Query 003854
Match_columns 791
No_of_seqs 329 out of 864
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 06:13:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1weo_A Cellulose synthase, cat 100.0 1.1E-44 3.8E-49 319.3 8.2 84 28-111 8-91 (93)
2 4hg6_A Cellulose synthase subu 99.9 1.3E-26 4.3E-31 269.9 21.5 257 282-655 65-338 (802)
3 2z86_A Chondroitin synthase; G 99.1 1.3E-10 4.4E-15 129.9 12.1 127 357-608 90-217 (625)
4 1qg8_A Protein (spore coat pol 98.9 6.9E-10 2.3E-14 108.5 6.3 161 360-649 1-168 (255)
5 1xhb_A Polypeptide N-acetylgal 98.9 5.2E-09 1.8E-13 113.3 11.4 115 356-589 25-141 (472)
6 2ffu_A Ppgalnact-2, polypeptid 98.9 2.2E-09 7.6E-14 117.6 8.4 113 356-590 62-174 (501)
7 2d7i_A Polypeptide N-acetylgal 98.9 2.4E-09 8.2E-14 120.3 8.9 116 357-590 109-224 (570)
8 3bcv_A Putative glycosyltransf 98.9 3.4E-09 1.2E-13 102.4 8.6 110 358-590 3-112 (240)
9 2z86_A Chondroitin synthase; G 98.6 4.2E-08 1.4E-12 109.7 9.1 166 357-654 372-541 (625)
10 3ckj_A Putative uncharacterize 98.5 9.4E-08 3.2E-12 99.6 5.4 53 543-603 117-170 (329)
11 3l7i_A Teichoic acid biosynthe 98.2 1.3E-07 4.4E-12 108.8 0.0 111 359-590 1-111 (729)
12 3f1y_A Mannosyl-3-phosphoglyce 97.9 9.8E-06 3.4E-10 87.8 6.1 50 544-601 166-216 (387)
13 4fix_A UDP-galactofuranosyl tr 97.8 1.4E-05 4.9E-10 92.0 6.8 63 529-601 242-304 (657)
14 1e4u_A Transcriptional repress 96.3 0.0055 1.9E-07 52.7 5.9 52 36-90 11-62 (78)
15 1fo8_A Alpha-1,3-mannosyl-glyc 95.1 0.029 9.8E-07 60.4 6.8 44 359-407 1-44 (343)
16 2bo4_A Mannosylglycerate synth 94.2 0.31 1E-05 53.3 12.2 42 543-588 74-119 (397)
17 2nxv_A ATP synthase subunits r 93.9 0.11 3.8E-06 51.8 7.4 39 546-589 63-101 (249)
18 1vyx_A ORF K3, K3RING; zinc-bi 89.4 0.34 1.2E-05 39.7 4.1 50 35-89 5-58 (60)
19 2ea6_A Ring finger protein 4; 88.8 0.46 1.6E-05 37.9 4.5 54 35-90 14-68 (69)
20 2zu9_A Mannosyl-3-phosphoglyce 87.9 1.3 4.5E-05 48.8 8.7 36 544-582 144-179 (394)
21 2d8s_A Cellular modulator of i 87.7 0.66 2.2E-05 40.0 5.1 55 33-90 12-70 (80)
22 2fy7_A Beta-1,4-galactosyltran 87.5 0.51 1.8E-05 49.1 5.1 39 359-403 64-105 (287)
23 3ng2_A RNF4, snurf, ring finge 87.4 0.32 1.1E-05 39.3 2.8 55 34-90 8-63 (71)
24 1t1h_A Gspef-atpub14, armadill 86.1 0.5 1.7E-05 39.0 3.3 47 36-89 8-54 (78)
25 1g25_A CDK-activating kinase a 85.9 0.71 2.4E-05 37.0 4.0 53 36-90 3-55 (65)
26 2ckl_B Ubiquitin ligase protei 85.8 0.54 1.8E-05 44.5 3.8 48 37-90 55-102 (165)
27 2xeu_A Ring finger protein 4; 85.5 0.36 1.2E-05 37.9 2.1 53 36-90 3-56 (64)
28 2ect_A Ring finger protein 126 83.8 2.5 8.7E-05 34.7 6.6 53 34-91 13-65 (78)
29 2ecm_A Ring finger and CHY zin 83.4 1.2 4.2E-05 34.0 4.2 50 35-88 4-53 (55)
30 1iym_A EL5; ring-H2 finger, ub 83.4 1.3 4.6E-05 33.9 4.5 49 36-88 5-53 (55)
31 2ysl_A Tripartite motif-contai 83.3 0.87 3E-05 36.9 3.5 48 36-90 20-69 (73)
32 3fl2_A E3 ubiquitin-protein li 82.2 0.98 3.3E-05 40.8 3.8 47 37-90 53-99 (124)
33 2ecy_A TNF receptor-associated 81.6 1.1 3.6E-05 36.0 3.4 48 36-90 15-62 (66)
34 1v87_A Deltex protein 2; ring- 81.4 1.5 5.1E-05 38.8 4.5 59 35-93 24-97 (114)
35 1chc_A Equine herpes virus-1 r 79.5 2.1 7.3E-05 34.2 4.5 49 36-91 5-53 (68)
36 2c2l_A CHIP, carboxy terminus 79.4 1.2 4.1E-05 44.5 3.6 48 35-89 207-254 (281)
37 2ct2_A Tripartite motif protei 78.3 2.3 7.9E-05 35.4 4.5 52 36-90 15-68 (88)
38 2csz_A Synaptotagmin-like prot 78.0 1.2 4.1E-05 38.9 2.7 62 10-75 1-62 (76)
39 2ecv_A Tripartite motif-contai 77.6 2.3 7.9E-05 34.9 4.3 48 36-90 19-71 (85)
40 2ecw_A Tripartite motif-contai 77.4 2.2 7.6E-05 35.0 4.1 48 36-90 19-71 (85)
41 3lrq_A E3 ubiquitin-protein li 77.4 1.9 6.5E-05 37.7 3.9 47 37-89 23-69 (100)
42 2f42_A STIP1 homology and U-bo 76.7 1.7 5.7E-05 43.1 3.7 47 36-89 106-152 (179)
43 2kiz_A E3 ubiquitin-protein li 76.7 3.2 0.00011 33.3 4.8 52 35-91 13-64 (69)
44 3l11_A E3 ubiquitin-protein li 73.3 1.2 4.2E-05 39.5 1.6 48 36-90 15-62 (115)
45 2zet_C Melanophilin; complex, 72.9 0.59 2E-05 45.3 -0.6 51 35-87 67-117 (153)
46 3hct_A TNF receptor-associated 71.9 2.6 8.8E-05 37.8 3.4 47 37-90 19-65 (118)
47 2y43_A E3 ubiquitin-protein li 71.8 3.3 0.00011 35.8 3.9 47 37-90 23-69 (99)
48 2wvl_A Mannosyl-3-phosphoglyce 71.5 9.6 0.00033 42.0 8.2 33 543-576 142-174 (391)
49 1x4j_A Ring finger protein 38; 70.9 2.6 8.9E-05 34.6 3.0 52 35-91 22-73 (75)
50 2djb_A Polycomb group ring fin 70.7 5.6 0.00019 32.3 4.9 49 36-91 15-63 (72)
51 2ep4_A Ring finger protein 24; 70.4 5 0.00017 32.6 4.6 50 36-90 15-64 (74)
52 1z6u_A NP95-like ring finger p 68.5 3.7 0.00013 38.9 3.8 47 37-90 79-125 (150)
53 2kr4_A Ubiquitin conjugation f 68.1 3.4 0.00012 35.4 3.2 46 36-89 14-59 (85)
54 1zbd_B Rabphilin-3A; G protein 67.8 2.3 8E-05 40.3 2.2 38 33-73 52-90 (134)
55 2l0b_A E3 ubiquitin-protein li 67.7 3.6 0.00012 35.4 3.2 50 35-89 39-88 (91)
56 3vk6_A E3 ubiquitin-protein li 66.8 3.2 0.00011 38.0 2.8 48 38-91 3-50 (101)
57 2gvi_A Conserved hypothetical 66.7 1.4 4.9E-05 44.1 0.6 29 34-72 170-202 (204)
58 2ecl_A Ring-box protein 2; RNF 66.6 5.4 0.00019 33.6 4.1 55 35-90 14-76 (81)
59 2kre_A Ubiquitin conjugation f 66.0 3.6 0.00012 36.6 3.0 46 36-89 29-74 (100)
60 2yur_A Retinoblastoma-binding 66.0 8 0.00027 31.7 5.0 49 36-90 15-64 (74)
61 2ckl_A Polycomb group ring fin 65.1 4.8 0.00016 35.3 3.6 48 36-90 15-62 (108)
62 1jm7_A BRCA1, breast cancer ty 64.6 5.4 0.00018 34.8 3.8 47 37-90 22-70 (112)
63 1rmd_A RAG1; V(D)J recombinati 64.0 5.7 0.00019 35.2 3.9 48 36-90 23-70 (116)
64 3hcs_A TNF receptor-associated 63.9 4.2 0.00015 38.5 3.3 47 37-90 19-65 (170)
65 2csy_A Zinc finger protein 183 63.8 10 0.00035 31.4 5.3 46 36-89 15-60 (81)
66 4ayc_A E3 ubiquitin-protein li 63.6 4.9 0.00017 37.0 3.5 45 38-90 55-99 (138)
67 2d8t_A Dactylidin, ring finger 63.2 5.9 0.0002 32.1 3.6 49 34-90 13-61 (71)
68 3ttc_A HYPF, transcriptional r 62.4 2.6 8.9E-05 49.2 1.7 53 35-88 16-99 (657)
69 4ap4_A E3 ubiquitin ligase RNF 62.3 3.7 0.00013 36.4 2.4 55 34-90 70-125 (133)
70 2ysj_A Tripartite motif-contai 61.5 7.8 0.00027 30.5 3.9 42 36-84 20-63 (63)
71 3ztg_A E3 ubiquitin-protein li 61.2 5.3 0.00018 33.8 3.1 48 36-89 13-61 (92)
72 1jm7_B BARD1, BRCA1-associated 60.6 5.3 0.00018 35.7 3.1 45 36-89 22-66 (117)
73 2ct0_A Non-SMC element 1 homol 59.9 4.7 0.00016 34.5 2.5 47 37-89 16-63 (74)
74 2egp_A Tripartite motif-contai 57.5 3.2 0.00011 34.0 1.0 48 36-90 12-65 (79)
75 2ecn_A Ring finger protein 141 57.2 6.5 0.00022 31.6 2.8 47 36-91 15-61 (70)
76 1wgm_A Ubiquitin conjugation f 56.6 7.2 0.00025 34.4 3.2 46 36-89 22-68 (98)
77 3d00_A Tungsten formylmethanof 56.5 3.2 0.00011 41.3 1.0 26 34-71 161-186 (191)
78 3h0g_L DNA-directed RNA polyme 54.7 7.6 0.00026 32.7 2.8 30 34-65 19-48 (63)
79 3dpl_R Ring-box protein 1; ubi 54.2 11 0.00039 33.9 4.1 54 35-89 36-100 (106)
80 3ky9_A Proto-oncogene VAV; cal 53.6 6.3 0.00022 44.5 2.9 36 34-72 527-563 (587)
81 4ap4_A E3 ubiquitin ligase RNF 53.2 5.9 0.0002 35.0 2.1 54 35-90 6-60 (133)
82 3nw0_A Non-structural maintena 50.7 10 0.00035 38.8 3.7 49 36-90 180-229 (238)
83 2y1n_A E3 ubiquitin-protein li 49.1 11 0.00039 41.4 3.9 47 37-90 333-379 (389)
84 2k16_A Transcription initiatio 48.5 6.4 0.00022 33.0 1.5 53 35-91 17-72 (75)
85 3vth_A Hydrogenase maturation 48.0 9.2 0.00031 45.4 3.2 57 34-91 109-196 (761)
86 2vrw_B P95VAV, VAV1, proto-onc 47.6 9.3 0.00032 40.8 2.9 35 34-71 355-390 (406)
87 1bor_A Transcription factor PM 46.1 15 0.00051 28.7 3.2 45 36-91 6-50 (56)
88 2vje_A E3 ubiquitin-protein li 46.1 9.4 0.00032 30.9 2.1 48 34-89 6-56 (64)
89 2ea5_A Cell growth regulator w 46.0 21 0.00072 29.3 4.2 45 34-90 13-58 (68)
90 2js4_A UPF0434 protein BB2007; 45.7 1.9 6.5E-05 36.8 -2.2 44 55-103 8-51 (70)
91 1xwh_A Autoimmune regulator; P 45.5 7 0.00024 32.3 1.2 50 31-87 3-55 (66)
92 2ecg_A Baculoviral IAP repeat- 44.6 13 0.00046 30.6 2.8 43 36-90 25-68 (75)
93 3knv_A TNF receptor-associated 43.8 7.2 0.00025 36.5 1.2 45 37-88 32-76 (141)
94 2ku3_A Bromodomain-containing 43.5 7.2 0.00025 33.1 1.0 56 30-87 10-66 (71)
95 1m3v_A FLIN4, fusion of the LI 43.1 18 0.00061 32.6 3.6 24 64-89 56-80 (122)
96 2xjy_A Rhombotin-2; oncoprotei 42.6 14 0.00049 33.1 2.9 46 37-88 30-76 (131)
97 1tot_A CREB-binding protein; z 41.2 9.3 0.00032 30.7 1.3 32 36-73 6-38 (52)
98 2ecj_A Tripartite motif-contai 40.2 41 0.0014 25.5 4.9 42 36-84 15-58 (58)
99 2l43_A N-teminal domain from h 39.3 11 0.00038 33.0 1.6 54 33-88 22-76 (88)
100 2hf1_A Tetraacyldisaccharide-1 38.8 2.3 7.9E-05 36.1 -2.7 43 55-102 8-50 (68)
101 3v43_A Histone acetyltransfera 38.3 25 0.00087 31.6 3.8 52 36-87 5-64 (112)
102 2co8_A NEDD9 interacting prote 37.8 20 0.0007 30.0 3.0 62 31-95 10-79 (82)
103 2kdx_A HYPA, hydrogenase/ureas 36.8 5.4 0.00019 36.4 -0.8 31 54-91 72-103 (119)
104 2l5u_A Chromodomain-helicase-D 36.4 22 0.00076 28.9 2.9 47 33-86 8-57 (61)
105 1twf_L ABC10-alpha, DNA-direct 36.1 15 0.0005 31.4 1.8 25 37-63 29-53 (70)
106 2dj7_A Actin-binding LIM prote 35.4 16 0.00054 30.7 1.9 38 29-66 8-53 (80)
107 2jny_A Uncharacterized BCR; st 35.2 4.5 0.00015 34.3 -1.5 40 64-103 14-53 (67)
108 1wim_A KIAA0161 protein; ring 34.4 23 0.00079 30.3 2.8 49 36-88 5-62 (94)
109 1rut_X Flinc4, fusion protein 33.4 24 0.00084 34.0 3.1 24 64-89 56-80 (188)
110 2jr6_A UPF0434 protein NMA0874 33.2 4.1 0.00014 34.6 -2.1 33 71-103 19-51 (68)
111 3a43_A HYPD, hydrogenase nicke 33.2 7.8 0.00027 36.6 -0.4 12 78-89 107-118 (139)
112 4g9i_A Hydrogenase maturation 33.0 14 0.00047 44.0 1.5 57 34-91 104-191 (772)
113 2yu4_A E3 SUMO-protein ligase 32.5 33 0.0011 29.6 3.5 45 37-87 8-59 (94)
114 3htk_C E3 SUMO-protein ligase 32.2 21 0.00071 37.6 2.5 50 35-90 180-232 (267)
115 2cup_A Skeletal muscle LIM-pro 31.7 24 0.00083 30.2 2.5 23 63-88 54-76 (101)
116 2orw_A Thymidine kinase; TMTK, 31.4 17 0.00058 34.9 1.6 35 37-71 138-178 (184)
117 1w4r_A Thymidine kinase; type 31.1 13 0.00045 37.1 0.8 35 37-71 152-191 (195)
118 2lri_C Autoimmune regulator; Z 29.6 33 0.0011 28.6 2.9 47 34-87 10-59 (66)
119 2cor_A Pinch protein; LIM doma 29.3 33 0.0011 28.5 2.8 37 32-68 11-54 (79)
120 3lqh_A Histone-lysine N-methyl 29.2 28 0.00095 34.5 2.7 54 35-88 1-64 (183)
121 2vje_B MDM4 protein; proto-onc 28.7 26 0.00089 28.2 2.0 47 36-90 7-56 (63)
122 2d8y_A Eplin protein; LIM doma 28.3 57 0.0019 27.6 4.2 36 29-64 8-51 (91)
123 4a0k_B E3 ubiquitin-protein li 28.3 14 0.00048 34.1 0.4 54 35-89 47-111 (117)
124 2gai_A DNA topoisomerase I; zi 28.2 12 0.00042 43.3 -0.0 45 38-87 574-621 (633)
125 1we9_A PHD finger family prote 27.8 21 0.00071 28.9 1.3 53 35-90 5-61 (64)
126 2c0n_A A197; thermophil protei 27.5 56 0.0019 33.2 4.6 79 560-655 52-134 (203)
127 1mm2_A MI2-beta; PHD, zinc fin 27.5 33 0.0011 27.9 2.4 46 35-87 8-56 (61)
128 3t6p_A Baculoviral IAP repeat- 27.5 23 0.0008 38.1 2.0 43 36-90 295-338 (345)
129 1m4f_A Hepcidin; strand-loop-s 27.2 5 0.00017 28.6 -2.1 23 62-86 3-25 (26)
130 1dl6_A Transcription factor II 27.1 51 0.0017 26.8 3.5 7 38-44 13-19 (58)
131 2xqn_T Testin, TESS; metal-bin 27.1 31 0.0011 30.8 2.4 43 38-89 32-74 (126)
132 1x61_A Thyroid receptor intera 27.1 56 0.0019 26.2 3.8 9 63-71 54-62 (72)
133 1wge_A Hypothetical protein 26 27.0 22 0.00074 31.4 1.3 28 37-65 31-62 (83)
134 2pk7_A Uncharacterized protein 26.6 4.3 0.00015 34.6 -3.1 32 72-103 20-51 (69)
135 1f62_A Transcription factor WS 26.5 31 0.0011 26.6 2.1 45 38-86 2-49 (51)
136 2jr7_A DPH3 homolog; DESR1, CS 25.4 17 0.00058 32.5 0.4 28 37-65 24-55 (89)
137 1yop_A KTI11P; zinc finger, me 25.1 19 0.00066 31.7 0.7 28 37-65 24-55 (83)
138 3q80_A 2-C-methyl-D-erythritol 24.9 44 0.0015 33.3 3.4 28 562-589 100-127 (231)
139 1x4l_A Skeletal muscle LIM-pro 23.7 50 0.0017 26.5 2.9 12 36-47 5-16 (72)
140 1x63_A Skeletal muscle LIM-pro 23.5 54 0.0018 26.9 3.1 13 35-47 14-26 (82)
141 2gmg_A Hypothetical protein PF 23.5 24 0.0008 32.5 0.9 27 56-88 68-94 (105)
142 2e72_A POGO transposable eleme 22.5 27 0.00093 28.2 1.0 15 77-91 11-25 (49)
143 3f6q_B LIM and senescent cell 21.5 51 0.0018 26.0 2.5 15 33-47 8-22 (72)
144 2ksl_A U1-agatoxin-TA1A; insec 20.9 3.6 0.00012 32.4 -4.2 26 35-60 19-48 (51)
145 3e2i_A Thymidine kinase; Zn-bi 20.8 8.1 0.00028 39.5 -3.0 36 37-72 163-209 (219)
146 2egq_A FHL1 protein; LIM domai 20.7 49 0.0017 26.9 2.2 12 36-47 15-26 (77)
147 1fp0_A KAP-1 corepressor; PHD 20.6 79 0.0027 28.0 3.7 51 30-87 19-72 (88)
148 2puy_A PHD finger protein 21A; 20.5 19 0.00066 28.9 -0.2 49 35-90 4-55 (60)
149 2orv_A Thymidine kinase; TP4A 20.4 30 0.001 35.6 1.1 35 37-71 151-190 (234)
150 2yho_A E3 ubiquitin-protein li 20.3 59 0.002 27.3 2.7 42 37-90 19-61 (79)
No 1
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=100.00 E-value=1.1e-44 Score=319.35 Aligned_cols=84 Identities=69% Similarity=1.316 Sum_probs=81.6
Q ss_pred cccccccCCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCcCCCCCccccc
Q 003854 28 IKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDID 107 (791)
Q Consensus 28 ~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~kGsprv~gd~ee~~~d 107 (791)
+|||+++++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+|||+|+++|
T Consensus 8 ~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GDe~e~d~d 87 (93)
T 1weo_A 8 PKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEEDID 87 (93)
T ss_dssp SSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCCCCSC
T ss_pred CCcccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 003854 108 DLDH 111 (791)
Q Consensus 108 d~~~ 111 (791)
|+++
T Consensus 88 D~~~ 91 (93)
T 1weo_A 88 SGPS 91 (93)
T ss_dssp CCCS
T ss_pred cccc
Confidence 9763
No 2
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=99.94 E-value=1.3e-26 Score=269.92 Aligned_cols=257 Identities=24% Similarity=0.402 Sum_probs=205.3
Q ss_pred hHHH-HHHHHHHHHHHHHhhhcccCCc-----hhHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhcCCC
Q 003854 282 YRLI-IILRLVILGLFFHYRILHPVNN-----AYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGK 355 (791)
Q Consensus 282 yR~l-iv~~li~l~~yl~wRi~~~~~~-----a~~lWl~~~i~Ei~fa~swlL~q~~kw~Pv~R~t~~drL~~r~e~~~~ 355 (791)
.|++ +++.+++.+.|++||++.+++. +.++|++++++|+++.+.|++..+..|+|+.|...++. .
