Query 003853
Match_columns 791
No_of_seqs 551 out of 2182
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 13:12:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03016 Exostosin: Exostosin 100.0 7.7E-52 1.7E-56 448.0 21.8 298 348-702 2-302 (302)
2 KOG1021 Acetylglucosaminyltran 100.0 5.1E-48 1.1E-52 438.7 25.9 331 349-725 71-434 (464)
3 KOG2264 Exostosin EXT1L [Signa 99.9 4.7E-23 1E-27 223.2 17.4 270 398-724 218-510 (907)
4 KOG1022 Acetylglucosaminyltran 99.7 5.5E-17 1.2E-21 176.4 12.9 292 399-774 127-423 (691)
5 KOG1225 Teneurin-1 and related 99.6 1E-15 2.2E-20 172.5 10.6 122 115-305 244-365 (525)
6 KOG1225 Teneurin-1 and related 99.5 1.2E-13 2.6E-18 155.8 10.4 170 112-309 168-343 (525)
7 KOG1226 Integrin beta subunit 99.5 1.1E-13 2.4E-18 157.9 10.0 144 125-308 467-621 (783)
8 KOG1226 Integrin beta subunit 98.9 1.2E-09 2.6E-14 125.3 8.0 134 126-309 515-653 (783)
9 KOG1219 Uncharacterized conser 98.9 1.3E-09 2.8E-14 133.5 6.7 107 121-310 3865-3980(4289)
10 KOG0994 Extracellular matrix g 98.8 2.9E-08 6.3E-13 116.5 11.2 199 97-308 882-1147(1758)
11 KOG4289 Cadherin EGF LAG seven 98.7 1E-08 2.2E-13 121.9 3.8 71 231-311 1242-1320(2531)
12 KOG0994 Extracellular matrix g 98.6 2.4E-07 5.3E-12 109.0 10.4 52 256-308 1035-1099(1758)
13 KOG4289 Cadherin EGF LAG seven 98.2 2.7E-06 5.8E-11 102.1 8.6 72 121-195 1717-1799(2531)
14 KOG1836 Extracellular matrix g 98.1 1.4E-05 3E-10 102.1 13.0 103 95-202 701-814 (1705)
15 KOG1219 Uncharacterized conser 98.1 1.8E-06 3.9E-11 107.1 4.3 72 230-310 3866-3941(4289)
16 PF07974 EGF_2: EGF-like domai 98.0 6.2E-06 1.4E-10 58.1 3.5 27 125-151 6-32 (32)
17 KOG1836 Extracellular matrix g 97.7 0.00031 6.7E-09 90.2 13.0 195 96-309 752-1023(1705)
18 KOG1217 Fibrillins and related 97.6 0.0004 8.7E-09 79.5 12.6 65 236-310 280-356 (487)
19 KOG4260 Uncharacterized conser 97.6 9.8E-05 2.1E-09 75.8 6.5 131 142-302 132-304 (350)
20 PF07974 EGF_2: EGF-like domai 97.5 6.2E-05 1.3E-09 53.1 2.7 25 282-306 6-32 (32)
21 KOG3512 Netrin, axonal chemotr 97.3 0.0012 2.6E-08 72.7 10.8 56 257-313 413-484 (592)
22 KOG1214 Nidogen and related ba 97.1 0.0012 2.6E-08 76.8 8.3 146 125-305 700-860 (1289)
23 smart00051 DSL delta serrate l 97.0 0.00066 1.4E-08 55.8 3.3 45 259-306 18-63 (63)
24 KOG1217 Fibrillins and related 96.9 0.0074 1.6E-07 69.1 12.6 150 127-306 136-306 (487)
25 KOG1214 Nidogen and related ba 96.7 0.0063 1.4E-07 71.1 9.9 105 121-270 738-859 (1289)
26 PF00008 EGF: EGF-like domain 96.6 0.0013 2.8E-08 46.5 2.3 27 124-150 3-32 (32)
27 PF00852 Glyco_transf_10: Glyc 96.3 0.0058 1.3E-07 67.9 6.2 145 536-703 141-296 (349)
28 PF12661 hEGF: Human growth fa 96.2 0.0022 4.8E-08 35.7 1.1 13 139-151 1-13 (13)
29 KOG1218 Proteins containing Ca 95.6 0.14 3.1E-06 55.7 12.9 155 134-303 45-209 (316)
30 PF12661 hEGF: Human growth fa 95.6 0.0062 1.3E-07 34.0 1.1 13 294-306 1-13 (13)
31 smart00179 EGF_CA Calcium-bind 95.4 0.02 4.4E-07 41.6 3.7 32 121-152 3-39 (39)
32 PF00053 Laminin_EGF: Laminin 95.4 0.011 2.4E-07 46.0 2.3 27 127-153 3-33 (49)
33 smart00051 DSL delta serrate l 95.2 0.019 4.2E-07 47.2 3.5 26 125-151 38-63 (63)
34 PF00008 EGF: EGF-like domain 94.9 0.014 3E-07 41.2 1.5 25 281-305 3-32 (32)
35 KOG4260 Uncharacterized conser 94.7 0.021 4.6E-07 59.1 2.9 41 262-308 132-183 (350)
36 cd00054 EGF_CA Calcium-binding 94.6 0.046 1E-06 39.1 3.6 32 121-152 3-38 (38)
37 cd00055 EGF_Lam Laminin-type e 94.5 0.031 6.8E-07 43.7 2.7 28 126-153 3-34 (50)
38 PF01414 DSL: Delta serrate li 94.5 0.011 2.5E-07 48.6 0.2 45 257-306 16-63 (63)
39 cd03820 GT1_amsD_like This fam 94.4 0.14 3.1E-06 54.6 8.7 95 628-724 243-340 (348)
40 cd03814 GT1_like_2 This family 94.4 0.13 2.7E-06 55.9 8.4 94 628-724 257-353 (364)
41 KOG1218 Proteins containing Ca 94.4 0.38 8.3E-06 52.3 12.0 51 259-310 125-179 (316)
42 cd03801 GT1_YqgM_like This fam 94.1 0.17 3.6E-06 54.3 8.3 94 628-724 266-363 (374)
43 PF00534 Glycos_transf_1: Glyc 93.9 0.12 2.6E-06 50.6 6.1 85 628-715 83-170 (172)
44 smart00180 EGF_Lam Laminin-typ 93.9 0.065 1.4E-06 41.2 3.3 23 131-153 11-33 (46)
45 cd00053 EGF Epidermal growth f 93.7 0.085 1.8E-06 37.1 3.5 29 124-152 5-36 (36)
46 cd03819 GT1_WavL_like This fam 93.7 0.23 4.9E-06 54.2 8.5 91 628-721 254-349 (355)
47 cd03823 GT1_ExpE7_like This fa 93.6 0.19 4.2E-06 54.2 7.8 88 628-718 253-344 (359)
48 cd03822 GT1_ecORF704_like This 93.3 0.25 5.4E-06 53.7 8.1 93 628-724 258-355 (366)
49 smart00181 EGF Epidermal growt 93.1 0.13 2.7E-06 36.6 3.6 27 125-152 6-35 (35)
50 PHA02887 EGF-like protein; Pro 93.0 0.11 2.5E-06 47.2 3.9 33 121-154 84-124 (126)
51 PLN02871 UDP-sulfoquinovose:DA 92.7 0.34 7.3E-06 56.0 8.4 93 629-724 323-421 (465)
52 cd03818 GT1_ExpC_like This fam 92.6 1.3 2.8E-05 49.8 12.8 92 629-723 292-387 (396)
53 PRK09814 beta-1,6-galactofuran 92.4 0.26 5.6E-06 54.4 6.7 90 628-723 217-318 (333)
54 cd04962 GT1_like_5 This family 92.3 0.45 9.7E-06 52.4 8.5 93 629-724 262-358 (371)
55 KOG2619 Fucosyltransferase [Ca 92.3 0.62 1.3E-05 51.7 9.3 124 565-707 193-321 (372)
56 cd03800 GT1_Sucrose_synthase T 92.3 0.36 7.8E-06 53.6 7.7 93 629-724 294-390 (398)
57 cd03794 GT1_wbuB_like This fam 92.1 0.46 9.9E-06 51.6 8.1 94 628-724 285-387 (394)
58 cd03808 GT1_cap1E_like This fa 92.1 0.52 1.1E-05 50.4 8.5 93 628-723 254-350 (359)
59 cd05844 GT1_like_7 Glycosyltra 92.0 0.66 1.4E-05 50.9 9.3 93 629-724 256-358 (367)
60 TIGR03088 stp2 sugar transfera 91.7 1.5 3.2E-05 48.7 11.7 94 628-724 263-360 (374)
61 KOG3607 Meltrins, fertilins an 91.5 0.73 1.6E-05 55.7 9.3 35 278-312 626-661 (716)
62 cd03809 GT1_mtfB_like This fam 91.3 0.46 1E-05 51.5 7.1 92 628-724 263-357 (365)
63 PF04863 EGF_alliinase: Alliin 91.2 0.11 2.3E-06 40.9 1.3 30 125-154 17-52 (56)
64 TIGR03449 mycothiol_MshA UDP-N 90.7 0.88 1.9E-05 51.1 8.8 94 628-724 293-389 (405)
65 PRK15427 colanic acid biosynth 90.1 1.2 2.6E-05 50.6 9.2 93 628-723 289-392 (406)
66 PF05686 Glyco_transf_90: Glyc 89.7 1.6 3.5E-05 49.5 9.7 145 565-723 154-303 (395)
67 PF13524 Glyco_trans_1_2: Glyc 89.6 0.72 1.6E-05 40.4 5.5 74 647-724 9-84 (92)
68 PF07645 EGF_CA: Calcium-bindi 89.4 0.29 6.4E-06 36.7 2.4 27 121-147 3-34 (42)
69 cd03795 GT1_like_4 This family 89.3 1.3 2.9E-05 48.1 8.6 91 629-721 255-350 (357)
70 TIGR03087 stp1 sugar transfera 89.2 1.3 2.9E-05 49.8 8.6 90 630-724 290-384 (397)
71 smart00179 EGF_CA Calcium-bind 89.2 0.37 7.9E-06 34.8 2.7 26 282-307 9-39 (39)
72 KOG3607 Meltrins, fertilins an 88.7 0.27 5.8E-06 59.3 2.6 34 120-154 625-658 (716)
73 cd03821 GT1_Bme6_like This fam 88.7 1.2 2.7E-05 47.9 7.7 91 629-724 273-367 (375)
74 cd00054 EGF_CA Calcium-binding 88.6 0.43 9.3E-06 33.9 2.7 26 282-307 9-38 (38)
75 KOG3512 Netrin, axonal chemotr 88.0 0.73 1.6E-05 51.5 5.2 59 95-153 366-429 (592)
76 cd03804 GT1_wbaZ_like This fam 87.6 1.1 2.3E-05 49.3 6.4 72 628-702 252-323 (351)
77 PF13692 Glyco_trans_1_4: Glyc 87.5 0.79 1.7E-05 42.7 4.6 68 629-701 62-131 (135)
78 cd03798 GT1_wlbH_like This fam 87.4 1.3 2.7E-05 47.6 6.8 94 628-724 269-364 (377)
79 PRK15484 lipopolysaccharide 1, 87.4 1.8 3.9E-05 48.6 8.2 93 629-724 268-365 (380)
80 PF12955 DUF3844: Domain of un 87.4 0.32 6.9E-06 43.9 1.7 37 281-322 12-70 (103)
81 PF01414 DSL: Delta serrate li 87.3 0.22 4.7E-06 41.1 0.5 37 114-151 21-63 (63)
82 cd00053 EGF Epidermal growth f 87.2 0.53 1.1E-05 32.9 2.5 26 282-307 6-36 (36)
83 cd00055 EGF_Lam Laminin-type e 87.1 0.47 1E-05 37.0 2.3 20 289-308 13-34 (50)
84 cd03816 GT1_ALG1_like This fam 87.0 4.5 9.7E-05 46.0 11.2 86 628-718 305-399 (415)
85 PHA02887 EGF-like protein; Pro 86.9 0.38 8.3E-06 43.8 1.9 25 284-309 94-124 (126)
86 TIGR02472 sucr_P_syn_N sucrose 86.8 1.7 3.7E-05 49.9 7.7 92 630-724 329-428 (439)
87 cd03807 GT1_WbnK_like This fam 86.8 2 4.3E-05 46.2 7.8 91 628-723 259-353 (365)
88 PRK10307 putative glycosyl tra 86.2 1.4 3.1E-05 49.7 6.7 94 628-724 294-395 (412)
89 cd04951 GT1_WbdM_like This fam 86.1 2.4 5.3E-05 46.0 8.2 91 629-724 254-348 (360)
90 cd03802 GT1_AviGT4_like This f 86.1 2 4.4E-05 46.3 7.5 69 629-702 235-305 (335)
91 PF00053 Laminin_EGF: Laminin 85.9 0.46 1E-05 36.8 1.7 20 289-308 12-33 (49)
92 PF12955 DUF3844: Domain of un 85.3 0.66 1.4E-05 41.9 2.6 31 124-154 12-62 (103)
93 PF04863 EGF_alliinase: Alliin 85.0 0.45 9.8E-06 37.5 1.2 29 282-310 17-53 (56)
94 cd03792 GT1_Trehalose_phosphor 84.6 3.5 7.7E-05 45.8 8.7 91 629-724 265-359 (372)
95 cd04949 GT1_gtfA_like This fam 84.4 2.8 6.1E-05 46.3 7.8 94 629-724 270-366 (372)
96 TIGR02149 glgA_Coryne glycogen 83.8 3.4 7.4E-05 45.9 8.1 94 628-724 271-374 (388)
97 cd03805 GT1_ALG2_like This fam 83.7 3.8 8.3E-05 45.5 8.5 92 629-724 291-386 (392)
98 cd03806 GT1_ALG11_like This fa 82.1 5 0.00011 45.8 8.7 92 628-723 315-413 (419)
99 PF12947 EGF_3: EGF domain; I 81.4 0.91 2E-05 33.0 1.5 26 125-150 6-33 (36)
100 cd03817 GT1_UGDG_like This fam 80.9 7 0.00015 42.0 9.1 91 628-722 269-362 (374)
101 smart00180 EGF_Lam Laminin-typ 80.7 1.7 3.7E-05 33.3 2.9 16 257-273 17-32 (46)
102 smart00181 EGF Epidermal growt 80.3 1.4 3.1E-05 31.0 2.3 25 282-307 6-35 (35)
103 cd03811 GT1_WabH_like This fam 79.5 7.1 0.00015 41.4 8.4 90 629-721 255-351 (353)
104 cd03799 GT1_amsK_like This is 79.4 7.9 0.00017 41.9 8.9 93 628-723 246-348 (355)
105 cd03813 GT1_like_3 This family 79.3 6.2 0.00014 45.8 8.4 91 628-721 361-460 (475)
106 cd04946 GT1_AmsK_like This fam 78.5 6.8 0.00015 44.4 8.3 91 629-722 300-397 (407)
107 smart00672 CAP10 Putative lipo 78.0 21 0.00046 38.0 11.2 144 564-722 79-233 (256)
108 PRK09922 UDP-D-galactose:(gluc 77.8 3.9 8.5E-05 45.3 5.9 91 630-722 250-345 (359)
109 TIGR02468 sucrsPsyn_pln sucros 76.7 6.7 0.00015 49.5 7.9 83 639-724 574-658 (1050)
110 cd03825 GT1_wcfI_like This fam 74.9 15 0.00032 40.0 9.4 87 629-718 256-345 (365)
111 PF01683 EB: EB module; Inter 74.7 2.7 6E-05 32.9 2.6 30 267-302 17-46 (52)
112 PHA03099 epidermal growth fact 74.0 2.3 5.1E-05 39.5 2.3 30 125-155 51-84 (139)
113 PHA03099 epidermal growth fact 73.7 2 4.3E-05 40.0 1.7 24 287-310 55-84 (139)
114 cd04955 GT1_like_6 This family 73.2 12 0.00025 40.8 8.1 90 629-724 259-352 (363)
115 PF09064 Tme5_EGF_like: Thromb 71.7 2.9 6.2E-05 29.8 1.8 21 175-195 6-27 (34)
116 PHA01633 putative glycosyl tra 71.3 11 0.00025 41.6 7.4 48 629-679 215-263 (335)
117 PF06247 Plasmod_Pvs28: Plasmo 70.4 1.3 2.9E-05 44.0 -0.1 138 127-305 8-163 (197)
118 PLN02949 transferase, transfer 68.3 16 0.00035 42.4 8.1 92 629-723 346-443 (463)
119 PF09064 Tme5_EGF_like: Thromb 67.8 4.5 9.7E-05 28.9 2.0 25 118-147 3-27 (34)
120 PRK15490 Vi polysaccharide bio 67.0 55 0.0012 38.8 12.0 64 629-695 464-528 (578)
121 PHA01630 putative group 1 glyc 65.8 19 0.00042 39.7 7.8 40 629-669 201-241 (331)
122 cd03793 GT1_Glycogen_synthase_ 65.1 15 0.00033 43.4 7.0 95 629-724 466-574 (590)
123 PRK14099 glycogen synthase; Pr 64.8 24 0.00051 41.2 8.7 92 629-724 360-466 (485)
124 PRK00654 glgA glycogen synthas 64.4 21 0.00045 41.3 8.1 90 630-723 349-449 (466)
125 TIGR02095 glgA glycogen/starch 64.3 18 0.00039 41.8 7.6 92 629-724 357-460 (473)
126 cd03796 GT1_PIG-A_like This fa 64.1 16 0.00035 41.1 6.9 92 628-724 260-355 (398)
127 TIGR01133 murG undecaprenyldip 62.1 14 0.00031 40.3 5.9 83 630-716 243-334 (348)
128 PRK14098 glycogen synthase; Pr 61.6 50 0.0011 38.6 10.5 83 629-713 373-464 (489)
129 PF01683 EB: EB module; Inter 61.4 8.5 0.00018 30.1 2.9 25 121-147 20-46 (52)
130 KOG3514 Neurexin III-alpha [Si 55.4 6.7 0.00015 48.2 1.9 35 120-154 623-661 (1591)
131 PF07645 EGF_CA: Calcium-bindi 52.0 7.6 0.00017 29.0 1.1 21 282-302 10-34 (42)
132 PF12947 EGF_3: EGF domain; I 48.9 9.5 0.00021 27.7 1.1 23 283-305 7-33 (36)
133 cd04950 GT1_like_1 Glycosyltra 48.7 22 0.00048 39.7 4.7 66 629-701 265-336 (373)
134 PLN00142 sucrose synthase 48.1 52 0.0011 40.8 7.9 91 631-724 659-758 (815)
135 KOG1388 Attractin and platelet 48.1 12 0.00026 38.2 2.1 74 126-205 53-131 (217)
136 PF00954 S_locus_glycop: S-loc 47.6 16 0.00034 33.4 2.7 28 121-148 78-108 (110)
137 KOG3516 Neurexin IV [Signal tr 45.3 14 0.00029 46.4 2.4 35 120-155 545-584 (1306)
138 KOG0196 Tyrosine kinase, EPH ( 45.0 45 0.00098 40.7 6.4 63 127-196 248-318 (996)
139 TIGR02918 accessory Sec system 43.7 65 0.0014 37.8 7.7 93 630-724 385-487 (500)
140 PLN02939 transferase, transfer 43.7 81 0.0018 39.7 8.6 89 632-724 851-954 (977)
141 cd03788 GT1_TPS Trehalose-6-Ph 43.2 38 0.00082 39.2 5.6 90 627-721 350-446 (460)
142 KOG1387 Glycosyltransferase [C 42.3 85 0.0018 34.8 7.5 90 629-721 348-443 (465)
143 cd03791 GT1_Glycogen_synthase_ 42.3 61 0.0013 37.2 7.2 85 629-715 362-457 (476)
144 PRK13608 diacylglycerol glucos 38.6 75 0.0016 35.8 7.0 85 629-721 265-356 (391)
145 PLN02605 monogalactosyldiacylg 38.5 87 0.0019 35.0 7.5 79 629-716 274-361 (382)
146 KOG3514 Neurexin III-alpha [Si 38.5 19 0.00042 44.5 2.2 41 271-311 617-663 (1591)
147 COG0438 RfaG Glycosyltransfera 37.7 76 0.0016 32.9 6.5 41 629-670 268-309 (381)
148 TIGR02470 sucr_synth sucrose s 36.9 1.1E+02 0.0023 38.1 8.1 91 631-724 636-735 (784)
149 PRK00726 murG undecaprenyldiph 36.3 47 0.001 36.5 4.8 86 629-718 244-339 (357)
150 PF12662 cEGF: Complement Clr- 35.7 24 0.00053 23.3 1.4 9 139-147 3-11 (24)
151 TIGR02400 trehalose_OtsA alpha 33.6 1.4E+02 0.0029 34.7 8.1 84 628-717 346-437 (456)
152 PRK15179 Vi polysaccharide bio 32.1 2.9E+02 0.0063 33.9 10.8 90 630-724 584-681 (694)
153 PRK10125 putative glycosyl tra 32.0 1.8E+02 0.0039 33.0 8.7 67 628-698 297-364 (405)
154 cd03785 GT1_MurG MurG is an N- 30.4 1.2E+02 0.0025 33.1 6.6 86 629-719 244-340 (350)
155 KOG3516 Neurexin IV [Signal tr 25.5 42 0.0009 42.4 2.1 33 279-311 548-585 (1306)
156 cd03812 GT1_CapH_like This fam 25.3 1.8E+02 0.0039 31.3 7.0 71 628-702 257-328 (358)
157 PRK05749 3-deoxy-D-manno-octul 24.2 96 0.0021 35.1 4.7 88 629-720 311-405 (425)
158 PF15024 Glyco_transf_18: Glyc 21.8 1.9E+02 0.004 34.3 6.3 90 627-720 331-455 (559)
159 KOG3509 Basement membrane-spec 20.9 3.3E+02 0.0071 34.5 8.4 37 118-154 404-443 (964)
160 PF00919 UPF0004: Uncharacteri 20.5 96 0.0021 27.9 2.9 30 393-423 13-43 (98)
No 1
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=100.00 E-value=7.7e-52 Score=448.00 Aligned_cols=298 Identities=36% Similarity=0.638 Sum_probs=220.7
Q ss_pred cCCCeEEEecCChhhhHHhhhcccccccccccccCCCCcccccccchhhHHHHHHHhhcCCcccCCcCCccEEEEeccce
Q 003853 348 KKRPLLYVYDLPPEFNSLLLEGRHYKLECVNRIYNEKNETLWTDMLYGSQMAFYESILASPHRTLNGEEADFFFVPVLDS 427 (791)
Q Consensus 348 ~~~p~IYVYdLP~~fn~~ll~~~~~~~~c~~~~~~~~~~~~w~~~~y~~e~~~~e~l~~s~~rT~dP~eAd~FyVP~~~~ 427 (791)
.+++||||||||++||.+++.... ........+.+|++|.+||++|++|++||.||+|||+||||+|.+
T Consensus 2 ~~~lkVYVY~lp~~~~~~~~~~~~-----------~~~~~~~~~~~~~~e~~l~~~l~~s~~~T~dp~eAdlF~vP~~~~ 70 (302)
T PF03016_consen 2 HRGLKVYVYPLPPKFNKDLLDPRE-----------DEQCSWYETSQYALEVILHEALLNSPFRTDDPEEADLFFVPFYSS 70 (302)
T ss_pred CCCCEEEEEeCCccccccceeccc-----------cccCCCcccccchHHHHHHHHHHhCCcEeCCHHHCeEEEEEcccc
Confidence 467899999999999999883211 112222345689999999999999999999999999999999998
Q ss_pred eeeeecCCCCCccccccccccchhhHHHHHHHHHHHHhhCccccccCCCCeEEEeccCCCCCCCchh--cccceeeeccc
Q 003853 428 CIITRADDAPHLSAQEHRGLRSSLTLEFYKKAYEHIIEHYPYWNRTSGRDHIWFFSWDEGACYAPKE--IWNSMMLVHWG 505 (791)
Q Consensus 428 ~~~~~~~~~p~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~PyWnRs~GrDH~~~~~~D~g~~~~~~~--~~~s~~l~~~g 505 (791)
+........+ ......+.+..++.++.+++|||||++|+||||++++|+|.|..... +.+..+
T Consensus 71 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~p~w~r~~G~dH~~~~~~~~g~~~~~~~~~~~~~~~----- 135 (302)
T PF03016_consen 71 CYFHHWWGSP----------NSGADRDSLSDALRHLLASYPYWNRSGGRDHFFVNSHDRGGCSFDRNPRLMNNSI----- 135 (302)
T ss_pred cccccccCCc----------cchhhHHHHHHHHHHHHhcCchhhccCCCCeEEEeccccccccccccHhhhccch-----
Confidence 8741111110 11122344556677777899999999999999999999988874321 111111
Q ss_pred CCcccccccccccccCCccccCCCCCCCCCcccCCCceeecCcccCCchhhcccccCCCccCCceEEEeecCCCCCCCCC
Q 003853 506 NTNSKHNHSTTAYWADNWDRISSSRRGNHSCFDPEKDLVLPAWKAPDAFVLRSKLWASPREKRKTLFYFNGNLGSAYPNG 585 (791)
Q Consensus 506 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~f~p~kDvviP~~~~~~~~~~~~~l~~~~~~~R~~L~~F~G~~~~~~~~~ 585 (791)
.++.... .....+|+|++||++|++...............+..+|++|++|+|+....
T Consensus 136 ----------~~~~~~~--------~~~~~~~~~~~Di~~P~~~~~~~~~~~~~~~~~~~~~R~~l~~f~g~~~~~---- 193 (302)
T PF03016_consen 136 ----------RAVVAFS--------SFSSSCFRPGFDIVIPPFVPPSSLPDWRPWPQRPPARRPYLLFFAGTIRPS---- 193 (302)
T ss_pred ----------hheeccC--------CCCcCcccCCCCeeccccccccccCCccccccCCccCCceEEEEeeecccc----
Confidence 1110000 012457999999999998766543322222334678999999999997531
Q ss_pred CCCCCcchhHHHHHHHHhcCCCCCccccCcccCcceEEecCCchhHHHhhccCeEEEeCCCCCC-chhHHHHHhhCCeeE
Q 003853 586 RPESSYSMGVRQKLAEEYGSSPNKEGKLGKQHAEDVIVTSLRSENYHEDLSSSVFCGVLPGDGW-SGRMEDSILQGCIPV 664 (791)
Q Consensus 586 ~~~~~ys~~iR~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~l~~S~FCl~p~G~~~-s~R~~dal~~GCIPV 664 (791)
...|++++|+.|++.+++.++.....+ ........+|.+.|++|+|||+|+|++. +.||+|||++|||||
T Consensus 194 --~~~~~~~~r~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPV 264 (302)
T PF03016_consen 194 --SNDYSGGVRQRLLDECKSDPDFRCSDG-------SETCPSPSEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPV 264 (302)
T ss_pred --ccccchhhhhHHHHhcccCCcceeeec-------ccccccchHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeE
Confidence 111678999999999977654321110 0112345679999999999999999985 899999999999999
Q ss_pred EEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC
Q 003853 665 VIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL 702 (791)
Q Consensus 665 ii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i 702 (791)
||+|+++|||+++|||++|||+|+++++++|++||++|
T Consensus 265 ii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~~i 302 (302)
T PF03016_consen 265 IISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILRSI 302 (302)
T ss_pred EecCcccCCcccccCHHHEEEEECHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999987
No 2
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=100.00 E-value=5.1e-48 Score=438.70 Aligned_cols=331 Identities=31% Similarity=0.462 Sum_probs=244.1
Q ss_pred CCCeEEEecCChhhhHHhhhcccccc--------ccccc---------ccCCC-----Ccccc-cccchhhHHHHHHHh-
Q 003853 349 KRPLLYVYDLPPEFNSLLLEGRHYKL--------ECVNR---------IYNEK-----NETLW-TDMLYGSQMAFYESI- 404 (791)
Q Consensus 349 ~~p~IYVYdLP~~fn~~ll~~~~~~~--------~c~~~---------~~~~~-----~~~~w-~~~~y~~e~~~~e~l- 404 (791)
..-.||||+||+.|+..+++.+.... +|... .++.+ ....| .+++|+.|..||.++
T Consensus 71 ~~~~v~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~E~~~~~~~~ 150 (464)
T KOG1021|consen 71 AGASVYVYNLPSGFDVSLLLFHKQIPTSPNNKKFMCSYKLNEKRGKVYVYHEGNKPLFHTPSWCLTDQYASEGIFHNRML 150 (464)
T ss_pred cCcceeeeccchhhhhhhhccCccccccCcchhhhhhhhhhcccCceEEecCCCCccccCCCcccccchhHHHHHHHHHh
Confidence 34579999999999999998653321 33321 11112 11234 457999999999999
Q ss_pred -hcCCcccCCcCCccEEEEeccceeeeeecCCCCCccccccccccchhhHHHHHHHHHHHHhhCccccccCCCCeEEEec
Q 003853 405 -LASPHRTLNGEEADFFFVPVLDSCIITRADDAPHLSAQEHRGLRSSLTLEFYKKAYEHIIEHYPYWNRTSGRDHIWFFS 483 (791)
Q Consensus 405 -~~s~~rT~dP~eAd~FyVP~~~~~~~~~~~~~p~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~PyWnRs~GrDH~~~~~ 483 (791)
..+++||.||+|||+||||||+++++.++...|.-. . +. ...+++++.+..+.+++|||||++|+||||+++
T Consensus 151 ~~~~~~Rt~dp~~Ad~f~vPf~~~~~~~~~~~~~~~~--~----~~-~~~~~~~~~i~~~~~~~p~W~Rs~G~DH~~v~~ 223 (464)
T KOG1021|consen 151 RRESAFRTLDPLEADAFYVPFYASLDYNRALLWPDER--V----NA-ILRSILQDYIVALLSKQPYWNRSSGRDHFFVAC 223 (464)
T ss_pred cccCceecCChhhCcEEEEcceeeEehhhhcccCCcc--c----ch-HHHHHHHHHHHHHHhcCchhhccCCCceEEEeC
Confidence 588999999999999999999999987765554311 0 11 112334444555578999999999999999999
Q ss_pred cCCCCCCCchhcccceeee--cccCCcccccccccccccCCccccCCCCCCCCCcccCC-CceeecCcccCCchhhc--c
Q 003853 484 WDEGACYAPKEIWNSMMLV--HWGNTNSKHNHSTTAYWADNWDRISSSRRGNHSCFDPE-KDLVLPAWKAPDAFVLR--S 558 (791)
Q Consensus 484 ~D~g~~~~~~~~~~s~~l~--~~g~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~f~p~-kDvviP~~~~~~~~~~~--~ 558 (791)
+|++....... ++++++. .+++. ++ -...|.+. +|++||++...++.... +
T Consensus 224 ~~~~~~~~~~~-~~~~~~~i~~~~n~-------------a~----------ls~~~~~~~~dv~iP~~~~~~~~~~~~~~ 279 (464)
T KOG1021|consen 224 HDWGDFRRRSD-WGASISLIPEFCNG-------------AL----------LSLEFFPWNKDVAIPYPTIPHPLSPPENS 279 (464)
T ss_pred Ccchheeeccc-hhhHHHHHHhhCCc-------------ce----------eecccccCCCcccCCCccCcCccCccccc
Confidence 99887664322 2222211 22211 00 01236677 99999999777665432 1
Q ss_pred cccCCCccCCceEEEeecCCCCCCCCCCCCCCcchhHHHHHHHHhcCCCCCccccCcccCcceEEecCCchhHHHhhccC
Q 003853 559 KLWASPREKRKTLFYFNGNLGSAYPNGRPESSYSMGVRQKLAEEYGSSPNKEGKLGKQHAEDVIVTSLRSENYHEDLSSS 638 (791)
Q Consensus 559 ~l~~~~~~~R~~L~~F~G~~~~~~~~~~~~~~ys~~iR~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~l~~S 638 (791)
.....+..+|++|+||+|+. .++.||+.|+++|++.++......+. +....+.+...|.+.|++|
T Consensus 280 ~~~~~~~~~R~~L~~F~G~~------------~~~~iR~~L~~~~~~~~~~~~~~~~~---~g~~~~~~~~~y~~~m~~S 344 (464)
T KOG1021|consen 280 WQGGVPFSNRPILAFFAGAP------------AGGQIRSILLDLWKKDPDTEVFVNCP---RGKVSCDRPLNYMEGMQDS 344 (464)
T ss_pred cccCCCCCCCceEEEEeccc------------cCCcHHHHHHHHhhcCcCccccccCC---CCccccCCcchHHHHhhcC
Confidence 23344568999999999983 15779999999998733332221111 1112245678999999999
Q ss_pred eEEEeCCCCCC-chhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhH-HHHHhcCCHHHHHHHHHHHHH
Q 003853 639 VFCGVLPGDGW-SGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNL-INILRGLNETEIQFRLANVQK 716 (791)
Q Consensus 639 ~FCl~p~G~~~-s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l-~~~L~~i~~~~~~~m~~~~~~ 716 (791)
+|||+|+|+++ |+|+||||.+|||||||+|++++||++++||++|||+|++++++++ .++|.+|+.+++.+||+++.+
T Consensus 345 ~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~~~~iL~~i~~~~~~~m~~~v~~ 424 (464)
T KOG1021|consen 345 KFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPELIKNILLSIPEEEVLRMRENVIR 424 (464)
T ss_pred eEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999986 8999999999999999999999999999999999999999999988 999999999999999999996
Q ss_pred -HHHhheecc
Q 003853 717 -VWQRFLYRD 725 (791)
Q Consensus 717 -~~~~~~~~~ 725 (791)
+.++|.+..
