Query 003855
Match_columns 791
No_of_seqs 760 out of 5478
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 06:15:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.3E-55 4.5E-60 523.5 33.4 427 4-436 238-754 (768)
2 3omv_A RAF proto-oncogene seri 100.0 1.7E-54 5.8E-59 448.7 19.9 264 501-785 36-304 (307)
3 4asz_A BDNF/NT-3 growth factor 100.0 2.8E-55 9.4E-60 455.0 13.8 261 501-784 13-292 (299)
4 4aoj_A High affinity nerve gro 100.0 1.9E-54 6.5E-59 455.1 18.6 259 501-782 41-320 (329)
5 4gt4_A Tyrosine-protein kinase 100.0 1.7E-54 5.9E-59 451.0 13.1 256 501-779 26-304 (308)
6 3rgz_A Protein brassinosteroid 100.0 1.2E-51 4.2E-56 489.4 31.5 407 1-419 212-717 (768)
7 4ase_A Vascular endothelial gr 100.0 6.2E-52 2.1E-56 439.4 16.8 263 499-783 62-349 (353)
8 4fih_A Serine/threonine-protei 100.0 6E-52 2E-56 434.7 16.4 249 501-774 74-323 (346)
9 3hmm_A TGF-beta receptor type- 100.0 2.7E-51 9.2E-56 428.5 21.2 270 501-782 3-298 (303)
10 4g3f_A NF-kappa-beta-inducing 100.0 2.7E-51 9.1E-56 428.6 18.0 257 500-783 57-318 (336)
11 4aw0_A HPDK1, 3-phosphoinositi 100.0 1E-51 3.5E-56 426.3 13.8 248 501-773 32-283 (311)
12 4b9d_A Serine/threonine-protei 100.0 5.2E-51 1.8E-55 428.3 19.3 250 500-774 23-276 (350)
13 3fpq_A Serine/threonine-protei 100.0 2.4E-50 8.3E-55 414.5 20.8 244 504-774 29-282 (290)
14 4fie_A Serine/threonine-protei 100.0 3.3E-50 1.1E-54 432.0 20.1 249 501-774 151-400 (423)
15 3hyh_A Carbon catabolite-derep 100.0 4.4E-50 1.5E-54 408.7 17.4 245 501-774 13-262 (275)
16 3t6q_A CD180 antigen; protein- 100.0 6.8E-48 2.3E-52 447.1 30.0 415 5-423 49-564 (606)
17 3ubd_A Ribosomal protein S6 ki 100.0 3.2E-50 1.1E-54 415.5 8.1 247 501-774 24-281 (304)
18 4g31_A Eukaryotic translation 100.0 1.8E-48 6.1E-53 404.8 17.8 249 501-774 5-279 (299)
19 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-47 5.6E-52 443.9 27.9 408 4-423 25-562 (606)
20 3j0a_A TOLL-like receptor 5; m 100.0 3.2E-47 1.1E-51 456.2 30.5 415 4-423 39-564 (844)
21 4eco_A Uncharacterized protein 100.0 1.9E-47 6.5E-52 443.0 24.7 381 1-399 93-603 (636)
22 3t6q_A CD180 antigen; protein- 100.0 1.7E-46 5.8E-51 435.4 32.3 403 4-418 26-512 (606)
23 1ziw_A TOLL-like receptor 3; i 100.0 4.7E-46 1.6E-50 437.6 32.9 415 7-423 43-626 (680)
24 4eco_A Uncharacterized protein 100.0 3.1E-46 1.1E-50 432.8 23.3 395 13-421 81-602 (636)
25 3vq2_A TLR4, TOLL-like recepto 100.0 6E-46 2E-50 430.8 25.1 401 3-408 46-570 (606)
26 1ziw_A TOLL-like receptor 3; i 100.0 4.8E-45 1.6E-49 429.0 31.8 404 4-418 18-516 (680)
27 2z63_A TOLL-like receptor 4, v 100.0 1.6E-45 5.3E-50 424.3 25.5 404 5-423 22-535 (570)
28 4b99_A Mitogen-activated prote 100.0 6.8E-46 2.3E-50 400.2 20.4 267 501-774 54-344 (398)
29 4ecn_A Leucine-rich repeat pro 100.0 3.5E-45 1.2E-49 430.3 25.6 353 53-419 440-840 (876)
30 4f9c_A Cell division cycle 7-r 100.0 1.6E-45 5.4E-50 393.3 19.9 266 499-774 19-352 (361)
31 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-44 3.7E-49 434.2 29.3 408 4-422 18-542 (844)
32 4ecn_A Leucine-rich repeat pro 100.0 3.6E-44 1.2E-48 421.7 27.4 354 29-399 440-843 (876)
33 3v5w_A G-protein coupled recep 100.0 2.3E-44 7.8E-49 403.3 23.3 248 500-774 188-449 (689)
34 2z63_A TOLL-like receptor 4, v 100.0 3.1E-44 1.1E-48 413.5 23.5 408 5-423 44-560 (570)
35 3uto_A Twitchin; kinase, muscl 100.0 2.1E-44 7.1E-49 408.2 21.7 252 500-774 156-410 (573)
