 (622)
T PRK10745 451 MHEHGNSLEAMIASLEKSPPVRVPGTAVYMSRAINVIPFALLHNLKHNKVLHERVILLTLRTEDAPYVHNVRRVQIEQLS 530 (622)
T ss_pred HHhcCCCHHHHHHHhhhcCCCccCeEEEEEeCCCCCCCHHHHHHhhcCCccceEEEEEEEEECCCcccCcccEEEEEEEC
Confidence 99999999999999888787899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeecccCCCChHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccccccccccccccCCCCCCCCCCccc
Q 003852 608 PKNFHMFRCVARYGYKDLHKKDENFEKKLFDSLFLFVRLEAMMEGCSDSDEYSLYGQQTLQSTDGLLNNNGNSTSSNQDL 687 (791)
Q Consensus 608 ~~~~~~yrv~~ryGy~d~~~~~~~fe~~lv~~L~~FI~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (791)
+ |+|||++||||||+||+|+.+++. +.+.
T Consensus 531 ~---g~~rv~~~yGf~e~~~i~~~L~~~---------~~~g--------------------------------------- 559 (622)
T PRK10745 531 P---TFWRVVASYGWRETPNVEEVFHRC---------GLEG--------------------------------------- 559 (622)
T ss_pred C---CEEEEEEEecCCCCCCHHHHHHHH---------HhCC---------------------------------------
Confidence 7 799999999999999998776431 0000
Q ss_pred cccccCCCCCcCCCccccccccCcccCCCcchHHHHHHHHHhHhCCcEEEeeecEEEecCCCc---hhHHHHHHHHHHHH
Q 003852 688 TMSSVDSIVPVKSPLHVNSTVMSSSQMSSHTETDELEFLNSCRDAGVVHILGNTVVRASRGSK---FYKKIAIDYIYAFL 764 (791)
Q Consensus 688 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~eEl~~L~~A~eaGVvYIlG~~~vkar~~Ss---flKK~vIn~~Y~FL 764 (791)
.+++ . ..++|.+||+.++..++++ |-|| +|.||
T Consensus 560 --------------~~~~--~-----------------------~~~s~fl~r~~l~~~~~~~m~~wr~~-----lF~~m 595 (622)
T PRK10745 560 --------------LSCR--M-----------------------METSFFMSHESLILGKRPWYLRLRGK-----LFLLL 595 (622)
T ss_pred --------------CCCC--c-----------------------cceEEEEeeEEEEeCCCCCcHHHHHH-----HHHHH
Confidence 0000 0 1579999999999888887 6555 68999
Q ss_pred HhhccCCCcccccCCCCeEeeeeEEEC
Q 003852 765 RKICRENSVIFNVPHESLLNVGQIFYV 791 (791)
Q Consensus 765 RkNcR~~~~~L~IPh~~LlEVGMvYev 791 (791)
.||+++....+++|++|++|+|+.+|+
T Consensus 596 ~rna~~~~~~f~lP~~rvvelG~~v~i 622 (622)
T PRK10745 596 QRNALRAPDQFEIPPNRVIELGTQVEI 622 (622)
T ss_pred HHcCCCHHHHhCCCcccEEEEeeEEeC
Confidence 999999999999999999999999985
No 7
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=100.00 E-value=4.1e-198 Score=1649.75 Aligned_cols=532 Identities=47% Similarity=0.820 Sum_probs=519.2
Q ss_pred HHhhcceeecccccchhhhhhcccC--CCCCCcCcEehhHHHHHHHHHHhhhheeeEEEEeecCCCCChHHHHHHhhhcc
Q 003852 53 AFQSLGVVYGDLGTSPLYVFYNTFP--HGIDDPEDIIGALSLIIYSLTLIPLLKYVFIVCRANDSGQGGTFALYSLLCRH 130 (791)
Q Consensus 53 a~~slGVVyGDIGTSPLYv~~~~f~--~~~~~~~~vlGvlSLIfWtLtliv~iKYv~ivLrAdn~GEGG~fALysLl~r~ 130 (791)
|++|+|||||||||||||+|+++|. +..+++|||+|+||||||||||++++|||+++|||||||||||||||||+||.
T Consensus 1 a~~alGVVyGDIGTSPLY~~~~~f~~~~~~~~~~~vlG~lSlIfWtL~liv~iKYv~ivlradn~GEGGi~aL~sL~~~~ 80 (534)
T PF02705_consen 1 ALGALGVVYGDIGTSPLYVFKEIFGSHGLPPTEENVLGVLSLIFWTLTLIVTIKYVLIVLRADNNGEGGIFALYSLIRRF 80 (534)
T ss_pred CceeEEEEeCCCCCCHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHHHHHheEEEEEEeCCCCChhHHHHHHHHHHh
Confidence 6899999999999999999999993 24599999999999999999999999999999999999999999999999853
Q ss_pred ccccccCCCCCCccchhhccccccccchhhhHHHHHhhhhhhhHHHHHHHHhHhhhhhhcCccccchhhhhhhhcccccc
Q 003852 131 AKVITIPNQHRTDEELTTYSRSTFHEKSFAAKTKRWLEHQTFRKNALLMLVLVGTCMVIGDGILTPAISVLSASGGIKVD 210 (791)
Q Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~l~l~G~~m~~gDGviTPAISVLSAVeGl~v~ 210 (791)
.+ ++++.|..++++|++|+||+||||+||||||||||||||++.
T Consensus 81 ~~------------------------------------~~~~~~~~l~~l~l~G~al~~gDgviTPAISVlSAvEGl~v~ 124 (534)
T PF02705_consen 81 LK------------------------------------SSKRRRWLLLILGLLGAALFYGDGVITPAISVLSAVEGLEVA 124 (534)
T ss_pred hc------------------------------------cchhHHHHHHHHHHHHhhhhhcceeecchHHHHHHhhhhhcc
Confidence 32 345677778999999999999999999999999999999999
Q ss_pred CCCCCCceEehhHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHhhhhhccccCcceeeecChHHHHHHHHhcCcc
Q 003852 211 HPHMSNGVVVLVAVVILVGLFSLQHYGTDRVGWLFAPIVLLWFLLIGGIGMLNIWKYDSSVLKAFSPVYIYRYFRRGGRD 290 (791)
Q Consensus 211 ~p~l~~~~Vv~is~~ILv~LF~iQ~~GT~kvg~~FgPIm~vWf~~i~~~GiynI~~~~P~Vl~AlnP~ya~~f~~~~g~~ 290 (791)
.|+++ ++|+|+||+||++||++||+||+|||++|||||++||++||++|+|||.+| |+||+|+||+|+++||.+||+.
