Query 003852
Match_columns 791
No_of_seqs 252 out of 757
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 06:09:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 96.6 0.034 1.2E-06 61.3 15.8 100 219-325 130-239 (511)
2 3gia_A Uncharacterized protein 96.4 0.0097 3.3E-07 64.4 9.9 106 193-309 98-208 (444)
3 3l1l_A Arginine/agmatine antip 95.6 0.04 1.4E-06 59.4 10.2 100 200-308 105-210 (445)
4 2l6p_A PHAC1, PHAC2 and PHAD g 20.1 40 0.0014 31.3 1.8 22 761-784 30-51 (124)
5 2bm3_A Type 2 cohesin, scaffol 18.9 30 0.001 33.8 0.7 11 267-277 45-55 (166)
6 1nrp_R Receptor based peptide 16.8 43 0.0015 22.8 0.8 17 340-356 4-20 (26)
7 3luu_A Uncharacterized protein 15.6 50 0.0017 29.2 1.3 16 761-776 35-50 (101)
8 2l6n_A Uncharacterized protein 15.3 60 0.0021 30.5 1.8 14 761-774 37-50 (132)
9 2rdd_B UPF0092 membrane protei 14.6 2.3E+02 0.0077 20.9 4.4 33 499-531 1-33 (37)
10 3ghp_A Cellulosomal scaffoldin 11.6 62 0.0021 33.0 0.7 13 265-277 46-58 (227)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.58 E-value=0.034 Score=61.26 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=54.8
Q ss_pred EehhHHHHHHHHHhhhcccccccccchhhH----HHHHHHHHHHhhhhhccccCccee----eecChHHHHHHHHhcCcc
Q 003852 219 VVLVAVVILVGLFSLQHYGTDRVGWLFAPI----VLLWFLLIGGIGMLNIWKYDSSVL----KAFSPVYIYRYFRRGGRD 290 (791)
Q Consensus 219 Vv~is~~ILv~LF~iQ~~GT~kvg~~FgPI----m~vWf~~i~~~GiynI~~~~P~Vl----~AlnP~ya~~f~~~~g~~ 290 (791)
...+++++++++..+--+|....+++..-. +++-++.+.++|++.+...+|.-+ ..+.|.+ .+..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVG 202 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-------ccch
Confidence 456788888888899999988777654322 222344555667766654333221 1122211 1234
Q ss_pred eeeeecceeeeeccccccccCCCCCC--Ccceehhhh
Q 003852 291 GWTSLGGIMLSITGTEALFADLAHFP--VSAIQIAFT 325 (791)
Q Consensus 291 g~~~LG~V~L~iTGaEALyADlGHFg--~~~Ir~aw~ 325 (791)
+|..+..++.+.+|-|+.-.=-+-.- +|.+..|-.
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~ 239 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAML 239 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHH
Confidence 56667788899999998644333332 344544433
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.40 E-value=0.0097 Score=64.35 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=55.4
Q ss_pred cccchhhhhhhhccccccCCCCCCc-eEehhHHHHHHHHHhhhccccccccc---chhhHHHHHHHHHHHhhhhhccccC
Q 003852 193 ILTPAISVLSASGGIKVDHPHMSNG-VVVLVAVVILVGLFSLQHYGTDRVGW---LFAPIVLLWFLLIGGIGMLNIWKYD 268 (791)
Q Consensus 193 viTPAISVLSAVeGl~v~~p~l~~~-~Vv~is~~ILv~LF~iQ~~GT~kvg~---~FgPIm~vWf~~i~~~GiynI~~~~ 268 (791)
+++.|....+..+-+....|...++ +...+++++++.+..+.-+|....++ .+..+.++=++.+.+.|+.+. +
T Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~ 174 (444)
T 3gia_A 98 VISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---H 174 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C
Confidence 3455555554444443333332221 23456788888888888889876655 455555554555555565543 3
Q ss_pred cceeee-cChHHHHHHHHhcCcceeeeecceeeeeccccccc
Q 003852 269 SSVLKA-FSPVYIYRYFRRGGRDGWTSLGGIMLSITGTEALF 309 (791)
Q Consensus 269 P~Vl~A-lnP~ya~~f~~~~g~~g~~~LG~V~L~iTGaEALy 309 (791)
|+-+.. ++|.-...+ +..+...+.+.+|-|+.-
T Consensus 175 ~~~~~~~~~~~g~~~~--------~~~~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 175 PSYVIPDLAPSAVSGM--------IFASAIFFLSYMGFGVIT 208 (444)
T ss_dssp GGGTSCCCSHHHHHHH--------HHHHHHGGGGGTHHHHHH
T ss_pred hhhcCCCCCCcchHHH--------HHHHHHHHHHHHhHHHHH
Confidence 443322 333211111 123344567888998763
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=95.63 E-value=0.04 Score=59.44 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=46.9
Q ss_pred hhhhhccccccCCCCCCce-EehhHHHHHHHHHhhhcccccccccc---hhhHHHHHHHHHHHhhhhhccccCccee-ee
Q 003852 200 VLSASGGIKVDHPHMSNGV-VVLVAVVILVGLFSLQHYGTDRVGWL---FAPIVLLWFLLIGGIGMLNIWKYDSSVL-KA 274 (791)
Q Consensus 200 VLSAVeGl~v~~p~l~~~~-Vv~is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~vWf~~i~~~GiynI~~~~P~Vl-~A 274 (791)
..+..+=++...|...+++ ...+++++++.+..+--+|....+++ +.++.++=++.+.+.|+. ..+|+.+ ..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~~~~ 181 (445)
T 3l1l_A 105 VVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF---WFRGETYMAA 181 (445)
T ss_dssp HHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCCCCCCCCC
T ss_pred HHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhChhhcccc
Confidence 3344444443445433221 33466777777778888888776664 444444333334444443 3345443 33
Q ss_pred cChHHHHHHHHhcCcce-eeeecceeeeecccccc
Q 003852 275 FSPVYIYRYFRRGGRDG-WTSLGGIMLSITGTEAL 308 (791)
Q Consensus 275 lnP~ya~~f~~~~g~~g-~~~LG~V~L~iTGaEAL 308 (791)
++|.-.- +..+ +..+..++.+.+|-|+.
