Query 003854
Match_columns 791
No_of_seqs 329 out of 864
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 13:13:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02436 cellulose synthase A 100.0 5E-254 1E-258 2172.3 55.5 785 1-790 1-793 (1094)
2 PLN02400 cellulose synthase 100.0 4E-252 9E-257 2162.9 54.8 772 1-790 1-782 (1085)
3 PLN02638 cellulose synthase A 100.0 3E-239 6E-244 2054.5 53.0 756 23-790 4-777 (1079)
4 PLN02189 cellulose synthase 100.0 1E-231 3E-236 1986.0 52.2 731 1-790 1-738 (1040)
5 PLN02915 cellulose synthase A 100.0 1E-230 2E-235 1978.7 50.2 707 31-790 10-741 (1044)
6 PLN02195 cellulose synthase A 100.0 5E-212 1E-216 1814.4 48.7 671 33-790 3-673 (977)
7 PLN02248 cellulose synthase-li 100.0 3E-187 7E-192 1617.9 47.8 666 4-790 89-836 (1135)
8 PF03552 Cellulose_synt: Cellu 100.0 2E-145 4E-150 1236.9 26.9 423 362-790 1-423 (720)
9 PLN02190 cellulose synthase-li 100.0 4E-144 9E-149 1228.8 35.9 449 264-790 7-459 (756)
10 PLN02893 Cellulose synthase-li 100.0 1E-135 3E-140 1162.2 36.1 431 263-790 9-446 (734)
11 PF14569 zf-UDP: Zinc-binding 100.0 3.1E-44 6.7E-49 310.3 4.4 80 28-107 1-80 (80)
12 TIGR03030 CelA cellulose synth 100.0 1.2E-34 2.5E-39 336.3 20.6 256 283-655 57-328 (713)
13 PRK11498 bcsA cellulose syntha 100.0 9E-34 2E-38 332.9 20.4 236 285-655 189-439 (852)
14 cd04191 Glucan_BSP_ModH Glucan 99.9 7.1E-22 1.5E-26 204.4 13.9 110 527-649 67-183 (254)
15 PRK05454 glucosyltransferase M 99.8 4.9E-20 1.1E-24 214.3 19.9 250 281-650 40-309 (691)
16 COG1215 Glycosyltransferases, 99.8 6.5E-18 1.4E-22 181.3 15.7 169 359-649 53-226 (439)
17 cd06421 CESA_CelA_like CESA_Ce 99.6 1.7E-15 3.7E-20 147.8 12.4 169 360-650 1-173 (234)
18 PRK14583 hmsR N-glycosyltransf 99.6 7E-15 1.5E-19 162.3 15.8 170 358-655 73-251 (444)
19 cd06437 CESA_CaSu_A2 Cellulose 99.6 4.1E-14 8.9E-19 140.2 15.2 175 360-654 1-182 (232)
20 TIGR03111 glyc2_xrt_Gpos1 puta 99.5 2.2E-13 4.7E-18 150.7 16.6 123 357-603 46-169 (439)
21 PRK11204 N-glycosyltransferase 99.5 4.4E-13 9.6E-18 145.4 15.6 171 357-655 51-230 (420)
22 cd06427 CESA_like_2 CESA_like_ 99.5 4.9E-13 1.1E-17 134.0 12.8 174 360-654 1-181 (241)
23 cd06435 CESA_NdvC_like NdvC_li 99.4 1.8E-12 3.8E-17 128.1 14.8 165 364-649 2-170 (236)
24 PF13641 Glyco_tranf_2_3: Glyc 99.4 4.7E-14 1E-18 138.2 3.3 172 360-654 1-179 (228)
25 cd06436 GlcNAc-1-P_transferase 99.4 1.1E-12 2.5E-17 127.8 11.0 115 529-650 52-176 (191)
26 PRK14716 bacteriophage N4 adso 99.4 6.3E-12 1.4E-16 142.6 15.3 171 358-650 64-245 (504)
27 TIGR03472 HpnI hopanoid biosyn 99.3 1.8E-11 3.9E-16 132.5 14.9 172 358-654 39-220 (373)
28 cd06438 EpsO_like EpsO protein 99.3 1.9E-11 4.1E-16 117.6 10.7 104 543-653 62-173 (183)
29 PRK11234 nfrB bacteriophage N4 99.2 5.6E-11 1.2E-15 140.0 13.4 97 543-646 132-239 (727)
30 cd04192 GT_2_like_e Subfamily 99.2 1E-10 2.2E-15 113.4 11.3 170 364-654 1-175 (229)
31 cd06439 CESA_like_1 CESA_like_ 99.1 5.3E-10 1.1E-14 111.5 14.1 170 356-654 25-198 (251)
32 cd02520 Glucosylceramide_synth 99.1 3E-10 6.4E-15 110.7 11.7 137 360-650 1-137 (196)
33 cd06434 GT2_HAS Hyaluronan syn 99.1 4E-10 8.6E-15 110.8 11.7 98 543-650 63-165 (235)
34 cd04190 Chitin_synth_C C-termi 99.0 4.7E-10 1E-14 114.1 7.5 87 560-652 72-164 (244)
35 PF14570 zf-RING_4: RING/Ubox 99.0 1.5E-10 3.2E-15 93.7 2.9 48 39-89 1-48 (48)
36 PRK15489 nfrB bacteriophage N4 99.0 3E-09 6.6E-14 125.0 13.8 101 543-650 140-250 (703)
37 TIGR03469 HonB hopene-associat 99.0 5.4E-09 1.2E-13 114.0 13.7 133 356-602 36-169 (384)
38 cd06423 CESA_like CESA_like is 98.9 1.2E-08 2.7E-13 91.8 12.3 111 529-654 55-174 (180)
39 cd04184 GT2_RfbC_Mx_like Myxoc 98.9 1.7E-08 3.7E-13 96.9 13.1 165 360-654 1-169 (202)
40 cd04195 GT2_AmsE_like GT2_AmsE 98.9 3.1E-08 6.6E-13 95.3 13.4 101 529-649 57-162 (201)
41 PF00535 Glycos_transf_2: Glyc 98.9 3.3E-09 7.1E-14 96.1 6.3 111 528-650 54-166 (169)
42 cd04196 GT_2_like_d Subfamily 98.9 1.6E-08 3.5E-13 97.2 11.3 110 529-652 56-167 (214)
43 cd02525 Succinoglycan_BP_ExoA 98.8 3.4E-08 7.3E-13 97.1 11.8 117 362-603 2-118 (249)
44 cd06433 GT_2_WfgS_like WfgS an 98.7 1.7E-07 3.6E-12 88.4 11.6 93 544-650 62-155 (202)
45 cd06420 GT2_Chondriotin_Pol_N 98.6 4.4E-07 9.5E-12 85.8 12.2 79 544-655 66-147 (182)
46 PLN02726 dolichyl-phosphate be 98.6 5.5E-07 1.2E-11 91.1 13.4 109 529-652 70-181 (243)
47 cd06442 DPM1_like DPM1_like re 98.6 3.1E-07 6.8E-12 89.6 10.4 100 543-652 64-166 (224)
48 cd04179 DPM_DPG-synthase_like 98.6 2.8E-07 6.1E-12 87.1 9.4 109 529-652 56-166 (185)
49 cd04186 GT_2_like_c Subfamily 98.5 5.1E-07 1.1E-11 82.8 10.5 66 543-650 60-125 (166)
50 cd02510 pp-GalNAc-T pp-GalNAc- 98.5 1.1E-06 2.3E-11 91.9 12.3 109 364-589 2-110 (299)
51 cd02522 GT_2_like_a GT_2_like_ 98.5 1.6E-06 3.4E-11 84.5 12.3 95 544-654 59-156 (221)
52 cd04185 GT_2_like_b Subfamily 98.4 3.4E-06 7.5E-11 81.6 11.3 72 544-650 63-134 (202)
53 cd04187 DPM1_like_bac Bacteria 98.3 2.7E-06 5.8E-11 81.2 9.3 103 529-650 57-160 (181)
54 cd02526 GT2_RfbF_like RfbF is 98.3 3.7E-06 8E-11 83.0 10.1 115 529-655 49-172 (237)
55 cd06913 beta3GnTL1_like Beta 1 98.1 1.8E-05 3.8E-10 78.2 11.3 41 364-409 1-41 (219)
56 cd04188 DPG_synthase DPG_synth 98.1 1.5E-05 3.3E-10 78.2 10.0 53 544-605 69-121 (211)
57 PRK10073 putative glycosyl tra 98.0 4.1E-05 9E-10 82.6 12.1 46 358-409 4-49 (328)
58 PRK10018 putative glycosyl tra 98.0 4.6E-05 9.9E-10 80.9 11.8 109 358-588 3-111 (279)
59 PTZ00260 dolichyl-phosphate be 98.0 0.00013 2.9E-09 79.1 14.9 41 544-589 149-189 (333)
60 cd00761 Glyco_tranf_GTA_type G 97.9 0.00011 2.4E-09 64.6 10.8 51 543-602 63-114 (156)
61 TIGR01556 rhamnosyltran L-rham 97.7 0.00037 8E-09 72.1 11.6 110 529-649 47-160 (281)
62 PRK13915 putative glucosyl-3-p 97.7 0.00025 5.5E-09 76.2 10.6 51 543-601 101-152 (306)
63 PF13632 Glyco_trans_2_3: Glyc 97.6 4.3E-05 9.3E-10 74.0 3.8 83 564-653 1-91 (193)
64 COG2943 MdoH Membrane glycosyl 97.5 0.0036 7.9E-08 72.2 17.2 113 529-654 214-336 (736)
65 PF10111 Glyco_tranf_2_2: Glyc 97.4 0.0011 2.4E-08 69.7 11.7 108 543-656 74-190 (281)
66 PRK10063 putative glycosyl tra 97.4 0.0014 3.1E-08 68.1 11.1 46 360-409 1-47 (248)
67 PF13506 Glyco_transf_21: Glyc 97.2 0.00034 7.3E-09 69.5 4.7 96 542-650 15-114 (175)
68 COG0463 WcaA Glycosyltransfera 97.1 0.0039 8.4E-08 55.0 9.7 45 359-409 2-46 (291)
69 PRK10714 undecaprenyl phosphat 96.9 0.0083 1.8E-07 65.0 12.4 41 543-588 76-116 (325)
70 COG5175 MOT2 Transcriptional r 96.2 0.0021 4.6E-08 70.4 2.0 48 38-88 16-63 (480)
71 cd02514 GT13_GLCNAC-TI GT13_GL 96.2 0.049 1.1E-06 60.2 12.4 89 542-654 83-176 (334)
72 cd02511 Beta4Glucosyltransfera 96.2 0.034 7.3E-07 56.3 10.3 42 544-590 58-99 (229)
73 COG1216 Predicted glycosyltran 95.8 0.1 2.2E-06 55.6 12.0 69 528-607 57-126 (305)
74 PF14446 Prok-RING_1: Prokaryo 95.6 0.0082 1.8E-07 50.4 2.4 45 36-88 5-51 (54)
75 TIGR00570 cdk7 CDK-activating 95.0 0.027 5.9E-07 61.6 4.6 54 36-91 3-56 (309)
76 cd00162 RING RING-finger (Real 89.4 0.4 8.8E-06 35.6 3.1 44 38-87 1-44 (45)
77 PF05290 Baculo_IE-1: Baculovi 87.1 0.4 8.6E-06 47.2 2.2 52 37-92 81-135 (140)
78 smart00504 Ubox Modified RING 82.6 1.5 3.1E-05 36.1 3.3 44 38-89 3-46 (63)
79 PRK14559 putative protein seri 77.1 1.2 2.5E-05 53.7 1.4 23 66-89 30-52 (645)
80 KOG0823 Predicted E3 ubiquitin 76.3 2.6 5.6E-05 44.9 3.5 46 36-89 47-95 (230)
81 KOG2978 Dolichol-phosphate man 76.3 7.2 0.00016 41.1 6.6 52 527-588 63-114 (238)
82 PHA02929 N1R/p28-like protein; 74.9 3.7 7.9E-05 44.0 4.3 55 34-89 172-227 (238)
83 KOG2977 Glycosyltransferase [G 74.2 17 0.00036 40.4 9.0 58 361-432 68-131 (323)
84 PHA02862 5L protein; Provision 73.5 2.5 5.3E-05 42.4 2.4 49 36-90 2-54 (156)
85 smart00659 RPOLCX RNA polymera 73.4 2.2 4.7E-05 34.5 1.7 26 38-65 4-29 (44)
86 PF13639 zf-RING_2: Ring finge 72.7 2.9 6.2E-05 32.6 2.2 43 38-85 2-44 (44)
87 PF03966 Trm112p: Trm112p-like 71.4 0.82 1.8E-05 39.4 -1.2 27 67-93 42-68 (68)
88 PF03604 DNA_RNApol_7kD: DNA d 71.0 2.9 6.4E-05 31.9 1.8 26 38-65 2-27 (32)
89 PF14447 Prok-RING_4: Prokaryo 67.2 2.5 5.4E-05 36.0 0.8 46 36-91 7-52 (55)
90 KOG3800 Predicted E3 ubiquitin 66.7 4.6 0.0001 44.4 2.9 52 38-91 2-53 (300)
91 smart00184 RING Ring finger. E 64.8 6.7 0.00014 27.8 2.6 39 39-84 1-39 (39)
92 PHA02825 LAP/PHD finger-like p 64.4 5.6 0.00012 40.5 2.8 51 35-91 7-61 (162)
93 PLN03208 E3 ubiquitin-protein 64.0 7.3 0.00016 40.7 3.6 52 31-89 13-79 (193)
94 PF02318 FYVE_2: FYVE-type zin 63.5 1.2 2.6E-05 42.2 -1.9 47 35-84 53-100 (118)
95 KOG2932 E3 ubiquitin ligase in 62.9 5 0.00011 44.6 2.3 46 47-92 82-137 (389)
96 PF13712 Glyco_tranf_2_5: Glyc 60.1 23 0.00051 36.8 6.6 44 544-591 41-85 (217)
97 KOG2068 MOT2 transcription fac 59.7 7 0.00015 43.6 2.8 52 36-91 249-300 (327)
98 KOG0006 E3 ubiquitin-protein l 58.6 7.8 0.00017 43.3 2.9 40 31-71 310-352 (446)
99 PF14471 DUF4428: Domain of un 56.8 6 0.00013 32.9 1.3 28 38-71 1-28 (51)
100 PF00097 zf-C3HC4: Zinc finger 54.5 10 0.00022 28.8 2.1 40 39-84 1-41 (41)
101 smart00249 PHD PHD zinc finger 54.4 7.8 0.00017 29.1 1.5 43 38-84 1-47 (47)
102 PRK00420 hypothetical protein; 54.4 5.4 0.00012 38.4 0.7 30 56-91 24-53 (112)
103 KOG3737 Predicted polypeptide 53.2 50 0.0011 38.3 8.0 46 355-403 150-195 (603)
104 PF13920 zf-C3HC4_3: Zinc fing 53.1 14 0.0003 29.6 2.8 45 38-90 4-49 (50)
105 PF13923 zf-C3HC4_2: Zinc fing 52.8 13 0.00028 28.4 2.5 39 39-84 1-39 (39)
106 PRK00398 rpoP DNA-directed RNA 52.5 9.5 0.00021 30.5 1.8 27 38-65 5-31 (46)
107 smart00291 ZnF_ZZ Zinc-binding 50.4 14 0.0003 29.4 2.4 36 36-76 4-40 (44)
108 PF07282 OrfB_Zn_ribbon: Putat 50.2 11 0.00025 31.9 2.0 33 35-68 27-59 (69)
109 cd02249 ZZ Zinc finger, ZZ typ 47.9 15 0.00032 29.4 2.2 31 38-73 2-33 (46)
110 PRK15103 paraquat-inducible me 47.1 15 0.00032 42.2 2.9 29 54-91 220-248 (419)
111 PRK04023 DNA polymerase II lar 47.0 13 0.00027 47.1 2.4 45 34-89 624-674 (1121)
112 cd02335 ZZ_ADA2 Zinc finger, Z 45.9 17 0.00037 29.6 2.3 30 38-71 2-32 (49)
113 PF07649 C1_3: C1-like domain; 44.5 13 0.00029 27.2 1.3 28 38-69 2-29 (30)
114 PF13896 Glyco_transf_49: Glyc 44.2 20 0.00044 39.5 3.3 41 560-601 126-166 (317)
115 TIGR00155 pqiA_fam integral me 44.1 14 0.0003 42.3 2.1 30 54-91 214-243 (403)
116 KOG0457 Histone acetyltransfer 43.7 10 0.00022 43.8 0.9 58 36-100 14-74 (438)
117 PRK07220 DNA topoisomerase I; 43.1 13 0.00028 45.6 1.7 48 37-86 590-643 (740)
118 PRK12495 hypothetical protein; 42.9 13 0.00028 39.7 1.4 30 54-90 41-70 (226)
119 PHA02926 zinc finger-like prot 42.1 29 0.00062 37.4 3.9 61 33-93 167-234 (242)
120 COG0551 TopA Zn-finger domain 42.0 18 0.00039 35.0 2.2 49 34-86 15-68 (140)
121 PRK03982 heat shock protein Ht 41.6 1E+02 0.0023 33.3 8.1 67 324-403 49-115 (288)
122 TIGR02443 conserved hypothetic 40.9 19 0.0004 31.3 1.9 31 34-64 7-40 (59)
123 PF11077 DUF2616: Protein of u 39.0 10 0.00023 39.0 0.1 26 39-68 55-81 (173)
124 COG5114 Histone acetyltransfer 38.9 11 0.00024 42.1 0.3 36 38-77 7-43 (432)
125 KOG2547 Ceramide glucosyltrans 38.7 7.1E+02 0.015 29.2 15.0 98 542-650 155-257 (431)
126 COG0068 HypF Hydrogenase matur 37.4 25 0.00055 43.1 2.9 59 34-93 99-190 (750)
127 PF14634 zf-RING_5: zinc-RING 37.2 35 0.00077 26.8 2.8 43 39-86 2-44 (44)
128 PF09484 Cas_TM1802: CRISPR-as 36.6 19 0.0004 42.9 1.7 41 33-73 195-251 (593)
129 TIGR00599 rad18 DNA repair pro 36.6 30 0.00065 39.8 3.2 53 29-89 18-71 (397)
130 PRK04296 thymidine kinase; Pro 36.2 18 0.00039 36.6 1.3 35 37-71 141-186 (190)
131 PRK14890 putative Zn-ribbon RN 35.8 43 0.00094 29.1 3.3 49 36-86 7-56 (59)
132 KOG1941 Acetylcholine receptor 35.7 16 0.00034 42.0 0.9 69 35-105 364-437 (518)
133 PF06906 DUF1272: Protein of u 35.2 42 0.00091 29.1 3.0 47 38-90 7-53 (57)
134 PF00628 PHD: PHD-finger; Int 34.7 30 0.00065 27.5 2.1 45 38-86 1-50 (51)
135 PF00265 TK: Thymidine kinase; 33.4 14 0.0003 37.5 -0.0 34 37-70 138-176 (176)
136 cd00350 rubredoxin_like Rubred 33.4 14 0.00031 27.8 0.1 18 72-89 11-28 (33)
137 PRK07219 DNA topoisomerase I; 33.4 24 0.00053 43.7 2.0 53 36-91 688-746 (822)
138 cd02336 ZZ_RSC8 Zinc finger, Z 33.3 33 0.00072 28.0 2.1 32 38-74 2-34 (45)
139 COG1996 RPC10 DNA-directed RNA 32.9 22 0.00047 29.9 1.0 28 37-65 7-34 (49)
140 PRK12380 hydrogenase nickel in 32.8 13 0.00027 35.4 -0.4 26 55-87 70-95 (113)
141 PRK14973 DNA topoisomerase I; 32.3 30 0.00066 43.7 2.6 48 37-87 589-644 (936)
142 PF11238 DUF3039: Protein of u 32.0 15 0.00032 31.9 -0.1 12 79-90 45-56 (58)
143 PRK11827 hypothetical protein; 31.9 31 0.00068 30.0 1.8 32 64-95 12-43 (60)
144 PRK00564 hypA hydrogenase nick 31.8 17 0.00036 34.8 0.2 28 56-90 72-100 (117)
145 COG4739 Uncharacterized protei 31.7 26 0.00056 35.7 1.5 45 45-89 77-121 (182)
146 PF01155 HypA: Hydrogenase exp 31.6 9.2 0.0002 36.2 -1.5 30 55-91 70-99 (113)
147 KOG0311 Predicted E3 ubiquitin 30.9 13 0.00029 42.0 -0.7 45 38-88 45-89 (381)
148 PRK11595 DNA utilization prote 30.9 31 0.00067 36.1 2.0 38 37-87 6-43 (227)
149 KOG2068 MOT2 transcription fac 30.8 20 0.00044 40.1 0.7 30 62-91 1-32 (327)
150 cd00730 rubredoxin Rubredoxin; 30.2 15 0.00032 30.6 -0.3 7 80-86 36-42 (50)
151 KOG3736 Polypeptide N-acetylga 29.9 69 0.0015 38.7 4.8 48 357-407 139-186 (578)
152 TIGR03830 CxxCG_CxxCG_HTH puta 29.7 21 0.00046 33.1 0.5 40 39-88 1-41 (127)
153 PF13240 zinc_ribbon_2: zinc-r 29.5 14 0.00031 26.1 -0.5 13 75-87 10-22 (23)
154 PF01580 FtsK_SpoIIIE: FtsK/Sp 29.3 2.3E+02 0.005 28.4 7.9 74 376-479 51-124 (205)
155 TIGR01206 lysW lysine biosynth 29.2 38 0.00083 28.8 1.9 13 38-50 4-16 (54)
156 COG1198 PriA Primosomal protei 29.0 25 0.00053 43.4 1.0 52 46-97 425-481 (730)
157 PF08274 PhnA_Zn_Ribbon: PhnA 28.8 24 0.00051 26.8 0.5 24 38-63 4-27 (30)
158 PRK14873 primosome assembly pr 28.5 40 0.00087 41.1 2.7 11 78-88 422-432 (665)
159 PTZ00293 thymidine kinase; Pro 28.2 28 0.0006 36.8 1.1 35 37-71 138-177 (211)
160 COG2888 Predicted Zn-ribbon RN 28.1 54 0.0012 28.7 2.6 48 36-85 9-57 (61)
161 PF09526 DUF2387: Probable met 27.9 40 0.00087 30.1 1.9 31 34-64 6-39 (71)
162 KOG2824 Glutaredoxin-related p 27.4 36 0.00078 37.5 1.8 22 33-62 226-247 (281)
163 PF13248 zf-ribbon_3: zinc-rib 27.2 17 0.00037 26.1 -0.4 15 73-87 11-25 (26)
164 PF00643 zf-B_box: B-box zinc 26.7 43 0.00093 25.7 1.7 31 36-73 3-33 (42)
165 PRK03681 hypA hydrogenase nick 26.6 22 0.00048 33.9 0.1 27 56-89 71-98 (114)
166 COG2191 Formylmethanofuran deh 26.0 34 0.00073 36.2 1.3 26 36-71 172-201 (206)
167 PF07754 DUF1610: Domain of un 26.0 53 0.0011 23.9 1.9 24 39-63 1-24 (24)
168 COG4391 Uncharacterized protei 25.7 27 0.00058 30.7 0.4 17 74-90 44-60 (62)
169 TIGR00100 hypA hydrogenase nic 25.6 27 0.00058 33.3 0.4 19 72-90 80-98 (115)
170 PF03142 Chitin_synth_2: Chiti 25.5 1.2E+02 0.0025 36.4 5.6 44 358-404 23-66 (527)
171 PF04641 Rtf2: Rtf2 RING-finge 25.3 60 0.0013 34.8 3.0 50 35-90 112-162 (260)
172 TIGR00595 priA primosomal prot 25.0 34 0.00073 40.2 1.2 44 38-93 215-268 (505)
173 PRK09382 ispDF bifunctional 2- 24.9 1.3E+02 0.0029 34.2 5.8 56 547-606 85-159 (378)
174 KOG3507 DNA-directed RNA polym 24.8 33 0.00071 30.0 0.8 28 36-65 20-47 (62)
175 PRK08359 transcription factor; 24.7 25 0.00054 36.3 0.0 30 37-74 7-42 (176)
176 KOG2177 Predicted E3 ubiquitin 24.6 39 0.00085 33.7 1.4 44 35-86 12-55 (386)
177 PF12773 DZR: Double zinc ribb 24.4 49 0.0011 26.4 1.7 12 36-47 12-23 (50)
178 PF03107 C1_2: C1 domain; Int 24.0 51 0.0011 24.4 1.5 28 38-69 2-29 (30)
179 PRK06319 DNA topoisomerase I/S 24.0 44 0.00095 41.9 1.9 56 35-93 591-660 (860)
180 cd03031 GRX_GRX_like Glutaredo 23.9 36 0.00077 34.0 0.9 43 35-86 98-141 (147)
181 TIGR00155 pqiA_fam integral me 23.7 55 0.0012 37.6 2.5 35 54-92 12-47 (403)
182 TIGR02556 cas_TM1802 CRISPR-as 23.1 51 0.0011 39.5 2.1 41 36-77 170-222 (555)
183 COG4707 Uncharacterized protei 23.1 33 0.00071 32.6 0.5 43 464-517 20-69 (107)
184 smart00744 RINGv The RING-vari 22.8 1.1E+02 0.0023 25.2 3.3 45 38-85 1-49 (49)
185 KOG2792 Putative cytochrome C 22.7 87 0.0019 34.6 3.6 41 342-383 158-198 (280)
186 PRK03824 hypA hydrogenase nick 22.6 26 0.00057 34.3 -0.3 15 77-91 106-121 (135)
187 PF13719 zinc_ribbon_5: zinc-r 22.5 36 0.00079 26.4 0.6 11 80-90 4-14 (37)
188 cd00065 FYVE FYVE domain; Zinc 22.4 39 0.00084 27.4 0.7 37 36-75 2-38 (57)
189 COG0551 TopA Zn-finger domain 22.3 37 0.00079 32.9 0.7 52 34-89 58-112 (140)
190 PF10571 UPF0547: Uncharacteri 22.2 35 0.00076 25.0 0.4 17 73-89 9-25 (26)
191 PRK14714 DNA polymerase II lar 22.1 44 0.00096 43.4 1.5 48 37-91 668-722 (1337)
192 KOG2857 Predicted MYND Zn-fing 21.5 48 0.001 33.5 1.3 44 36-91 5-49 (157)
193 PRK06393 rpoE DNA-directed RNA 21.2 44 0.00095 29.5 0.8 23 54-87 4-26 (64)
194 PF13717 zinc_ribbon_4: zinc-r 20.9 41 0.00089 26.0 0.6 11 80-90 4-14 (36)
195 TIGR02302 aProt_lowcomp conser 20.5 1.8E+02 0.0039 36.8 6.1 43 561-606 271-313 (851)
196 cd02340 ZZ_NBR1_like Zinc fing 20.4 78 0.0017 25.4 2.1 29 38-71 2-31 (43)
197 KOG0320 Predicted E3 ubiquitin 20.3 80 0.0017 33.1 2.6 45 37-87 132-176 (187)
No 1
>PLN02436 cellulose synthase A
Probab=100.00 E-value=5.3e-254 Score=2172.26 Aligned_cols=785 Identities=86% Similarity=1.422 Sum_probs=719.5
Q ss_pred CCCCCcccccccCCceEEEeccccccccccccccCCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCC
Q 003854 1 MATGGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (791)
Q Consensus 1 m~~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~ 80 (791)
||+++|||||||||||||+|++|++.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 m~~~~~~~~gs~~r~e~~~~~~d~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~ 80 (1094)
T PLN02436 1 MNTGGRLIAGSHNRNEFVLINADEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1094)
T ss_pred CCcccccccccccccceeEeccccccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence 99999999999999999999999766678999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCcCCCCCccccccccccccCCCCCCCCCcchhhhHHhhhhccCCCCCC----CcC--CCCCCCCC
Q 003854 81 CPQCKTRYKRLKGSPRVEGDEEEDDIDDLDHEFDYGNLDGFGPQHVSDAALSARLNASGIPTR----SEL--DSAPLSSN 154 (791)
Q Consensus 81 CPqCKt~Ykr~kGsprv~gd~ee~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~ 154 (791)
|||||||||||||||||+|||||+++||+||||++. .++.+.++++|+|++++|++|++.+- +.. +..+..++
T Consensus 81 Cpqckt~Y~r~kgs~~~~~d~ee~~~dd~e~ef~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1094)
T PLN02436 81 CPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDYG-NNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQ 159 (1094)
T ss_pred CcccCCchhhccCCCCcCCccccccchhhhhhhcCc-ccccchHHHHHHHhhhhcccCccccccccccccccccCCCcCC
Confidence 999999999999999999999999999999999986 22224577899999999999988661 101 11011346
Q ss_pred CCccccCC--CCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhh
Q 003854 155 IPLLTYGE--EDDDISSDRHALIVPPYMGHGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNE 232 (791)
Q Consensus 155 ~~~~~~~~--~~~~~~~~~h~~~~~~~~g~g~~~~~~~~~~~~~p~~~r~~~~~k~~~~yg~g~~~w~~~~~~wk~~~~~ 232 (791)
+|+|++++ +|++ +++|++++|+.+|.||||||+||+++++++++|.|||+||+++||||||+||||||+||+||++
T Consensus 160 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~~ 237 (1094)
T PLN02436 160 IPLLTYGEEDVEIS--SDRHALIVPPSTGHGNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNE 237 (1094)
T ss_pred CcccccCcccCccC--CcccccccCCcccccccccccccccccccCCCccCCccccccccccCcHHHHHHHHHHHhhhhh
Confidence 79999876 5555 6778887888888899999999999999999999999999999999999999999999999985
Q ss_pred hhhhcccCCCCCCCCCCCCCCCCCCCcccccCCCCceeeeecCCCCCChhHHHHHHHHHHHHHHHHhhhcccCCchhHHH
Q 003854 233 KLQVVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALW 312 (791)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~liv~~li~l~~yl~wRi~~~~~~a~~lW 312 (791)
|++++.+..+...++++|++.+++|++++|++++||+||+++++++|+|||++++++|++|++||+|||+|++.+++|+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~W 317 (1094)
T PLN02436 238 KLQVVKHEGGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLW 317 (1094)
T ss_pred cccccccccccccCCCCCCCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHH
Confidence 55555543111001222223346788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhcCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCC
Q 003854 313 LTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYP 392 (791)
Q Consensus 313 l~~~i~Ei~fa~swlL~q~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP 392 (791)
+++++||+||+|+|+|+|++||+||+|.||++||++|+++++++++||+|||||||+||.+|||++|+|||||+||+|||
T Consensus 318 l~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP 397 (1094)
T PLN02436 318 LTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYP 397 (1094)
T ss_pred HHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999988778999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHH
Q 003854 393 VDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKI 472 (791)
Q Consensus 393 ~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~ 472 (791)
++||+|||||||+|+||||||+|||+|||+||||||||+|||||||+||+++.++++++++++|++|||+|||||||||+
T Consensus 398 ~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~ 477 (1094)
T PLN02436 398 VDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKV 477 (1094)
T ss_pred ccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHH
Q 003854 473 RINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNAL 552 (791)
Q Consensus 473 rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~l 552 (791)
|||+|+++++++|+++|.|+|||+|||++++|||+|||||++++++.|.+|++||+||||||||||||+||+||||||+|
T Consensus 478 RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaL 557 (1094)
T PLN02436 478 KINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSL 557 (1094)
T ss_pred HHHHHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhhh
Confidence 99999988899999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred HHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCccccchhhhhhhhccccccC
Q 003854 553 VRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGI 632 (791)
Q Consensus 553 LrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n~n~vFfdii~~grDG~ 632 (791)
|||||+|||||||||||||||||||+++|+||||||||+.|+++|||||||+|+|++++|+|+|+++|||+++++|+||+
T Consensus 558 lRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDGl 637 (1094)
T PLN02436 558 IRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGI 637 (1094)
T ss_pred hhhheeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeeccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccchhhhhhhhcCCCCCCCCCCCCCCCCCCCCCccccCCCCCcccccCCcchhhhcchhhhhhhhhhhhhhhhc
Q 003854 633 QGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEE 712 (791)
Q Consensus 633 qgp~y~GTGcv~RR~AL~G~~Pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (791)
|||+|+||||+|||+||||++||...+.+...++||++||||||++++++++...+..+ ..++.+...++++++++++
T Consensus 638 qGP~YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 715 (1094)
T PLN02436 638 QGPIYVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKK--KKKNREASKQIHALENIEE 715 (1094)
T ss_pred CCccccccCceeeeeeeeccCCccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccc
Confidence 99999999999999999999999877766778899999999999988775432211111 1234455668889999999
Q ss_pred cccccccCCCcccchhHHHhhcCCChhhhhhcccccCCCCCCCChhhHHHHHHHcccccCCCCCcCCCceeEEecccc
Q 003854 713 GVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVSWLDIWFC 790 (791)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGWiYg~~~ 790 (791)
+.++++++++..++++.++++||+|++||+|+++++++++.+.+++++|+||++||||+||++|+||+|||||||++.