T Consensus 65 ~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~---------~ 135 (802)
T 4hg6_A 65 PRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL---------Q 135 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC---------C
T ss_pred hHHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC---------C
Confidence 3554 5566667789999999987653 35678899999999999999999999999988765431 2
Q ss_pred CCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCC
Q 003854 356 PSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPR 435 (791)
Q Consensus 356 ~~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepR 435 (791)
++++|.|+|+|||| ||++.++.+||.|+++.+||.+++.|+|.|||.+.-|.+.
T Consensus 136 ~~~~P~VSViIPty---Ne~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~----------------------- 189 (802)
T 4hg6_A 136 PEELPTVDILVPSY---NEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS----------------------- 189 (802)
T ss_dssp TTTCCCEEEEEECT---TCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC-----------------------
T ss_pred ccCCCcEEEEEEEC---CCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc-----------------------
Confidence 45799999999999 9999999999999999999999999999999999865321
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccC
Q 003854 436 APEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 515 (791)
Q Consensus 436 aPe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~ 515 (791)
..++.+++ +.+-...++.++++.
T Consensus 190 ----------------~d~~i~~~-------~~~~~~~l~~~~~~~---------------------------------- 212 (802)
T 4hg6_A 190 ----------------PDPELAQK-------AQERRRELQQLCREL---------------------------------- 212 (802)
T ss_dssp ----------------SSHHHHHH-------HHHHHHHHHHHHHHH----------------------------------
T ss_pred ----------------CCHHHHHH-------HHhhhHHHHHHHHhc----------------------------------
Confidence 01222221 112222233343221
Q ss_pred CCCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc-cCCCCc
Q 003854 516 SGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGK 594 (791)
Q Consensus 516 ~g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl-Dp~~g~ 594 (791)
.+.|+.|++ +++.||||+|.+++. ++++||+++|+|. ++.|++|++++.+|. ||
T Consensus 213 ------------~v~~i~~~~----~~~GKa~alN~gl~~----a~gd~Il~lDaD~-~~~pd~L~~lv~~~~~dp---- 267 (802)
T 4hg6_A 213 ------------GVVYSTRER----NEHAKAGNMSAALER----LKGELVVVFDADH-VPSRDFLARTVGYFVEDP---- 267 (802)
T ss_dssp ------------TCEEEECSS----CCSHHHHHHHHHHHH----CCCSEEEECCTTE-EECTTHHHHHHHHHHHSS----
T ss_pred ------------CcEEEEecC----CCCcchHHHHHHHHh----cCCCEEEEECCCC-CcChHHHHHHHHHHhcCC----
Confidence 167888887 467999999999998 6899999999999 589999999999995 76
Q ss_pred ceEEEecCccccCCCC-------CCccccchhhhhhhhccccccCCCccccccchhhhhhhh---cCCCCC
Q 003854 595 KICYVQFPQRFDGIDR-------HDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL---YGYDAP 655 (791)
Q Consensus 595 ~vafVQtPQ~F~Nid~-------~D~~~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL---~G~~Pp 655 (791)
++++||+|+.|.|.++ ...+.+.+..||...+.+++.+++++++|+++++||+++ .|+++.
T Consensus 268 ~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~vGgf~~~ 338 (802)
T 4hg6_A 268 DLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDEAGGFAGE 338 (802)
T ss_dssp SCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHHHHTTCCCS
T ss_pred CeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHHHHcCCcCCC
Confidence 4889999999998764 235667788999999999999999999999999999999 466653
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.14 E-value=1.3e-10 Score=129.89 Aligned_cols=127 Identities=18% Similarity=0.197 Sum_probs=97.5
Q ss_pred CCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCC
Q 003854 357 SQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRA 436 (791)
Q Consensus 357 ~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRa 436 (791)
..+|.|.|+|+|+ +|+ ..+..||.|+++.+||. .+.|+|.|||.+.-|.+.+.
T Consensus 90 ~~~p~vsviIp~~---n~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~~---------------------- 142 (625)
T 2z86_A 90 LIIDGLSIVIPTY---NRA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIVR---------------------- 142 (625)
T ss_dssp CCCCCEEEEEEES---SCH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHHH----------------------
T ss_pred ccCCcEEEEEecC---CcH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHHH----------------------
Confidence 4689999999999 885 78899999999999986 78999999998873211110
Q ss_pred cccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCC
Q 003854 437 PEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQS 516 (791)
Q Consensus 437 Pe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~ 516 (791)
.+.
T Consensus 143 ---------------------------------------~~~-------------------------------------- 145 (625)
T 2z86_A 143 ---------------------------------------EFE-------------------------------------- 145 (625)
T ss_dssp ---------------------------------------TTT--------------------------------------
T ss_pred ---------------------------------------Hhh--------------------------------------
Confidence 000
Q ss_pred CCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc-cCCCCcc
Q 003854 517 GVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKK 595 (791)
Q Consensus 517 g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl-Dp~~g~~ 595 (791)
.-+.+.|+.+++ ..+.||+|+|.+++. +.++||++||+|++ +.|++|.+++-+|. +| .
T Consensus 146 --------~~~~i~~i~~~~----~~~g~~~a~N~g~~~----a~g~~v~~lD~D~~-~~~~~l~~~~~~~~~~~----~ 204 (625)
T 2z86_A 146 --------SLLNIKYVRQKD----YGYQLCAVRNLGLRA----AKYNYVAILDCDMA-PNPLWVQSYMELLAVDD----N 204 (625)
T ss_dssp --------TTSCEEEEEECC----CSCCHHHHHHHHHHH----CCSSEEEEECTTEE-ECTTHHHHHHHHHHHCT----T
T ss_pred --------hcCCeEEEEeCC----CCcchhHHHHHHHHh----CCcCEEEEECCCCC-CCHHHHHHHHHHHhcCC----c
Confidence 002377777654 234699999999998 68999999999995 79999999999987 44 4
Q ss_pred eEEEecCccccCC
Q 003854 596 ICYVQFPQRFDGI 608 (791)
Q Consensus 596 vafVQtPQ~F~Ni 608 (791)
+++|+..+.+.+.
T Consensus 205 ~~~~g~~~~~~~~ 217 (625)
T 2z86_A 205 VALIGPRKYIDTS 217 (625)
T ss_dssp EEEECCEEEECCT
T ss_pred eEEEEeeeeccCc
Confidence 7888877666544
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=98.94 E-value=6.9e-10 Score=108.54 Aligned_cols=161 Identities=12% Similarity=0.164 Sum_probs=108.6
Q ss_pred cceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCccc
Q 003854 360 AKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEW 439 (791)
Q Consensus 360 P~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~ 439 (791)
|.|.|+|||+ |++ ..+..||.|+++.+|| .+.|+|.|||.+.-|.+.+.+
T Consensus 1 p~vSViIp~y---n~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~~------------------------ 50 (255)
T 1qg8_A 1 PKVSVIMTSY---NKS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRP------------------------ 50 (255)
T ss_dssp CCEEEEEEES---SCT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGG------------------------
T ss_pred CeEEEEEEcC---CCH-HHHHHHHHHHHhccCC--ceEEEEEECCCCchHHHHHHH------------------------
Confidence 6799999999 776 7889999999999998 488999999988743222110
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCCc
Q 003854 440 YFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVR 519 (791)
Q Consensus 440 YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~ 519 (791)
++.
T Consensus 51 -------------------------------------~~~---------------------------------------- 53 (255)
T 1qg8_A 51 -------------------------------------FLN---------------------------------------- 53 (255)
T ss_dssp -------------------------------------GGG----------------------------------------
T ss_pred -------------------------------------Hhh----------------------------------------
Confidence 000
Q ss_pred CCCCCCCCeEEEEeccCCCCC----CCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc-cCCCCc
Q 003854 520 DVEGNELPSLVYVSREKRPGF----EHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGK 594 (791)
Q Consensus 520 d~~g~~lP~lvYvSReKrPg~----~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl-Dp~~g~ 594 (791)
-|++.|+..+.. +. ....+++|+|.+++. ++++||+.+|+|-+ ..|++|.+++-+|. +|
T Consensus 54 ------~~~i~~i~~~~~-~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~-~~~~~l~~~~~~~~~~~---- 117 (255)
T 1qg8_A 54 ------DNRVRFYQSDIS-GVKERTEKTRYAALINQAIEM----AEGEYITYATDDNI-YMPDRLLKMVRELDTHP---- 117 (255)
T ss_dssp ------STTEEEEECCCC-SHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEE-ECTTHHHHHHHHHHHCT----
T ss_pred ------cCCEEEEecccc-cccccccccCHHHHHHHHHHH----cCCCEEEEeCCCCc-cChHHHHHHHHHHHhCC----
Confidence 023666666510 00 123699999999997 68999999999995 78999999999987 44
Q ss_pred ceEEEecCcccc--CCCCCCccccchhhhhhhhccccccCCCccccccchhhhhhhh
Q 003854 595 KICYVQFPQRFD--GIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL 649 (791)
Q Consensus 595 ~vafVQtPQ~F~--Nid~~D~~~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL 649 (791)
++++|.+...+. +.+.. ..... +.. .............|++.++||++|
T Consensus 118 ~~~~v~~~~~~~~~~~~~~-~~~~~----~~~-~~~~~~~~~~~~~~~~~~~rr~~~ 168 (255)
T 1qg8_A 118 EKAVIYSASKTYHLNENRD-IVKET----VRP-AAQVTWNAPCAIDHCSVMHRYSVL 168 (255)
T ss_dssp TCCEEEEEEEEEEEC---C-EEEEE----EEC-CCSCBSCCTTTSCGGGEEEETHHH
T ss_pred CceEEEeceEEEEeCCCCc-chhhc----cCc-hHHHHHhhcCCCccceEEEEHHHH
Confidence 477888876655 32211 11110 000 001111344567889999999999
No 5
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=98.89 E-value=5.2e-09 Score=113.26 Aligned_cols=115 Identities=16% Similarity=0.074 Sum_probs=91.6
Q ss_pred CCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchh-hHHHHHHHHHHHhhhHHHHHhhcCCC
Q 003854 356 PSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAML-TFEALSETSEFARKWVPFCKKFNIEP 434 (791)
Q Consensus 356 ~~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~l-Tf~aL~Eaa~FA~~WVPFCkK~~Iep 434 (791)
+..+|.|.|+|+|+ ||+...+..||.|+++..||...+.|+|.|||.+.- |.+.|
T Consensus 25 ~~~~p~vSVIIp~y---N~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l--------------------- 80 (472)
T 1xhb_A 25 PDNLPTTSVVIVFH---NEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPL--------------------- 80 (472)
T ss_dssp CSCCCCEEEEEEES---SCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHH---------------------
T ss_pred CcCCCCeEEEEEeC---CCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHH---------------------
Confidence 45799999999999 999889999999999999997678999999998862 32211
Q ss_pred CCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeecc
Q 003854 435 RAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLG 514 (791)
Q Consensus 435 RaPe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~ 514 (791)
+++++
T Consensus 81 ----------------------------------------~~~~~----------------------------------- 85 (472)
T 1xhb_A 81 ----------------------------------------ESYVK----------------------------------- 85 (472)
T ss_dssp ----------------------------------------HHHHH-----------------------------------
T ss_pred ----------------------------------------HHHHH-----------------------------------
Confidence 11211
Q ss_pred CCCCcCCCCCCCC-eEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhccccc
Q 003854 515 QSGVRDVEGNELP-SLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD 589 (791)
Q Consensus 515 ~~g~~d~~g~~lP-~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflD 589 (791)
.+| ++.+|..+++. .+++|+|.+++. +.|+||++||+|. +.+|++|.+++-+|..
T Consensus 86 ----------~~~~~v~vi~~~~n~-----G~~~a~N~g~~~----A~gd~i~flD~D~-~~~p~~L~~ll~~~~~ 141 (472)
T 1xhb_A 86 ----------KLKVPVHVIRMEQRS-----GLIRARLKGAAV----SRGQVITFLDAHC-ECTAGWLEPLLARIKH 141 (472)
T ss_dssp ----------SSSSCEEEEECSSCC-----CHHHHHHHHHHH----CCSSEEEEEESSE-EECTTCHHHHHHHHHH
T ss_pred ----------HCCCcEEEEECCCCC-----ChHHHHHHHHHh----ccCCeEEEECCCe-EeCccHHHHHHHHHHh
Confidence 123 36777776643 399999999998 6799999999999 4899999999998863
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=98.88 E-value=2.2e-09 Score=117.59 Aligned_cols=113 Identities=16% Similarity=0.087 Sum_probs=90.5
Q ss_pred CCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCC
Q 003854 356 PSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPR 435 (791)
Q Consensus 356 ~~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepR 435 (791)
+..+|.|.|+|+|| ||....+..||.|+++..||...+.|+|.|||.+.-|...+
T Consensus 62 ~~~~p~vSVIIp~y---N~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---------------------- 116 (501)
T 2ffu_A 62 RVDLPATSVVITFH---NEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---------------------- 116 (501)
T ss_dssp CSSCCCEEEEEEES---SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG----------------------
T ss_pred CcCCCCEEEEEEeC---cCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHH----------------------
Confidence 35799999999999 99987899999999999999766799999999886331110
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccC
Q 003854 436 APEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 515 (791)
Q Consensus 436 aPe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~ 515 (791)
+ +
T Consensus 117 -----------------------------------------~-~------------------------------------ 118 (501)
T 2ffu_A 117 -----------------------------------------L-G------------------------------------ 118 (501)
T ss_dssp -----------------------------------------G-G------------------------------------
T ss_pred -----------------------------------------H-h------------------------------------
Confidence 0 0
Q ss_pred CCCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccC
Q 003854 516 SGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDP 590 (791)
Q Consensus 516 ~g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp 590 (791)
..|.+.||..+++. .+++|+|.+++. +.|+||++||+|.. ..|++|.+++-.|...