36 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-44 5.8E-49 410.4 20.7 395 4-423 14-485 (520)
37 2z81_A CD282 antigen, TOLL-lik 100.0 5.3E-44 1.8E-48 409.4 22.0 397 4-423 19-514 (549)
38 2qkw_B Protein kinase; three-h 100.0 2.2E-44 7.5E-49 382.7 17.2 282 491-781 29-315 (321)
39 3v47_A TOLL-like receptor 5B a 100.0 2.9E-43 9.9E-48 393.4 25.9 360 13-402 30-414 (455)
40 3s95_A LIMK-1, LIM domain kina 100.0 3.9E-43 1.3E-47 371.1 22.4 265 500-785 9-286 (310)
41 2psq_A Fibroblast growth facto 100.0 3.8E-43 1.3E-47 379.7 20.0 263 500-785 80-368 (370)
42 2z81_A CD282 antigen, TOLL-lik 100.0 5.5E-43 1.9E-47 401.0 22.4 379 2-401 39-515 (549)
43 3soc_A Activin receptor type-2 100.0 2E-43 6.7E-48 375.2 17.2 267 500-782 23-319 (322)
44 3uim_A Brassinosteroid insensi 100.0 2.7E-43 9.2E-48 375.3 17.9 286 486-778 15-308 (326)
45 4g8a_A TOLL-like receptor 4; l 100.0 7.1E-42 2.4E-46 399.1 30.5 409 4-423 45-584 (635)
46 3cbl_A C-FES, proto-oncogene t 100.0 8.7E-44 3E-48 386.2 12.5 260 500-782 113-375 (377)
47 2z7x_B TOLL-like receptor 1, v 100.0 5.3E-43 1.8E-47 398.1 18.3 387 2-401 34-486 (520)
48 3ugc_A Tyrosine-protein kinase 100.0 2.2E-43 7.4E-48 370.3 13.8 275 500-784 9-294 (295)
49 3kul_A Ephrin type-A receptor 100.0 7.2E-43 2.5E-47 371.0 17.2 264 500-786 48-318 (325)
50 3fxz_A Serine/threonine-protei 100.0 3.5E-42 1.2E-46 360.9 22.0 250 500-774 19-269 (297)
51 3p86_A Serine/threonine-protei 100.0 1.2E-42 4.1E-47 366.4 17.6 262 500-786 36-303 (309)
52 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-41 5.5E-46 389.2 27.5 396 5-423 46-514 (562)
53 2nru_A Interleukin-1 receptor- 100.0 2.4E-41 8.2E-46 357.0 25.4 281 488-781 12-306 (307)
54 3lb7_A RAF proto-oncogene seri 100.0 4.3E-42 1.5E-46 361.9 18.9 264 500-785 35-304 (307)
55 3v47_A TOLL-like receptor 5B a 100.0 1E-41 3.5E-46 380.9 22.6 373 15-423 12-412 (455)
56 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-41 3.9E-46 390.4 23.1 388 2-402 65-516 (562)
57 2qol_A Ephrin receptor; recept 100.0 2E-42 6.7E-47 374.3 15.8 261 500-783 44-311 (373)
58 3q4u_A Activin receptor type-1 100.0 2.8E-41 9.4E-46 355.5 22.9 266 500-779 7-300 (301)
59 3fe3_A MAP/microtubule affinit 100.0 5.2E-42 1.8E-46 363.9 17.3 247 500-774 14-264 (328)
60 4hcu_A Tyrosine-protein kinase 100.0 9.4E-42 3.2E-46 352.8 18.6 258 500-782 9-267 (269)
61 3vhe_A Vascular endothelial gr 100.0 2.8E-42 9.5E-47 372.8 14.6 267 494-782 15-356 (359)
62 3zgw_A Maternal embryonic leuc 100.0 3.6E-42 1.2E-46 367.0 15.1 250 499-774 8-260 (347)
63 2c30_A Serine/threonine-protei 100.0 1.7E-41 5.8E-46 359.8 20.2 260 490-774 24-294 (321)
64 2id5_A Lingo-1, leucine rich r 100.0 4.9E-41 1.7E-45 377.5 24.7 347 40-423 14-360 (477)
65 3tt0_A Basic fibroblast growth 100.0 3.9E-41 1.3E-45 366.2 23.1 264 500-786 68-357 (382)
66 3sxs_A Cytoplasmic tyrosine-pr 100.0 3.8E-42 1.3E-46 355.6 14.2 257 500-781 7-264 (268)
67 1tki_A Titin; serine kinase, m 100.0 3.7E-41 1.3E-45 356.8 21.3 251 500-774 4-257 (321)
68 3tki_A Serine/threonine-protei 100.0 8.4E-42 2.9E-46 362.3 16.3 253 500-774 6-261 (323)
69 3poz_A Epidermal growth factor 100.0 4E-42 1.4E-46 365.9 13.9 258 500-781 14-278 (327)
70 3mdy_A Bone morphogenetic prot 100.0 1.8E-40 6.3E-45 355.2 26.3 278 491-782 27-332 (337)
71 3l9p_A Anaplastic lymphoma kin 100.0 3.5E-42 1.2E-46 371.9 12.8 261 500-783 70-347 (367)