T Consensus 125 ~p~~~-~~Vv~it~~ILv~LF~iQ~~GT~~ig~~FgPim~~WF~~l~~~G~~~I~~~-p~Vl~A~nP~yai~f~~~~~~~ 202 (534)
T PF02705_consen 125 TPSLE-PYVVPITIAILVGLFAIQRFGTAKIGKLFGPIMLLWFLTLGVLGLYNIIQH-PEVLKALNPYYAIRFFIRNGWI 202 (534)
T ss_pred CCCCc-ceehhHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhC-HHHHHHhCHHHHHHHHHHcCCc
Confidence 99997 699999999999999999999999999999999999999999999999995 9999999999999999999999
Q ss_pred eeeeecceeeeeccccccccCCCCCCCcceehhhhHHHHHHHHhhhccchhhhccccccccccccccccCcchHHHHHHH
Q 003852 291 GWTSLGGIMLSITGTEALFADLAHFPVSAIQIAFTVVVFPCLLLAYSGQAAYLMNHQDHVVDAFYRSIPDSIYWPVFIVA 370 (791)
Q Consensus 291 g~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFy~~~P~~~~~P~~vlA 370 (791)
||.+||+|+||+||+||||||||||||+|||+||+++|||||+|||+||||+|++||++.+||||+++|+|++||++++|
T Consensus 203 ~~~~LG~V~L~~TGaEALyADmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~~~~npFf~~~P~~~~~p~~ilA 282 (534)
T PF02705_consen 203 GFFVLGAVFLCVTGAEALYADMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPEAVSNPFFLLIPEWLLWPMVILA 282 (534)
T ss_pred hhhhcchHHHHHhhHHHHHhhhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcchhhhHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHcCCCCceeEEecCCcccCceeehhhHHHHHHHhhheeEeecCchhhhhhhhchhhH
Q 003852 371 TAAAIVASQATISATFSIIKQALALGCFPRVKVVHTSKKFLGQIYIPDINWILMILCIAVTAGFKNQSQIGNAYGTAVVI 450 (791)
Q Consensus 371 tlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~l~vv~~F~~s~~l~~AYGiAV~~ 450 (791)
|+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|++++++||||++||+|||+||++
T Consensus 283 tlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGiAVt~ 362 (534)
T PF02705_consen 283 TLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGIAVTG 362 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHHHHHhhhhhhHhHHHHHHHHHh
Q 003852 451 VMLATTLLMTLIMILVWRCHWILVLIFTALSLVVECTYFSAVLFKVDQGGWVPLVIAAAFLVIMYVWHYGTVKRYEFEMH 530 (791)
Q Consensus 451 ~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~Kv~~GGW~pl~la~v~~~iM~~W~~G~~~~~~~~~~ 530 (791)
||++||+|++++++.+||||.+++++|+++|+.+|+.||+||+.|++||||+|+++|++++++|++|+|||+++++++++
T Consensus 363 tM~iTT~L~~~v~~~~w~~~~~~~~~~~~~fl~id~~ff~anl~K~~~GGW~pl~ia~~l~~iM~tW~~G~~~~~~~~~~ 442 (534)
T PF02705_consen 363 TMLITTILLFLVMRRVWKWPLWLALLFFLFFLVIDLLFFSANLLKFPHGGWFPLLIAAVLFTIMYTWRRGRKLLYEFERE 442 (534)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHhcCCCCCCceecceEEEEecCCCCchhhHHHHhhhCCccceEEEEEEEEEeeccccCCCceEEEEEecCCC
Q 003852 531 SKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERFLVKRIGPKN 610 (791)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~rvpG~~vf~t~~~~gvP~~~~h~l~~~~~lh~~~Vfl~i~~~~vP~V~~~eR~~v~~~~~~~ 610 (791)
+++++++++++.++.++.|+||+|+|+|+..+++|+++.||++||+++||+++|+|++++|+|+||++||++++++++
T Consensus 443 ~~~~~~~~~~~~~~~~~~rvpG~aVFlt~~~~~vP~~l~h~l~~~~vlhe~~v~l~v~~~~vP~V~~~~R~~v~~l~~-- 520 (534)
T PF02705_consen 443 NKLPLDDFLELLEDQSIPRVPGTAVFLTRSPDGVPPALLHNLKHNKVLHERVVFLTVKTEPVPRVPPEERYEVERLGP-- 520 (534)
T ss_pred cCCCHHHHHHhhhhCCCceecceEEEEcCCCccCcHHHHHHHHhCCcccceEEEEEEEEeccCCCCCceEEEEEEecC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CcEEEEEEEeeccc
Q 003852 611 FHMFRCVARYGYKD 624 (791)
Q Consensus 611 ~~~yrv~~ryGy~d 624 (791)
+|+|||++||||||
T Consensus 521 ~g~~rv~~ryGf~e 534 (534)
T PF02705_consen 521 DGFYRVTLRYGFME 534 (534)
T ss_pred CCEEEEEEEecCCC
Confidence 38999999999998
No 8
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-192 Score=1578.18 Aligned_cols=609 Identities=35% Similarity=0.627 Sum_probs=578.9
Q ss_pred HHHHHHhhcceeecccccchhhhhhcccCC--CC-CCcCcEehhHHHHHHHHHHhhhheeeEEEEeecCCCCChHHHHHH
Q 003852 49 LLRFAFQSLGVVYGDLGTSPLYVFYNTFPH--GI-DDPEDIIGALSLIIYSLTLIPLLKYVFIVCRANDSGQGGTFALYS 125 (791)
Q Consensus 49 ~l~La~~slGVVyGDIGTSPLYv~~~~f~~--~~-~~~~~vlGvlSLIfWtLtliv~iKYv~ivLrAdn~GEGG~fALys 125 (791)
+..++++|+|||||||||||||+++++|.. +. .++++|+|++||||||||+|||+|||+++|||||||||||++|++
T Consensus 15 ~~~l~lgAiGVVyGDIGTSPLYa~~e~~~~~~~~~v~~~~VlGvlSLi~WtLtlIVTiKYv~~vlRADN~GEGGilsL~a 94 (627)
T COG3158 15 TKALTLGAIGVVYGDIGTSPLYALREALSGQGGLGVSRDEVLGVLSLIIWTLTLIVTIKYVLFVLRADNNGEGGILSLMA 94 (627)
T ss_pred chhHhhheeeeEeccCCCChHHHHHHHhccCCCCCCCcceeeeHHHHHHHHHHHHHHHhhheeEEecCCCCCchhhhHHH
Confidence 457899999999999999999999999986 33 789999999999999999999999999999999999999999999
Q ss_pred hhhccccccccCCCCCCccchhhccccccccchhhhHHHHHhhhhhhhHHHHHHHHhHhhhhhhcCccccchhhhhhhhc
Q 003852 126 LLCRHAKVITIPNQHRTDEELTTYSRSTFHEKSFAAKTKRWLEHQTFRKNALLMLVLVGTCMVIGDGILTPAISVLSASG 205 (791)
Q Consensus 126 Ll~r~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~l~l~G~~m~~gDGviTPAISVLSAVe 205 (791)
|++|.++ +...++.++|++|+|+|+|||+||||||||||||
T Consensus 95 L~~~~~~---------------------------------------~~~~~l~~~g~iGaalf~GD~vITPAiSVlSAvE 135 (627)
T COG3158 95 LARRAAP---------------------------------------RRTALLIILGLIGAALFYGDAVITPAISVLSAVE 135 (627)
T ss_pred HHHhhcC---------------------------------------CCchhhhhHHHHhHHHHhcccccchhHHHHHHhc
Confidence 9988765 1455899999999999999999999999999999
Q ss_pred cccccCCCCCCceEehhHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHhhhhhccccCcceeeecChHHHHHHHH
Q 003852 206 GIKVDHPHMSNGVVVLVAVVILVGLFSLQHYGTDRVGWLFAPIVLLWFLLIGGIGMLNIWKYDSSVLKAFSPVYIYRYFR 285 (791)
Q Consensus 206 Gl~v~~p~l~~~~Vv~is~~ILv~LF~iQ~~GT~kvg~~FgPIm~vWf~~i~~~GiynI~~~~P~Vl~AlnP~ya~~f~~ 285 (791)
||+++.|.++ ++|+|||.+||++||++||+||++||++|||||++||+++|..|++||.+ ||+||+|+|||||++|+.