T Consensus 119 ---------~~~~v~vi~~~~n~-----G~~~A~N~G~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 119 ---------KIEKVRVLRNDRRE-----GLMRSRVRGADA----AQAKVLTFLDSHCE-CNEHWLEPLLERVAED 174 (501)
T ss_dssp ---------GBTTEEEEECSSCC-----HHHHHHHHHHHH----CCSSEEEECCSSEE-ECTTCHHHHHHHHHHC
T ss_pred ---------cCCCEEEEECCCCc-----CHHHHHHHHHHh----cCCCEEEEECCCcc-cCccHHHHHHHHHHhC
Confidence 01347777766643 499999999998 67999999999995 7899999999988753
No 7
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=98.88 E-value=2.4e-09 Score=120.27 Aligned_cols=116 Identities=16% Similarity=0.075 Sum_probs=91.2
Q ss_pred CCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCC
Q 003854 357 SQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRA 436 (791)
Q Consensus 357 ~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRa 436 (791)
..+|.|.|+|+|| +|+...+.+||.|+++..||...+.|+|.|||.+.-|+.++
T Consensus 109 ~~~P~vSVIIp~y---Ne~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~----------------------- 162 (570)
T 2d7i_A 109 ETLPNTSIIIPFH---NEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKP----------------------- 162 (570)
T ss_dssp SSCCCEEEEEEES---SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHH-----------------------
T ss_pred CCCCCeEEEEEEC---CCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHH-----------------------
Confidence 4689999999999 99888999999999999999756699999999887441111
Q ss_pred cccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCC
Q 003854 437 PEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQS 516 (791)
Q Consensus 437 Pe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~ 516 (791)
++.+++
T Consensus 163 -------------------------------------l~~~~~------------------------------------- 168 (570)
T 2d7i_A 163 -------------------------------------LEDYMA------------------------------------- 168 (570)
T ss_dssp -------------------------------------HHHHHT-------------------------------------
T ss_pred -------------------------------------HHHHHH-------------------------------------
Confidence 111210
Q ss_pred CCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccC
Q 003854 517 GVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDP 590 (791)
Q Consensus 517 g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp 590 (791)
..|++.+|..+++ ..+++|+|.+++. +.++||++||+|.. .+|++|.+++-+|.+.
T Consensus 169 --------~~~~v~vi~~~~n-----~G~~~A~N~G~~~----A~gd~i~fLD~D~~-~~p~~L~~ll~~l~~~ 224 (570)
T 2d7i_A 169 --------LFPSVRILRTKKR-----EGLIRTRMLGASV----ATGDVITFLDSHCE-ANVNWLPPLLDRIARN 224 (570)
T ss_dssp --------TSTTEEEEECSSC-----CCHHHHHHHHHHH----CCSSEEEECCSSEE-ECTTCSHHHHHHHHHC
T ss_pred --------hCCeEEEEECCCC-----CCHHHHHHHHHHh----cCCCEEEEEcCCcc-ccccHHHHHHHHHHhC
Confidence 1134677766654 3599999999998 67999999999995 6999999999998753
No 8
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=98.88 E-value=3.4e-09 Score=102.42 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=85.3
Q ss_pred CCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCc
Q 003854 358 QLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAP 437 (791)
Q Consensus 358 ~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaP 437 (791)
..|.|.|+|+|| |++ ..+..+|.|+++..|| .+.|+|.|||.+.-|.+.+.
T Consensus 3 ~~p~vsViIp~y---n~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~----------------------- 53 (240)
T 3bcv_A 3 LIPKVSVIVPIY---NVE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICD----------------------- 53 (240)
T ss_dssp CCCSEEEEEEES---SCT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHH-----------------------
T ss_pred CCCcEEEEEecC---CCH-HHHHHHHHHHHhCcCC--CeEEEEEECCCCcCHHHHHH-----------------------
Confidence 468999999999 776 6788999999999998 48899999998874432221
Q ss_pred ccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCC
Q 003854 438 EWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSG 517 (791)
Q Consensus 438 e~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g 517 (791)
.+.++
T Consensus 54 --------------------------------------~~~~~------------------------------------- 58 (240)
T 3bcv_A 54 --------------------------------------DYAAQ------------------------------------- 58 (240)
T ss_dssp --------------------------------------HHHHH-------------------------------------
T ss_pred --------------------------------------HHHhh-------------------------------------
Confidence 11111
Q ss_pred CcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccC
Q 003854 518 VRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDP 590 (791)
Q Consensus 518 ~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp 590 (791)
.|++.|+..+ ...+++|.|.+++. +.|+||+.||+|.+ ..|++|.+++-.|.++
T Consensus 59 --------~~~i~~i~~~------n~G~~~a~N~g~~~----a~g~~i~~lD~Dd~-~~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 59 --------YPNIKVIHKK------NAGLGMACNSGLDV----ATGEYVAFCDSDDY-VDSDMYMTMYNVAQKY 112 (240)
T ss_dssp --------CSSEEEEECC------CCCHHHHHHHHHHH----CCSSEEEECCTTCC-CCTTHHHHHHHHHHHH
T ss_pred --------CCCEEEEECC------CCChHHHHHHHHHH----cCCCEEEEECCCCc-CCHHHHHHHHHHHHhc
Confidence 1336666432 23599999999998 68999999999995 7999999999999763
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=98.65 E-value=4.2e-08 Score=109.70 Aligned_cols=166 Identities=17% Similarity=0.218 Sum_probs=114.0
Q ss_pred CCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCC
Q 003854 357 SQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRA 436 (791)
Q Consensus 357 ~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRa 436 (791)
...|.|.|+|+|| |++ ..+..||.|+++.+||. +.|+|.|||.+.-|.+-+.
T Consensus 372 ~~~~~vsiii~~y---n~~-~~l~~~l~s~~~q~~~~--~eiivvdd~S~d~t~~~~~---------------------- 423 (625)
T 2z86_A 372 KRVPLVSIYIPAY---NCS-KYIVRCVESALNQTITD--LEVCICDDGSTDDTLRILQ---------------------- 423 (625)
T ss_dssp CSSCSEEEEEEES---SCT-TTHHHHHHHHHSSSCCS--EEEEEEEESCSSSHHHHHH----------------------
T ss_pred ccCCeEEEEEeCC---CCH-HHHHHHHHHHHhCcCCC--eEEEEEECcCChhHHHHHH----------------------
Confidence 3578999999999 774 67899999999999984 8899999998874432211
Q ss_pred cccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCC
Q 003854 437 PEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQS 516 (791)
Q Consensus 437 Pe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~ 516 (791)
++.+
T Consensus 424 ---------------------------------------~~~~------------------------------------- 427 (625)
T 2z86_A 424 ---------------------------------------EHYA------------------------------------- 427 (625)
T ss_dssp ---------------------------------------HHHT-------------------------------------
T ss_pred ---------------------------------------HHHh-------------------------------------
Confidence 1110
Q ss_pred CCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc-cCCCCcc
Q 003854 517 GVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKK 595 (791)
Q Consensus 517 g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl-Dp~~g~~ 595 (791)
..|++.++. ++. ..+++|+|.+++. ++|+||+.+|+|-+ ..|++|.+.+-.|. +| +
T Consensus 428 --------~~~~i~~~~-~~n-----~G~~~a~n~g~~~----a~g~~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~ 484 (625)
T 2z86_A 428 --------NHPRVRFIS-QKN-----KGIGSASNTAVRL----CRGFYIGQLDSDDF-LEPDAVELCLDEFRKDL----S 484 (625)
T ss_dssp --------TCTTEEEEE-ECC-----CCHHHHHHHHHHH----CCSSEEEECCTTCE-ECTTHHHHHHHHHHHCT----T
T ss_pred --------hCCcEEEEe-CCC-----CCHHHHHHHHHHh----cCCCEEEEECCCcc-cChhHHHHHHHHHHhCC----C
Confidence 013366664 332 3599999999997 68999999999995 79999999998775 55 4
Q ss_pred eEEEecCccccCCCCCCccccchhhhhhhhccccccCCCccccccchhhhhhhh---cCCCC
Q 003854 596 ICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL---YGYDA 654 (791)
Q Consensus 596 vafVQtPQ~F~Nid~~D~~~n~n~vFfdii~~grDG~qgp~y~GTGcv~RR~AL---~G~~P 654 (791)
+++|.+...+.+.+..-.... +.......+.+...+++|++.++||+++ .||++
T Consensus 485 ~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ggfd~ 541 (625)
T 2z86_A 485 LACVYTTNRNIDREGNLISNG-----YNWPIYSREKLTSAMICHHFRMFTARAWNLTEGFNE 541 (625)
T ss_dssp CSEEEEEEEEECTTSCEEEEC-----CCCSSCCHHHHTTSCCCCSCEEEEHHHHTTTTCCCS
T ss_pred eeEEEeeeEEECCCCCEeccC-----cccccCCHHHHhhcccCCceEEEEHHHHHHhCCCCC
Confidence 778888766654432111000 0000111122344567889999999998 35554
No 10
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=98.47 E-value=9.4e-08 Score=99.64 Aligned_cols=53 Identities=13% Similarity=0.009 Sum_probs=43.5
Q ss_pred ccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc-cCCCCcceEEEecCc
Q 003854 543 HKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKKICYVQFPQ 603 (791)
Q Consensus 543 h~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl-Dp~~g~~vafVQtPQ 603 (791)
..|++|+|.+++. ++|+||+.+|+|.....|++|.+.+-+|+ +| ++++|+...
T Consensus 117 ~G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~----~~~~v~g~~ 170 (329)
T 3ckj_A 117 PGKGEALWRSLAA----SRGDIVVFVDSDLINPHPMFVPWLVGPLLTGD----GVHLVKSFY 170 (329)
T ss_dssp CSHHHHHHHHHHH----CCCSEEEECCTTEESCCTTHHHHHHHHHHSCS----SCCEEEEEE
T ss_pred CCHHHHHHHHHHh----CCCCEEEEECCCCCCcChHHHHHHHHHHHhCC----CccEEEEEe
Confidence 3599999999997 68999999999994379999999998864 55 466887743
No 11
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.24 E-value=1.3e-07 Score=108.75 Aligned_cols=111 Identities=15% Similarity=0.183 Sum_probs=0.0
Q ss_pred CcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCcc
Q 003854 359 LAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPE 438 (791)
Q Consensus 359 LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe 438 (791)
.|.|.|+|||| |++ ..+..||.|+++.+|| .+.|+|.|||.+.-|.+-+.+
T Consensus 1 Mp~vSVIIp~y---N~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~----------------------- 51 (729)
T 3l7i_A 1 MNKLTIIVTYY---NAE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDE----------------------- 51 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEEcC---CCH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCCcHHHHHHH-----------------------
Confidence 37899999999 776 6789999999999999 478999999988744332211
Q ss_pred cccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCC
Q 003854 439 WYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGV 518 (791)
Q Consensus 439 ~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~ 518 (791)
+.++ ++
T Consensus 52 --------------------------------------~~~~------------------------~~------------ 57 (729)
T 3l7i_A 52 --------------------------------------AIKD------------------------YD------------ 57 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------HHHh------------------------CC------------
Confidence 1000 00
Q ss_pred cCCCCCCCCeEEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccC
Q 003854 519 RDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDP 590 (791)
Q Consensus 519 ~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp 590 (791)
+++.|+..++. ...++|.|.+++. +.|+||+.+|+|-+ ..|++|.+.+-.|.++
T Consensus 58 --------~~i~~i~~~~n-----~G~~~arN~gi~~----A~gdyI~flD~Dd~-~~p~~l~~l~~~l~~~ 111 (729)
T 3l7i_A 58 --------KNIRFIDLDEN-----SGHAHARNIALEE----VETPYFMFLDADDE-LASYAITFYLEKFNNT 111 (729)
T ss_dssp ------------------------------------------------------------------------
T ss_pred --------CCEEEEECCCC-----CCHHHHHHHHHHh----ccCCEEEEECCCCC-CChhHHHHHHHHhcCC
Confidence 12455554442 3489999999987 68999999999995 7999999999998844
No 12
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=97.89 E-value=9.8e-06 Score=87.84 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=41.1
Q ss_pred cchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc-cCCCCcceEEEec
Q 003854 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKKICYVQF 601 (791)
Q Consensus 544 ~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl-Dp~~g~~vafVQt 601 (791)
.|++|+|.+++. +.++||+.+|+|.....|++|.+.+-.+. +|. +.+|..
T Consensus 166 G~g~A~n~G~~~----A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~----~d~v~G 216 (387)
T 3f1y_A 166 GKGDAMWRALSV----TRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPG----VRFVKA 216 (387)
T ss_dssp SHHHHHHHHTTT----CCSSEEEECCTTCSSCCTHHHHTTHHHHHHSTT----CCEEEE
T ss_pred CHHHHHHHHHHh----cCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCC----ceEEEE
Confidence 599999999987 57999999999993279999999998885 443 556655
No 13
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=97.85 E-value=1.4e-05 Score=92.04 Aligned_cols=63 Identities=11% Similarity=0.035 Sum_probs=45.9
Q ss_pred EEEEeccCCCCCCCccchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEec
Q 003854 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQF 601 (791)
Q Consensus 529 lvYvSReKrPg~~Hh~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQt 601 (791)
+.||..+ . ...|||.|.+++...-.++++||+.||.|-+ +.|++|.+++-+|... +++++|+.
T Consensus 242 I~vI~~~-N-----~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~-~~pd~L~~ll~~l~~~---~~~~~vg~ 304 (657)
T 4fix_A 242 LSIHDQP-N-----LGGSGGYSRVMYEALKNTDCQQILFMDDDIR-LEPDSILRVLAMHRFA---KAPMLVGG 304 (657)
T ss_dssp EEEEECC-C-----CHHHHHHHHHHHHHHHHCCCSEEEEECSSEE-ECTHHHHHHHHHHHHB---SSCCEEEE
T ss_pred EEEEECC-C-----CCHHHHHHHHHHHHHhcCCCCEEEEECCCCc-cChhHHHHHHHHHHhC---CCcEEEEe
Confidence 6666543 2 3579999999987421237899999999994 7899999999998632 13555554
No 14
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.32 E-value=0.0055 Score=52.69 Aligned_cols=52 Identities=31% Similarity=0.912 Sum_probs=42.8
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
...|.||=+.+.+ +.-.|.+| .|+.-+|+.|+.--.++++..||.|+.+|..
T Consensus 11 ~~~CpICle~~~~--~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 11 PVECPLCMEPLEI--DDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCBCTTTCCBCCT--TTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CCcCCccCccCcc--cccccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 4589999997633 33468888 9999999999987777788999999999964
No 15
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=95.07 E-value=0.029 Score=60.41 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=37.9
Q ss_pred CcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCch
Q 003854 359 LAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 407 (791)
Q Consensus 359 LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP~~Kl~~YVsDDG~s~ 407 (791)
|+.+-|+|.|| |-| . +..|+-|+++..++.++.-++|+|||...
T Consensus 1 ~~~~pViI~~y---NRp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~ 44 (343)
T 1fo8_A 1 LAVIPILVIAC---DRS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEES---SCT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCcccEEEEEC---CcH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCH
Confidence 45577899999 888 5 99999999999977778889999999765
No 16
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=94.15 E-value=0.31 Score=53.34 Aligned_cols=42 Identities=14% Similarity=-0.023 Sum_probs=34.1
Q ss_pred ccchhhhhHHH----HHhccCCCCCEEEEecCCCCCChHHHHHHhhcccc
Q 003854 543 HKKAGAMNALV----RVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM 588 (791)
Q Consensus 543 h~KAGalN~lL----rvSa~ltngpfILnlDcD~yinnp~~Lr~amcffl 588 (791)
..|.+||++.+ +. +.|++|+.+|||-.-..|+.+.+.+-.+.
T Consensus 74 ~GkG~Al~~G~~~Al~~----a~gd~vv~mDADlq~~~P~~i~~Ll~~l~ 119 (397)
T 2bo4_A 74 PGKGDGMNTALRYFLEE----TQWERIHFYDADITSFGPDWITKAEEAAD 119 (397)
T ss_dssp SSHHHHHHHHHHHHHHH----CCCSEEEECCTTCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 46999999999 55 68999999999993248888888776553
No 17
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=93.85 E-value=0.11 Score=51.81 Aligned_cols=39 Identities=5% Similarity=0.023 Sum_probs=34.4
Q ss_pred hhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHHhhccccc
Q 003854 546 AGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD 589 (791)
Q Consensus 546 AGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflD 589 (791)
|.|+|.+++. +.|+||+.||.|-+ ..+++|.+.+-+|..
T Consensus 63 a~a~N~Gi~~----A~g~yl~fln~D~~-~~~~~l~~l~~~~~~ 101 (249)
T 2nxv_A 63 FSWHKQMLPR----CKGRYVIFCHEDVE-LVDRGYDDLVAAIEA 101 (249)
T ss_dssp TTHHHHHGGG----CCSSEEEEEETTEE-CSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHh----cCCCEEEEECCCcc-cCccHHHHHHHHHHh
Confidence 7889999987 67999999999996 589999999988864
No 18
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=89.36 E-value=0.34 Score=39.68 Aligned_cols=50 Identities=34% Similarity=0.609 Sum_probs=36.6
Q ss_pred CCcccccccccccccCCCCceeecCCCCC---CcchhhHHHHHhh-cCCCCCCCccccc
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAF---PVCRPCYEYERRE-GNQACPQCKTRYK 89 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~F---pvCr~Cyeyerke-G~q~CPqCKt~Yk 89 (791)
.+..|.||-++ .+++++.+| .|.= -|=+.|.+-=+++ |+..||.|+++|.