72 3niz_A Rhodanese family protei 100.0 8.3E-41 2.8E-45 353.0 22.6 268 499-774 19-300 (311)
73 1t46_A HOMO sapiens V-KIT hard 100.0 1.8E-41 6.2E-46 359.1 17.4 264 500-785 22-311 (313)
74 1luf_A Muscle-specific tyrosin 100.0 6.1E-42 2.1E-46 367.7 13.7 264 499-785 45-339 (343)
75 1o6l_A RAC-beta serine/threoni 100.0 4.3E-41 1.5E-45 357.7 20.0 248 500-774 4-260 (337)
76 3op5_A Serine/threonine-protei 100.0 2.3E-41 8E-46 365.7 18.2 272 499-784 33-332 (364)
77 4aw2_A Serine/threonine-protei 100.0 6.7E-42 2.3E-46 375.4 13.6 259 495-774 68-338 (437)
78 3og7_A AKAP9-BRAF fusion prote 100.0 2.1E-41 7.1E-46 354.0 16.7 259 500-780 23-287 (289)
79 2ivs_A Proto-oncogene tyrosine 100.0 1.7E-41 5.7E-46 359.5 16.1 260 500-782 22-312 (314)
80 3gen_A Tyrosine-protein kinase 100.0 1.6E-41 5.4E-46 353.9 15.6 258 500-782 23-281 (283)
81 2yab_A Death-associated protei 100.0 8.2E-41 2.8E-45 358.9 21.4 252 499-774 10-272 (361)
82 1csn_A Casein kinase-1; phosph 100.0 1.6E-40 5.5E-45 349.1 22.4 266 500-784 9-286 (298)
83 4eqm_A Protein kinase; transfe 100.0 3.7E-41 1.3E-45 352.7 17.5 260 500-780 10-274 (294)
84 1rjb_A FL cytokine receptor; k 100.0 6.2E-41 2.1E-45 359.9 19.6 265 499-785 43-338 (344)
85 1k9a_A Carboxyl-terminal SRC k 100.0 3.1E-41 1.1E-45 374.5 17.7 252 500-782 192-446 (450)
86 3soa_A Calcium/calmodulin-depe 100.0 1.9E-40 6.4E-45 365.4 23.6 254 498-774 8-267 (444)
87 3qup_A Tyrosine-protein kinase 100.0 1.5E-41 5.2E-46 361.3 14.2 262 499-783 21-300 (323)
88 1kob_A Twitchin; kinase, intra 100.0 1.2E-40 4E-45 360.9 21.2 252 500-774 50-304 (387)
89 2bdw_A Hypothetical protein K1 100.0 1.5E-40 5.1E-45 358.0 21.7 253 499-775 27-285 (362)
90 2izr_A Casein kinase I isoform 100.0 8.2E-41 2.8E-45 356.5 19.4 264 500-783 8-283 (330)
91 4f0f_A Serine/threonine-protei 100.0 1.2E-40 4.1E-45 348.0 20.1 253 500-779 18-287 (287)
92 2pvf_A Fibroblast growth facto 100.0 2.2E-40 7.5E-45 353.8 22.5 263 500-785 34-322 (334)
93 2y0a_A Death-associated protei 100.0 2E-40 6.9E-45 352.3 22.1 252 499-774 9-271 (326)
94 2eva_A TAK1 kinase - TAB1 chim 100.0 2.3E-40 7.9E-45 349.0 22.2 259 501-787 8-269 (307)
95 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-40 9E-45 385.9 25.0 392 6-402 69-586 (635)
96 1qcf_A Haematopoetic cell kina 100.0 8.9E-42 3E-46 379.6 11.5 259 499-783 186-446 (454)
97 2i1m_A Macrophage colony-stimu 100.0 8.7E-41 3E-45 357.1 18.7 267 497-785 42-330 (333)
98 1mp8_A Focal adhesion kinase 1 100.0 3.9E-41 1.3E-45 350.5 15.4 258 500-782 14-277 (281)
99 2w1i_A JAK2; chromosomal rearr 100.0 4.2E-41 1.4E-45 358.1 15.6 274 500-783 40-324 (326)
100 3c0i_A Peripheral plasma membr 100.0 3.4E-40 1.2E-44 354.3 22.5 252 500-774 23-286 (351)
101 3t9t_A Tyrosine-protein kinase 100.0 1.2E-40 4.1E-45 344.1 18.3 258 500-782 7-265 (267)
102 1b6c_B TGF-B superfamily recep 100.0 7.3E-40 2.5E-44 351.4 25.0 280 490-783 31-338 (342)
103 3g2f_A Bone morphogenetic prot 100.0 4E-41 1.4E-45 360.2 15.1 281 500-788 12-325 (336)
104 4fr4_A YANK1, serine/threonine 100.0 6E-40 2.1E-44 353.9 24.0 250 500-774 14-271 (384)
105 3kex_A Receptor tyrosine-prote 100.0 6.2E-41 2.1E-45 356.5 16.0 258 501-782 13-277 (325)
106 4e5w_A Tyrosine-protein kinase 100.0 4.6E-41 1.6E-45 353.9 14.7 269 501-780 21-301 (302)
107 3txo_A PKC-L, NPKC-ETA, protei 100.0 3.7E-41 1.3E-45 360.6 14.2 249 499-774 21-280 (353)