T Consensus 136 GL~iv~p~~~-~~Vvpitl~IL~~LF~iQ~~GT~~Vg~~FGPVm~lWF~~l~~~Gl~~i~~-~p~IL~AiNP~yAi~fl~ 213 (627)
T COG3158 136 GLEIVTPALD-PYVVPITLIILVLLFLIQRFGTGRVGKLFGPVMLLWFLALAVLGLINIID-DPEILRAINPYYAVHFLL 213 (627)
T ss_pred cccccCcccc-CccHHHHHHHHHHHHHHhcccchhhhhhhccHHHHHHHHHHHHHHHHHhc-CHHHHHHhChHHHHHHHH
Confidence 9999999996 69999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred hcCcceeeeecceeeeeccccccccCCCCCCCcceehhhhHHHHHHHHhhhccchhhhccccccccccccccccCcchHH
Q 003852 286 RGGRDGWTSLGGIMLSITGTEALFADLAHFPVSAIQIAFTVVVFPCLLLAYSGQAAYLMNHQDHVVDAFYRSIPDSIYWP 365 (791)
Q Consensus 286 ~~g~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFy~~~P~~~~~P 365 (791)
++|..||+.||+||||+||+||||||||||||+|||.||+++|+|||+|||+||||++++||++..||||.++|+|++||
T Consensus 214 ~~~~~gf~vLGaVfLavTGaEALYADmGHfGr~pI~~AWf~vv~P~L~LNY~GQGA~vL~~p~a~~npFF~~~P~~aliP 293 (627)
T COG3158 214 EEGFVGFFVLGAVFLAVTGAEALYADMGHFGRKPIRVAWFFVVLPCLLLNYFGQGALLLSNPEAIGNPFFLLAPDWALIP 293 (627)
T ss_pred hCCceEEEEeeeeeeeeccHHHHHhhccccCCccHHHHHHHHHHHHHHHHHccccceeccCcccccCcHHHhChhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHcCCCCceeEEecCCcccCceeehhhHHHHHHHhhheeEeecCchhhhhhhh
Q 003852 366 VFIVATAAAIVASQATISATFSIIKQALALGCFPRVKVVHTSKKFLGQIYIPDINWILMILCIAVTAGFKNQSQIGNAYG 445 (791)
Q Consensus 366 ~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~l~vv~~F~~s~~l~~AYG 445 (791)
+++|||+||||||||+|||+||++|||++||++|||||.|||+++.||||||.|||+|+++++.++++||+|++||+|||
T Consensus 294 ~viLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYG 373 (627)
T COG3158 294 LVILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYG 373 (627)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHHHHHhhhhhhHhHHHHH
Q 003852 446 TAVVIVMLATTLLMTLIMILVWRCHWILVLIFTALSLVVECTYFSAVLFKVDQGGWVPLVIAAAFLVIMYVWHYGTVKRY 525 (791)
Q Consensus 446 iAV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~Kv~~GGW~pl~la~v~~~iM~~W~~G~~~~~ 525 (791)
+|||++|+|||+|++++++..|||+.+.+.++.++|+++|..||+||+.|++||||+|+++|++++++|+||++|+++.+
T Consensus 374 iAVTgtM~iTt~L~~~~~~~~w~w~~~~~~~~~~~f~~id~~Ff~AN~~Ki~~GGw~pllia~~i~~vM~tW~~g~~~l~ 453 (627)
T COG3158 374 IAVTGTMVITTILLTVVMRKKWKWRKWLVALILIVFLAIDILFFAANLLKIHDGGWLPLLLAAVIFFVMWTWKRGRQILF 453 (627)
T ss_pred hheeehhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHhcCCCCCCceecceEEEEecCCCCchhhHHHHhhhCCccceEEEEEEEEEeeccccCCCceEEEEE
Q 003852 526 EFEMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERFLVKR 605 (791)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~rvpG~~vf~t~~~~gvP~~~~h~l~~~~~lh~~~Vfl~i~~~~vP~V~~~eR~~v~~ 605 (791)
++..++++|+|.+++.+++.++.|||||++|+|+..+.+|.+++||+|||+++||++||+|+++.++|+|+++||+.+++
T Consensus 454 ~~~~~~~i~l~~fi~~l~~~~p~~v~gTAVfLt~~~~~vP~aLlhnlkhnkvlhe~nv~ltv~t~~~P~v~~~~r~~ve~ 533 (627)
T COG3158 454 EKTRENGIPLDAFIASLEKHPPVRVPGTAVFLTRDPDVVPRALLHNLKHNKVLHERNVFLTVRTEDVPYVHPTDRVKVEQ 533 (627)
T ss_pred HHhhcCCCCHHHHHHHHhhCCCcccCceEEEEcCCCCcCcHHHHHHhhhhheeeeeEEEEEEEecCCCCCCccceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEEEeecccCCCChHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccccccccccccccCCCCCCCCCCc
Q 003852 606 IGPKNFHMFRCVARYGYKDLHKKDENFEKKLFDSLFLFVRLEAMMEGCSDSDEYSLYGQQTLQSTDGLLNNNGNSTSSNQ 685 (791)
Q Consensus 606 ~~~~~~~~yrv~~ryGy~d~~~~~~~fe~~lv~~L~~FI~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (791)
+++ +++|++++|||||+||+|+.+..- +.
T Consensus 534 l~~---~f~rV~l~~Gfme~pnvp~~l~~~---------~~--------------------------------------- 562 (627)
T COG3158 534 LSD---DFVRVVLHFGFMETPNVPRALRLC---------RK--------------------------------------- 562 (627)
T ss_pred ccC---ceEEEEEEeeccCCCCHHHHHHHH---------hh---------------------------------------
Confidence 998 799999999999999998766431 10
Q ss_pred cccccccCCCCCcCCCccccccccCcccCCCcchHHHHHHHHHhHhCCcEEEeeecEEEecCCCchhHHHHHHHHHHHHH
Q 003852 686 DLTMSSVDSIVPVKSPLHVNSTVMSSSQMSSHTETDELEFLNSCRDAGVVHILGNTVVRASRGSKFYKKIAIDYIYAFLR 765 (791)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~eEl~~L~~A~eaGVvYIlG~~~vkar~~SsflKK~vIn~~Y~FLR 765 (791)
++.+|+ .+ ...|.+|++.++++++|++.+ +-- -.|.+|.
T Consensus 563 --------------~G~~f~--im-----------------------~tsFfl~re~l~~~~~~g~~~-w~~-~lfi~l~ 601 (627)
T COG3158 563 --------------KGLKFD--IM-----------------------ETSFFLSRESLIASKNSGMPR-WRD-RLFIALA 601 (627)
T ss_pred --------------cCceec--cc-----------------------ceEEEEEeeeeecCCCCCchH-HHH-HHHHHHH
Confidence 011121 10 357999999999999999876 333 4789999
Q ss_pred hhccCCCcccccCCCCeEeeeeEEE
Q 003852 766 KICRENSVIFNVPHESLLNVGQIFY 790 (791)
Q Consensus 766 kNcR~~~~~L~IPh~~LlEVGMvYe 790 (791)
||.-++...++||.+|++|+|---|
T Consensus 602 r~aa~~~~~F~lp~~rvvElGtqve 626 (627)
T COG3158 602 RNAASPTDYFKLPPNRVVELGTQVE 626 (627)
T ss_pred HhcCCHHHhhCCCCCcEEEeeeeee
Confidence 9999999999999999999996544
No 9
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=91.30 E-value=0.56 Score=54.09 Aligned_cols=87 Identities=20% Similarity=0.169 Sum_probs=43.3
Q ss_pred EehhHHHHHHHHHhhhccccccccc---chhhHHHHHHHHHHHhhhhhccccCcceeeecChHHHHHHHHhcCcceee-e
Q 003852 219 VVLVAVVILVGLFSLQHYGTDRVGW---LFAPIVLLWFLLIGGIGMLNIWKYDSSVLKAFSPVYIYRYFRRGGRDGWT-S 294 (791)
Q Consensus 219 Vv~is~~ILv~LF~iQ~~GT~kvg~---~FgPIm~vWf~~i~~~GiynI~~~~P~Vl~AlnP~ya~~f~~~~g~~g~~-~ 294 (791)
...+++++++++..+.-+|....++ .+.-+.++=++.+.+.|++.+.+.+++ ..+|...+.-. .++..+|. .