T Consensus 716 ~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvT 793 (1094)
T PLN02436 716 GIEGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVT 793 (1094)
T ss_pred ccccccchhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeecccee
Confidence 999999999989999999999999999999999988888888889999999999999999999999999999999864
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=4.1e-252 Score=2162.88 Aligned_cols=772 Identities=62% Similarity=1.108 Sum_probs=692.5
Q ss_pred CCCCCcccccccCCceEEEeccccccccccccccCCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCC
Q 003854 1 MATGGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (791)
Q Consensus 1 m~~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~ 80 (791)
||+++|||||||||||||+|+.|++.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 ~~~~~glvaGSh~Rnelv~i~~d~~~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~ 80 (1085)
T PLN02400 1 MEANAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQC 80 (1085)
T ss_pred CCCccccccccccccceeeecccccccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCcc
Confidence 99999999999999999999999777779999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCcCCCCCccccccccccccCCCCCCCCCcchhhhHHhhhhccCCCCCCCcCCCC--CCCCCCCcc
Q 003854 81 CPQCKTRYKRLKGSPRVEGDEEEDDIDDLDHEFDYGNLDGFGPQHVSDAALSARLNASGIPTRSELDSA--PLSSNIPLL 158 (791)
Q Consensus 81 CPqCKt~Ykr~kGsprv~gd~ee~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 158 (791)
|||||||||||||||||+|||||||+||+||||++.+.++...++++ |++.+ ...+ .+.+++|+|
T Consensus 81 CPQCkTrYkR~KgsprV~GDeeedd~DDlenEf~~~~~~~~~~~~~~----------~~~~~---~~~~~~~~~~~~p~l 147 (1085)
T PLN02400 81 CPQCKTRYRRHKGSPRVEGDEDEDDVDDLENEFNYAQGNGKARHQWQ----------GEDIE---LSSSSRHESQPIPLL 147 (1085)
T ss_pred CcccCCccccccCCCCCCcccccccchhhhhhhcccccccccccccc----------ccCcc---ccCcccccCCCCccc
Confidence 99999999999999999999999999999999998522211112221 34332 1111 012578999
Q ss_pred ccCC---CCCCCCccccccccCCCC---CCCCccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhh
Q 003854 159 TYGE---EDDDISSDRHALIVPPYM---GHGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNE 232 (791)
Q Consensus 159 ~~~~---~~~~~~~~~h~~~~~~~~---g~g~~~~~~~~~~~~~p~~~r~~~~~k~~~~yg~g~~~w~~~~~~wk~~~~~ 232 (791)
+++| +|+++++++|++++++.+ |.||||||+||+|+.+|+++|.|||+||+++||||||+||||||+||+||+|
T Consensus 148 t~g~~~s~ei~~~~~~~~~~~~~~~~~~~~~~~vh~~p~~d~~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~k 227 (1085)
T PLN02400 148 THGQPVSGEIPCATPDNQSVRTTSGPLGPAERNANSSPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDK 227 (1085)
T ss_pred cCCcccCCCCCCCCCccccccCCcccccccCCcccccCccCcccCCCccccCccccccccccCcHHHHHHHHHHHhhhhh
Confidence 9976 889887767666666553 4479999999999999999999999999999999999999999999999976
Q ss_pred hhhhcccCCCCCC-CCCCCCCCCCCCCcccccCCCCceeeeecCCCCCChhHHHHHHHHHHHHHHHHhhhcccCCchhHH
Q 003854 233 KLQVVKHEGGSDS-RNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYAL 311 (791)
Q Consensus 233 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~liv~~li~l~~yl~wRi~~~~~~a~~l 311 (791)
++.++.+....+. ++++|.+.+++|+++||++++||+||+++++++|+|||++++++|++|++||+|||+|++.+++|+
T Consensus 228 ~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~ 307 (1085)
T PLN02400 228 NMMQMTNKYHEGKGGDMEGTGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGL 307 (1085)
T ss_pred hccccccccccccccCCCCCCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHH
Confidence 6554443221100 022222334678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhcCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCC
Q 003854 312 WLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDY 391 (791)
Q Consensus 312 Wl~~~i~Ei~fa~swlL~q~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDY 391 (791)
|+++|+||+||+|+|+|+|++||+||+|.||++||++|+++++++++||+|||||||+||.+|||++|+|||||+||+||
T Consensus 308 Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DY 387 (1085)
T PLN02400 308 WLTSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDY 387 (1085)
T ss_pred HHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999998877889999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHH
Q 003854 392 PVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFK 471 (791)
Q Consensus 392 P~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k 471 (791)
|++||+|||||||+|+||||||+|||+|||+||||||||+|||||||+||+++.++++++.+|+|++|||+|||||||||
T Consensus 388 P~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k 467 (1085)
T PLN02400 388 PVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFK 467 (1085)
T ss_pred cccceEEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhH
Q 003854 472 IRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNA 551 (791)
Q Consensus 472 ~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~ 551 (791)
+|||+|+++++++|+++|.|+|||+|||++++|||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+
T Consensus 468 ~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNa 547 (1085)
T PLN02400 468 VRINALVAKAQKIPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNA 547 (1085)
T ss_pred HHHHHHHhhhccCCccccccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhhHH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCccccchhhhhhhhcccccc
Q 003854 552 LVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDG 631 (791)
Q Consensus 552 lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n~n~vFfdii~~grDG 631 (791)
||||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|+|+|++++||+++++|+||
T Consensus 548 LlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~GldG 627 (1085)
T PLN02400 548 LIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDG 627 (1085)
T ss_pred HHHHhhhhcCCceEEecccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccchhhhhhhhcCCCCCCCCCCCCCCCCCCCCCccccCCCCCcccccCCc-chhhhcchhhhhhhhhhhhhhh
Q 003854 632 IQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPK-KDKKKKSKNKEASKQIHALENI 710 (791)
Q Consensus 632 ~qgp~y~GTGcv~RR~AL~G~~Pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 710 (791)
+|||+|+||||+|||+||||++||..+......+. ||+||++++++++.+.. ...++..+..+.+.++++++++
T Consensus 628 lqGP~YvGTGC~frR~aLYG~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1085)
T PLN02400 628 IQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNII-----VKSCCGSRKKGKGSKKYNIDKKRAMKRTESNVPIFNMEDI 702 (1085)
T ss_pred CCCccccccCcceeeeeeccCCCcccccccccccc-----cccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999875442121111 24466666554322111 1122233445567789999999
Q ss_pred hccccccccCCCcccchhHHHhhcCCChhhhhhcccccCCCCCCCChhhHHHHHHHcccccCCCCCcCCCceeEEecccc
Q 003854 711 EEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVSWLDIWFC 790 (791)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGWiYg~~~ 790 (791)
+++.+++++++++.+++++|+++||+|++||+|+++++++++++++++++|+||++||||+||++|+||+|||||||++.
T Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiYGSvT 782 (1085)
T PLN02400 703 EEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVT 782 (1085)
T ss_pred ccccccccchhhhhhhhhhhhhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCeecccee
Confidence 99999999988888999999999999999999999988988888899999999999999999999999999999999964
No 3
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=2.9e-239 Score=2054.53 Aligned_cols=756 Identities=63% Similarity=1.096 Sum_probs=668.3
Q ss_pred ccccccccccccCCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCcCCCCC
Q 003854 23 DETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEE 102 (791)
Q Consensus 23 ~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~kGsprv~gd~e 102 (791)
|++.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||||
T Consensus 4 ~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gDee 83 (1079)
T PLN02638 4 EGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGDEE 83 (1079)
T ss_pred CCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCcccc
Confidence 56666789999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc-cccccccccCCCCCCCCCcchhhhHHhhhhccCCCCC-C---CcCCCCCCCCCCCccccCC---CCCCCCcccccc
Q 003854 103 EDD-IDDLDHEFDYGNLDGFGPQHVSDAALSARLNASGIPT-R---SELDSAPLSSNIPLLTYGE---EDDDISSDRHAL 174 (791)
Q Consensus 103 e~~-~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~ 174 (791)
||+ +||+||||++.+.++...++++|+|+|++|+||++.| . ++.+.+ ++++|+|+++| +|+++++++|++
T Consensus 84 ed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~ 161 (1079)
T PLN02638 84 EDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVS--HNHIPLLTNGQSVSGELSAASPERLS 161 (1079)
T ss_pred ccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCC--CCCCcccccCccccCccCCCCCcccc
Confidence 887 8999999998532222347789999999999999876 1 111211 25789999876 788876555544
Q ss_pred ccCCCCCCCCccccCCCCCCC-CCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhhhhhhcccCC----CCCCCCCC
Q 003854 175 IVPPYMGHGNRVHPMPFADPS-TPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEKLQVVKHEG----GSDSRNFD 249 (791)
Q Consensus 175 ~~~~~~g~g~~~~~~~~~~~~-~p~~~r~~~~~k~~~~yg~g~~~w~~~~~~wk~~~~~~~~~~~~~~----~~~~~~~~ 249 (791)
++++.+ .|||| ||+|+. +|+++|+|||+||+++|||||++||+|||+||.||+|++.++.+.. +.+.++++
T Consensus 162 ~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~ 237 (1079)
T PLN02638 162 MASPGA-GGKRI---PYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDID 237 (1079)
T ss_pred ccCccc-cCCcc---cccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCC
Confidence 555543 57998 888865 7899999999999999999999999999999999976654333321 00001122
Q ss_pred CC-CCCCCCCcccccCCCCceeeeecCCCCCChhHHHHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHH
Q 003854 250 GG-ELDDSDLPMMDEGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWLTSVICEIWFGVSWIL 328 (791)
Q Consensus 250 ~~-~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~liv~~li~l~~yl~wRi~~~~~~a~~lWl~~~i~Ei~fa~swlL 328 (791)
++ +.+++|+++|+++++||+||+++++++|+|||++++++|++|++||+|||+|++.+++|+|+++++||+||+|+|+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll 317 (1079)
T PLN02638 238 ASTDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWIL 317 (1079)
T ss_pred CccccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHH
Confidence 11 22357889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccchhhhhhhhhhhcCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchh
Q 003854 329 DQFPKWYPITRETYLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAML 408 (791)
Q Consensus 329 ~q~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~l 408 (791)
+|++||+||+|.||++||++|+++++++++||+|||||||+||.+|||++|+|||||+||+|||++||+|||||||||+|
T Consensus 318 ~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~L 397 (1079)
T PLN02638 318 DQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML 397 (1079)
T ss_pred hccccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHH
Confidence 99999999999999999999999887788999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhHHHHHhhcCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccC
Q 003854 409 TFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEG 488 (791)
Q Consensus 409 Tf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~ 488 (791)
|||||+|||+|||+||||||||+|||||||+||+++.++++++.+++|++|||+|||||||||+|||+|+++++++|+++
T Consensus 398 Tf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~ 477 (1079)
T PLN02638 398 TFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEG 477 (1079)
T ss_pred HHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcCCCccceeeeccCCCCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEe
Q 003854 489 WTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNV 568 (791)
Q Consensus 489 w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnl 568 (791)
|.|+||++|||++++|||+||||+++++++.|.+|++||+||||||||||||+||+||||||+||||||+||||||||||
T Consensus 478 ~~m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNL 557 (1079)
T PLN02638 478 WIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNL 557 (1079)
T ss_pred ccccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeec
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCccccchhhhhhhhccccccCCCccccccchhhhhhh
Q 003854 569 DCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQA 648 (791)
Q Consensus 569 DcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~A 648 (791)
|||||+|||++||+||||||||+.|+++|||||||+|||++++|+|+|++++||+++|+|+||+|||+||||||+|||+|
T Consensus 558 DCDmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~A 637 (1079)
T PLN02638 558 DCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTA 637 (1079)
T ss_pred ccCcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcceeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCccccCCCCCcc-cccCCcch-hhhcchhhhhhhhhhhhhhhhccccc--cccCCCcc
Q 003854 649 LYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNK-KAKQPKKD-KKKKSKNKEASKQIHALENIEEGVEE--TNAEKPSD 724 (791)
Q Consensus 649 L~G~~Pp~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 724 (791)
|||++||...+.... ..+++||++.++. ++.+.+.. +++..++.+.+.+++++++++++.++ ++++++.+
T Consensus 638 LYG~~p~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1079)
T PLN02638 638 LYGYEPPIKPKHKKP------GFLSSLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLL 711 (1079)
T ss_pred hcCcCCccccccccc------ccccccccccccccccccchhhccccccccccccccccccccccccccccccchhhhhh
Confidence 999999975432111 1122455553332 22111100 11122334455677888887777665 55577778
Q ss_pred cchhHHHhhcCCChhhhhhcccccCCCCCCCChhhHHHHHHHcccccCCCCCcCCCceeEEecccc
Q 003854 725 MSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVSWLDIWFC 790 (791)
Q Consensus 725 ~~~~~~~~~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGWiYg~~~ 790 (791)
+++..++++||+|++||+|+++++++.++..+++++|+||++||||+||++|+||+|||||||++.
T Consensus 712 ~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvT 777 (1079)
T PLN02638 712 MSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVT 777 (1079)
T ss_pred hhhhhhhhhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeeccee
Confidence 999999999999999999999999998888899999999999999999999999999999999864
No 4
>PLN02189 cellulose synthase
Probab=100.00 E-value=1.2e-231 Score=1986.03 Aligned_cols=731 Identities=64% Similarity=1.132 Sum_probs=654.2
Q ss_pred CCCCCcccccccCCceEEEeccccccccccccccCCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCC
Q 003854 1 MATGGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (791)
Q Consensus 1 m~~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~ 80 (791)
||+++|||||||||||||++++| ++ .||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 ~~~~~g~~~gs~~r~~~~~~~~~-~~-~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~ 78 (1040)
T PLN02189 1 MEASAGLVAGSHNRNELVVIHGH-EE-PKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQN 78 (1040)
T ss_pred CCcccccccccccccceeeeccc-cC-CCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence 99999999999999999999987 43 58999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCcCCCCCccccccccccccCCCCCCCCCcchhhhHHhhhhccCCCCCCCcCCCCCCCCCCCcccc
Q 003854 81 CPQCKTRYKRLKGSPRVEGDEEEDDIDDLDHEFDYGNLDGFGPQHVSDAALSARLNASGIPTRSELDSAPLSSNIPLLTY 160 (791)
Q Consensus 81 CPqCKt~Ykr~kGsprv~gd~ee~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (791)
|||||||||||||||||+||||||++||+||||++.+ ++...++++|+|++++|++|++.+ ... ..+++|++++
T Consensus 79 CpqCkt~Y~r~kgs~~v~gd~ee~~~dd~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~ 152 (1040)
T PLN02189 79 CPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDD-EQDKNKHITEAMLHGKMSYGRGPD---DDE--NNQFPPVITG 152 (1040)
T ss_pred CcccCCchhhccCCCCcCCccccccchhhhhhccccc-cccchhHHHHHHhhhhcccCCCcc---cCC--CcCCCccccc
Confidence 9999999999999999999999999999999999862 222357889999999999998875 111 1356789998
Q ss_pred CC-----CCCCCCc--cccccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhhh
Q 003854 161 GE-----EDDDISS--DRHALIVPPYMGHGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEK 233 (791)
Q Consensus 161 ~~-----~~~~~~~--~~h~~~~~~~~g~g~~~~~~~~~~~~~p~~~r~~~~~k~~~~yg~g~~~w~~~~~~wk~~~~~~ 233 (791)
++ +|++..+ .+|++++++. .||+|||+||++. ++|+|||+||++ ||||||+||+||+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~--------wk~rv~~wk~~~~-- 216 (1040)
T PLN02189 153 VRSRPVSGEFPIGSGYGHGEQMLSSS--LHKRVHPYPVSEP----GSAKWDEKKEGG--------WKERMDDWKMQQG-- 216 (1040)
T ss_pred CccccccCCcCccccccccccccCCc--ccCccCcccccCC----CcccCCcccccc--------HHHHHHHHHhhcc--
Confidence 65 5555211 1343445554 5799999999884 468999999975 9999999999995
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCcccccCCCCceeeeecCCCCCChhHHHHHHHHHHHHHHHHhhhcccCCchhHHHH
Q 003854 234 LQVVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWL 313 (791)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~liv~~li~l~~yl~wRi~~~~~~a~~lWl 313 (791)
..+++ ++.+++|.++++++++||+||+++++++++|||++++++|++|++||+||++|++.+++|+|+
T Consensus 217 -----~~~~~-------~~~~~~d~~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~ 284 (1040)
T PLN02189 217 -----NLGPD-------PDDYDADMALIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWL 284 (1040)
T ss_pred -----cCCCC-------CCCCchhhhhcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHH
Confidence 11111 223356777889999999999999999999999999999999999999999999989999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhcCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCC
Q 003854 314 TSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPV 393 (791)
Q Consensus 314 ~~~i~Ei~fa~swlL~q~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~ 393 (791)
++++||+||+|+|+|+|++||+||+|.||++||++|+++++++++||+|||||||+||.+|||++|+|||||+||+|||+
T Consensus 285 ~s~~~E~wFaf~Wll~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~ 364 (1040)
T PLN02189 285 TSIICEIWFAVSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPV 364 (1040)
T ss_pred HHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999877788999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHH
Q 003854 394 DKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIR 473 (791)
Q Consensus 394 ~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~r 473 (791)
+||+|||||||||+||||||+|||+|||+||||||||+|||||||+||+++.++++++.+++|++||++|||||||||+|
T Consensus 365 eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvR 444 (1040)
T PLN02189 365 DKISCYVSDDGASMLTFEALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVR 444 (1040)
T ss_pred cceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHH
Q 003854 474 INALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALV 553 (791)
Q Consensus 474 I~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lL 553 (791)
||.|+++++++|+++|.|+||++|||++++|||+||||+++++++.|.+|++||+||||||||||||+||+||||||+||
T Consensus 445 I~~l~a~~~~~p~~~~~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLl 524 (1040)
T PLN02189 445 INAIVAKAQKVPPEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALI 524 (1040)
T ss_pred HHHHHhhcCccCCccceeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred HHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCccccchhhhhhhhccccccCC
Q 003854 554 RVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQ 633 (791)
Q Consensus 554 rvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n~n~vFfdii~~grDG~q 633 (791)
||||+|||||||||||||||+|||++||+||||||||+.|+++|||||||+|+|++++|+|+|++++||+++|+|+||+|
T Consensus 525 RVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlq 604 (1040)
T PLN02189 525 RVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQ 604 (1040)
T ss_pred HHhhhccCCCeEEEccCccccCchHHHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeeecccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccchhhhhhhhcCCCCCCCCCCCCCCCCCCCCCccccCCCCCcccccCCcchhhhcchhhhhhhhhhhhhhhhcc
Q 003854 634 GPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEG 713 (791)
Q Consensus 634 gp~y~GTGcv~RR~AL~G~~Pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (791)
||+||||||+|||+||||++||+..+.+..+|+ +|+||.+++++++.+.. .. + ..++
T Consensus 605 GP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-----------~~-~------~~~~ 661 (1040)
T PLN02189 605 GPVYVGTGCVFRRQALYGYDPPKGPKRPKMVTC-----DCCPCFGRRKKKHAKNG-----------LN-G------EVAA 661 (1040)
T ss_pred CccccccCceeeeeeeeccCccccccccccccc-----chhhhcccccccccccc-----------cc-c------cccc
Confidence 999999999999999999999876555444431 23344444332111100 00 0 0112
Q ss_pred ccccccCCCcccchhHHHhhcCCChhhhhhcccccCCCCCCCChhhHHHHHHHcccccCCCCCcCCCceeEEecccc
Q 003854 714 VEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVSWLDIWFC 790 (791)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGWiYg~~~ 790 (791)
.++++.++...+++++++++||+|++||+|+..+.++.++.++++++++||++|+||+||++|+||+||||+||++.
T Consensus 662 ~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvT 738 (1040)
T PLN02189 662 LGGMESDKEMLMSQMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSIT 738 (1040)
T ss_pred ccccchhhhhhhhhhhhHhhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCeeccccc
Confidence 23344455567788999999999999999999888888888889999999999999999999999999999999974
No 5
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=1e-230 Score=1978.71 Aligned_cols=707 Identities=65% Similarity=1.189 Sum_probs=638.7
Q ss_pred ccccCCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCcCCC-CCccccccc
Q 003854 31 VKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGD-EEEDDIDDL 109 (791)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~kGsprv~gd-~ee~~~dd~ 109 (791)
-+..++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||+++||+
T Consensus 10 ~~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd~ 89 (1044)
T PLN02915 10 RQSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDDF 89 (1044)
T ss_pred ccCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchhh
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999 567888999
Q ss_pred cccccCCCCCCCCCcchhhhHHhhhhccCCCCCCCcCCCCCCCCCCCccccCCCCCCCCccccccccCCCCCCCCccccC
Q 003854 110 DHEFDYGNLDGFGPQHVSDAALSARLNASGIPTRSELDSAPLSSNIPLLTYGEEDDDISSDRHALIVPPYMGHGNRVHPM 189 (791)
Q Consensus 110 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~g~g~~~~~~ 189 (791)
||||++...+ . .+.|++++|++|++.+ ...+.+.+++|++++ +++++
T Consensus 90 ~~~~~~~~~~---~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~----------------------- 136 (1044)
T PLN02915 90 EDEFQIKSPQ---D---HEPVHQNVFAGSENGD---YNAQQWRPGGPAFSS-TGSVA----------------------- 136 (1044)
T ss_pred hhhhcccccc---c---cchhhhhhccCCCCcc---ccccccCCCCccccC-CCCcC-----------------------
Confidence 9999985211 1 1238899999988765 111111244555554 22221
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCCCCcccccCCCCce
Q 003854 190 PFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEKLQVVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLS 269 (791)
Q Consensus 190 ~~~~~~~p~~~r~~~~~k~~~~yg~g~~~w~~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~ 269 (791)
-+.|+|+|| ||||++||||||+||+||+ |++++.+..++ ++ +..+++|+++|+++++||+
T Consensus 137 ----------~~~~~~~~~----~~g~~~wk~r~~~wk~~~~-~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~pL~ 196 (1044)
T PLN02915 137 ----------GKDLEAERE----GYGNAEWKDRVDKWKTRQE-KRGLVNKDDSD----DG-DDKGDEEEYLLAEARQPLW 196 (1044)
T ss_pred ----------CCCcCcccc----CcCCHHHHHHHHHHHhhhh-hhccccccccC----CC-CCCCCcccccccccCCCce
Confidence 135899997 8999999999999999996 55555543221 11 1223678889999999999
Q ss_pred eeeecCCCCCChhHHHHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhh
Q 003854 270 RKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLR 349 (791)
Q Consensus 270 rk~~i~~~~~~~yR~liv~~li~l~~yl~wRi~~~~~~a~~lWl~~~i~Ei~fa~swlL~q~~kw~Pv~R~t~~drL~~r 349 (791)
||+++++++|+|||++++++|++|++||+|||+|++.+++|+|+++++||+||+|+|||+|++||+||+|.||++||++|
T Consensus 197 ~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r 276 (1044)
T PLN02915 197 RKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYLDRLSMR 276 (1044)
T ss_pred EEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHh
Q 003854 350 YEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKK 429 (791)
Q Consensus 350 ~e~~~~~~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK 429 (791)
|++++++++||+|||||||+||.+|||++|+|||||+||+|||++||+|||||||||+||||||+|||+|||+|||||||
T Consensus 277 ~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK 356 (1044)
T PLN02915 277 FERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKK 356 (1044)
T ss_pred hccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhhcchhhh
Confidence 99887788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccce
Q 003854 430 FNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMI 509 (791)
Q Consensus 430 ~~IepRaPe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~ii 509 (791)
|+|||||||+||+++.++++++++++|++|||+|||||||||+|||+|+++++++|+++|.|+|||+|||++.+|||+||
T Consensus 357 ~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~II 436 (1044)
T PLN02915 357 HNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMI 436 (1044)
T ss_pred cCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhccccc
Q 003854 510 QVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD 589 (791)
Q Consensus 510 qV~~~~~g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflD 589 (791)
|||++++++.|.+|++||+||||||||||||+||+||||||+||||||+|||||||||||||||+|||+++|+|||||||
T Consensus 437 qVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD 516 (1044)
T PLN02915 437 QVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMD 516 (1044)
T ss_pred EEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeeec
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEecCccccCCCCCCccccchhhhhhhhccccccCCCccccccchhhhhhhhcCCCCCCCCCCCCCCCCCCC
Q 003854 590 PQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWP 669 (791)
Q Consensus 590 p~~g~~vafVQtPQ~F~Nid~~D~~~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL~G~~Pp~~~~~~~~~~~~~~ 669 (791)
|+.|+++|||||||+|+|+|++|+|+|+++|||+++++|+||+|||+|+||||+|||+||||++||..++.++.+|+||+
T Consensus 517 ~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG~~pp~~~~~~~~~~~~~~ 596 (1044)
T PLN02915 517 PQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWP 596 (1044)
T ss_pred CCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecCcCCccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988878888999999
Q ss_pred CCccccCCCCCcccccCCcch-----------hhh------------cchhhhhhhhhhhhhhhhcccccccc-CCCccc
Q 003854 670 KWCCLCCGSRKNKKAKQPKKD-----------KKK------------KSKNKEASKQIHALENIEEGVEETNA-EKPSDM 725 (791)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~-----------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 725 (791)
.||||||++++|+++...++. +++ .....+++.+++++++|++++|++++ ++++.+
T Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1044)
T PLN02915 597 SWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEGYDELEKSSLM 676 (1044)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence 999988887776433211100 000 00123345578899999999999877 777889
Q ss_pred chhHHHhhcCCChhhhhhcccccCCCCCCCChhhHHHHHHHcccccCCCCCcCCCceeEEecccc
Q 003854 726 SRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVSWLDIWFC 790 (791)
Q Consensus 726 ~~~~~~~~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGWiYg~~~ 790 (791)
+++.++++||+|++||+|+++++++.+.+++++++|+||++||||+||++|+||+||||+||++.
T Consensus 677 ~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvT 741 (1044)
T PLN02915 677 SQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVT 741 (1044)
T ss_pred hhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCccccccc
Confidence 99999999999999999999998888888899999999999999999999999999999999864
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=5.5e-212 Score=1814.45 Aligned_cols=671 Identities=60% Similarity=1.110 Sum_probs=585.8
Q ss_pred ccCCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCcCCCCCcccccccccc
Q 003854 33 ELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLDHE 112 (791)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~kGsprv~gd~ee~~~dd~~~e 112 (791)
++++|+||||||+||+++|||+|||||||+|||||||||||||||||+||||||||| ||+++||+|||
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk------------~~~~~~d~~~~ 70 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD------------AENVFDDVETK 70 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc------------cccccchhhhh
Confidence 568999999999999999999999999999999999999999999999999999998 46778999999
Q ss_pred ccCCCCCCCCCcchhhhHHhhhhccCCCCCCCcCCCCCCCCCCCccccCCCCCCCCccccccccCCCCCCCCccccCCCC
Q 003854 113 FDYGNLDGFGPQHVSDAALSARLNASGIPTRSELDSAPLSSNIPLLTYGEEDDDISSDRHALIVPPYMGHGNRVHPMPFA 192 (791)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~g~g~~~~~~~~~ 192 (791)
|+.+ .+++ .++|++|++.+ . +.+++|++++.+
T Consensus 71 ~~~~------~~~~-----~~~~~~~~~~~-----~--~~~~~~~~~~~~------------------------------ 102 (977)
T PLN02195 71 HSRN------QSTM-----ASHLNDTQDVG-----I--HARHISSVSTVD------------------------------ 102 (977)
T ss_pred hccc------hhhh-----hhhcccCcCCC-----C--CCccccccccCC------------------------------
Confidence 9432 2233 26677766532 1 112333333211
Q ss_pred CCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCCCCcccccCCCCceeee
Q 003854 193 DPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEKLQVVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKL 272 (791)
Q Consensus 193 ~~~~p~~~r~~~~~k~~~~yg~g~~~w~~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~rk~ 272 (791)
...| | +|||++||||||+||.||+|++..+.+.+. ..++++ ++.+++|+++ |+.++||+||+
T Consensus 103 -~~~~----------~----~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~-~~~~~pL~~~~ 164 (977)
T PLN02195 103 -SELN----------D----EYGNPIWKNRVESWKDKKNKKKKSAKKKEA-HKAQIP-PEQQMEEKPS-ADAYEPLSRVI 164 (977)
T ss_pred -Cccc----------C----ccCCHHHHHHHHHHHHhhhhhccccccccc-cccCCC-CccCCccccc-ccccCCceEEE
Confidence 1100 1 399999999999999999766554443321 001222 2334667775 99999999999
Q ss_pred ecCCCCCChhHHHHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhc
Q 003854 273 PIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEK 352 (791)
Q Consensus 273 ~i~~~~~~~yR~liv~~li~l~~yl~wRi~~~~~~a~~lWl~~~i~Ei~fa~swlL~q~~kw~Pv~R~t~~drL~~r~e~ 352 (791)
++++++|+|||++++++|++|++||+|||+|++.+++|+|+++++||+||+|+|+|+|++||+||+|.||++||++|+++
T Consensus 165 ~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~ 244 (977)
T PLN02195 165 PIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYIDRLSARYER 244 (977)
T ss_pred ecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcC
Q 003854 353 EGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNI 432 (791)
Q Consensus 353 ~~~~~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~I 432 (791)
++++++||+|||||||+||.+|||++|+|||||+||+|||++||+|||||||||+||||||+|||+|||+||||||||+|
T Consensus 245 ~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~I 324 (977)
T PLN02195 245 EGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWVPFCKKYSI 324 (977)
T ss_pred CCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCC
Confidence 87789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeee
Q 003854 433 EPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVF 512 (791)
Q Consensus 433 epRaPe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~ 512 (791)
||||||+||+++.++++++.+|+|++|||+|||||||||+|||+|+++++++|+++|.|+|||+|||++++|||+|||||
T Consensus 325 epRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~dHp~IIqVl 404 (977)
T PLN02195 325 EPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRDHPGMIQVF 404 (977)
T ss_pred CcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCCCcchhhhh
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred ccCCCCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCC
Q 003854 513 LGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQS 592 (791)
Q Consensus 513 ~~~~g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~ 592 (791)
++++++.|.+|++||+|||||||||||++||+||||||+||||||+|||||||||||||||+|||++||+|||||+||+.
T Consensus 405 l~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~~~ 484 (977)
T PLN02195 405 LGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDPVV 484 (977)
T ss_pred ccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCccc
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEecCccccCCCCCCccccchhhhhhhhccccccCCCccccccchhhhhhhhcCCCCCCCCCCCCCCCCCCCCCc
Q 003854 593 GKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWC 672 (791)
Q Consensus 593 g~~vafVQtPQ~F~Nid~~D~~~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL~G~~Pp~~~~~~~~~~~~~~~~~ 672 (791)
|+++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||++||..++.++.+|.|| |
T Consensus 485 g~~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~~---~ 561 (977)
T PLN02195 485 GRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKSSSSSS---S 561 (977)
T ss_pred CCeeEEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCccccccccccccccc---c
Confidence 9999999999999999999999999999999999999999999999999999999999999998766666665554 4
Q ss_pred cccCCCCCcccccCCcchhhhcchhhhhhhhhhhhhhhhccccccccCCCcccchhHHHhhcCCChhhhhhcccccCCCC
Q 003854 673 CLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVT 752 (791)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG~S~~fi~S~~~e~~~~~ 752 (791)
| ||+++++..... + ...+..++.+.+.++.+++++++. .+.+++..+++++++++||+|++||+|++++.++.+
T Consensus 562 ~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~ 635 (977)
T PLN02195 562 C-CCPTKKKPEQDP-S-EIYRDAKREDLNAAIFNLREIDNY---DEYERSMLISQMSFEKTFGLSSVFIESTLMENGGVP 635 (977)
T ss_pred c-cccccccccccc-h-hhcccccccccccccccccccccc---chhhhhhhhhhhHHHHhhcccHHHHHHHHHHhcCCC
Confidence 3 455444322111 0 111112233333345555554321 233666788899999999999999999999988888
Q ss_pred CCCChhhHHHHHHHcccccCCCCCcCCCceeEEecccc
Q 003854 753 GDLKRASLLKEAIQVISCGYEDKTEWGKEVSWLDIWFC 790 (791)
Q Consensus 753 ~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGWiYg~~~ 790 (791)
..++++++|+||++||||+||++|+||+||||+||++.
T Consensus 636 ~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvT 673 (977)
T PLN02195 636 ESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVT 673 (977)
T ss_pred CCCCcHHHHHHHHhhhcccCccccchhhhcCeecccee
Confidence 88889999999999999999999999999999999864
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=3.3e-187 Score=1617.91 Aligned_cols=666 Identities=48% Similarity=0.862 Sum_probs=553.3
Q ss_pred CCcccccccC---CceEEEeccccccccccccccCCccccc--ccccccccCCCCceeecCCCCCCcchhhHHHHHhhcC
Q 003854 4 GGRLIAGSHN---RNEFVLINADETARIKSVKELSGQTCQI--CEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN 78 (791)
Q Consensus 4 ~~~~~~g~~~---r~~~~~~~~~~~~~~~~~~~~~~~~C~i--Cgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~ 78 (791)
+++||||+|| |+|+|.+..|.+..|+++++..+..|.+ |+.+++.+++|+...+| ||+|.|||+||-++.+.|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 166 (1135)
T PLN02248 89 SNSIFTGGFNSVTRAHLMDKVIESEVSHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG- 166 (1135)
T ss_pred ccceecCCCCccchhhhhhcccccccCCcccCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-
Confidence 5789999999 9999999999999999999999999998 99999999999999999 999999999999999996
Q ss_pred CCCCCCccccccccCCCCcCCCCCccccccccccccCCCCCCCCCcchhhhHHhhhhccCCCCCCCcCCCCCCCCCCCcc
Q 003854 79 QACPQCKTRYKRLKGSPRVEGDEEEDDIDDLDHEFDYGNLDGFGPQHVSDAALSARLNASGIPTRSELDSAPLSSNIPLL 158 (791)
Q Consensus 79 q~CPqCKt~Ykr~kGsprv~gd~ee~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (791)
+.||+||++||.+ |+++++ .| ++. +...+ +. .. +.+.+ ...+...+...+.
T Consensus 167 ~~~~~~~~~~~~~--------~~~~~~-~~----~~~------~~~~~----~~--~~-~~~~~---~~~~~~~~~~~~~ 217 (1135)
T PLN02248 167 GICPGCKEPYKVT--------DLDDEV-PD----ESS------GALPL----PP--PG-GSKMD---RRLSLMKSNSLLM 217 (1135)
T ss_pred CCCCCCccccccc--------cccccc-cc----ccc------ccccC----CC--CC-Ccccc---cccccccccchhc
Confidence 7999999999865 332222 11 111 11111 00 00 00000 0000000000112
Q ss_pred ccCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhhhhhhcc
Q 003854 159 TYGEEDDDISSDRHALIVPPYMGHGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEKLQVVK 238 (791)
Q Consensus 159 ~~~~~~~~~~~~~h~~~~~~~~g~g~~~~~~~~~~~~~p~~~r~~~~~k~~~~yg~g~~~w~~~~~~wk~~~~~~~~~~~ 238 (791)
.++.+||+ |+ ||++++| ++|||||+.|++...
T Consensus 218 ~~~~~~~~-----~~---------------------------~w~~~~~--~~~~~~~~~~~~~~~-------------- 249 (1135)
T PLN02248 218 RSQTGDFD-----HN---------------------------RWLFETK--GTYGYGNAVWPKDDG-------------- 249 (1135)
T ss_pred cCCCCCCC-----Cc---------------------------eeeeecc--cccccccccCccccc--------------
Confidence 23447777 55 8999999 999999999998421
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccccCCCCceeeeecCCCCCChhHHHHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHH
Q 003854 239 HEGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWLTSVIC 318 (791)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~liv~~li~l~~yl~wRi~~~~~~a~~lWl~~~i~ 318 (791)
.|++. ++ .+ ...+||++|+||+||+++++++|+|||++++++|++|++||+|||+|++.+++|+|+++++|
T Consensus 250 -~~~~~------~~-~~-~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~c 320 (1135)
T PLN02248 250 -YGDDG------GG-GG-PGEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVC 320 (1135)
T ss_pred -cCCCC------Cc-cc-cccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 12210 11 11 11478999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHHhhcccccccccchhhhhhhhhhhcCC-----CCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCC
Q 003854 319 EIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEG-----KPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPV 393 (791)
Q Consensus 319 Ei~fa~swlL~q~~kw~Pv~R~t~~drL~~r~e~~~-----~~~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~ 393 (791)
|+||+|+|||+|++||+||+|.||+++|++|++.|+ ++++||+|||||||+||.+|||++|+|||||+||+|||+
T Consensus 321 E~WFaf~Wll~q~~Kw~Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~ 400 (1135)
T PLN02248 321 EIWFAFSWLLDQLPKLCPINRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPV 400 (1135)
T ss_pred HHHHHHHHHHhccccccccccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999998543 357899999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHH
Q 003854 394 DKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIR 473 (791)
Q Consensus 394 ~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~r 473 (791)
+||+|||||||||+||||||+|||+||++||||||||+|||||||+||+++.++++++.+++|++|||+|||||||||+|
T Consensus 401 eKLacYvSDDGgS~LTf~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~R 480 (1135)
T PLN02248 401 EKLACYLSDDGGALLTFEAMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVR 480 (1135)
T ss_pred cceeEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh------------------------------hccCCccCccccCCCCCCCCC--------cCCCccceeeeccC
Q 003854 474 INALVAT------------------------------AQKVPEEGWTMQDGTPWPGNN--------VRDHPGMIQVFLGQ 515 (791)
Q Consensus 474 I~~L~~k------------------------------~~~~~~~~w~m~dgt~w~g~~--------~rdHp~iiqV~~~~ 515 (791)
||+|++. .+++|+++| |+|||+|||+| ++|||+|||||+++
T Consensus 481 Ie~l~~~~~~rs~~~n~~~e~~~~~~~~~~~~~~~~e~~~~~~~~w-m~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~ 559 (1135)
T PLN02248 481 INGLPDSIRRRSDAYNAREEIKAKKKQRESGGGDPSEPLKVPKATW-MADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKP 559 (1135)
T ss_pred HHhhhhhccccccccchhHHHHhhhhhhhhccccccccccccccee-eccCCcCCCcccCcccCCCCCCCcceeEEeccC
Confidence 9999641 135678889 99999999995 45999999999987
Q ss_pred CC------------CcCC--CCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHH
Q 003854 516 SG------------VRDV--EGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALR 581 (791)
Q Consensus 516 ~g------------~~d~--~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr 581 (791)
++ ..|. .+.+||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||++||
T Consensus 560 p~~e~~~g~~~~~~~~d~~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr 639 (1135)
T PLN02248 560 PSDEPLMGSADDENLIDFTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIR 639 (1135)
T ss_pred CCcccccCcccccccccccccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHH
Confidence 54 1122 244899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccCCCCcceEEEecCccccCCCCCCccccchhhhhhhhccccccCCCccccccchhhhhhhhcCCCCCCCCCCC
Q 003854 582 EAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSP 661 (791)
Q Consensus 582 ~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL~G~~Pp~~~~~~ 661 (791)
+||||||||+ |+++|||||||+|||++++|+|+||+++||+++|+|+||+|||+||||||+|||+||||++||+.++..