108 3lxl_A Tyrosine-protein kinase 100.0 4.9E-41 1.7E-45 357.8 14.9 275 501-787 23-309 (327)
109 1fot_A TPK1 delta, CAMP-depend 100.0 2E-40 7E-45 350.0 19.4 245 500-774 5-258 (318)
110 3dbq_A Dual specificity protei 100.0 1.3E-40 4.5E-45 356.7 18.2 252 500-775 8-274 (343)
111 3lxp_A Non-receptor tyrosine-p 100.0 1.1E-40 3.9E-45 353.4 17.4 274 503-787 33-316 (318)
112 3c1x_A Hepatocyte growth facto 100.0 3.8E-41 1.3E-45 363.7 13.8 263 501-786 89-360 (373)
113 3o0g_A Cell division protein k 100.0 1.5E-40 5E-45 348.2 17.9 267 501-774 2-282 (292)
114 1opk_A P150, C-ABL, proto-onco 100.0 3.7E-41 1.2E-45 378.1 14.2 256 500-780 219-477 (495)
115 4dc2_A Protein kinase C IOTA t 100.0 1.1E-40 3.9E-45 360.8 17.5 252 500-769 51-307 (396)
116 3brb_A Proto-oncogene tyrosine 100.0 1.4E-40 4.7E-45 352.2 17.6 265 498-785 31-312 (313)
117 2xir_A Vascular endothelial gr 100.0 7.7E-41 2.6E-45 354.7 15.5 267 495-783 21-312 (316)
118 3dtc_A Mitogen-activated prote 100.0 5.2E-41 1.8E-45 347.7 13.8 251 500-779 6-271 (271)
119 3lzb_A Epidermal growth factor 100.0 3.6E-41 1.2E-45 358.3 12.9 258 500-781 14-278 (327)
120 3p1a_A MYT1 kinase, membrane-a 100.0 2.9E-40 1E-44 348.9 19.7 245 500-774 56-304 (311)
121 2x4f_A Myosin light chain kina 100.0 3.1E-40 1.1E-44 356.8 20.2 247 505-774 93-342 (373)
122 4euu_A Serine/threonine-protei 100.0 4.7E-40 1.6E-44 349.0 21.0 272 500-778 8-306 (319)
123 3h4j_B AMPK kdaid, SNF1-like p 100.0 5.5E-41 1.9E-45 356.5 13.7 246 500-774 8-258 (336)
124 1xjd_A Protein kinase C, theta 100.0 6.7E-41 2.3E-45 357.2 14.2 250 497-773 13-268 (345)
125 3v8s_A RHO-associated protein 100.0 7.6E-41 2.6E-45 364.3 14.9 257 495-774 63-329 (410)
126 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 2.7E-41 9.3E-46 375.2 11.5 259 500-784 183-443 (452)
127 2vd5_A DMPK protein; serine/th 100.0 1.1E-40 3.7E-45 363.3 16.0 258 495-774 55-327 (412)
128 2zmd_A Dual specificity protei 100.0 3.6E-40 1.2E-44 358.8 20.0 250 501-774 56-320 (390)
129 3kmu_A ILK, integrin-linked ki 100.0 7.7E-41 2.6E-45 346.3 13.9 252 500-781 9-270 (271)
130 2zv2_A Calcium/calmodulin-depe 100.0 8.7E-41 3E-45 351.0 14.5 249 500-774 12-292 (298)
131 1u59_A Tyrosine-protein kinase 100.0 8E-40 2.7E-44 341.7 21.7 263 501-787 9-278 (287)
132 3gni_B Strad alpha; kinase fol 100.0 3.8E-40 1.3E-44 359.7 20.1 271 500-775 24-334 (389)
133 3pls_A Macrophage-stimulating 100.0 2.7E-40 9.2E-45 347.4 17.9 263 502-786 22-292 (298)
134 3f66_A Hepatocyte growth facto 100.0 2.2E-40 7.5E-45 348.0 17.2 263 501-786 25-296 (298)
135 1o6v_A Internalin A; bacterial 100.0 3.7E-39 1.3E-43 360.5 28.2 348 11-399 44-391 (466)
136 4fvq_A Tyrosine-protein kinase 100.0 5.7E-41 2E-45 350.9 12.6 253 500-782 7-276 (289)
137 3a8x_A Protein kinase C IOTA t 100.0 3.3E-40 1.1E-44 352.6 18.7 249 500-769 8-264 (345)
138 1mqb_A Ephrin type-A receptor 100.0 2.6E-40 9.1E-45 352.7 17.7 261 501-784 44-312 (333)
139 1ob3_A PFPK5, cell division co 100.0 9.4E-41 3.2E-45 348.8 13.7 266 501-774 2-280 (288)
140 1rdq_E PKA C-alpha, CAMP-depen 100.0 2.7E-40 9.1E-45 353.9 17.5 245 500-774 40-293 (350)
141 2wqm_A Serine/threonine-protei 100.0 1E-39 3.5E-44 345.0 21.6 267 500-788 31-304 (310)
142 2buj_A Serine/threonine-protei 100.0 3.5E-40 1.2E-44 349.8 18.1 266 500-786 28-311 (317)
143 3cc6_A Protein tyrosine kinase 100.0 2.2E-40 7.6E-45 344.8 16.1 259 500-783 11-275 (281)