T Consensus 425 ~v~r~~~~~~ 434 (464)
T KOG1021|consen 425 LVPRHFLKKP 434 (464)
T ss_pred HHHhhEEeCC
Confidence 667776653
No 3
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=99.90 E-value=4.7e-23 Score=223.20 Aligned_cols=270 Identities=19% Similarity=0.254 Sum_probs=174.6
Q ss_pred HHHHHHhhcCCcccCCcCCccEEEEeccceeeeeecCCCCCccccccccccchhhHHHHHHHHHHHHhhCccccccCCCC
Q 003853 398 MAFYESILASPHRTLNGEEADFFFVPVLDSCIITRADDAPHLSAQEHRGLRSSLTLEFYKKAYEHIIEHYPYWNRTSGRD 477 (791)
Q Consensus 398 ~~~~e~l~~s~~rT~dP~eAd~FyVP~~~~~~~~~~~~~p~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~PyWnRs~GrD 477 (791)
..|.+.+....+.|+||+.|++.++-+- . ...| ..++ ..++ +.| =.+|||. +.|++
T Consensus 218 ~~fq~t~~~n~~~ve~pd~ACiyi~lvg-e------~q~P-------~~l~---p~el-----ekl-yslp~w~-~dg~N 273 (907)
T KOG2264|consen 218 QVFQETIPNNVYLVETPDKACIYIHLVG-E------IQSP-------VVLT---PAEL-----EKL-YSLPHWR-TDGFN 273 (907)
T ss_pred HHHHHhcccceeEeeCCCccEEEEEEec-c------ccCC-------CcCC---hHhh-----hhh-hcCcccc-CCCcc
Confidence 3678888888999999999999886541 0 1111 1122 1222 223 2679995 68999
Q ss_pred eEEEeccCCCCCCCchhcccceeeecccCCcccccccccccccCCccccCCCCCCCCCcccCCCceeecCcccCCchhhc
Q 003853 478 HIWFFSWDEGACYAPKEIWNSMMLVHWGNTNSKHNHSTTAYWADNWDRISSSRRGNHSCFDPEKDLVLPAWKAPDAFVLR 557 (791)
Q Consensus 478 H~~~~~~D~g~~~~~~~~~~s~~l~~~g~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~f~p~kDvviP~~~~~~~~~~~ 557 (791)
|++++-.-. .+ ..|...-+.-|++... . +.+ ....|||++|+++|+...+......
T Consensus 274 hvl~Nl~r~--s~----~~n~lyn~~t~raivv----Q-----ssf---------~~~q~RpgfDl~V~pv~h~~~e~~~ 329 (907)
T KOG2264|consen 274 HVLFNLGRP--SD----TQNLLYNFQTGRAIVV----Q-----SSF---------YTVQIRPGFDLPVDPVNHIAVEKNF 329 (907)
T ss_pred eEEEEccCc--cc----cccceeEeccCceEEE----e-----ecc---------eeeeeccCCCcccCcccccccCccc
Confidence 999964221 01 0111111111222110 0 000 0235999999999976654433322
Q ss_pred ccccCCCccCCceEEEeecCCCCCCCCCCCCCCcchhHHHHHHHHhcCCCCCc-c----------ccCc-ccC----cce
Q 003853 558 SKLWASPREKRKTLFYFNGNLGSAYPNGRPESSYSMGVRQKLAEEYGSSPNKE-G----------KLGK-QHA----EDV 621 (791)
Q Consensus 558 ~~l~~~~~~~R~~L~~F~G~~~~~~~~~~~~~~ys~~iR~~L~~~~~~~~~~~-~----------~~g~-~~~----~~~ 621 (791)
..+...-+.+|++|+.|+|++.+. +.. -...+.-..++. ..+... . ...+ +.. +++
T Consensus 330 ~e~~p~vP~~RkyL~t~qgki~~~----~ss---Ln~~~aF~~e~~-adp~~~a~qds~i~qv~c~~t~k~Qe~~SLpew 401 (907)
T KOG2264|consen 330 VELTPLVPFQRKYLITLQGKIESD----NSS---LNEFSAFSEELS-ADPSRRAVQDSPIVQVKCSFTCKNQENCSLPEW 401 (907)
T ss_pred eecCcccchhhheeEEEEeeeccc----ccc---cchhhhhHHHhc-cCCcccccccCceEEEEEeeccccCCCCCcchh
Confidence 334344578999999999988541 100 112333222222 222111 0 0000 000 111
Q ss_pred EEecCCchhHHHhhccCeEEEe-CCCCCC--c----hhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhh
Q 003853 622 IVTSLRSENYHEDLSSSVFCGV-LPGDGW--S----GRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPN 694 (791)
Q Consensus 622 ~~~~~~~~~y~~~l~~S~FCl~-p~G~~~--s----~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~ 694 (791)
. -|....+-.+++..|+|||+ |+||+- | .||+||++.||||||+++...|||+|.|||++.++++|.+.+.+
T Consensus 402 a-lcg~~~~RrqLlk~STF~lilpp~d~rv~S~~~~~r~~eaL~~GavPviLg~~~~LPyqd~idWrraal~lPkaR~tE 480 (907)
T KOG2264|consen 402 A-LCGERERRRQLLKSSTFCLILPPGDPRVISEMFFQRFLEALQLGAVPVILGNSQLLPYQDLIDWRRAALRLPKARLTE 480 (907)
T ss_pred h-hccchHHHHHHhccceeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEEeccccccchHHHHHHHHHhhhCCccccch
Confidence 0 03445577899999999986 778753 2 68999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhheec
Q 003853 695 LINILRGLNETEIQFRLANVQKVWQRFLYR 724 (791)
Q Consensus 695 l~~~L~~i~~~~~~~m~~~~~~~~~~~~~~ 724 (791)
++-+|+++...++.+||++++.+|++|+.+
T Consensus 481 ~HFllrs~~dsDll~mRRqGRl~wEtYls~ 510 (907)
T KOG2264|consen 481 AHFLLRSFEDSDLLEMRRQGRLFWETYLSD 510 (907)
T ss_pred HHHHHHhcchhhHHHHHhhhhhhHHHHhhH
Confidence 999999999999999999999999999654
No 4
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.71 E-value=5.5e-17 Score=176.38 Aligned_cols=292 Identities=16% Similarity=0.122 Sum_probs=194.6
Q ss_pred HHHHHhhcCCcccCCcCCccEEEEeccceeeeeecCCCCCccccccccccchhhHHHHHHHHHHHHhhCccccccCCCCe
Q 003853 399 AFYESILASPHRTLNGEEADFFFVPVLDSCIITRADDAPHLSAQEHRGLRSSLTLEFYKKAYEHIIEHYPYWNRTSGRDH 478 (791)
Q Consensus 399 ~~~e~l~~s~~rT~dP~eAd~FyVP~~~~~~~~~~~~~p~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~PyWnRs~GrDH 478 (791)
.+.|....|.+.|.|+.+|.+|. |-..-+. + ..++ .++ -..+.++.-.|.| |.+|
T Consensus 127 ~lleA~~~S~yyt~n~N~aclf~-Ps~d~ln--Q------------n~l~----~kl----~~~ala~l~~wdr--g~nH 181 (691)
T KOG1022|consen 127 ALLEAWHLSFYYTFNYNGACLFM-PSSDELN--Q------------NPLS----WKL----EKVALAKLLVWDR--GVNH 181 (691)
T ss_pred HHHHHHHhccceecCCCceEEEe-cchhhhc--c------------Ccch----HHH----HHHHHhcccchhc--ccce
Confidence 57788889999999999999987 7643321 1 0111 111 1223456678999 9999
Q ss_pred EEEeccCCCCCCCchhcccceeeecccCCcccccccccccccCCccccCCCCCCCCCcccCCCceeecCcccCCchhhcc
Q 003853 479 IWFFSWDEGACYAPKEIWNSMMLVHWGNTNSKHNHSTTAYWADNWDRISSSRRGNHSCFDPEKDLVLPAWKAPDAFVLRS 558 (791)
Q Consensus 479 ~~~~~~D~g~~~~~~~~~~s~~l~~~g~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~f~p~kDvviP~~~~~~~~~~~~ 558 (791)
+.++--.-|.-. ++..+ +-|+-+... + .-.-+.| .||++.||.||.|..... ..
T Consensus 182 ~~fnmLpGg~p~-----yntal--dv~~d~a~~--~--gggf~tW------------~yr~g~dv~ipv~Sp~~v---~~ 235 (691)
T KOG1022|consen 182 EGFNMLPGGDPT-----YNTAL--DVGQDEAWY--S--GGGFGTW------------KYRKGNDVYIPVRSPGNV---GR 235 (691)
T ss_pred eeEeeccCCCCC-----ccccc--cCCcceeEE--e--cCCcCcc------------cccCCCcccccccccccc---Cc
Confidence 988411111100 11110 111110000 0 0000112 389999999999875421 11
Q ss_pred cccCCCccCCceEEEeecCCCCCCCCCCCCCCcchhHHHHHHHHhcCCCCCccccCcccCcceEE--ec--CCchhHHHh
Q 003853 559 KLWASPREKRKTLFYFNGNLGSAYPNGRPESSYSMGVRQKLAEEYGSSPNKEGKLGKQHAEDVIV--TS--LRSENYHED 634 (791)
Q Consensus 559 ~l~~~~~~~R~~L~~F~G~~~~~~~~~~~~~~ys~~iR~~L~~~~~~~~~~~~~~g~~~~~~~~~--~~--~~~~~y~~~ 634 (791)
...-+..|.+++--.+ .+|+-.+|..|.++..........++.+-.-+... -+ ...-+|...
T Consensus 236 --~~~~~g~r~~~l~~~q------------~n~~pr~r~~l~el~~kh~e~~l~l~~c~nlsl~~r~~~qhH~~~~yp~~ 301 (691)
T KOG1022|consen 236 --AFLYDGSRYRVLQDCQ------------ENYGPRIRVSLIELLSKHEERELELPFCLNLSLNSRGVRQHHFDVKYPSS 301 (691)
T ss_pred --cccCCccceeeeeccc------------cccchHhHHhHHHHHhhccceEEecchhccccccccchhhcccccccccc
Confidence 1112344554433332 34667799999888755543332222211100000 01 223578999
Q ss_pred hccCeEEEeCCCCCC-chhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcCCHHHHHHHHHH
Q 003853 635 LSSSVFCGVLPGDGW-SGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGLNETEIQFRLAN 713 (791)
Q Consensus 635 l~~S~FCl~p~G~~~-s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i~~~~~~~m~~~ 713 (791)
+...+||+.-++.+. .+-+.+-+.++|||||+.|.+.|||++||||...||+++|..+.++.++|++|+...+-+||.|
T Consensus 302 l~~~~fc~~~R~~r~gq~~lv~~~~a~c~pvi~vd~y~lpf~~Vvdw~~aSv~~~e~~~~~v~~~l~~i~~~~i~sl~~r 381 (691)
T KOG1022|consen 302 LEFIGFCDGDRVTRGGQFHLVILGYASCAPVISVDIYLLPFLGVVDWIVASVWCMEYYAGKVMDALLNIETAGICSLQLR 381 (691)
T ss_pred cceeeeEeccccccCCccceehhhhcccceeeeeehhhhhhhhhhhceeeeEEeehhhHHHHHHHhhcchhcchhhhhhh
Confidence 999999998888665 4679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhheeccchhHHHhhhhcccCCCcchhhhhhcccchhhHHHHHHHHhhhccCCchH
Q 003853 714 VQKVWQRFLYRDSILLEAKRQNATFGRMNDWAVEFLKLREDDVFTTLIQILHYKLHNDPWR 774 (791)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~~~~~~~~~~~ 774 (791)
.+..+.++ |..+..+++.+++.+.+++++-+ .+.+++|| +.+
T Consensus 382 ~~~~rl~r----------------f~~~~~~~l~~~~~i~~~llp~v--~~s~~~w~-~~~ 423 (691)
T KOG1022|consen 382 RIGSRLNR----------------FPPFKRGFLLLLSSIGKRLLPVV--AISSRLWN-VGV 423 (691)
T ss_pred hhhhhHhh----------------cchHHHHHHHHHHHHhhhhhhee--eecccccc-ccc
Confidence 88766655 56666678888999999999999 99999999 444
No 5
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=99.62 E-value=1e-15 Score=172.49 Aligned_cols=122 Identities=33% Similarity=0.815 Sum_probs=101.7
Q ss_pred cCcccCCCCCCCCCCCCEEecCCCeeeeCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCCCCCCCCCCeeeeCCCc
Q 003853 115 VEMIGGKSCKSDCSGQGVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICPTHCDTTRAMCFCGEGT 194 (791)
Q Consensus 115 ~~~~~~~~C~~~Cs~~G~C~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~g~C~~~~g~C~C~~G~ 194 (791)
++.+....|+.+|+++|.|+ .|.|+|++||+|.+|++. .|.. .|++...+..|+|.|++||
T Consensus 244 g~~c~~~~C~~~c~~~g~c~--~G~CIC~~Gf~G~dC~e~---~Cp~--------------~cs~~g~~~~g~CiC~~g~ 304 (525)
T KOG1225|consen 244 GPLCSTIYCPGGCTGRGQCV--EGRCICPPGFTGDDCDEL---VCPV--------------DCSGGGVCVDGECICNPGY 304 (525)
T ss_pred CCccccccCCCCCcccceEe--CCeEeCCCCCcCCCCCcc---cCCc--------------ccCCCceecCCEeecCCCc
Confidence 44556678899999999999 899999999999999984 2442 3666666778899999999
Q ss_pred ccCCCCCCCcCCCcccCCCCCCCCCCCCCcccCcCcccCCCCCCCccccCCcchhhcccccccCccccCCCCCCCccccc
Q 003853 195 KYPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEV 274 (791)
Q Consensus 195 ~G~~c~~~~~C~~~~~~~~~~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~~~c~~g~C~C~~~G~~G~~Ce~ 274 (791)
+|..|.+.. | ..+|+++|.|. .++|.|. +||+|..|++
T Consensus 305 ~G~dCs~~~-c---------------------------padC~g~G~Ci-------------~G~C~C~-~Gy~G~~C~~ 342 (525)
T KOG1225|consen 305 SGKDCSIRR-C---------------------------PADCSGHGKCI-------------DGECLCD-EGYTGELCIQ 342 (525)
T ss_pred ccccccccc-C---------------------------CccCCCCCccc-------------CCceEeC-CCCcCCcccc
Confidence 988775432 2 46788999995 6899998 9999999997
Q ss_pred ccccCcCCCCCCCceecCCeeecCCCcccCC
Q 003853 275 PVSSTCVNQCSGHGHCRGGFCQCDSGWYGVD 305 (791)
Q Consensus 275 ~~~~~C~~~Cs~~G~C~~G~C~C~~G~~G~~ 305 (791)
. . |+++|.|++| |+|..||.|.+
T Consensus 343 ~------~-C~~~g~cv~g-C~C~~Gw~G~d 365 (525)
T KOG1225|consen 343 R------A-CSGGGQCVNG-CKCKKGWRGPD 365 (525)
T ss_pred c------c-cCCCceeccC-ceeccCccCCC
Confidence 5 3 9999999999 99999999999
No 6
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=99.47 E-value=1.2e-13 Score=155.77 Aligned_cols=170 Identities=26% Similarity=0.469 Sum_probs=121.6
Q ss_pred ccccCcccCCCCCCCCCCCCEEecCCCeeeeCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCCCCCCC--CCCeee
Q 003853 112 VDLVEMIGGKSCKSDCSGQGVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICPTHCDT--TRAMCF 189 (791)
Q Consensus 112 ~~~~~~~~~~~C~~~Cs~~G~C~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~g~C~~--~~g~C~ 189 (791)
.+.++.++...|++.|+.+|.|. .+.|.+..+++|..|... .|+.. .+....-..++..|.. ..+.|.
T Consensus 168 ~~~~~~~g~~~~~~~~~~hg~~~--~~~~l~~~~~s~~~~~~~---~~~~~-----~~~~~r~~~~~~~~~~~~~~~ic~ 237 (525)
T KOG1225|consen 168 NPFGAECGQYKCPNDGSGHGRYY--FGNCLSGISASGETCNQL---GCNDD-----CFRTGRCREGRCFCTAGFFDGICE 237 (525)
T ss_pred CccccccceecCCcCCCCCccce--ecccccccCcchhhhhcc---cCCcc-----ceeccccccCcccccccccCceee
Confidence 44556677788899999999998 899999999999999764 22221 0000000011122222 244899
Q ss_pred eCCCcccCCCCCCCcCCCc-ccCCCCC--CCCCCCCCcccCcCcc-cCCCCCCCccccCCcchhhcccccccCccccCCC
Q 003853 190 CGEGTKYPNRPVAEACGFQ-VNLPSQP--GAPKSTDWAKADLDNI-FTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYD 265 (791)
Q Consensus 190 C~~G~~G~~c~~~~~C~~~-~~~~~~~--~~~c~~gw~g~~c~~~-~~~~C~~~G~C~~~~~~~~~~~~c~~g~C~C~~~ 265 (791)
|..+|+|+.|. ...|... .....|. .+.|++||+|.+|+.. +...|++++.|. +++|+|+ +
T Consensus 238 c~~~~~g~~c~-~~~C~~~c~~~g~c~~G~CIC~~Gf~G~dC~e~~Cp~~cs~~g~~~-------------~g~CiC~-~ 302 (525)
T KOG1225|consen 238 CPEGYFGPLCS-TIYCPGGCTGRGQCVEGRCICPPGFTGDDCDELVCPVDCSGGGVCV-------------DGECICN-P 302 (525)
T ss_pred cCCceeCCccc-cccCCCCCcccceEeCCeEeCCCCCcCCCCCcccCCcccCCCceec-------------CCEeecC-C
Confidence 99999998875 2234221 1111222 3457999999999862 344577777764 7899999 9
Q ss_pred CCCCcccccccccCcCCCCCCCceecCCeeecCCCcccCCCCCc
Q 003853 266 GLLGQFCEVPVSSTCVNQCSGHGHCRGGFCQCDSGWYGVDCSIP 309 (791)
Q Consensus 266 G~~G~~Ce~~~~~~C~~~Cs~~G~C~~G~C~C~~G~~G~~C~~~ 309 (791)
||+|..|++. .|+.+|++||.|+.|.|+|.+||+|..|+.+
T Consensus 303 g~~G~dCs~~---~cpadC~g~G~Ci~G~C~C~~Gy~G~~C~~~ 343 (525)
T KOG1225|consen 303 GYSGKDCSIR---RCPADCSGHGKCIDGECLCDEGYTGELCIQR 343 (525)
T ss_pred Cccccccccc---cCCccCCCCCcccCCceEeCCCCcCCccccc
Confidence 9999999987 6999999999999999999999999999997
No 7
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=99.47 E-value=1.1e-13 Score=157.89 Aligned_cols=144 Identities=26% Similarity=0.508 Sum_probs=104.4
Q ss_pred CCCCCCCEEecCCCeeeeCCCCcCCCCCccccCCCCCCC-CCCCCCCCcccccCCCCCCCCCCeeeeCCCcc----cCCC
Q 003853 125 SDCSGQGVCNHELGQCRCFHGFRGKGCSERIHFQCNFPK-TPELPYGRWVVSICPTHCDTTRAMCFCGEGTK----YPNR 199 (791)
Q Consensus 125 ~~Cs~~G~C~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~-~~~~~~g~~~~~~C~g~C~~~~g~C~C~~G~~----G~~c 199 (791)
..|+++|+++ .|.|+|.+||.|..||-.. .+.... -.+.+-..-....|+|.++|..|+|.|.+... |+.|
T Consensus 467 ~~C~g~G~~~--CG~C~C~~G~~G~~CEC~~--~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CGqC~C~~~~~~~i~G~fC 542 (783)
T KOG1226|consen 467 ALCHGNGTFV--CGQCRCDEGWLGKKCECST--DELSSSEEEDKCRENSDSPVCSGRGDCVCGQCVCHKPDNGKIYGKFC 542 (783)
T ss_pred cccCCCCcEE--ecceecCCCCCCCcccCCc--cccCcHhHHhhccCCCCCCCcCCCCcEeCCceEecCCCCCceeeeee
Confidence 3599999999 9999999999999999642 121110 00011122222389999999999999998776 5555
Q ss_pred CCCCcCCCcccCCCCCCCCCCCCCcccCcCcccCCCCCCCccccCCcchhhcccccccCccccCCCCCCCccccccc-cc
Q 003853 200 PVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPV-SS 278 (791)
Q Consensus 200 ~~~~~C~~~~~~~~~~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~~~c~~g~C~C~~~G~~G~~Ce~~~-~~ 278 (791)
+-. +.+ |+...+..|+++|.|. -|+|.|. +||+|..|+.+. .+
T Consensus 543 ECD--------nfs--------------C~r~~g~lC~g~G~C~-------------CG~CvC~-~GwtG~~C~C~~std 586 (783)
T KOG1226|consen 543 ECD--------NFS--------------CERHKGVLCGGHGRCE-------------CGRCVCN-PGWTGSACNCPLSTD 586 (783)
T ss_pred ecc--------Ccc--------------cccccCcccCCCCeEe-------------CCcEEcC-CCCccCCCCCCCCCc
Confidence 211 111 1212255688899886 6899999 999999999763 35
Q ss_pred CcCC----CCCCCceecCCeeecCCC-cccCCCCC
Q 003853 279 TCVN----QCSGHGHCRGGFCQCDSG-WYGVDCSI 308 (791)
Q Consensus 279 ~C~~----~Cs~~G~C~~G~C~C~~G-~~G~~C~~ 308 (791)
.|.+ -|+|+|+|.-|.|+|... |+|..|+.
T Consensus 587 ~C~~~~G~iCSGrG~C~Cg~C~C~~~~~sG~~CE~ 621 (783)
T KOG1226|consen 587 TCESSDGQICSGRGTCECGRCKCTDPPYSGEFCEK 621 (783)
T ss_pred cccCCCCceeCCCceeeCCceEcCCCCcCcchhhc
Confidence 6653 499999999999999766 99999998
No 8
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=98.95 E-value=1.2e-09 Score=125.34 Aligned_cols=134 Identities=27% Similarity=0.512 Sum_probs=98.8
Q ss_pred CCCCCCEEecCCCeeeeCCCCc----CCCCCccccCCCCCCCCCCCCCCCcccccCCCCCCCCCCeeeeCCCcccCCCCC
Q 003853 126 DCSGQGVCNHELGQCRCFHGFR----GKGCSERIHFQCNFPKTPELPYGRWVVSICPTHCDTTRAMCFCGEGTKYPNRPV 201 (791)
Q Consensus 126 ~Cs~~G~C~~~~G~C~C~~G~~----G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~g~C~~~~g~C~C~~G~~G~~c~~ 201 (791)
.|||+|.|. .|+|.|.+... |+.||-. ...|.... +..|+|+..|..|.|.|.+||+|..|.-
T Consensus 515 vCSgrG~C~--CGqC~C~~~~~~~i~G~fCECD-nfsC~r~~----------g~lC~g~G~C~CG~CvC~~GwtG~~C~C 581 (783)
T KOG1226|consen 515 VCSGRGDCV--CGQCVCHKPDNGKIYGKFCECD-NFSCERHK----------GVLCGGHGRCECGRCVCNPGWTGSACNC 581 (783)
T ss_pred CcCCCCcEe--CCceEecCCCCCceeeeeeecc-Cccccccc----------CcccCCCCeEeCCcEEcCCCCccCCCCC
Confidence 699999999 99999999887 9999964 34454322 2479988888899999999999987732
Q ss_pred CCcCCCcccCCCCCCCCCCCCCcccCcCcccCCCCCCCccccCCcchhhcccccccCccccCCCCCCCcccccccccCcC
Q 003853 202 AEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPVSSTCV 281 (791)
Q Consensus 202 ~~~C~~~~~~~~~~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~~~c~~g~C~C~~~G~~G~~Ce~~~~~~C~ 281 (791)
. .....| ....+..|+++|.|. -|+|.|..++|.|.+||.. ..|+
T Consensus 582 ~------~std~C--------------~~~~G~iCSGrG~C~-------------Cg~C~C~~~~~sG~~CE~c--ptc~ 626 (783)
T KOG1226|consen 582 P------LSTDTC--------------ESSDGQICSGRGTCE-------------CGRCKCTDPPYSGEFCEKC--PTCP 626 (783)
T ss_pred C------CCCccc--------------cCCCCceeCCCceee-------------CCceEcCCCCcCcchhhcC--CCCC
Confidence 1 222222 222345677888885 6899998445999999975 5888
Q ss_pred CCCCCCceec-CCeeecCCCcccCCCCCc
Q 003853 282 NQCSGHGHCR-GGFCQCDSGWYGVDCSIP 309 (791)
Q Consensus 282 ~~Cs~~G~C~-~G~C~C~~G~~G~~C~~~ 309 (791)
..|..+..|+ -+. +..|+.|..|.+.
T Consensus 627 ~~C~~~~~CveC~~--~~~g~~~~~C~~~ 653 (783)
T KOG1226|consen 627 DPCAENKSCVECQA--FETGPVGDTCVEE 653 (783)
T ss_pred Ccccccccchhhcc--cccccccchHHHH
Confidence 8899998885 333 3446888887764
No 9
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=98.91 E-value=1.3e-09 Score=133.46 Aligned_cols=107 Identities=27% Similarity=0.663 Sum_probs=82.1
Q ss_pred CCC-CCCCCCCCEEecCCC---eeeeCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCCCCCCCCCCeeeeCCCccc
Q 003853 121 KSC-KSDCSGQGVCNHELG---QCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICPTHCDTTRAMCFCGEGTKY 196 (791)
Q Consensus 121 ~~C-~~~Cs~~G~C~~~~G---~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~g~C~~~~g~C~C~~G~~G 196 (791)
..| .++|+++|+|+...+ .|.|++-|.|.+||..+ .+|
T Consensus 3865 d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~-epC------------------------------------- 3906 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDL-EPC------------------------------------- 3906 (4289)
T ss_pred cccccCcccCCCEecCCCCCceEEeCcccccCccccccc-ccc-------------------------------------
Confidence 567 678999999976433 79999999999998741 111
Q ss_pred CCCCCCCcCCCcccCCCCCCCCCCCCCcccCcCcccCCCCCCCccccCCcchhhcccccccCccccCCCCCCCccccccc
Q 003853 197 PNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPV 276 (791)
Q Consensus 197 ~~c~~~~~C~~~~~~~~~~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~~~c~~g~C~C~~~G~~G~~Ce~~~ 276 (791)
..++|..+|+|....+ .+.|.|+ .||+|..||...
T Consensus 3907 -----------------------------------~snPC~~GgtCip~~n---------~f~CnC~-~gyTG~~Ce~~G 3941 (4289)
T KOG1219|consen 3907 -----------------------------------ASNPCLTGGTCIPFYN---------GFLCNCP-NGYTGKRCEARG 3941 (4289)
T ss_pred -----------------------------------cCCCCCCCCEEEecCC---------CeeEeCC-CCccCceeeccc
Confidence 1456778888876543 5789999 999999999874
Q ss_pred ccCcC-CCCCCCceec--CC--eeecCCCcccCCCCCcc
Q 003853 277 SSTCV-NQCSGHGHCR--GG--FCQCDSGWYGVDCSIPS 310 (791)
Q Consensus 277 ~~~C~-~~Cs~~G~C~--~G--~C~C~~G~~G~~C~~~~ 310 (791)
...|. +.|.++|.|+ .| .|.|.+|+.|..|...+
T Consensus 3942 i~eCs~n~C~~gg~C~n~~gsf~CncT~g~~gr~c~~~~ 3980 (4289)
T KOG1219|consen 3942 ISECSKNVCGTGGQCINIPGSFHCNCTPGILGRTCCAEK 3980 (4289)
T ss_pred ccccccccccCCceeeccCCceEeccChhHhcccCcccc
Confidence 44565 7899999997 45 89999999999996543
No 10
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.77 E-value=2.9e-08 Score=116.46 Aligned_cols=199 Identities=24% Similarity=0.459 Sum_probs=114.1
Q ss_pred CCCceeeccCCCcccccccCcccCCCC-CCCCCCC--------CEEecCCC----eeeeCCCCcCCCCCccccCCCCCCC
Q 003853 97 EIGRWLSGCDSVAKEVDLVEMIGGKSC-KSDCSGQ--------GVCNHELG----QCRCFHGFRGKGCSERIHFQCNFPK 163 (791)
Q Consensus 97 ~~g~~~~~~~~~~~~~~~~~~~~~~~C-~~~Cs~~--------G~C~~~~G----~C~C~~G~~G~~Ce~~~~~~C~~~~ 163 (791)
+.|..|..|..+..+.+... .+..| |-+|-.+ -.|..++- .|.|.+||+|..|+. |..+.
T Consensus 882 T~G~~CdrCl~GyyGdP~lg--~g~~CrPCpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~RCe~-----CA~~~ 954 (1758)
T KOG0994|consen 882 TTGHSCDRCLDGYYGDPRLG--SGIGCRPCPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGSRCEI-----CADNH 954 (1758)
T ss_pred ccccchhhhhccccCCcccC--CCCCCCCCCCCCCCccchhccccccccccccceeeecccCccccchhh-----hcccc
Confidence 46777777766555433221 12334 3344321 25643332 699999999999997 76542
Q ss_pred --CCCCCCCCcccccCC--------CCCCCCCCeee-------------eCCCcccC----CCCCCCcC------CCccc
Q 003853 164 --TPELPYGRWVVSICP--------THCDTTRAMCF-------------CGEGTKYP----NRPVAEAC------GFQVN 210 (791)
Q Consensus 164 --~~~~~~g~~~~~~C~--------g~C~~~~g~C~-------------C~~G~~G~----~c~~~~~C------~~~~~ 210 (791)
.|.. .|.|....|+ +.||-.+|.|. |..||.|. +|..+ .| +.+.+
T Consensus 955 fGnP~~-GGtCq~CeC~~NiD~~d~~aCD~~TG~CLkCL~hTeG~hCe~Ck~Gf~GdA~~q~CqrC-~Cn~LGTn~~~~C 1032 (1758)
T KOG0994|consen 955 FGNPSE-GGTCQKCECSNNIDLYDPGACDVATGACLKCLYHTEGDHCEHCKDGFYGDALRQNCQRC-VCNFLGTNSTCHC 1032 (1758)
T ss_pred cCCccc-CCccccccccCCcCccCCCccchhhchhhhhhhcccccchhhccccchhHHHHhhhhhh-eccccccCCcccc
Confidence 2222 4566666664 56777777553 66777764 22111 01 01222
Q ss_pred CCCCCCCCCCCCCcccCcCcccCCCC---CCCc--cccCCcchhhccccc--ccCccccCCCCCCCcccccccc------
Q 003853 211 LPSQPGAPKSTDWAKADLDNIFTTNG---SKPG--WCNVDPEEAYALKVQ--FKEECDCKYDGLLGQFCEVPVS------ 277 (791)
Q Consensus 211 ~~~~~~~~c~~gw~g~~c~~~~~~~C---~~~G--~C~~~~~~~~~~~~c--~~g~C~C~~~G~~G~~Ce~~~~------ 277 (791)
......|+|.++-.|..||.+..+.- ++.| .|+.++. .+-.| .+|+|.|. +||.|..|+..-+
T Consensus 1033 Dr~tGQCpClpNv~G~~CDqCA~N~w~laSG~GCe~C~Cd~~---~~pqCN~ftGQCqCk-pGfGGR~C~qCqel~WGdP 1108 (1758)
T KOG0994|consen 1033 DRFTGQCPCLPNVQGVRCDQCAENHWNLASGEGCEPCNCDPI---GGPQCNEFTGQCQCK-PGFGGRTCSQCQELYWGDP 1108 (1758)
T ss_pred ccccCcCCCCcccccccccccccchhccccCCCCCccCCCcc---CCccccccccceecc-CCCCCcchhHHHHhhcCCC
Confidence 33444567888888888875432210 1111 1332221 00111 47899999 9999999986421
Q ss_pred -cCcC-CCCCCCc----eec--CCeeecCCCcccCCCCC
Q 003853 278 -STCV-NQCSGHG----HCR--GGFCQCDSGWYGVDCSI 308 (791)
Q Consensus 278 -~~C~-~~Cs~~G----~C~--~G~C~C~~G~~G~~C~~ 308 (791)
..|. -.|..+| +|+ +|.|.|.+|-.|..|..
T Consensus 1109 ~~~C~aCdCd~rG~~tpQCdr~tG~C~C~~Gv~G~rCdq 1147 (1758)
T KOG0994|consen 1109 NEKCRACDCDPRGIETPQCDRATGRCVCRPGVGGPRCDQ 1147 (1758)
T ss_pred CCCceecCCCCCCCCCCCccccCCceeecCCCCCcchhh
Confidence 1222 2455555 376 89999999999999987
No 11
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=98.68 E-value=1e-08 Score=121.86 Aligned_cols=71 Identities=27% Similarity=0.766 Sum_probs=55.2
Q ss_pred ccCCCCCCCccccCCcchhhcccccccCccccCCCCCCCcccccccc-cCc-CCCCCCCceec----CC-eeecCCC-cc
Q 003853 231 IFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPVS-STC-VNQCSGHGHCR----GG-FCQCDSG-WY 302 (791)
Q Consensus 231 ~~~~~C~~~G~C~~~~~~~~~~~~c~~g~C~C~~~G~~G~~Ce~~~~-~~C-~~~Cs~~G~C~----~G-~C~C~~G-~~ 302 (791)
|+..+|+++|.|....+ .++|+|. +||+|.+||.... ..| +..|.++|+|+ .| .|+|+.| |.