T Consensus 5 ~~~~CrIC~~~----~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEE----LGNERFRAC-GCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEE----CSCCCCCSC-CCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecC----CCCceecCc-CCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45689999775 234678888 6743 4556788655554 6889999999996
No 19
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.76 E-value=0.46 Score=37.86 Aligned_cols=54 Identities=26% Similarity=0.668 Sum_probs=39.1
Q ss_pred CCcccccccccccccC-CCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 35 SGQTCQICEDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~-~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
....|.||-+.+.-.. .++..+.- .|+--.|+.|.+--.+. +..||-|++++.+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 4568999999865543 34444443 78999999999655444 6799999998753
No 20
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=87.85 E-value=1.3 Score=48.76 Aligned_cols=36 Identities=31% Similarity=0.339 Sum_probs=27.5
Q ss_pred cchhhhhHHHHHhccCCCCCEEEEecCCCCCChHHHHHH
Q 003854 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALRE 582 (791)
Q Consensus 544 ~KAGalN~lLrvSa~ltngpfILnlDcD~yinnp~~Lr~ 582 (791)
.|..||=+.+.++. ...+++|+.+|||-|+ |.++.+
T Consensus 144 GKG~Am~aGl~~A~-~~~gd~Vv~~DaDl~i--P~~v~~ 179 (394)
T 2zu9_A 144 GKGEGMLVGLLLAK-AIGAEYVGFVDADNYI--PGAVNE 179 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCSEEEECCSCBSC--HHHHHH
T ss_pred ChHHHHHHHHHHHh-hCCCCEEEEEeCCCCC--HHHHHH
Confidence 69999999998742 1279999999999974 555543
No 21
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.73 E-value=0.66 Score=39.99 Aligned_cols=55 Identities=24% Similarity=0.524 Sum_probs=40.0
Q ss_pred ccCCcccccccccccccCCCCceeecCCCC---CCcchhhHHHHHhh-cCCCCCCCcccccc
Q 003854 33 ELSGQTCQICEDEIEITDNGEPFVACNECA---FPVCRPCYEYERRE-GNQACPQCKTRYKR 90 (791)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~---FpvCr~Cyeyerke-G~q~CPqCKt~Ykr 90 (791)
......|.||-++. ++++.+..+| .|. --+.+.|.+-=.+. ++..||.|++.|.-
T Consensus 12 ~~~~~~C~IC~~~~--~~~~~l~~pC-~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEG--DDESPLITPC-HCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCC--CSSSCEECSS-SCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccc--cCCCeeEecc-ccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34566999998764 3445667788 663 67999999665554 44799999999964
No 22
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=87.54 E-value=0.51 Score=49.09 Aligned_cols=39 Identities=13% Similarity=0.034 Sum_probs=30.2
Q ss_pred CcceeEEEecCCCCCCCHHHHHHHHHHHH---cCCCCCCccEEEEcCC
Q 003854 359 LAKVDIFVSTVDPMKEPPLITANTVLSIL---AVDYPVDKVACYVSDD 403 (791)
Q Consensus 359 LP~VDVFV~T~DP~kEPp~vt~nTVlS~l---AlDYP~~Kl~~YVsDD 403 (791)
.|.|-|+|+|+ |++ ..+..+|.|++ +..|+ .+.|+|.||
T Consensus 64 ~~~VSIIIP~y---N~~-~~L~~~L~sl~~~l~q~~~--~~EIiVVdd 105 (287)
T 2fy7_A 64 PHKVAIIIPFR---NRQ-EHLKYWLYYLHPVLQRQQL--DYGIYVINQ 105 (287)
T ss_dssp SCEEEEEEEES---SCH-HHHHHHHHHHHHHHHHTTC--EEEEEEEEE
T ss_pred CCcEEEEEeeC---CCH-HHHHHHHHHHHHHHHHhcC--CceEEEEEe
Confidence 58899999999 765 56777888877 45665 377888888
No 23
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=87.45 E-value=0.32 Score=39.27 Aligned_cols=55 Identities=25% Similarity=0.643 Sum_probs=40.1
Q ss_pred cCCcccccccccccccC-CCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 34 LSGQTCQICEDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 34 ~~~~~C~iCgd~vg~~~-~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
.....|.||-+.+.... +++..+.- .|+--.|+.|.+--.+. +..||.|++++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 34568999999876543 45544444 89999999999654444 4699999998853
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=86.09 E-value=0.5 Score=39.03 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=37.2
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
.-.|.||.+... ++.+. .|+.-.|+.|.+--.+.|+..||.|++++.
T Consensus 8 ~~~C~IC~~~~~-----~Pv~~--~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 8 YFRCPISLELMK-----DPVIV--STGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSCTTTSCCCS-----SEEEE--TTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cCCCCCcccccc-----CCEEc--CCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 458999987542 24333 699999999998878788899999999884
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.85 E-value=0.71 Score=36.98 Aligned_cols=53 Identities=23% Similarity=0.590 Sum_probs=37.1
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
...|.||-+++..+.. ..++. -.|+--.|+.|.+--...+...||.|++++..
T Consensus 3 ~~~C~IC~~~~~~~~~-~~~~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPS-LKLMV-NVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSS-CCEEE-CTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCc-cCeec-CCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3579999884333322 12233 26899999999976656677899999999864
No 26
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=85.82 E-value=0.54 Score=44.55 Aligned_cols=48 Identities=29% Similarity=0.765 Sum_probs=38.0
Q ss_pred cccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
..|.||-+.+. ++ |.+..|+--.|+.|.+--.+.++..||.|++++..
T Consensus 55 ~~C~IC~~~~~-----~p-~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLK-----NT-MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCS-----SE-EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhh-----Cc-CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 38999987753 13 33347899999999988888888999999999853
No 27
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=85.45 E-value=0.36 Score=37.94 Aligned_cols=53 Identities=26% Similarity=0.663 Sum_probs=38.6
Q ss_pred CcccccccccccccC-CCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~-~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
...|.||-+...... .++..+.- .|+--.|+.|.+--.+. +..||.|++++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 358999999865543 44444444 78999999999654444 6799999999853
No 28
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=83.85 E-value=2.5 Score=34.73 Aligned_cols=53 Identities=21% Similarity=0.520 Sum_probs=36.6
Q ss_pred cCCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 003854 34 LSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (791)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~ 91 (791)
.....|.||-+.+.. ++..+.- .|+--.|+.|..--.+ .+..||-|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~~~-~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYAL---GESVRQL-PCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCT---TSCEEEC-TTSCEEETTTTHHHHT-TTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccC---CCCEEEe-CCCCeecHHHHHHHHH-cCCcCcCcCCccCCc
Confidence 345699999988643 3333222 4788899999964443 447999999998643
No 29
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=83.44 E-value=1.2 Score=34.03 Aligned_cols=50 Identities=28% Similarity=0.632 Sum_probs=35.6
Q ss_pred CCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccc
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Y 88 (791)
....|.||-+.+.. ++..+..-.|+--.|+.|..--.+.. ..||-|++++
T Consensus 4 ~~~~C~IC~~~~~~---~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHT---SRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCT---TTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCcCcccChhhcC---CCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 35689999988642 22223334688899999997655555 8999999875
No 30
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=83.40 E-value=1.3 Score=33.90 Aligned_cols=49 Identities=24% Similarity=0.546 Sum_probs=34.6
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Y 88 (791)
...|.||-+.+.. |+..+....|+--.|+.|..--. ..+..||-|++++
T Consensus 5 ~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~~w~-~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 5 GVECAVCLAELED---GEEARFLPRCGHGFHAECVDMWL-GSHSTCPLCRLTV 53 (55)
T ss_dssp SCCCTTTCCCCCT---TSCCEECSSSCCEECTTHHHHTT-TTCCSCSSSCCCS
T ss_pred CCcCccCCccccC---CCceEECCCCCCcccHHHHHHHH-HcCCcCcCCCCEe
Confidence 4589999988643 34334443588889999995433 3467999999875
No 31
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.30 E-value=0.87 Score=36.91 Aligned_cols=48 Identities=29% Similarity=0.694 Sum_probs=35.9
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHh--hcCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERR--EGNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeyerk--eG~q~CPqCKt~Ykr 90 (791)
...|.||-+.+. ++.+ . .|+--.|+.|..--.+ .++..||.|++++..
T Consensus 20 ~~~C~IC~~~~~-----~~~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 20 EVICPICLDILQ-----KPVT-I-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCBCTTTCSBCS-----SEEE-C-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CCEeccCCcccC-----CeEE-c-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 458999998754 2322 2 7899999999976554 356799999999864
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=82.24 E-value=0.98 Score=40.78 Aligned_cols=47 Identities=26% Similarity=0.680 Sum_probs=35.7
Q ss_pred cccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
..|.||-+.+- ++.+ - .|+--.|+.|.+--.+.+...||.|++++..
T Consensus 53 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVF-----RPIT-T-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCS-----SEEE-C-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHc-----CcEE-e-eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47999988754 2322 2 6899999999976666666699999999954
No 33
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.63 E-value=1.1 Score=36.05 Aligned_cols=48 Identities=19% Similarity=0.514 Sum_probs=36.6
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
...|.||-+.+. ++.+ -.|+--.|+.|.+--.+.++..||.|++++..
T Consensus 15 ~~~C~IC~~~~~-----~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLC-----SPKQ--TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEES-----SCCC--CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhc-----CeeE--CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 458999988753 1222 26888899999987776777899999999854
No 34
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=81.37 E-value=1.5 Score=38.76 Aligned_cols=59 Identities=22% Similarity=0.501 Sum_probs=41.1
Q ss_pred CCcccccccccccccC-----------CCCceeecCCCCCCcchhhHHHHHh----hcCCCCCCCccccccccC
Q 003854 35 SGQTCQICEDEIEITD-----------NGEPFVACNECAFPVCRPCYEYERR----EGNQACPQCKTRYKRLKG 93 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~-----------~Ge~fvaC~eC~FpvCr~Cyeyerk----eG~q~CPqCKt~Ykr~kG 93 (791)
....|.||-+.+...+ +-..++..-.|+=-.|+.|..--.+ ..+..||-|++.|...+|
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 3458999988865432 1113444556888999999975554 456799999999976544
No 35
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=79.51 E-value=2.1 Score=34.17 Aligned_cols=49 Identities=24% Similarity=0.558 Sum_probs=34.2
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~ 91 (791)
...|.||-+... +.. ..-.|+--.|+.|..--.+ .+..||-|++++...
T Consensus 5 ~~~C~IC~~~~~-----~~~-~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 5 AERCPICLEDPS-----NYS-MALPCLHAFCYVCITRWIR-QNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCSSCCSCCC-----SCE-EETTTTEEESTTHHHHHHH-HSCSTTTTCCCCCCE
T ss_pred CCCCeeCCcccc-----CCc-EecCCCCeeHHHHHHHHHh-CcCcCcCCChhhHhh
Confidence 458999998853 111 2235788899999965443 447999999998643
No 36
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=79.37 E-value=1.2 Score=44.47 Aligned_cols=48 Identities=13% Similarity=0.078 Sum_probs=36.4
Q ss_pred CCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
..-.|.||.+-. -++.+. .||.-.||.|-+--.+++...||.|++++.
T Consensus 207 ~~~~c~i~~~~~-----~dPv~~--~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELM-----REPCIT--PSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBC-----SSEEEC--SSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cccCCcCcCCHh-----cCCeEC--CCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 455899998652 234442 489999999998777777677999999884
No 37
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.35 E-value=2.3 Score=35.44 Aligned_cols=52 Identities=21% Similarity=0.449 Sum_probs=36.7
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhc--CCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREG--NQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG--~q~CPqCKt~Ykr 90 (791)
...|.||-+....+ ....+.- .|+--.|+.|..--.+.. ...||.|+++++.
T Consensus 15 ~~~C~IC~~~~~~~--~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 15 VLECPICMESFTEE--QLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCBCTTTCCBCCTT--SSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCccCCcccccc--CCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 45899998875432 2223333 689999999997655543 5799999999854
No 38
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.01 E-value=1.2 Score=38.85 Aligned_cols=62 Identities=23% Similarity=0.480 Sum_probs=44.6
Q ss_pred cccCCceEEEeccccccccccccccCCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHh
Q 003854 10 GSHNRNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERR 75 (791)
Q Consensus 10 g~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeyerk 75 (791)
||.-.|||..++.-+- ..+-.+-+...|..|+...|+-- .--+.|..|...||+.|-.+..+
T Consensus 1 ~~~~~~eL~elrrkga--k~~s~~~~~r~CarC~~~LG~l~--~~g~~C~~Ck~rVC~~Crv~~~~ 62 (76)
T 2csz_A 1 GSSGSSGLLEIKRKGA--KRGSQHYSDRTCARCQESLGRLS--PKTNTCRGCNHLVCRDCRIQESN 62 (76)
T ss_dssp CCCCCCCCCCCCCCCS--CSCCTTCCCCBCSSSCCBCSSSC--TTTSEETTTTEECCTTSEEECST
T ss_pred CchhHHHHHHHHHccc--cCcCcCCCccchhhhCccccccc--cCCCcCcccChhhcccccccCCC
Confidence 4555789988875432 12234566679999999998763 23467999999999999876543
No 39
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.58 E-value=2.3 Score=34.93 Aligned_cols=48 Identities=27% Similarity=0.870 Sum_probs=34.8
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhh-----cCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERRE-----GNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeyerke-----G~q~CPqCKt~Ykr 90 (791)
...|.||-+.+.- +. .. .|+-..|+.|..--.+. +...||.|++++..
T Consensus 19 ~~~C~IC~~~~~~-----p~-~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQ-----PL-SL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSS-----CB-CC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCC-----ce-eC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4589999987531 22 22 58889999999654333 57899999999853
No 40
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=77.40 E-value=2.2 Score=35.03 Aligned_cols=48 Identities=31% Similarity=0.834 Sum_probs=34.9
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhh-----cCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERRE-----GNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeyerke-----G~q~CPqCKt~Ykr 90 (791)
...|.||-+.+.- + +.. .|+--.|+.|..--.+. +...||.|++++..
T Consensus 19 ~~~C~IC~~~~~~-----p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKE-----P-VSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSS-----C-EEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCc-----c-eeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4589999887532 2 223 58889999999765444 47899999998853
No 41
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=77.39 E-value=1.9 Score=37.73 Aligned_cols=47 Identities=23% Similarity=0.625 Sum_probs=37.5
Q ss_pred cccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
..|.||-+.+- .-|.|-.|+--.|+.|..--.+.....||.|++++.
T Consensus 23 ~~C~IC~~~~~------~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 23 FRCFICMEKLR------DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp TBCTTTCSBCS------SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCccCCcccc------CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 48999998763 245566899999999997666666579999999984
No 42
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=76.73 E-value=1.7 Score=43.07 Aligned_cols=47 Identities=13% Similarity=0.024 Sum_probs=36.0
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
.-+|.||++- +. ++.+. .||+-.||.|-+--.+.+...||.|++++.
T Consensus 106 ~f~CPI~~el-m~----DPV~~--~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 106 YLCGKISFEL-MR----EPCIT--PSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGBCTTTCSB-CS----SEEEC--TTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred hhcccCcccc-CC----CCeEC--CCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 3489999864 33 46666 499999999998777664457999999884
No 43
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=76.68 E-value=3.2 Score=33.29 Aligned_cols=52 Identities=23% Similarity=0.516 Sum_probs=36.1
Q ss_pred CCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~ 91 (791)
....|.||-+.+. +++..+.- .|+--.|+.|..--.+. +..||-|++++...
T Consensus 13 ~~~~C~IC~~~~~---~~~~~~~~-~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 13 TEEKCTICLSILE---EGEDVRRL-PCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp CCCSBTTTTBCCC---SSSCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CCCCCeeCCcccc---CCCcEEEe-CCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 4568999998763 23333333 57888999999544433 46799999988653
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=73.35 E-value=1.2 Score=39.54 Aligned_cols=48 Identities=27% Similarity=0.807 Sum_probs=36.3
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
.-.|.||-+..- ++.+. .|+--.|+.|..--.+.++..||.|++++..
T Consensus 15 ~~~C~iC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV-----EPVTL--PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS-----SCEEC--TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC-----ceeEc--CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 348999997753 23332 6899999999976666777899999999863
No 45
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=72.89 E-value=0.59 Score=45.29 Aligned_cols=51 Identities=22% Similarity=0.520 Sum_probs=42.6
Q ss_pred CCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccc
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~ 87 (791)
+...|.+|+...|+-. ..-+.|..|...||+.|-.|-++++.=.|--|-..
T Consensus 67 ~~~~C~~C~~~fg~l~--~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLL--NSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCS--SCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCcccccc--CCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 5679999999988763 34688999999999999998888888888877554
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=71.93 E-value=2.6 Score=37.81 Aligned_cols=47 Identities=23% Similarity=0.554 Sum_probs=36.2
Q ss_pred cccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
-.|.||.+.+- ++ |.. .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 19 ~~C~IC~~~~~-----~p-~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCcCChhhc-----Ce-EEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 38999997653 22 334 6899999999987777776699999988854
No 47
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=71.79 E-value=3.3 Score=35.76 Aligned_cols=47 Identities=21% Similarity=0.545 Sum_probs=34.2
Q ss_pred cccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
..|.||-+...- +.+ ...|+--.|+.|..--.+ .+..||.|++++..
T Consensus 23 ~~C~IC~~~~~~-----p~~-~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMI-IPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSS-----EEE-CTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCcccCChhhCC-----cCE-ECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 489999887531 322 236899999999965544 45799999999854
No 48
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=71.46 E-value=9.6 Score=42.02 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=26.8
Q ss_pred ccchhhhhHHHHHhccCCCCCEEEEecCCCCCCh
Q 003854 543 HKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINN 576 (791)
Q Consensus 543 h~KAGalN~lLrvSa~ltngpfILnlDcD~yinn 576 (791)
..|+++|=..+.... +..++||-.+|+|-|+|.
T Consensus 142 ~GKGegmi~Gi~~Ak-~~~geYVgFvDADdyi~~ 174 (391)
T 2wvl_A 142 SGKAEGMILALVFAA-LSGRRYVGFIDADNYFPG 174 (391)
T ss_dssp CSHHHHHHHHHHHHH-HTTCSEEEECCSCBSCHH
T ss_pred ccchHHHHHHHHHHH-hcCCCEEEEEcCcCCCcc
Confidence 479999999987632 348999999999999743
No 49
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.91 E-value=2.6 Score=34.55 Aligned_cols=52 Identities=17% Similarity=0.426 Sum_probs=36.4
Q ss_pred CCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~ 91 (791)
....|.||-+.+.. ++..+.- -|+--.|+.|..--.+. +..||-|+.++...
T Consensus 22 ~~~~C~IC~~~~~~---~~~~~~l-~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFES---RQLLRVL-PCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCB---TCEEEEE-TTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCC---CCeEEEE-CCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 45689999988643 3433333 47888999999654443 57999999888543
No 50
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.74 E-value=5.6 Score=32.35 Aligned_cols=49 Identities=20% Similarity=0.493 Sum_probs=35.0
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~ 91 (791)
...|.||-+.+.- +. ....|+--.|+.|..--.+. +..||.|++++...
T Consensus 15 ~~~C~IC~~~~~~-----p~-~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLID-----AT-TITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSS-----CE-ECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHC-----cC-EECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcc
Confidence 4489999876431 22 22367888899999666544 57999999999653
No 51
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.44 E-value=5 Score=32.58 Aligned_cols=50 Identities=18% Similarity=0.525 Sum_probs=35.8
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
...|.||-+.+.. ++..+.. .|+-..|+.|..--.+. +..||-|++++..
