Query 003852
Match_columns 791
No_of_seqs 252 out of 757
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 06:10:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003852.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003852hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 24.2 23 0.0017 32.5 3.4 122 330-464 12-135 (173)
2 d2e74h1 f.23.27.1 (H:3-29) Pet 14.5 43 0.0031 21.5 1.9 20 500-519 5-24 (27)
3 d1or7a2 a.177.1.1 (A:-1-111) S 12.7 53 0.0038 26.6 2.7 24 749-772 73-96 (113)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 8.4 56 0.0041 24.7 1.2 41 329-371 14-54 (57)
5 d1f2qa2 b.1.1.4 (A:86-174) IgE 6.9 1.1E+02 0.0081 23.5 2.4 29 597-625 47-75 (89)
6 d1iray2 b.1.1.4 (Y:102-204) Ty 6.4 1.1E+02 0.0082 24.5 2.3 26 598-623 57-82 (103)
7 d1f97a1 b.1.1.1 (A:27-128) Jun 6.1 1.1E+02 0.0079 23.6 1.9 24 601-624 67-90 (102)
8 d1jl0a_ d.156.1.1 (A:) S-adeno 6.0 1.1E+02 0.0079 30.5 2.2 39 700-740 109-147 (325)
9 d2a65a1 f.54.1.1 (A:5-513) Na( 5.6 4.4E+02 0.032 26.5 7.0 86 446-531 347-435 (509)
10 d1pw4a_ f.38.1.1 (A:) Glycerol 5.3 8.3E+02 0.06 22.0 8.5 75 436-534 373-447 (447)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=24.15 E-value=23 Score=32.55 Aligned_cols=122 Identities=13% Similarity=0.184 Sum_probs=72.1
Q ss_pred HHHHhhhccc--hhhhccccccccccccccccCcchHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHcCCCCceeEEecC
Q 003852 330 PCLLLAYSGQ--AAYLMNHQDHVVDAFYRSIPDSIYWPVFIVATAAAIVASQATISATFSIIKQALALGCFPRVKVVHTS 407 (791)
Q Consensus 330 P~L~L~Y~GQ--aA~ll~~p~~~~npFy~~~P~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS 407 (791)
|-|++|.+|+ +|+++++-|+.-+-+-. =..+.|+ ++-++.-++||+.. ++-+++++|-.-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchh---HH
Confidence 4455555554 46677665544332211 1256666 66788889999874 888999999643211 11
Q ss_pred CcccCceeehhhHHHHHHHhhheeEeecCchhhhhhhhchhhHHHHHHHHHHHHHHH
Q 003852 408 KKFLGQIYIPDINWILMILCIAVTAGFKNQSQIGNAYGTAVVIVMLATTLLMTLIMI 464 (791)
Q Consensus 408 ~~~~GQIYIP~vNw~Lmi~~l~vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~~v~~ 464 (791)
+....++.+-.+|=+.+...+.....+++...++-+=|++...+|.+.+++=+++=.
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~lPl 135 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAMLPF 135 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223445677777776665555554555666666666666666666666665544433
No 2
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.46 E-value=43 Score=21.53 Aligned_cols=20 Identities=35% Similarity=0.886 Sum_probs=15.5
Q ss_pred CcHHHHHHHHHHHhhhhhhH
Q 003852 500 GWVPLVIAAAFLVIMYVWHY 519 (791)
Q Consensus 500 GW~pl~la~v~~~iM~~W~~ 519 (791)
||+.++.-..-..-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888887777777888854
No 3
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=12.65 E-value=53 Score=26.64 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.1
Q ss_pred CchhHHHHHHHHHHHHHhhccCCC
Q 003852 749 SKFYKKIAIDYIYAFLRKICRENS 772 (791)
Q Consensus 749 SsflKK~vIn~~Y~FLRkNcR~~~ 772 (791)
.+|+.+++-|.+++++|++.|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998754
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.43 E-value=56 Score=24.72 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=26.8
Q ss_pred HHHHHhhhccchhhhccccccccccccccccCcchHHHHHHHH
Q 003852 329 FPCLLLAYSGQAAYLMNHQDHVVDAFYRSIPDSIYWPVFIVAT 371 (791)
Q Consensus 329 ~P~L~L~Y~GQaA~ll~~p~~~~npFy~~~P~~~~~P~~vlAt 371 (791)
+-++++--++=+.|+..+... +.-|.++|+.+.|-++-+.|
T Consensus 14 ~~~i~i~~~s~~~y~~E~~~~--~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 14 LLVIVLLAGSYLAVLAERGAP--GAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHTTST--TCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCC--Cccccccchhhhhheeeeec
Confidence 334444455666677776442 33489999999998776544
No 5
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.87 E-value=1.1e+02 Score=23.50 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=23.0
Q ss_pred CCceEEEEEecCCCCcEEEEEEEeecccC
Q 003852 597 EEERFLVKRIGPKNFHMFRCVARYGYKDL 625 (791)
Q Consensus 597 ~~eR~~v~~~~~~~~~~yrv~~ryGy~d~ 625 (791)
....+.+..+...+.|.|+|.++.++.+.