T Consensus 1242 CYs~pC~nng~C~srEg---------gYtCeCr-pg~tGehCEvs~~agrCvpGvC~nggtC~~~~nggf~c~Cp~ge~e 1311 (2531)
T KOG4289|consen 1242 CYSGPCGNNGRCRSREG---------GYTCECR-PGFTGEHCEVSARAGRCVPGVCKNGGTCVNLLNGGFCCHCPYGEFE 1311 (2531)
T ss_pred hhcCCCCCCCceEEecC---------ceeEEec-CCccccceeeecccCccccceecCCCEEeecCCCceeccCCCcccC
Confidence 34667899999976543 6899998 9999999998753 244 56799999997 33 7899886 67
Q ss_pred cCCCCCccc
Q 003853 303 GVDCSIPSV 311 (791)
Q Consensus 303 G~~C~~~~~ 311 (791)
++.|+....
T Consensus 1312 ~prC~v~tr 1320 (2531)
T KOG4289|consen 1312 DPRCEVTTR 1320 (2531)
T ss_pred CCceEEEee
Confidence 889997543
No 12
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.55 E-value=2.4e-07 Score=108.99 Aligned_cols=52 Identities=33% Similarity=0.807 Sum_probs=38.1
Q ss_pred ccCccccCCCCCCCcccccccc--------cCcC-CCC--CCCceec--CCeeecCCCcccCCCCC
Q 003853 256 FKEECDCKYDGLLGQFCEVPVS--------STCV-NQC--SGHGHCR--GGFCQCDSGWYGVDCSI 308 (791)
Q Consensus 256 ~~g~C~C~~~G~~G~~Ce~~~~--------~~C~-~~C--s~~G~C~--~G~C~C~~G~~G~~C~~ 308 (791)
.+|+|.|. +...|..|+...+ ..|. -+| .++-+|. +|.|+|.|||-|..|++
T Consensus 1035 ~tGQCpCl-pNv~G~~CDqCA~N~w~laSG~GCe~C~Cd~~~~pqCN~ftGQCqCkpGfGGR~C~q 1099 (1758)
T KOG0994|consen 1035 FTGQCPCL-PNVQGVRCDQCAENHWNLASGEGCEPCNCDPIGGPQCNEFTGQCQCKPGFGGRTCSQ 1099 (1758)
T ss_pred ccCcCCCC-cccccccccccccchhccccCCCCCccCCCccCCccccccccceeccCCCCCcchhH
Confidence 37899998 9999999986431 1111 122 3445686 89999999999999987
No 13
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=98.22 E-value=2.7e-06 Score=102.12 Aligned_cols=72 Identities=26% Similarity=0.607 Sum_probs=50.5
Q ss_pred CCC-CCCCCCCCEEecCCC----eeeeCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCC------CCCCCCCCeee
Q 003853 121 KSC-KSDCSGQGVCNHELG----QCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICP------THCDTTRAMCF 189 (791)
Q Consensus 121 ~~C-~~~Cs~~G~C~~~~G----~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~------g~C~~~~g~C~ 189 (791)
..| -++|.+.|+|....| +|+|++||+|++||.....+|..+= +.+..|....|. ..|+-..|+|.
T Consensus 1717 ~vC~lnpc~~~g~Cv~sp~a~GY~C~C~~g~~G~~Ce~~~dq~CPrGW---WG~P~CgpC~CavsKgfdp~CnKt~G~Cq 1793 (2531)
T KOG4289|consen 1717 DVCSLNPCENQGTCVRSPGAHGYTCECPPGYTGPYCELRADQPCPRGW---WGFPTCGPCNCAVSKGFDPDCNKTNGQCQ 1793 (2531)
T ss_pred chhcccccccCceeecCCCCCceeEECCCcccCcchhhhccCCCCCcc---cCCCCccCccccccCCCCCCccccCccee
Confidence 444 468999999987665 7999999999999999888887531 011233333342 34666788999
Q ss_pred eCCCcc
Q 003853 190 CGEGTK 195 (791)
Q Consensus 190 C~~G~~ 195 (791)
|.+.+.
T Consensus 1794 CKe~hy 1799 (2531)
T KOG4289|consen 1794 CKENHY 1799 (2531)
T ss_pred eccccc
Confidence 987654
No 14
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=98.14 E-value=1.4e-05 Score=102.07 Aligned_cols=103 Identities=19% Similarity=0.346 Sum_probs=74.4
Q ss_pred ccCCCceeeccCCCcccccccCcccCCCCCCCCCCC-CEEecCCCeeeeCCCCcCCCCCccccCCCCCCCCCCC---CCC
Q 003853 95 KAEIGRWLSGCDSVAKEVDLVEMIGGKSCKSDCSGQ-GVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKTPEL---PYG 170 (791)
Q Consensus 95 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~C~~~Cs~~-G~C~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~---~~g 170 (791)
.+..|+.++.|....+...-...-...-|+-+|+++ ..|...+|.|.|.+.-.|..|+. |.++..... .++
T Consensus 701 ~g~tG~~Ce~C~~gfrr~~~~~~~~~~c~~C~cngh~~~Cd~~tG~C~C~~~t~G~~C~~-----C~~GfYg~~~~~~~~ 775 (1705)
T KOG1836|consen 701 VGYTGQFCESCAPGFRRLSPQLGPFCPCIPCDCNGHSNICDPRTGQCKCKHNTFGGQCAQ-----CVDGFYGLPDLGTSG 775 (1705)
T ss_pred CCcccchhhhcchhhhcccccCCCCCcccccccCCccccccCCCCceecccCCCCCchhh-----hcCCCCCccccCCCC
Confidence 456899999997776654433222234458889997 89999999999999999999997 887765543 334
Q ss_pred CcccccCCCC------CCCCCCeee-eCCCcccCCCCCC
Q 003853 171 RWVVSICPTH------CDTTRAMCF-CGEGTKYPNRPVA 202 (791)
Q Consensus 171 ~~~~~~C~g~------C~~~~g~C~-C~~G~~G~~c~~~ 202 (791)
+|....|++. ++...+.|. |++||+|..|+.+
T Consensus 776 dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c 814 (1705)
T KOG1836|consen 776 DCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEEC 814 (1705)
T ss_pred CCccCCCCCChhhcCcCcccceecCCCCCCCcccccccC
Confidence 4666667633 333456898 9999999988543
No 15
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=98.12 E-value=1.8e-06 Score=107.09 Aligned_cols=72 Identities=25% Similarity=0.613 Sum_probs=61.9
Q ss_pred cccCCCCCCCccccCCcchhhcccccccCccccCCCCCCCcccccccccCcCCCCCCCceec----CCeeecCCCcccCC
Q 003853 230 NIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPVSSTCVNQCSGHGHCR----GGFCQCDSGWYGVD 305 (791)
Q Consensus 230 ~~~~~~C~~~G~C~~~~~~~~~~~~c~~g~C~C~~~G~~G~~Ce~~~~~~C~~~Cs~~G~C~----~G~C~C~~G~~G~~ 305 (791)
.|..++|+++|.|...+.. .++|.|+ .-|+|..||+..+.|-+++|..+|+|+ +..|.|+.||+|..
T Consensus 3866 ~C~~npCqhgG~C~~~~~g--------gy~CkCp-sqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~ 3936 (4289)
T KOG1219|consen 3866 PCNDNPCQHGGTCISQPKG--------GYKCKCP-SQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKR 3936 (4289)
T ss_pred ccccCcccCCCEecCCCCC--------ceEEeCc-ccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCce
Confidence 3446889999999876542 5699999 999999999998888899999999998 34899999999999
Q ss_pred CCCcc
Q 003853 306 CSIPS 310 (791)
Q Consensus 306 C~~~~ 310 (791)
|+...
T Consensus 3937 Ce~~G 3941 (4289)
T KOG1219|consen 3937 CEARG 3941 (4289)
T ss_pred eeccc
Confidence 99873
No 16
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=98.00 E-value=6.2e-06 Score=58.12 Aligned_cols=27 Identities=41% Similarity=1.058 Sum_probs=24.8
Q ss_pred CCCCCCCEEecCCCeeeeCCCCcCCCC
Q 003853 125 SDCSGQGVCNHELGQCRCFHGFRGKGC 151 (791)
Q Consensus 125 ~~Cs~~G~C~~~~G~C~C~~G~~G~~C 151 (791)
..|++||+|+..+|+|.|++||+|++|
T Consensus 6 ~~C~~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 6 NICSGHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred CccCCCCEEeCCCCEEECCCCCcCCCC
Confidence 469999999987799999999999988
No 17
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=97.65 E-value=0.00031 Score=90.15 Aligned_cols=195 Identities=22% Similarity=0.440 Sum_probs=106.6
Q ss_pred cCCCceeeccCCCcccccccCcccCCCC-CCCCCCCCEEec----CCCeee-eCCCCcCCCCCccccCCCCCC-----CC
Q 003853 96 AEIGRWLSGCDSVAKEVDLVEMIGGKSC-KSDCSGQGVCNH----ELGQCR-CFHGFRGKGCSERIHFQCNFP-----KT 164 (791)
Q Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~~~~~C-~~~Cs~~G~C~~----~~G~C~-C~~G~~G~~Ce~~~~~~C~~~-----~~ 164 (791)
.+-|.-+++|..+.......... .+| +-+|-+.|.|.. ..+.|. |++||+|..|+. |..+ ..
T Consensus 752 ~t~G~~C~~C~~GfYg~~~~~~~--~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~-----c~dgyfg~p~~ 824 (1705)
T KOG1836|consen 752 NTFGGQCAQCVDGFYGLPDLGTS--GDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEE-----CADGYFGNPLG 824 (1705)
T ss_pred CCCCCchhhhcCCCCCccccCCC--CCCccCCCCCChhhcCcCcccceecCCCCCCCccccccc-----CCCccccCCCC
Confidence 34667777776665554433222 226 566777777743 346899 999999999997 5543 12
Q ss_pred CCCCCCCcccccCC--------CCCCCCCCee-eeCCCcccCCCCCCC--------------cC---CCcc---------
Q 003853 165 PELPYGRWVVSICP--------THCDTTRAMC-FCGEGTKYPNRPVAE--------------AC---GFQV--------- 209 (791)
Q Consensus 165 ~~~~~g~~~~~~C~--------g~C~~~~g~C-~C~~G~~G~~c~~~~--------------~C---~~~~--------- 209 (791)
.++....+....|. +.|+-..|.| .|-....|..|+.+. .| +...
T Consensus 825 ~~~~~~~c~~c~c~~n~dp~~~g~c~~~tg~c~~ci~nT~g~~cd~c~~g~~gd~l~~~p~~~c~~c~c~p~gs~~~~~~ 904 (1705)
T KOG1836|consen 825 HDGDVRPCQSCQCNFNVDPNAFGNCNRLTGECLKCIHNTAGEYCDLCKEGYFGDPLAPNPEDKCFACGCVPAGSELPSLT 904 (1705)
T ss_pred CCCCcccCccceeccccCccccccccccccceeeccCCcccccccccccCccccccCCCcCCccccccCccCCccccccc
Confidence 22222334444453 5677777888 465555555442211 11 1000
Q ss_pred cCCCCCCCCCCCCCcccCcCccc-------------CCCCCCCc----cccCCcchhhcccccccCccccCCCCCCCccc
Q 003853 210 NLPSQPGAPKSTDWAKADLDNIF-------------TTNGSKPG----WCNVDPEEAYALKVQFKEECDCKYDGLLGQFC 272 (791)
Q Consensus 210 ~~~~~~~~~c~~gw~g~~c~~~~-------------~~~C~~~G----~C~~~~~~~~~~~~c~~g~C~C~~~G~~G~~C 272 (791)
+.+....+.|.+.-.|..|..+. ..+|...| .|.. .+|+|.|. +|.+|..|
T Consensus 905 c~~~tGQcec~~~v~g~~c~~c~~g~fnl~s~~gC~~c~c~~~gs~~~~c~~-----------~tGqc~c~-~gVtgqrc 972 (1705)
T KOG1836|consen 905 CNPVTGQCECKPNVEGRDCLYCFKGFFNLNSGVGCEPCNCDPTGSESSDCDV-----------GTGQCYCR-PGVTGQRC 972 (1705)
T ss_pred CCCcccceeccCCCCccccccccccccccCCCCCcccccccccccccccccc-----------cCCceeee-cCcccccc
Confidence 11111122233333344333211 11222222 1221 26899998 99999999
Q ss_pred cccc-------ccCcC-CCCCCCc----eec--CCeeecCCCcccCCCCCc
Q 003853 273 EVPV-------SSTCV-NQCSGHG----HCR--GGFCQCDSGWYGVDCSIP 309 (791)
Q Consensus 273 e~~~-------~~~C~-~~Cs~~G----~C~--~G~C~C~~G~~G~~C~~~ 309 (791)
+... ...|. -.|...| .|+ +|.|.|.+|+.|..|..-
T Consensus 973 ~qc~~~~~~~~~~gc~~c~c~~~Gs~~~qc~~~~G~c~c~~~~~g~~c~~c 1023 (1705)
T KOG1836|consen 973 DQCETYHFGFQTEGCGLCECDPLGSRGFQCDPEDGQCPCRPGFEGRRCDQC 1023 (1705)
T ss_pred CccccCcccccccCCcceecccCCcccceecccCCeeeecCCCCCcccccc
Confidence 8642 01111 1355556 586 799999999999887763
No 18
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=97.63 E-value=0.0004 Score=79.52 Aligned_cols=65 Identities=29% Similarity=0.717 Sum_probs=47.2
Q ss_pred CCCCccccCCcchhhcccccccCccccCCCCCCCccc-ccccccCc-----CCCCCCCceec------CCeeecCCCccc
Q 003853 236 GSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFC-EVPVSSTC-----VNQCSGHGHCR------GGFCQCDSGWYG 303 (791)
Q Consensus 236 C~~~G~C~~~~~~~~~~~~c~~g~C~C~~~G~~G~~C-e~~~~~~C-----~~~Cs~~G~C~------~G~C~C~~G~~G 303 (791)
|.+++.|...+. .+.|.|+ +||+|..| +......| ...|.++++|. ...|.|..||.|
T Consensus 280 c~~~~~C~~~~~---------~~~C~C~-~g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g 349 (487)
T KOG1217|consen 280 CPNGGTCVNVPG---------SYRCTCP-PGFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTG 349 (487)
T ss_pred cCCCCeeecCCC---------cceeeCC-CCCCCCCCccccccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCC
Confidence 777788865432 3789999 99999998 22112344 34588888883 225999999999
Q ss_pred CCCCCcc
Q 003853 304 VDCSIPS 310 (791)
Q Consensus 304 ~~C~~~~ 310 (791)
..|+...
T Consensus 350 ~~C~~~~ 356 (487)
T KOG1217|consen 350 RRCEDSN 356 (487)
T ss_pred CccccCC
Confidence 9999874
No 19
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=9.8e-05 Score=75.75 Aligned_cols=131 Identities=19% Similarity=0.339 Sum_probs=72.1
Q ss_pred eCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCCCCCCCC-------CCeeeeCCCcccCCCCCCC-----------
Q 003853 142 CFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICPTHCDTT-------RAMCFCGEGTKYPNRPVAE----------- 203 (791)
Q Consensus 142 C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~g~C~~~-------~g~C~C~~G~~G~~c~~~~----------- 203 (791)
||+|..|++|.. |..+. ...|.|+..|. .|.|.|.+||.|+.|..+.
T Consensus 132 Cp~gtyGpdCl~-----Cpggs----------er~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~ 196 (350)
T KOG4260|consen 132 CPDGTYGPDCLQ-----CPGGS----------ERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQ 196 (350)
T ss_pred cCCCCcCCcccc-----CCCCC----------cCCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccc
Confidence 899999999986 54321 12354433332 5799999999999873211
Q ss_pred ---------cCCCcccCCCCC-CCCCCCCCccc--CcCccc-----CCCCCCCccccCCcchhhcccccccCccccCCCC
Q 003853 204 ---------ACGFQVNLPSQP-GAPKSTDWAKA--DLDNIF-----TTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDG 266 (791)
Q Consensus 204 ---------~C~~~~~~~~~~-~~~c~~gw~g~--~c~~~~-----~~~C~~~G~C~~~~~~~~~~~~c~~g~C~C~~~G 266 (791)
.|....+..... ...|+.||.-. .|-++. +.+|..+-.|.+..+ .++|.+. +|
T Consensus 197 ~lvCt~Ch~~C~~~Csg~~~k~C~kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteG---------Sf~C~dk-~G 266 (350)
T KOG4260|consen 197 HLVCTACHEGCLGVCSGESSKGCSKCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEG---------SFKCEDK-EG 266 (350)
T ss_pred cchhhhhhhhhhcccCCCCCCChhhhcccceecccccccHHHHhcCCCCCChhheeecCCC---------ceEeccc-cc
Confidence 122111111111 12367888543 221111 345555566654332 4689998 99
Q ss_pred CCCc--ccccccccCcCCCCC-CCceec----CCeeecCCCcc
Q 003853 267 LLGQ--FCEVPVSSTCVNQCS-GHGHCR----GGFCQCDSGWY 302 (791)
Q Consensus 267 ~~G~--~Ce~~~~~~C~~~Cs-~~G~C~----~G~C~C~~G~~ 302 (791)
|.+. .|+ .|...|. .++.|. ..+|+|..|..
T Consensus 267 y~~g~d~C~-----~~~d~~~~kn~~c~ni~~~~r~v~f~~~~ 304 (350)
T KOG4260|consen 267 YKKGVDECQ-----FCADVCASKNRPCMNIDGQYRCVCFSGLI 304 (350)
T ss_pred ccCChHHhh-----hhhhhcccCCCCcccCCccEEEEecccce
Confidence 9872 232 3334443 345564 34788877653
No 20
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=97.55 E-value=6.2e-05 Score=53.08 Aligned_cols=25 Identities=64% Similarity=1.379 Sum_probs=23.1
Q ss_pred CCCCCCceec--CCeeecCCCcccCCC
Q 003853 282 NQCSGHGHCR--GGFCQCDSGWYGVDC 306 (791)
Q Consensus 282 ~~Cs~~G~C~--~G~C~C~~G~~G~~C 306 (791)
..|++||+|+ .|.|+|.+||+|.+|
T Consensus 6 ~~C~~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 6 NICSGHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred CccCCCCEEeCCCCEEECCCCCcCCCC
Confidence 4699999999 799999999999987
No 21
>KOG3512 consensus Netrin, axonal chemotropic factor [Signal transduction mechanisms]
Probab=97.35 E-value=0.0012 Score=72.66 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=41.0
Q ss_pred cCccccCCCCCCCccccccc-------c--cCc-------CCCCCCCceecCCeeecCCCcccCCCCCccccc
Q 003853 257 KEECDCKYDGLLGQFCEVPV-------S--STC-------VNQCSGHGHCRGGFCQCDSGWYGVDCSIPSVMS 313 (791)
Q Consensus 257 ~g~C~C~~~G~~G~~Ce~~~-------~--~~C-------~~~Cs~~G~C~~G~C~C~~G~~G~~C~~~~~~~ 313 (791)
+|+|.|+ +|.+|..|+... . ..| +..|+++++=.+--|.|+.++.|..|+++....
T Consensus 413 tGqCpCk-eGvtG~tCnrCa~gyqqsrs~vapcik~p~~~~~~~~s~ve~qd~~s~Ck~~~~~~r~n~kkfc~ 484 (592)
T KOG3512|consen 413 TGQCPCK-EGVTGLTCNRCAPGYQQSRSPVAPCIKIPTDAPTLGSSGVEPQDQCSKCKASPGGKRLNQKKFCK 484 (592)
T ss_pred CCcccCC-CCCcccccccccchhhcccCCCcCceecCCCCccccCCCCcchhccccCCCCCcceeccccccCc
Confidence 7899999 999999998542 0 112 123666666335578999999999999987764
No 22
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.12 E-value=0.0012 Score=76.76 Aligned_cols=146 Identities=21% Similarity=0.526 Sum_probs=81.3
Q ss_pred CCCCCCCEEecCCC---eeeeCCCCcCC--CCCccccCCCCCCCCCCCCCCCcccccCC--CCCCCCCC--eeeeCCCcc
Q 003853 125 SDCSGQGVCNHELG---QCRCFHGFRGK--GCSERIHFQCNFPKTPELPYGRWVVSICP--THCDTTRA--MCFCGEGTK 195 (791)
Q Consensus 125 ~~Cs~~G~C~~~~G---~C~C~~G~~G~--~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~--g~C~~~~g--~C~C~~G~~ 195 (791)
..|..+..|...+| +|.|..||.|+ +|... .+|.... .+|. ..|....+ +|.|..||.
T Consensus 700 h~cdt~a~C~pg~~~~~tcecs~g~~gdgr~c~d~--~eca~~~-----------~~CGp~s~Cin~pg~~rceC~~gy~ 766 (1289)
T KOG1214|consen 700 HMCDTTARCHPGTGVDYTCECSSGYQGDGRNCVDE--NECATGF-----------HRCGPNSVCINLPGSYRCECRSGYE 766 (1289)
T ss_pred cccCCCccccCCCCcceEEEEeeccCCCCCCCCCh--hhhccCC-----------CCCCCCceeecCCCceeEEEeecce
Confidence 34666777875444 79999999765 56654 3555321 2454 34555544 788877764
Q ss_pred cCCCCCCCcCCCcccCCCCCCCCCCCCCcccCcCcccCCCCCCCccccCCcchhhcccccccCccccCCCCCCCc--ccc
Q 003853 196 YPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQ--FCE 273 (791)
Q Consensus 196 G~~c~~~~~C~~~~~~~~~~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~~~c~~g~C~C~~~G~~G~--~Ce 273 (791)
.-+- .-.|-. ..+.-+ -..|++ ...+|...|.|.... +| -..+.|.|. +||.|+ .|.
T Consensus 767 F~dd--~~tCV~--i~~pap---------~n~Ce~-g~h~C~i~g~a~c~~-----hG-gs~y~C~CL-PGfsGDG~~c~ 825 (1289)
T KOG1214|consen 767 FADD--RHTCVL--ITPPAP---------ANPCED-GSHTCAIAGQARCVH-----HG-GSTYSCACL-PGFSGDGHQCT 825 (1289)
T ss_pred eccC--CcceEE--ecCCCC---------CCcccc-CccccCcCCceEEEe-----cC-CceEEEeec-CCccCCccccc
Confidence 3210 011210 000000 011221 124566556553210 00 125799998 999975 444
Q ss_pred cccccCcCCCCCCCceec----CCeeecCCCcccCC
Q 003853 274 VPVSSTCVNQCSGHGHCR----GGFCQCDSGWYGVD 305 (791)
Q Consensus 274 ~~~~~~C~~~Cs~~G~C~----~G~C~C~~G~~G~~ 305 (791)
.. +++-++.|....+|. ...|+|.+||+|..
T Consensus 826 dv-DeC~psrChp~A~CyntpgsfsC~C~pGy~GDG 860 (1289)
T KOG1214|consen 826 DV-DECSPSRCHPAATCYNTPGSFSCRCQPGYYGDG 860 (1289)
T ss_pred cc-cccCccccCCCceEecCCCcceeecccCccCCC
Confidence 32 333367899999997 34899999999964
No 23
>smart00051 DSL delta serrate ligand.
Probab=96.98 E-value=0.00066 Score=55.85 Aligned_cols=45 Identities=27% Similarity=0.602 Sum_probs=36.6
Q ss_pred ccccCCCCCCCcccccccccCcCCCCCCCceec-CCeeecCCCcccCCC
Q 003853 259 ECDCKYDGLLGQFCEVPVSSTCVNQCSGHGHCR-GGFCQCDSGWYGVDC 306 (791)
Q Consensus 259 ~C~C~~~G~~G~~Ce~~~~~~C~~~Cs~~G~C~-~G~C~C~~G~~G~~C 306 (791)
.-.|. ++|.|..|+.. ..+.+.+.+|..|+ .|.|.|.+||+|++|
T Consensus 18 rv~C~-~~~yG~~C~~~--C~~~~d~~~~~~Cd~~G~~~C~~Gw~G~~C 63 (63)
T smart00051 18 RVTCD-ENYYGEGCNKF--CRPRDDFFGHYTCDENGNKGCLEGWMGPYC 63 (63)
T ss_pred EeeCC-CCCcCCccCCE--eCcCccccCCccCCcCCCEecCCCCcCCCC
Confidence 45788 89999999862 22234688999997 889999999999988
No 24
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=96.91 E-value=0.0074 Score=69.09 Aligned_cols=150 Identities=23% Similarity=0.503 Sum_probs=93.7
Q ss_pred CCCCCEEecC-----CCeeeeCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCC--CCCCCCC--CeeeeCCCcccC
Q 003853 127 CSGQGVCNHE-----LGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICP--THCDTTR--AMCFCGEGTKYP 197 (791)
Q Consensus 127 Cs~~G~C~~~-----~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~--g~C~~~~--g~C~C~~G~~G~ 197 (791)
|...+.|... .-.|.|..||.|..|+.. ...|.... ..|. +.|.... ..|.|.+||.+.
T Consensus 136 ~~~~~~c~~~~~~~~~~~c~C~~g~~~~~~~~~-~~~C~~~~-----------~~c~~~~~C~~~~~~~~C~c~~~~~~~ 203 (487)
T KOG1217|consen 136 CCIDGSCSNGPGSVGPFRCSCTEGYEGEPCETD-LDECIQYS-----------SPCQNGGTCVNTGGSYLCSCPPGYTGS 203 (487)
T ss_pred eeCchhhcCCCCCCCceeeeeCCCccccccccc-ccccccCC-----------CCcCCCcccccCCCCeeEeCCCCccCC
Confidence 4567777643 236999999999999974 13454221 1233 3344443 479999999998
Q ss_pred CCCCC---CcCCCcccCCCCCCCCCCCCCcccCcCcccCCCCCCC-ccccCCcchhhcccccccCccccCCCCCCCccc-
Q 003853 198 NRPVA---EACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKP-GWCNVDPEEAYALKVQFKEECDCKYDGLLGQFC- 272 (791)
Q Consensus 198 ~c~~~---~~C~~~~~~~~~~~~~c~~gw~g~~c~~~~~~~C~~~-G~C~~~~~~~~~~~~c~~g~C~C~~~G~~G~~C- 272 (791)
.|... ..|... ..+.+..++.+..|+.. ...|... |.|..... ..+|.|+ +||++..|
T Consensus 204 ~~~~~~~~~~c~~~------~~~~~~~g~~~~~c~~~-~~~~~~~~~~c~~~~~---------~~~C~~~-~g~~~~~~~ 266 (487)
T KOG1217|consen 204 TCETTGNGGTCVDS------VACSCPPGARGPECEVS-IVECASGDGTCVNTVG---------SYTCRCP-EGYTGDACV 266 (487)
T ss_pred cCcCCCCCceEecc------eeccCCCCCCCCCcccc-cccccCCCCcccccCC---------ceeeeCC-CCccccccc
Confidence 87543 112100 12345566666666521 1223322 77765432 3689998 99999984
Q ss_pred -ccccccCcCC--CCCCCceecC----CeeecCCCcccCCC
Q 003853 273 -EVPVSSTCVN--QCSGHGHCRG----GFCQCDSGWYGVDC 306 (791)
Q Consensus 273 -e~~~~~~C~~--~Cs~~G~C~~----G~C~C~~G~~G~~C 306 (791)
... ...|.. .|.++|+|.. ..|.|++||.|..|
T Consensus 267 ~~~~-~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~ 306 (487)
T KOG1217|consen 267 TCVD-VDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLC 306 (487)
T ss_pred eeee-ccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCC
Confidence 111 123432 3899999972 58999999999999
No 25
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=96.74 E-value=0.0063 Score=71.09 Aligned_cols=105 Identities=21% Similarity=0.473 Sum_probs=64.8
Q ss_pred CCCCCCCCCCCEEecCCC--eeeeCCCC--cCC--CCCccc----cCCCCCCCCCCCCCCCcccccCC--CCCCCC----
Q 003853 121 KSCKSDCSGQGVCNHELG--QCRCFHGF--RGK--GCSERI----HFQCNFPKTPELPYGRWVVSICP--THCDTT---- 184 (791)
Q Consensus 121 ~~C~~~Cs~~G~C~~~~G--~C~C~~G~--~G~--~Ce~~~----~~~C~~~~~~~~~~g~~~~~~C~--g~C~~~---- 184 (791)
.+|+..|.-+.+|++..| +|+|..|| .|+ +|-... ..+|..+. ..|. +.|.|.
T Consensus 738 a~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~-----------h~C~i~g~a~c~~hGg 806 (1289)
T KOG1214|consen 738 ATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGS-----------HTCAIAGQARCVHHGG 806 (1289)
T ss_pred ccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCc-----------cccCcCCceEEEecCC
Confidence 455788999999998888 57777665 444 564432 22344321 2453 444443
Q ss_pred -CCeeeeCCCcccCCCCCCCcCCCcccCCCCCCCCCCCCCcccCcCcccCCCCCCCccccCCcchhhcccccccCccccC
Q 003853 185 -RAMCFCGEGTKYPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCK 263 (791)
Q Consensus 185 -~g~C~C~~G~~G~~c~~~~~C~~~~~~~~~~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~~~c~~g~C~C~ 263 (791)
...|.|-+||.|.+= .| | +-|.+..+-|.....|..+++ ...|.|.
T Consensus 807 s~y~C~CLPGfsGDG~----~c--------~------------dvDeC~psrChp~A~Cyntpg---------sfsC~C~ 853 (1289)
T KOG1214|consen 807 STYSCACLPGFSGDGH----QC--------T------------DVDECSPSRCHPAATCYNTPG---------SFSCRCQ 853 (1289)
T ss_pred ceEEEeecCCccCCcc----cc--------c------------cccccCccccCCCceEecCCC---------cceeecc
Confidence 338999999987531 11 0 011222566778888877654 5789998
Q ss_pred CCCCCCc
Q 003853 264 YDGLLGQ 270 (791)
Q Consensus 264 ~~G~~G~ 270 (791)
+||.|+
T Consensus 854 -pGy~GD 859 (1289)
T KOG1214|consen 854 -PGYYGD 859 (1289)
T ss_pred -cCccCC
Confidence 999875
No 26
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=96.64 E-value=0.0013 Score=46.49 Aligned_cols=27 Identities=33% Similarity=0.832 Sum_probs=22.8
Q ss_pred CCCCCCCCEEecCC-C--eeeeCCCCcCCC
Q 003853 124 KSDCSGQGVCNHEL-G--QCRCFHGFRGKG 150 (791)
Q Consensus 124 ~~~Cs~~G~C~~~~-G--~C~C~~G~~G~~ 150 (791)
+++|.++|+|.... + .|.|++||+|+.
T Consensus 3 ~~~C~n~g~C~~~~~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 3 SNPCQNGGTCIDLPGGGYTCECPPGYTGKR 32 (32)
T ss_dssp TTSSTTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred CCcCCCCeEEEeCCCCCEEeECCCCCccCC
Confidence 56899999998755 4 799999999974
No 27
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=96.33 E-value=0.0058 Score=67.95 Aligned_cols=145 Identities=17% Similarity=0.201 Sum_probs=68.1
Q ss_pred cccCCCceeecCcccCCchhhcc--cccCCCccCCceEEEeecCCCCCCCCCCCCCCcchhHHHHHHHHhcCCCCCcccc
Q 003853 536 CFDPEKDLVLPAWKAPDAFVLRS--KLWASPREKRKTLFYFNGNLGSAYPNGRPESSYSMGVRQKLAEEYGSSPNKEGKL 613 (791)
Q Consensus 536 ~f~p~kDvviP~~~~~~~~~~~~--~l~~~~~~~R~~L~~F~G~~~~~~~~~~~~~~ys~~iR~~L~~~~~~~~~~~~~~ 613 (791)
+||...||.+|............ .+......+++..++++.+.. ....|..+++.+...-.+ ...
T Consensus 141 TYr~dSDi~~py~~~~~~~~~~~~~~~~~~~~~K~~~~~w~~Snc~------------~~~~R~~~~~~L~~~~~v-d~y 207 (349)
T PF00852_consen 141 TYRRDSDIPLPYGYFSPRESPSEKDDLPNILKKKTKLAAWIVSNCN------------PHSGREEYVRELSKYIPV-DSY 207 (349)
T ss_dssp --------------------------------TSSEEEEE--S-S--------------H-HHHHHHHHHHTTS-E-EE-
T ss_pred ccccccccccccccccccccccccccccccccCCCceEEEEeeCcC------------CcccHHHHHHHHHhhcCe-Ecc
Confidence 47888999998754322111110 111112234455566666542 233499999998765322 233
Q ss_pred CcccCcceEEecCCchhHHHhhccCeEEEeCCCC---CC-chhHHHHHhhCCeeEEEe--c-cc--ccCCcccCCCCcEE
Q 003853 614 GKQHAEDVIVTSLRSENYHEDLSSSVFCGVLPGD---GW-SGRMEDSILQGCIPVVIQ--D-GI--FLPYENVLNYESFV 684 (791)
Q Consensus 614 g~~~~~~~~~~~~~~~~y~~~l~~S~FCl~p~G~---~~-s~R~~dal~~GCIPVii~--d-~~--~lPf~~~idw~~~s 684 (791)
|++... .......+.+.|++-+|.|+.--. .+ |-.|++|+.+|+|||++. . .+ .+|=...|+.++|.
T Consensus 208 G~c~~~----~~~~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~~SfI~~~df~ 283 (349)
T PF00852_consen 208 GKCGNN----NPCPRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPPNSFIHVDDFK 283 (349)
T ss_dssp SSTT------SSS--S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-GGGSEEGGGSS
T ss_pred CCCCCC----CCcccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCCCCccchhcCC
Confidence 444110 112234588999999999987653 33 788999999999999998 3 22 26667788887773
Q ss_pred EEecCCChhhHHHHHhcCC
Q 003853 685 VRISEDEIPNLINILRGLN 703 (791)
Q Consensus 685 v~i~~~~~~~l~~~L~~i~ 703 (791)
...+|.+.|+.|.