144 3qd2_B Eukaryotic translation 100.0 4.9E-40 1.7E-44 351.1 18.9 251 499-774 4-325 (332)
145 2w4o_A Calcium/calmodulin-depe 100.0 4.3E-40 1.5E-44 353.0 18.3 251 499-774 51-305 (349)
146 2yex_A Serine/threonine-protei 100.0 7E-40 2.4E-44 340.1 19.4 254 499-774 5-261 (276)
147 3oz6_A Mitogen-activated prote 100.0 7.4E-40 2.5E-44 357.2 19.9 270 498-775 6-329 (388)
148 1p4o_A Insulin-like growth fac 100.0 6.3E-41 2.2E-45 356.4 10.9 265 495-782 19-300 (322)
149 3kfa_A Tyrosine-protein kinase 100.0 2.5E-40 8.7E-45 345.8 15.2 260 499-783 11-273 (288)
150 3uc3_A Serine/threonine-protei 100.0 3E-40 1E-44 355.8 16.0 253 500-775 19-275 (361)
151 3uzp_A CKI-delta, CKID, casein 100.0 1.8E-39 6E-44 340.8 21.4 265 500-785 8-284 (296)
152 3f3z_A Calcium/calmodulin-depe 100.0 1.7E-39 5.8E-44 337.4 20.9 251 499-774 7-261 (277)
153 4hgt_A Casein kinase I isoform 100.0 1.4E-39 4.7E-44 341.6 20.4 265 499-784 7-283 (296)
154 2pmi_A Negative RE, cyclin-dep 100.0 7.6E-40 2.6E-44 346.7 18.6 267 500-774 4-293 (317)
155 3fdn_A Serine/threonine-protei 100.0 6.6E-40 2.2E-44 340.9 17.7 248 499-775 7-258 (279)
156 1jl5_A Outer protein YOPM; leu 100.0 2.4E-39 8.3E-44 358.6 23.1 334 3-397 24-371 (454)
157 3kk8_A Calcium/calmodulin depe 100.0 2.4E-39 8.3E-44 337.6 21.8 251 500-774 5-261 (284)
158 2ozo_A Tyrosine-protein kinase 100.0 2.4E-40 8.1E-45 380.2 15.4 260 502-785 336-602 (613)
159 3gxj_A TGF-beta receptor type- 100.0 1.3E-41 4.6E-46 358.3 4.7 269 500-782 2-298 (303)
160 2v62_A Serine/threonine-protei 100.0 1.8E-40 6.2E-45 355.9 13.5 266 500-780 36-327 (345)
161 2i0e_A Protein kinase C-beta I 100.0 4.2E-40 1.5E-44 352.2 16.3 249 499-774 18-276 (353)
162 1qpc_A LCK kinase; alpha beta 100.0 1.1E-39 3.6E-44 339.3 18.8 262 500-787 12-275 (279)
163 3e7e_A HBUB1, BUB1A, mitotic c 100.0 6E-40 2.1E-44 354.9 17.4 257 498-785 62-343 (365)
164 1u5q_A Serine/threonine protei 100.0 1E-39 3.5E-44 349.5 19.0 246 501-775 54-306 (348)
165 1xbb_A Tyrosine-protein kinase 100.0 1.4E-39 4.8E-44 340.5 19.6 264 500-788 15-286 (291)
166 3hko_A Calcium/calmodulin-depe 100.0 6.8E-40 2.3E-44 352.0 17.6 260 495-774 20-330 (345)
167 3a62_A Ribosomal protein S6 ki 100.0 5.7E-40 2E-44 349.0 16.6 248 500-774 16-276 (327)
168 2a2a_A Death-associated protei 100.0 2.6E-39 8.8E-44 343.5 21.6 252 499-774 10-272 (321)
169 3cok_A Serine/threonine-protei 100.0 6.6E-40 2.3E-44 340.7 16.2 249 500-774 10-262 (278)
170 2y94_A 5'-AMP-activated protei 100.0 9.6E-40 3.3E-44 361.9 18.4 247 500-774 15-266 (476)
171 2yfx_A Tyrosine-protein kinase 100.0 1.5E-39 5E-44 346.4 18.9 261 500-783 29-306 (327)
172 3kn6_A Ribosomal protein S6 ki 100.0 1.3E-39 4.6E-44 345.7 18.4 248 506-774 16-270 (325)
173 3llt_A Serine/threonine kinase 100.0 1.3E-39 4.6E-44 351.8 18.7 270 492-774 26-355 (360)
174 2jii_A Serine/threonine-protei 100.0 4E-40 1.4E-44 354.5 14.4 267 500-785 41-340 (352)
175 2ac3_A MAP kinase-interacting 100.0 1.7E-39 5.8E-44 344.3 18.9 266 501-774 12-295 (316)
176 2eue_A Carbon catabolite derep 100.0 7.4E-40 2.5E-44 339.7 15.6 245 501-774 13-262 (275)
177 2id5_A Lingo-1, leucine rich r 100.0 9.3E-39 3.2E-43 358.9 25.8 349 15-401 13-361 (477)
178 3mtl_A Cell division protein k 100.0 4.9E-40 1.7E-44 349.3 14.6 266 501-774 2-281 (324)
179 3ork_A Serine/threonine protei 100.0 5.3E-40 1.8E-44 347.1 14.7 262 500-782 11-282 (311)