T Consensus 47 ~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 47 ENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp CSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred ccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 44678888888777899999999887543
No 6
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.39 E-value=1.1e+02 Score=24.50 Aligned_cols=26 Identities=27% Similarity=0.582 Sum_probs=21.3
Q ss_pred CceEEEEEecCCCCcEEEEEEEeecc
Q 003852 598 EERFLVKRIGPKNFHMFRCVARYGYK 623 (791)
Q Consensus 598 ~eR~~v~~~~~~~~~~yrv~~ryGy~ 623 (791)
+..+.+..+...+.|.|+|.+++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 45678888888888999999987664
No 7
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.09 E-value=1.1e+02 Score=23.58 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=18.8
Q ss_pred EEEEEecCCCCcEEEEEEEeeccc
Q 003852 601 FLVKRIGPKNFHMFRCVARYGYKD 624 (791)
Q Consensus 601 ~~v~~~~~~~~~~yrv~~ryGy~d 624 (791)
+.+.++...+.|.|+|.++..+.+
T Consensus 67 L~I~~v~~~D~G~Y~C~a~n~~g~ 90 (102)
T d1f97a1 67 ITFSSVTRKDNGEYTCMVSEEGGQ 90 (102)
T ss_dssp EEESCCCGGGCEEEEEEEEETTSS
T ss_pred EEEeECCccCCEEEEEEEEECCCC
Confidence 457777777889999999876654
No 8
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.04 E-value=1.1e+02 Score=30.54 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=0.0
Q ss_pred CCccccccccCcccCCCcchHHHHHHHHHhHhCCcEEEeee
Q 003852 700 SPLHVNSTVMSSSQMSSHTETDELEFLNSCRDAGVVHILGN 740 (791)
Q Consensus 700 ~~~~f~~~~~~~~~~~~~~v~eEl~~L~~A~eaGVvYIlG~ 740 (791)
+|..|..+...+.+ ..+-++|.+.|++....|..|++|+
T Consensus 109 sRknf~fP~~Q~~p--H~sf~~Ev~~L~~~f~~G~aY~~G~ 147 (325)
T d1jl0a_ 109 SRKNFMKPSHQGYP--HRNFQEEIEFLNAIFPNGAGYCMGR 147 (325)
T ss_dssp EEECCSSGGGCCTT--CSSHHHHHHHHHTTCSSEEEEEESC
T ss_pred ecccCcCcccCCcc--cCCHHHHHHHHHHhCCCCceEEecC
No 9
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=5.55 E-value=4.4e+02 Score=26.45 Aligned_cols=86 Identities=10% Similarity=0.155 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHHhhhcccC--CCcHHHHHHHHHHHhhhhhhHhHH
Q 003852 446 TAVVIVMLATTLLMTLIMI-LVWRCHWILVLIFTALSLVVECTYFSAVLFKVDQ--GGWVPLVIAAAFLVIMYVWHYGTV 522 (791)
Q Consensus 446 iAV~~~M~iTT~L~~~v~~-~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~Kv~~--GGW~pl~la~v~~~iM~~W~~G~~ 522 (791)
.+.+....+.-..++.+.- .-|+++....+...++++..=..+++.......| .+=+.+.+.+.+.++...|.||.+
T Consensus 347 ~gl~s~i~~~e~~v~~l~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~ 426 (509)
T d2a65a1 347 AGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGAD 426 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHHHTTTHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHhccccchhHHHHHhcCCchhhhhhheeEEEEhhhhHHHHhcchHHHHHHHHHHHHHHHHHHHHHheeeeEecHH
Q ss_pred HHHHHHHhc
Q 003852 523 KRYEFEMHS 531 (791)
Q Consensus 523 ~~~~~~~~~ 531 (791)
+..+...+.
T Consensus 427 r~~~di~~~ 435 (509)
T d2a65a1 427 KAWEEINRG 435 (509)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
No 10
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.34 E-value=8.3e+02 Score=22.03 Aligned_cols=75 Identities=15% Similarity=0.040 Sum_probs=0.0
Q ss_pred CchhhhhhhhchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHHHHHhhh
Q 003852 436 NQSQIGNAYGTAVVIVMLATTLLMTLIMILVWRCHWILVLIFTALSLVVECTYFSAVLFKVDQGGWVPLVIAAAFLVIMY 515 (791)
Q Consensus 436 ~s~~l~~AYGiAV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~Kv~~GGW~pl~la~v~~~iM~ 515 (791)
..+..+.+.|+.-+...+..+++..++.-.+....-+.... |+-...+++...+++
T Consensus 373 p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~------------------------~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 373 PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF------------------------MVMIGGSILAVILLI 428 (447)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH------------------------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH------------------------HHHHHHHHHHHHHHH
Q ss_pred hhhHhHHHHHHHHHhcCCC
Q 003852 516 VWHYGTVKRYEFEMHSKVS 534 (791)
Q Consensus 516 ~W~~G~~~~~~~~~~~~~~ 534 (791)
.....++++.+...++..|
T Consensus 429 ~~~~~~~~r~~~~~~e~~P 447 (447)
T d1pw4a_ 429 VVMIGEKRRHEQLLQELVP 447 (447)
T ss_dssp HHHHHHHHHHHGGGGGSCC
T ss_pred HHHHhccccHHHHHHhCCC
Done!