T Consensus 284 ------s~~~La~yl~~l~ 296 (349)
T PF00852_consen 284 ------SPKELADYLKYLD 296 (349)
T ss_dssp ------SHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHh
Confidence 5667777777774
No 28
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=96.21 E-value=0.0022 Score=35.74 Aligned_cols=13 Identities=38% Similarity=1.216 Sum_probs=11.1
Q ss_pred eeeeCCCCcCCCC
Q 003853 139 QCRCFHGFRGKGC 151 (791)
Q Consensus 139 ~C~C~~G~~G~~C 151 (791)
+|.|++||+|++|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 5999999999998
No 29
>KOG1218 consensus Proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=95.59 E-value=0.14 Score=55.65 Aligned_cols=155 Identities=19% Similarity=0.334 Sum_probs=79.1
Q ss_pred ecCCCeeeeCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCC--CCCCCCCCeeeeCCCcccCCCCCCCcCCCc---
Q 003853 134 NHELGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICP--THCDTTRAMCFCGEGTKYPNRPVAEACGFQ--- 208 (791)
Q Consensus 134 ~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~--g~C~~~~g~C~C~~G~~G~~c~~~~~C~~~--- 208 (791)
....+.|.+..++.|..|+...........+. .. ..|. ..++...+.|. ..+|.|..|.....|+..
T Consensus 45 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~----~~---~~c~~~~~~~~~~~~~~-~~~~~g~~C~~~~~~~~~c~~ 116 (316)
T KOG1218|consen 45 EVNSGECGLGYGFVGSVCRIECVCGNAGGGCS----QP---CRCKNGGTCVSSTGYCH-LNGYEGPQCESPCPCGDGCAE 116 (316)
T ss_pred cCCceeEecccccCCCccccccccCCCCCccc----Cc---cccCCCCcccCCCCccc-CCCCCcccccCCCCcCCcccc
Confidence 44578899999999999987632222111000 00 0121 12222233333 578888877655554321
Q ss_pred -ccCCCCCCCCCCCCCcccCcCcccCCCCCCCccccCCcchhhcccccccCccccCCCCCCCcccccccccCcC--CCCC
Q 003853 209 -VNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPVSSTCV--NQCS 285 (791)
Q Consensus 209 -~~~~~~~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~~~c~~g~C~C~~~G~~G~~Ce~~~~~~C~--~~Cs 285 (791)
.+.+....+.+..+|.+..|.. ....+..|..+. .+..+..+..+.|.|. +||.|.+|...... |. ..|.
T Consensus 117 ~~C~~~~~~c~~~~~~~~~~C~~----~~~~g~~C~~~c-~~~~~~~~~~~~c~c~-~g~~g~~~~~~~~~-c~~~~~~~ 189 (316)
T KOG1218|consen 117 KTCANPRRECRCGGGYIGEQCGE----ENLVGLKCQRDC-QCTGGCDCKNGICTCQ-PGFVGVFCVESCSG-CSPLTACE 189 (316)
T ss_pred cccCCCccceecCCcCccccccc----cCCCCCCccCCC-CCccccCCCCCceecc-CCcccccccccCCC-cCCCcccC
Confidence 1111111223344555555543 000111222111 0111112246889998 99999999875321 44 3566
Q ss_pred CCceec--CCeeecCCCccc
Q 003853 286 GHGHCR--GGFCQCDSGWYG 303 (791)
Q Consensus 286 ~~G~C~--~G~C~C~~G~~G 303 (791)
+++.|+ .+.|.|.+++.+
T Consensus 190 ~g~~C~~~~~~~~~~~~~~~ 209 (316)
T KOG1218|consen 190 NGAKCNRSTGSCLCYPGPSG 209 (316)
T ss_pred CCCeeeccccccccCCCCcc
Confidence 777886 678888887765
No 30
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=95.58 E-value=0.0062 Score=33.97 Aligned_cols=13 Identities=54% Similarity=1.551 Sum_probs=9.2
Q ss_pred eeecCCCcccCCC
Q 003853 294 FCQCDSGWYGVDC 306 (791)
Q Consensus 294 ~C~C~~G~~G~~C 306 (791)
.|+|++||+|.+|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 4788888888776
No 31
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=95.40 E-value=0.02 Score=41.61 Aligned_cols=32 Identities=31% Similarity=1.055 Sum_probs=26.3
Q ss_pred CCCC--CCCCCCCEEecCCC--eeeeCCCCc-CCCCC
Q 003853 121 KSCK--SDCSGQGVCNHELG--QCRCFHGFR-GKGCS 152 (791)
Q Consensus 121 ~~C~--~~Cs~~G~C~~~~G--~C~C~~G~~-G~~Ce 152 (791)
++|. .+|.++|+|....| .|.|++||. |..|+
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence 5663 57999999987666 699999999 99885
No 32
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=95.36 E-value=0.011 Score=46.03 Aligned_cols=27 Identities=37% Similarity=0.973 Sum_probs=22.5
Q ss_pred CCCCC----EEecCCCeeeeCCCCcCCCCCc
Q 003853 127 CSGQG----VCNHELGQCRCFHGFRGKGCSE 153 (791)
Q Consensus 127 Cs~~G----~C~~~~G~C~C~~G~~G~~Ce~ 153 (791)
|.++| +|+..+|+|.|.+||+|+.|+.
T Consensus 3 C~~~~~~~~~C~~~~G~C~C~~~~~G~~C~~ 33 (49)
T PF00053_consen 3 CNPHGSSSQTCDPSTGQCVCKPGTTGPRCDQ 33 (49)
T ss_dssp STTCCBCCSSEEETCEEESBSTTEESTTS-E
T ss_pred CcCCCCCCCcccCCCCEEeccccccCCcCcC
Confidence 55555 8998899999999999999996
No 33
>smart00051 DSL delta serrate ligand.
Probab=95.25 E-value=0.019 Score=47.25 Aligned_cols=26 Identities=31% Similarity=0.717 Sum_probs=23.4
Q ss_pred CCCCCCCEEecCCCeeeeCCCCcCCCC
Q 003853 125 SDCSGQGVCNHELGQCRCFHGFRGKGC 151 (791)
Q Consensus 125 ~~Cs~~G~C~~~~G~C~C~~G~~G~~C 151 (791)
+++.++.+|+. .|.|+|.+||+|++|
T Consensus 38 ~d~~~~~~Cd~-~G~~~C~~Gw~G~~C 63 (63)
T smart00051 38 DDFFGHYTCDE-NGNKGCLEGWMGPYC 63 (63)
T ss_pred ccccCCccCCc-CCCEecCCCCcCCCC
Confidence 46789999986 799999999999988
No 34
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=94.90 E-value=0.014 Score=41.25 Aligned_cols=25 Identities=36% Similarity=0.891 Sum_probs=20.8
Q ss_pred CCCCCCCceec-----CCeeecCCCcccCC
Q 003853 281 VNQCSGHGHCR-----GGFCQCDSGWYGVD 305 (791)
Q Consensus 281 ~~~Cs~~G~C~-----~G~C~C~~G~~G~~ 305 (791)
+++|.++|+|+ ...|+|++||+|..
T Consensus 3 ~~~C~n~g~C~~~~~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 3 SNPCQNGGTCIDLPGGGYTCECPPGYTGKR 32 (32)
T ss_dssp TTSSTTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred CCcCCCCeEEEeCCCCCEEeECCCCCccCC
Confidence 35899999997 23899999999964
No 35
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=0.021 Score=59.06 Aligned_cols=41 Identities=39% Similarity=1.047 Sum_probs=35.2
Q ss_pred cCCCCCCCcccccccccCcC----CCCCCCceec-------CCeeecCCCcccCCCCC
Q 003853 262 CKYDGLLGQFCEVPVSSTCV----NQCSGHGHCR-------GGFCQCDSGWYGVDCSI 308 (791)
Q Consensus 262 C~~~G~~G~~Ce~~~~~~C~----~~Cs~~G~C~-------~G~C~C~~G~~G~~C~~ 308 (791)
|+ +|-.|++|. .|+ .+|.|+|.|. +|.|+|++||.|+.|..
T Consensus 132 Cp-~gtyGpdCl-----~Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~ 183 (350)
T KOG4260|consen 132 CP-DGTYGPDCL-----QCPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRY 183 (350)
T ss_pred cC-CCCcCCccc-----cCCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccc
Confidence 66 899999997 454 4799999997 67999999999999986
No 36
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=94.57 E-value=0.046 Score=39.13 Aligned_cols=32 Identities=31% Similarity=1.049 Sum_probs=25.9
Q ss_pred CCCC--CCCCCCCEEecCCC--eeeeCCCCcCCCCC
Q 003853 121 KSCK--SDCSGQGVCNHELG--QCRCFHGFRGKGCS 152 (791)
Q Consensus 121 ~~C~--~~Cs~~G~C~~~~G--~C~C~~G~~G~~Ce 152 (791)
++|. .+|.++|.|....| .|.|+.||.|..|+
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCcCC
Confidence 4563 57998999986665 69999999998885
No 37
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=94.48 E-value=0.031 Score=43.73 Aligned_cols=28 Identities=39% Similarity=1.047 Sum_probs=23.6
Q ss_pred CCCCCCE----EecCCCeeeeCCCCcCCCCCc
Q 003853 126 DCSGQGV----CNHELGQCRCFHGFRGKGCSE 153 (791)
Q Consensus 126 ~Cs~~G~----C~~~~G~C~C~~G~~G~~Ce~ 153 (791)
.|+++|. |+..+|+|.|.+|++|..|+.
T Consensus 3 ~C~~~g~~~~~C~~~~G~C~C~~~~~G~~C~~ 34 (50)
T cd00055 3 DCNGHGSLSGQCDPGTGQCECKPNTTGRRCDR 34 (50)
T ss_pred cCcCCCCCCccccCCCCEEeCCCcCCCCCCCC
Confidence 4555555 988899999999999999985
No 38
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=94.48 E-value=0.011 Score=48.59 Aligned_cols=45 Identities=29% Similarity=0.710 Sum_probs=25.8
Q ss_pred cCccccCCCCCCCcccccccccCcCCC--CCCCceec-CCeeecCCCcccCCC
Q 003853 257 KEECDCKYDGLLGQFCEVPVSSTCVNQ--CSGHGHCR-GGFCQCDSGWYGVDC 306 (791)
Q Consensus 257 ~g~C~C~~~G~~G~~Ce~~~~~~C~~~--Cs~~G~C~-~G~C~C~~G~~G~~C 306 (791)
..+-.|. +.|.|..|+. .|.+. -.+|-+|+ .|.-.|.+||+|++|
T Consensus 16 ~~rv~C~-~nyyG~~C~~----~C~~~~d~~ghy~Cd~~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 16 RIRVVCD-ENYYGPNCSK----FCKPRDDSFGHYTCDSNGNKVCLPGWTGPNC 63 (63)
T ss_dssp --------TTEETTTT-E----E---EEETTEEEEE-SS--EEE-TTEESTTS
T ss_pred EEEEECC-CCCCCccccC----CcCCCcCCcCCcccCCCCCCCCCCCCcCCCC
Confidence 4577898 9999999987 56542 56677896 889999999999998
No 39
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=94.44 E-value=0.14 Score=54.56 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=69.1
Q ss_pred chhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--CH
Q 003853 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--NE 704 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~~ 704 (791)
..+..+.|+++.+.+.|.. ++++..++|||.+|+. ||.++....+ +++++-....+.++..++.++.+.+..+ .+
T Consensus 243 ~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~P-vi~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~ 320 (348)
T cd03820 243 TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLP-VISFDCPTGP-SEIIEDGVNGLLVPNGDVEALAEALLRLMEDE 320 (348)
T ss_pred cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCC-EEEecCCCch-HhhhccCcceEEeCCCCHHHHHHHHHHHHcCH
Confidence 3567899999999998865 3567779999999986 5555533322 2344444567778888877777666665 67
Q ss_pred HHHHHHHHHHHHHHHhheec
Q 003853 705 TEIQFRLANVQKVWQRFLYR 724 (791)
Q Consensus 705 ~~~~~m~~~~~~~~~~~~~~ 724 (791)
+...+|.++.+.+.++|-|.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~ 340 (348)
T cd03820 321 ELRKRMGANARESAERFSIE 340 (348)
T ss_pred HHHHHHHHHHHHHHHHhCHH
Confidence 78889999988888888664
No 40
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.42 E-value=0.13 Score=55.88 Aligned_cols=94 Identities=12% Similarity=0.056 Sum_probs=68.8
Q ss_pred chhHHHhhccCeEEEeCCCC-CCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--CH
Q 003853 628 SENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--NE 704 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G~-~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~~ 704 (791)
..+..+.|+.|.+++.|... +++..++|||.+|+ |||.++.-. +.+++.=....+.++..+..++.+.|..+ .+
T Consensus 257 ~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~-PvI~~~~~~--~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~ 333 (364)
T cd03814 257 GEELAAAYASADVFVFPSRTETFGLVVLEAMASGL-PVVAPDAGG--PADIVTDGENGLLVEPGDAEAFAAALAALLADP 333 (364)
T ss_pred HHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCC-CEEEcCCCC--chhhhcCCcceEEcCCCCHHHHHHHHHHHHcCH
Confidence 45678999999999998764 55778999999999 788876432 34455445566777777776555555554 57
Q ss_pred HHHHHHHHHHHHHHHhheec
Q 003853 705 TEIQFRLANVQKVWQRFLYR 724 (791)
Q Consensus 705 ~~~~~m~~~~~~~~~~~~~~ 724 (791)
+.+.+|.++.++..++|-|.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~ 353 (364)
T cd03814 334 ELRRRMAARARAEAERRSWE 353 (364)
T ss_pred HHHHHHHHHHHHHHhhcCHH
Confidence 78888998888877777654
No 41
>KOG1218 consensus Proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=94.37 E-value=0.38 Score=52.28 Aligned_cols=51 Identities=35% Similarity=0.965 Sum_probs=36.0
Q ss_pred ccccCCCCCCCcccccc--cccCcCCCC--CCCceecCCeeecCCCcccCCCCCcc
Q 003853 259 ECDCKYDGLLGQFCEVP--VSSTCVNQC--SGHGHCRGGFCQCDSGWYGVDCSIPS 310 (791)
Q Consensus 259 ~C~C~~~G~~G~~Ce~~--~~~~C~~~C--s~~G~C~~G~C~C~~G~~G~~C~~~~ 310 (791)
.|.|. .+|.+..|... ....|...| ..+..+..+.|.|.+||.|..|....
T Consensus 125 ~c~~~-~~~~~~~C~~~~~~g~~C~~~c~~~~~~~~~~~~c~c~~g~~g~~~~~~~ 179 (316)
T KOG1218|consen 125 ECRCG-GGYIGEQCGEENLVGLKCQRDCQCTGGCDCKNGICTCQPGFVGVFCVESC 179 (316)
T ss_pred ceecC-CcCccccccccCCCCCCccCCCCCccccCCCCCceeccCCcccccccccC
Confidence 47776 67777777761 234555555 34444568999999999999998864
No 42
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=94.08 E-value=0.17 Score=54.26 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=69.9
Q ss_pred chhHHHhhccCeEEEeCCCC-CCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--CH
Q 003853 628 SENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--NE 704 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G~-~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~~ 704 (791)
..++.+.|..|.+.+.|.-. +.+..++|||.+|+ |||.++. -.+.+.+.-....+.++..+..++.+.|..+ .+
T Consensus 266 ~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~-pvI~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 266 DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGL-PVVASDV--GGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDP 342 (374)
T ss_pred hhhHHHHHHhcCEEEecchhccccchHHHHHHcCC-cEEEeCC--CChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcCh
Confidence 36788999999999887653 55778999999996 6777765 3456666667788888888777777777664 45
Q ss_pred HHHHHHHHHHH-HHHHhheec
Q 003853 705 TEIQFRLANVQ-KVWQRFLYR 724 (791)
Q Consensus 705 ~~~~~m~~~~~-~~~~~~~~~ 724 (791)
+...+|.++.+ .+.+.|-|.
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~ 363 (374)
T cd03801 343 ELRRRLGEAARERVAERFSWD 363 (374)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 66778888877 555666553
No 43
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=93.88 E-value=0.12 Score=50.56 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=55.8
Q ss_pred chhHHHhhccCeEEEeCCCC-CCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcCCH--
Q 003853 628 SENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGLNE-- 704 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G~-~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i~~-- 704 (791)
..++.+.++.|.+-+.|... +++.-++|||.+|| |||+++ .-.+.+++.=..-.+.++..++.+|.+.+..+-.
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~-pvI~~~--~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGC-PVIASD--IGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT--EEEEES--STHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ccccccccccceecccccccccccccccccccccc-ceeecc--ccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 45788999999999998774 66788999999999 677776 2233344433334566667788777777766533
Q ss_pred HHHHHHHHHHH
Q 003853 705 TEIQFRLANVQ 715 (791)
Q Consensus 705 ~~~~~m~~~~~ 715 (791)
+....|.++.+
T Consensus 160 ~~~~~l~~~~~ 170 (172)
T PF00534_consen 160 ELRQKLGKNAR 170 (172)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 44555665554
No 44
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=93.87 E-value=0.065 Score=41.21 Aligned_cols=23 Identities=35% Similarity=1.012 Sum_probs=20.7
Q ss_pred CEEecCCCeeeeCCCCcCCCCCc
Q 003853 131 GVCNHELGQCRCFHGFRGKGCSE 153 (791)
Q Consensus 131 G~C~~~~G~C~C~~G~~G~~Ce~ 153 (791)
..|+..+|+|.|.+|++|..|+.
T Consensus 11 ~~C~~~~G~C~C~~~~~G~~C~~ 33 (46)
T smart00180 11 GTCDPDTGQCECKPNVTGRRCDR 33 (46)
T ss_pred CcccCCCCEEECCCCCCCCCCCc
Confidence 57887789999999999999985
No 45
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=93.67 E-value=0.085 Score=37.09 Aligned_cols=29 Identities=34% Similarity=0.953 Sum_probs=23.3
Q ss_pred CCCCCCCCEEecCCC--eeeeCCCCcCC-CCC
Q 003853 124 KSDCSGQGVCNHELG--QCRCFHGFRGK-GCS 152 (791)
Q Consensus 124 ~~~Cs~~G~C~~~~G--~C~C~~G~~G~-~Ce 152 (791)
+..|.+++.|....+ .|.|+.||.|. .|+
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~~~C~ 36 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGDRSCE 36 (36)
T ss_pred CCCCCCCCEEecCCCCeEeECCCCCcccCCcC
Confidence 367888999986544 89999999999 664
No 46
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=93.66 E-value=0.23 Score=54.23 Aligned_cols=91 Identities=9% Similarity=0.028 Sum_probs=68.3
Q ss_pred chhHHHhhccCeEEEeCC--CCCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHh-c--C
Q 003853 628 SENYHEDLSSSVFCGVLP--GDGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILR-G--L 702 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~--G~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~-~--i 702 (791)
..+..+.|+.|...+.|. .++++.-++|||.+|+ |||+++. -+..+++.-..-.+.++.++...+.+.|. . .
T Consensus 254 ~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~-PvI~~~~--~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~ 330 (355)
T cd03819 254 CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGR-PVIASDH--GGARETVRPGETGLLVPPGDAEALAQALDQILSL 330 (355)
T ss_pred cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCC-CEEEcCC--CCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 457889999999888876 3456677999999999 8888763 34566676666677788888887777763 3 3
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 003853 703 NETEIQFRLANVQKVWQRF 721 (791)
Q Consensus 703 ~~~~~~~m~~~~~~~~~~~ 721 (791)
++++..+|+++.++.....
T Consensus 331 ~~~~~~~~~~~a~~~~~~~ 349 (355)
T cd03819 331 LPEGRAKMFAKARMCVETL 349 (355)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 6788888998888766444
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=93.62 E-value=0.19 Score=54.24 Aligned_cols=88 Identities=11% Similarity=0.105 Sum_probs=64.5
Q ss_pred chhHHHhhccCeEEEeCC--CCCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--C
Q 003853 628 SENYHEDLSSSVFCGVLP--GDGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--N 703 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~--G~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~ 703 (791)
..+..+.|+.+.+.+.|. +.+++..++|||.+| +|||.++.- ...++++-....+.++..+..+|.+.+..+ .
T Consensus 253 ~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G-~Pvi~~~~~--~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 253 QEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAG-VPVIASDIG--GMAELVRDGVNGLLFPPGDAEDLAAALERLIDD 329 (359)
T ss_pred HHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCC-CCEEECCCC--CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhC
Confidence 367889999999999986 456777899999999 788887642 345566666678888888777666555544 4
Q ss_pred HHHHHHHHHHHHHHH
Q 003853 704 ETEIQFRLANVQKVW 718 (791)
Q Consensus 704 ~~~~~~m~~~~~~~~ 718 (791)
++...+|+++.++..
T Consensus 330 ~~~~~~~~~~~~~~~ 344 (359)
T cd03823 330 PDLLERLRAGIEPPR 344 (359)
T ss_pred hHHHHHHHHhHHHhh
Confidence 667777777766443
No 48
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=93.32 E-value=0.25 Score=53.70 Aligned_cols=93 Identities=18% Similarity=0.109 Sum_probs=67.1
Q ss_pred chhHHHhhccCeEEEeCCC-C--CCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--
Q 003853 628 SENYHEDLSSSVFCGVLPG-D--GWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL-- 702 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G-~--~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i-- 702 (791)
..+..+.|+.+.+.+.|.- . +++..++|||.+|+ |||.++.-. .+.+.+ ....+.++..+..++.+.|..+
T Consensus 258 ~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~-PvI~~~~~~--~~~i~~-~~~g~~~~~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 258 DEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGK-PVISTPVGH--AEEVLD-GGTGLLVPPGDPAALAEAIRRLLA 333 (366)
T ss_pred HHHHHHHHhhcCEEEecccccccccchHHHHHHHcCC-CEEecCCCC--hheeee-CCCcEEEcCCCHHHHHHHHHHHHc
Confidence 4578899999999988865 3 45777999999999 999887533 344444 3445667777777666666554
Q ss_pred CHHHHHHHHHHHHHHHHhheec
Q 003853 703 NETEIQFRLANVQKVWQRFLYR 724 (791)
Q Consensus 703 ~~~~~~~m~~~~~~~~~~~~~~ 724 (791)
.+++..+|+++.++..+.|-|.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~s~~ 355 (366)
T cd03822 334 DPELAQALRARAREYARAMSWE 355 (366)
T ss_pred ChHHHHHHHHHHHHHHhhCCHH
Confidence 3467888999988888776553
No 49
>smart00181 EGF Epidermal growth factor-like domain.
Probab=93.12 E-value=0.13 Score=36.61 Aligned_cols=27 Identities=37% Similarity=0.947 Sum_probs=21.6
Q ss_pred CCCCCCCEEecCCC--eeeeCCCCcC-CCCC
Q 003853 125 SDCSGQGVCNHELG--QCRCFHGFRG-KGCS 152 (791)
Q Consensus 125 ~~Cs~~G~C~~~~G--~C~C~~G~~G-~~Ce 152 (791)
..|.++ +|....| .|.|+.||.| ..|+
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~~~C~ 35 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTGDKRCE 35 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCccCCccC
Confidence 468888 9986544 7999999999 7774
No 50
>PHA02887 EGF-like protein; Provisional
Probab=93.04 E-value=0.11 Score=47.17 Aligned_cols=33 Identities=33% Similarity=0.815 Sum_probs=25.6
Q ss_pred CCCC----CCCCCCCEEecCC----CeeeeCCCCcCCCCCcc
Q 003853 121 KSCK----SDCSGQGVCNHEL----GQCRCFHGFRGKGCSER 154 (791)
Q Consensus 121 ~~C~----~~Cs~~G~C~~~~----G~C~C~~G~~G~~Ce~~ 154 (791)
..|+ +-|- ||+|.... -.|.|+.||+|..|+..
T Consensus 84 ~pC~~eyk~YCi-HG~C~yI~dL~epsCrC~~GYtG~RCE~v 124 (126)
T PHA02887 84 EKCKNDFNDFCI-NGECMNIIDLDEKFCICNKGYTGIRCDEV 124 (126)
T ss_pred cccChHhhCEee-CCEEEccccCCCceeECCCCcccCCCCcc
Confidence 5674 4588 78996433 37999999999999974
No 51
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=92.70 E-value=0.34 Score=56.05 Aligned_cols=93 Identities=10% Similarity=0.081 Sum_probs=70.9
Q ss_pred hhHHHhhccCeEEEeCCCC-CCchhHHHHHhhCCeeEEEecccccCCcccCCC---CcEEEEecCCChhhHHHHHhcC--
Q 003853 629 ENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQDGIFLPYENVLNY---ESFVVRISEDEIPNLINILRGL-- 702 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G~-~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw---~~~sv~i~~~~~~~l~~~L~~i-- 702 (791)
.+..+.|+.+...+.|... +++.-++|||.+| +|||.++.-- ..++++= .+..+.++..+...|.+.|..+
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G-~PVI~s~~gg--~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGFVVLEAMASG-VPVVAARAGG--IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCcHHHHHHHcC-CCEEEcCCCC--cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 5788999999999988763 5567799999999 9999987532 3445543 6777888888887766666554
Q ss_pred CHHHHHHHHHHHHHHHHhheec
Q 003853 703 NETEIQFRLANVQKVWQRFLYR 724 (791)
Q Consensus 703 ~~~~~~~m~~~~~~~~~~~~~~ 724 (791)
.++...+|.++.++..++|-|.
T Consensus 400 ~~~~~~~~~~~a~~~~~~fsw~ 421 (465)
T PLN02871 400 DPELRERMGAAAREEVEKWDWR 421 (465)
T ss_pred CHHHHHHHHHHHHHHHHhCCHH
Confidence 4677888999998888887665
No 52
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=92.59 E-value=1.3 Score=49.82 Aligned_cols=92 Identities=17% Similarity=0.052 Sum_probs=64.8
Q ss_pred hhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--CHH
Q 003853 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--NET 705 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~~~ 705 (791)
.++.+.|+.|...+.|.- .+.+.-++|||.+|+ |||.++.- +..++|.-..-.+.++..+...|.+.+..+ .++
T Consensus 292 ~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~-PVIas~~~--g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~~ 368 (396)
T cd03818 292 DQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGC-LVVGSDTA--PVREVITDGENGLLVDFFDPDALAAAVIELLDDPA 368 (396)
T ss_pred HHHHHHHHhCcEEEEcCcccccchHHHHHHHCCC-CEEEcCCC--CchhhcccCCceEEcCCCCHHHHHHHHHHHHhCHH
Confidence 567888999988777653 244567999999998 88887753 556777666667778877776665555443 456
Q ss_pred HHHHHHHHHHHHHHh-hee
Q 003853 706 EIQFRLANVQKVWQR-FLY 723 (791)
Q Consensus 706 ~~~~m~~~~~~~~~~-~~~ 723 (791)
+..+|.++.++.... |-|
T Consensus 369 ~~~~l~~~ar~~~~~~fs~ 387 (396)
T cd03818 369 RRARLRRAARRTALRYDLL 387 (396)
T ss_pred HHHHHHHHHHHHHHHhccH
Confidence 778888888765544 554
No 53
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=92.42 E-value=0.26 Score=54.38 Aligned_cols=90 Identities=20% Similarity=0.310 Sum_probs=66.8
Q ss_pred chhHHHhhccCeEEEeCCCC----------CC--chhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhH
Q 003853 628 SENYHEDLSSSVFCGVLPGD----------GW--SGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNL 695 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G~----------~~--s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l 695 (791)
..+..+.|+. .|.|++.++ .+ -.+++++|.+| +|||+++.-.++ ++|.=....+.++ ++.+|
T Consensus 217 ~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G-~PVI~~~~~~~~--~~V~~~~~G~~v~--~~~el 290 (333)
T PRK09814 217 PEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAG-LPVIVWSKAAIA--DFIVENGLGFVVD--SLEEL 290 (333)
T ss_pred HHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCC-CCEEECCCccHH--HHHHhCCceEEeC--CHHHH
Confidence 3455666666 888888765 12 23589998888 699998764333 4555566677776 67789
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhhee
Q 003853 696 INILRGLNETEIQFRLANVQKVWQRFLY 723 (791)
Q Consensus 696 ~~~L~~i~~~~~~~m~~~~~~~~~~~~~ 723 (791)
.+.|+.++++++.+|+++.+++.+++.-
T Consensus 291 ~~~l~~~~~~~~~~m~~n~~~~~~~~~~ 318 (333)
T PRK09814 291 PEIIDNITEEEYQEMVENVKKISKLLRN 318 (333)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998888743
No 54
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=92.35 E-value=0.45 Score=52.40 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=67.1
Q ss_pred hhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--CHH
Q 003853 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--NET 705 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~~~ 705 (791)
.+..+.|+.+...+.|.- .+++.-++|||.+| +|||.++.-. ..+++.-..-.+.++..+..++.+.+..+ .++
T Consensus 262 ~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g-~PvI~s~~~~--~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~ 338 (371)
T cd04962 262 DHVEELLSIADLFLLPSEKESFGLAALEAMACG-VPVVASNAGG--IPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDE 338 (371)
T ss_pred ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcC-CCEEEeCCCC--chhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHH
Confidence 467889999999998864 34566799999999 8899987643 44566555555667777777666655543 577
Q ss_pred HHHHHHHHHHHH-HHhheec
Q 003853 706 EIQFRLANVQKV-WQRFLYR 724 (791)
Q Consensus 706 ~~~~m~~~~~~~-~~~~~~~ 724 (791)
.+.+|+++.++. .++|-|.
T Consensus 339 ~~~~~~~~~~~~~~~~fs~~ 358 (371)
T cd04962 339 LWQEFSRAARNRAAERFDSE 358 (371)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 788999988876 5666543
No 55
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=92.30 E-value=0.62 Score=51.70 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=75.7
Q ss_pred ccCCceEEEeecCCCCCCCCCCCCCCcchhHHHHHHHHhcCCCCCccccCcccCcceEEecCCchhHHHhhccCeEEEeC
Q 003853 565 REKRKTLFYFNGNLGSAYPNGRPESSYSMGVRQKLAEEYGSSPNKEGKLGKQHAEDVIVTSLRSENYHEDLSSSVFCGVL 644 (791)
Q Consensus 565 ~~~R~~L~~F~G~~~~~~~~~~~~~~ys~~iR~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~l~~S~FCl~p 644 (791)
..+++.++.+..+..+ ..-|.++++.+...-... ..|.+..+. ........-.+.+.+-||=|..
T Consensus 193 ~~k~~~~aw~vSnc~~------------~~~R~~~~~~L~k~l~iD-~YG~c~~~~--~~~~~~~~~~~~~s~YKFyLAf 257 (372)
T KOG2619|consen 193 SAKTKLAAWLVSNCIP------------RSARLDYYKELMKHLEID-SYGECLRKN--ANRDPSDCLLETLSHYKFYLAF 257 (372)
T ss_pred ccccceeeeeccccCc------------chHHHHHHHHHHhhCcee-ecccccccc--ccCCCCCcceeecccceEEEEe
Confidence 4566777777776532 346777777765432222 223322211 0112233456788899999987
Q ss_pred CCCC----CchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecC-CChhhHHHHHhcCCHHHH
Q 003853 645 PGDG----WSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISE-DEIPNLINILRGLNETEI 707 (791)
Q Consensus 645 ~G~~----~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~-~~~~~l~~~L~~i~~~~~ 707 (791)
--.- .+..|+-|+.+|.|||++.......| ++ .+..|.|+. ..+.+|...|+.+..++.
T Consensus 258 ENS~c~DYVTEKfw~al~~gsVPVvlg~~n~e~f---vP-~~SfI~vdDF~s~~ela~ylk~L~~n~~ 321 (372)
T KOG2619|consen 258 ENSNCEDYVTEKFWNALDAGSVPVVLGPPNYENF---VP-PDSFIHVDDFQSPQELAAYLKKLDKNPA 321 (372)
T ss_pred cccCCcccccHHHHhhhhcCcccEEECCcccccc---CC-CcceEehhhcCCHHHHHHHHHHhhcCHH
Confidence 6532 28899999999999999987544333 34 455555543 445678888888854443
No 56
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=92.27 E-value=0.36 Score=53.57 Aligned_cols=93 Identities=11% Similarity=-0.006 Sum_probs=66.5
Q ss_pred hhHHHhhccCeEEEeCCCC-CCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--CHH
Q 003853 629 ENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--NET 705 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G~-~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~~~ 705 (791)
.+..+.|+.|...+.|.-. +++.-++|||.+| +|||.++.- ...++|.=....+.++..+..++.+.+..+ .++
T Consensus 294 ~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G-~Pvi~s~~~--~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~ 370 (398)
T cd03800 294 EDLPALYRAADVFVNPALYEPFGLTALEAMACG-LPVVATAVG--GPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPA 370 (398)
T ss_pred HHHHHHHHhCCEEEecccccccCcHHHHHHhcC-CCEEECCCC--CHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHH
Confidence 4677889999998887653 4456699999999 699998742 344555545567777777777666655444 467
Q ss_pred HHHHHHHHHHHHH-Hhheec
Q 003853 706 EIQFRLANVQKVW-QRFLYR 724 (791)
Q Consensus 706 ~~~~m~~~~~~~~-~~~~~~ 724 (791)
++.+|.++.++.. ++|-|.
T Consensus 371 ~~~~~~~~a~~~~~~~~s~~ 390 (398)
T cd03800 371 LRRRLSRAGLRRARARYTWE 390 (398)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 7888988887766 777664
No 57
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=92.12 E-value=0.46 Score=51.57 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=66.3
Q ss_pred chhHHHhhccCeEEEeCCCCC-C-----chhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhc
Q 003853 628 SENYHEDLSSSVFCGVLPGDG-W-----SGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRG 701 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G~~-~-----s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~ 701 (791)
..++.+.|+.+.+.+.|.... + ...++|||.+|+ |||.++.-..+ +.+.=....+.++..+..+|.+.|..