T Consensus 640 ~AMCf~lD~~-g~~vAfVQFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~~~~ 718 (1135)
T PLN02248 640 EGMCFMMDRG-GDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEHS 718 (1135)
T ss_pred hcchheecCC-CCceEEEcCCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCccccccc
Confidence 9999999997 999999999999999999999999999999999999999999999999999999999999999865443
Q ss_pred CCCCCCCCCCccccCCCCCcccccCCcchhhhcchhhhhhhhhhhhhhhhccccccccCCCcccchhHHHhhcCCChhhh
Q 003854 662 GKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFV 741 (791)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG~S~~fi 741 (791)
+. |++||+.+++++..... .+ ..+++++ +++ .++.+.++++||+|+.||
T Consensus 719 ~~--------~~~~~~~~~~~~~~~~~-------------~~-~~~~~~~------~~~---~~~~~~~~~rfG~S~~fi 767 (1135)
T PLN02248 719 GC--------FGSCKFTKKKKKETSAS-------------EP-EEQPDLE------DDD---DLELSLLPKRFGNSTMFA 767 (1135)
T ss_pred cc--------ccccccccccccccccc-------------cc-ccccccc------ccc---hhhhhhhhhhhccchhhh
Confidence 22 33344444332111100 00 0022211 111 134568899999999999
Q ss_pred hhccc-ccCCC-------------------CCCCChhhHHHHHHHcccccCCCCCcCCCceeEEecccc
Q 003854 742 DSSLL-EDGGV-------------------TGDLKRASLLKEAIQVISCGYEDKTEWGKEVSWLDIWFC 790 (791)
Q Consensus 742 ~S~~~-e~~~~-------------------~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGWiYg~~~ 790 (791)
+|+.. +.++. +....++++|+||++||||+||++|+||+||||+||++.
T Consensus 768 ~S~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~~YGSvT 836 (1135)
T PLN02248 768 ASIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDAATVAEAISVISCWYEDKTEWGDRVGWIYGSVT 836 (1135)
T ss_pred hhhHHHhhcccccccccccccccccccccccccCCcHHHHHHHHhhcccccccCCchhhhcCeeeccee
Confidence 99953 22211 122346789999999999999999999999999999974
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=1.9e-145 Score=1236.87 Aligned_cols=423 Identities=69% Similarity=1.172 Sum_probs=397.7
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCccccc
Q 003854 362 VDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYF 441 (791)
Q Consensus 362 VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~YF 441 (791)
|||||||+||.+|||++|+|||||+||+|||++||+|||||||+|+||||||.|||+|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCCcCC
Q 003854 442 SQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDV 521 (791)
Q Consensus 442 s~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~d~ 521 (791)
+++.++++++.+++|++||++|||||||||+|||.|+++.+++|+++|+|+||++|||++++|||+|||||++++++.|.
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEec
Q 003854 522 EGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQF 601 (791)
Q Consensus 522 ~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQt 601 (791)
+|++||+||||||||||+|+||+||||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCccccchhhhhhhhccccccCCCccccccchhhhhhhhcCCCCCCCCCCCCCCCCCCCCCccccCCCCCc
Q 003854 602 PQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKN 681 (791)
Q Consensus 602 PQ~F~Nid~~D~~~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL~G~~Pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (791)
||+|+|++++|+|+|++++||+++++|+||+|||+|+||||+|||+||||++||...+....+|. +|+||++.+|+
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~~----~~~~c~~~~k~ 316 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTCC----CCSCCFGRRKK 316 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCccee----eeecccCCccc
Confidence 99999999999999999999999999999999999999999999999999999988777666551 23444554444
Q ss_pred ccccCCcchhhhcchhhhhhhhhhhhhhhhccccccccCCCcccchhHHHhhcCCChhhhhhcccccCCCCCCCChhhHH
Q 003854 682 KKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLL 761 (791)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG~S~~fi~S~~~e~~~~~~~~~~~~~l 761 (791)
+ +..++ .+++..++.+++.+++++++++++.++.+++++..+++++|+++||+|++||+|+.+++++++.+.+++++|
T Consensus 317 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L 394 (720)
T PF03552_consen 317 K-KSKKK-PKKRASKRRESSSPIFALEDIEEGAEGSDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLL 394 (720)
T ss_pred c-ccccc-chhccccccccccccccccccccccccchhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHH
Confidence 3 22222 223344567788899999999999999889999999999999999999999999998888888899999999
Q ss_pred HHHHHcccccCCCCCcCCCceeEEecccc
Q 003854 762 KEAIQVISCGYEDKTEWGKEVSWLDIWFC 790 (791)
Q Consensus 762 ~eA~~V~sC~YE~~T~WG~evGWiYg~~~ 790 (791)
+||++|+||+||++|+||||||||||+++
T Consensus 395 ~EA~~V~sC~YE~~T~WGkevGwiYGSvt 423 (720)
T PF03552_consen 395 EEAIHVASCGYEDKTEWGKEVGWIYGSVT 423 (720)
T ss_pred HHHHHHhcCCccccCCcccccceEEEecc
Confidence 99999999999999999999999999975
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=4.2e-144 Score=1228.83 Aligned_cols=449 Identities=37% Similarity=0.677 Sum_probs=401.8
Q ss_pred CCCCceeeeecCCCCCChhHHHHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchhh
Q 003854 264 GRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYL 343 (791)
Q Consensus 264 ~~~pL~rk~~i~~~~~~~yR~liv~~li~l~~yl~wRi~~~~~~a~~lWl~~~i~Ei~fa~swlL~q~~kw~Pv~R~t~~ 343 (791)
+.+||++++++++++ ||++.+++++++++||+||++++++++ ++|+++++||+||+|+|+|+|++||+|++|.++|
T Consensus 7 ~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p 82 (756)
T PLN02190 7 SLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYP 82 (756)
T ss_pred CCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCCc
Confidence 457999999999984 899999999999999999999998887 6899999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhh
Q 003854 344 DRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKW 423 (791)
Q Consensus 344 drL~~r~e~~~~~~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~W 423 (791)
++|++|++ +||+||||||||||.+|||++|+|||||+||+|||++||+|||||||+|+||||||.|||+|||+|
T Consensus 83 ~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~W 156 (756)
T PLN02190 83 DRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIW 156 (756)
T ss_pred HHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhh
Confidence 99999983 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCC--CCCCCCC
Q 003854 424 VPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDG--TPWPGNN 501 (791)
Q Consensus 424 VPFCkK~~IepRaPe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dg--t~w~g~~ 501 (791)
|||||||||||||||+||+++.+ .+..++|++||++|||||||||+||++.. ....|.++++ ++|+++.
T Consensus 157 vPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~~ 227 (756)
T PLN02190 157 VPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNTK 227 (756)
T ss_pred cccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCCC
Confidence 99999999999999999998543 33458999999999999999999999874 2356766655 7899989
Q ss_pred cCCCccceeeeccCCCCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHH
Q 003854 502 VRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALR 581 (791)
Q Consensus 502 ~rdHp~iiqV~~~~~g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr 581 (791)
++|||+|||||++++++ +.+|++||+||||||||||+|+||+||||||+||||||+|||||||||||||||+|||+++|
T Consensus 228 ~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r 306 (756)
T PLN02190 228 PNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVR 306 (756)
T ss_pred CCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHH
Confidence 99999999999999765 34688999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccCCC-CcceEEEecCccccCCCCCCccccchhhhhhhhccccccCCCccccccchhhhhhhhcCCCCCCCCCC
Q 003854 582 EAMCFMMDPQS-GKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKS 660 (791)
Q Consensus 582 ~amcfflDp~~-g~~vafVQtPQ~F~Nid~~D~~~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL~G~~Pp~~~~~ 660 (791)
+|||||||+.. ++++|||||||+|+ |+|+|++++||+++++|+||+|||+|+||||+|||+||||++||...+.
T Consensus 307 ~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~~ 381 (756)
T PLN02190 307 QAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLEDD 381 (756)
T ss_pred HhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCccccccc
Confidence 99999999864 46899999999998 7899999999999999999999999999999999999999999854321
Q ss_pred CCCCCCCCCCCccccCCCCCcccccCCcchhhhcchhhhhhhhhhhhhhhhccccccccCCCcccchhHHHhhcCCChhh
Q 003854 661 PGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVF 740 (791)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG~S~~f 740 (791)
.+. .+ . . ++. .+++.+++++||+|++|
T Consensus 382 ~~~---------------------~~-~-----------------------------~-~~~-~~~~~~~~~~fg~s~~f 408 (756)
T PLN02190 382 GSL---------------------SS-V-----------------------------A-TRE-FLAEDSLAREFGNSKEM 408 (756)
T ss_pred ccc---------------------cc-c-----------------------------c-ccc-ccchhhhhhhcCCcHHH
Confidence 100 00 0 0 000 23455778999999999
Q ss_pred hhhcccccCCCC-CCCChhhHHHHHHHcccccCCCCCcCCCceeEEecccc
Q 003854 741 VDSSLLEDGGVT-GDLKRASLLKEAIQVISCGYEDKTEWGKEVSWLDIWFC 790 (791)
Q Consensus 741 i~S~~~e~~~~~-~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGWiYg~~~ 790 (791)
|+|+.++..+.+ +..+.+++++||++|+||+||++|+||+||||+||+..
T Consensus 409 ~~s~~~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSit 459 (756)
T PLN02190 409 VKSVVDALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVA 459 (756)
T ss_pred HHHHHHHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccceee
Confidence 999976543322 23345789999999999999999999999999999864
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=1.5e-135 Score=1162.25 Aligned_cols=431 Identities=35% Similarity=0.666 Sum_probs=389.2
Q ss_pred cCCCCceeeeecCCCCCChhHHHHHHHHHHHHHHHHhhhcccCCch-hHHHHHHHHHHHHHHHHHHHhhcccccccccch
Q 003854 263 EGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNA-YALWLTSVICEIWFGVSWILDQFPKWYPITRET 341 (791)
Q Consensus 263 ~~~~pL~rk~~i~~~~~~~yR~liv~~li~l~~yl~wRi~~~~~~a-~~lWl~~~i~Ei~fa~swlL~q~~kw~Pv~R~t 341 (791)
...+||+++++++++. +||+++++++++++++|+||+.+.+.+. .|+|+++++||+||+|+|+|+|++||+||+|.|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 3567999999999875 5999999999999999999999887654 789999999999999999999999999999999
Q ss_pred hhhhhhhhhhcCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHh
Q 003854 342 YLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFAR 421 (791)
Q Consensus 342 ~~drL~~r~e~~~~~~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~ 421 (791)
|+|||+++++ .++||+|||||||+||.+|||++|+|||||+||+|||++||+|||||||||+||||||.|||+||+
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999997663 368999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCC-----CC
Q 003854 422 KWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDG-----TP 496 (791)
Q Consensus 422 ~WVPFCkK~~IepRaPe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dg-----t~ 496 (791)
+||||||||+|||||||+||+++. ++|++||++||+||||||+|||+++++ ++++++ |.++++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 999999999999999999999872 467899999999999999999999976 677766 555443 78
Q ss_pred CCCCC-cCCCccceeeeccCCCCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCC
Q 003854 497 WPGNN-VRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYIN 575 (791)
Q Consensus 497 w~g~~-~rdHp~iiqV~~~~~g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yin 575 (791)
|+++. ++|||+||||+++++++.|.+|++||+|||||||||||++||+||||||++|||||+|||||||||||||||+|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 98764 77999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCccccchhhhhhhhccccccCCCccccccchhhhhhhhcCCCCC
Q 003854 576 NSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAP 655 (791)
Q Consensus 576 np~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL~G~~Pp 655 (791)
||++||+|||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998431
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCcccccCCcchhhhcchhhhhhhhhhhhhhhhccccccccCCCcccchhHHHhhcC
Q 003854 656 VKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFG 735 (791)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG 735 (791)
... +++ ..++
T Consensus 393 ~~~-------------------------------------------------~~~---------------------~~~~ 402 (734)
T PLN02893 393 LIL-------------------------------------------------PEI---------------------PELN 402 (734)
T ss_pred ccc-------------------------------------------------hhh---------------------hhcc
Confidence 000 000 0011
Q ss_pred CChhhhhhcccccCCCCCCCChhhHHHHHHHcccccCCCCCcCCCceeEEecccc
Q 003854 736 QSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVSWLDIWFC 790 (791)
Q Consensus 736 ~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGWiYg~~~ 790 (791)
++... ..+....++++||++|+||.||++|+||++|||+||+.+
T Consensus 403 ~~~~~-----------~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvt 446 (734)
T PLN02893 403 PDHLV-----------DKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLV 446 (734)
T ss_pred ccccc-----------ccccchHHHHHHhhhccccccccCCccccccceEecccc
Confidence 11111 123346679999999999999999999999999999864
No 11
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=3.1e-44 Score=310.29 Aligned_cols=80 Identities=78% Similarity=1.459 Sum_probs=42.0
Q ss_pred cccccccCCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCcCCCCCccccc
Q 003854 28 IKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDID 107 (791)
Q Consensus 28 ~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~kGsprv~gd~ee~~~d 107 (791)
+||++++++|+||||||+||+++||++|||||||+|||||||||||||||+|+|||||||||||||||||+|||||||+|
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gDeeedd~d 80 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGDEEEDDVD 80 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS-----S-
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCCccccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999998865
No 12
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=1.2e-34 Score=336.27 Aligned_cols=256 Identities=25% Similarity=0.411 Sum_probs=200.7
Q ss_pred HHHH-HHHHHHHHHHHHhhhcccCCch----hHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhcCCCCC
Q 003854 283 RLII-ILRLVILGLFFHYRILHPVNNA----YALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPS 357 (791)
Q Consensus 283 R~li-v~~li~l~~yl~wRi~~~~~~a----~~lWl~~~i~Ei~fa~swlL~q~~kw~Pv~R~t~~drL~~r~e~~~~~~ 357 (791)
|++. ++.+++.+.|++||++.+++.. ..+.++++++|+++.++.++..+..+.|.+|.+.+. +..++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~~--------~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVPL--------PLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccCC--------CCCcc
Confidence 6664 4444556899999999987642 346778999999999988888888888887754221 11346
Q ss_pred CCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCc
Q 003854 358 QLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAP 437 (791)
Q Consensus 358 ~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaP 437 (791)
.+|.|||+|||| ||++.++.+||.+++++|||.+++.|||+|||+++-|.....++
T Consensus 129 ~~P~VsViIP~y---NE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~--------------------- 184 (713)
T TIGR03030 129 EWPTVDVFIPTY---NEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPE--------------------- 184 (713)
T ss_pred cCCeeEEEEcCC---CCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhh---------------------
Confidence 799999999999 99999999999999999999999999999999887442211110
Q ss_pred ccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCC
Q 003854 438 EWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSG 517 (791)
Q Consensus 438 e~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g 517 (791)
+ +++.+-+..+++++++.
T Consensus 185 -------------------~-------~~~~~~~~~~~~l~~~~------------------------------------ 202 (713)
T TIGR03030 185 -------------------Q-------AEAAQRREELKEFCRKL------------------------------------ 202 (713)
T ss_pred -------------------h-------hhhhhhHHHHHHHHHHc------------------------------------
Confidence 0 01111112233444220
Q ss_pred CcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc-cCCCCcce
Q 003854 518 VRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKKI 596 (791)
Q Consensus 518 ~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl-Dp~~g~~v 596 (791)
.+.|+.|++ ++|+||||||++++. ++|+||+++|||+ ++.|++|++++++|. || ++
T Consensus 203 ----------~v~yi~r~~----n~~~KAgnLN~al~~----a~gd~Il~lDAD~-v~~pd~L~~~v~~f~~dp----~v 259 (713)
T TIGR03030 203 ----------GVNYITRPR----NVHAKAGNINNALKH----TDGELILIFDADH-VPTRDFLQRTVGWFVEDP----KL 259 (713)
T ss_pred ----------CcEEEECCC----CCCCChHHHHHHHHh----cCCCEEEEECCCC-CcChhHHHHHHHHHHhCC----CE
Confidence 188999987 678999999999998 7899999999999 599999999999995 66 59
Q ss_pred EEEecCccccCCCCC-------CccccchhhhhhhhccccccCCCccccccchhhhhhhh---cCCCCC
Q 003854 597 CYVQFPQRFDGIDRH-------DRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL---YGYDAP 655 (791)
Q Consensus 597 afVQtPQ~F~Nid~~-------D~~~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL---~G~~Pp 655 (791)
|+||+||.|+|.++. +.+.+++.+||..++.|++.++++++|||++++||+|| .|++..
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~~ 328 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAGE 328 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCCC
Confidence 999999999998753 24567788999999999999999999999999999999 466543
No 13
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=9e-34 Score=332.88 Aligned_cols=236 Identities=25% Similarity=0.452 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHHHhhhcccCCc----hhHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhcCCCCCCCc
Q 003854 285 IIILRLVILGLFFHYRILHPVNN----AYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQLA 360 (791)
Q Consensus 285 liv~~li~l~~yl~wRi~~~~~~----a~~lWl~~~i~Ei~fa~swlL~q~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP 360 (791)
++++.+++.++|++||++.+++. +.++.++++++|+++.++.++..+..+.|..|.+.+ +. ...+.+|
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~~--~~------~~~~~~P 260 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVP--LP------KDMSLWP 260 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC--CC------cccCCCC
Confidence 35566667889999999988763 345667899999999988888888777787775321 11 1234689
Q ss_pred ceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCcccc
Q 003854 361 KVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWY 440 (791)
Q Consensus 361 ~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~Y 440 (791)
.|||+|||| |||..++.+||.+++++|||.+++.|||+|||.++-| .
T Consensus 261 ~VsViIPtY---NE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t-------~----------------------- 307 (852)
T PRK11498 261 TVDIFVPTY---NEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEF-------R----------------------- 307 (852)
T ss_pred cEEEEEecC---CCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHH-------H-----------------------
Confidence 999999999 9999999999999999999999999999999988621 0
Q ss_pred cccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCCcC
Q 003854 441 FSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRD 520 (791)
Q Consensus 441 Fs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~d 520 (791)
+++++
T Consensus 308 -----------------------------------~la~~---------------------------------------- 312 (852)
T PRK11498 308 -----------------------------------QFAQE---------------------------------------- 312 (852)
T ss_pred -----------------------------------HHHHH----------------------------------------
Confidence 11111
Q ss_pred CCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc-cCCCCcceEEE
Q 003854 521 VEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKKICYV 599 (791)
Q Consensus 521 ~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl-Dp~~g~~vafV 599 (791)
.| +.|+.|++ +.|+||||+|++++. ++++||++||||+ ++.+++|+++|++|+ || ++|+|
T Consensus 313 -~~-----v~yI~R~~----n~~gKAGnLN~aL~~----a~GEyIavlDAD~-ip~pdfL~~~V~~f~~dP----~VglV 373 (852)
T PRK11498 313 -VG-----VKYIARPT----HEHAKAGNINNALKY----AKGEFVAIFDCDH-VPTRSFLQMTMGWFLKDK----KLAMM 373 (852)
T ss_pred -CC-----cEEEEeCC----CCcchHHHHHHHHHh----CCCCEEEEECCCC-CCChHHHHHHHHHHHhCC----CeEEE
Confidence 01 67888876 567999999999998 7899999999999 699999999999874 76 49999
Q ss_pred ecCccccCCCCCC-------ccccchhhhhhhhccccccCCCccccccchhhhhhhh---cCCCCC
Q 003854 600 QFPQRFDGIDRHD-------RYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL---YGYDAP 655 (791)
Q Consensus 600 QtPQ~F~Nid~~D-------~~~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL---~G~~Pp 655 (791)
|+||.|+|.|+.. .+.++++.||..++.|++.++++++|||++++||+|| .||+..
T Consensus 374 Qtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd~~ 439 (852)
T PRK11498 374 QTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIAVE 439 (852)
T ss_pred EcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHHHHhcCCCCC
Confidence 9999999987632 2557788999999999999999999999999999999 567654
No 14
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.87 E-value=7.1e-22 Score=204.43 Aligned_cols=110 Identities=21% Similarity=0.351 Sum_probs=91.2
Q ss_pred CeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc-cCCCCcceEEEecCccc
Q 003854 527 PSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKKICYVQFPQRF 605 (791)
Q Consensus 527 P~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl-Dp~~g~~vafVQtPQ~F 605 (791)
++++|+.|+++ .++||||||+++...+ ++++||+++|||+ ++.|++|++++.+|. ||+ +|+||+||+|
T Consensus 67 ~~v~~~~r~~~----~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~-~~~p~~l~~~v~~~~~~~~----vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRREN----TGRKAGNIADFCRRWG--SRYDYMVVLDADS-LMSGDTIVRLVRRMEANPR----AGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCCC----CCccHHHHHHHHHHhC--CCCCEEEEEeCCC-CCCHHHHHHHHHHHHhCCC----EEEEeCCcee
Confidence 56999999984 5689999999998633 6789999999999 699999999999997 874 9999999999
Q ss_pred cCCCCCCcccc----chhhhhhhhccccccCCC--ccccccchhhhhhhh
Q 003854 606 DGIDRHDRYSN----RNVVFFDINMKGLDGIQG--PIYVGTGCVFRRQAL 649 (791)
Q Consensus 606 ~Nid~~D~~~n----~n~vFfdii~~grDG~qg--p~y~GTGcv~RR~AL 649 (791)
.|.+. .+.. .+..|..+++.|++.+++ .+|+||+.++||+||
T Consensus 136 ~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al 183 (254)
T cd04191 136 IGAET--LFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAF 183 (254)
T ss_pred ECCCC--HHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHH
Confidence 98763 1221 245566778888887654 689999999999998
No 15
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.84 E-value=4.9e-20 Score=214.26 Aligned_cols=250 Identities=17% Similarity=0.166 Sum_probs=164.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcccCCchh---------HHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhh
Q 003854 281 PYRLIIILRLVILGLFFHYRILHPVNNAY---------ALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYE 351 (791)
Q Consensus 281 ~yR~liv~~li~l~~yl~wRi~~~~~~a~---------~lWl~~~i~Ei~fa~swlL~q~~kw~Pv~R~t~~drL~~r~e 351 (791)
..|++.++..++...|..|+........- .+-++++..+.+.+.+-++..+.... .|... .+...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCcccc
Confidence 46777777777888999999877644211 11122334444444444444332211 11111 0100000
Q ss_pred cCCCCCCCcceeEEEecCCCCCCCHHHHH----HHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHH
Q 003854 352 KEGKPSQLAKVDIFVSTVDPMKEPPLITA----NTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFC 427 (791)
Q Consensus 352 ~~~~~~~LP~VDVFV~T~DP~kEPp~vt~----nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFC 427 (791)
.+......|.|+|+||+| ||++..+. .|+.|+.+.+|| +++.+||+|||.++-+.. .
T Consensus 116 ~~~~~~~~~~VaVliP~y---NEd~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~--~------------- 176 (691)
T PRK05454 116 GDPPPPPEARTAILMPIY---NEDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA--A------------- 176 (691)
T ss_pred cCCCCCCCCceEEEEeCC---CCChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH--H-------------
Confidence 011235679999999999 99997654 445566678998 589999999999884211 0
Q ss_pred HhhcCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCcc
Q 003854 428 KKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPG 507 (791)
Q Consensus 428 kK~~IepRaPe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~ 507 (791)
|+ +.| .+|.++..
T Consensus 177 -------------------------------e~----~~~-------~~L~~~~~------------------------- 189 (691)
T PRK05454 177 -------------------------------EE----AAW-------LELRAELG------------------------- 189 (691)
T ss_pred -------------------------------HH----HHH-------HHHHHhcC-------------------------
Confidence 00 112 22322100
Q ss_pred ceeeeccCCCCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhccc
Q 003854 508 MIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM 587 (791)
Q Consensus 508 iiqV~~~~~g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcff 587 (791)
.-+++.|..|++ |.++||||+|.+++.++ .+.+||++||||+ ++.+++|++++.+|
T Consensus 190 -----------------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs-~m~~d~L~~lv~~m 245 (691)
T PRK05454 190 -----------------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADS-LMSGDTLVRLVRLM 245 (691)
T ss_pred -----------------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCC-CCCHHHHHHHHHHH
Confidence 013489988887 56799999999999866 6779999999999 59999999999999
Q ss_pred c-cCCCCcceEEEecCccccCCCCCCccccc----hhhhhhhhccccccCCC--ccccccchhhhhhhhc
Q 003854 588 M-DPQSGKKICYVQFPQRFDGIDRHDRYSNR----NVVFFDINMKGLDGIQG--PIYVGTGCVFRRQALY 650 (791)
Q Consensus 588 l-Dp~~g~~vafVQtPQ~F~Nid~~D~~~n~----n~vFfdii~~grDG~qg--p~y~GTGcv~RR~AL~ 650 (791)
. || ++|+||+|+.++|.+. .++.- ..+|......|++.+|+ ..|.|+|+++||+|+.
T Consensus 246 ~~dP----~vGlVQt~~~~~n~~s--lfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~ 309 (691)
T PRK05454 246 EANP----RAGLIQTLPVAVGADT--LFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFA 309 (691)
T ss_pred hhCc----CEEEEeCCccCcCCCC--HHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHH
Confidence 7 87 4999999999998752 23221 23444566778877663 6799999999999984
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=6.5e-18 Score=181.26 Aligned_cols=169 Identities=27% Similarity=0.382 Sum_probs=125.5
Q ss_pred CcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCcc
Q 003854 359 LAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPE 438 (791)
Q Consensus 359 LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe 438 (791)
+|.|+|+||++ ||++.++.+|+.|++++|||. +.|+|.|||+++-|++-+ ++++.+
T Consensus 53 ~p~vsviiP~y---nE~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~--------------~~~~~~----- 108 (439)
T COG1215 53 LPKVSVIIPAY---NEEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEIL--------------EELGAE----- 108 (439)
T ss_pred CCceEEEEecC---CCchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHH--------------HHHHhh-----
Confidence 69999999999 999999999999999999997 889999999998544322 221100
Q ss_pred cccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCC
Q 003854 439 WYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGV 518 (791)
Q Consensus 439 ~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~ 518 (791)
. +..++
T Consensus 109 ------------------------------------------~------------------------~~~~~-------- 114 (439)
T COG1215 109 ------------------------------------------Y------------------------GPNFR-------- 114 (439)
T ss_pred ------------------------------------------c------------------------CcceE--------
Confidence 0 00000
Q ss_pred cCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEE
Q 003854 519 RDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICY 598 (791)
Q Consensus 519 ~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vaf 598 (791)
++|. ++ .++.|+||+|.++.. +.+++|+++|+|+ ++.+++|++++..|.|+.. +|.
T Consensus 115 ----------~~~~--~~----~~~gK~~al~~~l~~----~~~d~V~~~DaD~-~~~~d~l~~~~~~f~~~~~---~~v 170 (439)
T COG1215 115 ----------VIYP--EK----KNGGKAGALNNGLKR----AKGDVVVILDADT-VPEPDALRELVSPFEDPPV---GAV 170 (439)
T ss_pred ----------EEec--cc----cCccchHHHHHHHhh----cCCCEEEEEcCCC-CCChhHHHHHHhhhcCCCe---eEE
Confidence 1111 12 567999999999998 5599999999999 6999999999999998753 389
Q ss_pred EecCccccCCCCCCccccchhh-----hhhhhccccccCCCccccccchhhhhhhh
Q 003854 599 VQFPQRFDGIDRHDRYSNRNVV-----FFDINMKGLDGIQGPIYVGTGCVFRRQAL 649 (791)
Q Consensus 599 VQtPQ~F~Nid~~D~~~n~n~v-----Ffdii~~grDG~qgp~y~GTGcv~RR~AL 649 (791)
+|+||.+.+.++...++..+.+ |+-....+.++....+++|++.++||+||
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL 226 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSAL 226 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHH
Confidence 9999999887652222222222 23233334444467889999999999999
No 17
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.63 E-value=1.7e-15 Score=147.77 Aligned_cols=169 Identities=31% Similarity=0.490 Sum_probs=131.0
Q ss_pred cceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCccc
Q 003854 360 AKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEW 439 (791)
Q Consensus 360 P~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~ 439 (791)
|.|.|+|||+ ||++.++..|+.|+++.+||.+++.++|.|||.+.-|.+-+
T Consensus 1 p~vsviip~~---n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~-------------------------- 51 (234)
T cd06421 1 PTVDVFIPTY---NEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALA-------------------------- 51 (234)
T ss_pred CceEEEEecC---CCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHH--------------------------
Confidence 6799999999 99989999999999999999998999999999876322111
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCCc
Q 003854 440 YFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVR 519 (791)
Q Consensus 440 YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~ 519 (791)
+++..+
T Consensus 52 -----------------------------------~~~~~~--------------------------------------- 57 (234)
T cd06421 52 -----------------------------------AELGVE--------------------------------------- 57 (234)
T ss_pred -----------------------------------HHhhcc---------------------------------------
Confidence 111000
Q ss_pred CCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEE
Q 003854 520 DVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYV 599 (791)
Q Consensus 520 d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafV 599 (791)
. .+.|+.+++ +...|+||+|.+++. ++++||+++|+|-+ ..|++|.+.+..|.+ ++++++|
T Consensus 58 ------~-~~~~~~~~~----~~~~~~~~~n~~~~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~---~~~~~~v 118 (234)
T cd06421 58 ------Y-GYRYLTRPD----NRHAKAGNLNNALAH----TTGDFVAILDADHV-PTPDFLRRTLGYFLD---DPKVALV 118 (234)
T ss_pred ------c-CceEEEeCC----CCCCcHHHHHHHHHh----CCCCEEEEEccccC-cCccHHHHHHHHHhc---CCCeEEE
Confidence 0 145555554 345899999999997 58999999999995 799999999999976 1358999
Q ss_pred ecCccccCCCCCC----ccccchhhhhhhhccccccCCCccccccchhhhhhhhc
Q 003854 600 QFPQRFDGIDRHD----RYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALY 650 (791)
Q Consensus 600 QtPQ~F~Nid~~D----~~~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL~ 650 (791)
++++.+.+.+..+ .+......|+..+..+.......++.|++.++||++|.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~~ 173 (234)
T cd06421 119 QTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREALD 173 (234)
T ss_pred ecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHHH
Confidence 9999998776542 23334556666666676666778899999999999994
No 18
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.61 E-value=7e-15 Score=162.34 Aligned_cols=170 Identities=19% Similarity=0.200 Sum_probs=122.7
Q ss_pred CCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCc
Q 003854 358 QLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAP 437 (791)
Q Consensus 358 ~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaP 437 (791)
..|.|+|+||+| ||+.. +.+||.|+++.+|| ++.|+|.|||.++-|.+.+.+
T Consensus 73 ~~p~vsViIP~y---NE~~~-i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~---------------------- 124 (444)
T PRK14583 73 GHPLVSILVPCF---NEGLN-ARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA---------------------- 124 (444)
T ss_pred CCCcEEEEEEeC---CCHHH-HHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH----------------------
Confidence 579999999999 99865 68999999999999 489999999988754332211
Q ss_pred ccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCC
Q 003854 438 EWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSG 517 (791)
Q Consensus 438 e~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g 517 (791)
+.++
T Consensus 125 ---------------------------------------~~~~------------------------------------- 128 (444)
T PRK14583 125 ---------------------------------------LLAE------------------------------------- 128 (444)
T ss_pred ---------------------------------------HHHh-------------------------------------
Confidence 1110
Q ss_pred CcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc-cCCCCcce
Q 003854 518 VRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKKI 596 (791)
Q Consensus 518 ~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl-Dp~~g~~v 596 (791)
.|++.++.++++ ..||+|+|.+++. ++++||+++|+|. +++|++|++.+-.|. || ++
T Consensus 129 --------~~~v~vv~~~~n-----~Gka~AlN~gl~~----a~~d~iv~lDAD~-~~~~d~L~~lv~~~~~~~----~~ 186 (444)
T PRK14583 129 --------DPRLRVIHLAHN-----QGKAIALRMGAAA----ARSEYLVCIDGDA-LLDKNAVPYLVAPLIANP----RT 186 (444)
T ss_pred --------CCCEEEEEeCCC-----CCHHHHHHHHHHh----CCCCEEEEECCCC-CcCHHHHHHHHHHHHhCC----Ce
Confidence 022444444432 3599999999987 6799999999999 699999999998776 44 58
Q ss_pred EEEecCccccCCCCCCcccc----chhhhhhhhccccccCCCcc-ccccchhhhhhhh---cCCCCC
Q 003854 597 CYVQFPQRFDGIDRHDRYSN----RNVVFFDINMKGLDGIQGPI-YVGTGCVFRRQAL---YGYDAP 655 (791)
Q Consensus 597 afVQtPQ~F~Nid~~D~~~n----~n~vFfdii~~grDG~qgp~-y~GTGcv~RR~AL---~G~~Pp 655 (791)
+.||..++..|.. ..++. +...++..+.++....+..+ .+|++++|||+|| .|+++.
T Consensus 187 g~v~g~~~~~~~~--~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~~~ 251 (444)
T PRK14583 187 GAVTGNPRIRTRS--TLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWSPD 251 (444)
T ss_pred EEEEccceecCCC--cchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHHHcCCCCCC
Confidence 9999987765532 22222 22334455666666566654 4699999999999 455554
No 19
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.57 E-value=4.1e-14 Score=140.15 Aligned_cols=175 Identities=22% Similarity=0.262 Sum_probs=123.5
Q ss_pred cceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCccc
Q 003854 360 AKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEW 439 (791)
Q Consensus 360 P~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~ 439 (791)
|.|.|+||+| ||.. .+..+|.|+++.+||.+++.|+|.|| ++.-|+..+.+.. +
T Consensus 1 p~vSViIp~y---Ne~~-~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~---~------------------ 54 (232)
T cd06437 1 PMVTVQLPVF---NEKY-VVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIV---E------------------ 54 (232)
T ss_pred CceEEEEecC---CcHH-HHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHH---H------------------
Confidence 6799999999 9964 67899999999999999999999998 5654544432210 0
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCCc
Q 003854 440 YFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVR 519 (791)
Q Consensus 440 YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~ 519 (791)
....