T Consensus 165 ~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~---~~~~~~~f~~~-~~~~~~~~~a 240 (501)
T TIGR00911 165 IRLVAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVE---SLNPKNAFEGT-ETSAGGIVLA 240 (501)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---ccCcccccCCC-CCcHHHHHHH
Confidence 3467788888889999999655544 333333322233344555544331111 11222111000 01223343 4
Q ss_pred ecceeeeeccccccc
Q 003852 295 LGGIMLSITGTEALF 309 (791)
Q Consensus 295 LG~V~L~iTGaEALy 309 (791)
+..++.+.+|-|+.=
T Consensus 241 ~~~~~~af~G~e~~~ 255 (501)
T TIGR00911 241 FYSGIWAYGGWNYLN 255 (501)
T ss_pred HHHHHHHHHhHHHHh
Confidence 566777888888643
No 10
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=82.56 E-value=9.9 Score=42.58 Aligned_cols=177 Identities=18% Similarity=0.175 Sum_probs=101.8
Q ss_pred eEehhHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHhhhhhccccCcceeeecChHHHHHHHHhcC--cceeeee
Q 003852 218 VVVLVAVVILVGLFSLQHYGTDRVGWLFAPIVLLWFLLIGGIGMLNIWKYDSSVLKAFSPVYIYRYFRRGG--RDGWTSL 295 (791)
Q Consensus 218 ~Vv~is~~ILv~LF~iQ~~GT~kvg~~FgPIm~vWf~~i~~~GiynI~~~~P~Vl~AlnP~ya~~f~~~~g--~~g~~~L 295 (791)
....++.++++.++.++-+|....++...-..++=++.+..+.+..+...+......+++... ..+ ..-...+
T Consensus 133 ~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 207 (466)
T COG0531 133 LIILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNP-----GGGSFGGILAAI 207 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCccc-----ccchHHHHHHHH
Confidence 467789999999999999999888886666555555555555555454433222222221110 000 0123345
Q ss_pred cceeeeecccccc--ccC-CCCCCCcceehhhhHHHHHHHHhhhccchhhhccccc-ccc-----ccccc---ccc-Ccc
Q 003852 296 GGIMLSITGTEAL--FAD-LAHFPVSAIQIAFTVVVFPCLLLAYSGQAAYLMNHQD-HVV-----DAFYR---SIP-DSI 362 (791)
Q Consensus 296 G~V~L~iTGaEAL--yAD-lGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~p~-~~~-----npFy~---~~P-~~~ 362 (791)
+.++.+.+|-|+. +|+ +=+ .+|.|-.|-..-..-+.++-.+++-+....-|. +.. +|+.. ... .+.
T Consensus 208 ~~~~~~f~G~e~~~~~a~E~kn-p~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~ 286 (466)
T COG0531 208 LLAFFAFTGFEAIATLAEEVKN-PKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWG 286 (466)
T ss_pred HHHHHHhhcHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHH
Confidence 5667888898864 332 333 455566665554434444444444443333332 111 34432 223 356
Q ss_pred hHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHcCCCCc
Q 003852 363 YWPVFIVATAAAIVASQATISATFSIIKQALALGCFPR 400 (791)
Q Consensus 363 ~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr 400 (791)
.+-+.+++.+++.-+..+.+.+.--+..+.-+-|++|+
T Consensus 287 ~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~ 324 (466)
T COG0531 287 AIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPK 324 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 66666666666666667777777777778888999998
No 11
>TIGR00909 2A0306 amino acid transporter.
Probab=77.80 E-value=26 Score=39.38 Aligned_cols=168 Identities=18% Similarity=0.164 Sum_probs=80.2
Q ss_pred ehhHHHHHHHHHhhhcccccccc---cchhhHHHHHHHHHHHhhhhhccccCcceeeecChHHHHHHHHhcCccee-eee
Q 003852 220 VLVAVVILVGLFSLQHYGTDRVG---WLFAPIVLLWFLLIGGIGMLNIWKYDSSVLKAFSPVYIYRYFRRGGRDGW-TSL 295 (791)
Q Consensus 220 v~is~~ILv~LF~iQ~~GT~kvg---~~FgPIm~vWf~~i~~~GiynI~~~~P~Vl~AlnP~ya~~f~~~~g~~g~-~~L 295 (791)
..++++++++...+..+|....+ ..+..+.++=++.+.+.|+.+. ++.-+..+.|. +..+| ..+
T Consensus 134 ~~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~ 201 (429)
T TIGR00909 134 NLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHF---ASNNYTPFMPM---------GFGGVGAAT 201 (429)
T ss_pred cHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhC---cHHhcCCCCCC---------cHHHHHHHH
Confidence 34567777788888888865544 4666666554444445555433 22222222221 11121 112
Q ss_pred cceeeeecccccccc--CCCCCCCcceehhhhHHHHHHHHhhhccchhhhccc-c-c---ccccccc----ccccCcchH
Q 003852 296 GGIMLSITGTEALFA--DLAHFPVSAIQIAFTVVVFPCLLLAYSGQAAYLMNH-Q-D---HVVDAFY----RSIPDSIYW 364 (791)
Q Consensus 296 G~V~L~iTGaEALyA--DlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~-p-~---~~~npFy----~~~P~~~~~ 364 (791)
...+.+.+|=|+.-. +-=+-.+|.+..|-..-+.-+ .+.|+.-....... | + ..++|+. +...++.-+
T Consensus 202 ~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~-~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (429)
T TIGR00909 202 ALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVV-TLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGL 280 (429)
T ss_pred HHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHH-HHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHH
Confidence 334566677776543 323344566766654322221 22244333222211 1 1 1123432 222334444
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHcCCCCc
Q 003852 365 PVFIVATAAAIVASQATISATFSIIKQALALGCFPR 400 (791)
Q Consensus 365 P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr 400 (791)
-+.+.+.++..-+..+.+.+.=-++...-+.|.+|+
T Consensus 281 ~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~ 316 (429)
T TIGR00909 281 ILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPG 316 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 444444444444444545444445555557899997
No 12
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=77.48 E-value=13 Score=42.57 Aligned_cols=21 Identities=19% Similarity=0.575 Sum_probs=16.5
Q ss_pred CcHHHHHHHHHHHhhhhhhHh
Q 003852 500 GWVPLVIAAAFLVIMYVWHYG 520 (791)
Q Consensus 500 GW~pl~la~v~~~iM~~W~~G 520 (791)
-|.++++++++...+..|...