T Consensus 285 ~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~-pvi~~~~~~~~--~~~~~~~~g~~~~~~~~~~l~~~i~~ 361 (394)
T cd03794 285 KEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGK-PVLASVDGESA--ELVEEAGAGLVVPPGDPEALAAAILE 361 (394)
T ss_pred hHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCC-cEEEecCCCch--hhhccCCcceEeCCCCHHHHHHHHHH
Confidence 357788999999999887642 2 456899999995 88887654322 22222256677777788777777766
Q ss_pred C--CHHHHHHHHHHHHHHHH-hheec
Q 003853 702 L--NETEIQFRLANVQKVWQ-RFLYR 724 (791)
Q Consensus 702 i--~~~~~~~m~~~~~~~~~-~~~~~ 724 (791)
+ .++++.+|.++.++... +|-|.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~s~~ 387 (394)
T cd03794 362 LLDDPEERAEMGENGRRYVEEKFSRE 387 (394)
T ss_pred HHhChHHHHHHHHHHHHHHHHhhcHH
Confidence 5 67888889888877665 66553
No 58
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=92.11 E-value=0.52 Score=50.45 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=64.2
Q ss_pred chhHHHhhccCeEEEeCCCC-CCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--CH
Q 003853 628 SENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--NE 704 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G~-~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~~ 704 (791)
..+..+.|+.+.+++.|... +.+..++|||.+| +|||.++.-.. .+.+.=....+.++..+...+.+.+..+ .+
T Consensus 254 ~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G-~Pvi~s~~~~~--~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 254 RDDVPELLAAADVFVLPSYREGLPRVLLEAMAMG-RPVIATDVPGC--REAVIDGVNGFLVPPGDAEALADAIERLIEDP 330 (359)
T ss_pred cccHHHHHHhccEEEecCcccCcchHHHHHHHcC-CCEEEecCCCc--hhhhhcCcceEEECCCCHHHHHHHHHHHHhCH
Confidence 45678899999999988753 5577799999999 58888765432 3444334556677777777666666553 46
Q ss_pred HHHHHHHHHHHHH-HHhhee
Q 003853 705 TEIQFRLANVQKV-WQRFLY 723 (791)
Q Consensus 705 ~~~~~m~~~~~~~-~~~~~~ 723 (791)
+.+.+|.++.++. .++|-+
T Consensus 331 ~~~~~~~~~~~~~~~~~~s~ 350 (359)
T cd03808 331 ELRARMGQAARKRAEEEFDE 350 (359)
T ss_pred HHHHHHHHHHHHHHHHhcCH
Confidence 6777777777665 555543
No 59
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=92.01 E-value=0.66 Score=50.94 Aligned_cols=93 Identities=15% Similarity=0.060 Sum_probs=65.4
Q ss_pred hhHHHhhccCeEEEeCCC-------CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhc
Q 003853 629 ENYHEDLSSSVFCGVLPG-------DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRG 701 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G-------~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~ 701 (791)
.+..+.|+.|...+.|.- .+++..++|||.+|+ |||.++.-. ..++|.=....+.++..+..+|.+.|+.
T Consensus 256 ~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~-PvI~s~~~~--~~e~i~~~~~g~~~~~~d~~~l~~~i~~ 332 (367)
T cd05844 256 AEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGV-PVVATRHGG--IPEAVEDGETGLLVPEGDVAALAAALGR 332 (367)
T ss_pred HHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCC-CEEEeCCCC--chhheecCCeeEEECCCCHHHHHHHHHH
Confidence 457788889988777642 345677999999995 999988643 3445554567788888887777666655
Q ss_pred C--CHHHHHHHHHHHHHH-HHhheec
Q 003853 702 L--NETEIQFRLANVQKV-WQRFLYR 724 (791)
Q Consensus 702 i--~~~~~~~m~~~~~~~-~~~~~~~ 724 (791)
+ +++...+|.++.++. .++|-|.
T Consensus 333 l~~~~~~~~~~~~~a~~~~~~~~s~~ 358 (367)
T cd05844 333 LLADPDLRARMGAAGRRRVEERFDLR 358 (367)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHCCHH
Confidence 4 456677888777654 4677664
No 60
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=91.70 E-value=1.5 Score=48.70 Aligned_cols=94 Identities=11% Similarity=0.052 Sum_probs=65.0
Q ss_pred chhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--CH
Q 003853 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--NE 704 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~~ 704 (791)
..+..+.|+.|.+.+.|.- .+++.-++|||.+|+ |||.+|.- ...+++.-....+.++..+..++.+.|..+ .+
T Consensus 263 ~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~-Pvv~s~~~--g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~ 339 (374)
T TIGR03088 263 RDDVPALMQALDLFVLPSLAEGISNTILEAMASGL-PVIATAVG--GNPELVQHGVTGALVPPGDAVALARALQPYVSDP 339 (374)
T ss_pred cCCHHHHHHhcCEEEeccccccCchHHHHHHHcCC-CEEEcCCC--CcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCH
Confidence 3467788899988777643 355667999999995 99998853 345566656677788888877666666554 35
Q ss_pred HHHHHHHHHHHHHH-Hhheec
Q 003853 705 TEIQFRLANVQKVW-QRFLYR 724 (791)
Q Consensus 705 ~~~~~m~~~~~~~~-~~~~~~ 724 (791)
+...+|.++.++.. ++|-|.
T Consensus 340 ~~~~~~~~~a~~~~~~~fs~~ 360 (374)
T TIGR03088 340 AARRAHGAAGRARAEQQFSIN 360 (374)
T ss_pred HHHHHHHHHHHHHHHHhCCHH
Confidence 56667776666543 566543
No 61
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=0.73 Score=55.73 Aligned_cols=35 Identities=37% Similarity=0.835 Sum_probs=30.8
Q ss_pred cCcCCCCCCCceec-CCeeecCCCcccCCCCCcccc
Q 003853 278 STCVNQCSGHGHCR-GGFCQCDSGWYGVDCSIPSVM 312 (791)
Q Consensus 278 ~~C~~~Cs~~G~C~-~G~C~C~~G~~G~~C~~~~~~ 312 (791)
..|+.+|++||.|. .+.|+|.+||.+++|+.....
T Consensus 626 ~~~~~~C~g~GVCnn~~~ChC~~gwapp~C~~~~~~ 661 (716)
T KOG3607|consen 626 SCCPTTCNGHGVCNNELNCHCEPGWAPPFCFIFGYG 661 (716)
T ss_pred cccccccCCCcccCCCcceeeCCCCCCCccccccCC
Confidence 36777899999998 679999999999999998755
No 62
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=91.33 E-value=0.46 Score=51.52 Aligned_cols=92 Identities=11% Similarity=0.048 Sum_probs=66.7
Q ss_pred chhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhc-C-CH
Q 003853 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRG-L-NE 704 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~-i-~~ 704 (791)
..++.+.|+.+.+.+.|.- ++++.-++|||.+|+ |||.++.- .+.+++ .+..+.++..+..++.+.|+. + .+
T Consensus 263 ~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~-pvI~~~~~--~~~e~~--~~~~~~~~~~~~~~~~~~i~~l~~~~ 337 (365)
T cd03809 263 DEELAALYRGARAFVFPSLYEGFGLPVLEAMACGT-PVIASNIS--SLPEVA--GDAALYFDPLDPEALAAAIERLLEDP 337 (365)
T ss_pred hhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCC-cEEecCCC--Ccccee--cCceeeeCCCCHHHHHHHHHHHhcCH
Confidence 3567889999998888753 456667999999995 78887652 233444 345667777787777777766 3 56
Q ss_pred HHHHHHHHHHHHHHHhheec
Q 003853 705 TEIQFRLANVQKVWQRFLYR 724 (791)
Q Consensus 705 ~~~~~m~~~~~~~~~~~~~~ 724 (791)
+...+|.++.+.+.++|-|+
T Consensus 338 ~~~~~~~~~~~~~~~~~sw~ 357 (365)
T cd03809 338 ALREELRERGLARAKRFSWE 357 (365)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 77788888888888888775
No 63
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=91.17 E-value=0.11 Score=40.88 Aligned_cols=30 Identities=33% Similarity=0.679 Sum_probs=17.9
Q ss_pred CCCCCCCEEec----CCC--eeeeCCCCcCCCCCcc
Q 003853 125 SDCSGQGVCNH----ELG--QCRCFHGFRGKGCSER 154 (791)
Q Consensus 125 ~~Cs~~G~C~~----~~G--~C~C~~G~~G~~Ce~~ 154 (791)
-.|||||..-. ..| .|.|+.-|.|++|++.
T Consensus 17 i~CSGHGr~flDg~~~dG~p~CECn~Cy~GpdCS~~ 52 (56)
T PF04863_consen 17 ISCSGHGRAFLDGLIADGSPVCECNSCYGGPDCSTL 52 (56)
T ss_dssp S--TTSEE--TTS-EETTEE--EE-TTEESTTS-EE
T ss_pred CCcCCCCeeeeccccccCCccccccCCcCCCCcccC
Confidence 36999999852 134 5999999999999986
No 64
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=90.74 E-value=0.88 Score=51.14 Aligned_cols=94 Identities=11% Similarity=-0.022 Sum_probs=66.2
Q ss_pred chhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--CH
Q 003853 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--NE 704 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~~ 704 (791)
..+..+.|+.+..++.|.= .+++.-++|||.+|+ |||.++.-- ..++|.=....+.++..+...+.+.|..+ .+
T Consensus 293 ~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~-Pvi~~~~~~--~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~ 369 (405)
T TIGR03449 293 PEELVHVYRAADVVAVPSYNESFGLVAMEAQACGT-PVVAARVGG--LPVAVADGETGLLVDGHDPADWADALARLLDDP 369 (405)
T ss_pred HHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCC-CEEEecCCC--cHhhhccCCceEECCCCCHHHHHHHHHHHHhCH
Confidence 3567889999998887753 355667999999995 898877422 33455444556777777877665555443 45
Q ss_pred HHHHHHHHHHHHHHHhheec
Q 003853 705 TEIQFRLANVQKVWQRFLYR 724 (791)
Q Consensus 705 ~~~~~m~~~~~~~~~~~~~~ 724 (791)
+...+|.++.++..++|-|.
T Consensus 370 ~~~~~~~~~~~~~~~~fsw~ 389 (405)
T TIGR03449 370 RTRIRMGAAAVEHAAGFSWA 389 (405)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 67788988888877877664
No 65
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=90.11 E-value=1.2 Score=50.59 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=67.6
Q ss_pred chhHHHhhccCeEEEeCCC-------CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHh
Q 003853 628 SENYHEDLSSSVFCGVLPG-------DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILR 700 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G-------~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~ 700 (791)
..+..+.|+.+...+.|.= +++..-++|||.+| +|||.++.--. .++|.=..-.+.++..+...|.+.|.
T Consensus 289 ~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G-~PVI~t~~~g~--~E~v~~~~~G~lv~~~d~~~la~ai~ 365 (406)
T PRK15427 289 SHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVG-IPVVSTLHSGI--PELVEADKSGWLVPENDAQALAQRLA 365 (406)
T ss_pred HHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCC-CCEEEeCCCCc--hhhhcCCCceEEeCCCCHHHHHHHHH
Confidence 3567889999998888752 35556799999999 59999875333 35555556677788888887777776
Q ss_pred cC---CHHHHHHHHHHHHHH-HHhhee
Q 003853 701 GL---NETEIQFRLANVQKV-WQRFLY 723 (791)
Q Consensus 701 ~i---~~~~~~~m~~~~~~~-~~~~~~ 723 (791)
.+ ++++..+|.++.++. .++|-|
T Consensus 366 ~l~~~d~~~~~~~~~~ar~~v~~~f~~ 392 (406)
T PRK15427 366 AFSQLDTDELAPVVKRAREKVETDFNQ 392 (406)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcCH
Confidence 55 667788898888754 455644
No 66
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=89.68 E-value=1.6 Score=49.45 Aligned_cols=145 Identities=19% Similarity=0.243 Sum_probs=86.0
Q ss_pred ccCCceEEEeecCCCCCCCCCCCCCCcchhHHHHHHHHhcCCCCCcc-ccCcccCcceEEecCCchhHHHhhccCeEEEe
Q 003853 565 REKRKTLFYFNGNLGSAYPNGRPESSYSMGVRQKLAEEYGSSPNKEG-KLGKQHAEDVIVTSLRSENYHEDLSSSVFCGV 643 (791)
Q Consensus 565 ~~~R~~L~~F~G~~~~~~~~~~~~~~ys~~iR~~L~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~y~~~l~~S~FCl~ 643 (791)
=.+|.-.+||+|+.. .+.+|+.|++.-.+.++... ..... +............=++...+.+|=+.
T Consensus 154 W~~K~p~afWRG~~~------------~~~~R~~L~~~~~~~~~~~~a~i~~~-d~~~~~~~~~~~~~l~~~~~yKYli~ 220 (395)
T PF05686_consen 154 WEDKKPKAFWRGSPT------------VAETRQRLVRCSRSHPDLWDARITKQ-DWDKEYKPGFKHVPLEDQCKYKYLIY 220 (395)
T ss_pred hhhcccceEECCCcC------------CCcchhHHHHHhccCCccceeeechh-hhhhhccccccccCHHHHhhhheeec
Confidence 356778899999863 23379999887644332110 00000 00000000001112455677889888
Q ss_pred CCCCCCchhHHHHHhhCCeeEEEecccccCCcc-cCCCCcEEEEecC-CChhhHHHHHhcC--CHHHHHHHHHHHHHHHH
Q 003853 644 LPGDGWSGRMEDSILQGCIPVVIQDGIFLPYEN-VLNYESFVVRISE-DEIPNLINILRGL--NETEIQFRLANVQKVWQ 719 (791)
Q Consensus 644 p~G~~~s~R~~dal~~GCIPVii~d~~~lPf~~-~idw~~~sv~i~~-~~~~~l~~~L~~i--~~~~~~~m~~~~~~~~~ 719 (791)
.-|.++|.||.=-|++|.+.+.+...|.-=|.+ ..+|.-|.- |.. +++.+|+++++-. .+++.+++-++.+.+.+
T Consensus 221 idG~~~S~RlkylL~c~SvVl~~~~~~~e~f~~~L~P~vHYVP-V~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g~~f~~ 299 (395)
T PF05686_consen 221 IDGNAWSGRLKYLLACNSVVLKVKSPYYEFFYRALKPWVHYVP-VKRDDDLSDLEEKVEWLNAHDDEAQRIAENGQRFAR 299 (395)
T ss_pred CCCceeehhHHHHHcCCceEEEeCCcHHHHHHhhhcccccEEE-eccccchhhHHHHhhhcccChHHHHHHHHHHHHHHH
Confidence 999999999988899999999886555444433 467776643 333 4566666665543 35666667677776665
Q ss_pred hhee
Q 003853 720 RFLY 723 (791)
Q Consensus 720 ~~~~ 723 (791)
.++-
T Consensus 300 ~~L~ 303 (395)
T PF05686_consen 300 EYLT 303 (395)
T ss_pred HHhh
Confidence 5543
No 67
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=89.65 E-value=0.72 Score=40.37 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=46.3
Q ss_pred CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEec-CCChhhHHHHHhcCCHHHHHHHHHHHHHHHH-hheec
Q 003853 647 DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRIS-EDEIPNLINILRGLNETEIQFRLANVQKVWQ-RFLYR 724 (791)
Q Consensus 647 ~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~-~~~~~~l~~~L~~i~~~~~~~m~~~~~~~~~-~~~~~ 724 (791)
++++.|++|+|.+|++.|.-. . ..+.+.++..+-.+.+. .+++.+....|.+ .++++++|.++.++... +|.|.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~-~--~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~-~~~~~~~ia~~a~~~v~~~~t~~ 84 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDD-S--PGLREIFEDGEHIITYNDPEELAEKIEYLLE-NPEERRRIAKNARERVLKRHTWE 84 (92)
T ss_pred CCCchHHHHHHHCCCeEEECC-h--HHHHHHcCCCCeEEEECCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHhCCHH
Confidence 567899999999998655443 2 22333456665566664 4444433333333 78889999888865444 66654
No 68
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=89.42 E-value=0.29 Score=36.70 Aligned_cols=27 Identities=30% Similarity=0.943 Sum_probs=22.9
Q ss_pred CCC---CCCCCCCCEEecCCC--eeeeCCCCc
Q 003853 121 KSC---KSDCSGQGVCNHELG--QCRCFHGFR 147 (791)
Q Consensus 121 ~~C---~~~Cs~~G~C~~~~G--~C~C~~G~~ 147 (791)
++| +..|..++.|++..| .|.|++||.
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 567 357988999998788 799999998
No 69
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=89.35 E-value=1.3 Score=48.06 Aligned_cols=91 Identities=10% Similarity=-0.041 Sum_probs=62.6
Q ss_pred hhHHHhhccCeEEEeCC---CCCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--C
Q 003853 629 ENYHEDLSSSVFCGVLP---GDGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--N 703 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~---G~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~ 703 (791)
.++.+.++.+..++.|. +.+++.-++|||.+| +|||.++.-..+ +.+.+.....+.++..+...+.+.+..+ .
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g-~Pvi~~~~~~~~-~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFG-KPVISTEIGTGG-SYVNLHGVTGLVVPPGDPAALAEAIRRLLED 332 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccchHHHHHHHcC-CCEEecCCCCch-hHHhhCCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 45778999999988875 345666799999997 577777643322 1122235666777777877666666554 5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 003853 704 ETEIQFRLANVQKVWQRF 721 (791)
Q Consensus 704 ~~~~~~m~~~~~~~~~~~ 721 (791)
++++.+|+++.++..+.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~ 350 (357)
T cd03795 333 PELRERLGEAARERAEEE 350 (357)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 778889999988766544
No 70
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=89.20 E-value=1.3 Score=49.81 Aligned_cols=90 Identities=11% Similarity=0.122 Sum_probs=59.6
Q ss_pred hHHHhhccCeEEEeCC--CCCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--CHH
Q 003853 630 NYHEDLSSSVFCGVLP--GDGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--NET 705 (791)
Q Consensus 630 ~y~~~l~~S~FCl~p~--G~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~~~ 705 (791)
+..+.|+.+...++|. +.|....++|||.+|+ |||.++.- .+.+..=..-.+.++ .+..++.+.+..+ .++
T Consensus 290 ~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~-PVV~t~~~---~~~i~~~~~~g~lv~-~~~~~la~ai~~ll~~~~ 364 (397)
T TIGR03087 290 DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAK-PVVASPEA---AEGIDALPGAELLVA-ADPADFAAAILALLANPA 364 (397)
T ss_pred CHHHHHHhCCEEEecccccCCcccHHHHHHHcCC-CEEecCcc---cccccccCCcceEeC-CCHHHHHHHHHHHHcCHH
Confidence 5677889999888885 4566667999999997 99998742 122211123345555 5666555555443 466
Q ss_pred HHHHHHHHHHHH-HHhheec
Q 003853 706 EIQFRLANVQKV-WQRFLYR 724 (791)
Q Consensus 706 ~~~~m~~~~~~~-~~~~~~~ 724 (791)
...+|.++.++. .++|-|.
T Consensus 365 ~~~~~~~~ar~~v~~~fsw~ 384 (397)
T TIGR03087 365 EREELGQAARRRVLQHYHWP 384 (397)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 678888888764 4677765
No 71
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=89.20 E-value=0.37 Score=34.81 Aligned_cols=26 Identities=35% Similarity=0.961 Sum_probs=21.2
Q ss_pred CCCCCCceec----CCeeecCCCcc-cCCCC
Q 003853 282 NQCSGHGHCR----GGFCQCDSGWY-GVDCS 307 (791)
Q Consensus 282 ~~Cs~~G~C~----~G~C~C~~G~~-G~~C~ 307 (791)
.+|.++|.|. ...|.|++||. |..|+
T Consensus 9 ~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 9 NPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred CCcCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence 4688888996 23799999999 98885
No 72
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=88.67 E-value=0.27 Score=59.33 Aligned_cols=34 Identities=32% Similarity=0.753 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCCEEecCCCeeeeCCCCcCCCCCcc
Q 003853 120 GKSCKSDCSGQGVCNHELGQCRCFHGFRGKGCSER 154 (791)
Q Consensus 120 ~~~C~~~Cs~~G~C~~~~G~C~C~~G~~G~~Ce~~ 154 (791)
...|+..|+++|+|++ ...|.|.+||.+++|+..
T Consensus 625 ~~~~~~~C~g~GVCnn-~~~ChC~~gwapp~C~~~ 658 (716)
T KOG3607|consen 625 SSCCPTTCNGHGVCNN-ELNCHCEPGWAPPFCFIF 658 (716)
T ss_pred ccccccccCCCcccCC-CcceeeCCCCCCCccccc
Confidence 3455788999999996 789999999999999986
No 73
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=88.67 E-value=1.2 Score=47.92 Aligned_cols=91 Identities=16% Similarity=0.245 Sum_probs=59.3
Q ss_pred hhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--CHH
Q 003853 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--NET 705 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~~~ 705 (791)
.+..+.|..+.+.+.|.- .+++.-++|||.+|+ |||.++.-- ..+++.- ...+.++.++ ..+.+.+..+ .++
T Consensus 273 ~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~-PvI~~~~~~--~~~~~~~-~~~~~~~~~~-~~~~~~i~~l~~~~~ 347 (375)
T cd03821 273 EDKAAALADADLFVLPSHSENFGIVVAEALACGT-PVVTTDKVP--WQELIEY-GCGWVVDDDV-DALAAALRRALELPQ 347 (375)
T ss_pred HHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCC-CEEEcCCCC--HHHHhhc-CceEEeCCCh-HHHHHHHHHHHhCHH
Confidence 467788999999888876 466778999999995 888877432 2333332 4444444432 4444444333 346
Q ss_pred HHHHHHHHHHHH-HHhheec
Q 003853 706 EIQFRLANVQKV-WQRFLYR 724 (791)
Q Consensus 706 ~~~~m~~~~~~~-~~~~~~~ 724 (791)
+.++|.++.++. .++|-|.
T Consensus 348 ~~~~~~~~~~~~~~~~~s~~ 367 (375)
T cd03821 348 RLKAMGENGRALVEERFSWT 367 (375)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 778888888776 6777554
No 74
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=88.60 E-value=0.43 Score=33.94 Aligned_cols=26 Identities=35% Similarity=0.942 Sum_probs=20.8
Q ss_pred CCCCCCceec----CCeeecCCCcccCCCC
Q 003853 282 NQCSGHGHCR----GGFCQCDSGWYGVDCS 307 (791)
Q Consensus 282 ~~Cs~~G~C~----~G~C~C~~G~~G~~C~ 307 (791)
.+|.++|.|. ...|.|.+||.|..|+
T Consensus 9 ~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 9 NPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred CCcCCCCEeECCCCCeEeECCCCCcCCcCC
Confidence 4687788886 3379999999998885
No 75
>KOG3512 consensus Netrin, axonal chemotropic factor [Signal transduction mechanisms]
Probab=87.97 E-value=0.73 Score=51.53 Aligned_cols=59 Identities=27% Similarity=0.539 Sum_probs=40.2
Q ss_pred ccCCCceeeccCCCcccccccCcccCCCC-CCCCCC----CCEEecCCCeeeeCCCCcCCCCCc
Q 003853 95 KAEIGRWLSGCDSVAKEVDLVEMIGGKSC-KSDCSG----QGVCNHELGQCRCFHGFRGKGCSE 153 (791)
Q Consensus 95 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~C-~~~Cs~----~G~C~~~~G~C~C~~G~~G~~Ce~ 153 (791)
+.+.|+.|.-|-.+.....-.+.--.+.| .-+|+- +-+||.++|+|.|.+|-+|..|..
T Consensus 366 HnTaGrhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~tGqCpCkeGvtG~tCnr 429 (592)
T KOG3512|consen 366 HNTAGRHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQTTGQCPCKEGVTGLTCNR 429 (592)
T ss_pred cCCCCcccccccCccccCCCCCCchhhhhhhcCCcccccccccccccCCcccCCCCCccccccc
Confidence 45677777777554443322222223556 445653 558999999999999999999986
No 76
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=87.56 E-value=1.1 Score=49.34 Aligned_cols=72 Identities=8% Similarity=0.019 Sum_probs=50.2
Q ss_pred chhHHHhhccCeEEEeCCCCCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC
Q 003853 628 SENYHEDLSSSVFCGVLPGDGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL 702 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i 702 (791)
..+..+.|+.+...+.|.-.+++.-++|||++|+ |||.++.--. .++|.=.+..+.++..+...|.+.|..+
T Consensus 252 ~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~-Pvi~~~~~~~--~e~i~~~~~G~~~~~~~~~~la~~i~~l 323 (351)
T cd03804 252 DEELRDLYARARAFLFPAEEDFGIVPVEAMASGT-PVIAYGKGGA--LETVIDGVTGILFEEQTVESLAAAVERF 323 (351)
T ss_pred HHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCC-CEEEeCCCCC--cceeeCCCCEEEeCCCCHHHHHHHHHHH
Confidence 3457889999998888765666667899999997 9999875332 3444334557777777776655555444
No 77
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=87.47 E-value=0.79 Score=42.75 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=41.6
Q ss_pred hhHHHhhccCeEEEeCC--CCCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhc
Q 003853 629 ENYHEDLSSSVFCGVLP--GDGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRG 701 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~--G~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~ 701 (791)
.++.+.|+++.+.+.|. +.+.+.+++|+|.+|+ |||.++. ++++.+.-..-.+.+ ..+..++.+.|+.
T Consensus 62 ~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~-pvi~~~~---~~~~~~~~~~~~~~~-~~~~~~l~~~i~~ 131 (135)
T PF13692_consen 62 EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGK-PVIASDN---GAEGIVEEDGCGVLV-ANDPEELAEAIER 131 (135)
T ss_dssp HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT---EEEEHH---HCHCHS---SEEEE--TT-HHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCC-CEEECCc---chhhheeecCCeEEE-CCCHHHHHHHHHH
Confidence 47899999999999986 3455788999999997 5555555 455555446666666 6676666665543
No 78
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=87.43 E-value=1.3 Score=47.61 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=60.5
Q ss_pred chhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcCC-HH
Q 003853 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGLN-ET 705 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i~-~~ 705 (791)
..+..+.|.++.+.+.|.. ++++..++|||.+|+ |||.++.-. ..+++.-....+.+...+..+|.+.|..+- ..
T Consensus 269 ~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~-pvI~~~~~~--~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 269 HEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGL-PVVATDVGG--IPEIITDGENGLLVPPGDPEALAEAILRLLADP 345 (377)
T ss_pred HHHHHHHHHhcCeeecchhhccCChHHHHHHhcCC-CEEEecCCC--hHHHhcCCcceeEECCCCHHHHHHHHHHHhcCc
Confidence 3567899999999998876 456778999999998 677765422 234455555556777777776655555432 22
Q ss_pred HHHHHHHHHHHHHHhheec
Q 003853 706 EIQFRLANVQKVWQRFLYR 724 (791)
Q Consensus 706 ~~~~m~~~~~~~~~~~~~~ 724 (791)
+...++++.+.+.++|-|.
T Consensus 346 ~~~~~~~~~~~~~~~~s~~ 364 (377)
T cd03798 346 WLRLGRAARRRVAERFSWE 364 (377)
T ss_pred HHHHhHHHHHHHHHHhhHH
Confidence 2233444445555666553
No 79
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=87.42 E-value=1.8 Score=48.58 Aligned_cols=93 Identities=11% Similarity=0.091 Sum_probs=60.6
Q ss_pred hhHHHhhccCeEEEeCCC--CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEE-EEecCCChhhHHHHHhc-CCH
Q 003853 629 ENYHEDLSSSVFCGVLPG--DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFV-VRISEDEIPNLINILRG-LNE 704 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G--~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~s-v~i~~~~~~~l~~~L~~-i~~ 704 (791)
.+..+.|+.|..+++|.. .+++.-++|||++| +|||.++.-- ..+++.=.... +.++..+...|.+.|.. +.+
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G-~PVI~s~~gg--~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAG-KPVLASTKGG--ITEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccHHHHHHHcC-CCEEEeCCCC--cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 467788999999998874 45666799999999 8999988533 33444323333 24455666655555533 233
Q ss_pred HHHHHHHHHHHH-HHHhheec
Q 003853 705 TEIQFRLANVQK-VWQRFLYR 724 (791)
Q Consensus 705 ~~~~~m~~~~~~-~~~~~~~~ 724 (791)
.+..+|.++.++ +.++|-|.
T Consensus 345 ~~~~~~~~~ar~~~~~~fsw~ 365 (380)
T PRK15484 345 PELTQIAEQAKDFVFSKYSWE 365 (380)
T ss_pred HHHHHHHHHHHHHHHHhCCHH
Confidence 445677777764 56777664
No 80
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=87.39 E-value=0.32 Score=43.88 Aligned_cols=37 Identities=43% Similarity=1.031 Sum_probs=28.0
Q ss_pred CCCCCCCceecCC---------eeecCC-------------CcccCCCCCccccccCCCCCCCC
Q 003853 281 VNQCSGHGHCRGG---------FCQCDS-------------GWYGVDCSIPSVMSSMSEWPQWL 322 (791)
Q Consensus 281 ~~~Cs~~G~C~~G---------~C~C~~-------------G~~G~~C~~~~~~~~~~~~p~wl 322 (791)
.+.|++||.|... .|+|.+ .|.|..|+-..... |.||
T Consensus 12 Tn~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKkDvS~-----~F~L 70 (103)
T PF12955_consen 12 TNNCSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKKDVSV-----PFWL 70 (103)
T ss_pred ccCCCCCceEeeccCCCccceEEEEeeccccccccccCceeeecccccccccccc-----hhhH
Confidence 3689999999721 799987 78899998865543 5665
No 81
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=87.34 E-value=0.22 Score=41.06 Aligned_cols=37 Identities=30% Similarity=0.651 Sum_probs=21.0
Q ss_pred ccCcccCCCCCCCC------CCCCEEecCCCeeeeCCCCcCCCC
Q 003853 114 LVEMIGGKSCKSDC------SGQGVCNHELGQCRCFHGFRGKGC 151 (791)
Q Consensus 114 ~~~~~~~~~C~~~C------s~~G~C~~~~G~C~C~~G~~G~~C 151 (791)
|.+..-+..|...| .+|-+|+. +|.-+|.+||+|++|
T Consensus 21 C~~nyyG~~C~~~C~~~~d~~ghy~Cd~-~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 21 CDENYYGPNCSKFCKPRDDSFGHYTCDS-NGNKVCLPGWTGPNC 63 (63)
T ss_dssp --TTEETTTT-EE---EEETTEEEEE-S-S--EEE-TTEESTTS
T ss_pred CCCCCCCccccCCcCCCcCCcCCcccCC-CCCCCCCCCCcCCCC
Confidence 33334445554444 45779994 999999999999998
No 82
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=87.22 E-value=0.53 Score=32.86 Aligned_cols=26 Identities=38% Similarity=0.912 Sum_probs=20.6
Q ss_pred CCCCCCceec----CCeeecCCCcccC-CCC
Q 003853 282 NQCSGHGHCR----GGFCQCDSGWYGV-DCS 307 (791)
Q Consensus 282 ~~Cs~~G~C~----~G~C~C~~G~~G~-~C~ 307 (791)
.+|.+++.|. ...|.|+.||.|. .|+
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~~~C~ 36 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTGDRSCE 36 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCcccCCcC
Confidence 5677788886 3489999999998 664
No 83
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=87.13 E-value=0.47 Score=37.03 Aligned_cols=20 Identities=30% Similarity=0.830 Sum_probs=17.1
Q ss_pred eec--CCeeecCCCcccCCCCC
Q 003853 289 HCR--GGFCQCDSGWYGVDCSI 308 (791)
Q Consensus 289 ~C~--~G~C~C~~G~~G~~C~~ 308 (791)
.|+ +|.|.|++||.|..|++
T Consensus 13 ~C~~~~G~C~C~~~~~G~~C~~ 34 (50)
T cd00055 13 QCDPGTGQCECKPNTTGRRCDR 34 (50)
T ss_pred cccCCCCEEeCCCcCCCCCCCC
Confidence 364 78999999999999995
No 84
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=87.01 E-value=4.5 Score=46.03 Aligned_cols=86 Identities=19% Similarity=0.126 Sum_probs=56.0
Q ss_pred chhHHHhhccCeEEEeCC----CCCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC-
Q 003853 628 SENYHEDLSSSVFCGVLP----GDGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL- 702 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~----G~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i- 702 (791)
..++.+.|+.+...+.+. |.++...++|||.+|. |||.++.-. ..++|.=..-.+.++ +..+|.+.|..+
T Consensus 305 ~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~-PVI~s~~~~--~~eiv~~~~~G~lv~--d~~~la~~i~~ll 379 (415)
T cd03816 305 AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGL-PVCALDFKC--IDELVKHGENGLVFG--DSEELAEQLIDLL 379 (415)
T ss_pred HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCC-CEEEeCCCC--HHHHhcCCCCEEEEC--CHHHHHHHHHHHH
Confidence 467888999999877532 3345667999999998 999987532 234553333344443 555554444333
Q ss_pred ----CHHHHHHHHHHHHHHH
Q 003853 703 ----NETEIQFRLANVQKVW 718 (791)
Q Consensus 703 ----~~~~~~~m~~~~~~~~ 718 (791)
++++..+|.++.++..