T Consensus 55 ------------------------------------~~~~---------------------------------------- 58 (232)
T cd06437 55 ------------------------------------EYAA---------------------------------------- 58 (232)
T ss_pred ------------------------------------HHhh----------------------------------------
Confidence 0000
Q ss_pred CCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEE
Q 003854 520 DVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYV 599 (791)
Q Consensus 520 d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafV 599 (791)
.-+++.++.+.+++| +||+|+|.+++. +.++||+++|+|.+ +.|++|++++.+|.+| ++++|
T Consensus 59 -----~~~~i~~~~~~~~~G----~k~~a~n~g~~~----a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v 120 (232)
T cd06437 59 -----QGVNIKHVRRADRTG----YKAGALAEGMKV----AKGEYVAIFDADFV-PPPDFLQKTPPYFADP----KLGFV 120 (232)
T ss_pred -----cCCceEEEECCCCCC----CchHHHHHHHHh----CCCCEEEEEcCCCC-CChHHHHHhhhhhcCC----CeEEE
Confidence 013477777776555 699999999997 58999999999995 8999999988777776 48999
Q ss_pred ecCccccCCCCCCc--c-ccchhhhhhhhccccccCCCc-cccccchhhhhhhh---cCCCC
Q 003854 600 QFPQRFDGIDRHDR--Y-SNRNVVFFDINMKGLDGIQGP-IYVGTGCVFRRQAL---YGYDA 654 (791)
Q Consensus 600 QtPQ~F~Nid~~D~--~-~n~n~vFfdii~~grDG~qgp-~y~GTGcv~RR~AL---~G~~P 654 (791)
|....+.|.+.+-. + .-....+|...+.++...+.. .++|++++|||++| .||++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~vgg~~~ 182 (232)
T cd06437 121 QTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGTAGVWRKECIEDAGGWNH 182 (232)
T ss_pred ecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccchhhhhHHHHHHhCCCCC
Confidence 99877665433211 0 011122444444454444443 36899999999998 46654
No 20
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.51 E-value=2.2e-13 Score=150.70 Aligned_cols=123 Identities=20% Similarity=0.340 Sum_probs=93.3
Q ss_pred CCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCC
Q 003854 357 SQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRA 436 (791)
Q Consensus 357 ~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRa 436 (791)
..+|.|+|+||+| ||. ..+.+||.|+++.+||.+++.|+|.|||.++-|.+.+.+
T Consensus 46 ~~~P~vsVIIP~y---Ne~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~--------------------- 100 (439)
T TIGR03111 46 GKLPDITIIIPVY---NSE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCR--------------------- 100 (439)
T ss_pred CCCCCEEEEEEeC---CCh-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHH---------------------
Confidence 5689999999999 888 788999999999999999999999999998855433322
Q ss_pred cccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCC
Q 003854 437 PEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQS 516 (791)
Q Consensus 437 Pe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~ 516 (791)
+.++ +|.+
T Consensus 101 ----------------------------------------~~~~------------------------~~~v-------- 108 (439)
T TIGR03111 101 ----------------------------------------AQNE------------------------FPGL-------- 108 (439)
T ss_pred ----------------------------------------HHHh------------------------CCCe--------
Confidence 1100 0000
Q ss_pred CCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc-cCCCCcc
Q 003854 517 GVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKK 595 (791)
Q Consensus 517 g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl-Dp~~g~~ 595 (791)
.++++ ++ .+.||+|+|.+++. ++++||+++|+|. +++|++|++++..|. || +
T Consensus 109 -----------~v~~~--~~-----~~Gka~AlN~gl~~----s~g~~v~~~DaD~-~~~~d~L~~l~~~f~~~~----~ 161 (439)
T TIGR03111 109 -----------SLRYM--NS-----DQGKAKALNAAIYN----SIGKYIIHIDSDG-KLHKDAIKNMVTRFENNP----D 161 (439)
T ss_pred -----------EEEEe--CC-----CCCHHHHHHHHHHH----ccCCEEEEECCCC-CcChHHHHHHHHHHHhCC----C
Confidence 02222 11 24799999999997 6799999999999 589999999999986 55 3
Q ss_pred eEEEecCc
Q 003854 596 ICYVQFPQ 603 (791)
Q Consensus 596 vafVQtPQ 603 (791)
++.|+..+
T Consensus 162 v~~v~g~~ 169 (439)
T TIGR03111 162 IHAMTGVI 169 (439)
T ss_pred eEEEEeEE
Confidence 66665543
No 21
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.48 E-value=4.4e-13 Score=145.41 Aligned_cols=171 Identities=21% Similarity=0.259 Sum_probs=120.2
Q ss_pred CCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCC
Q 003854 357 SQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRA 436 (791)
Q Consensus 357 ~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRa 436 (791)
...|.|.|+||++ ||+ ..+.+|+.|+++.+|| ++.++|.|||.++-|.+.+.
T Consensus 51 ~~~p~vsViIp~y---ne~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~---------------------- 102 (420)
T PRK11204 51 KEYPGVSILVPCY---NEG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILD---------------------- 102 (420)
T ss_pred CCCCCEEEEEecC---CCH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHH----------------------
Confidence 4689999999999 886 5679999999999999 58899999998874322211
Q ss_pred cccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCC
Q 003854 437 PEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQS 516 (791)
Q Consensus 437 Pe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~ 516 (791)
++.+
T Consensus 103 ---------------------------------------~~~~------------------------------------- 106 (420)
T PRK11204 103 ---------------------------------------RLAA------------------------------------- 106 (420)
T ss_pred ---------------------------------------HHHH-------------------------------------
Confidence 1110
Q ss_pred CCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc-cCCCCcc
Q 003854 517 GVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKK 595 (791)
Q Consensus 517 g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl-Dp~~g~~ 595 (791)
..|++.++.++++ ..||+|+|.+++. ++++||+++|+|. ++.|++|.+++..|. || +
T Consensus 107 --------~~~~v~~i~~~~n-----~Gka~aln~g~~~----a~~d~i~~lDaD~-~~~~d~L~~l~~~~~~~~----~ 164 (420)
T PRK11204 107 --------QIPRLRVIHLAEN-----QGKANALNTGAAA----ARSEYLVCIDGDA-LLDPDAAAYMVEHFLHNP----R 164 (420)
T ss_pred --------hCCcEEEEEcCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCC-CCChhHHHHHHHHHHhCC----C
Confidence 0133666665543 3599999999997 6799999999999 599999999999985 65 5
Q ss_pred eEEEecCccccCCCCCCccccchhh----hhhhhccccccCCCcc-ccccchhhhhhhh---cCCCCC
Q 003854 596 ICYVQFPQRFDGIDRHDRYSNRNVV----FFDINMKGLDGIQGPI-YVGTGCVFRRQAL---YGYDAP 655 (791)
Q Consensus 596 vafVQtPQ~F~Nid~~D~~~n~n~v----Ffdii~~grDG~qgp~-y~GTGcv~RR~AL---~G~~Pp 655 (791)
++.||+..+..|.. ...+..+.. ++.....+....+..+ ..|+++++||++| .|+++.
T Consensus 165 v~~v~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~~~ 230 (420)
T PRK11204 165 VGAVTGNPRIRNRS--TLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWSTD 230 (420)
T ss_pred eEEEECCceeccch--hHHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCCCC
Confidence 89999987776542 122222211 2222233333333333 4699999999998 455554
No 22
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.46 E-value=4.9e-13 Score=134.03 Aligned_cols=174 Identities=22% Similarity=0.300 Sum_probs=123.0
Q ss_pred cceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCccc
Q 003854 360 AKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEW 439 (791)
Q Consensus 360 P~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~ 439 (791)
|.|.|+||++ ||+ ..+..||.|+++.+||.+++.|+|.|||.+.-|.+-+.+
T Consensus 1 p~vsIiIp~~---Ne~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~------------------------ 52 (241)
T cd06427 1 PVYTILVPLY---KEA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA------------------------ 52 (241)
T ss_pred CeEEEEEecC---CcH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH------------------------
Confidence 6799999999 997 678999999999999988899999999988754332211
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCCc
Q 003854 440 YFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVR 519 (791)
Q Consensus 440 YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~ 519 (791)
+..+
T Consensus 53 -------------------------------------~~~~--------------------------------------- 56 (241)
T cd06427 53 -------------------------------------LRLP--------------------------------------- 56 (241)
T ss_pred -------------------------------------hccC---------------------------------------
Confidence 0000
Q ss_pred CCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEE
Q 003854 520 DVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYV 599 (791)
Q Consensus 520 d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafV 599 (791)
.-.+++++.+.+ -..|++|+|.+++. +.++||+.+|+|. +..+++|.+++.+|... ..++++|
T Consensus 57 -----~~~~i~~~~~~~-----~~G~~~a~n~g~~~----a~gd~i~~~DaD~-~~~~~~l~~~~~~~~~~--~~~v~~~ 119 (241)
T cd06427 57 -----SIFRVVVVPPSQ-----PRTKPKACNYALAF----ARGEYVVIYDAED-APDPDQLKKAVAAFARL--DDKLACV 119 (241)
T ss_pred -----CCeeEEEecCCC-----CCchHHHHHHHHHh----cCCCEEEEEcCCC-CCChHHHHHHHHHHHhc--CCCEEEE
Confidence 001244443322 13699999999997 6799999999999 48999999999999731 2479999
Q ss_pred ecCccccCCCCCCc---cccchhhhhhhhccccccCCCcc-ccccchhhhhhhh---cCCCC
Q 003854 600 QFPQRFDGIDRHDR---YSNRNVVFFDINMKGLDGIQGPI-YVGTGCVFRRQAL---YGYDA 654 (791)
Q Consensus 600 QtPQ~F~Nid~~D~---~~n~n~vFfdii~~grDG~qgp~-y~GTGcv~RR~AL---~G~~P 654 (791)
|.+..+++...+-. +......+|....++...++.++ +.|++.++||++| .|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~vgg~~~ 181 (241)
T cd06427 120 QAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGGTSNHFRTDVLRELGGWDP 181 (241)
T ss_pred eCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchHHhhHHHHHHcCCCCc
Confidence 99988876532210 11111233455556666566554 5789999999998 55654
No 23
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.44 E-value=1.8e-12 Score=128.05 Aligned_cols=165 Identities=29% Similarity=0.420 Sum_probs=115.0
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCccccccc
Q 003854 364 IFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQ 443 (791)
Q Consensus 364 VFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~YFs~ 443 (791)
|+|||+ ||++.++..|+.|+++.+||. +.++|.|||...-|+-..
T Consensus 2 iiip~~---ne~~~~l~~~l~sl~~q~~~~--~eiiVvdd~s~D~t~~~~------------------------------ 46 (236)
T cd06435 2 IHVPCY---EEPPEMVKETLDSLAALDYPN--FEVIVIDNNTKDEALWKP------------------------------ 46 (236)
T ss_pred eeEeeC---CCcHHHHHHHHHHHHhCCCCC--cEEEEEeCCCCchhHHHH------------------------------
Confidence 789999 999999999999999999995 789999999876432110
Q ss_pred ccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCCcCCCC
Q 003854 444 KIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEG 523 (791)
Q Consensus 444 ~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~d~~g 523 (791)
|+++..+. +
T Consensus 47 ------------------------------i~~~~~~~-----------------------------------------~ 55 (236)
T cd06435 47 ------------------------------VEAHCAQL-----------------------------------------G 55 (236)
T ss_pred ------------------------------HHHHHHHh-----------------------------------------C
Confidence 11111110 0
Q ss_pred CCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCc
Q 003854 524 NELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQ 603 (791)
Q Consensus 524 ~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ 603 (791)
+++.++..++.+| .||||+|.+++.+. .+++||+++|+|- +..|++|.+++.+|.++ ++++||+++
T Consensus 56 ---~~i~~i~~~~~~G----~~~~a~n~g~~~a~--~~~d~i~~lD~D~-~~~~~~l~~l~~~~~~~----~~~~v~~~~ 121 (236)
T cd06435 56 ---ERFRFFHVEPLPG----AKAGALNYALERTA--PDAEIIAVIDADY-QVEPDWLKRLVPIFDDP----RVGFVQAPQ 121 (236)
T ss_pred ---CcEEEEEcCCCCC----CchHHHHHHHHhcC--CCCCEEEEEcCCC-CcCHHHHHHHHHHhcCC----CeeEEecCc
Confidence 1255565554333 69999999999743 4689999999998 69999999999998765 589999987
Q ss_pred cccCCCCCCccc----cchhhhhhhhccccccCCCccccccchhhhhhhh
Q 003854 604 RFDGIDRHDRYS----NRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL 649 (791)
Q Consensus 604 ~F~Nid~~D~~~----n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL 649 (791)
.+.+... .++. -....+|......+...+..++.|+++++||+++
T Consensus 122 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~ 170 (236)
T cd06435 122 DYRDGEE-SLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSAL 170 (236)
T ss_pred cccCCCc-cHHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEHHHH
Confidence 6654321 1111 0111223333344455556678899999999998
No 24
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.43 E-value=4.7e-14 Score=138.20 Aligned_cols=172 Identities=28% Similarity=0.429 Sum_probs=99.5
Q ss_pred cceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCccc
Q 003854 360 AKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEW 439 (791)
Q Consensus 360 P~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~ 439 (791)
|.|.|+|+++ +|+. .+..||.|+++.+|| ++.++|.||+...-|.+.
T Consensus 1 P~v~Vvip~~---~~~~-~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~--------------------------- 47 (228)
T PF13641_consen 1 PRVSVVIPAY---NEDD-VLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEI--------------------------- 47 (228)
T ss_dssp --EEEE--BS---S-HH-HHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTT---------------------------
T ss_pred CEEEEEEEec---CCHH-HHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHH---------------------------
Confidence 7799999999 8877 888999999999995 499999999877632211
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCCc
Q 003854 440 YFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVR 519 (791)
Q Consensus 440 YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~ 519 (791)
+++++++. |+
T Consensus 48 ----------------------------------~~~~~~~~------------------------~~------------ 57 (228)
T PF13641_consen 48 ----------------------------------LRALAARY------------------------PR------------ 57 (228)
T ss_dssp ----------------------------------HHHHHHTT------------------------GG------------
T ss_pred ----------------------------------HHHHHHHc------------------------CC------------
Confidence 11222110 00
Q ss_pred CCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEE
Q 003854 520 DVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYV 599 (791)
Q Consensus 520 d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafV 599 (791)
. .+.++.+.+.+| ...|++|+|.+++. ..+++|+++|+|. ++.|++|++++.+|.+| ++++|
T Consensus 58 --~-----~v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~-~~~p~~l~~~~~~~~~~----~~~~v 119 (228)
T PF13641_consen 58 --V-----RVRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDT-VLDPDWLERLLAAFADP----GVGAV 119 (228)
T ss_dssp --------GEEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSE-EE-CHHHHHHHHHHHBS----S--EE
T ss_pred --C-----ceEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCc-EECHHHHHHHHHHHHhC----CCCeE
Confidence 0 156666654332 23699999999997 5599999999999 58999999999999776 48899
Q ss_pred ecCccccCCCCCCccccchhhhhh----hhccccccCCCccccccchhhhhhhh---cCCCC
Q 003854 600 QFPQRFDGIDRHDRYSNRNVVFFD----INMKGLDGIQGPIYVGTGCVFRRQAL---YGYDA 654 (791)
Q Consensus 600 QtPQ~F~Nid~~D~~~n~n~vFfd----ii~~grDG~qgp~y~GTGcv~RR~AL---~G~~P 654 (791)
|++..+++ +. ..+..-+..+|. ....+...++.++++|++++|||++| .||+|
T Consensus 120 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd~ 179 (228)
T PF13641_consen 120 GGPVFPDN-DR-NWLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSALEEVGGFDP 179 (228)
T ss_dssp EEEEEETT-CC-CEEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHHHHH-S--S
T ss_pred eeeEeecC-CC-CHHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHHHHhCCCCC
Confidence 98886654 22 222222223321 22344455566778999999999999 47766
No 25
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.41 E-value=1.1e-12 Score=127.79 Aligned_cols=115 Identities=16% Similarity=0.071 Sum_probs=82.9
Q ss_pred EEEEeccCCCCCCCccchhhhhHHHHHhcc-------CCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEec
Q 003854 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAV-------LSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQF 601 (791)
Q Consensus 529 lvYvSReKrPg~~Hh~KAGalN~lLrvSa~-------ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQt 601 (791)
+.++.+.... ....|++|||.+++.+.- -..+++|+++|+|. ++.|++|+.++.+|.+|+ ++.||.
T Consensus 52 v~~i~~~~~~--~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~-~~~~~~l~~~~~~~~~~~----v~~v~~ 124 (191)
T cd06436 52 VHLLRRHLPN--ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADG-RLDPNALEAVAPYFSDPR----VAGTQS 124 (191)
T ss_pred EEEEeccCCc--CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCC-CcCHhHHHHHHHhhcCCc----eEEEee
Confidence 5666554211 123699999999987420 01247999999999 599999999999888874 889999
Q ss_pred CccccCCCCCCc---cccchhhhhhhhccccccCCCccccccchhhhhhhhc
Q 003854 602 PQRFDGIDRHDR---YSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALY 650 (791)
Q Consensus 602 PQ~F~Nid~~D~---~~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL~ 650 (791)
+.+++|.+.+-. ...+-..++..++.++..++...+.|+|++|||+||.
T Consensus 125 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l~ 176 (191)
T cd06436 125 RVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSALD 176 (191)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHHH
Confidence 999988654321 1112222345677888777776789999999999994
No 26
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.37 E-value=6.3e-12 Score=142.64 Aligned_cols=171 Identities=19% Similarity=0.204 Sum_probs=117.2
Q ss_pred CCcceeEEEecCCCCCCCHHHHHHHHHHHH-cCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCC
Q 003854 358 QLAKVDIFVSTVDPMKEPPLITANTVLSIL-AVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRA 436 (791)
Q Consensus 358 ~LP~VDVFV~T~DP~kEPp~vt~nTVlS~l-AlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRa 436 (791)
..|.|.|+||.+ ||. .++.+||.+++ ++||| ++.|+|.||+..+-|.+.+.+
T Consensus 64 ~~p~vaIlIPA~---NE~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~--------------------- 116 (504)
T PRK14716 64 PEKRIAIFVPAW---REA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDR--------------------- 116 (504)
T ss_pred CCCceEEEEecc---Cch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHH---------------------
Confidence 489999999999 996 58999999975 79996 699999999888765444322
Q ss_pred cccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCC
Q 003854 437 PEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQS 516 (791)
Q Consensus 437 Pe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~ 516 (791)
+++ .||+
T Consensus 117 ----------------------------------------l~~------------------------~~p~--------- 123 (504)
T PRK14716 117 ----------------------------------------LAA------------------------RYPR--------- 123 (504)
T ss_pred ----------------------------------------HHH------------------------HCCC---------
Confidence 111 1222
Q ss_pred CCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhcc--CCCC---CEEEEecCCCCCChHHHHHHhhcccccCC
Q 003854 517 GVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAV--LSNA---PYLLNVDCDHYINNSKALREAMCFMMDPQ 591 (791)
Q Consensus 517 g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~--ltng---pfILnlDcD~yinnp~~Lr~amcfflDp~ 591 (791)
+..+. .+++| .+.||+|||.+++..-- ...+ ++|+++|||. +++|++|+...-++-|
T Consensus 124 ------------v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~-~v~Pd~Lr~~~~~~~~-- 185 (504)
T PRK14716 124 ------------VHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAED-VIHPLELRLYNYLLPR-- 185 (504)
T ss_pred ------------eEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCC-CcCccHHHHHHhhcCC--
Confidence 21111 12222 25899999999976310 1133 9999999999 5999999976554433
Q ss_pred CCcceEEEecCccccCCCCCCccccch----hhhhhhhccccccCCCcc-ccccchhhhhhhhc
Q 003854 592 SGKKICYVQFPQRFDGIDRHDRYSNRN----VVFFDINMKGLDGIQGPI-YVGTGCVFRRQALY 650 (791)
Q Consensus 592 ~g~~vafVQtPQ~F~Nid~~D~~~n~n----~vFfdii~~grDG~qgp~-y~GTGcv~RR~AL~ 650 (791)
.++||.|....+.+.+...+... ..++...+..++.+++++ ++|||++|||++|.
T Consensus 186 ----~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe 245 (504)
T PRK14716 186 ----HDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALE 245 (504)
T ss_pred ----CCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHH
Confidence 35999998766543332222211 222334566778888865 89999999999995
No 27
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.32 E-value=1.8e-11 Score=132.50 Aligned_cols=172 Identities=19% Similarity=0.237 Sum_probs=114.4
Q ss_pred CCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCc
Q 003854 358 QLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAP 437 (791)
Q Consensus 358 ~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaP 437 (791)
..|.|.|+||++ ||... +.+|+.|+++.|||. +.|+|.||+.+.-|.+-+ +
T Consensus 39 ~~p~VSViiP~~---nee~~-l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv-~---------------------- 89 (373)
T TIGR03472 39 AWPPVSVLKPLH---GDEPE-LYENLASFCRQDYPG--FQMLFGVQDPDDPALAVV-R---------------------- 89 (373)
T ss_pred CCCCeEEEEECC---CCChh-HHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHH-H----------------------
Confidence 489999999999 99875 679999999999996 889999998776433211 1
Q ss_pred ccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCC
Q 003854 438 EWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSG 517 (791)
Q Consensus 438 e~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g 517 (791)
++.++ ||.
T Consensus 90 --------------------------------------~~~~~------------------------~p~---------- 97 (373)
T TIGR03472 90 --------------------------------------RLRAD------------------------FPD---------- 97 (373)
T ss_pred --------------------------------------HHHHh------------------------CCC----------
Confidence 11110 110
Q ss_pred CcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceE
Q 003854 518 VRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKIC 597 (791)
Q Consensus 518 ~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~va 597 (791)
.++.++.+.++.| .+.|++|+|++++. +.+++|+++|+|. ++.|++|++++..|.||+ ++
T Consensus 98 ---------~~i~~v~~~~~~G--~~~K~~~l~~~~~~----a~ge~i~~~DaD~-~~~p~~L~~lv~~~~~~~----v~ 157 (373)
T TIGR03472 98 ---------ADIDLVIDARRHG--PNRKVSNLINMLPH----ARHDILVIADSDI-SVGPDYLRQVVAPLADPD----VG 157 (373)
T ss_pred ---------CceEEEECCCCCC--CChHHHHHHHHHHh----ccCCEEEEECCCC-CcChhHHHHHHHHhcCCC----cc
Confidence 1255554444333 45799999999876 6899999999999 589999999999998874 78
Q ss_pred EEecCccccCCCCCCccccc------hhhhhhhhccccccCC-Cccccccchhhhhhhh---cCCCC
Q 003854 598 YVQFPQRFDGIDRHDRYSNR------NVVFFDINMKGLDGIQ-GPIYVGTGCVFRRQAL---YGYDA 654 (791)
Q Consensus 598 fVQtPQ~F~Nid~~D~~~n~------n~vFfdii~~grDG~q-gp~y~GTGcv~RR~AL---~G~~P 654 (791)
+|+++.... +... +... +..|+...... .-++ ..++.|++.++||++| .||+.
T Consensus 158 ~V~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~a~RR~~l~~iGGf~~ 220 (373)
T TIGR03472 158 LVTCLYRGR--PVPG-FWSRLGAMGINHNFLPSVMVA-RALGRARFCFGATMALRRATLEAIGGLAA 220 (373)
T ss_pred eEeccccCC--CCCC-HHHHHHHHHhhhhhhHHHHHH-HhccCCccccChhhheeHHHHHHcCChHH
Confidence 999864322 1111 1111 11122111111 1112 2357799999999999 56653
No 28
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.28 E-value=1.9e-11 Score=117.61 Aligned_cols=104 Identities=18% Similarity=0.128 Sum_probs=72.6
Q ss_pred ccchhhhhHHHHHhc-cCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCcccc----c
Q 003854 543 HKKAGAMNALVRVSA-VLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSN----R 617 (791)
Q Consensus 543 h~KAGalN~lLrvSa-~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n----~ 617 (791)
..|++|+|.+++... .-+++++|+++|+|. ++.|++|++++-.|.+. ...||......+.+.+ .+.. .
T Consensus 62 ~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~-~~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~~~-~~~~~~~~~ 134 (183)
T cd06438 62 RGKGYALDFGFRHLLNLADDPDAVVVFDADN-LVDPNALEELNARFAAG-----ARVVQAYYNSKNPDDS-WITRLYAFA 134 (183)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCEEEEEcCCC-CCChhHHHHHHHHHhhC-----CCeeEEEEeeeCCccC-HHHHHHHHH
Confidence 469999999998641 125799999999999 48899999999988642 2478887766654322 1111 1
Q ss_pred hhhhhhhhccccccCCCc-cccccchhhhhhhh--cCCC
Q 003854 618 NVVFFDINMKGLDGIQGP-IYVGTGCVFRRQAL--YGYD 653 (791)
Q Consensus 618 n~vFfdii~~grDG~qgp-~y~GTGcv~RR~AL--~G~~ 653 (791)
..+++.+...++..+++. .+.|+|.+|||++| .|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~g~~ 173 (183)
T cd06438 135 FLVFNRLRPLGRSNLGLSCQLGGTGMCFPWAVLRQAPWA 173 (183)
T ss_pred HHHHHHHHHHHHHHcCCCeeecCchhhhHHHHHHhCCCC
Confidence 223334445566666654 57999999999999 4554
No 29
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.23 E-value=5.6e-11 Score=139.98 Aligned_cols=97 Identities=16% Similarity=0.233 Sum_probs=66.4
Q ss_pred ccchhhhhHHHHHhccC---CCC--CEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCcccc-
Q 003854 543 HKKAGAMNALVRVSAVL---SNA--PYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSN- 616 (791)
Q Consensus 543 h~KAGalN~lLrvSa~l---tng--pfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n- 616 (791)
+.||+|||.++...--. +.+ ..++++|||- ++.|++|+ .+-+|.++. ++||.|..-.+...+...+.
T Consensus 132 ~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~-~v~pd~L~-~~~~l~~~~-----~~VQ~p~~p~~~~~~~~~~~~ 204 (727)
T PRK11234 132 TSKADCLNNVLDAITQFERSANFAFAGFILHDAED-VISPMELR-LFNYLVERK-----DLIQIPVYPFEREWTHFTSGT 204 (727)
T ss_pred CCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCC-CCChhHHH-HHHhhcCCC-----CeEeecccCCCccHHHHHHHH
Confidence 47999999999874111 133 4688899999 69999998 678888752 69999966222221222222
Q ss_pred ---chhhhhhhhccccccCCCc-cccccchhh-hh
Q 003854 617 ---RNVVFFDINMKGLDGIQGP-IYVGTGCVF-RR 646 (791)
Q Consensus 617 ---~n~vFfdii~~grDG~qgp-~y~GTGcv~-RR 646 (791)
+....+...++++..++|+ .+.|||++| ||
T Consensus 205 ~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr 239 (727)
T PRK11234 205 YIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRR 239 (727)
T ss_pred HHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecc
Confidence 2223344667888998775 588999999 66
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.20 E-value=1e-10 Score=113.44 Aligned_cols=170 Identities=18% Similarity=0.255 Sum_probs=111.9
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCccccccc
Q 003854 364 IFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQ 443 (791)
Q Consensus 364 VFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~YFs~ 443 (791)
|+|||+ +|+ ..+..||.|++..+||.+++.|+|.|||.+.-|.+-+.
T Consensus 1 viip~~---n~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~----------------------------- 47 (229)
T cd04192 1 VVIAAR---NEA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE----------------------------- 47 (229)
T ss_pred CEEEec---CcH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-----------------------------
Confidence 689999 776 77899999999999999899999999998764322111
Q ss_pred ccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCCcCCCC
Q 003854 444 KIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEG 523 (791)
Q Consensus 444 ~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~d~~g 523 (791)
...+.
T Consensus 48 ---------------------------------~~~~~------------------------------------------ 52 (229)
T cd04192 48 ---------------------------------FAAAK------------------------------------------ 52 (229)
T ss_pred ---------------------------------HHHhC------------------------------------------
Confidence 00000
Q ss_pred CCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCc
Q 003854 524 NELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQ 603 (791)
Q Consensus 524 ~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ 603 (791)
..|++.++.++. + .-..|+.++|.++.. +.++||+++|+|. ++.|++|.+++.+|.++ ..++|+.++
T Consensus 53 -~~~~v~~~~~~~--~-~~~g~~~a~n~g~~~----~~~d~i~~~D~D~-~~~~~~l~~l~~~~~~~----~~~~v~~~~ 119 (229)
T cd04192 53 -PNFQLKILNNSR--V-SISGKKNALTTAIKA----AKGDWIVTTDADC-VVPSNWLLTFVAFIQKE----QIGLVAGPV 119 (229)
T ss_pred -CCcceEEeeccC--c-ccchhHHHHHHHHHH----hcCCEEEEECCCc-ccCHHHHHHHHHHhhcC----CCcEEeeee
Confidence 012355554442 1 125789999999987 5699999999999 58999999999988754 367888888
Q ss_pred cccCCCCCC-ccccchhhhhhhhccccccCCCc-cccccchhhhhhhh---cCCCC
Q 003854 604 RFDGIDRHD-RYSNRNVVFFDINMKGLDGIQGP-IYVGTGCVFRRQAL---YGYDA 654 (791)
Q Consensus 604 ~F~Nid~~D-~~~n~n~vFfdii~~grDG~qgp-~y~GTGcv~RR~AL---~G~~P 654 (791)
.+...+... .+..-...+......+.-+++.+ ++.|++.++||+++ .||++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~ 175 (229)
T cd04192 120 IYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEG 175 (229)
T ss_pred eecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCcc
Confidence 876221100 11111111111222223333343 46788899999998 56654
No 31
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.15 E-value=5.3e-10 Score=111.54 Aligned_cols=170 Identities=19% Similarity=0.230 Sum_probs=113.1
Q ss_pred CCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCC
Q 003854 356 PSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPR 435 (791)
Q Consensus 356 ~~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepR 435 (791)
....|.|.|+|+|+ +|+ ..+..++.|+++.+||.+++.++|.|||.++-|.+.+.
T Consensus 25 ~~~~~~isVvip~~---n~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~--------------------- 79 (251)
T cd06439 25 PAYLPTVTIIIPAY---NEE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAR--------------------- 79 (251)
T ss_pred CCCCCEEEEEEecC---CcH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHH---------------------
Confidence 35689999999999 776 66789999999999998889999999998874322111
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccC
Q 003854 436 APEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 515 (791)
Q Consensus 436 aPe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~ 515 (791)
.+.+
T Consensus 80 ----------------------------------------~~~~------------------------------------ 83 (251)
T cd06439 80 ----------------------------------------EYAD------------------------------------ 83 (251)
T ss_pred ----------------------------------------HHhh------------------------------------
Confidence 0100
Q ss_pred CCCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcc
Q 003854 516 SGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKK 595 (791)
Q Consensus 516 ~g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~ 595 (791)
. .+.++..+++ ..|++|+|.+++. +.+++|+++|+|.+ +.+++|.+.+-.|.++ +
T Consensus 84 ---------~--~v~~i~~~~~-----~g~~~a~n~gi~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~ 138 (251)
T cd06439 84 ---------K--GVKLLRFPER-----RGKAAALNRALAL----ATGEIVVFTDANAL-LDPDALRLLVRHFADP----S 138 (251)
T ss_pred ---------C--cEEEEEcCCC-----CChHHHHHHHHHH----cCCCEEEEEccccC-cCHHHHHHHHHHhcCC----C
Confidence 0 1344444432 3599999999997 56899999999995 6799999999999765 4
Q ss_pred eEEEecCccccCCCCCCccccchhhhh---hhhccccccCCC-ccccccchhhhhhhhcCCCC
Q 003854 596 ICYVQFPQRFDGIDRHDRYSNRNVVFF---DINMKGLDGIQG-PIYVGTGCVFRRQALYGYDA 654 (791)
Q Consensus 596 vafVQtPQ~F~Nid~~D~~~n~n~vFf---dii~~grDG~qg-p~y~GTGcv~RR~AL~G~~P 654 (791)
+++|++...+.+.+. .......|+ ..........+. ....|++.++||+++.|++.
T Consensus 139 ~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~~~ 198 (251)
T cd06439 139 VGAVSGELVIVDGGG---SGSGEGLYWKYENWLKRAESRLGSTVGANGAIYAIRRELFRPLPA 198 (251)
T ss_pred ccEEEeEEEecCCcc---cchhHHHHHHHHHHHHHHHHhcCCeeeecchHHHhHHHHhcCCCc
Confidence 788888776654432 111111111 111111111112 23455555689999986643
No 32
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.14 E-value=3e-10 Score=110.69 Aligned_cols=137 Identities=18% Similarity=0.196 Sum_probs=101.9
Q ss_pred cceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCccc
Q 003854 360 AKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEW 439 (791)
Q Consensus 360 P~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~ 439 (791)
|.|.|+||++ +|... +..+|-|+++.+||. +.++|.|||.+.-|.+.+.
T Consensus 1 p~vsviip~~---n~~~~-l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~------------------------- 49 (196)
T cd02520 1 PGVSILKPLC---GVDPN-LYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVR------------------------- 49 (196)
T ss_pred CCeEEEEecC---CCCcc-HHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHH-------------------------
Confidence 6799999999 88765 689999999999996 8999999999874433221
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCCc
Q 003854 440 YFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVR 519 (791)
Q Consensus 440 YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~ 519 (791)
++..+ ||.+
T Consensus 50 ------------------------------------~~~~~------------------------~~~~----------- 58 (196)
T cd02520 50 ------------------------------------KLIAK------------------------YPNV----------- 58 (196)
T ss_pred ------------------------------------HHHHH------------------------CCCC-----------
Confidence 11111 0000
Q ss_pred CCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEE
Q 003854 520 DVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYV 599 (791)
Q Consensus 520 d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafV 599 (791)
.+.|+...++.| ...|++|||.+++. +.++||+++|+|. +..|++|.+++-.|.+|. +++|
T Consensus 59 --------~~~~~~~~~~~g--~~~~~~~~n~g~~~----a~~d~i~~~D~D~-~~~~~~l~~l~~~~~~~~----~~~v 119 (196)
T cd02520 59 --------DARLLIGGEKVG--INPKVNNLIKGYEE----ARYDILVISDSDI-SVPPDYLRRMVAPLMDPG----VGLV 119 (196)
T ss_pred --------cEEEEecCCcCC--CCHhHHHHHHHHHh----CCCCEEEEECCCc-eEChhHHHHHHHHhhCCC----CCeE
Confidence 133343333222 23689999999987 6799999999999 589999999999887764 6788
Q ss_pred ecCccccCCCCCCccccchhhhhhhhccccccCCCccccccchhhhhhhhc
Q 003854 600 QFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALY 650 (791)
Q Consensus 600 QtPQ~F~Nid~~D~~~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL~ 650 (791)
+.. +..|+++++||+++.