T Consensus 454 ny~~~~~~~~~~~~~~~~~~~ 474 (482)
T TIGR00907 454 NYAVVVFAGVLAISLVYWKYK 474 (482)
T ss_pred ChHhHHHHHHHHHHHHHheEe
Confidence 599999988888877777653
No 13
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=76.78 E-value=34 Score=39.36 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=13.8
Q ss_pred CcHHHHHHHHHHHhhhhhh
Q 003852 500 GWVPLVIAAAFLVIMYVWH 518 (791)
Q Consensus 500 GW~pl~la~v~~~iM~~W~ 518 (791)
-|.+++++++++....-|-
T Consensus 434 ny~~~~~~~~~~~~~~~~~ 452 (474)
T TIGR03813 434 RYVGLLIGLAALFVTAPFL 452 (474)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4788888888777666565
No 14
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=76.43 E-value=7.5 Score=43.35 Aligned_cols=247 Identities=15% Similarity=0.122 Sum_probs=130.3
Q ss_pred cchhhhhhhhcccccc-CCCCCCc--eEehhHHHHHHHHHhhhcccccccccc---hhhHHH-HHHHHHHHhhhhhcccc
Q 003852 195 TPAISVLSASGGIKVD-HPHMSNG--VVVLVAVVILVGLFSLQHYGTDRVGWL---FAPIVL-LWFLLIGGIGMLNIWKY 267 (791)
Q Consensus 195 TPAISVLSAVeGl~v~-~p~l~~~--~Vv~is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~-vWf~~i~~~GiynI~~~ 267 (791)
+.++...++.+-+... .|++.++ ....++.++++..+.+.-+|....+++ ++=+.+ +-++.+.+.|++...+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~ 170 (426)
T PF13520_consen 91 SLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFS 170 (426)
T ss_dssp HHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred cccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeeccc
Confidence 3334444455544432 2343221 245678888888999999998766654 333333 35555666677665431
Q ss_pred Ccce-----eeecChHHHHHHHHhcCcc-eeeeecceeeeeccccccccCCCCCCCcceehhhhHHHHHHHHhhhccchh
Q 003852 268 DSSV-----LKAFSPVYIYRYFRRGGRD-GWTSLGGIMLSITGTEALFADLAHFPVSAIQIAFTVVVFPCLLLAYSGQAA 341 (791)
Q Consensus 268 ~P~V-----l~AlnP~ya~~f~~~~g~~-g~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA 341 (791)
..- ....+|. +.. -+..+...+.+.+|-|+.=.-.+-.-+|.+..+=..-+.-+.++.-+..-+
T Consensus 171 -~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~k~ip~ai~~~~~~~~i~y~l~~~~ 240 (426)
T PF13520_consen 171 -GFNSLSFSLSTFFPS---------GWPGFLAGFSVAFFAFSGFEAIASLAEENKNKTIPRAIIISIIIVAIIYILFSIA 240 (426)
T ss_dssp -HHH----SHSCSSCS---------SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccccccccccccCCc---------cccchhhHHHHHHhhcccccccccccccccchhheeecccchhHHHHHHhhhhhe
Confidence 110 1112221 111 134456678888898875444444445666655443333333333333333
Q ss_pred hhccccc-c---ccc------ccccc-ccCcchHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHcCCCCceeEEecCCcc
Q 003852 342 YLMNHQD-H---VVD------AFYRS-IPDSIYWPVFIVATAAAIVASQATISATFSIIKQALALGCFPRVKVVHTSKKF 410 (791)
Q Consensus 342 ~ll~~p~-~---~~n------pFy~~-~P~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~~ 410 (791)
+...-|. + .+| .+++. -.++..+.+.+.+.++..-+-.+.+.+.--++.+.-+-|.+|+ +..|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~k-- 317 (426)
T PF13520_consen 241 LLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPK-WFAKVNK-- 317 (426)
T ss_dssp HHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSG-GGGTTSS--
T ss_pred eeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccchhh-hhhhccc--
Confidence 3333222 1 112 22332 2467888888888888888777777777777888888899994 2223331
Q ss_pred cCceeehhhHHHHHHHhh-hee--Eee---cCchhhhhhhhchhhHHHHHHHH
Q 003852 411 LGQIYIPDINWILMILCI-AVT--AGF---KNQSQIGNAYGTAVVIVMLATTL 457 (791)
Q Consensus 411 ~GQIYIP~vNw~Lmi~~l-~vv--~~F---~~s~~l~~AYGiAV~~~M~iTT~ 457 (791)
+| .|..--++...+- ++. ..| ++-+.+.+.+.+......+++.+
T Consensus 318 ~~---~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 367 (426)
T PF13520_consen 318 FG---TPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVIL 367 (426)
T ss_dssp SS---SCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHH
T ss_pred cC---CceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2544433333322 222 223 23456777776666666666633
No 15
>TIGR00930 2a30 K-Cl cotransporter.
Probab=74.20 E-value=24 Score=44.85 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=18.3
Q ss_pred EehhHHHHHHHHHhhhccccccccc
Q 003852 219 VVLVAVVILVGLFSLQHYGTDRVGW 243 (791)
Q Consensus 219 Vv~is~~ILv~LF~iQ~~GT~kvg~ 243 (791)
+-.++++++++++.+--+|....++
T Consensus 203 ~~iia~i~l~ll~~In~~Gvk~~ak 227 (953)
T TIGR00930 203 IRIYGTVTVVVLLGISFAGMEWENK 227 (953)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4457778888888888889854443
No 16
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=67.28 E-value=92 Score=35.50 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhhhcccccccccc
Q 003852 222 VAVVILVGLFSLQHYGTDRVGWL 244 (791)
Q Consensus 222 is~~ILv~LF~iQ~~GT~kvg~~ 244 (791)
++++++..+..+.-+|+...+++
T Consensus 124 ~~~~i~~~~~~ln~~gvk~~~~i 146 (435)
T PRK10435 124 ACIAIVWVFTFVNMLGGTWVSRL 146 (435)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 35566667888999998776664
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=66.07 E-value=76 Score=35.95 Aligned_cols=43 Identities=16% Similarity=0.026 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhhhcccccccccc---hhhHHHHHHHHHHHhhhhh
Q 003852 221 LVAVVILVGLFSLQHYGTDRVGWL---FAPIVLLWFLLIGGIGMLN 263 (791)
Q Consensus 221 ~is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~vWf~~i~~~Giyn 263 (791)
.+++++++.+..+.-+|+...+++ ..-..++-++.+.+.|++.
T Consensus 125 ~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l~~~~i~~~~~ 170 (438)
T PRK10655 125 LATIGVLWLCTVANFGGARITGQISSVTVWGVIIPVVGLSIIGWFW 170 (438)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677888999997665553 3333334444444555443
No 18
>PRK15049 L-asparagine permease; Provisional
Probab=60.84 E-value=46 Score=38.92 Aligned_cols=22 Identities=14% Similarity=0.071 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhhhccccccccc
Q 003852 222 VAVVILVGLFSLQHYGTDRVGW 243 (791)
Q Consensus 222 is~~ILv~LF~iQ~~GT~kvg~ 243 (791)
++.++++++..+.-+|....+.
T Consensus 147 ~~~~~~~l~~~iN~~gvk~~~~ 168 (499)
T PRK15049 147 FALAALTIVGTMNMIGVKWFAE 168 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777788888888665554
No 19
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=59.00 E-value=76 Score=34.59 Aligned_cols=86 Identities=12% Similarity=0.015 Sum_probs=51.9
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHHHHHHhhhcccCCCc---------HHHH
Q 003852 439 QIGNAYGTAVVIVMLATTLLMTLIMILVWRCHWILVLIFTALSLV----VECTYFSAVLFKVDQGGW---------VPLV 505 (791)
Q Consensus 439 ~l~~AYGiAV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~----ie~~f~sa~l~Kv~~GGW---------~pl~ 505 (791)
+-=..||.+|..+.++.++-++..+..+.+.+.+.++++.++++. +|-..+|+.-.+-..+.. +-++
T Consensus 13 ~k~~~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~~~~R~~lAvl 92 (301)
T PF14362_consen 13 NKYAGIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQALPRLLLAVL 92 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Confidence 334578999999999998888888888888876666666655554 555555543222211111 2334
Q ss_pred HHHHHHHhhhhhhHhHHHH
Q 003852 506 IAAAFLVIMYVWHYGTVKR 524 (791)
Q Consensus 506 la~v~~~iM~~W~~G~~~~ 524 (791)
+|.++...+..+-+..++.
T Consensus 93 iaivIs~pl~l~iF~~eI~ 111 (301)
T PF14362_consen 93 IAIVISEPLELKIFEKEID 111 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555444
No 20
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=55.00 E-value=18 Score=40.26 Aligned_cols=40 Identities=35% Similarity=0.751 Sum_probs=31.2
Q ss_pred HHhcCcceeeeecceeeeeccccc-----------------cccCCCCCCCcceehhh
Q 003852 284 FRRGGRDGWTSLGGIMLSITGTEA-----------------LFADLAHFPVSAIQIAF 324 (791)
Q Consensus 284 ~~~~g~~g~~~LG~V~L~iTGaEA-----------------LyADlGHFg~~~Ir~aw 324 (791)
+.|....|| +.|+|+|=+|||-| .|+|+|-||-.=+.+-|
T Consensus 287 ~tRKSt~gw-sIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vSi~F 343 (372)
T KOG3145|consen 287 FTRKSTVGW-SIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVSIFF 343 (372)
T ss_pred ceecccccc-ccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHHHHH
Confidence 456677899 66999999999965 68999999976554433
No 21
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=53.50 E-value=91 Score=35.37 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHhhhcccccccccc
Q 003852 221 LVAVVILVGLFSLQHYGTDRVGWL 244 (791)
Q Consensus 221 ~is~~ILv~LF~iQ~~GT~kvg~~ 244 (791)
.+++++++.+..+.-+|.+..+++
T Consensus 123 ~~~~~~~~~~~~ln~~g~~~~~~i 146 (442)
T TIGR00908 123 LAALVFYIVFIGINILGVGEAAKL 146 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 355666667778888888776664
No 22
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=48.83 E-value=2.9e+02 Score=33.04 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=26.7
Q ss_pred EehhHHHHHHHHHhhhccccccccc---chhhHHHHHHHHHHHhhhhh
Q 003852 219 VVLVAVVILVGLFSLQHYGTDRVGW---LFAPIVLLWFLLIGGIGMLN 263 (791)
Q Consensus 219 Vv~is~~ILv~LF~iQ~~GT~kvg~---~FgPIm~vWf~~i~~~Giyn 263 (791)
...+++++++++..+--+|+...++ .+.-+-++-++.+.+.|+..