T Consensus 380 ~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 380 SNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred hcCCCHHHHHHHHHHHHHhh
Confidence 2678888988887655
No 85
>PHA02887 EGF-like protein; Provisional
Probab=86.86 E-value=0.38 Score=43.85 Aligned_cols=25 Identities=36% Similarity=1.091 Sum_probs=20.8
Q ss_pred CCCCceec------CCeeecCCCcccCCCCCc
Q 003853 284 CSGHGHCR------GGFCQCDSGWYGVDCSIP 309 (791)
Q Consensus 284 Cs~~G~C~------~G~C~C~~G~~G~~C~~~ 309 (791)
|- ||+|. .-.|.|+.||+|..|+.-
T Consensus 94 Ci-HG~C~yI~dL~epsCrC~~GYtG~RCE~v 124 (126)
T PHA02887 94 CI-NGECMNIIDLDEKFCICNKGYTGIRCDEV 124 (126)
T ss_pred ee-CCEEEccccCCCceeECCCCcccCCCCcc
Confidence 54 68996 459999999999999874
No 86
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=86.81 E-value=1.7 Score=49.86 Aligned_cols=92 Identities=11% Similarity=0.132 Sum_probs=60.0
Q ss_pred hHHHhhccC-----eEEEeCCCCCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--
Q 003853 630 NYHEDLSSS-----VFCGVLPGDGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL-- 702 (791)
Q Consensus 630 ~y~~~l~~S-----~FCl~p~G~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i-- 702 (791)
+..+.|+.+ -|++-..-.+++.-++|||.+|+ |||.++.- ...++|+=.+-.+.++..|...|.+.++.+
T Consensus 329 ~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~-PvV~s~~g--g~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~ 405 (439)
T TIGR02472 329 DVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGL-PIVATDDG--GPRDIIANCRNGLLVDVLDLEAIASALEDALS 405 (439)
T ss_pred HHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCC-CEEEeCCC--CcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 334455543 45443333466677999999999 99999853 244666555667778888877666655443
Q ss_pred CHHHHHHHHHHHHH-HHHhheec
Q 003853 703 NETEIQFRLANVQK-VWQRFLYR 724 (791)
Q Consensus 703 ~~~~~~~m~~~~~~-~~~~~~~~ 724 (791)
++++..+|.++.++ +.++|-|.
T Consensus 406 ~~~~~~~~~~~a~~~~~~~fsw~ 428 (439)
T TIGR02472 406 DSSQWQLWSRNGIEGVRRHYSWD 428 (439)
T ss_pred CHHHHHHHHHHHHHHHHHhCCHH
Confidence 45666777777764 55677664
No 87
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=86.76 E-value=2 Score=46.15 Aligned_cols=91 Identities=12% Similarity=0.049 Sum_probs=60.2
Q ss_pred chhHHHhhccCeEEEeCCCC-CCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--CH
Q 003853 628 SENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--NE 704 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G~-~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~~ 704 (791)
..+..+.|+.+.+.+.|... +++.-++|||.+|+ |||.++.-.. .+.++= ..+.++..+..++.+.+..+ .+
T Consensus 259 ~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~-PvI~~~~~~~--~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 259 RSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGL-PVVATDVGDN--AELVGD--TGFLVPPGDPEALAEAIEALLADP 333 (365)
T ss_pred cccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCC-CEEEcCCCCh--HHHhhc--CCEEeCCCCHHHHHHHHHHHHhCh
Confidence 34678899999999988764 56777999999995 8888764222 233322 55666766766665555544 34
Q ss_pred HHHHHHHHHHHHHH-Hhhee
Q 003853 705 TEIQFRLANVQKVW-QRFLY 723 (791)
Q Consensus 705 ~~~~~m~~~~~~~~-~~~~~ 723 (791)
+++.+|.++.++.. ++|-|
T Consensus 334 ~~~~~~~~~~~~~~~~~~s~ 353 (365)
T cd03807 334 ALRQALGEAARERIEENFSI 353 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCH
Confidence 66777777776544 45544
No 88
>PRK10307 putative glycosyl transferase; Provisional
Probab=86.24 E-value=1.4 Score=49.68 Aligned_cols=94 Identities=9% Similarity=0.017 Sum_probs=66.2
Q ss_pred chhHHHhhccCeEEEeCCCCC-----CchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC
Q 003853 628 SENYHEDLSSSVFCGVLPGDG-----WSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL 702 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G~~-----~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i 702 (791)
..+..+.|+.+...++|.=.. ....++|||++| +|||.++.--..+.+++. .-.+.++..+..+|.+.|..+
T Consensus 294 ~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G-~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l 370 (412)
T PRK10307 294 YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASG-RNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAAL 370 (412)
T ss_pred HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcC-CCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHH
Confidence 356788999999888764321 234589999999 799998743333445666 467777888888888877765
Q ss_pred --CHHHHHHHHHHHHHHH-Hhheec
Q 003853 703 --NETEIQFRLANVQKVW-QRFLYR 724 (791)
Q Consensus 703 --~~~~~~~m~~~~~~~~-~~~~~~ 724 (791)
+++...+|+++.++.. ++|-|.
T Consensus 371 ~~~~~~~~~~~~~a~~~~~~~fs~~ 395 (412)
T PRK10307 371 ARQALLRPKLGTVAREYAERTLDKE 395 (412)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCHH
Confidence 4567788988888744 467554
No 89
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=86.12 E-value=2.4 Score=46.04 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=57.6
Q ss_pred hhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC---CH
Q 003853 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL---NE 704 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i---~~ 704 (791)
.+..+.|+.+.+-+.|.. ++++..++|||.+|+ |||.+|.-. ..+++.= ....++..+...+.+.+..+ ++
T Consensus 254 ~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~-PvI~~~~~~--~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~~ 328 (360)
T cd04951 254 DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACEL-PVVATDAGG--VREVVGD--SGLIVPISDPEALANKIDEILKMSG 328 (360)
T ss_pred ccHHHHHHhhceEEecccccCCChHHHHHHHcCC-CEEEecCCC--hhhEecC--CceEeCCCCHHHHHHHHHHHHhCCH
Confidence 456788999998777765 356777999999999 888876422 2333321 34455566766555555443 45
Q ss_pred HHHHHHHHHHHHHHHhheec
Q 003853 705 TEIQFRLANVQKVWQRFLYR 724 (791)
Q Consensus 705 ~~~~~m~~~~~~~~~~~~~~ 724 (791)
+....|.+.-..+.+.|-|.
T Consensus 329 ~~~~~~~~~~~~~~~~~s~~ 348 (360)
T cd04951 329 EERDIIGARRERIVKKFSIN 348 (360)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 55556666544455666553
No 90
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=86.07 E-value=2 Score=46.28 Aligned_cols=69 Identities=12% Similarity=0.006 Sum_probs=46.5
Q ss_pred hhHHHhhccCeEEEeCCC--CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC
Q 003853 629 ENYHEDLSSSVFCGVLPG--DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL 702 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G--~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i 702 (791)
.+..+.|+.+.+++.|.- ++++..++|||.+|+ |||.+|.--+ .++++=..-.+.++. ..++.+.|+.+
T Consensus 235 ~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~-PvI~~~~~~~--~e~i~~~~~g~l~~~--~~~l~~~l~~l 305 (335)
T cd03802 235 AEKAELLGNARALLFPILWEEPFGLVMIEAMACGT-PVIAFRRGAV--PEVVEDGVTGFLVDS--VEELAAAVARA 305 (335)
T ss_pred HHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCC-CEEEeCCCCc--hhheeCCCcEEEeCC--HHHHHHHHHHH
Confidence 456788999999999864 566777999999996 9999886433 345443333334443 55555555544
No 91
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=85.91 E-value=0.46 Score=36.83 Aligned_cols=20 Identities=35% Similarity=0.866 Sum_probs=16.6
Q ss_pred eec--CCeeecCCCcccCCCCC
Q 003853 289 HCR--GGFCQCDSGWYGVDCSI 308 (791)
Q Consensus 289 ~C~--~G~C~C~~G~~G~~C~~ 308 (791)
.|+ .|.|.|+++|.|..|++
T Consensus 12 ~C~~~~G~C~C~~~~~G~~C~~ 33 (49)
T PF00053_consen 12 TCDPSTGQCVCKPGTTGPRCDQ 33 (49)
T ss_dssp SEEETCEEESBSTTEESTTS-E
T ss_pred cccCCCCEEeccccccCCcCcC
Confidence 564 78999999999999997
No 92
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=85.30 E-value=0.66 Score=41.88 Aligned_cols=31 Identities=32% Similarity=0.993 Sum_probs=24.1
Q ss_pred CCCCCCCCEEecCC----C---eeeeCC-------------CCcCCCCCcc
Q 003853 124 KSDCSGQGVCNHEL----G---QCRCFH-------------GFRGKGCSER 154 (791)
Q Consensus 124 ~~~Cs~~G~C~~~~----G---~C~C~~-------------G~~G~~Ce~~ 154 (791)
.++|++||.|.... + .|.|.+ .|.|+.|+..
T Consensus 12 Tn~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKk 62 (103)
T PF12955_consen 12 TNNCSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKK 62 (103)
T ss_pred ccCCCCCceEeeccCCCccceEEEEeeccccccccccCceeeecccccccc
Confidence 47899999998642 1 689998 5778888875
No 93
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=84.96 E-value=0.45 Score=37.49 Aligned_cols=29 Identities=45% Similarity=0.927 Sum_probs=17.1
Q ss_pred CCCCCCceec------CC--eeecCCCcccCCCCCcc
Q 003853 282 NQCSGHGHCR------GG--FCQCDSGWYGVDCSIPS 310 (791)
Q Consensus 282 ~~Cs~~G~C~------~G--~C~C~~G~~G~~C~~~~ 310 (791)
-.|+|||..- +| .|.|..-|.|++|++..
T Consensus 17 i~CSGHGr~flDg~~~dG~p~CECn~Cy~GpdCS~~~ 53 (56)
T PF04863_consen 17 ISCSGHGRAFLDGLIADGSPVCECNSCYGGPDCSTLI 53 (56)
T ss_dssp S--TTSEE--TTS-EETTEE--EE-TTEESTTS-EE-
T ss_pred CCcCCCCeeeeccccccCCccccccCCcCCCCcccCC
Confidence 4799999985 33 79999999999999864
No 94
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=84.63 E-value=3.5 Score=45.77 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=58.7
Q ss_pred hhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCC-h-hhHHHHHhcCCHH
Q 003853 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDE-I-PNLINILRGLNET 705 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~-~-~~l~~~L~~i~~~ 705 (791)
.+..+.++.+...+.|.- +++..-++|||.+| +|||.++.-.++ ++|.-....+.++..+ + ..|..+|. +++
T Consensus 265 ~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G-~Pvv~s~~~~~~--~~i~~~~~g~~~~~~~~~a~~i~~ll~--~~~ 339 (372)
T cd03792 265 LEVNALQRASTVVLQKSIREGFGLTVTEALWKG-KPVIAGPVGGIP--LQIEDGETGFLVDTVEEAAVRILYLLR--DPE 339 (372)
T ss_pred HHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcC-CCEEEcCCCCch--hhcccCCceEEeCCcHHHHHHHHHHHc--CHH
Confidence 556788889998887764 46677899999999 799998754333 3333333333444222 2 23444443 466
Q ss_pred HHHHHHHHHHHH-HHhheec
Q 003853 706 EIQFRLANVQKV-WQRFLYR 724 (791)
Q Consensus 706 ~~~~m~~~~~~~-~~~~~~~ 724 (791)
...+|.++.++. .++|-|.
T Consensus 340 ~~~~~~~~a~~~~~~~~s~~ 359 (372)
T cd03792 340 LRRKMGANAREHVRENFLIT 359 (372)
T ss_pred HHHHHHHHHHHHHHHHcCHH
Confidence 778898888774 4677664
No 95
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=84.44 E-value=2.8 Score=46.31 Aligned_cols=94 Identities=13% Similarity=0.172 Sum_probs=65.3
Q ss_pred hhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--CHH
Q 003853 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--NET 705 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~~~ 705 (791)
.+..+.|+++...+.|.- .+++.-+.|||.+|+ |||.++.-.-| .++|.=.+..+.++..+..+|.+.|..+ .++
T Consensus 270 ~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~-PvI~~~~~~g~-~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~ 347 (372)
T cd04949 270 RDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGL-PVISYDVNYGP-SEIIEDGENGYLVPKGDIEALAEAIIELLNDPK 347 (372)
T ss_pred CCHHHHHhhhhEEEecccccccChHHHHHHhCCC-CEEEecCCCCc-HHHcccCCCceEeCCCcHHHHHHHHHHHHcCHH
Confidence 456788888998887764 356777999999998 78876532112 2344444566677777776666655543 467
Q ss_pred HHHHHHHHHHHHHHhheec
Q 003853 706 EIQFRLANVQKVWQRFLYR 724 (791)
Q Consensus 706 ~~~~m~~~~~~~~~~~~~~ 724 (791)
.+.+|+++.++..++|.|.
T Consensus 348 ~~~~~~~~a~~~~~~~s~~ 366 (372)
T cd04949 348 LLQKFSEAAYENAERYSEE 366 (372)
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 8889999998888887654
No 96
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=83.80 E-value=3.4 Score=45.86 Aligned_cols=94 Identities=15% Similarity=0.000 Sum_probs=62.3
Q ss_pred chhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCCh------hhHHHHHh
Q 003853 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEI------PNLINILR 700 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~------~~l~~~L~ 700 (791)
..+..+.|+.|...+.|.- ++.+.-++|||.+|+ |||.++.-. ..++|.=....+.++..+. ..|.+.|.
T Consensus 271 ~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~-PvI~s~~~~--~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~ 347 (388)
T TIGR02149 271 KEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGT-PVVASATGG--IPEVVVDGETGFLVPPDNSDADGFQAELAKAIN 347 (388)
T ss_pred HHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCC-CEEEeCCCC--HHHHhhCCCceEEcCCCCCcccchHHHHHHHHH
Confidence 4567888999998888754 344556899999998 899887532 3344543445566666555 55555554
Q ss_pred cC--CHHHHHHHHHHHHHHH-Hhheec
Q 003853 701 GL--NETEIQFRLANVQKVW-QRFLYR 724 (791)
Q Consensus 701 ~i--~~~~~~~m~~~~~~~~-~~~~~~ 724 (791)
.+ ++++..+|.++.++.. ++|-|.
T Consensus 348 ~l~~~~~~~~~~~~~a~~~~~~~~s~~ 374 (388)
T TIGR02149 348 ILLADPELAKKMGIAGRKRAEEEFSWG 374 (388)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 43 5677788888877643 566553
No 97
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=83.75 E-value=3.8 Score=45.51 Aligned_cols=92 Identities=13% Similarity=-0.013 Sum_probs=57.7
Q ss_pred hhHHHhhccCeEEEeCCCC-CCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--CHH
Q 003853 629 ENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--NET 705 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G~-~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~~~ 705 (791)
.+..+.|+.+.+.+.|... +++.-++|||.+| +|||.++.-- + .++|.-..-.+.++. +...+.+.+..+ .++
T Consensus 291 ~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G-~PvI~s~~~~-~-~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~~~ 366 (392)
T cd03805 291 SQKELLLSSARALLYTPSNEHFGIVPLEAMYAG-KPVIACNSGG-P-LETVVDGETGFLCEP-TPEEFAEAMLKLANDPD 366 (392)
T ss_pred HHHHHHHhhCeEEEECCCcCCCCchHHHHHHcC-CCEEEECCCC-c-HHHhccCCceEEeCC-CHHHHHHHHHHHHhChH
Confidence 4457889999999887653 5555689999999 7888877432 2 233333333444554 555554444433 345
Q ss_pred HHHHHHHHHHHH-HHhheec
Q 003853 706 EIQFRLANVQKV-WQRFLYR 724 (791)
Q Consensus 706 ~~~~m~~~~~~~-~~~~~~~ 724 (791)
...+|+++.++. .++|-|.
T Consensus 367 ~~~~~~~~a~~~~~~~~s~~ 386 (392)
T cd03805 367 LADRMGAAGRKRVKEKFSTE 386 (392)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 678888877664 4666553
No 98
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=82.06 E-value=5 Score=45.75 Aligned_cols=92 Identities=15% Similarity=0.061 Sum_probs=57.8
Q ss_pred chhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCC---CCcEEEEecCCChhhHHHHHhc--
Q 003853 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLN---YESFVVRISEDEIPNLINILRG-- 701 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~id---w~~~sv~i~~~~~~~l~~~L~~-- 701 (791)
..+..+.|+.|...+.+.= .+++.-++|||++||+||. ++. --|.++++. -..-.+.+. +..++.+.+..
T Consensus 315 ~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa-~~~-ggp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll 390 (419)
T cd03806 315 FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLA-HAS-GGPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKIL 390 (419)
T ss_pred HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEE-EcC-CCCchheeeccCCCCceEEeC--CHHHHHHHHHHHH
Confidence 3567899999999888764 4567779999999996665 442 135566664 222333332 44433333322
Q ss_pred -CCHHHHHHHHHHHHHHHHhhee
Q 003853 702 -LNETEIQFRLANVQKVWQRFLY 723 (791)
Q Consensus 702 -i~~~~~~~m~~~~~~~~~~~~~ 723 (791)
.++++...|+++-+++.++|-+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~fs~ 413 (419)
T cd03806 391 SLSEEERLRIRRAARSSVKRFSD 413 (419)
T ss_pred hCCHHHHHHHHHHHHHHHHhhCH
Confidence 2555666677777777787755
No 99
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=81.40 E-value=0.91 Score=33.01 Aligned_cols=26 Identities=31% Similarity=0.908 Sum_probs=19.0
Q ss_pred CCCCCCCEEecCCC--eeeeCCCCcCCC
Q 003853 125 SDCSGQGVCNHELG--QCRCFHGFRGKG 150 (791)
Q Consensus 125 ~~Cs~~G~C~~~~G--~C~C~~G~~G~~ 150 (791)
..|..+.+|....+ +|.|++||.|+.
T Consensus 6 ~~C~~nA~C~~~~~~~~C~C~~Gy~GdG 33 (36)
T PF12947_consen 6 GGCHPNATCTNTGGSYTCTCKPGYEGDG 33 (36)
T ss_dssp GGS-TTCEEEE-TTSEEEEE-CEEECCS
T ss_pred CCCCCCcEeecCCCCEEeECCCCCccCC
Confidence 46888999987555 799999999874
No 100
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=80.86 E-value=7 Score=42.04 Aligned_cols=91 Identities=12% Similarity=0.058 Sum_probs=59.7
Q ss_pred chhHHHhhccCeEEEeCCCC-CCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--CH
Q 003853 628 SENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--NE 704 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G~-~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~~ 704 (791)
..+..+.|+.|.+.+.|... +.+..++|||.+|+ |||.++.- .+.+.+.=..-.+.++..+. ++.+.+..+ .+
T Consensus 269 ~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~-PvI~~~~~--~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~ 344 (374)
T cd03817 269 REELPDYYKAADLFVFASTTETQGLVLLEAMAAGL-PVVAVDAP--GLPDLVADGENGFLFPPGDE-ALAEALLRLLQDP 344 (374)
T ss_pred hHHHHHHHHHcCEEEecccccCcChHHHHHHHcCC-cEEEeCCC--ChhhheecCceeEEeCCCCH-HHHHHHHHHHhCh
Confidence 35678899999999988753 55677999999975 66666532 23444444455566665553 333333332 34
Q ss_pred HHHHHHHHHHHHHHHhhe
Q 003853 705 TEIQFRLANVQKVWQRFL 722 (791)
Q Consensus 705 ~~~~~m~~~~~~~~~~~~ 722 (791)
+...+|+++.++..+++.
T Consensus 345 ~~~~~~~~~~~~~~~~~~ 362 (374)
T cd03817 345 ELRRRLSKNAEESAEKFS 362 (374)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556788888888777765
No 101
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=80.73 E-value=1.7 Score=33.30 Aligned_cols=16 Identities=31% Similarity=1.024 Sum_probs=9.0
Q ss_pred cCccccCCCCCCCcccc
Q 003853 257 KEECDCKYDGLLGQFCE 273 (791)
Q Consensus 257 ~g~C~C~~~G~~G~~Ce 273 (791)
+++|.|+ ++++|..|+
T Consensus 17 ~G~C~C~-~~~~G~~C~ 32 (46)
T smart00180 17 TGQCECK-PNVTGRRCD 32 (46)
T ss_pred CCEEECC-CCCCCCCCC
Confidence 4555555 555555554
No 102
>smart00181 EGF Epidermal growth factor-like domain.
Probab=80.33 E-value=1.4 Score=31.02 Aligned_cols=25 Identities=32% Similarity=0.852 Sum_probs=18.7
Q ss_pred CCCCCCceec----CCeeecCCCccc-CCCC
Q 003853 282 NQCSGHGHCR----GGFCQCDSGWYG-VDCS 307 (791)
Q Consensus 282 ~~Cs~~G~C~----~G~C~C~~G~~G-~~C~ 307 (791)
++|.++ .|. ...|.|++||.| ..|+
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~~~C~ 35 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTGDKRCE 35 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCccCCccC
Confidence 356666 775 348999999999 7764
No 103
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=79.52 E-value=7.1 Score=41.38 Aligned_cols=90 Identities=14% Similarity=0.102 Sum_probs=58.0
Q ss_pred hhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhH----HHHHhcCC
Q 003853 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNL----INILRGLN 703 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l----~~~L~~i~ 703 (791)
.+..+.|+.+.+.+.|.- ++++..++|||.+|+. ||.++.- ...+++.=....+.++.++...+ ..++....
T Consensus 255 ~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~P-vI~~~~~--~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~ 331 (353)
T cd03811 255 SNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTP-VVATDCP--GPREILEDGENGLLVPVGDEAALAAAALALLDLLL 331 (353)
T ss_pred CCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCC-EEEcCCC--ChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccC
Confidence 456788999999998865 4566779999999975 5555543 33455655666777888887765 33333333
Q ss_pred -HHHHHHHHH-HHHHHHHhh
Q 003853 704 -ETEIQFRLA-NVQKVWQRF 721 (791)
Q Consensus 704 -~~~~~~m~~-~~~~~~~~~ 721 (791)
++...+|.+ +.+.+.++|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~ 351 (353)
T cd03811 332 DPELRERLAAAARERVAREY 351 (353)
T ss_pred ChHHHHHHHHHHHHHHHHHh
Confidence 445566666 444444444
No 104
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=79.44 E-value=7.9 Score=41.88 Aligned_cols=93 Identities=10% Similarity=0.014 Sum_probs=62.3
Q ss_pred chhHHHhhccCeEEEeCCC-------CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHh
Q 003853 628 SENYHEDLSSSVFCGVLPG-------DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILR 700 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G-------~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~ 700 (791)
..+..+.|+++.+.+.|.- ++++..++|||.+|+-.| .++.- .+.+++.=..-.+.+++.+..++.+.|.
T Consensus 246 ~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi-~~~~~--~~~~~i~~~~~g~~~~~~~~~~l~~~i~ 322 (355)
T cd03799 246 QEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVI-STDVS--GIPELVEDGETGLLVPPGDPEALADAIE 322 (355)
T ss_pred hHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEE-ecCCC--CcchhhhCCCceEEeCCCCHHHHHHHHH
Confidence 3567889999999998764 455677999999997555 45432 2345554444566777767766655555
Q ss_pred cC--CHHHHHHHHHHHHHHH-Hhhee
Q 003853 701 GL--NETEIQFRLANVQKVW-QRFLY 723 (791)
Q Consensus 701 ~i--~~~~~~~m~~~~~~~~-~~~~~ 723 (791)
.+ .+++..+|.++.++.. .+|-|
T Consensus 323 ~~~~~~~~~~~~~~~a~~~~~~~~s~ 348 (355)
T cd03799 323 RLLDDPELRREMGEAGRARVEEEFDI 348 (355)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhcCH
Confidence 44 4566788888877544 55644
No 105
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=79.32 E-value=6.2 Score=45.76 Aligned_cols=91 Identities=14% Similarity=0.042 Sum_probs=62.9
Q ss_pred chhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCC------CcEEEEecCCChhhHHHHHh
Q 003853 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNY------ESFVVRISEDEIPNLINILR 700 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw------~~~sv~i~~~~~~~l~~~L~ 700 (791)
..+..+.|+.+...+.|.- .++..-++|||.+|+ |||.+|.-- ..++++= ....+.++..+...|.+.+.
T Consensus 361 ~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~-PVVatd~g~--~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~ 437 (475)
T cd03813 361 FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGI-PVVATDVGS--CRELIEGADDEALGPAGEVVPPADPEALARAIL 437 (475)
T ss_pred CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCC-CEEECCCCC--hHHHhcCCcccccCCceEEECCCCHHHHHHHHH
Confidence 4567788888888877653 355677999999998 888876422 2333332 24677788888776666655
Q ss_pred cC--CHHHHHHHHHHHHHHHHhh
Q 003853 701 GL--NETEIQFRLANVQKVWQRF 721 (791)
Q Consensus 701 ~i--~~~~~~~m~~~~~~~~~~~ 721 (791)
.+ +++...+|.++.++..+.+
T Consensus 438 ~ll~~~~~~~~~~~~a~~~v~~~ 460 (475)
T cd03813 438 RLLKDPELRRAMGEAGRKRVERY 460 (475)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHh
Confidence 54 5677888988887655554
No 106
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=78.52 E-value=6.8 Score=44.42 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=56.7
Q ss_pred hhHHHhhccCe---EEEeCCCCCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecC-CChhhHHHHHhcC--
Q 003853 629 ENYHEDLSSSV---FCGVLPGDGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISE-DEIPNLINILRGL-- 702 (791)
Q Consensus 629 ~~y~~~l~~S~---FCl~p~G~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~-~~~~~l~~~L~~i-- 702 (791)
.+..+.++.+. |.+.....+.+.-++|||++| +|||.++.--. .++|+=..-.+.++. .+..+|.+.|..+
T Consensus 300 ~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G-~PVIas~vgg~--~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~ 376 (407)
T cd04946 300 SEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFG-IPVIATNVGGT--PEIVDNGGNGLLLSKDPTPNELVSSLSKFID 376 (407)
T ss_pred HHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcC-CCEEeCCCCCc--HHHhcCCCcEEEeCCCCCHHHHHHHHHHHHh
Confidence 34556665432 333333346667799999999 59999874333 355554444555554 3555555555443
Q ss_pred CHHHHHHHHHHHHHHHH-hhe
Q 003853 703 NETEIQFRLANVQKVWQ-RFL 722 (791)
Q Consensus 703 ~~~~~~~m~~~~~~~~~-~~~ 722 (791)
++++..+|+++.++.++ +|-
T Consensus 377 ~~~~~~~m~~~ar~~~~~~f~ 397 (407)
T cd04946 377 NEEEYQTMREKAREKWEENFN 397 (407)
T ss_pred CHHHHHHHHHHHHHHHHHHcC
Confidence 57888999999887764 453
No 107
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=77.99 E-value=21 Score=37.97 Aligned_cols=144 Identities=13% Similarity=0.142 Sum_probs=86.0
Q ss_pred CccCCceEEEeecCCCCCCCCCCCCCCcchhHHHHHHHHhcCCCCCc-cccCccc-CcceE--Eec--CCchhHHHhhcc
Q 003853 564 PREKRKTLFYFNGNLGSAYPNGRPESSYSMGVRQKLAEEYGSSPNKE-GKLGKQH-AEDVI--VTS--LRSENYHEDLSS 637 (791)
Q Consensus 564 ~~~~R~~L~~F~G~~~~~~~~~~~~~~ys~~iR~~L~~~~~~~~~~~-~~~g~~~-~~~~~--~~~--~~~~~y~~~l~~ 637 (791)
+=++|.-.++|+|+.. ++..|+.|++...+.++.. ....... ..+.. ... .... =++...+
T Consensus 79 pW~~K~~~a~WRG~~~------------~~~~R~~Lv~~~~~~p~~~da~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 145 (256)
T smart00672 79 KWSDKNAYAYWRGNPT------------VASERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKS-PLEEQCK 145 (256)
T ss_pred CccccCcCccccCCCC------------CCcchHHHHHHhcCCcccceeEEEEecCCCCChHHhcccCcCCC-CHHHHhh
Confidence 3456778899999863 1228999999876654321 0000000 00000 000 0111 2455667
Q ss_pred CeEEEeCCCCCCchhHHHHHhhCCeeEEEecccccCCcc-cCCCCcEEEEecC--CC--hhhHHHHHhcCCHHHHHHHHH
Q 003853 638 SVFCGVLPGDGWSGRMEDSILQGCIPVVIQDGIFLPYEN-VLNYESFVVRISE--DE--IPNLINILRGLNETEIQFRLA 712 (791)
Q Consensus 638 S~FCl~p~G~~~s~R~~dal~~GCIPVii~d~~~lPf~~-~idw~~~sv~i~~--~~--~~~l~~~L~~i~~~~~~~m~~ 712 (791)
.||=+..-|.++|.||.=-|.++.|++.....|..=|.+ ..+|.-|.- |.. ++ |.+..+.+++ .+++.+++-+
T Consensus 146 yKyli~~dG~~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvP-v~~d~sd~~l~~~i~~~~~-~~~~a~~Ia~ 223 (256)
T smart00672 146 HKYKINIEGVAWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWP-IKSDLSCRELKEAVDWGNE-HDKKAQEIGK 223 (256)
T ss_pred cceEEecCCccchhhHHHHHhcCceEEEeCCchhHHHHhcccCccceEE-eeCCCchhhHHHHHHHHHh-CHHHHHHHHH
Confidence 899999999999999999999999999987554433443 355666532 222 23 5555555544 4566667777
Q ss_pred HHHHHHHhhe
Q 003853 713 NVQKVWQRFL 722 (791)
Q Consensus 713 ~~~~~~~~~~ 722 (791)
+.++..+.++
T Consensus 224 ~~~~~~~~~L 233 (256)
T smart00672 224 RGSEFIQQNL 233 (256)
T ss_pred HHHHHHHHHc
Confidence 7777666654
No 108
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=77.82 E-value=3.9 Score=45.31 Aligned_cols=91 Identities=9% Similarity=0.153 Sum_probs=57.1
Q ss_pred hHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcCCHH---
Q 003853 630 NYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGLNET--- 705 (791)
Q Consensus 630 ~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i~~~--- 705 (791)
.+.+.++.+...+.|.- .+++.-++|||++| +|||.++...-+ .++|.=..-.+.++..+..++.+.|..+-..
T Consensus 250 ~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G-~Pvv~s~~~~g~-~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~ 327 (359)
T PRK09922 250 VVQQKIKNVSALLLTSKFEGFPMTLLEAMSYG-IPCISSDCMSGP-RDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVK 327 (359)
T ss_pred HHHHHHhcCcEEEECCcccCcChHHHHHHHcC-CCEEEeCCCCCh-HHHccCCCceEEECCCCHHHHHHHHHHHHhCccc
Confidence 34566777787777654 36677799999999 788888823222 2455434556666888888777666654222
Q ss_pred -HHHHHHHHHHHHHHhhe
Q 003853 706 -EIQFRLANVQKVWQRFL 722 (791)
Q Consensus 706 -~~~~m~~~~~~~~~~~~ 722 (791)
...++++++++..+..+
T Consensus 328 ~~~~~~~~~~~~~~~~~~ 345 (359)
T PRK09922 328 YQHDAIPNSIERFYEVLY 345 (359)
T ss_pred CCHHHHHHHHHHhhHHHH
Confidence 23455555555444433
No 109
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=76.75 E-value=6.7 Score=49.45 Aligned_cols=83 Identities=12% Similarity=0.057 Sum_probs=60.2
Q ss_pred eEEEeCCCCCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--CHHHHHHHHHHHHH
Q 003853 639 VFCGVLPGDGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--NETEIQFRLANVQK 716 (791)
Q Consensus 639 ~FCl~p~G~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~~~~~~~m~~~~~~ 716 (791)
.|++-..-.++..-++|||++| +|||.++.- ...++|.-..-.+.|+..+...|.+.|..+ .++...+|.++.++
T Consensus 574 VFV~PS~~EgFGLvlLEAMAcG-lPVVASdvG--G~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~Dpelr~~m~~~gr~ 650 (1050)
T TIGR02468 574 VFINPAFIEPFGLTLIEAAAHG-LPMVATKNG--GPVDIHRVLDNGLLVDPHDQQAIADALLKLVADKQLWAECRQNGLK 650 (1050)
T ss_pred eeeCCcccCCCCHHHHHHHHhC-CCEEEeCCC--CcHHHhccCCcEEEECCCCHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 5555334457778899999999 699998743 344566556677888888887766666544 46677889999887
Q ss_pred HHHhheec
Q 003853 717 VWQRFLYR 724 (791)
Q Consensus 717 ~~~~~~~~ 724 (791)
..++|-|.
T Consensus 651 ~v~~FSWe 658 (1050)
T TIGR02468 651 NIHLFSWP 658 (1050)
T ss_pred HHHHCCHH
Confidence 77788776
No 110
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=74.85 E-value=15 Score=39.96 Aligned_cols=87 Identities=13% Similarity=0.021 Sum_probs=59.6
Q ss_pred hhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC--CHH
Q 003853 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL--NET 705 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i--~~~ 705 (791)
.++.+.|+.|.+.+.|.. ++++.-++|||.+|+ |||.++. -...+++.=.+..+.++..+...+.+.|..+ .++
T Consensus 256 ~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~-PvI~~~~--~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~ 332 (365)
T cd03825 256 ESLALIYSAADVFVVPSLQENFPNTAIEALACGT-PVVAFDV--GGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPD 332 (365)
T ss_pred HHHHHHHHhCCEEEeccccccccHHHHHHHhcCC-CEEEecC--CCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 456788999999999876 355777999999997 5666653 2344555544566777777766555555443 455
Q ss_pred HHHHHHHHHHHHH
Q 003853 706 EIQFRLANVQKVW 718 (791)
Q Consensus 706 ~~~~m~~~~~~~~ 718 (791)
+..+|.++.+...