T Consensus 120 ~~~---------------------------------~~~g~~~~~r~~~~~ 137 (196)
T cd02520 120 TCL---------------------------------CAFGKSMALRREVLD 137 (196)
T ss_pred Eee---------------------------------cccCceeeeEHHHHH
Confidence 864 677899999999993
No 33
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.12 E-value=4e-10 Score=110.83 Aligned_cols=98 Identities=20% Similarity=0.213 Sum_probs=68.5
Q ss_pred ccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCccccchhhhh
Q 003854 543 HKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFF 622 (791)
Q Consensus 543 h~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n~n~vFf 622 (791)
..|++|+|.+++. +.++||+++|+|. ++.+++|++++-.|.++ +++.|+..+.+++.+. ..+......++
T Consensus 63 ~g~~~a~n~g~~~----a~~d~v~~lD~D~-~~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~~-~~~~~~~~~~~ 132 (235)
T cd06434 63 PGKRRALAEGIRH----VTTDIVVLLDSDT-VWPPNALPEMLKPFEDP----KVGGVGTNQRILRPRD-SKWSFLAAEYL 132 (235)
T ss_pred CChHHHHHHHHHH----hCCCEEEEECCCc-eeChhHHHHHHHhccCC----CEeEEcCceEeecCcc-cHHHHHHHHHH
Confidence 4699999999987 5799999999999 59999999999999876 4999999998877642 11111111121
Q ss_pred hh----hccccccCCC-ccccccchhhhhhhhc
Q 003854 623 DI----NMKGLDGIQG-PIYVGTGCVFRRQALY 650 (791)
Q Consensus 623 di----i~~grDG~qg-p~y~GTGcv~RR~AL~ 650 (791)
.. ........++ ....|...++||++|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~ 165 (235)
T cd06434 133 ERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILK 165 (235)
T ss_pred HHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHh
Confidence 11 1122222233 3456778899999994
No 34
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.02 E-value=4.7e-10 Score=114.06 Aligned_cols=87 Identities=18% Similarity=0.067 Sum_probs=58.0
Q ss_pred CCCCEEEEecCCCCCChHHHHHHhhcccc-cCCCCcceEEEecCccccCCCCCCccccchhhhh---hhh-ccccccCCC
Q 003854 560 SNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFF---DIN-MKGLDGIQG 634 (791)
Q Consensus 560 tngpfILnlDcD~yinnp~~Lr~amcffl-Dp~~g~~vafVQtPQ~F~Nid~~D~~~n~n~vFf---dii-~~grDG~qg 634 (791)
++++||+++|+|- +..+++|++++-+|. || +++.||..+...|...+-. ..-+.+-| ..+ ......++.
T Consensus 72 a~~e~i~~~DaD~-~~~~~~l~~l~~~~~~~p----~vg~v~g~~~~~~~~~~~~-~~~q~~ey~~~~~~~~~~~s~~g~ 145 (244)
T cd04190 72 DDPEFILLVDADT-KFDPDSIVQLYKAMDKDP----EIGGVCGEIHPMGKKQGPL-VMYQVFEYAISHWLDKAFESVFGF 145 (244)
T ss_pred CCCCEEEEECCCC-cCCHhHHHHHHHHHHhCC----CEEEEEeeeEEcCCcchhH-HHhHheehhhhhhhcccHHHcCCc
Confidence 6899999999999 589999999998884 76 4889999887766532211 11111111 111 122233333
Q ss_pred -ccccccchhhhhhhhcCC
Q 003854 635 -PIYVGTGCVFRRQALYGY 652 (791)
Q Consensus 635 -p~y~GTGcv~RR~AL~G~ 652 (791)
.+..|++.+|||+||...
T Consensus 146 ~~~~~G~~~~~R~~~l~~~ 164 (244)
T cd04190 146 VTCLPGCFSMYRIEALKGD 164 (244)
T ss_pred eEECCCceEEEEehhhcCC
Confidence 457799999999999653
No 35
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.02 E-value=1.5e-10 Score=93.70 Aligned_cols=48 Identities=35% Similarity=1.043 Sum_probs=30.2
Q ss_pred cccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 39 CQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
|.+|.+++ +++|..|.+| +|+|.|||.||...++++++.||+||++|+
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 67899997 8999999999 999999999999988888899999999996
No 36
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=98.99 E-value=3e-09 Score=124.96 Aligned_cols=101 Identities=16% Similarity=0.271 Sum_probs=70.8
Q ss_pred ccchhhhhHHHHHh---ccCCCCCE--EEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCcc-ccCCCCCC---c
Q 003854 543 HKKAGAMNALVRVS---AVLSNAPY--LLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQR-FDGIDRHD---R 613 (791)
Q Consensus 543 h~KAGalN~lLrvS---a~ltngpf--ILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~-F~Nid~~D---~ 613 (791)
..||.|||.++... .-.+.+.| |+++|||- +++|++|+. |-|+++.. -+||.|=. ..|...+- .
T Consensus 140 ~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd-~~~P~~L~~-~~~~~~~~-----~~iQ~pV~~~~~~~~~~l~~~ 212 (703)
T PRK15489 140 TCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSED-VLHPLELKY-FNYLLPRK-----DLVQLPVLSLERKWYEWVAGT 212 (703)
T ss_pred CCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCC-CCChhHHHH-HHhhcCCc-----ceeeeeeccCCCccccHHHHH
Confidence 47999999999863 11234555 99999999 699999975 46666431 37998711 11111111 2
Q ss_pred cccchhhhhhhhccccccCCCcc-ccccchhhhhhhhc
Q 003854 614 YSNRNVVFFDINMKGLDGIQGPI-YVGTGCVFRRQALY 650 (791)
Q Consensus 614 ~~n~n~vFfdii~~grDG~qgp~-y~GTGcv~RR~AL~ 650 (791)
|..+-...|...++++..+++++ ..|||+.|||+||.
T Consensus 213 ~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~ 250 (703)
T PRK15489 213 YMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALL 250 (703)
T ss_pred HHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHH
Confidence 44555666788899999998877 68899999999973
No 37
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=98.97 E-value=5.4e-09 Score=113.95 Aligned_cols=133 Identities=22% Similarity=0.192 Sum_probs=92.6
Q ss_pred CCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCC
Q 003854 356 PSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPR 435 (791)
Q Consensus 356 ~~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepR 435 (791)
+...|.|.|+|+++ ||. ..+..++-|+++.+||. .+.|+|.|||.++-|.+-+.+
T Consensus 36 ~~~~p~VSVIIpa~---Ne~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~-------------------- 90 (384)
T TIGR03469 36 PEAWPAVVAVVPAR---NEA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA-------------------- 90 (384)
T ss_pred CCCCCCEEEEEecC---CcH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH--------------------
Confidence 35789999999999 887 66789999999999995 589999999988754332211
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccC
Q 003854 436 APEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 515 (791)
Q Consensus 436 aPe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~ 515 (791)
+.++. |.
T Consensus 91 -----------------------------------------~~~~~---~~----------------------------- 97 (384)
T TIGR03469 91 -----------------------------------------AARAY---GR----------------------------- 97 (384)
T ss_pred -----------------------------------------HHHhc---CC-----------------------------
Confidence 11000 00
Q ss_pred CCCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCC-CCCEEEEecCCCCCChHHHHHHhhcccccCCCCc
Q 003854 516 SGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLS-NAPYLLNVDCDHYINNSKALREAMCFMMDPQSGK 594 (791)
Q Consensus 516 ~g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~lt-ngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~ 594 (791)
-+++.++..+.+|. .-..|+.|+|.+++.+.... .+++|+.+|+|. ++.|++|++++-.+.++.
T Consensus 98 ----------~~~i~vi~~~~~~~-g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~-~~~p~~l~~lv~~~~~~~--- 162 (384)
T TIGR03469 98 ----------GDRLTVVSGQPLPP-GWSGKLWAVSQGIAAARTLAPPADYLLLTDADI-AHGPDNLARLVARARAEG--- 162 (384)
T ss_pred ----------CCcEEEecCCCCCC-CCcchHHHHHHHHHHHhccCCCCCEEEEECCCC-CCChhHHHHHHHHHHhCC---
Confidence 01244444333222 23578999999999743221 289999999999 589999999999998653
Q ss_pred ceEEEecC
Q 003854 595 KICYVQFP 602 (791)
Q Consensus 595 ~vafVQtP 602 (791)
+++|...
T Consensus 163 -~~~vs~~ 169 (384)
T TIGR03469 163 -LDLVSLM 169 (384)
T ss_pred -CCEEEec
Confidence 4455543
No 38
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.93 E-value=1.2e-08 Score=91.83 Aligned_cols=111 Identities=24% Similarity=0.344 Sum_probs=67.4
Q ss_pred EEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcc-cccCCCCcceEEEecCccccC
Q 003854 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCF-MMDPQSGKKICYVQFPQRFDG 607 (791)
Q Consensus 529 lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcf-flDp~~g~~vafVQtPQ~F~N 607 (791)
++|+..++. ..|+.|+|.+++. +++++|+++|+|.+ ..+++|.+.+.. +.++ ++++|...+...+
T Consensus 55 ~~~~~~~~~-----~g~~~~~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~~~~~~ 120 (180)
T cd06423 55 VLVVRDKEN-----GGKAGALNAGLRH----AKGDIVVVLDADTI-LEPDALKRLVVPFFADP----KVGAVQGRVRVRN 120 (180)
T ss_pred EEEEEeccc-----CCchHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHhccCC----CeeeEeeeEEEec
Confidence 445555543 3599999999997 48999999999995 789999999444 4454 3566665544433
Q ss_pred CCCCCccccch-hhh---hhhhccccccCC-Cccccccchhhhhhhh---cCCCC
Q 003854 608 IDRHDRYSNRN-VVF---FDINMKGLDGIQ-GPIYVGTGCVFRRQAL---YGYDA 654 (791)
Q Consensus 608 id~~D~~~n~n-~vF---fdii~~grDG~q-gp~y~GTGcv~RR~AL---~G~~P 654 (791)
... ..+.... ..| +.....+..... -..+.|++.++||++| .||++
T Consensus 121 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ggf~~ 174 (180)
T cd06423 121 GSE-NLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRREALREVGGWDE 174 (180)
T ss_pred CcC-cceeccchheecceeeeeeehhheecceeecCchHHHHHHHHHHHhCCccc
Confidence 321 1111111 111 111112211122 2568999999999999 34554
No 39
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.91 E-value=1.7e-08 Score=96.88 Aligned_cols=165 Identities=19% Similarity=0.238 Sum_probs=107.2
Q ss_pred cceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCccc
Q 003854 360 AKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEW 439 (791)
Q Consensus 360 P~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~ 439 (791)
|.|.|+|+|+ +|.+..+.+|+.|+++..||. +.|+|.|||...-+...+.+
T Consensus 1 p~vsiii~~~---n~~~~~l~~~l~sl~~q~~~~--~eiivvd~gs~d~~~~~~~~------------------------ 51 (202)
T cd04184 1 PLISIVMPVY---NTPEKYLREAIESVRAQTYPN--WELCIADDASTDPEVKRVLK------------------------ 51 (202)
T ss_pred CeEEEEEecc---cCcHHHHHHHHHHHHhCcCCC--eEEEEEeCCCCChHHHHHHH------------------------
Confidence 6799999999 888788999999999999985 78999999987632222111
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCCc
Q 003854 440 YFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVR 519 (791)
Q Consensus 440 YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~ 519 (791)
.+..+
T Consensus 52 ------------------------------------~~~~~--------------------------------------- 56 (202)
T cd04184 52 ------------------------------------KYAAQ--------------------------------------- 56 (202)
T ss_pred ------------------------------------HHHhc---------------------------------------
Confidence 01100
Q ss_pred CCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhccc-ccCCCCcceEE
Q 003854 520 DVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM-MDPQSGKKICY 598 (791)
Q Consensus 520 d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcff-lDp~~g~~vaf 598 (791)
.+++.++..+.+ ..++.|+|.+++. +.++||+++|+|. ++.|++|.+++-.| .+|+ +++
T Consensus 57 ------~~~~~~~~~~~~-----~g~~~a~n~g~~~----a~~d~i~~ld~D~-~~~~~~l~~~~~~~~~~~~----~~~ 116 (202)
T cd04184 57 ------DPRIKVVFREEN-----GGISAATNSALEL----ATGEFVALLDHDD-ELAPHALYEVVKALNEHPD----ADL 116 (202)
T ss_pred ------CCCEEEEEcccC-----CCHHHHHHHHHHh----hcCCEEEEECCCC-cCChHHHHHHHHHHHhCCC----CCE
Confidence 012444444432 3579999999997 5689999999999 58999999999888 5654 667
Q ss_pred EecCccccCCCCCCccccchhhhhhhhccccccCCCccccccchhhhhhhh---cCCCC
Q 003854 599 VQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL---YGYDA 654 (791)
Q Consensus 599 VQtPQ~F~Nid~~D~~~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL---~G~~P 654 (791)
|++...+...+.. ... ..+.... ..+.+....+.|.+.++||+++ .||++
T Consensus 117 v~~~~~~~~~~~~-~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~iggf~~ 169 (202)
T cd04184 117 IYSDEDKIDEGGK-RSE----PFFKPDW-SPDLLLSQNYIGHLLVYRRSLVRQVGGFRE 169 (202)
T ss_pred EEccHHhccCCCC-Eec----cccCCCC-CHHHhhhcCCccceEeEEHHHHHHhCCCCc
Confidence 7776554331110 000 0000000 0111222245677788999999 46654
No 40
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.87 E-value=3.1e-08 Score=95.30 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=67.4
Q ss_pred EEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc-cCCCCcceEEEecCccccC
Q 003854 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKKICYVQFPQRFDG 607 (791)
Q Consensus 529 lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl-Dp~~g~~vafVQtPQ~F~N 607 (791)
+.|+.+++. ..+++|+|.+++. +.++||++||+|. +..|++|.+++.+|. +| ++++|.......+
T Consensus 57 i~~i~~~~n-----~G~~~a~N~g~~~----a~gd~i~~lD~Dd-~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 122 (201)
T cd04195 57 LKVVPLEKN-----RGLGKALNEGLKH----CTYDWVARMDTDD-ISLPDRFEKQLDFIEKNP----EIDIVGGGVLEFD 122 (201)
T ss_pred eEEEEcCcc-----ccHHHHHHHHHHh----cCCCEEEEeCCcc-ccCcHHHHHHHHHHHhCC----CeEEEcccEEEEC
Confidence 555666553 3589999999997 5799999999999 589999999999986 33 5778888766554
Q ss_pred CCCCCcccc----chhhhhhhhccccccCCCccccccchhhhhhhh
Q 003854 608 IDRHDRYSN----RNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL 649 (791)
Q Consensus 608 id~~D~~~n----~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL 649 (791)
.+....... ....++.... ....+.|.+.++||+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~rr~~~ 162 (201)
T cd04195 123 SDGNDIGKRRLPTSHDDILKFAR------RRSPFNHPTVMFRKSKV 162 (201)
T ss_pred CCCCeeccccCCCCHHHHHHHhc------cCCCCCChHHhhhHHHH
Confidence 433221111 1111111111 12234667789999998
No 41
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.87 E-value=3.3e-09 Score=96.08 Aligned_cols=111 Identities=15% Similarity=0.127 Sum_probs=77.3
Q ss_pred eEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccC
Q 003854 528 SLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDG 607 (791)
Q Consensus 528 ~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~N 607 (791)
.+.|+.+++. . .+++|+|.+++. +.++||+.+|+|.+ ..+++|.+.+-++.+.. ..+.+...+....+
T Consensus 54 ~i~~i~~~~n----~-g~~~~~n~~~~~----a~~~~i~~ld~D~~-~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~ 121 (169)
T PF00535_consen 54 NIRYIRNPEN----L-GFSAARNRGIKH----AKGEYILFLDDDDI-ISPDWLEELVEALEKNP--PDVVIGSVIYIDDD 121 (169)
T ss_dssp TEEEEEHCCC----S-HHHHHHHHHHHH------SSEEEEEETTEE-E-TTHHHHHHHHHHHCT--TEEEEEEEEEEECT
T ss_pred cccccccccc----c-cccccccccccc----cceeEEEEeCCCce-EcHHHHHHHHHHHHhCC--CcEEEEEEEEecCC
Confidence 3888888863 2 799999999998 67889999999995 78889999999998742 23444444444433
Q ss_pred CCCCCccc--cchhhhhhhhccccccCCCccccccchhhhhhhhc
Q 003854 608 IDRHDRYS--NRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALY 650 (791)
Q Consensus 608 id~~D~~~--n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL~ 650 (791)
........ .....++.............+++|.++++||++|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~ 166 (169)
T PF00535_consen 122 NRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFE 166 (169)
T ss_dssp TETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHH
T ss_pred ccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHH
Confidence 32222111 12344555566666777788999999999999983
No 42
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.87 E-value=1.6e-08 Score=97.17 Aligned_cols=110 Identities=14% Similarity=0.124 Sum_probs=67.7
Q ss_pred EEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCC
Q 003854 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGI 608 (791)
Q Consensus 529 lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Ni 608 (791)
++++..+++ +.+++|+|.++.. ++++||+++|.|- +..|+.|.+.+-+++.. ...++|.+...+.+.
T Consensus 56 ~~~~~~~~~-----~G~~~~~n~g~~~----~~g~~v~~ld~Dd-~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~ 122 (214)
T cd04196 56 IILIRNGKN-----LGVARNFESLLQA----ADGDYVFFCDQDD-IWLPDKLERLLKAFLKD---DKPLLVYSDLELVDE 122 (214)
T ss_pred EEEEeCCCC-----ccHHHHHHHHHHh----CCCCEEEEECCCc-ccChhHHHHHHHHHhcC---CCceEEecCcEEECC
Confidence 444444443 4689999999886 6799999999999 48899999999985432 246778887655433
Q ss_pred CCCCccccchhhhhhh--hccccccCCCccccccchhhhhhhhcCC
Q 003854 609 DRHDRYSNRNVVFFDI--NMKGLDGIQGPIYVGTGCVFRRQALYGY 652 (791)
Q Consensus 609 d~~D~~~n~n~vFfdi--i~~grDG~qgp~y~GTGcv~RR~AL~G~ 652 (791)
+..- ........... ....+.-.....+.|+++++||+++...
T Consensus 123 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 167 (214)
T cd04196 123 NGNP-IGESFFEYQKIKPGTSFNNLLFQNVVTGCTMAFNRELLELA 167 (214)
T ss_pred CCCC-cccccccccccCCccCHHHHHHhCccCCceeeEEHHHHHhh
Confidence 2211 11000000000 0111111223456899999999999543
No 43
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=98.81 E-value=3.4e-08 Score=97.15 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=86.2
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCccccc
Q 003854 362 VDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYF 441 (791)
Q Consensus 362 VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~YF 441 (791)
|.|+|+|+ +|+. .+.+|+-++++.+||..++.++|.|||.+.-|.+-
T Consensus 2 ~sIiip~~---n~~~-~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~----------------------------- 48 (249)
T cd02525 2 VSIIIPVR---NEEK-YIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREI----------------------------- 48 (249)
T ss_pred EEEEEEcC---Cchh-hHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHH-----------------------------
Confidence 78999999 8864 57999999999999977899999999987632111
Q ss_pred ccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCCcCC
Q 003854 442 SQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDV 521 (791)
Q Consensus 442 s~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~d~ 521 (791)
++.+.+
T Consensus 49 --------------------------------~~~~~~------------------------------------------ 54 (249)
T cd02525 49 --------------------------------VQEYAA------------------------------------------ 54 (249)
T ss_pred --------------------------------HHHHHh------------------------------------------
Confidence 111110
Q ss_pred CCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEec
Q 003854 522 EGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQF 601 (791)
Q Consensus 522 ~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQt 601 (791)
..|.+.++..+. ..+++|+|.+++. ++++||+++|+|. ++.|++|.+++-++.++. ...|+.
T Consensus 55 ---~~~~v~~i~~~~------~~~~~a~N~g~~~----a~~d~v~~lD~D~-~~~~~~l~~~~~~~~~~~----~~~v~~ 116 (249)
T cd02525 55 ---KDPRIRLIDNPK------RIQSAGLNIGIRN----SRGDIIIRVDAHA-VYPKDYILELVEALKRTG----ADNVGG 116 (249)
T ss_pred ---cCCeEEEEeCCC------CCchHHHHHHHHH----hCCCEEEEECCCc-cCCHHHHHHHHHHHhcCC----CCEEec
Confidence 013355664332 3588999999997 5799999999999 589999999998887653 445555
Q ss_pred Cc
Q 003854 602 PQ 603 (791)
Q Consensus 602 PQ 603 (791)
+-
T Consensus 117 ~~ 118 (249)
T cd02525 117 PM 118 (249)
T ss_pred ce
Confidence 43
No 44
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.69 E-value=1.7e-07 Score=88.44 Aligned_cols=93 Identities=14% Similarity=0.002 Sum_probs=61.1
Q ss_pred cchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhccc-ccCCCCcceEEEecCccccCCCCCCccccchhhhh
Q 003854 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM-MDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFF 622 (791)
Q Consensus 544 ~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcff-lDp~~g~~vafVQtPQ~F~Nid~~D~~~n~n~vFf 622 (791)
.+++|+|.+++. +.++||+++|+|- +..++.+.+.+-.+ .++ +..+|.....+.+.+........
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~-~~~~~~~~~~~~~~~~~~----~~~~v~g~~~~~~~~~~~~~~~~----- 127 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDD-TLLPGALLAVVAAFAEHP----EVDVVYGDVLLVDENGRVIGRRR----- 127 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCc-ccCchHHHHHHHHHHhCC----CccEEEeeeEEEcCCCCcccCCC-----
Confidence 589999999997 6799999999999 48889999988444 454 35677776655443322211100
Q ss_pred hhhccccccCCCccccccchhhhhhhhc
Q 003854 623 DINMKGLDGIQGPIYVGTGCVFRRQALY 650 (791)
Q Consensus 623 dii~~grDG~qgp~y~GTGcv~RR~AL~ 650 (791)
......+.-....+.+|++.++||+++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (202)
T cd06433 128 PPPFLDKFLLYGMPICHQATFFRRSLFE 155 (202)
T ss_pred CcchhhhHHhhcCcccCcceEEEHHHHH
Confidence 1111112223345678888999999993
No 45
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=98.61 E-value=4.4e-07 Score=85.82 Aligned_cols=79 Identities=18% Similarity=0.316 Sum_probs=56.7
Q ss_pred cchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCccccchhhhhh
Q 003854 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFD 623 (791)
Q Consensus 544 ~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n~n~vFfd 623 (791)
.+++++|.+++. +.++||+++|+|- ++.+++|.+.+-++ ++ .+ +|..++...+.+...
T Consensus 66 ~~~~~~n~g~~~----a~g~~i~~lD~D~-~~~~~~l~~~~~~~-~~----~~-~v~g~~~~~~~~~~~----------- 123 (182)
T cd06420 66 RKAKIRNKAIAA----AKGDYLIFIDGDC-IPHPDFIADHIELA-EP----GV-FLSGSRVLLNEKLTE----------- 123 (182)
T ss_pred hHHHHHHHHHHH----hcCCEEEEEcCCc-ccCHHHHHHHHHHh-CC----Cc-EEecceeecccccce-----------
Confidence 689999999997 6799999999999 58999999999887 43 23 444554433322111
Q ss_pred hhccccccCCCccccccchhhhhhhh---cCCCCC
Q 003854 624 INMKGLDGIQGPIYVGTGCVFRRQAL---YGYDAP 655 (791)
Q Consensus 624 ii~~grDG~qgp~y~GTGcv~RR~AL---~G~~Pp 655 (791)
..+.|++++++|+++ .||++.
T Consensus 124 -----------~~~~~~~~~~~r~~~~~~ggf~~~ 147 (182)
T cd06420 124 -----------RGIRGCNMSFWKKDLLAVNGFDEE 147 (182)
T ss_pred -----------eEeccceEEEEHHHHHHhCCCCcc
Confidence 345677788888877 476653
No 46
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.60 E-value=5.5e-07 Score=91.10 Aligned_cols=109 Identities=12% Similarity=0.021 Sum_probs=64.1
Q ss_pred EEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCC
Q 003854 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGI 608 (791)
Q Consensus 529 lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Ni 608 (791)
+.++.+.+. ..|++|+|++++. +.++||+.+|+|. ..+|++|.+++-.+.+.. ..+|... +|.+.
T Consensus 70 v~~~~~~~n-----~G~~~a~n~g~~~----a~g~~i~~lD~D~-~~~~~~l~~l~~~~~~~~----~~~v~g~-r~~~~ 134 (243)
T PLN02726 70 ILLRPRPGK-----LGLGTAYIHGLKH----ASGDFVVIMDADL-SHHPKYLPSFIKKQRETG----ADIVTGT-RYVKG 134 (243)
T ss_pred EEEEecCCC-----CCHHHHHHHHHHH----cCCCEEEEEcCCC-CCCHHHHHHHHHHHHhcC----CcEEEEc-cccCC
Confidence 445554442 2489999999987 6799999999999 489999999998876542 4456554 33221
Q ss_pred CCCCcc---ccchhhhhhhhccccccCCCccccccchhhhhhhhcCC
Q 003854 609 DRHDRY---SNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGY 652 (791)
Q Consensus 609 d~~D~~---~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL~G~ 652 (791)
.....+ -.....++.....-.-+.+..-..|...++||+++.-+
T Consensus 135 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~g~~~~~rr~~~~~i 181 (243)
T PLN02726 135 GGVHGWDLRRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKRSALEDL 181 (243)
T ss_pred CCcCCccHHHHHHHHHHHHHHHHHhCCCCCcCCCcccceeHHHHHHH
Confidence 110110 01111112222222222333345566668899998543
No 47
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.57 E-value=3.1e-07 Score=89.59 Aligned_cols=100 Identities=11% Similarity=0.041 Sum_probs=60.4
Q ss_pred ccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCccccchhh--
Q 003854 543 HKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVV-- 620 (791)
Q Consensus 543 h~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n~n~v-- 620 (791)
..+++|+|.+++. +.++||+.+|+|. +..|++|...+..+.++. ..+|..+..... .....+......
T Consensus 64 ~G~~~a~n~g~~~----a~gd~i~~lD~D~-~~~~~~l~~l~~~~~~~~----~~~v~g~~~~~~-~~~~~~~~~~~~~~ 133 (224)
T cd06442 64 RGLGSAYIEGFKA----ARGDVIVVMDADL-SHPPEYIPELLEAQLEGG----ADLVIGSRYVEG-GGVEGWGLKRKLIS 133 (224)
T ss_pred CChHHHHHHHHHH----cCCCEEEEEECCC-CCCHHHHHHHHHHHhcCC----CCEEEEeeeecC-CccCCCcHHHHHHH
Confidence 3589999999997 5689999999999 589999999999987653 345655533222 111111111000
Q ss_pred -hhhhhccccccCCCccccccchhhhhhhhcCC
Q 003854 621 -FFDINMKGLDGIQGPIYVGTGCVFRRQALYGY 652 (791)
Q Consensus 621 -Ffdii~~grDG~qgp~y~GTGcv~RR~AL~G~ 652 (791)
.......-.-+.+.....|+..++||++|..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i 166 (224)
T cd06442 134 RGANLLARLLLGRKVSDPTSGFRAYRREVLEKL 166 (224)
T ss_pred HHHHHHHHHHcCCCCCCCCCccchhhHHHHHHH
Confidence 00111111112334456666678999999543
No 48
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.56 E-value=2.8e-07 Score=87.13 Aligned_cols=109 Identities=13% Similarity=0.081 Sum_probs=66.5
Q ss_pred EEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCC
Q 003854 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGI 608 (791)
Q Consensus 529 lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Ni 608 (791)
+.++-.+++. .|++|+|.+++. +.+++|+++|+|- +..|++|.+.+-++... +..+|+.+..+.+.
T Consensus 56 ~~~~~~~~n~-----G~~~a~n~g~~~----a~gd~i~~lD~D~-~~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~~ 121 (185)
T cd04179 56 VRVIRLSRNF-----GKGAAVRAGFKA----ARGDIVVTMDADL-QHPPEDIPKLLEKLLEG----GADVVIGSRFVRGG 121 (185)
T ss_pred eEEEEccCCC-----CccHHHHHHHHH----hcCCEEEEEeCCC-CCCHHHHHHHHHHHhcc----CCcEEEEEeecCCC
Confidence 3445555543 499999999987 5689999999998 47999999999986654 25577777665543
Q ss_pred CCCCc-cccc-hhhhhhhhccccccCCCccccccchhhhhhhhcCC
Q 003854 609 DRHDR-YSNR-NVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGY 652 (791)
Q Consensus 609 d~~D~-~~n~-n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL~G~ 652 (791)
..... +... ...++ .....+.+.......|...++||++|.-+
T Consensus 122 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~i 166 (185)
T cd04179 122 GAGMPLLRRLGSRLFN-FLIRLLLGVRISDTQSGFRLFRREVLEAL 166 (185)
T ss_pred cccchHHHHHHHHHHH-HHHHHHcCCCCcCCCCceeeeHHHHHHHH
Confidence 21011 1110 11111 11111122333344555568999999543
No 49
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.55 E-value=5.1e-07 Score=82.77 Aligned_cols=66 Identities=18% Similarity=0.119 Sum_probs=54.3
Q ss_pred ccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCccccchhhhh
Q 003854 543 HKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFF 622 (791)
Q Consensus 543 h~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n~n~vFf 622 (791)
..+++|+|.+++. ..+++|+.+|+|.+ +.+++|.+.+-.+.+. +++++|...
T Consensus 60 ~g~~~a~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~---~~~~~~~~~-------------------- 111 (166)
T cd04186 60 LGFGAGNNQGIRE----AKGDYVLLLNPDTV-VEPGALLELLDAAEQD---PDVGIVGPK-------------------- 111 (166)
T ss_pred cChHHHhhHHHhh----CCCCEEEEECCCcE-ECccHHHHHHHHHHhC---CCceEEEcc--------------------
Confidence 3689999999997 47999999999995 8899999998766532 256777665
Q ss_pred hhhccccccCCCccccccchhhhhhhhc
Q 003854 623 DINMKGLDGIQGPIYVGTGCVFRRQALY 650 (791)
Q Consensus 623 dii~~grDG~qgp~y~GTGcv~RR~AL~ 650 (791)
+.|.+.++||+++.
T Consensus 112 --------------~~~~~~~~~~~~~~ 125 (166)
T cd04186 112 --------------VSGAFLLVRREVFE 125 (166)
T ss_pred --------------CceeeEeeeHHHHH
Confidence 88999999999994
No 50
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=98.49 E-value=1.1e-06 Score=91.85 Aligned_cols=109 Identities=18% Similarity=0.102 Sum_probs=83.0
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCccccccc
Q 003854 364 IFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQ 443 (791)
Q Consensus 364 VFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~YFs~ 443 (791)
|+|+|+ +|++..+.+||.|+++..||.....|+|.|||.+.-|.+.+.+
T Consensus 2 IIIp~~---N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~---------------------------- 50 (299)
T cd02510 2 VIIIFH---NEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE---------------------------- 50 (299)
T ss_pred EEEEEe---cCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH----------------------------
Confidence 789999 9998999999999999999876679999999988744332211
Q ss_pred ccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCCcCCCC
Q 003854 444 KIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEG 523 (791)
Q Consensus 444 ~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~d~~g 523 (791)
... .
T Consensus 51 --------------------------------~~~-~------------------------------------------- 54 (299)
T cd02510 51 --------------------------------EYY-K------------------------------------------- 54 (299)
T ss_pred --------------------------------HHH-h-------------------------------------------
Confidence 000 0
Q ss_pred CCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhccccc
Q 003854 524 NELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD 589 (791)
Q Consensus 524 ~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflD 589 (791)
...|.+.++..+++ ...+.|.|.+++. +.|+||+.||+|.. +.+++|.+.+-.+..
T Consensus 55 ~~~~~v~vi~~~~n-----~G~~~a~N~g~~~----A~gd~i~fLD~D~~-~~~~wL~~ll~~l~~ 110 (299)
T cd02510 55 KYLPKVKVLRLKKR-----EGLIRARIAGARA----ATGDVLVFLDSHCE-VNVGWLEPLLARIAE 110 (299)
T ss_pred hcCCcEEEEEcCCC-----CCHHHHHHHHHHH----ccCCEEEEEeCCcc-cCccHHHHHHHHHHh
Confidence 01133556655542 3588999999997 67999999999995 799999999988864
No 51
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.48 E-value=1.6e-06 Score=84.52 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=56.1
Q ss_pred cchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCccccchhhhhh
Q 003854 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFD 623 (791)
Q Consensus 544 ~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n~n~vFfd 623 (791)
.+++|+|.++.. ..+++|+++|.|-+ +.+++|.+++-.+.++. ...+.....+.+......+ +.
T Consensus 59 g~~~a~n~g~~~----a~~~~i~~~D~D~~-~~~~~l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~-------~~ 122 (221)
T cd02522 59 GRARQMNAGAAA----ARGDWLLFLHADTR-LPPDWDAAIIETLRADG----AVAGAFRLRFDDPGPRLRL-------LE 122 (221)
T ss_pred CHHHHHHHHHHh----ccCCEEEEEcCCCC-CChhHHHHHHHHhhcCC----cEEEEEEeeecCCccchhh-------hh
Confidence 478999999986 56999999999995 78999999865555432 3333333333332111110 11
Q ss_pred hhccccccCCCccccccchhhhhhhh---cCCCC
Q 003854 624 INMKGLDGIQGPIYVGTGCVFRRQAL---YGYDA 654 (791)
Q Consensus 624 ii~~grDG~qgp~y~GTGcv~RR~AL---~G~~P 654 (791)
.....+....+..+.+.|.++||+++ .||++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~fd~ 156 (221)
T cd02522 123 LGANLRSRLFGLPYGDQGLFIRRELFEELGGFPE 156 (221)
T ss_pred hcccceecccCCCcCCceEEEEHHHHHHhCCCCc
Confidence 11111222223345566788899988 35544
No 52
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.36 E-value=3.4e-06 Score=81.64 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=52.7
Q ss_pred cchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCccccchhhhhh
Q 003854 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFD 623 (791)
Q Consensus 544 ~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n~n~vFfd 623 (791)
..+.++|.++...- ...++||+++|+|. ++.+++|++++-.+.+++ +++|. |..+..-.
T Consensus 63 g~~~~~n~~~~~a~-~~~~d~v~~ld~D~-~~~~~~l~~l~~~~~~~~----~~~~~-~~~~~~~~-------------- 121 (202)
T cd04185 63 GGAGGFYEGVRRAY-ELGYDWIWLMDDDA-IPDPDALEKLLAYADKDN----PQFLA-PLVLDPDG-------------- 121 (202)
T ss_pred chhhHHHHHHHHHh-ccCCCEEEEeCCCC-CcChHHHHHHHHHHhcCC----ceEec-ceeEcCCC--------------
Confidence 46888888887542 45789999999999 588999999999887653 55553 43433210
Q ss_pred hhccccccCCCccccccchhhhhhhhc
Q 003854 624 INMKGLDGIQGPIYVGTGCVFRRQALY 650 (791)
Q Consensus 624 ii~~grDG~qgp~y~GTGcv~RR~AL~ 650 (791)
.++|.++||+++.
T Consensus 122 --------------~~~~~~~~~~~~~ 134 (202)
T cd04185 122 --------------SFVGVLISRRVVE 134 (202)
T ss_pred --------------ceEEEEEeHHHHH
Confidence 4567899999994
No 53
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.31 E-value=2.7e-06 Score=81.22 Aligned_cols=103 Identities=13% Similarity=0.178 Sum_probs=62.5
Q ss_pred EEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCC
Q 003854 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGI 608 (791)
Q Consensus 529 lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Ni 608 (791)
+.|+..++. ..|++|+|.+++. +.+++|+.+|+|. ...+++|.+++-. +++. .++.+.... ..+
T Consensus 57 i~~i~~~~n-----~G~~~a~n~g~~~----a~~d~i~~~D~D~-~~~~~~l~~l~~~-~~~~--~~~v~g~~~--~~~- 120 (181)
T cd04187 57 VKVIRLSRN-----FGQQAALLAGLDH----ARGDAVITMDADL-QDPPELIPEMLAK-WEEG--YDVVYGVRK--NRK- 120 (181)
T ss_pred EEEEEecCC-----CCcHHHHHHHHHh----cCCCEEEEEeCCC-CCCHHHHHHHHHH-HhCC--CcEEEEEec--CCc-
Confidence 555555442 3599999999997 5689999999999 5899999999987 4432 234443322 121
Q ss_pred CC-CCccccchhhhhhhhccccccCCCccccccchhhhhhhhc
Q 003854 609 DR-HDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALY 650 (791)
Q Consensus 609 d~-~D~~~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL~ 650 (791)
+. .-++. ...|+. ......+..-+...|+..++||+++.