T Consensus 182 ~~~~~~~------~~~~~~~~~~~~~~af~G~e~~ 210 (445)
T 3l1l_A 182 WNVSGLG------TFGAIQSTLNVTLWSFIGVESA 210 (445)
T ss_dssp -----------------HHHHHHHHHHTTTTTTHH
T ss_pred cCccCCc------cHHHHHHHHHHHHHHHHhHHHH
Confidence 4442100 0111 12234456677888865
No 4
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=20.13 E-value=40 Score=31.26 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=15.2
Q ss_pred HHHHHhhccCCCcccccCCCCeEe
Q 003852 761 YAFLRKICRENSVIFNVPHESLLN 784 (791)
Q Consensus 761 Y~FLRkNcR~~~~~L~IPh~~LlE 784 (791)
|.|||.||+++...-. .+++++
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l~ 51 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVLQ 51 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCCC
T ss_pred HHHHHhcCCCcccCCC--Cccccc
Confidence 5799999999865443 555543
No 5
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=18.91 E-value=30 Score=33.84 Aligned_cols=11 Identities=55% Similarity=0.896 Sum_probs=4.4
Q ss_pred cCcceeeecCh
Q 003852 267 YDSSVLKAFSP 277 (791)
Q Consensus 267 ~~P~Vl~AlnP 277 (791)
|||+||+|.||
T Consensus 45 YDP~VLqaVn~ 55 (166)
T 2bm3_A 45 YDPKVLMAVDP 55 (166)
T ss_dssp CCTTTEEEECT
T ss_pred ECccceEeecC
Confidence 34444444443
No 6
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=16.84 E-value=43 Score=22.85 Aligned_cols=17 Identities=12% Similarity=0.550 Sum_probs=14.5
Q ss_pred hhhhccccccccccccc
Q 003852 340 AAYLMNHQDHVVDAFYR 356 (791)
Q Consensus 340 aA~ll~~p~~~~npFy~ 356 (791)
-++|++||++.-.||+.
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36899999999999985
No 7
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=15.63 E-value=50 Score=29.18 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=9.8
Q ss_pred HHHHHhhccCCCcccc
Q 003852 761 YAFLRKICRENSVIFN 776 (791)
Q Consensus 761 Y~FLRkNcR~~~~~L~ 776 (791)
|.|||.||+.+...-.
T Consensus 35 ~~wLRd~c~ca~c~~~ 50 (101)
T 3luu_A 35 FEHLRVECPCAECKGH 50 (101)
T ss_dssp HHHHHHTCCCC-----
T ss_pred HHHHHhhCCChhhcCc
Confidence 6799999997765443
No 8
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=15.26 E-value=60 Score=30.47 Aligned_cols=14 Identities=21% Similarity=0.199 Sum_probs=11.5
Q ss_pred HHHHHhhccCCCcc
Q 003852 761 YAFLRKICRENSVI 774 (791)
Q Consensus 761 Y~FLRkNcR~~~~~ 774 (791)
|.|||.||+++...
T Consensus 37 ~~wLRd~Cpcaec~ 50 (132)
T 2l6n_A 37 CELLRVYSPSAEVH 50 (132)
T ss_dssp HHHHHHSCSCSSSS
T ss_pred HHHHHhcCCCcccC
Confidence 57999999987654
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=14.57 E-value=2.3e+02 Score=20.88 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHhhhhhhHhHHHHHHHHHhc
Q 003852 499 GGWVPLVIAAAFLVIMYVWHYGTVKRYEFEMHS 531 (791)
Q Consensus 499 GGW~pl~la~v~~~iM~~W~~G~~~~~~~~~~~ 531 (791)
|||..++.-++++.+||..-.-..+|.+.+.++
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~iRPQ~Kr~K~~~~ 33 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKK 33 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 10
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=11.64 E-value=62 Score=33.00 Aligned_cols=13 Identities=54% Similarity=0.915 Sum_probs=0.0
Q ss_pred cccCcceeeecCh
Q 003852 265 WKYDSSVLKAFSP 277 (791)
Q Consensus 265 ~~~~P~Vl~AlnP 277 (791)
++|||+||+|+||
T Consensus 46 IKYDP~vLQaVnp 58 (227)
T 3ghp_A 46 IKYDPTVLQAVNP 58 (227)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChhheecccC
Done!