T Consensus 333 ~~~~~~~~~~~~~ 345 (365)
T cd03825 333 EREELGEAARELA 345 (365)
T ss_pred HHHHHHHHHHHHH
Confidence 6778888777644
No 111
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=74.66 E-value=2.7 Score=32.87 Aligned_cols=30 Identities=40% Similarity=0.891 Sum_probs=22.7
Q ss_pred CCCcccccccccCcCCCCCCCceecCCeeecCCCcc
Q 003853 267 LLGQFCEVPVSSTCVNQCSGHGHCRGGFCQCDSGWY 302 (791)
Q Consensus 267 ~~G~~Ce~~~~~~C~~~Cs~~G~C~~G~C~C~~G~~ 302 (791)
..|..|+.. .+|.++..|..|.|.|++||.
T Consensus 17 ~~g~~C~~~------~qC~~~s~C~~g~C~C~~g~~ 46 (52)
T PF01683_consen 17 QPGESCESD------EQCIGGSVCVNGRCQCPPGYV 46 (52)
T ss_pred CCCCCCCCc------CCCCCcCEEcCCEeECCCCCE
Confidence 446667643 456688899999999999975
No 112
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=74.01 E-value=2.3 Score=39.54 Aligned_cols=30 Identities=37% Similarity=0.841 Sum_probs=22.6
Q ss_pred CCCCCCCEEecCC----CeeeeCCCCcCCCCCccc
Q 003853 125 SDCSGQGVCNHEL----GQCRCFHGFRGKGCSERI 155 (791)
Q Consensus 125 ~~Cs~~G~C~~~~----G~C~C~~G~~G~~Ce~~~ 155 (791)
+-|-+ |+|.... -.|.|+.||+|..||..+
T Consensus 51 ~YClH-G~C~yI~dl~~~~CrC~~GYtGeRCEh~d 84 (139)
T PHA03099 51 GYCLH-GDCIHARDIDGMYCRCSHGYTGIRCQHVV 84 (139)
T ss_pred CEeEC-CEEEeeccCCCceeECCCCccccccccee
Confidence 44764 6995422 369999999999999863
No 113
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=73.74 E-value=2 Score=40.00 Aligned_cols=24 Identities=38% Similarity=1.110 Sum_probs=19.9
Q ss_pred Cceec------CCeeecCCCcccCCCCCcc
Q 003853 287 HGHCR------GGFCQCDSGWYGVDCSIPS 310 (791)
Q Consensus 287 ~G~C~------~G~C~C~~G~~G~~C~~~~ 310 (791)
||+|. ...|.|..||+|..||...
T Consensus 55 HG~C~yI~dl~~~~CrC~~GYtGeRCEh~d 84 (139)
T PHA03099 55 HGDCIHARDIDGMYCRCSHGYTGIRCQHVV 84 (139)
T ss_pred CCEEEeeccCCCceeECCCCccccccccee
Confidence 35785 4589999999999999854
No 114
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=73.18 E-value=12 Score=40.76 Aligned_cols=90 Identities=14% Similarity=0.260 Sum_probs=53.8
Q ss_pred hhHHHhhccCeEEEeCCC--CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCC-hhhHHHHHhcCCHH
Q 003853 629 ENYHEDLSSSVFCGVLPG--DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDE-IPNLINILRGLNET 705 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G--~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~-~~~l~~~L~~i~~~ 705 (791)
.+..+.+.++...+.|.- ++++.-++|||.+|+ |||.++.- +..+++.-. ...++..+ +.+....|.. .++
T Consensus 259 ~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~-PvI~s~~~--~~~e~~~~~--g~~~~~~~~l~~~i~~l~~-~~~ 332 (363)
T cd04955 259 QELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGC-PVLASDNP--FNREVLGDK--AIYFKVGDDLASLLEELEA-DPE 332 (363)
T ss_pred HHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCC-CEEEecCC--ccceeecCC--eeEecCchHHHHHHHHHHh-CHH
Confidence 456678888887777654 345666999999999 77777643 334555432 33334444 4333333322 236
Q ss_pred HHHHHHHHHHHHHH-hheec
Q 003853 706 EIQFRLANVQKVWQ-RFLYR 724 (791)
Q Consensus 706 ~~~~m~~~~~~~~~-~~~~~ 724 (791)
.+.+|.++.++... +|-|+
T Consensus 333 ~~~~~~~~~~~~~~~~fs~~ 352 (363)
T cd04955 333 EVSAMAKAARERIREKYTWE 352 (363)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 67778777776543 45543
No 115
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=71.70 E-value=2.9 Score=29.81 Aligned_cols=21 Identities=43% Similarity=1.092 Sum_probs=17.7
Q ss_pred ccCCCCCCCC-CCeeeeCCCcc
Q 003853 175 SICPTHCDTT-RAMCFCGEGTK 195 (791)
Q Consensus 175 ~~C~g~C~~~-~g~C~C~~G~~ 195 (791)
..|+..|+.. .+.|.|++||-
T Consensus 6 t~CpA~CDpn~~~~C~CPeGyI 27 (34)
T PF09064_consen 6 TECPADCDPNSPGQCFCPEGYI 27 (34)
T ss_pred ccCCCccCCCCCCceeCCCceE
Confidence 4788999985 67999999995
No 116
>PHA01633 putative glycosyl transferase group 1
Probab=71.31 E-value=11 Score=41.63 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=35.1
Q ss_pred hhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCC
Q 003853 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLN 679 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~id 679 (791)
.+..+.++.|.+-+.|.- .+++.-+.|||++|+ |||.++-- +..|+++
T Consensus 215 ~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~-PVVas~~~--~l~Ei~g 263 (335)
T PHA01633 215 EYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGT-PVIHQLMP--PLDEFTS 263 (335)
T ss_pred HHHHHHHHhCCEEEECCccccCCHHHHHHHHcCC-CEEEccCC--CceeecC
Confidence 456788899987777654 466777999999999 99998653 3444433
No 117
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=70.37 E-value=1.3 Score=44.00 Aligned_cols=138 Identities=22% Similarity=0.560 Sum_probs=66.6
Q ss_pred CCCCCEEecCCC--eeeeCCCCc---CCCCCccccCCCCCCCCCC---CCCCCcccccCCCCC---CCCCCeeeeCCCcc
Q 003853 127 CSGQGVCNHELG--QCRCFHGFR---GKGCSERIHFQCNFPKTPE---LPYGRWVVSICPTHC---DTTRAMCFCGEGTK 195 (791)
Q Consensus 127 Cs~~G~C~~~~G--~C~C~~G~~---G~~Ce~~~~~~C~~~~~~~---~~~g~~~~~~C~g~C---~~~~g~C~C~~G~~ 195 (791)
|. +|......+ +|.|.+||. -..||.. ..|.....-+ +.|+ .|-..- ......|.|-+||.
T Consensus 8 CK-NG~LiQMSNHfEC~Cnegfvl~~EntCE~k--v~C~~~e~~~K~Cgdya-----~C~~~~~~~~~~~~~C~C~~gY~ 79 (197)
T PF06247_consen 8 CK-NGYLIQMSNHFECKCNEGFVLKNENTCEEK--VECDKLENVNKPCGDYA-----KCINQANKGEERAYKCDCINGYI 79 (197)
T ss_dssp -B-TEEEEEESSEEEEEESTTEEEEETTEEEE------SG-GGTTSEEETTE-----EEEE-SSTTSSTSEEEEE-TTEE
T ss_pred cc-CCEEEEccCceEEEcCCCcEEccccccccc--eecCcccccCccccchh-----hhhcCCCcccceeEEEecccCce
Confidence 44 556654444 799999994 5567763 4555311100 0111 222111 22345899999997
Q ss_pred cCCCCCCCcCCCcccCCCCCCCCCCCCCcccCcCcccCCCCCCCccccCCcchhhcccccccCccccCCCCCC---Cccc
Q 003853 196 YPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLL---GQFC 272 (791)
Q Consensus 196 G~~c~~~~~C~~~~~~~~~~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~~~c~~g~C~C~~~G~~---G~~C 272 (791)
-.. ..|-.. .|. .-.|. .|.|..++... ....|.|. -|+. +..|
T Consensus 80 ~~~----~vCvp~------------------~C~---~~~Cg-~GKCI~d~~~~------~~~~CSC~-IGkV~~dn~kC 126 (197)
T PF06247_consen 80 LKQ----GVCVPN------------------KCN---NKDCG-SGKCILDPDNP------NNPTCSCN-IGKVPDDNKKC 126 (197)
T ss_dssp ESS----SSEEEG------------------GGS---S---T-TEEEEEEEGGG------SEEEEEE--TEEETTTTTES
T ss_pred eeC----CeEchh------------------hcC---ceecC-CCeEEecCCCC------CCceeEee-eceEeccCCcc
Confidence 321 112100 111 23344 68897665421 13489998 7876 5667
Q ss_pred ccccccCcCCCCCCCceec--C--CeeecCCCcccCC
Q 003853 273 EVPVSSTCVNQCSGHGHCR--G--GFCQCDSGWYGVD 305 (791)
Q Consensus 273 e~~~~~~C~~~Cs~~G~C~--~--G~C~C~~G~~G~~ 305 (791)
...-+..|.--|..+-.|. + +.|.|..|+.|..
T Consensus 127 tk~G~T~C~LKCk~nE~CK~~~~~Y~C~~~~~~~~~~ 163 (197)
T PF06247_consen 127 TKTGETKCSLKCKENEECKLVDGYYKCVCKEGFPGDG 163 (197)
T ss_dssp EEEE--------TTTEEEEEETTEEEEEE-TT-EEET
T ss_pred cCCCccceeeecCCCcceeeeCcEEEeecCCCCCCCC
Confidence 7776778888998888996 3 4899999987754
No 118
>PLN02949 transferase, transferring glycosyl groups
Probab=68.32 E-value=16 Score=42.38 Aligned_cols=92 Identities=13% Similarity=0.095 Sum_probs=55.2
Q ss_pred hhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccC-CCC-cEEEEecCCChhhHHHHHhcC---
Q 003853 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVL-NYE-SFVVRISEDEIPNLINILRGL--- 702 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~i-dw~-~~sv~i~~~~~~~l~~~L~~i--- 702 (791)
.+..+.|+++.+.+.|.- .+++.-++|||.+|++||....+ =|-++++ ++. .-.-++. .+...+.+.+..+
T Consensus 346 ~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~g--Gp~~eIV~~~~~g~tG~l~-~~~~~la~ai~~ll~~ 422 (463)
T PLN02949 346 RDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSA--GPKMDIVLDEDGQQTGFLA-TTVEEYADAILEVLRM 422 (463)
T ss_pred HHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCC--CCcceeeecCCCCcccccC-CCHHHHHHHHHHHHhC
Confidence 456788899988876653 46677799999999877766432 1333332 211 1111111 2555444444432
Q ss_pred CHHHHHHHHHHHHHHHHhhee
Q 003853 703 NETEIQFRLANVQKVWQRFLY 723 (791)
Q Consensus 703 ~~~~~~~m~~~~~~~~~~~~~ 723 (791)
++++..+|+++.++..++|-+
T Consensus 423 ~~~~r~~m~~~ar~~~~~FS~ 443 (463)
T PLN02949 423 RETERLEIAAAARKRANRFSE 443 (463)
T ss_pred CHHHHHHHHHHHHHHHHHcCH
Confidence 566777898888876676644
No 119
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=67.83 E-value=4.5 Score=28.88 Aligned_cols=25 Identities=32% Similarity=0.790 Sum_probs=17.6
Q ss_pred ccCCCCCCCCCCCCEEecCCCeeeeCCCCc
Q 003853 118 IGGKSCKSDCSGQGVCNHELGQCRCFHGFR 147 (791)
Q Consensus 118 ~~~~~C~~~Cs~~G~C~~~~G~C~C~~G~~ 147 (791)
+...+||..|..+ ..++|.||.||.
T Consensus 3 Cn~t~CpA~CDpn-----~~~~C~CPeGyI 27 (34)
T PF09064_consen 3 CNQTECPADCDPN-----SPGQCFCPEGYI 27 (34)
T ss_pred cccccCCCccCCC-----CCCceeCCCceE
Confidence 3456777777643 267999999995
No 120
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=66.98 E-value=55 Score=38.83 Aligned_cols=64 Identities=11% Similarity=0.031 Sum_probs=42.7
Q ss_pred hhHHHhhccCeEEEeCC-CCCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhH
Q 003853 629 ENYHEDLSSSVFCGVLP-GDGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNL 695 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~-G~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l 695 (791)
.+..+.|+.+...+.|. -.+++.-++|||.+|+ |||.++.--. .++|.=..-.+.++..+...+
T Consensus 464 ~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~Gl-PVVATdvGG~--~EiV~dG~nG~LVp~~D~~aL 528 (578)
T PRK15490 464 RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGV-PVISTPAGGS--AECFIEGVSGFILDDAQTVNL 528 (578)
T ss_pred hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCC-CEEEeCCCCc--HHHcccCCcEEEECCCChhhH
Confidence 34566788888776664 3466778999999998 9999875333 344444455666777665433
No 121
>PHA01630 putative group 1 glycosyl transferase
Probab=65.77 E-value=19 Score=39.72 Aligned_cols=40 Identities=8% Similarity=0.041 Sum_probs=30.5
Q ss_pred hhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecc
Q 003853 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDG 669 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~ 669 (791)
.+..+.|+.+...+.|.- .+++.-++|||++|+ |||.++.
T Consensus 201 ~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~-PVIas~~ 241 (331)
T PHA01630 201 DDIYSLFAGCDILFYPVRGGAFEIPVIEALALGL-DVVVTEK 241 (331)
T ss_pred HHHHHHHHhCCEEEECCccccCChHHHHHHHcCC-CEEEeCC
Confidence 566788999998887754 456666999999997 6677663
No 122
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=65.10 E-value=15 Score=43.39 Aligned_cols=95 Identities=13% Similarity=0.208 Sum_probs=60.6
Q ss_pred hhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccC--CcccC-CCCcEEEEecC-------CChhhHHH
Q 003853 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLP--YENVL-NYESFVVRISE-------DEIPNLIN 697 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lP--f~~~i-dw~~~sv~i~~-------~~~~~l~~ 697 (791)
.+|.+.++.+...+.|.- .+++.-..|||.+| +|||.++.--++ -.+++ +-....|.|.. +.+.+|.+
T Consensus 466 ~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G-~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 466 LDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMG-IPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred cchHHHhhhceEEEeccccCCCCcHHHHHHHcC-CCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 468999999998777764 46788899999999 699998864442 01333 44356666652 22334444
Q ss_pred HHhcC---CHHHHHHHHHHHHHHHHhheec
Q 003853 698 ILRGL---NETEIQFRLANVQKVWQRFLYR 724 (791)
Q Consensus 698 ~L~~i---~~~~~~~m~~~~~~~~~~~~~~ 724 (791)
.|..+ +..+....|....++.+.|.|.
T Consensus 545 ~m~~~~~~~~r~~~~~r~~~~r~s~~f~W~ 574 (590)
T cd03793 545 YMYEFCQLSRRQRIIQRNRTERLSDLLDWR 574 (590)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHhCCHH
Confidence 44442 3344444444445788888886
No 123
>PRK14099 glycogen synthase; Provisional
Probab=64.82 E-value=24 Score=41.22 Aligned_cols=92 Identities=16% Similarity=0.052 Sum_probs=56.5
Q ss_pred hhHHHhh-ccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCC--------cEEEEecCCChhhHHHH
Q 003853 629 ENYHEDL-SSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYE--------SFVVRISEDEIPNLINI 698 (791)
Q Consensus 629 ~~y~~~l-~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~--------~~sv~i~~~~~~~l~~~ 698 (791)
.+....| +.|.+-+.|.= .+.+.-+.|||++|++||+ ++.=-++ +-++|.+ .-.+.++..+...|.+.
T Consensus 360 ~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVv-s~~GGl~-d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~a 437 (485)
T PRK14099 360 EALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVV-ARVGGLA-DTVVDANEMAIATGVATGVQFSPVTADALAAA 437 (485)
T ss_pred HHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEE-eCCCCcc-ceeecccccccccCCCceEEeCCCCHHHHHHH
Confidence 3445555 45777777654 3456678999999999988 4321121 2233442 35677788887766665
Q ss_pred Hhc----C-CHHHHHHHHHHHHHHHHhheec
Q 003853 699 LRG----L-NETEIQFRLANVQKVWQRFLYR 724 (791)
Q Consensus 699 L~~----i-~~~~~~~m~~~~~~~~~~~~~~ 724 (791)
|.. + .++...+|+++.+ .+.|-|.
T Consensus 438 i~~a~~l~~d~~~~~~l~~~~~--~~~fSw~ 466 (485)
T PRK14099 438 LRKTAALFADPVAWRRLQRNGM--TTDVSWR 466 (485)
T ss_pred HHHHHHHhcCHHHHHHHHHHhh--hhcCChH
Confidence 543 2 4566777777664 3556554
No 124
>PRK00654 glgA glycogen synthase; Provisional
Probab=64.39 E-value=21 Score=41.28 Aligned_cols=90 Identities=13% Similarity=0.068 Sum_probs=54.5
Q ss_pred hHHHhhccCeEEEeCCCC-CCchhHHHHHhhCCeeEEEecccccCCcccCCCC-----cEEEEecCCChhhHHHHHhcC-
Q 003853 630 NYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYE-----SFVVRISEDEIPNLINILRGL- 702 (791)
Q Consensus 630 ~y~~~l~~S~FCl~p~G~-~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~-----~~sv~i~~~~~~~l~~~L~~i- 702 (791)
.....++.+.+.+.|.=. +++.-+.|||.+|++||+- +.--++ +-+.|.. .-.+.++..+...|.+.|..+
T Consensus 349 ~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~-~~gG~~-e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l 426 (466)
T PRK00654 349 LAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVR-RTGGLA-DTVIDYNPEDGEATGFVFDDFNAEDLLRALRRAL 426 (466)
T ss_pred HHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEe-CCCCcc-ceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHH
Confidence 345788999999988643 4466699999999988774 321111 1122331 446777887877666555443
Q ss_pred ----CHHHHHHHHHHHHHHHHhhee
Q 003853 703 ----NETEIQFRLANVQKVWQRFLY 723 (791)
Q Consensus 703 ----~~~~~~~m~~~~~~~~~~~~~ 723 (791)
.++.+.+|.++..+ ++|-|
T Consensus 427 ~~~~~~~~~~~~~~~~~~--~~fsw 449 (466)
T PRK00654 427 ELYRQPPLWRALQRQAMA--QDFSW 449 (466)
T ss_pred HHhcCHHHHHHHHHHHhc--cCCCh
Confidence 34455666555432 44544
No 125
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=64.30 E-value=18 Score=41.79 Aligned_cols=92 Identities=14% Similarity=0.031 Sum_probs=55.4
Q ss_pred hhHHHhhccCeEEEeCCCC-CCchhHHHHHhhCCeeEEEecccccCCcccCCCC-----cEEEEecCCChhhHHHHHhcC
Q 003853 629 ENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYE-----SFVVRISEDEIPNLINILRGL 702 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G~-~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~-----~~sv~i~~~~~~~l~~~L~~i 702 (791)
....+.++.+.+.+.|.-. +.+.-++|||.+|+.||+ ++.--++ +-+.|.+ ...+.++..+...|.+.|..+
T Consensus 357 ~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-s~~gg~~-e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~ 434 (473)
T TIGR02095 357 ALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIV-RRTGGLA-DTVVDGDPEAESGTGFLFEEYDPGALLAALSRA 434 (473)
T ss_pred HHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-ccCCCcc-ceEecCCCCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 4456789999999998653 345568999999986654 4432222 1223321 556777777776655554432
Q ss_pred ------CHHHHHHHHHHHHHHHHhheec
Q 003853 703 ------NETEIQFRLANVQKVWQRFLYR 724 (791)
Q Consensus 703 ------~~~~~~~m~~~~~~~~~~~~~~ 724 (791)
.++.+.+|.++.. .++|-|.
T Consensus 435 l~~~~~~~~~~~~~~~~~~--~~~fsw~ 460 (473)
T TIGR02095 435 LRLYRQDPSLWEALQKNAM--SQDFSWD 460 (473)
T ss_pred HHHHhcCHHHHHHHHHHHh--ccCCCcH
Confidence 3455666666543 2445443
No 126
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=64.13 E-value=16 Score=41.06 Aligned_cols=92 Identities=11% Similarity=0.047 Sum_probs=53.1
Q ss_pred chhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC---C
Q 003853 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL---N 703 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i---~ 703 (791)
..+..+.|+.+...+.|.- ++++.-++|||.+|+ |||.++.--+ .++|.=. ..+.++. +...+.+.|..+ .
T Consensus 260 ~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~-PVI~s~~gg~--~e~i~~~-~~~~~~~-~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 260 HERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGL-LVVSTRVGGI--PEVLPPD-MILLAEP-DVESIVRKLEEAISIL 334 (398)
T ss_pred HHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCC-CEEECCCCCc--hhheeCC-ceeecCC-CHHHHHHHHHHHHhCh
Confidence 3577889999998887753 456667999999997 6666665433 3455433 2344443 544444433322 1
Q ss_pred HHHHHHHHHHHHHHHHhheec
Q 003853 704 ETEIQFRLANVQKVWQRFLYR 724 (791)
Q Consensus 704 ~~~~~~m~~~~~~~~~~~~~~ 724 (791)
.++...+++..+++.++|-|.
T Consensus 335 ~~~~~~~~~~~~~~~~~fs~~ 355 (398)
T cd03796 335 RTGKHDPWSFHNRVKKMYSWE 355 (398)
T ss_pred hhhhhHHHHHHHHHHhhCCHH
Confidence 222223344445566777554
No 127
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=62.13 E-value=14 Score=40.28 Aligned_cols=83 Identities=13% Similarity=0.167 Sum_probs=49.8
Q ss_pred hHHHhhccCeEEEeCCCCCCchhHHHHHhhCCeeEEEecccccCCc-----ccCCCCcEEEEecCCC--hhhHHHHHhcC
Q 003853 630 NYHEDLSSSVFCGVLPGDGWSGRMEDSILQGCIPVVIQDGIFLPYE-----NVLNYESFVVRISEDE--IPNLINILRGL 702 (791)
Q Consensus 630 ~y~~~l~~S~FCl~p~G~~~s~R~~dal~~GCIPVii~d~~~lPf~-----~~idw~~~sv~i~~~~--~~~l~~~L~~i 702 (791)
++.+.|..+...+.+.| +.-++|||.+|+ |||+.+.-..+-+ +.|.-....+.++..+ ...|.+.|+.+
T Consensus 243 ~~~~~l~~ad~~v~~~g---~~~l~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~l 318 (348)
T TIGR01133 243 NMAAAYAAADLVISRAG---ASTVAELAAAGV-PAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKL 318 (348)
T ss_pred CHHHHHHhCCEEEECCC---hhHHHHHHHcCC-CEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHH
Confidence 78899999999888765 345899999985 7777532100000 1233345555666544 44554444332
Q ss_pred --CHHHHHHHHHHHHH
Q 003853 703 --NETEIQFRLANVQK 716 (791)
Q Consensus 703 --~~~~~~~m~~~~~~ 716 (791)
+++...+|.++.++
T Consensus 319 l~~~~~~~~~~~~~~~ 334 (348)
T TIGR01133 319 LLDPANLEAMAEAARK 334 (348)
T ss_pred HcCHHHHHHHHHHHHh
Confidence 45666677776653
No 128
>PRK14098 glycogen synthase; Provisional
Probab=61.61 E-value=50 Score=38.60 Aligned_cols=83 Identities=12% Similarity=0.020 Sum_probs=51.5
Q ss_pred hhHHHhhccCeEEEeCCCC-CCchhHHHHHhhCCeeEEEecccccCCcccCCC---CcEEEEecCCChhhHHHHHhcC--
Q 003853 629 ENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQDGIFLPYENVLNY---ESFVVRISEDEIPNLINILRGL-- 702 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G~-~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw---~~~sv~i~~~~~~~l~~~L~~i-- 702 (791)
....+.|+.+.+.+.|.-. +.+.-..|||++|++||+...+- ++ +-+.|+ ..-.+.++..+...|.+.|..+
T Consensus 373 ~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GG-l~-d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 373 AFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGG-IV-ETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred HHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCC-Cc-eeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 3456789999999988643 34566899999999999865432 11 111122 3345667777776666555431
Q ss_pred ---CHHHHHHHHHH
Q 003853 703 ---NETEIQFRLAN 713 (791)
Q Consensus 703 ---~~~~~~~m~~~ 713 (791)
.++++.+|+++
T Consensus 451 ~~~~~~~~~~~~~~ 464 (489)
T PRK14098 451 LYHDEERWEELVLE 464 (489)
T ss_pred HHcCHHHHHHHHHH
Confidence 34555555543
No 129
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=61.36 E-value=8.5 Score=30.06 Aligned_cols=25 Identities=40% Similarity=1.056 Sum_probs=20.2
Q ss_pred CCC--CCCCCCCCEEecCCCeeeeCCCCc
Q 003853 121 KSC--KSDCSGQGVCNHELGQCRCFHGFR 147 (791)
Q Consensus 121 ~~C--~~~Cs~~G~C~~~~G~C~C~~G~~ 147 (791)
..| ...|.++..|. .|.|.|++||.
T Consensus 20 ~~C~~~~qC~~~s~C~--~g~C~C~~g~~ 46 (52)
T PF01683_consen 20 ESCESDEQCIGGSVCV--NGRCQCPPGYV 46 (52)
T ss_pred CCCCCcCCCCCcCEEc--CCEeECCCCCE
Confidence 346 45688899997 89999999984
No 130
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=55.42 E-value=6.7 Score=48.25 Aligned_cols=35 Identities=31% Similarity=0.880 Sum_probs=28.2
Q ss_pred CCCC-CCCCCCCCEEecCCC--eeeeC-CCCcCCCCCcc
Q 003853 120 GKSC-KSDCSGQGVCNHELG--QCRCF-HGFRGKGCSER 154 (791)
Q Consensus 120 ~~~C-~~~Cs~~G~C~~~~G--~C~C~-~G~~G~~Ce~~ 154 (791)
.+.| +++|.|+|+|...-. .|.|. .||.|..|+..
T Consensus 623 ~~~C~~nPC~N~g~C~egwNrfiCDCs~T~~~G~~CerE 661 (1591)
T KOG3514|consen 623 EKICESNPCQNGGKCSEGWNRFICDCSGTGFEGRTCERE 661 (1591)
T ss_pred ccccCCCcccCCCCccccccccccccccCcccCccccce
Confidence 4689 899999999973222 69995 69999999985
No 131
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=52.00 E-value=7.6 Score=28.98 Aligned_cols=21 Identities=29% Similarity=0.865 Sum_probs=17.4
Q ss_pred CCCCCCceec----CCeeecCCCcc
Q 003853 282 NQCSGHGHCR----GGFCQCDSGWY 302 (791)
Q Consensus 282 ~~Cs~~G~C~----~G~C~C~~G~~ 302 (791)
+.|..++.|+ +..|.|++||.
T Consensus 10 ~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 10 HNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp SSSSTTSEEEEETTEEEEEESTTEE
T ss_pred CcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 4688889997 34899999998
No 132
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=48.90 E-value=9.5 Score=27.71 Aligned_cols=23 Identities=26% Similarity=0.743 Sum_probs=16.0
Q ss_pred CCCCCceec----CCeeecCCCcccCC
Q 003853 283 QCSGHGHCR----GGFCQCDSGWYGVD 305 (791)
Q Consensus 283 ~Cs~~G~C~----~G~C~C~~G~~G~~ 305 (791)
.|..+.+|. ...|+|++||.|..
T Consensus 7 ~C~~nA~C~~~~~~~~C~C~~Gy~GdG 33 (36)
T PF12947_consen 7 GCHPNATCTNTGGSYTCTCKPGYEGDG 33 (36)
T ss_dssp GS-TTCEEEE-TTSEEEEE-CEEECCS
T ss_pred CCCCCcEeecCCCCEEeECCCCCccCC
Confidence 466677775 45899999999864
No 133
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=48.74 E-value=22 Score=39.67 Aligned_cols=66 Identities=18% Similarity=0.144 Sum_probs=41.6
Q ss_pred hhHHHhhccCeEEEeCCCCC------CchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhc
Q 003853 629 ENYHEDLSSSVFCGVLPGDG------WSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRG 701 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G~~------~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~ 701 (791)
.+..+.|+.+..+++|.-.. ....++|+|++|+ |||.++ +.++++...-.+.+ ..+..++.+.|+.
T Consensus 265 ~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~-PVVat~-----~~~~~~~~~~~~~~-~~d~~~~~~ai~~ 336 (373)
T cd04950 265 KELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGK-PVVATP-----LPEVRRYEDEVVLI-ADDPEEFVAAIEK 336 (373)
T ss_pred HHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCC-CEEecC-----cHHHHhhcCcEEEe-CCCHHHHHHHHHH
Confidence 56778899999999986421 2356999999995 888654 33444433333333 3455555555544
No 134
>PLN00142 sucrose synthase
Probab=48.11 E-value=52 Score=40.79 Aligned_cols=91 Identities=7% Similarity=0.004 Sum_probs=57.5
Q ss_pred HHHhhccC--eEEEeCCCCCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhc------C
Q 003853 631 YHEDLSSS--VFCGVLPGDGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRG------L 702 (791)
Q Consensus 631 y~~~l~~S--~FCl~p~G~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~------i 702 (791)
....++.+ .|.+-..-.+++.-++|||.+|+ |||.++.--+ .++|.-..-.+.|+..+...|.+.|.. -
T Consensus 659 Lyr~iadaaDVfVlPS~~EgFGLvvLEAMA~Gl-PVVATdvGG~--~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~ 735 (815)
T PLN00142 659 LYRYIADTKGAFVQPALYEAFGLTVVEAMTCGL-PTFATCQGGP--AEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKE 735 (815)
T ss_pred HHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCC-CEEEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcC
Confidence 44445543 35332233566777999999996 7887764332 245544566777887777655444432 2
Q ss_pred CHHHHHHHHHHH-HHHHHhheec
Q 003853 703 NETEIQFRLANV-QKVWQRFLYR 724 (791)
Q Consensus 703 ~~~~~~~m~~~~-~~~~~~~~~~ 724 (791)
.++...+|.++. +++.++|-|.
T Consensus 736 Dp~lr~~mg~~Ar~rv~e~FSWe 758 (815)
T PLN00142 736 DPSYWNKISDAGLQRIYECYTWK 758 (815)
T ss_pred CHHHHHHHHHHHHHHHHHhCCHH
Confidence 577778888876 5567888886
No 135
>KOG1388 consensus Attractin and platelet-activating factor acetylhydrolase [Signal transduction mechanisms; Defense mechanisms]
Probab=48.10 E-value=12 Score=38.24 Aligned_cols=74 Identities=28% Similarity=0.569 Sum_probs=41.7
Q ss_pred CCCCCCEEecCCCee-eeCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCC---CCCCCCCCeeee-CCCcccCCCC
Q 003853 126 DCSGQGVCNHELGQC-RCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICP---THCDTTRAMCFC-GEGTKYPNRP 200 (791)
Q Consensus 126 ~Cs~~G~C~~~~G~C-~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~---g~C~~~~g~C~C-~~G~~G~~c~ 200 (791)
.|+|++.|+. .-.| +|..|-+|..|+. |...-..+..-|.+....|. ..|....++|.| .-|..|..|+
T Consensus 53 ~cNGh~~c~t-~~v~~~~~N~~~g~~c~k-----c~~g~~GdtN~g~c~~~~~~g~~~~~~~~~~~c~c~~kgvvgd~c~ 126 (217)
T KOG1388|consen 53 QCNGHSDCNT-QHVCWRCENGTTGAHCEK-----CIVGFYGDTNGGKCQPCDCNGGASACVTLTGKCFCTTKGVVGDLCP 126 (217)
T ss_pred HhcCCCCccc-ceeeeeccCccccccCCc-----eEEEEEecCCCCccCHhhhcCCeeeeeccCCccccccceEecccCc
Confidence 5778888874 2233 4666777777764 22111111111223333343 346667889999 5788888887
Q ss_pred CCCcC
Q 003853 201 VAEAC 205 (791)
Q Consensus 201 ~~~~C 205 (791)
.++.+
T Consensus 127 ~~e~~ 131 (217)
T KOG1388|consen 127 KCEVP 131 (217)
T ss_pred ccccc
Confidence 66543
No 136
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=47.55 E-value=16 Score=33.38 Aligned_cols=28 Identities=32% Similarity=0.901 Sum_probs=21.9
Q ss_pred CCC--CCCCCCCCEEecCC-CeeeeCCCCcC
Q 003853 121 KSC--KSDCSGQGVCNHEL-GQCRCFHGFRG 148 (791)
Q Consensus 121 ~~C--~~~Cs~~G~C~~~~-G~C~C~~G~~G 148 (791)
..| ...|..+|.|+... ..|.|.+||.-
T Consensus 78 d~Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 78 DQCDVYGFCGPNGICNSNNSPKCSCLPGFEP 108 (110)
T ss_pred cCCCCccccCCccEeCCCCCCceECCCCcCC
Confidence 577 46899999997543 37999999963
No 137
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=45.28 E-value=14 Score=46.43 Aligned_cols=35 Identities=29% Similarity=0.845 Sum_probs=29.7
Q ss_pred CCCC-CCCCCCCCEEecCCC---eeeeC-CCCcCCCCCccc
Q 003853 120 GKSC-KSDCSGQGVCNHELG---QCRCF-HGFRGKGCSERI 155 (791)
Q Consensus 120 ~~~C-~~~Cs~~G~C~~~~G---~C~C~-~G~~G~~Ce~~~ 155 (791)
...| |+.|..+|.|+. .+ .|.|. .||+|..|...+
T Consensus 545 ~drClPN~CehgG~C~Q-s~~~f~C~C~~TGY~GatCHtsi 584 (1306)
T KOG3516|consen 545 SDRCLPNPCEHGGKCSQ-SWDDFECNCELTGYKGATCHTSI 584 (1306)
T ss_pred ccccCCccccCCCcccc-cccceeEeccccccccccccCCC
Confidence 3567 899999999986 44 79998 999999999865
No 138
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=45.01 E-value=45 Score=40.65 Aligned_cols=63 Identities=27% Similarity=0.595 Sum_probs=34.9
Q ss_pred CCCCCEEecCCCeeeeCCCCc----CCCCCccccCCCCCCCCCC-CCCCCcccccCCCCCCC-C--CCeeeeCCCccc
Q 003853 127 CSGQGVCNHELGQCRCFHGFR----GKGCSERIHFQCNFPKTPE-LPYGRWVVSICPTHCDT-T--RAMCFCGEGTKY 196 (791)
Q Consensus 127 Cs~~G~C~~~~G~C~C~~G~~----G~~Ce~~~~~~C~~~~~~~-~~~g~~~~~~C~g~C~~-~--~g~C~C~~G~~G 196 (791)
|++-|.=.--.|.|.|.+||. |..|+. |..+..-. .....| ..||.+-.. . ...|.|..||.-
T Consensus 248 C~~dGeWlvpiG~C~C~aGye~~~~~~~C~a-----Cp~G~yK~~~~~~~C--~~CP~~S~s~~ega~~C~C~~gyyR 318 (996)
T KOG0196|consen 248 CSGDGEWLVPIGGCVCKAGYEEAENGKACQA-----CPPGTYKASQGDSLC--LPCPPNSHSSSEGATSCTCENGYYR 318 (996)
T ss_pred EcCCCcEEEEcCceeecCCCCcccCCCccee-----CCCCcccCCCCCCCC--CCCCCCCCCCCCCCCcccccCCccc
Confidence 776665544478999999994 566764 65432110 001111 245532221 1 237999999874
No 139
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=43.73 E-value=65 Score=37.81 Aligned_cols=93 Identities=14% Similarity=0.101 Sum_probs=54.9
Q ss_pred hHHHhhccCeEEEeCC-CCCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecC----C---C-hhhHHHHHh
Q 003853 630 NYHEDLSSSVFCGVLP-GDGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISE----D---E-IPNLINILR 700 (791)
Q Consensus 630 ~y~~~l~~S~FCl~p~-G~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~----~---~-~~~l~~~L~ 700 (791)
+..+.++.+.-.+.|. ..+++.-++|||.+|+ |||.+|----| .++|.=..-.+.++. . + +..|.+.+.