180 3dls_A PAS domain-containing s 100.0 4.9E-40 1.7E-44 350.5 14.2 243 499-775 22-275 (335)
181 2acx_A G protein-coupled recep 100.0 1.2E-39 4E-44 365.6 17.9 250 500-774 183-444 (576)
182 3rp9_A Mitogen-activated prote 100.0 3.7E-39 1.3E-43 359.6 21.1 195 500-700 52-280 (458)
183 4eut_A Serine/threonine-protei 100.0 6.7E-40 2.3E-44 358.1 14.7 276 500-782 8-310 (396)
184 3bhy_A Death-associated protei 100.0 6.9E-39 2.4E-43 334.0 21.4 261 500-784 4-277 (283)
185 2h8h_A Proto-oncogene tyrosine 100.0 1.2E-40 4.2E-45 377.2 8.8 258 499-782 265-524 (535)
186 4agu_A Cyclin-dependent kinase 100.0 2.7E-39 9.1E-44 342.0 18.5 266 500-774 2-284 (311)
187 3g33_A Cell division protein k 100.0 2.1E-39 7.1E-44 342.2 17.6 267 499-774 7-296 (308)
188 3ll6_A Cyclin G-associated kin 100.0 2.5E-39 8.4E-44 346.5 18.4 258 500-784 27-311 (337)
189 4ejn_A RAC-alpha serine/threon 100.0 4.9E-40 1.7E-44 365.1 13.3 249 499-774 146-404 (446)
190 2a19_B Interferon-induced, dou 100.0 7.9E-40 2.7E-44 341.2 14.0 255 498-787 8-280 (284)
191 3is5_A Calcium-dependent prote 100.0 3.4E-39 1.1E-43 336.4 18.7 250 500-774 21-278 (285)
192 2r5t_A Serine/threonine-protei 100.0 5.7E-40 1.9E-44 353.7 13.2 250 500-776 37-291 (373)
193 3bz5_A Internalin-J, INLJ; leu 100.0 8.6E-39 3E-43 354.5 23.1 347 2-401 31-392 (457)
194 2h34_A Serine/threonine-protei 100.0 1.4E-39 4.7E-44 343.5 15.8 261 500-783 33-298 (309)
195 1nxk_A MAP kinase-activated pr 100.0 5.8E-39 2E-43 350.3 21.2 250 500-775 60-322 (400)
196 4fl3_A Tyrosine-protein kinase 100.0 8.1E-40 2.8E-44 376.5 15.1 253 507-784 375-634 (635)
197 1u46_A ACK-1, activated CDC42 100.0 5.9E-40 2E-44 343.6 12.7 260 500-782 17-285 (291)
198 1byg_A CSK, protein (C-termina 100.0 5.6E-40 1.9E-44 341.2 12.1 253 500-783 20-275 (278)
199 3ttj_A Mitogen-activated prote 100.0 4.2E-39 1.4E-43 357.8 19.8 261 500-774 61-355 (464)
200 1fvr_A Tyrosine-protein kinase 100.0 1.2E-39 4E-44 347.2 14.6 257 501-783 25-302 (327)
201 1cm8_A Phosphorylated MAP kina 100.0 8.3E-39 2.8E-43 345.3 21.4 262 500-774 24-307 (367)
202 2jam_A Calcium/calmodulin-depe 100.0 6.6E-39 2.3E-43 337.7 20.0 251 499-774 7-261 (304)
203 3i6u_A CDS1, serine/threonine- 100.0 3.7E-39 1.3E-43 354.3 18.6 253 498-774 132-399 (419)
204 1t4h_A Serine/threonine-protei 100.0 1.2E-38 4E-43 333.4 21.3 247 501-774 26-282 (290)
205 2y7j_A Phosphorylase B kinase 100.0 1.7E-38 5.8E-43 342.8 23.1 257 494-774 87-359 (365)
206 3byv_A Rhoptry kinase; malaria 100.0 3.2E-40 1.1E-44 358.4 9.6 248 500-782 72-369 (377)
207 3n9x_A Phosphotransferase; mal 100.0 9.9E-39 3.4E-43 352.6 21.6 200 500-705 25-253 (432)
208 2qr7_A Ribosomal protein S6 ki 100.0 2.3E-39 7.8E-44 345.7 15.8 251 499-774 20-277 (342)
209 2rku_A Serine/threonine-protei 100.0 3.4E-39 1.2E-43 338.2 16.6 249 500-775 14-266 (294)
210 2vgo_A Serine/threonine-protei 100.0 5.2E-39 1.8E-43 335.0 17.9 246 500-774 13-262 (284)
211 3c4z_A Rhodopsin kinase; Ser/T 100.0 8E-39 2.7E-43 358.3 20.3 248 500-769 184-438 (543)
212 3sv0_A Casein kinase I-like; t 100.0 1E-38 3.5E-43 354.4 21.0 262 500-782 6-279 (483)
213 3eqc_A Dual specificity mitoge 100.0 1.4E-39 4.7E-44 351.6 13.2 264 500-774 32-324 (360)
214 2j7t_A Serine/threonine-protei 100.0 1.3E-39 4.5E-44 342.8 12.6 252 500-774 18-275 (302)
215 2owb_A Serine/threonine-protei 100.0 3.7E-39 1.3E-43 344.3 16.2 248 500-774 40-291 (335)