T Consensus 121 ~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 121 ESWLKRLT--SKLFYR-LINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred chHHHHHH--HHHHHH-HHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 11 00111 111211 11222334445677888899999993
No 54
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.29 E-value=3.7e-06 Score=83.02 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=65.1
Q ss_pred EEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhh---ccc-ccCCCCcceEEEecCcc
Q 003854 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAM---CFM-MDPQSGKKICYVQFPQR 604 (791)
Q Consensus 529 lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~am---cff-lDp~~g~~vafVQtPQ~ 604 (791)
+.++..++.. .+|+|+|.+++.+.- .+++||+.+|+|.+ ..|++|.+++ -.+ -++ +++++ .|+.
T Consensus 49 i~~i~~~~n~-----G~~~a~N~g~~~a~~-~~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~~~~----~~~~~-~~~~ 116 (237)
T cd02526 49 IELIHLGENL-----GIAKALNIGIKAALE-NGADYVLLFDQDSV-PPPDMVEKLLAYKILSDKNS----NIGAV-GPRI 116 (237)
T ss_pred EEEEECCCce-----ehHHhhhHHHHHHHh-CCCCEEEEECCCCC-cCHhHHHHHHHHHHhhccCC----CeEEE-eeeE
Confidence 5566555432 499999999997421 25699999999995 7899999985 222 233 45554 5554
Q ss_pred ccCCCCCCccccchhhh-h-hhhccccccCCCccccccchhhhhhhh---cCCCCC
Q 003854 605 FDGIDRHDRYSNRNVVF-F-DINMKGLDGIQGPIYVGTGCVFRRQAL---YGYDAP 655 (791)
Q Consensus 605 F~Nid~~D~~~n~n~vF-f-dii~~grDG~qgp~y~GTGcv~RR~AL---~G~~Pp 655 (791)
............+...+ + ........-.......|+|+++||+++ .||++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~ 172 (237)
T cd02526 117 IDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALEKVGGFDED 172 (237)
T ss_pred EcCCCCeeccceeccCccceecccccCCceEeeeeeccceEEcHHHHHHhCCCCHH
Confidence 43222111111111111 0 011111111223456789999999988 456543
No 55
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.14 E-value=1.8e-05 Score=78.22 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=35.1
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhh
Q 003854 364 IFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLT 409 (791)
Q Consensus 364 VFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lT 409 (791)
|+|+|+ |+. ..+..|+-|+++.+|| ..+.|+|.|||...-|
T Consensus 1 ViIp~y---n~~-~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t 41 (219)
T cd06913 1 IILPVH---NGE-QWLDECLESVLQQDFE-GTLELSVFNDASTDKS 41 (219)
T ss_pred CEEeec---CcH-HHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccH
Confidence 679999 664 6899999999999998 4689999999988754
No 56
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.11 E-value=1.5e-05 Score=78.24 Aligned_cols=53 Identities=17% Similarity=0.106 Sum_probs=42.0
Q ss_pred cchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccc
Q 003854 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRF 605 (791)
Q Consensus 544 ~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F 605 (791)
.|++|+|.+++. +.++||+.+|+|- ...+++|.+++-.+.+.. ..+|.....+
T Consensus 69 G~~~a~~~g~~~----a~gd~i~~ld~D~-~~~~~~l~~l~~~~~~~~----~~~v~g~r~~ 121 (211)
T cd04188 69 GKGGAVRAGMLA----ARGDYILFADADL-ATPFEELEKLEEALKTSG----YDIAIGSRAH 121 (211)
T ss_pred CcHHHHHHHHHH----hcCCEEEEEeCCC-CCCHHHHHHHHHHHhccC----CcEEEEEeec
Confidence 589999999997 5689999999999 489999999998876532 3455555443
No 57
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.02 E-value=4.1e-05 Score=82.60 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=39.7
Q ss_pred CCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhh
Q 003854 358 QLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLT 409 (791)
Q Consensus 358 ~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lT 409 (791)
..|.|-|+||+| |++ ..+..|+.|+++-.|+. +.|+|.|||.+.-|
T Consensus 4 ~~p~vSVIIP~y---N~~-~~L~~~l~Sl~~Qt~~~--~EIIiVdDgStD~t 49 (328)
T PRK10073 4 STPKLSIIIPLY---NAG-KDFRAFMESLIAQTWTA--LEIIIVNDGSTDNS 49 (328)
T ss_pred CCCeEEEEEecc---CCH-HHHHHHHHHHHhCCCCC--eEEEEEeCCCCccH
Confidence 358899999999 776 68899999999999974 88999999988743
No 58
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.00 E-value=4.6e-05 Score=80.95 Aligned_cols=109 Identities=17% Similarity=0.290 Sum_probs=81.9
Q ss_pred CCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCc
Q 003854 358 QLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAP 437 (791)
Q Consensus 358 ~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaP 437 (791)
..|.|-|+|||| |++..+ ..||.|+++-.||. +.++|.|||.+. .+.+.+
T Consensus 3 ~~p~VSVIip~y---N~~~~l-~~~l~Svl~Qt~~~--~EiIVVDDgS~~--~~~~~~---------------------- 52 (279)
T PRK10018 3 DNPLISIYMPTW---NRQQLA-IRAIKSVLRQDYSN--WEMIIVDDCSTS--WEQLQQ---------------------- 52 (279)
T ss_pred CCCEEEEEEEeC---CCHHHH-HHHHHHHHhCCCCC--eEEEEEECCCCC--HHHHHH----------------------
Confidence 468899999999 888765 68999999999985 889999999873 211111
Q ss_pred ccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCC
Q 003854 438 EWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSG 517 (791)
Q Consensus 438 e~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g 517 (791)
.+++.
T Consensus 53 ---------------------------------------~~~~~------------------------------------ 57 (279)
T PRK10018 53 ---------------------------------------YVTAL------------------------------------ 57 (279)
T ss_pred ---------------------------------------HHHHc------------------------------------
Confidence 11000
Q ss_pred CcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc
Q 003854 518 VRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM 588 (791)
Q Consensus 518 ~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl 588 (791)
.-|++.|+..++. ...+.|+|.++.. +.|+||+.+|+|-+ ..|+.|.+.+-++.
T Consensus 58 -------~~~ri~~i~~~~n-----~G~~~a~N~gi~~----a~g~~I~~lDaDD~-~~p~~l~~~~~~~~ 111 (279)
T PRK10018 58 -------NDPRITYIHNDIN-----SGACAVRNQAIML----AQGEYITGIDDDDE-WTPNRLSVFLAHKQ 111 (279)
T ss_pred -------CCCCEEEEECCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCCC-CCccHHHHHHHHHH
Confidence 0134777766543 3589999999987 68999999999995 78999998887764
No 59
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=97.97 E-value=0.00013 Score=79.07 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=35.4
Q ss_pred cchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhccccc
Q 003854 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD 589 (791)
Q Consensus 544 ~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflD 589 (791)
.|++|+|++++. +.|++|+++|+|. ..+++.+.+.+-.+.+
T Consensus 149 G~~~A~~~Gi~~----a~gd~I~~~DaD~-~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 149 GKGGAVRIGMLA----SRGKYILMVDADG-ATDIDDFDKLEDIMLK 189 (333)
T ss_pred ChHHHHHHHHHH----ccCCEEEEEeCCC-CCCHHHHHHHHHHHHH
Confidence 699999999997 5799999999999 4889998888777754
No 60
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=97.92 E-value=0.00011 Score=64.64 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=40.3
Q ss_pred ccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhccc-ccCCCCcceEEEecC
Q 003854 543 HKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM-MDPQSGKKICYVQFP 602 (791)
Q Consensus 543 h~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcff-lDp~~g~~vafVQtP 602 (791)
..+++++|.++..+ ++++++++|+|. +..++++...+-.+ .++ +..+|+++
T Consensus 63 ~g~~~~~~~~~~~~----~~d~v~~~d~D~-~~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 63 QGLAAARNAGLKAA----RGEYILFLDADD-LLLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred CChHHHHHHHHHHh----cCCEEEEECCCC-ccCccHHHHHHHHHhcCC----CceEEecc
Confidence 47999999999874 799999999999 58889888874443 343 46678776
No 61
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=97.67 E-value=0.00037 Score=72.08 Aligned_cols=110 Identities=17% Similarity=0.271 Sum_probs=65.6
Q ss_pred EEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCC
Q 003854 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGI 608 (791)
Q Consensus 529 lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Ni 608 (791)
+.|+.-++.- ..|||+|..++.. .-.+++||+.||.|-+ +.+++|.+.+.++... +.++++|. |..+. .
T Consensus 47 i~~i~~~~N~-----G~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~~-~ 115 (281)
T TIGR01556 47 IALIHLGDNQ-----GIAGAQNQGLDAS-FRRGVQGVLLLDQDSR-PGNAFLAAQWKLLSAE--NGQACALG-PRFFD-R 115 (281)
T ss_pred eEEEECCCCc-----chHHHHHHHHHHH-HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHhc--CCceEEEC-CeEEc-C
Confidence 5666554432 5899999999863 1236899999999995 7899999999887642 22577776 44333 2
Q ss_pred CCCCcccc--chhhhhhhh-cccccc-CCCccccccchhhhhhhh
Q 003854 609 DRHDRYSN--RNVVFFDIN-MKGLDG-IQGPIYVGTGCVFRRQAL 649 (791)
Q Consensus 609 d~~D~~~n--~n~vFfdii-~~grDG-~qgp~y~GTGcv~RR~AL 649 (791)
+....++. ....++... ...... ....+..++|+++||+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~li~~~~~ 160 (281)
T TIGR01556 116 GTSRRLPAIHLDGLLLRQISLDGLTTPQKTSFLISSGCLITREVY 160 (281)
T ss_pred CCcccCCceeecccceeeecccccCCceeccEEEcCcceeeHHHH
Confidence 22222211 111111100 001111 122356788999999999
No 62
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=97.65 E-value=0.00025 Score=76.23 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=42.2
Q ss_pred ccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc-cCCCCcceEEEec
Q 003854 543 HKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKKICYVQF 601 (791)
Q Consensus 543 h~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl-Dp~~g~~vafVQt 601 (791)
..|++|+|..+.. +.+++|+.+|+|-...+|++|.+.+-.|. +|. +.+|..
T Consensus 101 ~Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~----~~~V~g 152 (306)
T PRK13915 101 PGKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDPG----VHLVKA 152 (306)
T ss_pred CCHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCCC----ceEEEE
Confidence 3699999999986 67999999999994379999999998876 664 667765
No 63
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=97.62 E-value=4.3e-05 Score=74.05 Aligned_cols=83 Identities=28% Similarity=0.381 Sum_probs=62.8
Q ss_pred EEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCccccchhhhhhhh----ccccccCCC-cccc
Q 003854 564 YLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDIN----MKGLDGIQG-PIYV 638 (791)
Q Consensus 564 fILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n~n~vFfdii----~~grDG~qg-p~y~ 638 (791)
+|+++|+|. .+.+++|++++.+|.+| ++++||+|+.+++ .+..+.+.+.++|... ....+..+. ..+.
T Consensus 1 ~v~~~DaDt-~~~~d~l~~~~~~~~~~----~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T PF13632_consen 1 YVLFLDADT-RLPPDFLERLVAALEDP----KVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLS 73 (193)
T ss_pred CEEEEcCCC-CCChHHHHHHHHHHhCC----CceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCcccc
Confidence 689999999 58999999999999877 4999999999863 3556667777776321 122233433 4588
Q ss_pred ccchhhhhhhh---cCCC
Q 003854 639 GTGCVFRRQAL---YGYD 653 (791)
Q Consensus 639 GTGcv~RR~AL---~G~~ 653 (791)
|+|.++||+|| .|++
T Consensus 74 G~~~~~r~~~l~~vg~~~ 91 (193)
T PF13632_consen 74 GSGMLFRREALREVGGFD 91 (193)
T ss_pred CcceeeeHHHHHHhCccc
Confidence 99999999999 3555
No 64
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.50 E-value=0.0036 Score=72.15 Aligned_cols=113 Identities=24% Similarity=0.365 Sum_probs=81.5
Q ss_pred EEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc-cCCCCcceEEEecCccccC
Q 003854 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKKICYVQFPQRFDG 607 (791)
Q Consensus 529 lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl-Dp~~g~~vafVQtPQ~F~N 607 (791)
+.|--|.+ |-..||||+-...|-=| +.-.++|+||||- +-..+.+-+.+-.|. +| +.|++||--.-.|
T Consensus 214 ifYRrRr~----n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADS-vMtgd~lvrLv~~ME~~P----~aGlIQt~P~~~g 282 (736)
T COG2943 214 IFYRRRRR----NVKRKAGNIADFCRRWG--SAYSYMLVLDADS-VMTGDCLVRLVRLMEANP----DAGLIQTSPKASG 282 (736)
T ss_pred eeeehHhh----hhcccccCHHHHHHHhC--cccceEEEeeccc-ccCchHHHHHHHHHhhCC----CCceeecchhhcC
Confidence 44544433 55689999999998755 6678999999999 689999999888885 55 5789999654443
Q ss_pred CCCCCccccch----hhhhhhhccccccCCC--ccccccchhhhhhhh---cCCCC
Q 003854 608 IDRHDRYSNRN----VVFFDINMKGLDGIQG--PIYVGTGCVFRRQAL---YGYDA 654 (791)
Q Consensus 608 id~~D~~~n~n----~vFfdii~~grDG~qg--p~y~GTGcv~RR~AL---~G~~P 654 (791)
.+ -.|+--| +++=-+...|+.-||+ .-|=|-|+++|-+|. .|+.|
T Consensus 283 g~--TL~AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF~~hcgLp~ 336 (736)
T COG2943 283 GD--TLYARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAFIEHCGLPP 336 (736)
T ss_pred cc--hHHHHHHHHHHHHhchHHhhhhHHHhccccccccccceeechhhHHhcCCCC
Confidence 32 1233221 2333466678888877 469999999999999 67755
No 65
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=97.44 E-value=0.0011 Score=69.71 Aligned_cols=108 Identities=12% Similarity=0.200 Sum_probs=69.4
Q ss_pred ccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCccccch----
Q 003854 543 HKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRN---- 618 (791)
Q Consensus 543 h~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n~n---- 618 (791)
-.+|.|.|.++.. +++++|+++|+|+ ++.|++|..++-++..=. ....+++-.|-.|.+.+....+-...
T Consensus 74 f~~a~arN~g~~~----A~~d~l~flD~D~-i~~~~~i~~~~~~~~~l~-~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~ 147 (281)
T PF10111_consen 74 FSRAKARNIGAKY----ARGDYLIFLDADC-IPSPDFIEKLLNHVKKLD-KNPNAFLVYPCLYLSEEGSEKFYSQFKNLW 147 (281)
T ss_pred cCHHHHHHHHHHH----cCCCEEEEEcCCe-eeCHHHHHHHHHHHHHHh-cCCCceEEEeeeeccchhhHHHhhcchhcc
Confidence 3799999999997 6899999999999 589999999998422110 11245677776766554433222221
Q ss_pred -hhhh-hhhccccccCCCccccccchhhhhhhh---cCCCCCC
Q 003854 619 -VVFF-DINMKGLDGIQGPIYVGTGCVFRRQAL---YGYDAPV 656 (791)
Q Consensus 619 -~vFf-dii~~grDG~qgp~y~GTGcv~RR~AL---~G~~Pp~ 656 (791)
..+. .......+-+.....+|++.++||++. .|||...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f 190 (281)
T PF10111_consen 148 DHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGFDERF 190 (281)
T ss_pred hHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCCCccc
Confidence 1112 122222333344456778888999877 7998764
No 66
>PRK10063 putative glycosyl transferase; Provisional
Probab=97.35 E-value=0.0014 Score=68.06 Aligned_cols=46 Identities=15% Similarity=0.057 Sum_probs=35.7
Q ss_pred cceeEEEecCCCCCCCHHHHHHHHHHHHcC-CCCCCccEEEEcCCCCchhh
Q 003854 360 AKVDIFVSTVDPMKEPPLITANTVLSILAV-DYPVDKVACYVSDDGAAMLT 409 (791)
Q Consensus 360 P~VDVFV~T~DP~kEPp~vt~nTVlS~lAl-DYP~~Kl~~YVsDDG~s~lT 409 (791)
|.|-|+|+|| |+. ..+..|+.|++++ ..+...+.++|.|||.+.-|
T Consensus 1 ~~vSVIi~~y---N~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t 47 (248)
T PRK10063 1 MLLSVITVAF---RNL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGT 47 (248)
T ss_pred CeEEEEEEeC---CCH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccH
Confidence 5689999999 874 4678999999864 33334689999999988744
No 67
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=97.23 E-value=0.00034 Score=69.55 Aligned_cols=96 Identities=23% Similarity=0.250 Sum_probs=70.4
Q ss_pred CccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCccccc-hhh
Q 003854 542 HHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNR-NVV 620 (791)
Q Consensus 542 Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n~-n~v 620 (791)
-+.|..||-++++. . ...++|+++|+|+. .+|++|++++..|.||+ +++|..+.++.+.+ . +... -..
T Consensus 15 ~N~Kv~nL~~~~~~-~--a~~d~~~~~DsDi~-v~p~~L~~lv~~l~~p~----vglVt~~~~~~~~~--~-~~~~l~~~ 83 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA-G--AKYDYLVISDSDIR-VPPDYLRELVAPLADPG----VGLVTGLPRGVPAR--G-FWSRLEAA 83 (175)
T ss_pred CChHHHHHHHHHHh-h--CCCCEEEEECCCee-ECHHHHHHHHHHHhCCC----CcEEEecccccCCc--C-HHHHHHHH
Confidence 47899999999986 2 68999999999995 78999999999999985 77998876655443 2 2211 111
Q ss_pred ---hhhhhccccccCCCccccccchhhhhhhhc
Q 003854 621 ---FFDINMKGLDGIQGPIYVGTGCVFRRQALY 650 (791)
Q Consensus 621 ---Ffdii~~grDG~qgp~y~GTGcv~RR~AL~ 650 (791)
|+-..+... -+..+..|...++||++|.
T Consensus 84 ~~~~~~~~~~a~--~~~~~~~G~~m~~rr~~L~ 114 (175)
T PF13506_consen 84 FFNFLPGVLQAL--GGAPFAWGGSMAFRREALE 114 (175)
T ss_pred HHhHHHHHHHHh--cCCCceecceeeeEHHHHH
Confidence 222222222 2457899999999999994
No 68
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.12 E-value=0.0039 Score=54.98 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=40.2
Q ss_pred CcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhh
Q 003854 359 LAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLT 409 (791)
Q Consensus 359 LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lT 409 (791)
.|.|-|+|||+ |++ ..+..+|.|+++..|+. ..|.|.|||.+.-|
T Consensus 2 ~~~~siiip~~---n~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t 46 (291)
T COG0463 2 MPKVSVVIPTY---NEE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGT 46 (291)
T ss_pred CccEEEEEecc---chh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCCh
Confidence 57899999999 877 89999999999999997 56999999999854
No 69
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=96.95 E-value=0.0083 Score=65.02 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=35.8
Q ss_pred ccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc
Q 003854 543 HKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM 588 (791)
Q Consensus 543 h~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl 588 (791)
..|++|+|++++. +.|++|+.+|||.. ..|+.+.+.+-.+.
T Consensus 76 ~G~~~A~~~G~~~----A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 76 YGQHSAIMAGFSH----VTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CCHHHHHHHHHHh----CCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 3689999999987 67999999999994 89999988887764
No 70
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.23 E-value=0.0021 Score=70.39 Aligned_cols=48 Identities=35% Similarity=1.054 Sum_probs=43.4
Q ss_pred ccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccc
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Y 88 (791)
.|..|=+.+-++. .-|.+| -|+|.|||.||.--|.+=|+-||-|...|
T Consensus 16 ~cplcie~mditd--knf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDITD--KNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCccccccccccc--CCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 6999999987764 359999 99999999999998999999999999999
No 71
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=96.21 E-value=0.049 Score=60.21 Aligned_cols=89 Identities=10% Similarity=0.236 Sum_probs=59.4
Q ss_pred CccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHH---HHhhcccc-cCCCCcceEEEecCccccCCCCCCccccc
Q 003854 542 HHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKAL---REAMCFMM-DPQSGKKICYVQFPQRFDGIDRHDRYSNR 617 (791)
Q Consensus 542 Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~L---r~amcffl-Dp~~g~~vafVQtPQ~F~Nid~~D~~~n~ 617 (791)
.|+|+ |+|.++.. .+++++++||-|+ ++.|+|| .++++++. |+ +|..|-. +|-.-.....+.
T Consensus 83 ~hyk~-aln~vF~~----~~~~~vIILEDDl-~~sPdFf~yf~~~l~~y~~D~----~v~~ISa----~NdnG~~~~~~~ 148 (334)
T cd02514 83 RHYKW-ALTQTFNL----FGYSFVIILEDDL-DIAPDFFSYFQATLPLLEEDP----SLWCISA----WNDNGKEHFVDD 148 (334)
T ss_pred HHHHH-HHHHHHHh----cCCCEEEEECCCC-ccCHhHHHHHHHHHHHHhcCC----CEEEEEe----eccCCcccccCC
Confidence 35555 78888865 4799999999999 6999955 89998886 44 5777766 221000000000
Q ss_pred -hhhhhhhhccccccCCCccccccchhhhhhhhcCCCC
Q 003854 618 -NVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDA 654 (791)
Q Consensus 618 -n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL~G~~P 654 (791)
...+| ..-++.|.|.+++|++...++|
T Consensus 149 ~~~~ly----------rs~ff~glGWml~r~~W~e~~~ 176 (334)
T cd02514 149 TPSLLY----------RTDFFPGLGWMLTRKLWKELEP 176 (334)
T ss_pred CcceEE----------EecCCCchHHHHHHHHHHHhCC
Confidence 11222 2457899999999999987766
No 72
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.19 E-value=0.034 Score=56.29 Aligned_cols=42 Identities=12% Similarity=0.208 Sum_probs=36.3
Q ss_pred cchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccC
Q 003854 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDP 590 (791)
Q Consensus 544 ~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp 590 (791)
..+.+.|.++.. ..+++|+++|+|- +..++.+.+.+-++.+.
T Consensus 58 g~~~~~n~~~~~----a~~d~vl~lDaD~-~~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 58 GFGAQRNFALEL----ATNDWVLSLDADE-RLTPELADEILALLATD 99 (229)
T ss_pred ChHHHHHHHHHh----CCCCEEEEEeCCc-CcCHHHHHHHHHHHhCC
Confidence 578999999986 5688999999999 58999999999888654
No 73
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=95.77 E-value=0.1 Score=55.62 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=47.9
Q ss_pred eEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCC-EEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCcccc
Q 003854 528 SLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAP-YLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFD 606 (791)
Q Consensus 528 ~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngp-fILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~ 606 (791)
.+.|+.-.+.-| =||+.|.+++.. +.++. |++.|+-|. +..+++|.+.+-.+... +.+++|+.-.+.+
T Consensus 57 ~v~~i~~~~NlG-----~agg~n~g~~~a--~~~~~~~~l~LN~D~-~~~~~~l~~ll~~~~~~---~~~~~~~~~i~~~ 125 (305)
T COG1216 57 NVRLIENGENLG-----FAGGFNRGIKYA--LAKGDDYVLLLNPDT-VVEPDLLEELLKAAEED---PAAGVVGPLIRNY 125 (305)
T ss_pred cEEEEEcCCCcc-----chhhhhHHHHHH--hcCCCcEEEEEcCCe-eeChhHHHHHHHHHHhC---CCCeEeeeeEecC
Confidence 355555544434 488889887763 24433 999999996 79999999999888633 2477777766654
Q ss_pred C
Q 003854 607 G 607 (791)
Q Consensus 607 N 607 (791)
+
T Consensus 126 ~ 126 (305)
T COG1216 126 D 126 (305)
T ss_pred C
Confidence 4
No 74
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.61 E-value=0.0082 Score=50.41 Aligned_cols=45 Identities=33% Similarity=0.925 Sum_probs=37.5
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCC--Ccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQ--CKTRY 88 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPq--CKt~Y 88 (791)
+.+|.+||+.|- +|++.|.|.+|+=|.=|+||+++ +.|-- |++.|
T Consensus 5 ~~~C~~Cg~~~~---~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFK---DGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCccc---CCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 558999999974 48889999999999999999876 45665 77766
No 75
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.95 E-value=0.027 Score=61.62 Aligned_cols=54 Identities=22% Similarity=0.556 Sum_probs=49.0
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~ 91 (791)
.+.|.+|-.+..++.+=.++|. +|+-.+|+.|.+--...|...||+|++..++.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 4799999999999998888888 99999999999887788989999999999875
No 76
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=89.39 E-value=0.4 Score=35.57 Aligned_cols=44 Identities=36% Similarity=0.882 Sum_probs=32.7
Q ss_pred ccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccc
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~ 87 (791)
.|.||.+.+ .+.++ ...|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~~-~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPVV-LLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCceE-ecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998886 22322 335899999999976666678889999875
No 77
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.06 E-value=0.4 Score=47.22 Aligned_cols=52 Identities=33% Similarity=0.827 Sum_probs=38.7
Q ss_pred cccccccccccccCCCCceeecCC-CCCCcchhhHHHHHh--hcCCCCCCCcccccccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNE-CAFPVCRPCYEYERR--EGNQACPQCKTRYKRLK 92 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~e-C~FpvCr~Cyeyerk--eG~q~CPqCKt~Ykr~k 92 (791)
--|.||.|. -.-+-|.-=|| |||.||-.||--=.| .-.-+||-|||-||..+
T Consensus 81 YeCnIC~et----S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKET----SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccc----cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 469999874 22344665555 599999999976666 45589999999998653
No 78
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=82.59 E-value=1.5 Score=36.07 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=33.9
Q ss_pred ccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
+|.||++-+ .+ +.+ ..|++-.||.|.+--.++ ++.||.|+.++.
T Consensus 3 ~Cpi~~~~~-~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVM-KD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcC-CC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC
Confidence 699999863 22 333 368999999999877766 678999998873
No 79
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=77.07 E-value=1.2 Score=53.67 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=17.1
Q ss_pred chhhHHHHHhhcCCCCCCCccccc
Q 003854 66 CRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 66 Cr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
|.-|- .+...|..-||+|+++-.
T Consensus 30 Cp~CG-~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 30 CPQCG-TEVPVDEAHCPNCGAETG 52 (645)
T ss_pred CCCCC-CCCCcccccccccCCccc
Confidence 44444 446788899999999865
No 80
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.28 E-value=2.6 Score=44.92 Aligned_cols=46 Identities=35% Similarity=0.850 Sum_probs=37.1
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHH---HhhcCCCCCCCccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE---RREGNQACPQCKTRYK 89 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeye---rkeG~q~CPqCKt~Yk 89 (791)
---|.||=|.. =|+.|-| |+---|.||. |- ....++.||=||..-.
T Consensus 47 ~FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 47 FFDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred ceeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCccccccc
Confidence 34799996653 4578888 9999999998 76 5688899999998763
No 81
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=76.26 E-value=7.2 Score=41.07 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=35.5
Q ss_pred CeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc
Q 003854 527 PSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM 588 (791)
Q Consensus 527 P~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl 588 (791)
+++.-..|.+.-|-. -|.=+.+.+ ..++||++.|||. .-+|+++-+.+-..-
T Consensus 63 d~i~l~pR~~klGLg-----tAy~hgl~~----a~g~fiviMDaDl-sHhPk~ipe~i~lq~ 114 (238)
T KOG2978|consen 63 DNILLKPRTKKLGLG-----TAYIHGLKH----ATGDFIVIMDADL-SHHPKFIPEFIRLQK 114 (238)
T ss_pred CcEEEEeccCcccch-----HHHHhhhhh----ccCCeEEEEeCcc-CCCchhHHHHHHHhh
Confidence 346667787754422 233344554 6799999999999 689999888655443
No 82
>PHA02929 N1R/p28-like protein; Provisional
Probab=74.90 E-value=3.7 Score=43.98 Aligned_cols=55 Identities=20% Similarity=0.581 Sum_probs=39.3
Q ss_pred cCCcccccccccccccC-CCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 34 LSGQTCQICEDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 34 ~~~~~C~iCgd~vg~~~-~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
.....|.||.+.+.-++ ....|..=..|+-..|+.|.. +-.+.++.||-|++++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcCCCCCCCCCEee
Confidence 34679999999876443 111233344789999999995 44556789999999874
No 83
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=74.18 E-value=17 Score=40.43 Aligned_cols=58 Identities=22% Similarity=0.242 Sum_probs=38.3
Q ss_pred ceeEEEecCCCCCCCH---HHHHHHHHHHHcCCCCC---CccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcC
Q 003854 361 KVDIFVSTVDPMKEPP---LITANTVLSILAVDYPV---DKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNI 432 (791)
Q Consensus 361 ~VDVFV~T~DP~kEPp---~vt~nTVlS~lAlDYP~---~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~I 432 (791)
..-|+||.| |||- .+.-.||- -|.-.|-. =+..+.|+|||...-|.+.- +-||+|++.
T Consensus 68 ~lsVIVpay---nE~~ri~~mldeav~-~le~ry~~~~~F~~eiiVvddgs~d~T~~~a----------~k~s~K~~~ 131 (323)
T KOG2977|consen 68 YLSVIVPAY---NEEGRIGAMLDEAVD-YLEKRYLSDKSFTYEIIVVDDGSTDSTVEVA----------LKFSRKLGD 131 (323)
T ss_pred eeEEEEecC---CcccchHHHHHHHHH-HHHHHhccCCCCceeEEEeCCCCchhHHHHH----------HHHHHHcCc
Confidence 678999999 7773 33334443 34444443 36789999999998765443 347778763
No 84
>PHA02862 5L protein; Provisional
Probab=73.45 E-value=2.5 Score=42.44 Aligned_cols=49 Identities=29% Similarity=0.544 Sum_probs=31.9
Q ss_pred CcccccccccccccCCCCceeecCCC---CCCcchhhHHHH-HhhcCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNEC---AFPVCRPCYEYE-RREGNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC---~FpvCr~Cyeye-rkeG~q~CPqCKt~Ykr 90 (791)
+.+|.||-++ +++..-+| .| .=-|=+.|.+-= ...++..|++||++|.-
T Consensus 2 ~diCWIC~~~-----~~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDV-----CDERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCc-----CCCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4689999876 23446778 44 112335565322 34778999999999964
No 85
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=73.36 E-value=2.2 Score=34.53 Aligned_cols=26 Identities=35% Similarity=0.824 Sum_probs=21.1
Q ss_pred ccccccccccccCCCCceeecCCCCCCc
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPV 65 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~Fpv 65 (791)
+|.-||.++.++.. .-+-|.+|++.|
T Consensus 4 ~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 4 ICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred ECCCCCCEeecCCC--CceECCCCCceE
Confidence 79999999888743 348899999876
No 86
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=72.70 E-value=2.9 Score=32.64 Aligned_cols=43 Identities=35% Similarity=0.764 Sum_probs=33.3
Q ss_pred ccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCc
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCK 85 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCK 85 (791)
.|.||-+++.. ++..+... |+=-.|+.|..--.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999755 77777775 9999999998655444 57999995
No 87
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=71.40 E-value=0.82 Score=39.36 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=22.6
Q ss_pred hhhHHHHHhhcCCCCCCCccccccccC
Q 003854 67 RPCYEYERREGNQACPQCKTRYKRLKG 93 (791)
Q Consensus 67 r~CyeyerkeG~q~CPqCKt~Ykr~kG 93 (791)
+-|+|++..||.=.||.|+..|--..|
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~dG 68 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIRDG 68 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred hhhhcccccCCEEEcCCCCCEEeCCCC
Confidence 467888999999999999999966543
No 88
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=71.05 E-value=2.9 Score=31.87 Aligned_cols=26 Identities=27% Similarity=0.772 Sum_probs=18.9
Q ss_pred ccccccccccccCCCCceeecCCCCCCc
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPV 65 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~Fpv 65 (791)
+|.-||.+|.+... + -|-|.+|++.|
T Consensus 2 ~C~~Cg~~~~~~~~-~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKPG-D-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BSTS-S-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCCC-C-cEECCcCCCeE
Confidence 68899999997653 3 37999999875
No 89
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=67.21 E-value=2.5 Score=36.03 Aligned_cols=46 Identities=28% Similarity=0.644 Sum_probs=33.0
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~ 91 (791)
-|.|-.|+..-.. ..+.+ |+--||+-|+.-||-.| ||=|.+|+...
T Consensus 7 ~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 4566667765221 13344 59999999999988776 99999999653
No 90
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=66.66 E-value=4.6 Score=44.40 Aligned_cols=52 Identities=21% Similarity=0.580 Sum_probs=43.0
Q ss_pred ccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~ 91 (791)
-|.+|--++-++.+ ++.--|+|+.+.|-.|..-=-.-|...||.|.+..+.-
T Consensus 2 ~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 58888888888765 66666799999999999666668889999999988653
No 91
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=64.81 E-value=6.7 Score=27.82 Aligned_cols=39 Identities=38% Similarity=0.949 Sum_probs=26.9
Q ss_pred cccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCC
Q 003854 39 CQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (791)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqC 84 (791)
|.||.+. .....+ -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~-----~~~~~~--~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE-----LKDPVV--LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC-----CCCcEE--ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 6788776 112222 25888899999976666677789987
No 92
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=64.37 E-value=5.6 Score=40.46 Aligned_cols=51 Identities=27% Similarity=0.513 Sum_probs=34.6
Q ss_pred CCcccccccccccccCCCCceeecCCCCC---CcchhhHHHHH-hhcCCCCCCCccccccc
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAF---PVCRPCYEYER-REGNQACPQCKTRYKRL 91 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~F---pvCr~Cyeyer-keG~q~CPqCKt~Ykr~ 91 (791)
.+..|.||-++ +++..-+| .|.= -|=+.|-+-=. .-++..|++|+++|.-.
T Consensus 7 ~~~~CRIC~~~-----~~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDE-----YDVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCC-----CCCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 45699999766 23345688 5533 23467876543 35689999999999654
No 93
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=64.01 E-value=7.3 Score=40.68 Aligned_cols=52 Identities=29% Similarity=0.699 Sum_probs=35.3
Q ss_pred ccccCCcccccccccccccCCCCceeecCCCCCCcchhhHHHHH---------------hhcCCCCCCCccccc
Q 003854 31 VKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYER---------------REGNQACPQCKTRYK 89 (791)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeyer---------------keG~q~CPqCKt~Yk 89 (791)
+...+.-.|.||-+.+- ++.+ -.|+--.|++|-+.-. +.+...||-|++...