T Consensus 15 ~~~C~IC~~~~~~---~~~~~~~-~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 15 HELCAVCLEDFKP---RDELGIC-PCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp SCBCSSSCCBCCS---SSCEEEE-TTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred CCCCcCCCcccCC---CCcEEEc-CCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 4589999998543 3334433 48888999999654444 4599999998854
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=68.49 E-value=3.7 Score=38.86 Aligned_cols=47 Identities=23% Similarity=0.689 Sum_probs=35.7
Q ss_pred cccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
..|.||-+.+- ++.+ -.|+--.|+.|..--.+.+...||.|++++..
T Consensus 79 ~~C~IC~~~~~-----~pv~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVT--TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCS-----SEEE--CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhc-----CCEE--cCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 48999987642 2333 26888899999977777676799999999854
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=68.13 E-value=3.4 Score=35.37 Aligned_cols=46 Identities=7% Similarity=-0.060 Sum_probs=34.4
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
.-+|.||++- +. ++.+. .||.-.||.|-+--.+ ++..||.|++++.
T Consensus 14 ~~~CpI~~~~-m~----dPV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 14 EFRDPLMDTL-MT----DPVRL--PSGTVMDRSIILRHLL-NSPTDPFNRQMLT 59 (85)
T ss_dssp TTBCTTTCSB-CS----SEEEC--TTSCEEEHHHHHHHHH-HCSBCTTTCCBCC
T ss_pred heECcccCch-hc----CCeEC--CCCCEECHHHHHHHHh-cCCCCCCCcCCCC
Confidence 4589999764 32 24443 3899999999977766 4689999999884
No 54
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=67.76 E-value=2.3 Score=40.26 Aligned_cols=38 Identities=21% Similarity=0.584 Sum_probs=30.5
Q ss_pred ccCCccccccccccccc-CCCCceeecCCCCCCcchhhHHHH
Q 003854 33 ELSGQTCQICEDEIEIT-DNGEPFVACNECAFPVCRPCYEYE 73 (791)
Q Consensus 33 ~~~~~~C~iCgd~vg~~-~~Ge~fvaC~eC~FpvCr~Cyeye 73 (791)
+.+...|.+|+...|+- ..| +.|..|...||+.|-.+-
T Consensus 52 ~~~~~~C~~C~~~~g~l~~~g---~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSAS---VVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCE---EECTTTCCEEETTSEEEC
T ss_pred cCCCccccccCCCcccccCCC---CCCCCCCcccccccCCcc
Confidence 34667999999999754 344 889999999999998654
No 55
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=67.71 E-value=3.6 Score=35.38 Aligned_cols=50 Identities=22% Similarity=0.550 Sum_probs=35.7
Q ss_pred CCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
....|.||-+.+. +|+..+.. -|+--.|+.|..--. ..+..||-|+.++.
T Consensus 39 ~~~~C~IC~~~~~---~~~~~~~l-~C~H~Fh~~Ci~~wl-~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYV---KGDVATEL-PCHHYFHKPCVSIWL-QKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECC---TTCEEEEE-TTTEEEEHHHHHHHH-TTTCBCTTTCCBSS
T ss_pred CCCCCcccChhhc---CCCcEEec-CCCChHHHHHHHHHH-HcCCcCcCcCccCC
Confidence 3458999988764 35554444 488889999985433 45679999998763
No 56
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=66.83 E-value=3.2 Score=38.02 Aligned_cols=48 Identities=25% Similarity=0.758 Sum_probs=33.8
Q ss_pred ccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~ 91 (791)
.|.+|+-.|-+ .|. .++| .=-.|-.|+..-.+++.+.||.|+.+.-|.
T Consensus 3 fC~~C~~Pi~i--ygR-mIPC---kHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGR-MIPC---KHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSE--EEE-EETT---CCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEE--Eee-eccc---cccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 56666665432 222 2344 446699999877889999999999999776
No 57
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=66.69 E-value=1.4 Score=44.06 Aligned_cols=29 Identities=31% Similarity=0.610 Sum_probs=22.5
Q ss_pred cCCccccccccccccc----CCCCceeecCCCCCCcchhhHHH
Q 003854 34 LSGQTCQICEDEIEIT----DNGEPFVACNECAFPVCRPCYEY 72 (791)
Q Consensus 34 ~~~~~C~iCgd~vg~~----~~Ge~fvaC~eC~FpvCr~Cyey 72 (791)
....+|++||+.|+-+ .||. +||++|++.
T Consensus 170 ~~~~~C~~CGE~~~~~~~~~~~g~----------~~C~~C~~~ 202 (204)
T 2gvi_A 170 GAKVRCDVCGEYTYEADAKLLNGK----------PVCKPDYYG 202 (204)
T ss_dssp CCEEECTTTCCEEEGGGCEEETTE----------EECHHHHHC
T ss_pred CCceECCCCCCchhhcceeeeCCc----------EEChhhhcc
Confidence 3456899999998875 4565 789999964
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.58 E-value=5.4 Score=33.61 Aligned_cols=55 Identities=22% Similarity=0.492 Sum_probs=37.8
Q ss_pred CCccccccccccccc--------CCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 35 SGQTCQICEDEIEIT--------DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~--------~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
....|.||-+++.-. ..++..+.-..|+=-.|+.|.+-=.+ .++.||-|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcch
Confidence 455899999987542 23443333337888999999854433 34799999998854
No 59
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=66.04 E-value=3.6 Score=36.55 Aligned_cols=46 Identities=7% Similarity=-0.055 Sum_probs=34.4
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
.-.|.||.+- +. ++.+. .||.-.||.|-+--.+ ++..||.|+.++.
T Consensus 29 ~~~CpI~~~~-m~----dPV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 29 EFRDPLMDTL-MT----DPVRL--PSGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTBCTTTCSB-CS----SEEEE--TTTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred hhCCcCccCc-cc----CCeEC--CCCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 4589999753 32 34443 3899999999977665 5789999999884
No 60
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=65.98 E-value=8 Score=31.72 Aligned_cols=49 Identities=24% Similarity=0.584 Sum_probs=34.9
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhh-cCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERRE-GNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeyerke-G~q~CPqCKt~Ykr 90 (791)
...|.||-+.+. ++.+ -..|+--.|+.|.+--.+. +...||.|++++.+
T Consensus 15 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 15 ELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGSCSSSCCCCT-----TCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCcCCChHHh-----CCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 458999977643 2322 3348999999999766554 44799999997654
No 61
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=65.14 E-value=4.8 Score=35.34 Aligned_cols=48 Identities=19% Similarity=0.530 Sum_probs=34.9
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
.-.|.||-+..- ++.+ ...|+--.|+.|..--.+.+ ..||.|++.+..
T Consensus 15 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFI-----DATT-IIECLHSFCKTCIVRYLETS-KYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCS-----SEEE-ETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCS
T ss_pred cCCCccCChHHh-----CcCE-eCCCCChhhHHHHHHHHHhC-CcCcCCCccccc
Confidence 348999988752 2332 33689999999996555544 899999999854
No 62
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=64.63 E-value=5.4 Score=34.76 Aligned_cols=47 Identities=30% Similarity=0.713 Sum_probs=33.4
Q ss_pred cccccccccccccCCCCceeecCCCCCCcchhhHHHHHh--hcCCCCCCCcccccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERR--EGNQACPQCKTRYKR 90 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeyerk--eG~q~CPqCKt~Ykr 90 (791)
..|.||-+.+- ++.+ . .|+--.|+.|..--.+ .+...||.|++++..
T Consensus 22 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIK-----EPVS-T-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCS-----SCCB-C-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhc-----CeEE-C-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 48999988652 1222 2 6888999999975554 344689999998853
No 63
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=64.00 E-value=5.7 Score=35.23 Aligned_cols=48 Identities=27% Similarity=0.605 Sum_probs=36.6
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
...|.||-+.+- ++.+ . .|+--.|+.|..--.+.++..||.|+.++..
T Consensus 23 ~~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILA-----DPVE-T-SCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCS-----SEEE-C-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhc-----CcEE-c-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 348999987752 2333 3 6899999999977777767899999999854
No 64
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=63.95 E-value=4.2 Score=38.45 Aligned_cols=47 Identities=23% Similarity=0.554 Sum_probs=37.3
Q ss_pred cccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
-.|.||.+.+- ++ |.+ .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 19 ~~C~IC~~~~~-----~p-v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCChhhc-----Cc-EEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 38999998643 23 446 7999999999988777777799999988754
No 65
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.78 E-value=10 Score=31.38 Aligned_cols=46 Identities=24% Similarity=0.541 Sum_probs=34.0
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
...|.||-+.+.- +.+ -.|+--.|+.|..--.+ ....||.|++++.
T Consensus 15 ~~~C~IC~~~~~~-----p~~--~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN-----PVV--TKCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS-----EEE--CTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcC-----eeE--ccCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence 4589999887621 333 26888889999965554 3679999999984
No 66
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=63.55 E-value=4.9 Score=37.03 Aligned_cols=45 Identities=29% Similarity=0.660 Sum_probs=32.0
Q ss_pred ccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
.|.||-+..- ++ |.. .|+--.|+.|..--. ..+..||.|+++++.
T Consensus 55 ~C~iC~~~~~-----~~-~~~-~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 55 QCIICSEYFI-----EA-VTL-NCAHSFCSYCINEWM-KRKIECPICRKDIKS 99 (138)
T ss_dssp BCTTTCSBCS-----SE-EEE-TTSCEEEHHHHHHHT-TTCSBCTTTCCBCCC
T ss_pred CCcccCcccC-----Cc-eEC-CCCCCccHHHHHHHH-HcCCcCCCCCCcCCC
Confidence 6999988652 12 223 578889999985443 345789999998853
No 67
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.19 E-value=5.9 Score=32.12 Aligned_cols=49 Identities=22% Similarity=0.521 Sum_probs=34.5
Q ss_pred cCCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 34 LSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
.....|.||-+.+.. . +.. .|+--.|+.|..--.+. +..||-|+.++..
T Consensus 13 ~~~~~C~IC~~~~~~-----~-~~~-~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVH-----P-VSL-PCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSS-----E-EEE-TTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCC-----C-EEc-cCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 455689999887521 1 222 47888999999643444 3799999999864
No 68
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=62.38 E-value=2.6 Score=49.22 Aligned_cols=53 Identities=38% Similarity=0.977 Sum_probs=40.6
Q ss_pred CCcccccccccccccCC---CCceeecCCCC--------------------CCcchhhH-HHH----Hh---hcCCCCCC
Q 003854 35 SGQTCQICEDEIEITDN---GEPFVACNECA--------------------FPVCRPCY-EYE----RR---EGNQACPQ 83 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~---Ge~fvaC~eC~--------------------FpvCr~Cy-eye----rk---eG~q~CPq 83 (791)
...+|.-|=.++---.| +=+|+-|..|+ ||.|..|. ||+ || +. -+||.
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp-~aCp~ 94 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQP-VACPE 94 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTT-CCCTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCC-CcCcc
Confidence 45599999988753332 55899999994 99999996 465 44 44 39999
Q ss_pred Ccccc
Q 003854 84 CKTRY 88 (791)
Q Consensus 84 CKt~Y 88 (791)
|+=++
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 99887
No 69
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=62.34 E-value=3.7 Score=36.35 Aligned_cols=55 Identities=25% Similarity=0.666 Sum_probs=40.4
Q ss_pred cCCccccccccccccc-CCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 34 LSGQTCQICEDEIEIT-DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 34 ~~~~~C~iCgd~vg~~-~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
.....|.||-+.+... +.+...+.+ .|+-..|..|.+--.+. +..||.|++.+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 3455899998886543 345555655 89999999999655544 4699999999853
No 70
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.46 E-value=7.8 Score=30.50 Aligned_cols=42 Identities=29% Similarity=0.740 Sum_probs=31.0
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhh--cCCCCCCC
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERRE--GNQACPQC 84 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeyerke--G~q~CPqC 84 (791)
...|.||-+.+- ++.+. .|+--.|+.|.+--.+. ++..||.|
T Consensus 20 ~~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCS-----SCEEC--TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCchhC-----CeEEe--CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 458999988753 23332 68999999999766654 56789988
No 71
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=61.19 E-value=5.3 Score=33.82 Aligned_cols=48 Identities=21% Similarity=0.551 Sum_probs=34.1
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHh-hcCCCCCCCccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERR-EGNQACPQCKTRYK 89 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeyerk-eG~q~CPqCKt~Yk 89 (791)
.-.|.||-+..- ++. .-..|+--.|+.|.+--.+ .+...||.|++++.
T Consensus 13 ~~~C~IC~~~~~-----~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 13 ELLCLICKDIMT-----DAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTEETTTTEECS-----SCE-ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCCChhhc-----Cce-ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 458999997542 232 2223899999999975544 35579999999873
No 72
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.64 E-value=5.3 Score=35.68 Aligned_cols=45 Identities=24% Similarity=0.509 Sum_probs=33.0
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
...|.||-+... ++.+.. .|+--.|+.|..--.+ ..||.|++++.
T Consensus 22 ~~~C~IC~~~~~-----~pv~~~-~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILR-----EPVCLG-GCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCS-----SCBCCC-SSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhh-----CccEeC-CCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 458999987652 343332 5899999999965444 78999999984
No 73
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.92 E-value=4.7 Score=34.52 Aligned_cols=47 Identities=23% Similarity=0.737 Sum_probs=34.1
Q ss_pred cccccccccccccCCCCceeecCCCCCCcchhhHHHH-HhhcCCCCCCCccccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKTRYK 89 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeye-rkeG~q~CPqCKt~Yk 89 (791)
..|.||-+.|.. | ..|..|+-..=..|..-= +..++..||.|++...
T Consensus 16 ~~C~IC~~~i~~---g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSS---S---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhhHccc---C---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 489999999863 3 467777777667887432 4445589999998874
No 74
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=57.54 E-value=3.2 Score=33.97 Aligned_cols=48 Identities=31% Similarity=0.843 Sum_probs=33.9
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhh------cCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERRE------GNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeyerke------G~q~CPqCKt~Ykr 90 (791)
...|.||-+...- +.+ . .|+--.|+.|..--.+. +...||.|++++..
T Consensus 12 ~~~C~IC~~~~~~-----p~~-l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTE-----PLS-L-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSS-----CCC-C-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCC-----eeE-C-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4589999887521 222 2 58889999999644333 36799999999853
No 75
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.18 E-value=6.5 Score=31.56 Aligned_cols=47 Identities=23% Similarity=0.650 Sum_probs=34.3
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~ 91 (791)
...|.||-+.... ...+ |+--.|+.|..- .-..+..||-|++++...
T Consensus 15 ~~~C~IC~~~~~~-----~~~~---CgH~fc~~Ci~~-~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 15 EEECCICMDGRAD-----LILP---CAHSFCQKCIDK-WSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCSSSCCSCCS-----EEET---TTEEECHHHHHH-SSCCCSSCHHHHHCTTCC
T ss_pred CCCCeeCCcCccC-----cccC---CCCcccHHHHHH-HHHCcCcCCCcCCcccCC
Confidence 4589999887432 4444 577789999954 334678999999998643
No 76
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=56.56 E-value=7.2 Score=34.45 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=34.0
Q ss_pred CcccccccccccccCCCCceeecCCCC-CCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECA-FPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~-FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
.-+|.||.+- +. ++.+. .|+ .-.||.|.+--.++ +..||.|++++.
T Consensus 22 ~~~CpI~~~~-m~----dPV~~--~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~ 68 (98)
T 1wgm_A 22 EFLDPIMSTL-MC----DPVVL--PSSRVTVDRSTIARHLLS-DQTDPFNRSPLT 68 (98)
T ss_dssp TTBCTTTCSB-CS----SEEEC--TTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred hcCCcCcccc-cc----CCeEC--CCCCeEECHHHHHHHHHh-CCCCCCCCCCCC
Confidence 4489999753 33 24332 478 99999999777665 679999999884
No 77
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=56.52 E-value=3.2 Score=41.33 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=21.5
Q ss_pred cCCcccccccccccccCCCCceeecCCCCCCcchhhHH
Q 003854 34 LSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYE 71 (791)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cye 71 (791)
....+|++||+.|+-. +=++|++|++
T Consensus 161 ~~~~~C~~CGE~~~~~------------g~~~C~~C~~ 186 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQ------------DGELCLSCQG 186 (191)
T ss_dssp CCEEECTTTCCEEEGG------------GCSSCHHHHT
T ss_pred cCCEECCcCCCChhhC------------CCcCCccccC
Confidence 4667999999998865 5589999984
No 78
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=54.68 E-value=7.6 Score=32.72 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=23.7
Q ss_pred cCCcccccccccccccCCCCceeecCCCCCCc
Q 003854 34 LSGQTCQICEDEIEITDNGEPFVACNECAFPV 65 (791)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~Fpv 65 (791)
.-.-+|.-||.++.+... .-+-|.+|++.|
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~--~~iRC~~CG~RI 48 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAK--EVIRCRECGHRV 48 (63)
T ss_dssp CCCCBCSSSCCBCCCCSS--SCCCCSSSCCCC
T ss_pred CeEEECCCCCCeeecCCC--CceECCCCCcEE
Confidence 345699999999998854 338899999876
No 79
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=54.20 E-value=11 Score=33.86 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=36.2
Q ss_pred CCccccccccccccc----------CCCC-ceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 35 SGQTCQICEDEIEIT----------DNGE-PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~----------~~Ge-~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
....|.||-+.+... ..|+ .-+.--.|+--.++.|..-=. ..+..||-|+..|+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHH-TTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHH-HcCCcCcCCCCcce
Confidence 456899998886643 1122 122233789999999984433 44789999999964
No 80
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=53.65 E-value=6.3 Score=44.54 Aligned_cols=36 Identities=17% Similarity=0.477 Sum_probs=30.3
Q ss_pred cCCcccccccccc-cccCCCCceeecCCCCCCcchhhHHH
Q 003854 34 LSGQTCQICEDEI-EITDNGEPFVACNECAFPVCRPCYEY 72 (791)
Q Consensus 34 ~~~~~C~iCgd~v-g~~~~Ge~fvaC~eC~FpvCr~Cyey 72 (791)
.....|..|++-+ |+.-.| ..|..|+|.||+-|...
