BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003854
(791 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WEO|A Chain A, Solution Structure Of Ring-Finger In The Catalytic
Subunit (Irx3) Of Cellulose Synthase
Length = 93
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 56/69 (81%)
Query: 29 KSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88
K +K L GQ C+IC D+I +T G+ FVACNEC FP CRPCYEYERREG Q CPQCKTRY
Sbjct: 9 KPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68
Query: 89 KRLKGSPRV 97
KRL+GSPRV
Sbjct: 69 KRLRGSPRV 77
>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
Translocation Intermediate
Length = 802
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 529 LVYVSREKRPGFEHHKKAGAMNA-LVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM 587
+VY +RE+ H KAG M+A L R+ L ++ D DH + R F+
Sbjct: 214 VVYSTRER----NEHAKAGNMSAALERLKGEL-----VVVFDADHVPSRDFLARTVGYFV 264
Query: 588 MDPQSGKKICYVQFPQRF---DGIDRH----DRYSNRNVVFFDINMKGLDGIQGPIYVGT 640
DP + VQ P F D I R+ DR N +F+ +GLD G + G+
Sbjct: 265 EDPD----LFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGS 320
Query: 641 GCVFRRQAL 649
V RR+AL
Sbjct: 321 AAVLRRRAL 329
>pdb|3F8U|B Chain B, TapasinERP57 HETERODIMER
pdb|3F8U|D Chain D, TapasinERP57 HETERODIMER
Length = 401
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 370 DPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKK 429
+P +EP LIT TV+ + P +V + D L+F + TSE A P
Sbjct: 144 EPQQEPVLITMATVVLTVLTHTPAPRV--RLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
Query: 430 FNIE 433
F +E
Sbjct: 202 FGLE 205
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 39 CQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87
C IC D ++ T + EC C C R GN+ CP C+ +
Sbjct: 37 CPICLDMLKNT------MTTKECLHRFCADCIITALRSGNKECPTCRKK 79
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 38 TCQICEDEI-EITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSP 95
+C IC D EI NG + EC C C + N CP C+ + + P
Sbjct: 9 SCPICMDGYSEIVQNGR-LIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHP 65
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 38 TCQICEDEI-EITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSP 95
+C IC D EI NG + EC C C + N CP C+ + + P
Sbjct: 74 SCPICMDGYSEIVQNGR-LIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHP 130
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 38 TCQICEDEI-EITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSP 95
+C IC D EI NG + EC C C + N CP C+ + + P
Sbjct: 5 SCPICMDGYSEIVQNGR-LIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHP 61
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 39 CQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87
C IC D ++ T + EC C C R GN+ CP C+ +
Sbjct: 57 CPICLDMLKNT------MTTKECLHRFCADCIITALRSGNKECPTCRKK 99
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 38 TCQICEDEI-EITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSP 95
+C IC D EI NG V+ EC C C + N CP C+ + + P
Sbjct: 12 SCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHP 68
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 39 CQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87
C IC D ++ T + EC C C R GN+ CP C+ +
Sbjct: 56 CPICLDMLKNT------MTTKECLHRFCADCIITALRSGNKECPTCRKK 98
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 38 TCQICEDEI-EITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87
+C IC D EI NG V+ EC C C + N CP C+ +
Sbjct: 17 SCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKNAN-TCPTCRKK 65
>pdb|1E4U|A Chain A, N-Terminal Ring Finger Domain Of Human Not-4
Length = 78
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 39 CQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88
C +C + +EI D F C C + +CR C+ R + N CP C+ Y
Sbjct: 14 CPLCMEPLEIDDIN--FFPCT-CGYQICRFCWHRIRTDENGLCPACRKPY 60
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 14/146 (9%)
Query: 53 EPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY--------KRLKGSPRVXXXXXXX 104
+P + E F V R E R+ G C TR R + P
Sbjct: 34 KPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVGDSRFRVLPDGTVLVKRH 93
Query: 105 XXXXXXXXXXYGNLDGFGPQHVSDAALSARLNASGIPTRSELDSAPLSSNIPLLTYGEED 164
D G +H ++ A++++ + SG S SS +P+LT+ E
Sbjct: 94 VKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSR------SSKLPVLTFPETH 147
Query: 165 DDISSDRHALIVPPYMGHGNRVHPMP 190
+ + ++PP N P P
Sbjct: 148 TGLKRKKRDWVIPPIKVSENERGPFP 173
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 235 QVVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKI 279
++ K+E GS+ +F+ G +D D M+ GR P S+ L + + +
Sbjct: 277 KITKNEDGSNHVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGV 321
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 235 QVVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKI 279
++ K+E GS+ +F+ G +D D M+ GR P S+ L + + +
Sbjct: 277 KITKNEDGSNHVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGV 321
>pdb|1SXR|A Chain A, Drosophila Peptidoglycan Recognition Protein (Pgrp)-Sa
pdb|1SXR|B Chain B, Drosophila Peptidoglycan Recognition Protein (Pgrp)-Sa
Length = 183
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 614 YSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDA 654
Y + F DI+ L G G +Y GTG R YGY+A
Sbjct: 64 YHQNELDFNDISYNFLIGNDGIVYEGTGWGLRGAHTYGYNA 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,377,850
Number of Sequences: 62578
Number of extensions: 969005
Number of successful extensions: 2058
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2050
Number of HSP's gapped (non-prelim): 19
length of query: 791
length of database: 14,973,337
effective HSP length: 107
effective length of query: 684
effective length of database: 8,277,491
effective search space: 5661803844
effective search space used: 5661803844
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)