T Consensus 161 ~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~ 208 (557)
T TIGR00906 161 PDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTK 208 (557)
T ss_pred chHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 3456677777777888889765554 44444444444445556543
No 23
>PRK10249 phenylalanine transporter; Provisional
Probab=44.72 E-value=1.5e+02 Score=34.23 Aligned_cols=102 Identities=25% Similarity=0.270 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhhhcccccccccc---hhhHHHHHHHHHHHhhhhhccccCcceeeecChHHHHHH--HHhcCcce-eeee
Q 003852 222 VAVVILVGLFSLQHYGTDRVGWL---FAPIVLLWFLLIGGIGMLNIWKYDSSVLKAFSPVYIYRY--FRRGGRDG-WTSL 295 (791)
Q Consensus 222 is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~vWf~~i~~~GiynI~~~~P~Vl~AlnP~ya~~f--~~~~g~~g-~~~L 295 (791)
++.++++++.++.-+|....+.+ +.=+-++..+.+.++|+.-+...++.- ..++.+.... +..++..| +..+
T Consensus 138 ~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (458)
T PRK10249 138 WAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGE--KASIDNLWRYGGFFATGWNGLILSL 215 (458)
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--CCChhhccCCCCCCCCcHHHHHHHH
Confidence 45666777777888888665542 333334444555555554433211110 1111111000 00123333 2345
Q ss_pred cceeeeecccccc--ccCCCCCCCcceehhhh
Q 003852 296 GGIMLSITGTEAL--FADLAHFPVSAIQIAFT 325 (791)
Q Consensus 296 G~V~L~iTGaEAL--yADlGHFg~~~Ir~aw~ 325 (791)
..++.+.+|-|.. .|+=-+-.+|.|-.|-.
T Consensus 216 ~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~ 247 (458)
T PRK10249 216 AVIMFSFGGLELIGITAAEARDPEKSIPKAVN 247 (458)
T ss_pred HHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHH
Confidence 5566778888865 55555566666665543
No 24
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=44.00 E-value=3e+02 Score=31.33 Aligned_cols=45 Identities=13% Similarity=0.290 Sum_probs=26.5
Q ss_pred ehhHHHHHHHHHhhhccccc---ccccchhhHHHHHHHHHHHhhhhhc
Q 003852 220 VLVAVVILVGLFSLQHYGTD---RVGWLFAPIVLLWFLLIGGIGMLNI 264 (791)
Q Consensus 220 v~is~~ILv~LF~iQ~~GT~---kvg~~FgPIm~vWf~~i~~~GiynI 264 (791)
..+++++++.+..+.-+|.. |+...+.=+.++=++.+.++|++.+
T Consensus 128 ~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~ 175 (445)
T PRK11357 128 KFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWF 175 (445)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566677777788888875 4444444334444445555666543
No 25
>PRK10746 putative transport protein YifK; Provisional
Probab=43.07 E-value=1.8e+02 Score=33.64 Aligned_cols=30 Identities=10% Similarity=0.057 Sum_probs=21.1
Q ss_pred chhHHHHHHHHHhhcceeecccccchhhhhhcccCC
Q 003852 43 KFSSLLLLRFAFQSLGVVYGDLGTSPLYVFYNTFPH 78 (791)
Q Consensus 43 ~~~~~~~l~La~~slGVVyGDIGTSPLYv~~~~f~~ 78 (791)
+.+.+....+++++. |||.-+..-+..+..
T Consensus 11 ~L~~~~~~~i~ig~~------IGtGlf~~~g~~l~~ 40 (461)
T PRK10746 11 GLEARHIELIALGGT------IGVGLFMGAASTLKW 40 (461)
T ss_pred cCcHHHHHHHHHHhh------hhhhHHHHhHHHHHh
Confidence 566677667766655 898888777777654
No 26
>PRK11021 putative transporter; Provisional
Probab=43.03 E-value=5.3e+02 Score=29.03 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=21.0
Q ss_pred EehhHHHHHHHHHhhhcccccccccch
Q 003852 219 VVLVAVVILVGLFSLQHYGTDRVGWLF 245 (791)
Q Consensus 219 Vv~is~~ILv~LF~iQ~~GT~kvg~~F 245 (791)
...+++++++.+..+.-+|....+++-
T Consensus 115 ~~~~~~~~~~~~~~ln~~Gv~~~~~~~ 141 (410)
T PRK11021 115 LLLAELLTLALLWLLNLRGASSSANLQ 141 (410)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 356778888888999999988777643
No 27
>COG4059 MtrE Tetrahydromethanopterin S-methyltransferase, subunit E [Coenzyme metabolism]
Probab=42.99 E-value=22 Score=38.00 Aligned_cols=30 Identities=23% Similarity=0.622 Sum_probs=25.8
Q ss_pred ccCCCcHHHHHHHHHHHhhhhhhHhHHHHH
Q 003852 496 VDQGGWVPLVIAAAFLVIMYVWHYGTVKRY 525 (791)
Q Consensus 496 v~~GGW~pl~la~v~~~iM~~W~~G~~~~~ 525 (791)
=.+|||..++.++++..+..+|++--+.+.
T Consensus 258 ~i~~G~isiv~Gliiv~iLii~N~kvEv~A 287 (304)
T COG4059 258 SIQGGWISIVAGLIIVLILIIWNRKVEVKA 287 (304)
T ss_pred ccccchhhhHHHHHHHHHHHHhcchhhhhh
Confidence 348999999999999999999998666554
No 28
>PRK11387 S-methylmethionine transporter; Provisional
Probab=38.94 E-value=2.2e+02 Score=32.89 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHhhcceeecccccchhhhhhcccC
Q 003852 43 KFSSLLLLRFAFQSLGVVYGDLGTSPLYVFYNTFP 77 (791)
Q Consensus 43 ~~~~~~~l~La~~slGVVyGDIGTSPLYv~~~~f~ 77 (791)
+.+.+....++.+++ |||..+........
T Consensus 15 ~L~~~~~~~l~ig~~------IG~Gif~~~g~~~~ 43 (471)
T PRK11387 15 TMKVRHLVMLSLGGV------IGTGLFFNTGYIIS 43 (471)
T ss_pred cCcHHHHHHHHHHhh------hhhHHHHHHHHHHH
Confidence 555666555555433 88886666666554
No 29
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=37.24 E-value=1.6e+02 Score=33.87 Aligned_cols=43 Identities=9% Similarity=-0.060 Sum_probs=25.4
Q ss_pred ccCcchHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHcCCCCc
Q 003852 358 IPDSIYWPVFIVATAAAIVASQATISATFSIIKQALALGCFPR 400 (791)
Q Consensus 358 ~P~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr 400 (791)
..++...-+.+.+.+++.-+..+.+.+.--+..+.-+-|.+|+
T Consensus 278 ~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~ 320 (473)
T TIGR00905 278 VGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPK 320 (473)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH
Confidence 3444444343434444444555566666666666778899997
No 30
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=36.84 E-value=4.9e+02 Score=29.99 Aligned_cols=45 Identities=9% Similarity=-0.205 Sum_probs=30.7
Q ss_pred cccCcchHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHcCCCCce
Q 003852 357 SIPDSIYWPVFIVATAAAIVASQATISATFSIIKQALALGCFPRV 401 (791)
Q Consensus 357 ~~P~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ 401 (791)
...+|..+.+.+.+.++..-+..+.+.++--+..+.-+-|.+|+.