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg---~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQG---YRCHRCRASAHKECLGR 563 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCE---EEETTTCCEECSGGGGG
T ss_pred CCCcccccccccccccccCC---cCCCCCCCccchhhhhc
Confidence 3456999999997 876666 78999999999999965
No 81
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=53.20 E-value=5.9 Score=35.03 Aligned_cols=54 Identities=26% Similarity=0.673 Sum_probs=39.3
Q ss_pred CCcccccccccccccC-CCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 35 SGQTCQICEDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~-~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
+...|.||-+...-.. +|+..+.- .|+--.|+.|.+--.+.. ..||.|++.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA-NTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTC-SBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHhC-CCCCCCCCcCcc
Confidence 3458999998865432 45544544 789999999996555544 699999999854
No 82
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=50.72 E-value=10 Score=38.78 Aligned_cols=49 Identities=22% Similarity=0.689 Sum_probs=39.0
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHH-HhhcCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeye-rkeG~q~CPqCKt~Ykr 90 (791)
-..|.+|-+-|.. | +.|..|+-..=+.|+.-- +..++..||.|++....
T Consensus 180 i~~C~iC~~iv~~---g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSS---C---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhC---C---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 5589999999874 3 889889999989999654 44456799999998743
No 83
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=49.08 E-value=11 Score=41.39 Aligned_cols=47 Identities=26% Similarity=0.669 Sum_probs=33.1
Q ss_pred cccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
..|.||-+..- + -... .|+=-.|..|..--.+.....||-|+++...
T Consensus 333 ~~C~ICle~~~---~-pv~l---pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDK---D-VKIE---PCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBC---C-EEEE---TTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCccCcCCC---C-eEEe---CCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 58999977641 1 1234 4566669999965454467899999998865
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=48.48 E-value=6.4 Score=32.97 Aligned_cols=53 Identities=26% Similarity=0.619 Sum_probs=36.7
Q ss_pred CCcccccccccccccCCCCceeecCCCCCCcchhhHHHHH---hhcCCCCCCCccccccc
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYER---REGNQACPQCKTRYKRL 91 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeyer---keG~q~CPqCKt~Ykr~ 91 (791)
....|.+|+.. .+|+..+.|..|.--.=-.|..... .+|.-.||.|....++.
T Consensus 17 ~~~~C~~C~~~----~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKP----DDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBC----CSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCC----CCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 34589999875 4688899999885443345654332 24778999998876543
No 85
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=47.99 E-value=9.2 Score=45.39 Aligned_cols=57 Identities=30% Similarity=0.762 Sum_probs=42.5
Q ss_pred cCCcccccccccccccCC---CCceeecCCCC--------------------CCcchhhHH-HH----Hh---hcCCCCC
Q 003854 34 LSGQTCQICEDEIEITDN---GEPFVACNECA--------------------FPVCRPCYE-YE----RR---EGNQACP 82 (791)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~---Ge~fvaC~eC~--------------------FpvCr~Cye-ye----rk---eG~q~CP 82 (791)
....+|.-|=.++---.| .-+|+.|..|+ ||.|..|.. |+ || +. -+||
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp-~aC~ 187 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQP-VACF 187 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTT-CCCT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCC-CcCC
Confidence 455689999988753332 55899999998 999999973 44 33 44 3899
Q ss_pred CCccccccc
Q 003854 83 QCKTRYKRL 91 (791)
Q Consensus 83 qCKt~Ykr~ 91 (791)
.|+=++.-.
T Consensus 188 ~CGP~l~l~ 196 (761)
T 3vth_A 188 DCGPSLSFV 196 (761)
T ss_dssp TTSCCEEEE
T ss_pred ccCCeeEEe
Confidence 999888543
No 86
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=47.64 E-value=9.3 Score=40.80 Aligned_cols=35 Identities=20% Similarity=0.551 Sum_probs=29.0
Q ss_pred cCCcccccccccc-cccCCCCceeecCCCCCCcchhhHH
Q 003854 34 LSGQTCQICEDEI-EITDNGEPFVACNECAFPVCRPCYE 71 (791)
Q Consensus 34 ~~~~~C~iCgd~v-g~~~~Ge~fvaC~eC~FpvCr~Cye 71 (791)
.....|..|+.-+ |+...| ..|..|++.||+.|..
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg---~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQG---YRCYRCRAPAHKECLG 390 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCE---EEETTTCCEECGGGGG
T ss_pred CCCCCCccccchhceeCCCC---CCCCCCcCccchhhhh
Confidence 3556999999997 676555 6799999999999995
No 87
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=46.12 E-value=15 Score=28.74 Aligned_cols=45 Identities=24% Similarity=0.625 Sum_probs=31.8
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~ 91 (791)
...|.||-+..-. -... .|+--.|+.|..- ....||.|++.+...
T Consensus 6 ~~~C~IC~~~~~~----p~~l---~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQCQAEAKC----PKLL---PCLHTLCSGCLEA----SGMQCPICQAPWPLG 50 (56)
T ss_dssp CSSCSSSCSSCBC----CSCS---TTSCCSBTTTCSS----SSSSCSSCCSSSSCC
T ss_pred CCCceEeCCccCC----eEEc---CCCCcccHHHHcc----CCCCCCcCCcEeecC
Confidence 3479999886531 1223 4677789999743 678999999988654
No 88
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=46.11 E-value=9.4 Score=30.90 Aligned_cols=48 Identities=21% Similarity=0.493 Sum_probs=33.0
Q ss_pred cCCcccccccccccccCCCCcee--ecCCCCCC-cchhhHHHHHhhcCCCCCCCccccc
Q 003854 34 LSGQTCQICEDEIEITDNGEPFV--ACNECAFP-VCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fv--aC~eC~Fp-vCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
.....|.||-+...- -+|+ +| +-- .|..|.+--. ..+..||-|+.+..
T Consensus 6 ~~~~~C~IC~~~~~~----~~~~~~pC---gH~~~C~~C~~~~~-~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN----GCIVHGKT---GHLMACFTCAKKLK-KRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC----EEEEETTE---EEEEECHHHHHHHH-HTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC----EEEECCCC---CChhhHHHHHHHHH-HcCCcCCCcCcchh
Confidence 345589999876321 1455 55 555 6999997554 45578999999875
No 89
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.99 E-value=21 Score=29.34 Aligned_cols=45 Identities=20% Similarity=0.612 Sum_probs=31.9
Q ss_pred cCCcccccccccccccCCCCceeecCCCCCC-cchhhHHHHHhhcCCCCCCCcccccc
Q 003854 34 LSGQTCQICEDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~Fp-vCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
.....|.||-+.. .--+|++| +-- +|..|.. ..+.||-|+++...
T Consensus 13 ~~~~~C~IC~~~~----~~~v~~pC---gH~~~C~~C~~-----~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT----VNWVLLPC---RHTCLCDGCVK-----YFQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC----CCCEETTT---TBCCSCTTHHH-----HCSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCC----CCEEEECC---CChhhhHHHHh-----cCCCCCCCCcchhc
Confidence 3456899997752 22356676 434 8999996 24899999998854
No 90
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=45.75 E-value=1.9 Score=36.84 Aligned_cols=44 Identities=23% Similarity=0.555 Sum_probs=32.0
Q ss_pred eeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCcCCCCCc
Q 003854 55 FVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEE 103 (791)
Q Consensus 55 fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~kGsprv~gd~ee 103 (791)
+.+| |+|+.=.+|...+|.-.|+.|+..|-...|-|..--||..
T Consensus 8 iL~C-----P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear 51 (70)
T 2js4_A 8 ILVC-----PVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEAEAR 51 (70)
T ss_dssp CCBC-----TTTCCBEEEETTTTEEEETTTTEEEEEETTEECCCGGGSE
T ss_pred heEC-----CCCCCcCEEeCCCCEEEcCCCCceecCCCCeeeeChhhcc
Confidence 4566 4455445556667888999999999999888877666533
No 91
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=45.51 E-value=7 Score=32.29 Aligned_cols=50 Identities=22% Similarity=0.641 Sum_probs=36.0
Q ss_pred ccccCCcccccccccccccCCCCceeecCCCCCCcchhhHHH---HHhhcCCCCCCCccc
Q 003854 31 VKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKTR 87 (791)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyey---erkeG~q~CPqCKt~ 87 (791)
+...+...|.+|++. | ..+.|..|.-..=..|+.- +.-+|.-.||.|...
T Consensus 3 ~~~~~~~~C~vC~~~------g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 3 MAQKNEDECAVCRDG------G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSCCCSBSSSSCC------S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred cCCCCCCCCccCCCC------C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 445567799999963 3 5788999976666677752 244688899999754
No 92
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.60 E-value=13 Score=30.58 Aligned_cols=43 Identities=33% Similarity=0.711 Sum_probs=29.9
Q ss_pred CcccccccccccccCCCCceeecCCCCCC-cchhhHHHHHhhcCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~Fp-vCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
...|.||-+..- --++++ |+-- .|+.|.+ ....||-|++++..
T Consensus 25 ~~~C~IC~~~~~----~~~~~p---CgH~~~C~~C~~-----~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVP---CGHLVTCKQCAE-----AVDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSS---SCCCCBCHHHHH-----HCSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCC----CEEEec---CCCHHHHHHHhh-----CCCCCccCCceecC
Confidence 347999977631 123455 5666 7999983 24799999998854
No 93
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=43.76 E-value=7.2 Score=36.55 Aligned_cols=45 Identities=22% Similarity=0.601 Sum_probs=35.8
Q ss_pred cccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Y 88 (791)
-.|.||.+-+- ++ |.. .|+--.|+.|..--.+.++..||.|+++.
T Consensus 32 ~~C~IC~~~~~-----~p-v~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 32 YLCSACRNVLR-----RP-FQA-QCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCCCCChhhc-----Cc-EEC-CCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 48999987642 23 334 89999999999887788888999999865
No 94
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=43.51 E-value=7.2 Score=33.08 Aligned_cols=56 Identities=25% Similarity=0.554 Sum_probs=42.3
Q ss_pred cccccCCcccccccccccccCCCCceeecCCCCCCcchhhHHHH-HhhcCCCCCCCccc
Q 003854 30 SVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKTR 87 (791)
Q Consensus 30 ~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeye-rkeG~q~CPqCKt~ 87 (791)
+....+...|.||++. -..+++..+.|..|.-.+=..||.-. .-+|.=.||.|...
T Consensus 10 ~~~~~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 10 QSLIDEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCCCCSSCSCSSSCCC--CCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCCCCCCCCCC--CCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4445667799999874 23466788999999888888898654 44788899999753
No 95
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=43.14 E-value=18 Score=32.60 Aligned_cols=24 Identities=25% Similarity=0.112 Sum_probs=16.5
Q ss_pred CcchhhHHHHHhhcC-CCCCCCccccc
Q 003854 64 PVCRPCYEYERREGN-QACPQCKTRYK 89 (791)
Q Consensus 64 pvCr~CyeyerkeG~-q~CPqCKt~Yk 89 (791)
|.|+.||.- +-+. ..|-.|+.+-.
T Consensus 56 ~yC~~cy~~--~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 56 ILCRNDYIR--LFGNSGAGGSGGHMGS 80 (122)
T ss_dssp EECHHHHHH--HHCCCCSSSCSSCCSC
T ss_pred eecHHHHHH--HcCCCCccccCCCCcC
Confidence 459999843 3343 37999998763
No 96
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=42.60 E-value=14 Score=33.14 Aligned_cols=46 Identities=22% Similarity=0.486 Sum_probs=27.5
Q ss_pred cccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcC-CCCCCCcccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN-QACPQCKTRY 88 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~-q~CPqCKt~Y 88 (791)
-.|..|+..+. ..|..|+.= =+-|.|+.||.- .-+. ..|..|+++.
T Consensus 30 F~C~~C~~~L~--~~~~~~~~~--~g~~yC~~~y~~--~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 30 LSCDLCGCRLG--EVGRRLYYK--LGRKLCRRDYLR--LFGQDGLCASCDKRI 76 (131)
T ss_dssp CBCTTTCCBCS--STTCCEEEE--TTEEECHHHHHH--HHCCCEECTTTCCEE
T ss_pred cccCcCCCccc--cCCCeEEEE--CCEEeecCchhh--hCCCccChhhcCCcc
Confidence 36777777653 223333321 135789999943 2332 3899999876
No 97
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=41.21 E-value=9.3 Score=30.65 Aligned_cols=32 Identities=28% Similarity=0.790 Sum_probs=26.2
Q ss_pred CcccccccccccccCCCCceeecCCC-CCCcchhhHHHH
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNEC-AFPVCRPCYEYE 73 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC-~FpvCr~Cyeye 73 (791)
+..|..|+..|| .-.-|.+| .|-+|..||.-.
T Consensus 6 ~~~Cd~C~~~ig------~R~~C~~C~dyDLC~~C~~~~ 38 (52)
T 1tot_A 6 VYTCNECKHHVE------TRWHCTVCEDYDLCINCYNTK 38 (52)
T ss_dssp CEEETTTTEEES------SEEEESSSSSCEECHHHHHHH
T ss_pred EEECCCCCCCCc------ceEEcCCCCCchhHHHHHhCC
Confidence 357999999853 46899999 899999999653
No 98
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.18 E-value=41 Score=25.49 Aligned_cols=42 Identities=21% Similarity=0.709 Sum_probs=29.9
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhh--cCCCCCCC
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERRE--GNQACPQC 84 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeyerke--G~q~CPqC 84 (791)
...|.||-+.+.- . ... .|+--.|+.|..--.++ ++..||.|
T Consensus 15 ~~~C~IC~~~~~~---p-~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKE---P-VII---ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSS---C-CCC---SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcccCc---c-EeC---CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4589999987532 1 222 57888899999665443 67899988
No 99
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=39.33 E-value=11 Score=33.00 Aligned_cols=54 Identities=26% Similarity=0.581 Sum_probs=41.0
Q ss_pred ccCCcccccccccccccCCCCceeecCCCCCCcchhhHHHH-HhhcCCCCCCCcccc
Q 003854 33 ELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKTRY 88 (791)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeye-rkeG~q~CPqCKt~Y 88 (791)
..+...|.||++. -..+++..+-|..|.-.+=..||.-. .-+|.=.||.|...-
T Consensus 22 ~~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSS--SSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCC--CCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 3466799999964 22466789999999888788898643 457889999997654
No 100
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=38.85 E-value=2.3 Score=36.10 Aligned_cols=43 Identities=16% Similarity=0.484 Sum_probs=31.2
Q ss_pred eeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCcCCCCC
Q 003854 55 FVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEE 102 (791)
Q Consensus 55 fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~kGsprv~gd~e 102 (791)
..+| |+|+-=.+|.+.+|.-+|+.|+..|-...|-|..--||.
T Consensus 8 iL~C-----P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ea 50 (68)
T 2hf1_A 8 ILVC-----PLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEA 50 (68)
T ss_dssp ECBC-----TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCGGGC
T ss_pred heEC-----CCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeeeChhhc
Confidence 4566 444444455566788899999999999988887766643
No 101
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=38.30 E-value=25 Score=31.65 Aligned_cols=52 Identities=21% Similarity=0.512 Sum_probs=39.4
Q ss_pred Cccccccccccc--ccCCCCceeecCCCCCCcchhhHHH------HHhhcCCCCCCCccc
Q 003854 36 GQTCQICEDEIE--ITDNGEPFVACNECAFPVCRPCYEY------ERREGNQACPQCKTR 87 (791)
Q Consensus 36 ~~~C~iCgd~vg--~~~~Ge~fvaC~eC~FpvCr~Cyey------erkeG~q~CPqCKt~ 87 (791)
..+|.+|...=. .+.+++.++.|..|+-..=..|..+ ..++++=.||.|++=
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C 64 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTC 64 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCB
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCcc
Confidence 358999976533 3356778999999988887788854 356889999999853
No 102
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.80 E-value=20 Score=30.03 Aligned_cols=62 Identities=21% Similarity=0.505 Sum_probs=32.2
Q ss_pred ccccCCcccccccccccc----cCCCCce----eecCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCC
Q 003854 31 VKELSGQTCQICEDEIEI----TDNGEPF----VACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSP 95 (791)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~----~~~Ge~f----vaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~kGsp 95 (791)
.+......|..|+..|.. .+.|..+ ..|.+|.-++=.-.|-.-.++|. +=|+.-|.+...+|
T Consensus 10 ~~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~---~yC~~~y~~~~~~~ 79 (82)
T 2co8_A 10 QEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGH---FYCLQHLPQTDSGP 79 (82)
T ss_dssp CCCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCC---CEETTTCCCCCCCC
T ss_pred cCCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCE---EEChHHHHhhhcCC
Confidence 444556799999999853 3455544 23555544443333310024554 33455565554443
No 103
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=36.78 E-value=5.4 Score=36.39 Aligned_cols=31 Identities=13% Similarity=0.536 Sum_probs=20.2
Q ss_pred ceeecCCCCCCcchhhHHHHHhhcCC-CCCCCccccccc
Q 003854 54 PFVACNECAFPVCRPCYEYERREGNQ-ACPQCKTRYKRL 91 (791)
Q Consensus 54 ~fvaC~eC~FpvCr~CyeyerkeG~q-~CPqCKt~Ykr~ 91 (791)
...-|.+|++. ++..+-.. .||.|+.+-.+.
T Consensus 72 ~~~~C~~CG~~-------~e~~~~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 72 VELECKDCSHV-------FKPNALDYGVCEKCHSKNVII 103 (119)
T ss_dssp CEEECSSSSCE-------ECSCCSTTCCCSSSSSCCCEE
T ss_pred ceEEcCCCCCE-------EeCCCCCCCcCccccCCCcEE
Confidence 35667777643 33344456 899999986654
No 104
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=36.42 E-value=22 Score=28.90 Aligned_cols=47 Identities=23% Similarity=0.725 Sum_probs=35.7
Q ss_pred ccCCcccccccccccccCCCCceeecCCCCCCcchhhHHH---HHhhcCCCCCCCcc
Q 003854 33 ELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKT 86 (791)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyey---erkeG~q~CPqCKt 86 (791)
..+...|.+|++ |...+.|..|.-..=-.|..- +.-+|.-.||.|..