T Consensus 13 ~~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 13 VDSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred ccCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 33344569999998752 2333 2689999999996321 113468999999884
No 94
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=63.49 E-value=1.2 Score=42.23 Aligned_cols=47 Identities=26% Similarity=0.675 Sum_probs=34.5
Q ss_pred CCcccccccccccccC-CCCceeecCCCCCCcchhhHHHHHhhcCCCCCCC
Q 003854 35 SGQTCQICEDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~-~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqC 84 (791)
+...|.+|+...|+-. .| ..|..|...||+.|-.|-.+++-=.|-=|
T Consensus 53 ~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred CCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 6669999999987664 35 88999999999999988445554456544
No 95
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=62.86 E-value=5 Score=44.62 Aligned_cols=46 Identities=30% Similarity=0.850 Sum_probs=38.0
Q ss_pred cccCCCCceeecCCCCCCc--------ch--hhHHHHHhhcCCCCCCCcccccccc
Q 003854 47 EITDNGEPFVACNECAFPV--------CR--PCYEYERREGNQACPQCKTRYKRLK 92 (791)
Q Consensus 47 g~~~~Ge~fvaC~eC~Fpv--------Cr--~CyeyerkeG~q~CPqCKt~Ykr~k 92 (791)
|-..+|...--|.-|+||| |+ .|||-+|.+-.+.||.|-.|-.|..
T Consensus 82 gek~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 82 GEKQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIE 137 (389)
T ss_pred cccccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHH
Confidence 3345677677899999998 54 6999999999999999999998874
No 96
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=60.15 E-value=23 Score=36.78 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=36.2
Q ss_pred cchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhccc-ccCC
Q 003854 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM-MDPQ 591 (791)
Q Consensus 544 ~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcff-lDp~ 591 (791)
.-|=+.|.+++. +.++|++.+.=|-++.+++++.+++-.| .||+
T Consensus 41 s~~~~yN~a~~~----a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~ 85 (217)
T PF13712_consen 41 SMAAAYNEAMEK----AKAKYLVFLHQDVFIINENWLEDILEIFEEDPN 85 (217)
T ss_dssp -TTTHHHHHGGG------SSEEEEEETTEE-SSHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHh----CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCC
Confidence 467789999997 7899999999999999999999999999 7875
No 97
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=59.71 E-value=7 Score=43.64 Aligned_cols=52 Identities=29% Similarity=0.833 Sum_probs=43.0
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~ 91 (791)
...|.||++.. +.+--.|++| -|+|-+|-+|- --.-+++..||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~-~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCH-KTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhh-hcccccCCCCCccCCccccC
Confidence 36899999985 4555579999 99999999998 34568899999999999764
No 98
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=58.60 E-value=7.8 Score=43.29 Aligned_cols=40 Identities=30% Similarity=0.738 Sum_probs=30.7
Q ss_pred ccccCCccccc--ccccccccCCCCceeecCC-CCCCcchhhHH
Q 003854 31 VKELSGQTCQI--CEDEIEITDNGEPFVACNE-CAFPVCRPCYE 71 (791)
Q Consensus 31 ~~~~~~~~C~i--Cgd~vg~~~~Ge~fvaC~e-C~FpvCr~Cye 71 (791)
+.+..|-.|.- ||..+-...| .--|.|.. |+|-.||.|.|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e 352 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKE 352 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHh
Confidence 45667889986 9988665542 23588877 99999999998
No 99
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=56.85 E-value=6 Score=32.92 Aligned_cols=28 Identities=21% Similarity=0.730 Sum_probs=18.2
Q ss_pred ccccccccccccCCCCceeecCCCCCCcchhhHH
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYE 71 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cye 71 (791)
.|.|||.+||+... .-+ +=+| ||..|+.
T Consensus 1 ~C~iCg~kigl~~~--~k~---~DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR--FKI---KDGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc--eec---cCcc-chHHHHH
Confidence 59999999998653 111 1123 7788874
No 100
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=54.52 E-value=10 Score=28.84 Aligned_cols=40 Identities=30% Similarity=0.707 Sum_probs=29.7
Q ss_pred cccccccccccCCCCceeecCCCCCCcchhhHHHHHh-hcCCCCCCC
Q 003854 39 CQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERR-EGNQACPQC 84 (791)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeyerk-eG~q~CPqC 84 (791)
|.||.+...... --..|+-..|+.|..--.+ .+...||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 678877643322 2347899999999987766 788889988
No 101
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK00420 hypothetical protein; Validated
Probab=54.35 E-value=5.4 Score=38.37 Aligned_cols=30 Identities=27% Similarity=0.629 Sum_probs=22.8
Q ss_pred eecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 003854 56 VACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (791)
Q Consensus 56 vaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~ 91 (791)
-.|..|++|.= +.++|.-.||.|++.+...
T Consensus 24 ~~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v~ 53 (112)
T PRK00420 24 KHCPVCGLPLF------ELKDGEVVCPVHGKVYIVK 53 (112)
T ss_pred CCCCCCCCcce------ecCCCceECCCCCCeeeec
Confidence 45888888763 3378889999999988643
No 103
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=53.22 E-value=50 Score=38.34 Aligned_cols=46 Identities=17% Similarity=0.093 Sum_probs=35.8
Q ss_pred CCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCC
Q 003854 355 KPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDD 403 (791)
Q Consensus 355 ~~~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDD 403 (791)
.+.+||++.|+|.-. ||--..+++||.|++.-.=|.=--.|.+.||
T Consensus 150 Ype~Lpt~SVviVFH---NEGws~LmRTVHSVi~RsP~~~l~eivlvDD 195 (603)
T KOG3737|consen 150 YPENLPTSSVVIVFH---NEGWSTLMRTVHSVIKRSPRKYLAEIVLVDD 195 (603)
T ss_pred CcccCCcceEEEEEe---cCccHHHHHHHHHHHhcCcHHhhheEEEecc
Confidence 357899999999999 9999999999999886543332334666666
No 104
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=53.09 E-value=14 Score=29.63 Aligned_cols=45 Identities=22% Similarity=0.605 Sum_probs=31.6
Q ss_pred ccccccccccccCCCCceeecCCCCCC-cchhhHHHHHhhcCCCCCCCcccccc
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~Fp-vCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
.|.||.+..-. -.|. .|+=- +|..|++--++ ....||-|+++.++
T Consensus 4 ~C~iC~~~~~~----~~~~---pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 4 ECPICFENPRD----VVLL---PCGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp B-TTTSSSBSS----EEEE---TTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCccCCccCCc----eEEe---CCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 69999987321 2344 45777 99999966665 77999999998753
No 105
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=52.78 E-value=13 Score=28.39 Aligned_cols=39 Identities=38% Similarity=0.942 Sum_probs=27.1
Q ss_pred cccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCC
Q 003854 39 CQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (791)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqC 84 (791)
|.||-+...- +++. ..|+--.|+.|.+--.+. +..||.|
T Consensus 1 C~iC~~~~~~-----~~~~-~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVV-TPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEE-CTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC-----cCEE-CCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 6788665322 4343 378999999999776666 7899987
No 106
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=52.54 E-value=9.5 Score=30.49 Aligned_cols=27 Identities=30% Similarity=0.803 Sum_probs=17.7
Q ss_pred ccccccccccccCCCCceeecCCCCCCc
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPV 65 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~Fpv 65 (791)
.|+-||..+.+++... -+-|..|+.++
T Consensus 5 ~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 6778888777766554 35666666554
No 107
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=50.40 E-value=14 Score=29.44 Aligned_cols=36 Identities=22% Similarity=0.760 Sum_probs=27.4
Q ss_pred CcccccccccccccCCCCceeecCCC-CCCcchhhHHHHHhh
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNEC-AFPVCRPCYEYERRE 76 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC-~FpvCr~Cyeyerke 76 (791)
...|..|+..| .|.-| .|.+| .|-+|..||..-+..
T Consensus 4 ~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~ 40 (44)
T smart00291 4 SYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAG 40 (44)
T ss_pred CcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcC
Confidence 45799999854 36656 79999 999999999754433
No 108
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=50.23 E-value=11 Score=31.91 Aligned_cols=33 Identities=30% Similarity=0.695 Sum_probs=24.9
Q ss_pred CCcccccccccccccCCCCceeecCCCCCCcchh
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRP 68 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~ 68 (791)
.+|+|..||..+..+..+..|+ |..|+|-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~-C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFT-CPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccceEE-cCCCCCEECcH
Confidence 5789999999988755666554 87898876554
No 109
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=47.92 E-value=15 Score=29.45 Aligned_cols=31 Identities=32% Similarity=0.798 Sum_probs=25.1
Q ss_pred ccccccccccccCCCCceeecCCCC-CCcchhhHHHH
Q 003854 38 TCQICEDEIEITDNGEPFVACNECA-FPVCRPCYEYE 73 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~-FpvCr~Cyeye 73 (791)
.|.+|+..|. | ....|.+|. |-+|..||...
T Consensus 2 ~C~~C~~~i~----g-~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 2 SCDGCLKPIV----G-VRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCcCCCCCCc----C-CEEECCCCCCCcCHHHHHCcC
Confidence 5889998532 5 789999997 99999999643
No 110
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=47.11 E-value=15 Score=42.24 Aligned_cols=29 Identities=21% Similarity=0.521 Sum_probs=21.7
Q ss_pred ceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 003854 54 PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (791)
Q Consensus 54 ~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~ 91 (791)
..++|++|+.-+ ..+...||+|++.-.|.
T Consensus 220 ~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~ 248 (419)
T PRK15103 220 GLRSCSCCTAIL---------PADQPVCPRCHTKGYVR 248 (419)
T ss_pred CCCcCCCCCCCC---------CCCCCCCCCCCCcCcCC
Confidence 467899999864 23445899999998665
No 111
>PRK04023 DNA polymerase II large subunit; Validated
Probab=47.03 E-value=13 Score=47.06 Aligned_cols=45 Identities=22% Similarity=0.575 Sum_probs=32.8
Q ss_pred cCCcccccccccccccCCCCceeecCCCCC-----CcchhhHHHHHhhc-CCCCCCCccccc
Q 003854 34 LSGQTCQICEDEIEITDNGEPFVACNECAF-----PVCRPCYEYERREG-NQACPQCKTRYK 89 (791)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~F-----pvCr~CyeyerkeG-~q~CPqCKt~Yk 89 (791)
.....|.-||... ....|.+|+= ..|..| ++.+ .-.||.|++.-.
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCCC
Confidence 4556999999983 5578999984 368888 3433 367999998654
No 112
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=45.93 E-value=17 Score=29.64 Aligned_cols=30 Identities=33% Similarity=1.036 Sum_probs=25.3
Q ss_pred ccccccccccccCCCCceeecCCC-CCCcchhhHH
Q 003854 38 TCQICEDEIEITDNGEPFVACNEC-AFPVCRPCYE 71 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC-~FpvCr~Cye 71 (791)
.|..|+.++. +...+.|.+| .|-+|-.||.
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhh
Confidence 5888987653 4588999999 9999999995
No 113
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=44.47 E-value=13 Score=27.22 Aligned_cols=28 Identities=36% Similarity=0.955 Sum_probs=12.1
Q ss_pred ccccccccccccCCCCceeecCCCCCCcchhh
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPC 69 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~C 69 (791)
.|.+|+..+. |..+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID----GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS--------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC----CCceEECccCCCccChhc
Confidence 5899998854 368899999999998877
No 114
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=44.21 E-value=20 Score=39.49 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=29.2
Q ss_pred CCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEec
Q 003854 560 SNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQF 601 (791)
Q Consensus 560 tngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQt 601 (791)
+..+||+++|.|| +|.+++-+..+-+..--....+.+||=.
T Consensus 126 a~T~~v~~~DvD~-~ps~~l~~~l~~~~~~~~~~~~~a~VvP 166 (317)
T PF13896_consen 126 ARTDYVFLLDVDF-LPSPGLYEKLLRFARRNIDKSKTAFVVP 166 (317)
T ss_pred cCcceEEEeccee-eeCcchHHHHHHHhhhhccCCceEEEEe
Confidence 5689999999999 6998877776666543223446676643
No 115
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=44.07 E-value=14 Score=42.25 Aligned_cols=30 Identities=20% Similarity=0.543 Sum_probs=21.3
Q ss_pred ceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 003854 54 PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (791)
Q Consensus 54 ~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~ 91 (791)
..++|++|+..+ . ......||+|++.--|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 367899999866 1 13345799999987544
No 116
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=43.70 E-value=10 Score=43.76 Aligned_cols=58 Identities=24% Similarity=0.610 Sum_probs=39.1
Q ss_pred CcccccccccccccCCCCceeecCCCC-CCcchhhHHHHHhhcCCCCCCCccccccccC--CCCcCCC
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECA-FPVCRPCYEYERREGNQACPQCKTRYKRLKG--SPRVEGD 100 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~-FpvCr~CyeyerkeG~q~CPqCKt~Ykr~kG--sprv~gd 100 (791)
...|..|..+| +|-.+|-|.||. |-+|-+|+.--..-|. -||.-+|.-.+. .|.+.++
T Consensus 14 ky~C~~C~~di----t~~i~ikCaeCp~fdLCl~CFs~GaE~~~---H~~~H~Yrim~~~s~~i~~~~ 74 (438)
T KOG0457|consen 14 KYNCDYCSLDI----TGLIRIKCAECPDFDLCLQCFSVGAETGK---HQNDHPYRIMDTNSFPILDPS 74 (438)
T ss_pred CCCCccHhHHh----ccceEEEeecCCCcchhHHHHhcccccCC---CCCCCCceeecCCCCCCCCCC
Confidence 34899999875 477899999998 9999999943222222 245566765543 3454444
No 117
>PRK07220 DNA topoisomerase I; Validated
Probab=43.09 E-value=13 Score=45.61 Aligned_cols=48 Identities=17% Similarity=0.617 Sum_probs=32.3
Q ss_pred ccccccccccccc--CCCCceeecCCCCCCcchhhHHHHHh----hcCCCCCCCcc
Q 003854 37 QTCQICEDEIEIT--DNGEPFVACNECAFPVCRPCYEYERR----EGNQACPQCKT 86 (791)
Q Consensus 37 ~~C~iCgd~vg~~--~~Ge~fvaC~eC~FpvCr~Cyeyerk----eG~q~CPqCKt 86 (791)
..|..||.++... ..|..|+.|. +||-|+--+-..++ --+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4899999875542 3466799996 57888755533321 12478999985
No 118
>PRK12495 hypothetical protein; Provisional
Probab=42.90 E-value=13 Score=39.71 Aligned_cols=30 Identities=30% Similarity=0.847 Sum_probs=21.6
Q ss_pred ceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 54 PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 54 ~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
.-.-|.+|+.||= +..|...||-|.+.+.+
T Consensus 41 sa~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 41 TNAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred chhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 3344666666664 34899999999999864
No 119
>PHA02926 zinc finger-like protein; Provisional
Probab=42.13 E-value=29 Score=37.37 Aligned_cols=61 Identities=23% Similarity=0.572 Sum_probs=41.8
Q ss_pred ccCCccccccccccccc--CCCCceeecCCCCCCcchhhHHHHHhh-----cCCCCCCCccccccccC
Q 003854 33 ELSGQTCQICEDEIEIT--DNGEPFVACNECAFPVCRPCYEYERRE-----GNQACPQCKTRYKRLKG 93 (791)
Q Consensus 33 ~~~~~~C~iCgd~vg~~--~~Ge~fvaC~eC~FpvCr~Cyeyerke-----G~q~CPqCKt~Ykr~kG 93 (791)
.+....|.||=+.|.-. ++..-|--=..|+-.-|..|..--++. +...||.|+++++...=
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 34557999999987543 222223333467889999999766653 24679999999986543
No 120
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=42.00 E-value=18 Score=35.01 Aligned_cols=49 Identities=29% Similarity=0.726 Sum_probs=35.8
Q ss_pred cCCccccccccccccc--CCCCceeecCCCCCCcchhhHHH---HHhhcCCCCCCCcc
Q 003854 34 LSGQTCQICEDEIEIT--DNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKT 86 (791)
Q Consensus 34 ~~~~~C~iCgd~vg~~--~~Ge~fvaC~eC~FpvCr~Cyey---erkeG~q~CPqCKt 86 (791)
..++.|..||....+- ..| -|+.|. .||.|+- |+- ...+....||+|+.
T Consensus 15 ~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 15 KTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred ccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 4578999999995544 568 999994 6999996 221 12255679999996
No 121
>PRK03982 heat shock protein HtpX; Provisional
Probab=41.61 E-value=1e+02 Score=33.33 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=32.4
Q ss_pred HHHHHhhcccccccccchhhhhhhhhhhcCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCC
Q 003854 324 VSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDD 403 (791)
Q Consensus 324 ~swlL~q~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDD 403 (791)
-.|++-.+.+.+|+.+...+ .|...+++-.....+|...|+|--. .+| .|.+.-....+-.|.|+|.
T Consensus 49 ~~~i~~~~~~~~~l~~~~~p-~L~~~v~~la~~~g~~~p~v~v~~~---~~~---------NAfa~G~~~~~~~V~vt~g 115 (288)
T PRK03982 49 SDKIVLASYNARIVSEEEAP-ELYRIVERLAERANIPKPKVAIVPT---QTP---------NAFATGRDPKHAVVAVTEG 115 (288)
T ss_pred hHHHHHHhcCCEECChhhhH-HHHHHHHHHHHHcCCCCCeEEEEeC---CCc---------ceEEeccCCCCeEEEeehH
Confidence 35555567788888765433 2333332111123456567766432 223 3455544444444556554
No 122
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=40.94 E-value=19 Score=31.32 Aligned_cols=31 Identities=26% Similarity=0.734 Sum_probs=24.9
Q ss_pred cCCccccccccc---ccccCCCCceeecCCCCCC
Q 003854 34 LSGQTCQICEDE---IEITDNGEPFVACNECAFP 64 (791)
Q Consensus 34 ~~~~~C~iCgd~---vg~~~~Ge~fvaC~eC~Fp 64 (791)
..|.+|.-|+.- ++..++|...+-|-+|+|.
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred eccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 356789999854 5566899999999999985
No 123
>PF11077 DUF2616: Protein of unknown function (DUF2616); InterPro: IPR020201 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf52; it is a family of uncharacterised viral proteins.
Probab=38.95 E-value=10 Score=38.96 Aligned_cols=26 Identities=27% Similarity=0.864 Sum_probs=19.9
Q ss_pred cccccccccccCCCCceeecCCCCCCc-chh
Q 003854 39 CQICEDEIEITDNGEPFVACNECAFPV-CRP 68 (791)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~Fpv-Cr~ 68 (791)
|+-|... .+.+.-..|+.|-||+ |-.
T Consensus 55 C~fC~~~----~~~~~~~~C~~CfFPl~c~~ 81 (173)
T PF11077_consen 55 CDFCYAV----NTETDRLFCKQCFFPLYCTN 81 (173)
T ss_pred hhHHHhc----ccchhHHHHHhccccccccc
Confidence 9999876 2344578899999999 654
No 124
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=38.89 E-value=11 Score=42.08 Aligned_cols=36 Identities=33% Similarity=0.921 Sum_probs=27.2
Q ss_pred ccccccccccccCCCCceeecCCC-CCCcchhhHHHHHhhc
Q 003854 38 TCQICEDEIEITDNGEPFVACNEC-AFPVCRPCYEYERREG 77 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC-~FpvCr~CyeyerkeG 77 (791)
.|.+|--++ +--.|+.|+|| +|-.|-||+---..-|
T Consensus 7 hCdvC~~d~----T~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDM----TDLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhh----hcceeeeeecccccceehhhhhcccccc
Confidence 688887654 34579999999 9999999995443334
No 125
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=38.71 E-value=7.1e+02 Score=29.24 Aligned_cols=98 Identities=19% Similarity=0.209 Sum_probs=62.7
Q ss_pred CccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEE-ecCccccCCCCCCccccchhh
Q 003854 542 HHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYV-QFPQRFDGIDRHDRYSNRNVV 620 (791)
Q Consensus 542 Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafV-QtPQ~F~Nid~~D~~~n~n~v 620 (791)
-+-|--||=-+.|. ..-|+|++.|.|-. -.|+.+....-=|+.++ +.|+| |+|-.++ ..-.|. +=++ +
T Consensus 155 ~npKInN~mpgy~~----a~ydlvlisDsgI~-m~pdtildm~t~M~she---kmalvtq~py~~d-r~Gf~a-tle~-~ 223 (431)
T KOG2547|consen 155 LNPKINNMMPGYRA----AKYDLVLISDSGIF-MKPDTILDMATTMMSHE---KMALVTQTPYCKD-RQGFDA-TLEQ-V 223 (431)
T ss_pred cChhhhccCHHHHH----hcCCEEEEecCCee-ecCchHHHHHHhhhccc---ceeeecCCceeec-cccchh-hhhh-e
Confidence 35676666666676 67789999999986 78999998888888654 68887 7774443 222221 1111 3
Q ss_pred hhhhhcc----ccccCCCccccccchhhhhhhhc
Q 003854 621 FFDINMK----GLDGIQGPIYVGTGCVFRRQALY 650 (791)
Q Consensus 621 Ffdii~~----grDG~qgp~y~GTGcv~RR~AL~ 650 (791)
||....+ .-+-++--...|-.|++|++||.
T Consensus 224 ~fgTsh~r~yl~~n~~~~~c~tgms~~mrK~~ld 257 (431)
T KOG2547|consen 224 YFGTSHPRIYLSGNVLGFNCSTGMSSMMRKEALD 257 (431)
T ss_pred eeccCCceEEEccccccccccccHHHHHHHHHHH
Confidence 4432211 11223334567888999999994
No 126
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=37.39 E-value=25 Score=43.06 Aligned_cols=59 Identities=36% Similarity=0.871 Sum_probs=42.0
Q ss_pred cCCcccccccccccccCCCC---ceeecCCCC--------------------CCcchhhHH-HH----Hh---hcCCCCC
Q 003854 34 LSGQTCQICEDEIEITDNGE---PFVACNECA--------------------FPVCRPCYE-YE----RR---EGNQACP 82 (791)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge---~fvaC~eC~--------------------FpvCr~Cye-ye----rk---eG~q~CP 82 (791)
....+|.-|=.++---.+=. +|..|..|| ||.|-.|-. |+ || +. -+||
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp-~aCp 177 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQP-IACP 177 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCcccccccccc-ccCc
Confidence 35568999998875443332 699999995 999999974 33 43 44 4999
Q ss_pred CCcccc--ccccC
Q 003854 83 QCKTRY--KRLKG 93 (791)
Q Consensus 83 qCKt~Y--kr~kG 93 (791)
.|+-.| ++++|
T Consensus 178 ~CGP~~~l~~~~g 190 (750)
T COG0068 178 KCGPHLFLVNHDG 190 (750)
T ss_pred ccCCCeEEEcCCC
Confidence 999754 45554
No 127
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=37.23 E-value=35 Score=26.82 Aligned_cols=43 Identities=23% Similarity=0.762 Sum_probs=31.2
Q ss_pred cccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcc
Q 003854 39 CQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKT 86 (791)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt 86 (791)
|.+|-.+. +++..+++. .|+=-+|..|.+--- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l~--~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRLT--SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEEc--ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88898887 333333322 679999999996554 66789999985
No 128
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=36.64 E-value=19 Score=42.86 Aligned_cols=41 Identities=22% Similarity=0.392 Sum_probs=25.6
Q ss_pred ccCCcccccccccccccCCCCceeec----------------CCCCCCcchhhHHHH
Q 003854 33 ELSGQTCQICEDEIEITDNGEPFVAC----------------NECAFPVCRPCYEYE 73 (791)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~Ge~fvaC----------------~eC~FpvCr~Cyeye 73 (791)
.....+|.|||.+-.+..+-.....| .-=.||||..|+..-
T Consensus 195 ~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~l 251 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALKL 251 (593)
T ss_pred cCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHHH
Confidence 34556899999995554443321222 123689999999553
No 129
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.57 E-value=30 Score=39.81 Aligned_cols=53 Identities=25% Similarity=0.646 Sum_probs=36.8
Q ss_pred ccccccCC-cccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 29 KSVKELSG-QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 29 ~~~~~~~~-~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
+.+..+.. ..|.||.+..- ++++ -.|+--.|..|...-... ...||.|++.+.
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred ccccccccccCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 34555544 48999987642 2333 368999999999755443 358999999874
No 130
>PRK04296 thymidine kinase; Provisional
Probab=36.22 E-value=18 Score=36.55 Aligned_cols=35 Identities=29% Similarity=0.536 Sum_probs=23.9
Q ss_pred ccccccccccc----cc------CCCCc-eeecCCCCCCcchhhHH
Q 003854 37 QTCQICEDEIE----IT------DNGEP-FVACNECAFPVCRPCYE 71 (791)
Q Consensus 37 ~~C~iCgd~vg----~~------~~Ge~-fvaC~eC~FpvCr~Cye 71 (791)
.+|..||.+-- +. .+|+. .+--.|=-.|+||.||.
T Consensus 141 ~vC~~Cg~~a~~~~r~~~~~~~~~~~~~~~ig~~e~Y~~~Cr~c~~ 186 (190)
T PRK04296 141 AICVHCGRKATMNQRLIDGGPAVYEGPQVLVGGNESYEAVCRKHYK 186 (190)
T ss_pred EEccccCCccceEEEEeCCCCccCCCCEEEECCcCcEEehhHHhhh
Confidence 48999998732 22 24444 35555667899999994
No 131
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=35.83 E-value=43 Score=29.15 Aligned_cols=49 Identities=24% Similarity=0.540 Sum_probs=35.4
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcC-CCCCCCcc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN-QACPQCKT 86 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~-q~CPqCKt 86 (791)
..+|..||-.|.-.+.+ +-.+|.+|+=-+=.-|. .-||-++ -.||.|+-
T Consensus 7 ~~~CtSCg~~i~~~~~~-~~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 7 PPKCTSCGIEIAPREKA-VKFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCGF 56 (59)
T ss_pred CccccCCCCcccCCCcc-CEeeCCCCCCeeEeech-hHHhcCCceECCCCCC
Confidence 45899999998666656 45579999877444465 5577776 57999973
No 132
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=35.74 E-value=16 Score=41.97 Aligned_cols=69 Identities=23% Similarity=0.482 Sum_probs=44.2
Q ss_pred CCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccc---cc--ccCCCCcCCCCCccc
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY---KR--LKGSPRVEGDEEEDD 105 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Y---kr--~kGsprv~gd~ee~~ 105 (791)
-+-.|..||+-+|+...----.+|-.=--- |==|||--+.|.+.||-|+.-- +| .-|+|-|+.+-++-+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~--rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vesest~~~ 437 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHL--RCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESESTDRC 437 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHH--HHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCcccccccccc
Confidence 355899999999998655445666221111 1126677899999999998321 32 236777777654444
No 133
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.20 E-value=42 Score=29.06 Aligned_cols=47 Identities=30% Similarity=0.803 Sum_probs=34.3
Q ss_pred ccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
-|..|+.++--+. .+-++-=.||-| |.+|-|-.. ..+||-|+--+-+
T Consensus 7 nCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 6999999965543 245555579987 999996554 3699999876643
No 134
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=34.65 E-value=30 Score=27.49 Aligned_cols=45 Identities=22% Similarity=0.729 Sum_probs=31.5
Q ss_pred ccccccccccccCCCCceeecCCCCCCcchhhHHHHHh-----hcCCCCCCCcc
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERR-----EGNQACPQCKT 86 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeyerk-----eG~q~CPqCKt 86 (791)
+|++||. ..+++..|.|..|.--+=..|.....+ ++.=.||.|..
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5899998 567778999999987666667655422 33556776653
No 135
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=33.41 E-value=14 Score=37.51 Aligned_cols=34 Identities=35% Similarity=0.880 Sum_probs=21.6
Q ss_pred cccccccccccc----cCCCCc-eeecCCCCCCcchhhH
Q 003854 37 QTCQICEDEIEI----TDNGEP-FVACNECAFPVCRPCY 70 (791)
Q Consensus 37 ~~C~iCgd~vg~----~~~Ge~-fvaC~eC~FpvCr~Cy 70 (791)
.+|..||.+--. ..+|+. .|--+|=-.|+||.||
T Consensus 138 avC~~Cg~~A~~t~R~~~~~~~i~iGg~e~Y~~~Cr~cy 176 (176)
T PF00265_consen 138 AVCEVCGRKATFTQRIVDDGEQILIGGSEKYEPVCRKCY 176 (176)
T ss_dssp EE-TTTSSEE-EEEEEETTSSSS-TTSTTTEEEE-CTTH
T ss_pred cEECCCCCceeEEEEEcCCCCEEEECCCCeEEEechhhC
Confidence 589999988322 244543 5555788899999998
No 136
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=33.38 E-value=14 Score=27.83 Aligned_cols=18 Identities=28% Similarity=0.678 Sum_probs=11.8
Q ss_pred HHHhhcCCCCCCCccccc
Q 003854 72 YERREGNQACPQCKTRYK 89 (791)
Q Consensus 72 yerkeG~q~CPqCKt~Yk 89 (791)
|+-++....||.|+.+-.
T Consensus 11 y~~~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 11 YDGEEAPWVCPVCGAPKD 28 (33)
T ss_pred ECCCcCCCcCcCCCCcHH
Confidence 343346679999987643
No 137
>PRK07219 DNA topoisomerase I; Validated
Probab=33.35 E-value=24 Score=43.73 Aligned_cols=53 Identities=26% Similarity=0.698 Sum_probs=31.4
Q ss_pred Cccccccccccccc--CCCCceeecCCCCCCcchhhHHHHH----hhcCCCCCCCccccccc
Q 003854 36 GQTCQICEDEIEIT--DNGEPFVACNECAFPVCRPCYEYER----REGNQACPQCKTRYKRL 91 (791)
Q Consensus 36 ~~~C~iCgd~vg~~--~~Ge~fvaC~eC~FpvCr~Cyeyer----keG~q~CPqCKt~Ykr~ 91 (791)
...|..||..+.+. ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 34687887664433 3455 88885 6777753322111 12347899999876544
No 138
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=33.32 E-value=33 Score=28.04 Aligned_cols=32 Identities=19% Similarity=0.540 Sum_probs=24.9
Q ss_pred ccccccccccccCCCCceeecCCCC-CCcchhhHHHHH
Q 003854 38 TCQICEDEIEITDNGEPFVACNECA-FPVCRPCYEYER 74 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~-FpvCr~Cyeyer 74 (791)
.|.+||-++. .+..-|-.++ +-+|.+||+-.|
T Consensus 2 ~C~~Cg~D~t-----~vryh~~~~~~~dLC~~CF~~G~ 34 (45)
T cd02336 2 HCFTCGNDCT-----RVRYHNLKAKKYDLCPSCYQEGR 34 (45)
T ss_pred cccCCCCccC-----ceEEEecCCCccccChHHHhCcC
Confidence 6999999974 2667777776 999999996443
No 139
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=32.90 E-value=22 Score=29.86 Aligned_cols=28 Identities=21% Similarity=0.554 Sum_probs=19.9
Q ss_pred cccccccccccccCCCCceeecCCCCCCc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFPV 65 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~Fpv 65 (791)
-+|..||.+|.++. ...-+.|..|+|.|
T Consensus 7 Y~C~~Cg~~~~~~~-~~~~irCp~Cg~rI 34 (49)
T COG1996 7 YKCARCGREVELDQ-ETRGIRCPYCGSRI 34 (49)
T ss_pred EEhhhcCCeeehhh-ccCceeCCCCCcEE
Confidence 47999999985443 22347898888865
No 140
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=32.81 E-value=13 Score=35.44 Aligned_cols=26 Identities=23% Similarity=0.616 Sum_probs=17.3
Q ss_pred eeecCCCCCCcchhhHHHHHhhcCCCCCCCccc
Q 003854 55 FVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (791)
Q Consensus 55 fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~ 87 (791)
.+-|+.|+ ++++..+-.-.||+|+.+
T Consensus 70 ~~~C~~Cg-------~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 70 QAWCWDCS-------QVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred EEEcccCC-------CEEecCCcCccCcCCCCC
Confidence 35576666 455555555679999975
No 141
>PRK14973 DNA topoisomerase I; Provisional
Probab=32.28 E-value=30 Score=43.73 Aligned_cols=48 Identities=21% Similarity=0.663 Sum_probs=31.5
Q ss_pred ccccccccccccc--CCCCceeecCCCCCCcchhhHHHHHh-hc-----CCCCCCCccc
Q 003854 37 QTCQICEDEIEIT--DNGEPFVACNECAFPVCRPCYEYERR-EG-----NQACPQCKTR 87 (791)
Q Consensus 37 ~~C~iCgd~vg~~--~~Ge~fvaC~eC~FpvCr~Cyeyerk-eG-----~q~CPqCKt~ 87 (791)
..|..||.++-+. ..|. |..|. +||-|+-.+...+. .| .+.||.|+.+
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 4799999876532 3444 99996 66888855543221 12 3689999973
No 142
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=31.99 E-value=15 Score=31.86 Aligned_cols=12 Identities=42% Similarity=1.157 Sum_probs=6.5
Q ss_pred CCCCCCcccccc
Q 003854 79 QACPQCKTRYKR 90 (791)
Q Consensus 79 q~CPqCKt~Ykr 90 (791)
-+||+||+-|..
T Consensus 45 PVCP~Ck~iye~ 56 (58)
T PF11238_consen 45 PVCPECKEIYES 56 (58)
T ss_pred CCCcCHHHHHHh
Confidence 355666665543
No 143
>PRK11827 hypothetical protein; Provisional
Probab=31.93 E-value=31 Score=29.96 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=17.7
Q ss_pred CcchhhHHHHHhhcCCCCCCCccccccccCCC
Q 003854 64 PVCRPCYEYERREGNQACPQCKTRYKRLKGSP 95 (791)
Q Consensus 64 pvCr~CyeyerkeG~q~CPqCKt~Ykr~kGsp 95 (791)
|+|+-=.+|...+..-+|..|+-.|--..|-|
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIP 43 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIP 43 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCcc
Confidence 44443334433333357888888887665544
No 144
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=31.82 E-value=17 Score=34.81 Aligned_cols=28 Identities=14% Similarity=0.610 Sum_probs=15.8
Q ss_pred eecCCCCCCcchhhHHHHHhhcC-CCCCCCcccccc
Q 003854 56 VACNECAFPVCRPCYEYERREGN-QACPQCKTRYKR 90 (791)
Q Consensus 56 vaC~eC~FpvCr~CyeyerkeG~-q~CPqCKt~Ykr 90 (791)
+-|+.|+ ++++..+-. ..||+|+.+-.+
T Consensus 72 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 72 LECKDCS-------HVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred EEhhhCC-------CccccCCccCCcCcCCCCCceE
Confidence 4466665 333333322 359999987544
No 145
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=31.67 E-value=26 Score=35.65 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=40.4
Q ss_pred cccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 45 EIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 45 ~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
-||+..+|-.-+-|.-|+|..|..=.|-++..-+-+=|+|--+|-
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~i 121 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYI 121 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhh
Confidence 488899999999999999999999888888888889999999994
No 146
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=31.60 E-value=9.2 Score=36.21 Aligned_cols=30 Identities=23% Similarity=0.657 Sum_probs=15.6
Q ss_pred eeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 003854 55 FVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (791)
Q Consensus 55 fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~ 91 (791)
-+-|+.|+.. ++..+..-.||+|+.+..+.
T Consensus 70 ~~~C~~Cg~~-------~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 70 RARCRDCGHE-------FEPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp EEEETTTS-E-------EECHHCCHH-SSSSSS-EEE
T ss_pred cEECCCCCCE-------EecCCCCCCCcCCcCCCcEE
Confidence 3556666642 33333334599999986443
No 147
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.95 E-value=13 Score=42.02 Aligned_cols=45 Identities=31% Similarity=0.727 Sum_probs=37.7
Q ss_pred ccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccc
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Y 88 (791)
+|-||=+=|-.+-. =.||+-.+|+.|.--..+.||.-||-|++..