T Consensus 273 ~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~ 317 (468)
T TIGR03810 273 MVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKY 317 (468)
T ss_pred HcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHH
Confidence 344555555555666666666667777777777777789999964
No 31
>PRK10238 aromatic amino acid transporter; Provisional
Probab=36.37 E-value=2.2e+02 Score=32.81 Aligned_cols=44 Identities=32% Similarity=0.347 Sum_probs=25.8
Q ss_pred ecceeeeeccccc--cccCCCCCCCcceehhhhHHHHHHHHhhhccc
Q 003852 295 LGGIMLSITGTEA--LFADLAHFPVSAIQIAFTVVVFPCLLLAYSGQ 339 (791)
Q Consensus 295 LG~V~L~iTGaEA--LyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQ 339 (791)
++.++.+.+|-|+ ..|.=-+-.+|.+-.|-.. +...+.+.|++=
T Consensus 206 ~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~-~~~~i~~~y~~~ 251 (456)
T PRK10238 206 MAIIMFSFGGLELVGITAAEADNPEQSIPKATNQ-VIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHH-HHHHHHHHHHHH
Confidence 4456677888887 3444445666777777542 234444556543
No 32
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=35.51 E-value=1.5e+02 Score=33.81 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHhhhccccccccc
Q 003852 221 LVAVVILVGLFSLQHYGTDRVGW 243 (791)
Q Consensus 221 ~is~~ILv~LF~iQ~~GT~kvg~ 243 (791)
.+.+++++.+..+.-+|+...++
T Consensus 127 ~~~~~~~~~~~~ln~~gvk~~~~ 149 (445)
T PRK10644 127 ITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_pred HHHHHHHHHHHHHHHhchHHHHH
Confidence 34566666777888888766655
No 33
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=33.72 E-value=3.8e+02 Score=31.57 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=23.8
Q ss_pred ceeeeecccccc--ccCCCCCCCcceehhhhHHHHHHHHhhhccchhh
Q 003852 297 GIMLSITGTEAL--FADLAHFPVSAIQIAFTVVVFPCLLLAYSGQAAY 342 (791)
Q Consensus 297 ~V~L~iTGaEAL--yADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ 342 (791)
+++.+.+|-|+. .|+==+--+|.+-.|-...+.-+.++.++|--++
T Consensus 202 ~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i 249 (507)
T TIGR00910 202 AFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGFSI 249 (507)
T ss_pred HHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888865 4444445566665555443333444444443333
No 34
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=33.28 E-value=1.9e+02 Score=30.05 Aligned_cols=21 Identities=14% Similarity=0.377 Sum_probs=16.8
Q ss_pred CCcHHHHHHHHHHHhhhhhhH
Q 003852 499 GGWVPLVIAAAFLVIMYVWHY 519 (791)
Q Consensus 499 GGW~pl~la~v~~~iM~~W~~ 519 (791)
.+|+-+++|++.+.+-+-|++
T Consensus 179 ~~~~~iiig~i~~~~~~~lkk 199 (206)
T PF06570_consen 179 PPWVYIIIGVIAFALRFYLKK 199 (206)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 389999999998888766653
No 35
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=33.15 E-value=10 Score=38.93 Aligned_cols=68 Identities=25% Similarity=0.415 Sum_probs=50.8
Q ss_pred hHHHHHH-HHHhHhCCcEEEeeecEEEecCCCchhHHHHHHHHHHH---HHhhccCCCcccccCCCCeEeeee
Q 003852 719 ETDELEF-LNSCRDAGVVHILGNTVVRASRGSKFYKKIAIDYIYAF---LRKICRENSVIFNVPHESLLNVGQ 787 (791)
Q Consensus 719 v~eEl~~-L~~A~eaGVvYIlG~~~vkar~~SsflKK~vIn~~Y~F---LRkNcR~~~~~L~IPh~~LlEVGM 787 (791)
..+|+.+ +++++++|+--++-.. .+.++=..+..|+-+||+|.- .+++.|.....+++|.++.+-||-
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSN-n~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmVGD 118 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSN-NKESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMVGD 118 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeC-CCHHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEEcc
Confidence 3445544 6678888875544332 566666788899999988765 367888899999999999999984
No 36
>PRK10580 proY putative proline-specific permease; Provisional
Probab=32.06 E-value=2.8e+02 Score=31.79 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=18.3
Q ss_pred CCCcHHHHHHHHHHHhhhhhhHhH
Q 003852 498 QGGWVPLVIAAAFLVIMYVWHYGT 521 (791)
Q Consensus 498 ~GGW~pl~la~v~~~iM~~W~~G~ 521 (791)
.+.++.+.++.+.+.+.+.++.-.
T Consensus 423 p~~~~~~~~~~~~~~~~~~~y~~~ 446 (457)
T PRK10580 423 PDTRISLYVGFAWIVLLLIGWMFK 446 (457)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888888888888887653
No 37
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=27.68 E-value=9.6e+02 Score=27.36 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHhhhcccccccccch
Q 003852 221 LVAVVILVGLFSLQHYGTDRVGWLF 245 (791)
Q Consensus 221 ~is~~ILv~LF~iQ~~GT~kvg~~F 245 (791)
.+++++++.+..+.-+|+...+.+-
T Consensus 128 ~~~~~~~~~~~~~n~~gv~~~~~~~ 152 (452)
T TIGR01773 128 LFSLILTIVLTLTNLYSVKSYGEFE 152 (452)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHH
Confidence 3566666667778888987776544
No 38
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=27.65 E-value=6.3e+02 Score=29.17 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=47.8
Q ss_pred cceeeeecccccc--ccCCCCCCCcceehhhhHHHHHHHHhhhccchhhhcc--cccc---cccccccc----ccCcchH
Q 003852 296 GGIMLSITGTEAL--FADLAHFPVSAIQIAFTVVVFPCLLLAYSGQAAYLMN--HQDH---VVDAFYRS----IPDSIYW 364 (791)
Q Consensus 296 G~V~L~iTGaEAL--yADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~--~p~~---~~npFy~~----~P~~~~~ 364 (791)
..++.+.+|-|+. .|.==+-.+|.|..|-. .+.-...+-|+-....+.. .+++ .++||-.. --++...