T Consensus 8 ~~~~~~C~vC~~-------~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQ-------GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSC-------CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCC-------CCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 445669999997 246788999987777778765 34578899999974
No 105
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=36.10 E-value=15 Score=31.44 Aligned_cols=25 Identities=20% Similarity=0.764 Sum_probs=14.9
Q ss_pred cccccccccccccCCCCceeecCCCCC
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAF 63 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~F 63 (791)
-+|.-||.++.+... + -+.|.+|+.
T Consensus 29 Y~C~~CG~~~e~~~~-d-~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-D-AVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-S-TTCCSSSCC
T ss_pred EECCCCCCcceeCCC-C-CccCCCCCc
Confidence 378888877766532 2 135666655
No 106
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.36 E-value=16 Score=30.74 Aligned_cols=38 Identities=21% Similarity=0.490 Sum_probs=24.5
Q ss_pred ccccccCCcccccccccccc----cCCCCce----eecCCCCCCcc
Q 003854 29 KSVKELSGQTCQICEDEIEI----TDNGEPF----VACNECAFPVC 66 (791)
Q Consensus 29 ~~~~~~~~~~C~iCgd~vg~----~~~Ge~f----vaC~eC~FpvC 66 (791)
+|.+.....+|..|+..|.. .+.|..+ ..|.+|.-++=
T Consensus 8 ~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~ 53 (80)
T 2dj7_A 8 KPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT 53 (80)
T ss_dssp CCCCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCS
T ss_pred CCcCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcC
Confidence 55666677799999998863 2344433 35777765543
No 107
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=35.17 E-value=4.5 Score=34.30 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=28.4
Q ss_pred CcchhhHHHHHhhcCCCCCCCccccccccCCCCcCCCCCc
Q 003854 64 PVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEE 103 (791)
Q Consensus 64 pvCr~CyeyerkeG~q~CPqCKt~Ykr~kGsprv~gd~ee 103 (791)
|+|+.=.+|...+|.-+|+.|+..|-...|-|..--||..
T Consensus 14 P~ck~~L~~~~~~g~LvC~~c~~~YPI~dGIPvmL~~Ear 53 (67)
T 2jny_A 14 PKDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLLIDEAT 53 (67)
T ss_dssp TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCSSCCE
T ss_pred CCCCCcCeEeCCCCEEEcCCCCccccCCCCEeeeChhHhc
Confidence 3333333344456778999999999999999887776543
No 108
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.41 E-value=23 Score=30.27 Aligned_cols=49 Identities=24% Similarity=0.610 Sum_probs=34.5
Q ss_pred CcccccccccccccCCCCceeecCCCCCCcchhhHHHH----HhhcC---CCCCC--Ccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE----RREGN---QACPQ--CKTRY 88 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeye----rkeG~---q~CPq--CKt~Y 88 (791)
...|.||-+.+. +..++.-..|+=.-|+.|..-- .++|. -.||+ |+..+
T Consensus 5 ~~~C~IC~~~~~----~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 5 SSGCKLCLGEYP----VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp BCCCSSSCCCCB----GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CcCCcccCcccc----cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 348999988753 3345554468889999997544 24664 47999 99874
No 109
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=33.41 E-value=24 Score=33.98 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=16.6
Q ss_pred CcchhhHHHHHhhcCC-CCCCCccccc
Q 003854 64 PVCRPCYEYERREGNQ-ACPQCKTRYK 89 (791)
Q Consensus 64 pvCr~CyeyerkeG~q-~CPqCKt~Yk 89 (791)
+.|+.||.- +-+.+ .|..|+++..
T Consensus 56 ~yC~~cy~~--~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 56 ILCRNDYIR--LFGNSGACSACGQSIP 80 (188)
T ss_dssp EECHHHHHH--HHSCCEECTTTCCEEC
T ss_pred ccccccccc--ccccCCccccCCCccc
Confidence 568999842 33443 7999998763
No 110
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=33.19 E-value=4.1 Score=34.57 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=25.4
Q ss_pred HHHHhhcCCCCCCCccccccccCCCCcCCCCCc
Q 003854 71 EYERREGNQACPQCKTRYKRLKGSPRVEGDEEE 103 (791)
Q Consensus 71 eyerkeG~q~CPqCKt~Ykr~kGsprv~gd~ee 103 (791)
+|.+.+|.-+|+.|+..|-...|-|..--||..
T Consensus 19 ~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear 51 (68)
T 2jr6_A 19 EYHQDKQELWSRQAKLAYPIKDGIPYMLENEAR 51 (68)
T ss_dssp EEETTTTEEEETTTTEEEEEETTEECCCTTTCE
T ss_pred eEeCCCCEEEcCCCCcEecCCCCeeeeChhhcc
Confidence 344456778999999999999998887766533
No 111
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=33.16 E-value=7.8 Score=36.62 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=9.6
Q ss_pred CCCCCCCccccc
Q 003854 78 NQACPQCKTRYK 89 (791)
Q Consensus 78 ~q~CPqCKt~Yk 89 (791)
...||.|+.+--
T Consensus 107 ~~~CP~Cgs~~~ 118 (139)
T 3a43_A 107 FLACPKCGSHDF 118 (139)
T ss_dssp GCSCSSSSCCCE
T ss_pred CCcCccccCCcc
Confidence 578999998854
No 112
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=32.99 E-value=14 Score=43.97 Aligned_cols=57 Identities=40% Similarity=0.861 Sum_probs=42.2
Q ss_pred cCCcccccccccccccCC---CCceeecCCCC--------------------CCcchhhH-HHH----Hh---hcCCCCC
Q 003854 34 LSGQTCQICEDEIEITDN---GEPFVACNECA--------------------FPVCRPCY-EYE----RR---EGNQACP 82 (791)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~---Ge~fvaC~eC~--------------------FpvCr~Cy-eye----rk---eG~q~CP 82 (791)
....+|.-|=.++---.| +=+|+-|..|| ||.|..|. ||+ || +. -+||
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp-~aC~ 182 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEP-TACP 182 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTT-CCCT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCC-CCCc
Confidence 455689999888643333 56899999995 99999996 455 43 33 3999
Q ss_pred CCccccccc
Q 003854 83 QCKTRYKRL 91 (791)
Q Consensus 83 qCKt~Ykr~ 91 (791)
.|+=++.-.
T Consensus 183 ~CGP~l~l~ 191 (772)
T 4g9i_A 183 VCGPSYRLY 191 (772)
T ss_dssp TTSCCEEEE
T ss_pred cCCceEEEE
Confidence 999887543
No 113
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.54 E-value=33 Score=29.56 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=32.3
Q ss_pred cccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhc-----CCCCCC--Cccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREG-----NQACPQ--CKTR 87 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG-----~q~CPq--CKt~ 87 (791)
-+|.||.+- +. ++.+.- .|+.-.||.|-+--.+++ ...||. |+..
T Consensus 8 ~~CPI~~~~-~~----dPV~~~-~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 8 FTCPITKEE-MK----KPVKNK-VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CBCTTTCSB-CS----SEEEES-SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred eECcCcCch-hc----CCEEcC-CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 489999854 32 355442 689999999987665543 468999 8876
No 114
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=32.22 E-value=21 Score=37.59 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=36.0
Q ss_pred CCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhh-cCCCCCC--Ccccccc
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERRE-GNQACPQ--CKTRYKR 90 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeyerke-G~q~CPq--CKt~Ykr 90 (791)
..-+|.||.+-+- ++ |-...||---||.|.+--.++ |...||. |+.++..
T Consensus 180 ~el~CPIcl~~f~-----DP-Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYE-----AP-LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCS-----SE-EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCccc-----CC-eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 4448999998751 23 223478989999999766554 5568999 9998743
No 115
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=31.71 E-value=24 Score=30.18 Aligned_cols=23 Identities=22% Similarity=0.596 Sum_probs=16.2
Q ss_pred CCcchhhHHHHHhhcCCCCCCCcccc
Q 003854 63 FPVCRPCYEYERREGNQACPQCKTRY 88 (791)
Q Consensus 63 FpvCr~CyeyerkeG~q~CPqCKt~Y 88 (791)
-+.|++||+ ++-+ ..|.+|+.+-
T Consensus 54 ~~yC~~cy~--~~~~-~~C~~C~~~I 76 (101)
T 2cup_A 54 KILCNKCTT--REDS-PKCKGCFKAI 76 (101)
T ss_dssp EEECHHHHT--TCCC-CBCSSSCCBC
T ss_pred EEEChhHhh--hhcC-CccccCCCcc
Confidence 467999983 2333 6899998876
No 116
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=31.38 E-value=17 Score=34.85 Aligned_cols=35 Identities=29% Similarity=0.567 Sum_probs=25.0
Q ss_pred ccccccc-cccc----ccCCCC-ceeecCCCCCCcchhhHH
Q 003854 37 QTCQICE-DEIE----ITDNGE-PFVACNECAFPVCRPCYE 71 (791)
Q Consensus 37 ~~C~iCg-d~vg----~~~~Ge-~fvaC~eC~FpvCr~Cye 71 (791)
.+|..|| .+-- +..+|+ +++--+|=-.|+||-||.
T Consensus 138 ~ic~~cg~~~a~~~~r~~~~~~~~~ig~~~~Y~~~cr~~~~ 178 (184)
T 2orw_A 138 AVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDCYN 178 (184)
T ss_dssp BCCTTTCCSCBCEEEECSSCSCSCCCCSTTTEEEECHHHHH
T ss_pred eecCCCCCeeceeEEEEcCCCCEEEECCCCcEEEccHHHHh
Confidence 4899999 5522 334555 366667888999999994
No 117
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=31.09 E-value=13 Score=37.13 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=24.2
Q ss_pred ccccccccccc----ccCCCCc-eeecCCCCCCcchhhHH
Q 003854 37 QTCQICEDEIE----ITDNGEP-FVACNECAFPVCRPCYE 71 (791)
Q Consensus 37 ~~C~iCgd~vg----~~~~Ge~-fvaC~eC~FpvCr~Cye 71 (791)
.+|..||.+-- ++++|+. .|-=+|=-.|+||-||.
T Consensus 152 aiC~~Cg~~A~~~~R~~~~~~~i~IGg~e~Y~~~CR~c~~ 191 (195)
T 1w4r_A 152 AVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYF 191 (195)
T ss_dssp EECTTTCSEECEEEESSCCCSSCCCCCTTTEEEECHHHHT
T ss_pred eEecccCCeeeeEEEEcCCCCEEEECCCCcEEEccHHHhh
Confidence 48999998722 2335553 44445778899999994
No 118
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=29.59 E-value=33 Score=28.56 Aligned_cols=47 Identities=26% Similarity=0.607 Sum_probs=35.8
Q ss_pred cCCcccccccccccccCCCCceeecCCCCCCcchhhHHHH---HhhcCCCCCCCccc
Q 003854 34 LSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE---RREGNQACPQCKTR 87 (791)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeye---rkeG~q~CPqCKt~ 87 (791)
..+..|.+|++ |...+-|..|.-..=-.|+.-- .-+|.=.||.|...
T Consensus 10 ~~~~~C~vC~~-------~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGD-------GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSC-------CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCC-------CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 35568999985 3347889999988888998533 33788899999753
No 119
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.35 E-value=33 Score=28.55 Aligned_cols=37 Identities=22% Similarity=0.586 Sum_probs=22.5
Q ss_pred cccCCccccccccccc---ccCCCCce----eecCCCCCCcchh
Q 003854 32 KELSGQTCQICEDEIE---ITDNGEPF----VACNECAFPVCRP 68 (791)
Q Consensus 32 ~~~~~~~C~iCgd~vg---~~~~Ge~f----vaC~eC~FpvCr~ 68 (791)
......+|..|+..|. +.+.|..+ ..|..|.-++=..
T Consensus 11 ~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~ 54 (79)
T 2cor_A 11 RGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTAD 54 (79)
T ss_dssp CCCCCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTT
T ss_pred hccCCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCC
Confidence 3455679999999876 22345443 3477776555444
No 120
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=29.16 E-value=28 Score=34.50 Aligned_cols=54 Identities=24% Similarity=0.509 Sum_probs=36.4
Q ss_pred CCcccccccccccccCCCCceeecCCCCCCcchhhHHH-----HHh-----hcCCCCCCCcccc
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEY-----ERR-----EGNQACPQCKTRY 88 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyey-----erk-----eG~q~CPqCKt~Y 88 (791)
+|+.|.+|+..-.-++.+...+.|..|..=+=..|-.. +.- ...=.||.|....
T Consensus 1 ~G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 1 SGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp -CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 47899999876554444567999999987665555432 221 1357999998653
No 121
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=28.68 E-value=26 Score=28.18 Aligned_cols=47 Identities=19% Similarity=0.536 Sum_probs=31.8
Q ss_pred CcccccccccccccCCCCcee--ecCCCCCC-cchhhHHHHHhhcCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFV--ACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fv--aC~eC~Fp-vCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
...|.||-+.-. --.++ +| +-- .|..|..--.+ .+..||-|+.+.+.
T Consensus 7 ~~~C~IC~~~~~----~~~~~~~pC---gH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPR----DGNIIHGRT---GHLVTCFHCARRLKK-AGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBS----CEEEEETTE---EEEEECHHHHHHHHH-TTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCC----CeEEEecCC---CCHhHHHHHHHHHHH-hCCcCCCcCchhhc
Confidence 458999987521 11244 55 444 79999975544 44799999998753
No 122
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.33 E-value=57 Score=27.61 Aligned_cols=36 Identities=19% Similarity=0.425 Sum_probs=22.3
Q ss_pred ccccccCCcccccccccccc----cCCCCce----eecCCCCCC
Q 003854 29 KSVKELSGQTCQICEDEIEI----TDNGEPF----VACNECAFP 64 (791)
Q Consensus 29 ~~~~~~~~~~C~iCgd~vg~----~~~Ge~f----vaC~eC~Fp 64 (791)
++.+......|..|+..|.- .+.|..+ ..|.+|.-+
T Consensus 8 ~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~ 51 (91)
T 2d8y_A 8 MKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNK 51 (91)
T ss_dssp SCSCSSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCB
T ss_pred CccCCCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCC
Confidence 44555567899999998853 3456554 235566433
No 123
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=28.29 E-value=14 Score=34.10 Aligned_cols=54 Identities=22% Similarity=0.339 Sum_probs=0.9
Q ss_pred CCcccccccccccccC-----------CCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 35 SGQTCQICEDEIEITD-----------NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~-----------~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
....|.||-+++.... .++..+.-..|+--.|+.|-.-=. ..+..||-|+.+|+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl-~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHH-HcCCcCCCCCCeee
Confidence 4468999999876421 222233334678888999974333 33689999999875
No 124
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=28.18 E-value=12 Score=43.30 Aligned_cols=45 Identities=11% Similarity=-0.015 Sum_probs=18.1
Q ss_pred cccccc-cccccc--CCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccc
Q 003854 38 TCQICE-DEIEIT--DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (791)
Q Consensus 38 ~C~iCg-d~vg~~--~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~ 87 (791)
.|..|| .++... ..|..|..| |+||-|+.-.-. +-....||+ +.+
T Consensus 574 ~CP~Cg~g~l~~r~~k~G~~f~gC--s~yp~C~f~~~~--~p~~~~Cp~-~~~ 621 (633)
T 2gai_A 574 FYLKCECGKTRSVKNDEIAVIDDG--KIFLGRKDSESG--SPDGRSVEG-KGN 621 (633)
T ss_dssp EEEECSSSCCEECCTTSBCEEETT--EEEC-----------------------
T ss_pred cCcccCCCcceeecccCCCeEEeC--CCCcCCCCeecC--CccCCcCCC-CCe
Confidence 499998 665443 367789999 566666544321 223478998 644
No 125
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=27.79 E-value=21 Score=28.92 Aligned_cols=53 Identities=19% Similarity=0.511 Sum_probs=34.2
Q ss_pred CCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHh----hcCCCCCCCcccccc
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERR----EGNQACPQCKTRYKR 90 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyeyerk----eG~q~CPqCKt~Ykr 90 (791)
.+..|.+|+..- .+++..|+|..|.--.=-.|...... -..-.||.|..+..|
T Consensus 5 e~~~C~~C~~~~---~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~ 61 (64)
T 1we9_A 5 SSGQCGACGESY---AADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp SCCCCSSSCCCC---CSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCCcc---CCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCC
Confidence 345899998753 34678999998854433345443322 256789999875544
No 126
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=27.52 E-value=56 Score=33.19 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=45.3
Q ss_pred CCCCEEEEecCC---CCCChHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCccccchhhhhhhhccccccCCCcc
Q 003854 560 SNAPYLLNVDCD---HYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPI 636 (791)
Q Consensus 560 tngpfILnlDcD---~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n~n~vFfdii~~grDG~qgp~ 636 (791)
+++.+++.+|+| + --+|+.+.+.+ +.|.+|..---|..=.+ . +..-.. .|-.. ..++ ...