216 3fme_A Dual specificity mitoge 100.0 6.6E-39 2.2E-43 335.4 17.6 250 500-774 6-266 (290)
217 3mwu_A Calmodulin-domain prote 100.0 1.8E-38 6.3E-43 356.5 22.3 250 499-774 20-276 (486)
218 4aaa_A Cyclin-dependent kinase 100.0 3.3E-39 1.1E-43 344.2 15.2 267 500-774 24-306 (331)
219 3a7i_A MST3 kinase, serine/thr 100.0 1.9E-38 6.5E-43 334.1 20.6 249 500-775 21-271 (303)
220 3nsz_A CK II alpha, casein kin 100.0 8.9E-39 3E-43 341.0 18.3 261 500-774 35-319 (330)
221 3gbz_A Kinase, CMGC CDK; ssgci 100.0 2.7E-39 9.2E-44 344.4 13.9 269 497-774 30-318 (329)
222 2clq_A Mitogen-activated prote 100.0 1.6E-38 5.5E-43 333.4 19.2 250 502-774 23-278 (295)
223 2h6d_A 5'-AMP-activated protei 100.0 8.6E-39 2.9E-43 331.9 16.9 247 500-774 10-261 (276)
224 1ua2_A CAK, cell division prot 100.0 4.1E-39 1.4E-43 345.5 15.0 270 497-774 6-291 (346)
225 1o6v_A Internalin A; bacterial 100.0 8.7E-38 3E-42 349.4 26.2 349 34-422 43-391 (466)
226 3mi9_A Cell division protein k 100.0 1.9E-38 6.5E-43 341.4 20.1 268 500-774 16-311 (351)
227 2pml_X PFPK7, Ser/Thr protein 100.0 3.3E-39 1.1E-43 347.1 14.0 263 500-774 30-322 (348)
228 3com_A Serine/threonine-protei 100.0 1.1E-38 3.6E-43 337.9 17.5 251 499-774 27-278 (314)
229 3lij_A Calcium/calmodulin depe 100.0 2E-38 6.7E-43 356.8 20.6 250 500-774 36-291 (494)
230 2w5a_A Serine/threonine-protei 100.0 1.1E-38 3.6E-43 331.8 17.0 256 500-776 5-269 (279)
231 3qyz_A Mitogen-activated prote 100.0 2.8E-38 9.5E-43 341.6 20.7 267 500-774 26-313 (364)
232 3pg1_A Mitogen-activated prote 100.0 2.5E-38 8.6E-43 342.1 20.3 273 493-774 14-316 (362)
233 3lm5_A Serine/threonine-protei 100.0 1.2E-38 4.2E-43 339.0 17.5 261 491-774 18-287 (327)
234 3cek_A Dual specificity protei 100.0 1.8E-38 6.3E-43 335.8 18.6 255 497-775 24-293 (313)
235 3q60_A ROP5B; pseudokinase, tr 100.0 1.9E-39 6.6E-44 351.6 11.2 263 500-783 61-363 (371)
236 3o6n_A APL1; leucine-rich repe 100.0 6.6E-38 2.3E-42 342.2 23.4 336 35-423 43-378 (390)
237 3an0_A Dual specificity mitoge 100.0 1.2E-38 4.1E-43 341.4 17.1 250 500-774 50-310 (340)
238 2vwi_A Serine/threonine-protei 100.0 2E-39 6.9E-44 341.6 10.8 261 499-774 13-287 (303)
239 2ycf_A Serine/threonine-protei 100.0 2.2E-38 7.4E-43 336.6 18.7 253 498-774 7-274 (322)
240 3q5i_A Protein kinase; CDPK, m 100.0 4.1E-38 1.4E-42 355.1 22.1 251 499-774 34-301 (504)
241 2fst_X Mitogen-activated prote 100.0 1.3E-38 4.4E-43 343.4 16.9 262 500-774 28-311 (367)
242 1x8b_A WEE1HU, WEE1-like prote 100.0 4.9E-38 1.7E-42 328.5 20.6 244 499-774 9-279 (289)
243 2wtk_C Serine/threonine-protei 100.0 2.8E-38 9.7E-43 333.1 18.8 251 500-775 4-264 (305)
244 2j0j_A Focal adhesion kinase 1 100.0 1.2E-38 3.9E-43 368.3 17.0 259 499-782 388-652 (656)
245 1phk_A Phosphorylase kinase; g 100.0 5.6E-38 1.9E-42 329.7 20.7 252 499-774 15-283 (298)
246 2xrw_A Mitogen-activated prote 100.0 7.7E-38 2.6E-42 338.8 22.4 262 500-774 24-318 (371)
247 3nyv_A Calmodulin-domain prote 100.0 1.6E-38 5.4E-43 357.2 17.3 250 500-774 25-281 (484)
248 1vzo_A Ribosomal protein S6 ki 100.0 5E-39 1.7E-43 345.7 12.2 254 500-775 53-322 (355)
249 3kvw_A DYRK2, dual specificity 100.0 6.1E-38 2.1E-42 345.5 21.1 197 500-707 96-302 (429)
250 3pfq_A PKC-B, PKC-beta, protei 100.0 2E-38 6.9E-43 367.4 18.0 249 499-774 339-597 (674)
251 3eb0_A Putative uncharacterize 100.0 2.1E-38 7.1E-43 345.0 16.8 272 497-781 3-330 (383)