T Consensus 385 ~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~-PVI~~dv~~G~-~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~ 462 (500)
T TIGR02918 385 NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGL-GMIGFDVNYGN-PTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIV 462 (500)
T ss_pred CHHHHHHhCCEEEEcCccccccHHHHHHHHhCC-CEEEecCCCCC-HHHccCCCCEEEEeCCccccchhHHHHHHHHHHH
Confidence 4556677776555544 4577777999999996 77777631112 234433333444441 2 2 333333322
Q ss_pred c-CCHHHHHHHHHHHHHHHHhheec
Q 003853 701 G-LNETEIQFRLANVQKVWQRFLYR 724 (791)
Q Consensus 701 ~-i~~~~~~~m~~~~~~~~~~~~~~ 724 (791)
. +.++++.+|.++.++..++|-+.
T Consensus 463 ~ll~~~~~~~~~~~a~~~a~~fs~~ 487 (500)
T TIGR02918 463 EYFNSNDIDAFHEYSYQIAEGFLTA 487 (500)
T ss_pred HHhChHHHHHHHHHHHHHHHhcCHH
Confidence 2 24667889999998888887654
No 140
>PLN02939 transferase, transferring glycosyl groups
Probab=43.73 E-value=81 Score=39.74 Aligned_cols=89 Identities=12% Similarity=0.093 Sum_probs=54.5
Q ss_pred HHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCC--------cEEEEecCCChhhHHHHHhc-
Q 003853 632 HEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYE--------SFVVRISEDEIPNLINILRG- 701 (791)
Q Consensus 632 ~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~--------~~sv~i~~~~~~~l~~~L~~- 701 (791)
...++.|.+.+.|.= .+++.-+.|||++|++||+...+- + -+-|+|++ .-.+.++..+...|.+.|..
T Consensus 851 h~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGG-L-~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rA 928 (977)
T PLN02939 851 HSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGG-L-NDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERA 928 (977)
T ss_pred HHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCC-C-cceeecCCccccccCCCceEEecCCCHHHHHHHHHHH
Confidence 468899999888864 345666999999999999764321 1 12233432 23555666676655444432
Q ss_pred ---C--CHHHHHHHHHHHHHHHHhheec
Q 003853 702 ---L--NETEIQFRLANVQKVWQRFLYR 724 (791)
Q Consensus 702 ---i--~~~~~~~m~~~~~~~~~~~~~~ 724 (791)
+ .++.+.+|+++.. .+.|-|.
T Consensus 929 L~~~~~dpe~~~~L~~~am--~~dFSWe 954 (977)
T PLN02939 929 FNYYKRKPEVWKQLVQKDM--NIDFSWD 954 (977)
T ss_pred HHHhccCHHHHHHHHHHHH--HhcCCHH
Confidence 2 4677777776532 3556554
No 141
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=43.23 E-value=38 Score=39.21 Aligned_cols=90 Identities=11% Similarity=0.015 Sum_probs=60.6
Q ss_pred CchhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCe---eEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhc-
Q 003853 627 RSENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCI---PVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRG- 701 (791)
Q Consensus 627 ~~~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCI---PVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~- 701 (791)
...+..+.|+.+...++|.- ++++.-+.|||.+|+= |||+++.--.+-+ ..-.+.|+..+...|.+.|..
T Consensus 350 ~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-----~~~g~lv~p~d~~~la~ai~~~ 424 (460)
T cd03788 350 PREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-----LSGALLVNPYDIDEVADAIHRA 424 (460)
T ss_pred CHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-----cCCCEEECCCCHHHHHHHHHHH
Confidence 34677888999987777654 5677778999999996 6999874322211 234677888887766665543
Q ss_pred --CCHHHHHHHHHHHHHHHHhh
Q 003853 702 --LNETEIQFRLANVQKVWQRF 721 (791)
Q Consensus 702 --i~~~~~~~m~~~~~~~~~~~ 721 (791)
.++++..+|.++.++...+|
T Consensus 425 l~~~~~e~~~~~~~~~~~v~~~ 446 (460)
T cd03788 425 LTMPLEERRERHRKLREYVRTH 446 (460)
T ss_pred HcCCHHHHHHHHHHHHHHHHhC
Confidence 35667777766666655554
No 142
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=42.28 E-value=85 Score=34.77 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=54.9
Q ss_pred hhHHHhhccCeEEEeCCCC-CCchhHHHHHhhCCeeEEEecccccCCcc-cCCCCcE-EEEecCCChh---hHHHHHhcC
Q 003853 629 ENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQDGIFLPYEN-VLNYESF-VVRISEDEIP---NLINILRGL 702 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G~-~~s~R~~dal~~GCIPVii~d~~~lPf~~-~idw~~~-sv~i~~~~~~---~l~~~L~~i 702 (791)
.+..++|.++++-+.-.=+ .++.-++|+|++|-|||.=..+ =|--| |++|+-- .=+..+.+.. .+.+|+. .
T Consensus 348 ~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~Sg--GP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~-~ 424 (465)
T KOG1387|consen 348 EKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSG--GPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVK-L 424 (465)
T ss_pred HHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCC--CCceeeeeccCCccceeecCChHHHHHHHHHHHH-c
Confidence 3567899999998754433 3477799999999999987432 11111 3444332 2233333333 3444443 3
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 003853 703 NETEIQFRLANVQKVWQRF 721 (791)
Q Consensus 703 ~~~~~~~m~~~~~~~~~~~ 721 (791)
+.++...||++-|+--.||
T Consensus 425 ~~~~r~~~r~~AR~s~~RF 443 (465)
T KOG1387|consen 425 NYDERNMMRRNARKSLARF 443 (465)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 5666788888888766666
No 143
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=42.25 E-value=61 Score=37.25 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=51.1
Q ss_pred hhHHHhhccCeEEEeCCCC-CCchhHHHHHhhCCeeEEEecccccCCcccCCCC-----cEEEEecCCChhhHHHHHhcC
Q 003853 629 ENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYE-----SFVVRISEDEIPNLINILRGL 702 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G~-~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~-----~~sv~i~~~~~~~l~~~L~~i 702 (791)
....+.++.+.+.+.|.-. +.+.-++|||++|+.||.-..+ -++ +-+.|.. .-.+.++..+...|.+.|..+
T Consensus 362 ~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~g-g~~-e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~ 439 (476)
T cd03791 362 ALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATG-GLA-DTVIDYNEDTGEGTGFVFEGYNADALLAALRRA 439 (476)
T ss_pred HHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCC-Ccc-ceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHH
Confidence 3456788899999887643 4455689999999988754322 111 1223432 146667777766555555432
Q ss_pred -----CHHHHHHHHHHHH
Q 003853 703 -----NETEIQFRLANVQ 715 (791)
Q Consensus 703 -----~~~~~~~m~~~~~ 715 (791)
.+++..+|.++..
T Consensus 440 l~~~~~~~~~~~~~~~~~ 457 (476)
T cd03791 440 LALYRDPEAWRKLQRNAM 457 (476)
T ss_pred HHHHcCHHHHHHHHHHHh
Confidence 2455666666543
No 144
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=38.63 E-value=75 Score=35.77 Aligned_cols=85 Identities=15% Similarity=0.248 Sum_probs=52.5
Q ss_pred hhHHHhhccCeEEEeCCCCCCchhHHHHHhhCCeeEEEecccccCCcccCC-----CCcEEEEecCCChhhHHHHHhcC-
Q 003853 629 ENYHEDLSSSVFCGVLPGDGWSGRMEDSILQGCIPVVIQDGIFLPYENVLN-----YESFVVRISEDEIPNLINILRGL- 702 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G~~~s~R~~dal~~GCIPVii~d~~~lPf~~~id-----w~~~sv~i~~~~~~~l~~~L~~i- 702 (791)
.+..+.|+.|.+.+..+|. .-+.|||.+| +|||+.+.. |-++..+ =..+.+.+. +..+|.+.|..+
T Consensus 265 ~~~~~~~~~aDl~I~k~gg---~tl~EA~a~G-~PvI~~~~~--pgqe~~N~~~~~~~G~g~~~~--~~~~l~~~i~~ll 336 (391)
T PRK13608 265 KHMNEWMASSQLMITKPGG---ITISEGLARC-IPMIFLNPA--PGQELENALYFEEKGFGKIAD--TPEEAIKIVASLT 336 (391)
T ss_pred chHHHHHHhhhEEEeCCch---HHHHHHHHhC-CCEEECCCC--CCcchhHHHHHHhCCcEEEeC--CHHHHHHHHHHHh
Confidence 4577899999998764442 2389999998 588887642 3333221 233444432 344444444333
Q ss_pred -CHHHHHHHHHHHHHHHHhh
Q 003853 703 -NETEIQFRLANVQKVWQRF 721 (791)
Q Consensus 703 -~~~~~~~m~~~~~~~~~~~ 721 (791)
.++++.+|+++.+++.+.+
T Consensus 337 ~~~~~~~~m~~~~~~~~~~~ 356 (391)
T PRK13608 337 NGNEQLTNMISTMEQDKIKY 356 (391)
T ss_pred cCHHHHHHHHHHHHHhcCCC
Confidence 5678889998888766554
No 145
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=38.54 E-value=87 Score=35.02 Aligned_cols=79 Identities=15% Similarity=0.281 Sum_probs=48.4
Q ss_pred hhHHHhhccCeEEEeCCCCCCchhHHHHHhhCCeeEEEecccccCCccc------CCCCcEEEEecCCChhhHHHHHhcC
Q 003853 629 ENYHEDLSSSVFCGVLPGDGWSGRMEDSILQGCIPVVIQDGIFLPYENV------LNYESFVVRISEDEIPNLINILRGL 702 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G~~~s~R~~dal~~GCIPVii~d~~~lPf~~~------idw~~~sv~i~~~~~~~l~~~L~~i 702 (791)
.+..+.|+.|...+.+.|. .-+.|||.+|+ |||+.+. .|-+++ ++ ....+.+ .+...|.+.++.+
T Consensus 274 ~~~~~l~~aaDv~V~~~g~---~ti~EAma~g~-PvI~~~~--~pgqe~gn~~~i~~-~g~g~~~--~~~~~la~~i~~l 344 (382)
T PLN02605 274 TNMEEWMGACDCIITKAGP---GTIAEALIRGL-PIILNGY--IPGQEEGNVPYVVD-NGFGAFS--ESPKEIARIVAEW 344 (382)
T ss_pred ccHHHHHHhCCEEEECCCc---chHHHHHHcCC-CEEEecC--CCccchhhHHHHHh-CCceeec--CCHHHHHHHHHHH
Confidence 3578899999988876652 23799999995 7777763 233332 32 3444443 4444444444332
Q ss_pred ---CHHHHHHHHHHHHH
Q 003853 703 ---NETEIQFRLANVQK 716 (791)
Q Consensus 703 ---~~~~~~~m~~~~~~ 716 (791)
.++...+|+++.++
T Consensus 345 l~~~~~~~~~m~~~~~~ 361 (382)
T PLN02605 345 FGDKSDELEAMSENALK 361 (382)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 26677777777664
No 146
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=38.48 E-value=19 Score=44.52 Aligned_cols=41 Identities=29% Similarity=0.863 Sum_probs=30.1
Q ss_pred ccccccccCc-CCCCCCCceecCC----eeec-CCCcccCCCCCccc
Q 003853 271 FCEVPVSSTC-VNQCSGHGHCRGG----FCQC-DSGWYGVDCSIPSV 311 (791)
Q Consensus 271 ~Ce~~~~~~C-~~~Cs~~G~C~~G----~C~C-~~G~~G~~C~~~~~ 311 (791)
.|....+-.| +++|.|+|.|..| .|.| ..||.|..|++...
T Consensus 617 sCs~~~~~~C~~nPC~N~g~C~egwNrfiCDCs~T~~~G~~CerE~t 663 (1591)
T KOG3514|consen 617 SCSLSNEKICESNPCQNGGKCSEGWNRFICDCSGTGFEGRTCEREAT 663 (1591)
T ss_pred ccchhhccccCCCcccCCCCccccccccccccccCcccCccccceee
Confidence 3443333234 5799999999866 7999 56999999998644
No 147
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=37.73 E-value=76 Score=32.93 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=30.2
Q ss_pred hhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEeccc
Q 003853 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGI 670 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~ 670 (791)
.+..+.++.+..-+.|.- ++++.-++||+.+| +|||.++.-
T Consensus 268 ~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g-~pvi~~~~~ 309 (381)
T COG0438 268 EELAELLASADVFVLPSLSEGFGLVLLEAMAAG-TPVIASDVG 309 (381)
T ss_pred HHHHHHHHhCCEEEeccccccchHHHHHHHhcC-CcEEECCCC
Confidence 345667777888888753 35555599999999 999887653
No 148
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=36.85 E-value=1.1e+02 Score=38.06 Aligned_cols=91 Identities=5% Similarity=-0.012 Sum_probs=57.1
Q ss_pred HHHhhccC-eEEEeCC-CCCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC------
Q 003853 631 YHEDLSSS-VFCGVLP-GDGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL------ 702 (791)
Q Consensus 631 y~~~l~~S-~FCl~p~-G~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i------ 702 (791)
+...++.+ ...++|. -.+++.-++|||.+|+ |||.++.=-+ .++|.-..-.+.|+..+...|.+.|..+
T Consensus 636 lyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGl-PVVAT~~GG~--~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~ 712 (784)
T TIGR02470 636 LYRYIADTKGIFVQPALYEAFGLTVLEAMTCGL-PTFATRFGGP--LEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDE 712 (784)
T ss_pred HHHHhhccCcEEEECCcccCCCHHHHHHHHcCC-CEEEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcC
Confidence 34444442 2334443 3456777999999997 5555543222 2444446667778888877666655432
Q ss_pred CHHHHHHHHHHH-HHHHHhheec
Q 003853 703 NETEIQFRLANV-QKVWQRFLYR 724 (791)
Q Consensus 703 ~~~~~~~m~~~~-~~~~~~~~~~ 724 (791)
.++.+.+|.++. +++.++|-|.
T Consensus 713 dp~~~~~ms~~a~~rV~~~FSW~ 735 (784)
T TIGR02470 713 DPSYWQKISQGGLQRIYEKYTWK 735 (784)
T ss_pred CHHHHHHHHHHHHHHHHHhCCHH
Confidence 577788888885 4577899886
No 149
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=36.29 E-value=47 Score=36.54 Aligned_cols=86 Identities=7% Similarity=0.085 Sum_probs=51.4
Q ss_pred hhHHHhhccCeEEEeCCCCCCchhHHHHHhhCCeeEEEecccc------cCCcccCCCCcEEEEecCCC--hhhHHHHHh
Q 003853 629 ENYHEDLSSSVFCGVLPGDGWSGRMEDSILQGCIPVVIQDGIF------LPYENVLNYESFVVRISEDE--IPNLINILR 700 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G~~~s~R~~dal~~GCIPVii~d~~~------lPf~~~idw~~~sv~i~~~~--~~~l~~~L~ 700 (791)
.++.+.|..+...+...| +.-++|||.+|+--|++..... ...+.+.+ ....+.++.++ ...|.+.++
T Consensus 244 ~~~~~~~~~~d~~i~~~g---~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~-~~~g~~~~~~~~~~~~l~~~i~ 319 (357)
T PRK00726 244 DDMAAAYAAADLVICRAG---ASTVAELAAAGLPAILVPLPHAADDHQTANARALVD-AGAALLIPQSDLTPEKLAEKLL 319 (357)
T ss_pred hhHHHHHHhCCEEEECCC---HHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH-CCCEEEEEcccCCHHHHHHHHH
Confidence 467899999999887665 2448999999964444432111 11122334 44566777666 445555444
Q ss_pred cC--CHHHHHHHHHHHHHHH
Q 003853 701 GL--NETEIQFRLANVQKVW 718 (791)
Q Consensus 701 ~i--~~~~~~~m~~~~~~~~ 718 (791)
.+ .++...+|+++.+++.
T Consensus 320 ~ll~~~~~~~~~~~~~~~~~ 339 (357)
T PRK00726 320 ELLSDPERLEAMAEAARALG 339 (357)
T ss_pred HHHcCHHHHHHHHHHHHhcC
Confidence 43 3566677877765443
No 150
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=35.72 E-value=24 Score=23.29 Aligned_cols=9 Identities=33% Similarity=1.150 Sum_probs=8.0
Q ss_pred eeeeCCCCc
Q 003853 139 QCRCFHGFR 147 (791)
Q Consensus 139 ~C~C~~G~~ 147 (791)
.|.|++||.
T Consensus 3 ~C~C~~Gy~ 11 (24)
T PF12662_consen 3 TCSCPPGYQ 11 (24)
T ss_pred EeeCCCCCc
Confidence 699999996
No 151
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=33.59 E-value=1.4e+02 Score=34.71 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=56.2
Q ss_pred chhHHHhhccCeEEEeCC-CCCCchhHHHHHhhCCee----EEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhc-
Q 003853 628 SENYHEDLSSSVFCGVLP-GDGWSGRMEDSILQGCIP----VVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRG- 701 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~-G~~~s~R~~dal~~GCIP----Vii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~- 701 (791)
..+....++.+.-+++|. .+|+..-..|||++|. | ||+|+.-=.+ ++|. -++.|+..|...|.+.|..
T Consensus 346 ~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~-P~~g~vVlS~~~G~~--~~l~---~gllVnP~d~~~lA~aI~~a 419 (456)
T TIGR02400 346 REELMALYRAADVGLVTPLRDGMNLVAKEYVAAQD-PKDGVLILSEFAGAA--QELN---GALLVNPYDIDGMADAIARA 419 (456)
T ss_pred HHHHHHHHHhCcEEEECccccccCccHHHHHHhcC-CCCceEEEeCCCCCh--HHhC---CcEEECCCCHHHHHHHHHHH
Confidence 467788899999888765 3677777999999995 8 8888743222 1232 3677888888766665533
Q ss_pred --CCHHHHHHHHHHHHHH
Q 003853 702 --LNETEIQFRLANVQKV 717 (791)
Q Consensus 702 --i~~~~~~~m~~~~~~~ 717 (791)
.++++..++.+++++.
T Consensus 420 L~~~~~er~~r~~~~~~~ 437 (456)
T TIGR02400 420 LTMPLEEREERHRAMMDK 437 (456)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 3555555555554443
No 152
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=32.12 E-value=2.9e+02 Score=33.92 Aligned_cols=90 Identities=13% Similarity=0.012 Sum_probs=52.0
Q ss_pred hHHHhhccCeEEEeCC-CCCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCCh------hhHHHHHhcC
Q 003853 630 NYHEDLSSSVFCGVLP-GDGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEI------PNLINILRGL 702 (791)
Q Consensus 630 ~y~~~l~~S~FCl~p~-G~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~------~~l~~~L~~i 702 (791)
+..+.|+.+..-+.|. ..+++.-++|||.+| +|||.++.-- ..++|.=..-.+.++..+. ..|.++|..+
T Consensus 584 dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G-~PVVat~~gG--~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l 660 (694)
T PRK15179 584 RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSG-VPVVTTLAGG--AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMC 660 (694)
T ss_pred hHHHHHHhcCEEEeccccccchHHHHHHHHcC-CeEEEECCCC--hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhCh
Confidence 4566777777666653 346677799999999 5888887532 2345544555666665443 2444545443
Q ss_pred CHHHHHHHHHHHHH-HHHhheec
Q 003853 703 NETEIQFRLANVQK-VWQRFLYR 724 (791)
Q Consensus 703 ~~~~~~~m~~~~~~-~~~~~~~~ 724 (791)
. .-.+|+++.++ +.++|-|.
T Consensus 661 ~--~~~~l~~~ar~~a~~~FS~~ 681 (694)
T PRK15179 661 A--ADPGIARKAADWASARFSLN 681 (694)
T ss_pred h--ccHHHHHHHHHHHHHhCCHH
Confidence 2 12345555544 33456443
No 153
>PRK10125 putative glycosyl transferase; Provisional
Probab=31.96 E-value=1.8e+02 Score=33.02 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=47.4
Q ss_pred chhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHH
Q 003853 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINI 698 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~ 698 (791)
..+..+.|+.+...+.|.- +++..-+.|||++| +|||.+|-=-+ .|+++=. -.+.++..|...|.+.
T Consensus 297 ~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G-~PVVat~~gG~--~Eiv~~~-~G~lv~~~d~~~La~~ 364 (405)
T PRK10125 297 KRKLMSALNQMDALVFSSRVDNYPLILCEALSIG-VPVIATHSDAA--REVLQKS-GGKTVSEEEVLQLAQL 364 (405)
T ss_pred HHHHHHHHHhCCEEEECCccccCcCHHHHHHHcC-CCEEEeCCCCh--HHhEeCC-cEEEECCCCHHHHHhc
Confidence 3456778888886666553 56677799999999 58988875443 3456533 5788899998877763
No 154
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=30.39 E-value=1.2e+02 Score=33.06 Aligned_cols=86 Identities=9% Similarity=0.113 Sum_probs=52.0
Q ss_pred hhHHHhhccCeEEEeCCCCCCchhHHHHHhhCCeeEEEecc-c------ccCCcccCCCCcEEEEecCC--ChhhHHHHH
Q 003853 629 ENYHEDLSSSVFCGVLPGDGWSGRMEDSILQGCIPVVIQDG-I------FLPYENVLNYESFVVRISED--EIPNLINIL 699 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G~~~s~R~~dal~~GCIPVii~d~-~------~lPf~~~idw~~~sv~i~~~--~~~~l~~~L 699 (791)
.++.+.|+.+.+-+.+.| +.-++|||.+|. |||+.+. . ..+.+.+.+ ....+.++.. +...|.+.|
T Consensus 244 ~~~~~~l~~ad~~v~~sg---~~t~~Eam~~G~-Pvv~~~~~~~~~~~~~~~~~~l~~-~g~g~~v~~~~~~~~~l~~~i 318 (350)
T cd03785 244 DDMAAAYAAADLVISRAG---ASTVAELAALGL-PAILIPLPYAADDHQTANARALVK-AGAAVLIPQEELTPERLAAAL 318 (350)
T ss_pred hhHHHHHHhcCEEEECCC---HhHHHHHHHhCC-CEEEeecCCCCCCcHHHhHHHHHh-CCCEEEEecCCCCHHHHHHHH
Confidence 577889999998887665 234899999996 5555432 1 111222333 4456666654 555555555
Q ss_pred hcC--CHHHHHHHHHHHHHHHH
Q 003853 700 RGL--NETEIQFRLANVQKVWQ 719 (791)
Q Consensus 700 ~~i--~~~~~~~m~~~~~~~~~ 719 (791)
+.+ +++...+|+++.++..+
T Consensus 319 ~~ll~~~~~~~~~~~~~~~~~~ 340 (350)
T cd03785 319 LELLSDPERLKAMAEAARSLAR 340 (350)
T ss_pred HHHhcCHHHHHHHHHHHHhcCC
Confidence 443 45667777777664433
No 155
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=25.51 E-value=42 Score=42.42 Aligned_cols=33 Identities=27% Similarity=0.703 Sum_probs=27.4
Q ss_pred CcCCCCCCCceec----CCeeecC-CCcccCCCCCccc
Q 003853 279 TCVNQCSGHGHCR----GGFCQCD-SGWYGVDCSIPSV 311 (791)
Q Consensus 279 ~C~~~Cs~~G~C~----~G~C~C~-~G~~G~~C~~~~~ 311 (791)
+-||.|..+|.|. ...|.|. .||+|..|..+..
T Consensus 548 ClPN~CehgG~C~Qs~~~f~C~C~~TGY~GatCHtsi~ 585 (1306)
T KOG3516|consen 548 CLPNPCEHGGKCSQSWDDFECNCELTGYKGATCHTSIY 585 (1306)
T ss_pred cCCccccCCCcccccccceeEeccccccccccccCCCc
Confidence 3468899999997 5599997 8999999997644
No 156
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=25.27 E-value=1.8e+02 Score=31.30 Aligned_cols=71 Identities=13% Similarity=-0.017 Sum_probs=44.0
Q ss_pred chhHHHhhccCeEEEeCCC-CCCchhHHHHHhhCCeeEEEecccccCCcccCCCCcEEEEecCCChhhHHHHHhcC
Q 003853 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNYESFVVRISEDEIPNLINILRGL 702 (791)
Q Consensus 628 ~~~y~~~l~~S~FCl~p~G-~~~s~R~~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~i~~~~~~~l~~~L~~i 702 (791)
..+..+.++++.+.+.|.- ++++.-++|||.+|+- ||.++.-.. .+++.= ........++..++.+.+..+
T Consensus 257 ~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~P-vI~s~~~~~--~~~i~~-~~~~~~~~~~~~~~a~~i~~l 328 (358)
T cd03812 257 RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLP-CILSDTITK--EVDLTD-LVKFLSLDESPEIWAEEILKL 328 (358)
T ss_pred cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCC-EEEEcCCch--hhhhcc-CccEEeCCCCHHHHHHHHHHH
Confidence 4566788999999998865 3556779999999985 555553222 233322 334444455555555555444
No 157
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=24.24 E-value=96 Score=35.14 Aligned_cols=88 Identities=10% Similarity=0.004 Sum_probs=50.8
Q ss_pred hhHHHhhccCeEEEeCCCC--CCchhHHHHHhhCCeeEEEecccccCCccc---CCCCcEEEEecCCChhhHHHHHhcC-
Q 003853 629 ENYHEDLSSSVFCGVLPGD--GWSGRMEDSILQGCIPVVIQDGIFLPYENV---LNYESFVVRISEDEIPNLINILRGL- 702 (791)
Q Consensus 629 ~~y~~~l~~S~FCl~p~G~--~~s~R~~dal~~GCIPVii~d~~~lPf~~~---idw~~~sv~i~~~~~~~l~~~L~~i- 702 (791)
.+..+.++.+..++++... +.+.-++|||.+|+ |||.++... -|.++ +.-..+.+. ..|...|.+.|..+
T Consensus 311 ~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~-PVI~g~~~~-~~~e~~~~~~~~g~~~~--~~d~~~La~~l~~ll 386 (425)
T PRK05749 311 GELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGV-PVISGPHTF-NFKEIFERLLQAGAAIQ--VEDAEDLAKAVTYLL 386 (425)
T ss_pred HHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCC-CEEECCCcc-CHHHHHHHHHHCCCeEE--ECCHHHHHHHHHHHh
Confidence 4667888999887775332 23344899999995 888865421 12222 111234433 34444444444432
Q ss_pred -CHHHHHHHHHHHHHHHHh
Q 003853 703 -NETEIQFRLANVQKVWQR 720 (791)
Q Consensus 703 -~~~~~~~m~~~~~~~~~~ 720 (791)
+++...+|.++.+++...
T Consensus 387 ~~~~~~~~m~~~a~~~~~~ 405 (425)
T PRK05749 387 TDPDARQAYGEAGVAFLKQ 405 (425)
T ss_pred cCHHHHHHHHHHHHHHHHh
Confidence 466777888777765544
No 158
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=21.83 E-value=1.9e+02 Score=34.28 Aligned_cols=90 Identities=14% Similarity=0.262 Sum_probs=54.4
Q ss_pred CchhHHHhhccCeEEEeCCCCCC-chhHHHHHhhCCeeEEEecccccC-----------------------Ccc-cCCCC
Q 003853 627 RSENYHEDLSSSVFCGVLPGDGW-SGRMEDSILQGCIPVVIQDGIFLP-----------------------YEN-VLNYE 681 (791)
Q Consensus 627 ~~~~y~~~l~~S~FCl~p~G~~~-s~R~~dal~~GCIPVii~d~~~lP-----------------------f~~-~idw~ 681 (791)
...+|.++|++|+.= +=-|..+ ++-=+|||..|| |+|...+..| +-+ .|. .
T Consensus 331 ~~~ef~~lL~~akvf-iGlGfP~EgPaPlEAia~G~--vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG-~ 406 (559)
T PF15024_consen 331 SGDEFQQLLRKAKVF-IGLGFPYEGPAPLEAIANGC--VFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIG-E 406 (559)
T ss_pred CHHHHHHHHHhhhEe-eecCCCCCCCChHHHHHcCC--ccccccCCCCCcccccccccCCCCcceeccCChHHHhhCC-C
Confidence 357899999999963 3345444 777899999999 5554444333 222 233 4
Q ss_pred cEEEEecCCChhhHHHHHhcCCHHH----------HHHHHHHHHHHHHh
Q 003853 682 SFVVRISEDEIPNLINILRGLNETE----------IQFRLANVQKVWQR 720 (791)
Q Consensus 682 ~~sv~i~~~~~~~l~~~L~~i~~~~----------~~~m~~~~~~~~~~ 720 (791)
-++..|+..+..+|.+++++|-..+ -+.|.+++..+.++
T Consensus 407 PhVytVd~~n~~~v~~Avk~il~~~v~Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 407 PHVYTVDINNSTEVEAAVKAILATPVEPYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred CeEEEEcCCCHHHHHHHHHHHHhcCCCCcCCcccCHHHHHHHHHHHHHh
Confidence 4566677777666666555542222 24566666554444
No 159
>KOG3509 consensus Basement membrane-specific heparan sulfate proteoglycan (HSPG) core protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.91 E-value=3.3e+02 Score=34.48 Aligned_cols=37 Identities=32% Similarity=0.774 Sum_probs=25.1
Q ss_pred ccCCCC-CCCCCCCCEEec--CCCeeeeCCCCcCCCCCcc
Q 003853 118 IGGKSC-KSDCSGQGVCNH--ELGQCRCFHGFRGKGCSER 154 (791)
Q Consensus 118 ~~~~~C-~~~Cs~~G~C~~--~~G~C~C~~G~~G~~Ce~~ 154 (791)
+.+..| .-.|.-.|-|.. +..+|.|++||+|+.|+..
T Consensus 404 c~g~~c~~~p~~~~g~c~p~~~~~~c~c~~g~~G~~c~d~ 443 (964)
T KOG3509|consen 404 CLGDVCWRIPCQHDGPCLQTLEGKQCLCPPGYTGDSCEDC 443 (964)
T ss_pred cCCCccccccCCCCccccccccccceeccccccCchhhcc
Confidence 334444 345666666643 2347999999999999974
No 160
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=20.48 E-value=96 Score=27.87 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=20.2
Q ss_pred chhhHHHHHHHhhcCCc-ccCCcCCccEEEEe
Q 003853 393 LYGSQMAFYESILASPH-RTLNGEEADFFFVP 423 (791)
Q Consensus 393 ~y~~e~~~~e~l~~s~~-rT~dP~eAd~FyVP 423 (791)
+|.+|. +...|.+.++ .|.+|++||+++|=
T Consensus 13 ~~Dse~-i~~~l~~~G~~~~~~~e~AD~iiiN 43 (98)
T PF00919_consen 13 QYDSER-IASILQAAGYEIVDDPEEADVIIIN 43 (98)
T ss_pred HHHHHH-HHHHHHhcCCeeecccccCCEEEEE
Confidence 344554 3355555554 79999999999853
Done!