T Consensus 52 ~~~dhllfIDAD~~~I-~FdPe~V~rLl------~~g~DVV~GsYp~K~~~----~-~s~~a~-~y~~~--i~~~--~V~ 114 (203)
T 2c0n_A 52 KDYDTLAFLDEDVVPI-EIDFQKVEAKF------NEGYDVVCGYYYLKTLR----G-YSVYRK-DWEKE--IFDG--EVN 114 (203)
T ss_dssp TTCCEEEEECTTEEEE-ECCHHHHHHHH------HHTCSEEEEECBCTTSS----S-BSEESS-SBCSS--CCCE--ECS
T ss_pred CCCCEEEEEeCCCCcc-ccCHHHHHHHH------hCCCCEEEEEeeccCCC----c-cchHHH-HHHHh--ccCc--eee
Confidence 678999999999 8 47888888877 12333433322322111 1 111111 11111 1111 456
Q ss_pred ccccch-hhhhhhhcCCCCC
Q 003854 637 YVGTGC-VFRRQALYGYDAP 655 (791)
Q Consensus 637 y~GTGc-v~RR~AL~G~~Pp 655 (791)
++|||+ ++||++|..+..|
T Consensus 115 d~~tGF~lIkR~V~e~L~~p 134 (203)
T 2c0n_A 115 GCGLGFTFIKREFLEKIKRP 134 (203)
T ss_dssp EECSSEEEEEHHHHTTSCSS
T ss_pred eccccEEEEhHHHHHHHhhh
Confidence 999998 5699999888666
No 127
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=27.50 E-value=33 Score=27.91 Aligned_cols=46 Identities=26% Similarity=0.731 Sum_probs=34.4
Q ss_pred CCcccccccccccccCCCCceeecCCCCCCcchhhHHH---HHhhcCCCCCCCccc
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKTR 87 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyey---erkeG~q~CPqCKt~ 87 (791)
+...|.+|++ |...+.|..|.-..=..|..- +.-+|.=.||.|..+
T Consensus 8 ~~~~C~vC~~-------~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKD-------GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCC-------CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCC-------CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 5668999996 345788999987777778762 244788899999753
No 128
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=27.48 E-value=23 Score=38.07 Aligned_cols=43 Identities=30% Similarity=0.754 Sum_probs=30.8
Q ss_pred CcccccccccccccCCCCceeecCCCCCC-cchhhHHHHHhhcCCCCCCCcccccc
Q 003854 36 GQTCQICEDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~Fp-vCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
...|.||-+..- --++++ |+-- .|+.|..-- ..||-|++++.+
T Consensus 295 ~~~C~IC~~~~~----~~v~lp---CgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEV----SVVFIP---CGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBC----CEEEET---TCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCC----ceEEcC---CCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 358999988642 123444 5777 899998522 789999999864
No 129
>1m4f_A Hepcidin; strand-loop-strand, beta-sheet, hairpin loop, antimicrobial protein; NMR {Synthetic} SCOP: j.3.1.8 PDB: 2kef_A 3h0t_C
Probab=27.18 E-value=5 Score=28.59 Aligned_cols=23 Identities=35% Similarity=0.688 Sum_probs=14.2
Q ss_pred CCCcchhhHHHHHhhcCCCCCCCcc
Q 003854 62 AFPVCRPCYEYERREGNQACPQCKT 86 (791)
Q Consensus 62 ~FpvCr~CyeyerkeG~q~CPqCKt 86 (791)
.|||||.|+-=-++ ..+...|+|
T Consensus 3 ~~~iC~~CC~cc~~--~~CG~cC~~ 25 (26)
T 1m4f_A 3 HFPICIFCCGCCHR--SKCGMCCKT 25 (26)
T ss_dssp SSCCCEEEECSSSS--SSEEEECCC
T ss_pred cCCccceecccCCC--CCcCCeeCC
Confidence 59999999933333 344445554
No 130
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=27.12 E-value=51 Score=26.84 Aligned_cols=7 Identities=43% Similarity=0.662 Sum_probs=4.5
Q ss_pred ccccccc
Q 003854 38 TCQICED 44 (791)
Q Consensus 38 ~C~iCgd 44 (791)
.|..||.
T Consensus 13 ~Cp~C~~ 19 (58)
T 1dl6_A 13 TCPNHPD 19 (58)
T ss_dssp SBTTBSS
T ss_pred cCcCCCC
Confidence 5666665
No 131
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=27.10 E-value=31 Score=30.78 Aligned_cols=43 Identities=30% Similarity=0.793 Sum_probs=26.5
Q ss_pred ccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Yk 89 (791)
.|..|+..+. |..|+. .=+-|.|+.||. ++-+ ..|..|+++..
T Consensus 32 ~C~~C~~~L~----~~~f~~--~~g~~yC~~cy~--~~~~-~~C~~C~~~I~ 74 (126)
T 2xqn_T 32 CCFDCDSILA----GEIYVM--VNDKPVCKPCYV--KNHA-VVCQGCHNAID 74 (126)
T ss_dssp BCTTTCCBCT----TSEEEE--ETTEEEEHHHHH--HHSC-CBCTTTCSBCC
T ss_pred CcCCCCCCCC----cCEEEe--ECCEEechHHhC--cCcC-ccCcccCCcCC
Confidence 5666666543 233332 124578999994 2333 68999999763
No 132
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.10 E-value=56 Score=26.16 Aligned_cols=9 Identities=33% Similarity=0.877 Sum_probs=6.3
Q ss_pred CCcchhhHH
Q 003854 63 FPVCRPCYE 71 (791)
Q Consensus 63 FpvCr~Cye 71 (791)
-+.|+.||+
T Consensus 54 ~~yC~~cy~ 62 (72)
T 1x61_A 54 RAYCEGCYV 62 (72)
T ss_dssp CEEEHHHHH
T ss_pred eEECHHHHH
Confidence 467888874
No 133
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=26.97 E-value=22 Score=31.40 Aligned_cols=28 Identities=36% Similarity=0.880 Sum_probs=21.3
Q ss_pred cccccccccccccC----CCCceeecCCCCCCc
Q 003854 37 QTCQICEDEIEITD----NGEPFVACNECAFPV 65 (791)
Q Consensus 37 ~~C~iCgd~vg~~~----~Ge~fvaC~eC~Fpv 65 (791)
..|+ |||..-+++ +|+..|.|..|..-|
T Consensus 31 y~Cr-CGd~F~it~edL~~ge~iv~C~sCSL~I 62 (83)
T 1wge_A 31 YPCP-CGDNFAITKEDLENGEDVATCPSCSLII 62 (83)
T ss_dssp ECCS-SSSCEEEEHHHHHTTCCEEECTTTCCEE
T ss_pred EeCC-CCCEEEECHHHHhCCCEEEECCCCceEE
Confidence 4687 999866663 788888888887765
No 134
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=26.62 E-value=4.3 Score=34.55 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=24.7
Q ss_pred HHHhhcCCCCCCCccccccccCCCCcCCCCCc
Q 003854 72 YERREGNQACPQCKTRYKRLKGSPRVEGDEEE 103 (791)
Q Consensus 72 yerkeG~q~CPqCKt~Ykr~kGsprv~gd~ee 103 (791)
|.+.+|.-+|+.|+..|-...|-|..--||..
T Consensus 20 ~~~~~~~LiC~~cg~~YPI~dGIPvmL~~ear 51 (69)
T 2pk7_A 20 LSADKTELISKGAGLAYPIRDGIPVMLESEAR 51 (69)
T ss_dssp ECTTSSEEEETTTTEEEEEETTEECCCGGGCE
T ss_pred EeCCCCEEEcCCCCcEecCcCCeeeeChhhcc
Confidence 44456778999999999999898877766543
No 135
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=26.46 E-value=31 Score=26.64 Aligned_cols=45 Identities=27% Similarity=0.848 Sum_probs=32.0
Q ss_pred ccccccccccccCCCCceeecCCCCCCcchhhHH---HHHhhcCCCCCCCcc
Q 003854 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYE---YERREGNQACPQCKT 86 (791)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cye---yerkeG~q~CPqCKt 86 (791)
.|.+|++. .+++..+.|..|.-..=..|+. .+.-+|.-.||.|..
T Consensus 2 ~C~vC~~~----~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKK----GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCS----SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCC----CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 69999875 3466789999987555566763 233467888999964
No 136
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=25.37 E-value=17 Score=32.51 Aligned_cols=28 Identities=36% Similarity=0.883 Sum_probs=20.1
Q ss_pred cccccccccccccC----CCCceeecCCCCCCc
Q 003854 37 QTCQICEDEIEITD----NGEPFVACNECAFPV 65 (791)
Q Consensus 37 ~~C~iCgd~vg~~~----~Ge~fvaC~eC~Fpv 65 (791)
-.|+ |||..-+++ +|+..|.|..|..-|
T Consensus 24 ypCr-CGd~F~IteedLe~ge~iv~C~sCSL~I 55 (89)
T 2jr7_A 24 YPCP-CGDNFSITKEDLENGEDVATCPSCSLII 55 (89)
T ss_dssp EECT-TSSEEEEEHHHHHHTCCEEECTTTCCEE
T ss_pred EcCC-CCCEEEECHHHHhCCCEEEECCCCccEE
Confidence 3687 888866663 688778887777666
No 137
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=25.08 E-value=19 Score=31.70 Aligned_cols=28 Identities=29% Similarity=0.752 Sum_probs=20.4
Q ss_pred cccccccccccccC----CCCceeecCCCCCCc
Q 003854 37 QTCQICEDEIEITD----NGEPFVACNECAFPV 65 (791)
Q Consensus 37 ~~C~iCgd~vg~~~----~Ge~fvaC~eC~Fpv 65 (791)
..|. |||..-+++ +|+..|.|..|..-|
T Consensus 24 ypCr-CGd~F~it~edL~~ge~iv~C~sCSL~I 55 (83)
T 1yop_A 24 YPCP-CGDRFQIYLDDMFEGEKVAVCPSCSLMI 55 (83)
T ss_dssp EEET-TTEEEEEEHHHHHTTCCEEECSSSCCEE
T ss_pred EeCC-CCCeEEECHHHHhCCCEEEECCCCccEE
Confidence 3687 888866653 788888888777655
No 138
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=24.89 E-value=44 Score=33.33 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=22.8
Q ss_pred CCEEEEecCCCCCChHHHHHHhhccccc
Q 003854 562 APYLLNVDCDHYINNSKALREAMCFMMD 589 (791)
Q Consensus 562 gpfILnlDcD~yinnp~~Lr~amcfflD 589 (791)
.+++|++|||+=.-+++.+++.+-.+.+
T Consensus 100 ~d~Vlv~~~d~Pli~~~~i~~li~~~~~ 127 (231)
T 3q80_A 100 PEFVLVHDAARALTPPALVARVVEALRD 127 (231)
T ss_dssp CSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence 5799999999965679999988876654
No 139
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.65 E-value=50 Score=26.53 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=7.0
Q ss_pred Cccccccccccc
Q 003854 36 GQTCQICEDEIE 47 (791)
Q Consensus 36 ~~~C~iCgd~vg 47 (791)
...|..|+..|.
T Consensus 5 ~~~C~~C~~~I~ 16 (72)
T 1x4l_A 5 SSGCAGCTNPIS 16 (72)
T ss_dssp SCSBTTTTBCCC
T ss_pred CCCCcCCCcccc
Confidence 346666666654
No 140
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.49 E-value=54 Score=26.93 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=9.6
Q ss_pred CCccccccccccc
Q 003854 35 SGQTCQICEDEIE 47 (791)
Q Consensus 35 ~~~~C~iCgd~vg 47 (791)
.+.+|..|+..|.
T Consensus 14 ~~~~C~~C~~~I~ 26 (82)
T 1x63_A 14 DSPKCKGCFKAIV 26 (82)
T ss_dssp CSCBCSSSCCBCC
T ss_pred cCCcCccCCcccc
Confidence 3468888888776
No 141
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.48 E-value=24 Score=32.54 Aligned_cols=27 Identities=26% Similarity=0.763 Sum_probs=18.1
Q ss_pred eecCCCCCCcchhhHHHHHhhcCCCCCCCcccc
Q 003854 56 VACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (791)
Q Consensus 56 vaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Y 88 (791)
..|..|||-.+ ++-.....||.||..-
T Consensus 68 ~~C~~CG~~F~------~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 68 AQCRKCGFVFK------AEINIPSRCPKCKSEW 94 (105)
T ss_dssp CBBTTTCCBCC------CCSSCCSSCSSSCCCC
T ss_pred cChhhCcCeec------ccCCCCCCCcCCCCCc
Confidence 35888888861 2334447899998653
No 142
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.54 E-value=27 Score=28.19 Aligned_cols=15 Identities=27% Similarity=1.046 Sum_probs=13.0
Q ss_pred cCCCCCCCccccccc
Q 003854 77 GNQACPQCKTRYKRL 91 (791)
Q Consensus 77 G~q~CPqCKt~Ykr~ 91 (791)
|..+||+|+..|+..
T Consensus 11 ~~~~CPrCn~~f~~~ 25 (49)
T 2e72_A 11 GRKICPRCNAQFRVT 25 (49)
T ss_dssp SCCCCTTTCCCCSSH
T ss_pred CceeCCcccccccch
Confidence 678999999999765
No 143
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=21.52 E-value=51 Score=26.01 Aligned_cols=15 Identities=20% Similarity=0.550 Sum_probs=10.6
Q ss_pred ccCCccccccccccc
Q 003854 33 ELSGQTCQICEDEIE 47 (791)
Q Consensus 33 ~~~~~~C~iCgd~vg 47 (791)
.+.+..|..|+..|.
T Consensus 8 ~~~~~~C~~C~~~i~ 22 (72)
T 3f6q_B 8 GSASATCERCKGGFA 22 (72)
T ss_dssp CCTTCBCTTTCCBCC
T ss_pred CcCCccchhcCcccc
Confidence 345668888888766
No 144
>2ksl_A U1-agatoxin-TA1A; insecticidal toxin, spider toxin, neurotoxin, crustacean hyperglycemic hormone, MOLT-inhibiting hormone; NMR {Tegenaria agrestis}
Probab=20.86 E-value=3.6 Score=32.41 Aligned_cols=26 Identities=23% Similarity=0.717 Sum_probs=18.2
Q ss_pred CCcccccccccccccC----CCCceeecCC
Q 003854 35 SGQTCQICEDEIEITD----NGEPFVACNE 60 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~----~Ge~fvaC~e 60 (791)
.+.+|.-|||.|..-+ +.++..||||
T Consensus 19 ksnvcngcgdqvaaceaecfrndvytache 48 (51)
T 2ksl_A 19 KSNVCNGCGDQVAACEAECFRNDVYTACHE 48 (51)
T ss_dssp HHHHHHHHCSCHHHHHHTTSCSHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHhhhHHHHHHh
Confidence 3458999999986543 5566777765
No 145
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=20.81 E-value=8.1 Score=39.46 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=23.5
Q ss_pred ccccccccccccc---CCC-------Cc-eeecCCCCCCcchhhHHH
Q 003854 37 QTCQICEDEIEIT---DNG-------EP-FVACNECAFPVCRPCYEY 72 (791)
Q Consensus 37 ~~C~iCgd~vg~~---~~G-------e~-fvaC~eC~FpvCr~Cyey 72 (791)
.+|..||.+--.+ .+| +. .+-=+|=-.|+||-||.-
T Consensus 163 aiC~~CG~~A~~~~R~~~g~~~~~~g~~i~IGg~e~Y~~~CR~cy~~ 209 (219)
T 3e2i_A 163 AVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHHIV 209 (219)
T ss_dssp EECTTTCSEECEEEEEETTEECBTTCCSCCSSCCEEEEEECGGGCCC
T ss_pred eEccCCCCcceEEEEEECCcccccCCCEEEECCCccEEEcCHHhhcC
Confidence 4999999883222 243 32 334456778999999943
No 146
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.72 E-value=49 Score=26.88 Aligned_cols=12 Identities=25% Similarity=0.755 Sum_probs=8.3
Q ss_pred Cccccccccccc
Q 003854 36 GQTCQICEDEIE 47 (791)
Q Consensus 36 ~~~C~iCgd~vg 47 (791)
+..|..|+..|.
T Consensus 15 ~~~C~~C~~~I~ 26 (77)
T 2egq_A 15 AKKCAGCKNPIT 26 (77)
T ss_dssp CCCCSSSCCCCC
T ss_pred CccCcccCCccc
Confidence 457777777765
No 147
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=20.56 E-value=79 Score=28.04 Aligned_cols=51 Identities=24% Similarity=0.578 Sum_probs=35.1
Q ss_pred cccccCCcccccccccccccCCCCceeecCCCCCCcchhhHHH---HHhhcCCCCCCCccc
Q 003854 30 SVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKTR 87 (791)
Q Consensus 30 ~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cyey---erkeG~q~CPqCKt~ 87 (791)
.....+...|.+|++. | ..+-|..|.-.-=-.|..- ++-+|.=.||.|...
T Consensus 19 ~~~d~n~~~C~vC~~~------g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 19 GTLDDSATICRVCQKP------G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CSSSSSSSCCSSSCSS------S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cccCCCCCcCcCcCCC------C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4556678899999974 4 4677988855444455521 245788999999754
No 148
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=20.48 E-value=19 Score=28.95 Aligned_cols=49 Identities=20% Similarity=0.673 Sum_probs=35.2
Q ss_pred CCcccccccccccccCCCCceeecCCCCCCcchhhHH--H-HHhhcCCCCCCCcccccc
Q 003854 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYE--Y-ERREGNQACPQCKTRYKR 90 (791)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~Cye--y-erkeG~q~CPqCKt~Ykr 90 (791)
+...|.+|++. | ..+.|..|.-..=..|.. . +.-+|.-.||.|......
T Consensus 4 ~~~~C~vC~~~------g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 4 HEDFCSVCRKS------G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCSSCTTTCCC------S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCcCCCCC------C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 55689999973 3 578899997665567776 2 234678899999776543
No 149
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=20.35 E-value=30 Score=35.57 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=23.8
Q ss_pred ccccccccccc----ccCCCCc-eeecCCCCCCcchhhHH
Q 003854 37 QTCQICEDEIE----ITDNGEP-FVACNECAFPVCRPCYE 71 (791)
Q Consensus 37 ~~C~iCgd~vg----~~~~Ge~-fvaC~eC~FpvCr~Cye 71 (791)
.+|..||.+-- +..+|+. .+-=+|=-.|+||-||.
T Consensus 151 aIC~~Cg~~A~~t~R~~~~~~~i~IGg~e~Y~~~CR~c~~ 190 (234)
T 2orv_A 151 AVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYF 190 (234)
T ss_dssp EECTTTCSEECEEEESSCCCSSCCCCCTTTEEEECHHHHH
T ss_pred eEecCcCCcceEEEEEcCCCCEEEECCCCcEEEccHHhhh
Confidence 48999998722 2234553 34446777899999994
No 150
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=20.33 E-value=59 Score=27.33 Aligned_cols=42 Identities=29% Similarity=0.794 Sum_probs=29.5
Q ss_pred cccccccccccccCCCCceeecCCCCCC-cchhhHHHHHhhcCCCCCCCcccccc
Q 003854 37 QTCQICEDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (791)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~Fp-vCr~CyeyerkeG~q~CPqCKt~Ykr 90 (791)
..|.||-+... --+|++| +-- .|..|..- -+.||-|+++...
T Consensus 19 ~~C~IC~~~~~----~~v~~pC---gH~~~C~~C~~~-----~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEI----NSTFCPC---GHTVCCESCAAQ-----LQSCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBC----CEEEETT---CBCCBCHHHHTT-----CSBCTTTCCBCCE
T ss_pred CEeEEeCcccC----cEEEECC---CCHHHHHHHHHh-----cCcCCCCCchhhC
Confidence 48999977532 1246665 555 79999852 2599999998854
Done!