T Consensus 218 ~~~~~af~G~e~~~~~a~E~knP~r~iPrai~-~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 296 (469)
T PRK11049 218 QIAVFAFVGIELVGTTAAETKDPEKSLPRAIN-SIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAAS 296 (469)
T ss_pred HHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHH-HHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHH
Confidence 3455667787764 33333455666666653 2222334444444333321 1222 23565321 1122222
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHcCCCCc
Q 003852 365 PVFIVATAAAIVASQATISATFSIIKQALALGCFPR 400 (791)
Q Consensus 365 P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr 400 (791)
-+.+++.++.+-+..+.+.+.=-+....-+-|.+|+
T Consensus 297 ~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~ 332 (469)
T PRK11049 297 VINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPK 332 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 233333334444444444455555555567899996
No 39
>KOG3643 consensus GABA receptor [Signal transduction mechanisms]
Probab=25.13 E-value=52 Score=38.37 Aligned_cols=90 Identities=20% Similarity=0.258 Sum_probs=57.1
Q ss_pred HcCCCCceeEEecCCcccC----ceeehhhHHHHHHHhhheeEeecCchhhhhhhhchhhHHHHHHHHHHHHHHH-----
Q 003852 394 ALGCFPRVKVVHTSKKFLG----QIYIPDINWILMILCIAVTAGFKNQSQIGNAYGTAVVIVMLATTLLMTLIMI----- 464 (791)
Q Consensus 394 ~Lg~fPr~ki~hTS~~~~G----QIYIP~vNw~Lmi~~l~vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~~v~~----- 464 (791)
+.|-.||+-+...=++..| |+|+|.+= +..+-=|-.-=|-++-.+=-.+++|.+..+||++...=.-
T Consensus 225 sTG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~L----iVilSWVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvS 300 (459)
T KOG3643|consen 225 STGNYSRLSLSFQLRRNIGFYILQTYIPSTL----IVILSWVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVS 300 (459)
T ss_pred ccccceeEEEEEEEEeeccEEEEeeecchhh----hhHHhHhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCcc
Confidence 4788999999988888877 99999751 1111111222345555666789999999999998865221
Q ss_pred HHHhhhhHHHHHHHHHHHH-HHHH
Q 003852 465 LVWRCHWILVLIFTALSLV-VECT 487 (791)
Q Consensus 465 ~~w~~~~~~~~~~~~~F~~-ie~~ 487 (791)
.+.-.-+.+..+|+.+|++ +|-+
T Consensus 301 YVKAiDiYL~vCFvfVF~sLLEYA 324 (459)
T KOG3643|consen 301 YVKAIDVYLGVCFVFVFLSLLEYA 324 (459)
T ss_pred ceeeehhhhhHHHHHHHHHHHHHH
Confidence 1222234555666666665 4443
No 40
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=22.82 E-value=73 Score=25.79 Aligned_cols=28 Identities=18% Similarity=0.557 Sum_probs=15.0
Q ss_pred HHHHhhhhhhHhHHHHHHHHHhcCCChH
Q 003852 509 AFLVIMYVWHYGTVKRYEFEMHSKVSMA 536 (791)
Q Consensus 509 v~~~iM~~W~~G~~~~~~~~~~~~~~~~ 536 (791)
+++.....|.|-+++|.++|...++|++
T Consensus 20 ~~F~gi~~w~~~~~~k~~~e~aa~lpl~ 47 (49)
T PF05545_consen 20 VFFIGIVIWAYRPRNKKRFEEAANLPLD 47 (49)
T ss_pred HHHHHHHHHHHcccchhhHHHHHccCcc
Confidence 3344444555555545555666566665
No 41
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=21.34 E-value=6.6e+02 Score=28.55 Aligned_cols=137 Identities=20% Similarity=0.214 Sum_probs=86.0
Q ss_pred hhhhhhHHHHHHHHcCC-CCceeEEecCCcccCceeehhhHHHHHHHhhheeEeec-------CchhhhhhhhchhhHHH
Q 003852 381 TISATFSIIKQALALGC-FPRVKVVHTSKKFLGQIYIPDINWILMILCIAVTAGFK-------NQSQIGNAYGTAVVIVM 452 (791)
Q Consensus 381 ~ISg~FSii~Qai~Lg~-fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~l~vv~~F~-------~s~~l~~AYGiAV~~~M 452 (791)
+||-+|.-+.|..-+=. |||.|= +..|=.+.-+|+++..++-+..+ +.+....---.....-.
T Consensus 168 lis~~~l~l~qvqiv~rlF~R~~e---------K~~i~~vG~~L~i~~~il~ai~~f~~~~~~~~~~~~~lp~~~yl~~i 238 (348)
T PF08733_consen 168 LISNFFLQLAQVQIVIRLFPRQKE---------KRIIFWVGFILIILDQILWAINQFSYFDSDPNSFLDILPAFSYLFRI 238 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCc---------EEEEeeHHHHHHHHHHHHHHHHHhccCCCCccccccchHHHHHHHHH
Confidence 67888888889876644 598543 23466677777777665544433 22222222223344445
Q ss_pred HHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHHHHHHhhhcccCCCc---HHHHHHHHHHHhhhhhhHhH
Q 003852 453 LATTLLMTLIMILVWRC--------HWILVLIFTALSLVVECTYFSAVLFKVDQGGW---VPLVIAAAFLVIMYVWHYGT 521 (791)
Q Consensus 453 ~iTT~L~~~v~~~~w~~--------~~~~~~~~~~~F~~ie~~f~sa~l~Kv~~GGW---~pl~la~v~~~iM~~W~~G~ 521 (791)
.+-++...++..+.|.+ +.+...++-++...+..+||..-+.+..-=|| ++-+..++..++-+=|-+-=
T Consensus 239 al~~~ya~~v~~y~~~k~k~~~~~~~~~~L~il~~~~i~l~~vffI~dis~~~v~~w~~~~~~~~~~~~tVivWEWi~ri 318 (348)
T PF08733_consen 239 ALSTLYAAWVIYYIISKKKYCFDYKQMIPLAILNLLLILLPVVFFILDISNWWVSGWSEYFRWVLYVAATVIVWEWINRI 318 (348)
T ss_pred HHHHHHHHHHHHHHHhhhhhheecchHHHHHHHHHHHHHHHHHhheeEccchhhhhHHHHHHHHHHHHHhhhHHHhhhHH
Confidence 56667777777666654 34555666777778888999888888888888 56666666666655555444
Q ss_pred HHHHH
Q 003852 522 VKRYE 526 (791)
Q Consensus 522 ~~~~~ 526 (791)
+++.+
T Consensus 319 e~lEr 323 (348)
T PF08733_consen 319 ERLER 323 (348)
T ss_pred HHHHH
Confidence 43333
No 42
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=21.24 E-value=1.3e+03 Score=26.62 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=17.5
Q ss_pred EehhHHHHHHHHHhhhccccccccc
Q 003852 219 VVLVAVVILVGLFSLQHYGTDRVGW 243 (791)
Q Consensus 219 Vv~is~~ILv~LF~iQ~~GT~kvg~ 243 (791)
...++.+++++...+.-+|+...++
T Consensus 144 ~~~~~~~~~~~~~~in~~g~k~~~~ 168 (475)
T TIGR03428 144 AVLLGSVLLVLTTVINCIGVEWMSR 168 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3456666777788888888766555
No 43
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=20.93 E-value=73 Score=36.62 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=21.2
Q ss_pred eeeecceeeeecccc--ccccCCCCCCCcceehhhh
Q 003852 292 WTSLGGIMLSITGTE--ALFADLAHFPVSAIQIAFT 325 (791)
Q Consensus 292 ~~~LG~V~L~iTGaE--ALyADlGHFg~~~Ir~aw~ 325 (791)
|..+.-.+.+.+|-| +.+|+==.=-+|+|..|-.
T Consensus 203 ~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~ 238 (478)
T PF00324_consen 203 FAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATL 238 (478)
T ss_pred HHhhhhhhcccccccccccccccCCCchhhhhhHhh
Confidence 445566678888888 3455555555666655544
No 44
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=20.76 E-value=33 Score=38.03 Aligned_cols=60 Identities=20% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHHh--hhhHHHHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHH---HHHHHhhhhhhHhHHHHH
Q 003852 463 MILVWR--CHWILVLIFTALSLVVECTYFSAVLFKVDQGGWVPLVIA---AAFLVIMYVWHYGTVKRY 525 (791)
Q Consensus 463 ~~~~w~--~~~~~~~~~~~~F~~ie~~f~sa~l~Kv~~GGW~pl~la---~v~~~iM~~W~~G~~~~~ 525 (791)
|.+.|+ -++|..+.|++.|+.-=++...|.+. +=+||++++- .++|.-.++|-|-+....
T Consensus 126 m~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L---~qaWfT~L~dL~WL~LFlaiLIWlY~H~~~~ 190 (381)
T PF05297_consen 126 MWLLRELGASFWTILAFCLAFLLAIVLLIIAVLL---HQAWFTILVDLYWLLLFLAILIWLYVHDQRH 190 (381)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 444455 36788888888776654455555554 6789999865 456777789988766553
Done!