T Consensus 45 ~c~icl~llk~tmt------tkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 45 ICPICLSLLKKTMT------TKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred ccHHHHHHHHhhcc------cHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 89999876654422 2489999999999999999999999999876
No 148
>PRK11595 DNA utilization protein GntX; Provisional
Probab=30.85 E-value=31 Score=36.07 Aligned_cols=38 Identities=24% Similarity=0.683 Sum_probs=25.1
Q ss_pred cccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~ 87 (791)
+.|.+||..+..++ ..+|..|.+.-..- ...||+|+.+
T Consensus 6 ~~C~~C~~~~~~~~------------~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 6 GLCWLCRMPLALSH------------WGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CcCccCCCccCCCC------------CcccHHHHhhCCcc-cCcCccCCCc
Confidence 57999998874321 23788887654332 2589999865
No 149
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=30.82 E-value=20 Score=40.15 Aligned_cols=30 Identities=27% Similarity=0.868 Sum_probs=23.9
Q ss_pred CCCcchhhHHHHHhhcC--CCCCCCccccccc
Q 003854 62 AFPVCRPCYEYERREGN--QACPQCKTRYKRL 91 (791)
Q Consensus 62 ~FpvCr~CyeyerkeG~--q~CPqCKt~Ykr~ 91 (791)
+|-||+.|+---+-.-+ +-||-|.++|+..
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~ 32 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEE 32 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchh
Confidence 57899999966555555 8999999999754
No 150
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=30.24 E-value=15 Score=30.64 Aligned_cols=7 Identities=43% Similarity=1.365 Sum_probs=3.6
Q ss_pred CCCCCcc
Q 003854 80 ACPQCKT 86 (791)
Q Consensus 80 ~CPqCKt 86 (791)
.||.|+.
T Consensus 36 ~CP~C~a 42 (50)
T cd00730 36 VCPVCGA 42 (50)
T ss_pred CCCCCCC
Confidence 5555544
No 151
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.86 E-value=69 Score=38.66 Aligned_cols=48 Identities=17% Similarity=0.076 Sum_probs=41.8
Q ss_pred CCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCch
Q 003854 357 SQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 407 (791)
Q Consensus 357 ~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~ 407 (791)
..||++-|+|+-+ +|...+..+||-|++..-=|.---.|.|.||+...
T Consensus 139 ~~Lp~~Svii~f~---nE~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 139 DKLPTTSVIIIFH---NEAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred cccCCCceEEEEe---cCCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 4699999999999 99999999999999988766656678999997665
No 152
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=29.67 E-value=21 Score=33.12 Aligned_cols=40 Identities=23% Similarity=0.559 Sum_probs=25.4
Q ss_pred ccccccccccc-CCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccc
Q 003854 39 CQICEDEIEIT-DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (791)
Q Consensus 39 C~iCgd~vg~~-~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Y 88 (791)
|.+||...+.. ..-+.|.-+ ...+.|--|++ .||+|++.|
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~-G~~~~v~~~~~---------~C~~CGe~~ 41 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYK-GESITIGVPGW---------YCPACGEEL 41 (127)
T ss_pred CCCCCCccceeeeecceEEEc-CEEEEEeeeee---------ECCCCCCEE
Confidence 88999654433 334445455 35555555555 799999988
No 153
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=29.52 E-value=14 Score=26.13 Aligned_cols=13 Identities=31% Similarity=0.869 Sum_probs=6.6
Q ss_pred hhcCCCCCCCccc
Q 003854 75 REGNQACPQCKTR 87 (791)
Q Consensus 75 keG~q~CPqCKt~ 87 (791)
.++.+.||+|+++
T Consensus 10 ~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 10 EDDAKFCPNCGTP 22 (23)
T ss_pred CCcCcchhhhCCc
Confidence 3444555555543
No 154
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=29.30 E-value=2.3e+02 Score=28.37 Aligned_cols=74 Identities=23% Similarity=0.206 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCcccccccccccccccCChh
Q 003854 376 PLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPA 455 (791)
Q Consensus 376 p~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~YFs~~~d~~~~k~~~~ 455 (791)
--.+..|++..++..|-.+.+.+||.|=.++.+ ..+.+ --.+. ......+
T Consensus 51 KS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~~l--~~~~~-------------~~~~~---------------~~~~~~~ 100 (205)
T PF01580_consen 51 KSTLLRTLLLSLALTYSPDDVQLYIIDPKGSDL--APLAD-------------LPHVA---------------AVAVATD 100 (205)
T ss_dssp HHHHHHHHHHHHHTT--TTTEEEEEE-TTSSCC--GGGTT--------------TTBS---------------S-S-B-S
T ss_pred ccHHHHHHHHHHHHHhcCCccEEEEEcCCcccc--chhhh-------------hhhhc---------------ccccccc
Confidence 345667788888888888899999999886642 22211 00000 0001123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 003854 456 FVRERRAIKREYEEFKIRINALVA 479 (791)
Q Consensus 456 f~~err~mKreYee~k~rI~~L~~ 479 (791)
..+=.+.++..++||+.|.+.+.+
T Consensus 101 ~~~~~~~l~~l~~em~~R~~~l~~ 124 (205)
T PF01580_consen 101 PEEILRLLEELVEEMERRQALLRE 124 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456788899999999977754
No 155
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=29.25 E-value=38 Score=28.78 Aligned_cols=13 Identities=38% Similarity=0.869 Sum_probs=10.4
Q ss_pred ccccccccccccC
Q 003854 38 TCQICEDEIEITD 50 (791)
Q Consensus 38 ~C~iCgd~vg~~~ 50 (791)
.|..||..|.+..
T Consensus 4 ~CP~CG~~iev~~ 16 (54)
T TIGR01206 4 ECPDCGAEIELEN 16 (54)
T ss_pred CCCCCCCEEecCC
Confidence 7889999887753
No 156
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=28.97 E-value=25 Score=43.36 Aligned_cols=52 Identities=17% Similarity=0.561 Sum_probs=34.8
Q ss_pred ccccCCCCc-eeecCCCCCCc-chhh---HHHHHhhcCCCCCCCccccccccCCCCc
Q 003854 46 IEITDNGEP-FVACNECAFPV-CRPC---YEYERREGNQACPQCKTRYKRLKGSPRV 97 (791)
Q Consensus 46 vg~~~~Ge~-fvaC~eC~Fpv-Cr~C---yeyerkeG~q~CPqCKt~Ykr~kGsprv 97 (791)
|.++-+|=- |+.|++|++.. |+.| +.|-+..+.-.|.+|+...+...-||.=
T Consensus 425 lflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~C 481 (730)
T COG1198 425 LFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPEC 481 (730)
T ss_pred EEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCC
Confidence 556667875 89999998753 6667 3344556666777777776666666553
No 157
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=28.79 E-value=24 Score=26.78 Aligned_cols=24 Identities=38% Similarity=0.996 Sum_probs=11.9
Q ss_pred ccccccccccccCCCCceeecCCCCC
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAF 63 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~F 63 (791)
.|..|+.+-.+ +||.+|| |.+|++
T Consensus 4 ~Cp~C~se~~y-~D~~~~v-Cp~C~~ 27 (30)
T PF08274_consen 4 KCPLCGSEYTY-EDGELLV-CPECGH 27 (30)
T ss_dssp --TTT-----E-E-SSSEE-ETTTTE
T ss_pred CCCCCCCccee-ccCCEEe-CCcccc
Confidence 57888887666 7777766 878875
No 158
>PRK14873 primosome assembly protein PriA; Provisional
Probab=28.51 E-value=40 Score=41.08 Aligned_cols=11 Identities=27% Similarity=0.887 Sum_probs=6.3
Q ss_pred CCCCCCCcccc
Q 003854 78 NQACPQCKTRY 88 (791)
Q Consensus 78 ~q~CPqCKt~Y 88 (791)
...||.|+...
T Consensus 422 p~~Cp~Cgs~~ 432 (665)
T PRK14873 422 DWRCPRCGSDR 432 (665)
T ss_pred CccCCCCcCCc
Confidence 35666666543
No 159
>PTZ00293 thymidine kinase; Provisional
Probab=28.18 E-value=28 Score=36.81 Aligned_cols=35 Identities=20% Similarity=0.626 Sum_probs=22.6
Q ss_pred ccccccccccc----ccCCCCc-eeecCCCCCCcchhhHH
Q 003854 37 QTCQICEDEIE----ITDNGEP-FVACNECAFPVCRPCYE 71 (791)
Q Consensus 37 ~~C~iCgd~vg----~~~~Ge~-fvaC~eC~FpvCr~Cye 71 (791)
.+|..||.+-- +.++|+. .+-=+|=--++||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 58999998833 3334444 23223445789999995
No 160
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=28.10 E-value=54 Score=28.74 Aligned_cols=48 Identities=29% Similarity=0.630 Sum_probs=33.3
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcC-CCCCCCc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN-QACPQCK 85 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~-q~CPqCK 85 (791)
..+|..||-.|-..+.+-.| +|..|+=-+=.-|- --||-|+ -.||.|+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F-~CPnCGe~~I~Rc~-~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKF-PCPNCGEVEIYRCA-KCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEe-eCCCCCceeeehhh-hHHHcCCceECCCcC
Confidence 35899999999887777655 69999933322232 2357676 5799886
No 161
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=27.90 E-value=40 Score=30.07 Aligned_cols=31 Identities=32% Similarity=0.857 Sum_probs=24.1
Q ss_pred cCCccccccccc--cc-ccCCCCceeecCCCCCC
Q 003854 34 LSGQTCQICEDE--IE-ITDNGEPFVACNECAFP 64 (791)
Q Consensus 34 ~~~~~C~iCgd~--vg-~~~~Ge~fvaC~eC~Fp 64 (791)
..|-+|.-|+.- |. ..++|...+-|-+|+|-
T Consensus 6 IAGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 6 IAGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred ecCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 356789999854 44 46889999999999984
No 162
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.43 E-value=36 Score=37.50 Aligned_cols=22 Identities=27% Similarity=0.827 Sum_probs=17.2
Q ss_pred ccCCcccccccccccccCCCCceeecCCCC
Q 003854 33 ELSGQTCQICEDEIEITDNGEPFVACNECA 62 (791)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~ 62 (791)
..++..|..||+- -|++|-.|+
T Consensus 226 ~~~~~~C~~CGg~--------rFlpC~~C~ 247 (281)
T KOG2824|consen 226 CEGGGVCESCGGA--------RFLPCSNCH 247 (281)
T ss_pred CCCCCcCCCcCCc--------ceEecCCCC
Confidence 5566899999854 789998884
No 163
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=27.23 E-value=17 Score=26.07 Aligned_cols=15 Identities=27% Similarity=0.731 Sum_probs=10.1
Q ss_pred HHhhcCCCCCCCccc
Q 003854 73 ERREGNQACPQCKTR 87 (791)
Q Consensus 73 erkeG~q~CPqCKt~ 87 (791)
+..++...||.|+++
T Consensus 11 ~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 11 EIDPDAKFCPNCGAK 25 (26)
T ss_pred cCCcccccChhhCCC
Confidence 335666778888765
No 164
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=26.65 E-value=43 Score=25.72 Aligned_cols=31 Identities=23% Similarity=0.555 Sum_probs=23.0
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHH
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE 73 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeye 73 (791)
...|..|++.. +-.-|.+|..++|..|....
T Consensus 3 ~~~C~~H~~~~-------~~~~C~~C~~~~C~~C~~~~ 33 (42)
T PF00643_consen 3 EPKCPEHPEEP-------LSLFCEDCNEPLCSECTVSG 33 (42)
T ss_dssp SSB-SSTTTSB-------EEEEETTTTEEEEHHHHHTS
T ss_pred CccCccCCccc-------eEEEecCCCCccCccCCCCC
Confidence 45787777542 55779999999999999653
No 165
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=26.62 E-value=22 Score=33.86 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=15.9
Q ss_pred eecCCCCCCcchhhHHHHHhhcC-CCCCCCccccc
Q 003854 56 VACNECAFPVCRPCYEYERREGN-QACPQCKTRYK 89 (791)
Q Consensus 56 vaC~eC~FpvCr~CyeyerkeG~-q~CPqCKt~Yk 89 (791)
.-|+.|+. +++..+-. -.||+|+.+-.
T Consensus 71 ~~C~~Cg~-------~~~~~~~~~~~CP~Cgs~~~ 98 (114)
T PRK03681 71 CWCETCQQ-------YVTLLTQRVRRCPQCHGDML 98 (114)
T ss_pred EEcccCCC-------eeecCCccCCcCcCcCCCCc
Confidence 44666662 34443333 46999997643
No 166
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=26.04 E-value=34 Score=36.24 Aligned_cols=26 Identities=38% Similarity=0.879 Sum_probs=19.6
Q ss_pred Cccccccccccccc----CCCCceeecCCCCCCcchhhHH
Q 003854 36 GQTCQICEDEIEIT----DNGEPFVACNECAFPVCRPCYE 71 (791)
Q Consensus 36 ~~~C~iCgd~vg~~----~~Ge~fvaC~eC~FpvCr~Cye 71 (791)
..+|..||+-++-. .||+ |||++||+
T Consensus 172 ~v~C~kCGE~~~e~~~~~~ng~----------~vC~~C~~ 201 (206)
T COG2191 172 SVRCSKCGELFMEPRAVVLNGK----------PVCKPCAE 201 (206)
T ss_pred eeeccccCcccccchhhhcCCc----------eecccccc
Confidence 35999999986643 3666 68999985
No 167
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=26.04 E-value=53 Score=23.92 Aligned_cols=24 Identities=33% Similarity=0.946 Sum_probs=13.3
Q ss_pred cccccccccccCCCCceeecCCCCC
Q 003854 39 CQICEDEIEITDNGEPFVACNECAF 63 (791)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~F 63 (791)
|..||-.|--.+.|..| .|..|+|
T Consensus 1 C~sC~~~i~~r~~~v~f-~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPF-PCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceE-eCCCCCC
Confidence 55666665443444444 4777765
No 168
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.68 E-value=27 Score=30.66 Aligned_cols=17 Identities=47% Similarity=1.036 Sum_probs=14.5
Q ss_pred HhhcCCCCCCCcccccc
Q 003854 74 RREGNQACPQCKTRYKR 90 (791)
Q Consensus 74 rkeG~q~CPqCKt~Ykr 90 (791)
-++|.-.||=|.|+||-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 46888999999999973
No 169
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=25.61 E-value=27 Score=33.32 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=11.9
Q ss_pred HHHhhcCCCCCCCcccccc
Q 003854 72 YERREGNQACPQCKTRYKR 90 (791)
Q Consensus 72 yerkeG~q~CPqCKt~Ykr 90 (791)
++..+-...||+|+.+-.+
T Consensus 80 ~~~~~~~~~CP~Cgs~~~~ 98 (115)
T TIGR00100 80 VSPEIDLYRCPKCHGIMLQ 98 (115)
T ss_pred EecCCcCccCcCCcCCCcE
Confidence 4443335679999986533
No 170
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=25.47 E-value=1.2e+02 Score=36.38 Aligned_cols=44 Identities=23% Similarity=0.132 Sum_probs=35.5
Q ss_pred CCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCC
Q 003854 358 QLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDG 404 (791)
Q Consensus 358 ~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG 404 (791)
.++.+=.+||+| +|..+-+..|+=|+...+||..+--+.|.=||
T Consensus 23 ~~~~~i~~v~cy---~E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG 66 (527)
T PF03142_consen 23 PDKFVICLVPCY---SEGEEELRTTLDSLATTDYDDSRKLIFVICDG 66 (527)
T ss_pred CCceEEEEEccc---cCChHHHHHHHHHHHhcCCCCcccEEEEEcCc
Confidence 456677899999 99999999999999999999974444444454
No 171
>PF04641 Rtf2: Rtf2 RING-finger
Probab=25.28 E-value=60 Score=34.81 Aligned_cols=50 Identities=20% Similarity=0.494 Sum_probs=37.4
Q ss_pred CCcccccccccccccCCCC-ceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 35 SGQTCQICEDEIEITDNGE-PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge-~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
..-+|.|++..+ +|. -||+=--||=-+|..|.+-- + ....||.|.++|..
T Consensus 112 ~~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 112 GRFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTE 162 (260)
T ss_pred ceeECCCCCccc----CCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCcccc
Confidence 344899998775 454 58887888888888888444 4 34679999999963
No 172
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.04 E-value=34 Score=40.16 Aligned_cols=44 Identities=30% Similarity=0.778 Sum_probs=0.0
Q ss_pred ccccccccccccCCCCceeecCCCCCCc----------chhhHHHHHhhcCCCCCCCccccccccC
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPV----------CRPCYEYERREGNQACPQCKTRYKRLKG 93 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~Fpv----------Cr~CyeyerkeG~q~CPqCKt~Ykr~kG 93 (791)
.|.-||.. +-|..|.-+. |.-|- |..+-- ..||.|+...-+..|
T Consensus 215 ~C~~Cg~~----------~~C~~C~~~l~~h~~~~~l~Ch~Cg-~~~~~~-~~Cp~C~s~~l~~~g 268 (505)
T TIGR00595 215 LCRSCGYI----------LCCPNCDVSLTYHKKEGKLRCHYCG-YQEPIP-KTCPQCGSEDLVYKG 268 (505)
T ss_pred EhhhCcCc----------cCCCCCCCceEEecCCCeEEcCCCc-CcCCCC-CCCCCCCCCeeEeec
No 173
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=24.87 E-value=1.3e+02 Score=34.17 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=35.2
Q ss_pred hhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc------------cCC-------CCcceEEEecCcccc
Q 003854 547 GAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM------------DPQ-------SGKKICYVQFPQRFD 606 (791)
Q Consensus 547 GalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl------------Dp~-------~g~~vafVQtPQ~F~ 606 (791)
..+-++|+. + +.+++|+.|||+=.-+++.+++.+-.+. |+. ....+-.|||||-|.
T Consensus 85 ~SV~~gL~~---l-~~d~VLVhdadrPfv~~e~I~~li~~~~~~~a~i~~~pv~Dtik~~~~tldR~~l~~~QTPQ~f~ 159 (378)
T PRK09382 85 ESVRNALEA---L-DSEYVLIHDAARPFVPKELIDRLIEALDKADCVLPALPVADTLKRANETVDREGLKLIQTPQLSR 159 (378)
T ss_pred HHHHHHHHh---c-CCCeEEEeeccccCCCHHHHHHHHHHhhcCCeEEEEEEeccCcEEeeeEcCcccEEEEECCCCCC
Confidence 334445543 1 3489999999984457788776654332 210 113567789999994
No 174
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=24.81 E-value=33 Score=29.96 Aligned_cols=28 Identities=25% Similarity=0.738 Sum_probs=20.7
Q ss_pred CcccccccccccccCCCCceeecCCCCCCc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPV 65 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~Fpv 65 (791)
--+|.-||.+-.+. .|+ .+-|.||+|.|
T Consensus 20 iYiCgdC~~en~lk-~~D-~irCReCG~RI 47 (62)
T KOG3507|consen 20 IYICGDCGQENTLK-RGD-VIRCRECGYRI 47 (62)
T ss_pred EEEecccccccccc-CCC-cEehhhcchHH
Confidence 34899999886553 344 46799999976
No 175
>PRK08359 transcription factor; Validated
Probab=24.68 E-value=25 Score=36.28 Aligned_cols=30 Identities=40% Similarity=0.884 Sum_probs=19.3
Q ss_pred ccccccccccccc-----CCCCceeecCCCCCCcchhhH-HHHH
Q 003854 37 QTCQICEDEIEIT-----DNGEPFVACNECAFPVCRPCY-EYER 74 (791)
Q Consensus 37 ~~C~iCgd~vg~~-----~~Ge~fvaC~eC~FpvCr~Cy-eyer 74 (791)
..|.|||.+|--. .+|-. .-||..|| .|-.
T Consensus 7 ~~CEiCG~~i~g~~~~v~ieGae--------l~VC~~Ca~k~G~ 42 (176)
T PRK08359 7 RYCEICGAEIRGPGHRIRIEGAE--------LLVCDRCYEKYGR 42 (176)
T ss_pred ceeecCCCccCCCCeEEEEcCeE--------EehHHHHHHHhCC
Confidence 3599999997321 23433 45778888 6644
No 176
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.55 E-value=39 Score=33.65 Aligned_cols=44 Identities=27% Similarity=0.693 Sum_probs=35.3
Q ss_pred CCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcc
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKT 86 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt 86 (791)
....|.||=+..--. ....|+--.|+.|-+.-.. +.-.||.|+.
T Consensus 12 ~~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 344899998885443 5667899999999988777 7789999993
No 177
>PF12773 DZR: Double zinc ribbon
Probab=24.42 E-value=49 Score=26.41 Aligned_cols=12 Identities=17% Similarity=0.595 Sum_probs=7.6
Q ss_pred Cccccccccccc
Q 003854 36 GQTCQICEDEIE 47 (791)
Q Consensus 36 ~~~C~iCgd~vg 47 (791)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 446777776665
No 178
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=24.03 E-value=51 Score=24.37 Aligned_cols=28 Identities=36% Similarity=0.950 Sum_probs=21.0
Q ss_pred ccccccccccccCCCCceeecCCCCCCcchhh
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPC 69 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~C 69 (791)
.|.+|+.++ +|..|--|.+|.|-+..-|
T Consensus 2 ~C~~C~~~~----~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKI----DGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCc----CCCEeEEeCCCCCeEcCcc
Confidence 589998764 3433899999999876655
No 179
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=24.01 E-value=44 Score=41.88 Aligned_cols=56 Identities=25% Similarity=0.538 Sum_probs=32.3
Q ss_pred CCccccccccc--cccc-CCCCceeecCCCCCCcchhhHHHHH-----------hhcCCCCCCCccccccccC
Q 003854 35 SGQTCQICEDE--IEIT-DNGEPFVACNECAFPVCRPCYEYER-----------REGNQACPQCKTRYKRLKG 93 (791)
Q Consensus 35 ~~~~C~iCgd~--vg~~-~~Ge~fvaC~eC~FpvCr~Cyeyer-----------keG~q~CPqCKt~Ykr~kG 93 (791)
....|..||.. +... -.| .|++|. +||-|+-=....+ ......||.|+......+|
T Consensus 591 ~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~g 660 (860)
T PRK06319 591 TEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRHG 660 (860)
T ss_pred cCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEecC
Confidence 44689999864 2222 345 699994 5777742111111 1124589999876665444
No 180
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=23.86 E-value=36 Score=33.96 Aligned_cols=43 Identities=33% Similarity=0.777 Sum_probs=25.6
Q ss_pred CCcccccccccccccCCCCceeecCCCCCCcchhhHHHH-HhhcCCCCCCCcc
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKT 86 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeye-rkeG~q~CPqCKt 86 (791)
.+..|..||+ .-||+|.+|.= -||--.+.. ...+-.-||.|++
T Consensus 98 ~~~~C~~Cgg--------~rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCGG--------ARFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCCC--------cCeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 4557999984 47999988852 222211110 1133468999886
No 181
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=23.73 E-value=55 Score=37.57 Aligned_cols=35 Identities=29% Similarity=0.637 Sum_probs=22.8
Q ss_pred ceeecCCCCCCcchhhHHHHHhhc-CCCCCCCcccccccc
Q 003854 54 PFVACNECAFPVCRPCYEYERREG-NQACPQCKTRYKRLK 92 (791)
Q Consensus 54 ~fvaC~eC~FpvCr~CyeyerkeG-~q~CPqCKt~Ykr~k 92 (791)
..++|+||+.-+=+| ..+.| .-.||+|++.--|++
T Consensus 12 ~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~~ 47 (403)
T TIGR00155 12 KHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVGW 47 (403)
T ss_pred CeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCCC
Confidence 367899998764332 11223 346999999987653
No 182
>TIGR02556 cas_TM1802 CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.
Probab=23.08 E-value=51 Score=39.47 Aligned_cols=41 Identities=29% Similarity=0.639 Sum_probs=24.1
Q ss_pred CcccccccccccccCCC----------Cceee--cCCCCCCcchhhHHHHHhhc
Q 003854 36 GQTCQICEDEIEITDNG----------EPFVA--CNECAFPVCRPCYEYERREG 77 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~G----------e~fva--C~eC~FpvCr~CyeyerkeG 77 (791)
+.+|.|||.+--++.+- .-|++ =.-=.||||+.||.+ ...|
T Consensus 170 ~g~C~iCg~~~~~v~~~~~fKfyT~DK~gf~sgk~~~knfpIC~eC~~~-l~~G 222 (555)
T TIGR02556 170 SGTCHLCGERSDITYDSFVYKFYTTDKPGFSSDKGFSKNFSICRDCYKD-VIYG 222 (555)
T ss_pred ceEEeccCCCCceeccceeeeeeecCCCcccCCccccccCchhHHHHHH-HHHH
Confidence 57999999973322221 11222 112269999999954 3455
No 183
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.07 E-value=33 Score=32.61 Aligned_cols=43 Identities=33% Similarity=0.577 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccCccccCC-------CCCCCCCcCCCccceeeeccCCC
Q 003854 464 KREYEEFKIRINALVATAQKVPEEGWTMQDG-------TPWPGNNVRDHPGMIQVFLGQSG 517 (791)
Q Consensus 464 KreYee~k~rI~~L~~k~~~~~~~~w~m~dg-------t~w~g~~~rdHp~iiqV~~~~~g 517 (791)
|-||+|+|..- .++|+|+|- +.|.-.+--.||.+.+-|--.+|
T Consensus 20 k~eyqel~~~~-----------~d~W~m~Dlk~k~~~~sd~tiknlL~hPrl~k~L~ieng 69 (107)
T COG4707 20 KVEYQELKEKD-----------FDGWVMMDLKEKKSNRSDWTIKNLLLHPRLKKMLSIENG 69 (107)
T ss_pred HHHHHHHHHhh-----------hcchhhhHHHHHhcccchhHHHHHhcCchhhhheeeecC
Confidence 56999988522 368998875 22322223368887776654555
No 184
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=22.79 E-value=1.1e+02 Score=25.19 Aligned_cols=45 Identities=33% Similarity=0.690 Sum_probs=28.5
Q ss_pred ccccccccccccCCCCceeecCCCCC---CcchhhHHHHHh-hcCCCCCCCc
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAF---PVCRPCYEYERR-EGNQACPQCK 85 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~F---pvCr~Cyeyerk-eG~q~CPqCK 85 (791)
+|.||-+ +-+++..++.+| .|.- -|=+.|.+.=+. .++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5899987 344445567788 4542 244567765544 4467899996
No 185
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=22.71 E-value=87 Score=34.56 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=28.4
Q ss_pred hhhhhhhhhhcCCCCCCCcceeEEEecCCCCCCCHHHHHHHH
Q 003854 342 YLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTV 383 (791)
Q Consensus 342 ~~drL~~r~e~~~~~~~LP~VDVFV~T~DP~kEPp~vt~nTV 383 (791)
.++.|.+-++.-.....+|.|=|||+ +||+..++.++.+-|
T Consensus 158 ELeKm~~~Vd~i~~~~~~~~~PlFIs-vDPeRD~~~~~~eY~ 198 (280)
T KOG2792|consen 158 ELEKMSAVVDEIEAKPGLPPVPLFIS-VDPERDSVEVVAEYV 198 (280)
T ss_pred HHHHHHHHHHHHhccCCCCccceEEE-eCcccCCHHHHHHHH
Confidence 46666666643223346777879986 699999999887743
No 186
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.57 E-value=26 Score=34.31 Aligned_cols=15 Identities=27% Similarity=0.851 Sum_probs=9.9
Q ss_pred cCCCCCCCccc-cccc
Q 003854 77 GNQACPQCKTR-YKRL 91 (791)
Q Consensus 77 G~q~CPqCKt~-Ykr~ 91 (791)
..-.||+|+.+ ++-.
T Consensus 106 ~~~~CP~Cgs~~~~i~ 121 (135)
T PRK03824 106 AFLKCPKCGSRDFEIV 121 (135)
T ss_pred cCcCCcCCCCCCcEEe
Confidence 34569999976 4433
No 187
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=22.55 E-value=36 Score=26.37 Aligned_cols=11 Identities=45% Similarity=1.404 Sum_probs=9.7
Q ss_pred CCCCCcccccc
Q 003854 80 ACPQCKTRYKR 90 (791)
Q Consensus 80 ~CPqCKt~Ykr 90 (791)
.||.|++.|+-
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 59999999965
No 188
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=22.41 E-value=39 Score=27.42 Aligned_cols=37 Identities=19% Similarity=0.510 Sum_probs=29.4
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHh
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERR 75 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeyerk 75 (791)
.+.|.+|+...++..+. .-|.-|+--+|..|..+...
T Consensus 2 ~~~C~~C~~~F~~~~rk---~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 2 ASSCMGCGKPFTLTRRR---HHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcCcccCccccCCccc---cccCcCcCCcChHHcCCeee
Confidence 45799999998874432 67999999999999987755
No 189
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=22.28 E-value=37 Score=32.90 Aligned_cols=52 Identities=23% Similarity=0.611 Sum_probs=33.1
Q ss_pred cCCccccccccc--ccccCCC-CceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 34 LSGQTCQICEDE--IEITDNG-EPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 34 ~~~~~C~iCgd~--vg~~~~G-e~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
..+..|.-||.. |....++ -.|..| +.||.|+-=.- .+-..+.||+|.-+..
T Consensus 58 ~~~~~Cp~C~~~~~~~k~~~~~~~f~~~--~~~Pkc~~~~~--~~~~~~~cp~c~~~~~ 112 (140)
T COG0551 58 KTGVKCPKCGKGLLVLKKGRFGKNFLGC--SNYPKCRFTEK--PKPKEKKCPKCGSRKL 112 (140)
T ss_pred cCceeCCCCCCCceEEEeccCCceEEee--cCCCcCceeec--CCcccccCCcCCCcee
Confidence 345688889943 3333333 379999 79999985332 2333345999997444
No 190
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=22.16 E-value=35 Score=24.96 Aligned_cols=17 Identities=29% Similarity=0.753 Sum_probs=12.1
Q ss_pred HHhhcCCCCCCCccccc
Q 003854 73 ERREGNQACPQCKTRYK 89 (791)
Q Consensus 73 erkeG~q~CPqCKt~Yk 89 (791)
+.....+.||.|+-.|+
T Consensus 9 ~V~~~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 9 EVPESAKFCPHCGYDFE 25 (26)
T ss_pred CchhhcCcCCCCCCCCc
Confidence 34667788888887664
No 191
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.11 E-value=44 Score=43.44 Aligned_cols=48 Identities=23% Similarity=0.614 Sum_probs=30.5
Q ss_pred cccccccccccccCCCCceeecCCCCCCc-----chhhHHHHH--hhcCCCCCCCccccccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFPV-----CRPCYEYER--REGNQACPQCKTRYKRL 91 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~Fpv-----Cr~Cyeyer--keG~q~CPqCKt~Ykr~ 91 (791)
..|.-||..+-- .-|.+|+-+. |..|=-.-- ..+...||.|+++-...
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 478888886422 2688888664 777753211 12355799999877543
No 192
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=21.47 E-value=48 Score=33.50 Aligned_cols=44 Identities=32% Similarity=0.795 Sum_probs=31.8
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcch-hhHHHHHhhcCCCCCCCccccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCR-PCYEYERREGNQACPQCKTRYKRL 91 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr-~CyeyerkeG~q~CPqCKt~Ykr~ 91 (791)
.++|-||-..+ .-.-|.-|.||-|. +||.-- +.=|||+|+=+..
T Consensus 5 t~tC~ic~e~~-------~KYKCpkC~vPYCSl~CfKiH-----k~tPq~~~ve~~~ 49 (157)
T KOG2857|consen 5 TTTCVICLESE-------IKYKCPKCSVPYCSLPCFKIH-----KSTPQCETVEDNN 49 (157)
T ss_pred eeeehhhhcch-------hhccCCCCCCccccchhhhhc-----cCCccccccCCcc
Confidence 46888887653 23679999999996 898543 4478998876544
No 193
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=21.20 E-value=44 Score=29.51 Aligned_cols=23 Identities=22% Similarity=0.592 Sum_probs=16.8
Q ss_pred ceeecCCCCCCcchhhHHHHHhhcCCCCCCCccc
Q 003854 54 PFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (791)
Q Consensus 54 ~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~ 87 (791)
.|.||.+|.+-+ ++ +.||-|+..
T Consensus 4 ~~~AC~~C~~i~----------~~-~~Cp~Cgs~ 26 (64)
T PRK06393 4 QYRACKKCKRLT----------PE-KTCPVHGDE 26 (64)
T ss_pred hhhhHhhCCccc----------CC-CcCCCCCCC
Confidence 367788887766 23 499999974
No 194
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=20.86 E-value=41 Score=26.04 Aligned_cols=11 Identities=36% Similarity=1.310 Sum_probs=9.4
Q ss_pred CCCCCcccccc
Q 003854 80 ACPQCKTRYKR 90 (791)
Q Consensus 80 ~CPqCKt~Ykr 90 (791)
.||+|++.|.-
T Consensus 4 ~Cp~C~~~y~i 14 (36)
T PF13717_consen 4 TCPNCQAKYEI 14 (36)
T ss_pred ECCCCCCEEeC
Confidence 59999999954
No 195
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=20.52 E-value=1.8e+02 Score=36.84 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=24.1
Q ss_pred CCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCcccc
Q 003854 561 NAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFD 606 (791)
Q Consensus 561 ngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~ 606 (791)
+..|.|.-|..-.|+-+ ..+ -.|-+=|+..+.|+|...|..=.
T Consensus 271 e~~~~i~~~gtl~i~g~-~~r--W~i~ViPD~pP~Ia~~~~Pe~~~ 313 (851)
T TIGR02302 271 NRHYRITKDGTLRVAGS-SAP--WSFTATPDKPPAIAFAKEPQRQA 313 (851)
T ss_pred cceEEEecCCeEEeccC-CCc--eEEEEecCCCCeeeecCCCCcCC
Confidence 34566666665544222 222 33444555667888888886643
No 196
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=20.41 E-value=78 Score=25.41 Aligned_cols=29 Identities=28% Similarity=0.771 Sum_probs=23.2
Q ss_pred ccccccccccccCCCCceeecCCC-CCCcchhhHH
Q 003854 38 TCQICEDEIEITDNGEPFVACNEC-AFPVCRPCYE 71 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC-~FpvCr~Cye 71 (791)
.|..|+..| .| ....|.+| .|-+|..||.
T Consensus 2 ~Cd~C~~~i----~G-~ry~C~~C~d~dLC~~C~~ 31 (43)
T cd02340 2 ICDGCQGPI----VG-VRYKCLVCPDYDLCESCEA 31 (43)
T ss_pred CCCCCCCcC----cC-CeEECCCCCCccchHHhhC
Confidence 588898743 35 56789999 7999999994
No 197
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.35 E-value=80 Score=33.06 Aligned_cols=45 Identities=27% Similarity=0.733 Sum_probs=35.2
Q ss_pred cccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~ 87 (791)
-.|.||=+.+-- .+-|+= +||---|+.|-+..+|.++ .||-|..+
T Consensus 132 ~~CPiCl~~~se----k~~vsT-kCGHvFC~~Cik~alk~~~-~CP~C~kk 176 (187)
T KOG0320|consen 132 YKCPICLDSVSE----KVPVST-KCGHVFCSQCIKDALKNTN-KCPTCRKK 176 (187)
T ss_pred cCCCceecchhh----cccccc-ccchhHHHHHHHHHHHhCC-CCCCcccc
Confidence 578888776533 233544 8999999999999999995 89999873
Done!