252 2i6l_A Mitogen-activated prote 100.0 5.2E-38 1.8E-42 333.6 18.7 266 500-774 10-305 (320)
253 2y4i_B KSR2, HKSR2, kinase sup 100.0 1.5E-39 5E-44 345.4 6.0 261 500-785 32-306 (319)
254 1wak_A Serine/threonine-protei 100.0 4.5E-38 1.5E-42 344.8 17.8 264 500-774 36-391 (397)
255 2r3i_A Cell division protein k 100.0 2.6E-38 8.9E-43 332.4 15.0 266 501-774 3-283 (299)
256 1zy4_A Serine/threonine-protei 100.0 8E-38 2.7E-42 329.3 18.0 253 499-774 4-283 (303)
257 2b9h_A MAP kinase FUS3, mitoge 100.0 1.2E-37 4.1E-42 335.6 19.6 267 500-774 10-305 (353)
258 2x7f_A TRAF2 and NCK-interacti 100.0 3.7E-38 1.3E-42 335.6 15.4 255 495-774 18-286 (326)
259 3rgf_A Cyclin-dependent kinase 100.0 8.8E-38 3E-42 342.7 18.7 268 500-774 19-333 (405)
260 3oja_B Anopheles plasmodium-re 100.0 4.2E-37 1.4E-41 354.4 25.1 336 35-423 49-384 (597)
261 4exu_A Mitogen-activated prote 100.0 1.6E-37 5.6E-42 336.2 19.9 261 500-774 41-323 (371)
262 1z57_A Dual specificity protei 100.0 2.1E-37 7.1E-42 331.7 20.4 262 500-774 13-328 (339)
263 2wei_A Calmodulin-domain prote 100.0 2.2E-37 7.7E-42 323.1 18.9 252 497-774 18-276 (287)
264 3o6n_A APL1; leucine-rich repe 100.0 1.6E-36 5.4E-41 331.3 26.4 335 11-399 43-377 (390)
265 4e7w_A Glycogen synthase kinas 100.0 5.1E-38 1.8E-42 342.5 13.9 262 500-774 39-321 (394)
266 1j1b_A Glycogen synthase kinas 100.0 9.3E-38 3.2E-42 343.3 16.0 261 501-774 54-336 (420)
267 2vx3_A Dual specificity tyrosi 100.0 6.2E-37 2.1E-41 333.2 22.1 202 497-707 50-261 (382)
268 1blx_A Cyclin-dependent kinase 100.0 1.4E-37 4.8E-42 331.2 15.6 267 499-774 9-296 (326)
269 3aln_A Dual specificity mitoge 100.0 7.4E-38 2.5E-42 333.4 12.8 253 500-774 21-285 (327)
270 2dyl_A Dual specificity mitoge 100.0 2.5E-37 8.5E-42 328.0 16.4 251 500-774 24-283 (318)
271 3coi_A Mitogen-activated prote 100.0 4.5E-37 1.6E-41 330.8 17.8 261 500-774 23-305 (353)
272 2eu9_A Dual specificity protei 100.0 9.2E-37 3.1E-41 329.0 20.1 262 500-774 18-333 (355)
273 3a99_A Proto-oncogene serine/t 100.0 5.8E-38 2E-42 332.7 9.9 243 497-774 39-293 (320)
274 3fhr_A MAP kinase-activated pr 100.0 3.3E-37 1.1E-41 329.0 15.8 252 499-774 26-287 (336)
275 3bz5_A Internalin-J, INLJ; leu 100.0 3E-36 1E-40 334.1 23.9 346 20-417 25-385 (457)
276 3e3p_A Protein kinase, putativ 100.0 1.1E-36 3.7E-41 329.1 19.5 273 494-774 16-314 (360)
277 2rio_A Serine/threonine-protei 100.0 3E-37 1E-41 340.8 15.3 251 501-774 15-295 (434)
278 1q8y_A SR protein kinase; tran 100.0 8E-37 2.7E-41 331.8 18.2 264 500-774 18-333 (373)
279 4fmz_A Internalin; leucine ric 100.0 1E-35 3.4E-40 319.7 26.4 307 33-396 40-346 (347)
280 1jl5_A Outer protein YOPM; leu 100.0 2.1E-36 7.2E-41 335.0 21.3 352 8-420 6-371 (454)
281 2iwi_A Serine/threonine-protei 100.0 1.5E-37 5E-42 328.8 11.2 245 495-774 25-283 (312)
282 3p23_A Serine/threonine-protei 100.0 6.7E-37 2.3E-41 336.7 16.3 250 500-774 23-283 (432)
283 4fmz_A Internalin; leucine ric 100.0 2.4E-35 8.1E-40 316.8 26.6 308 8-372 39-346 (347)
284 3oja_B Anopheles plasmodium-re 100.0 1.3E-35 4.3E-40 342.0 25.7 313 11-375 49-361 (597)
285 3qa8_A MGC80376 protein; kinas 100.0 7E-37 2.4E-41 346.1 12.9 270 500-780 13-308 (676)
286 1ogq_A PGIP-2, polygalacturona 100.0 3.2E-36 1.1E-40 317.7 16.5 241 182-424 67-309 (313)
287 3uqc_A Probable conserved tran 100.0 8.1E-36 2.8E-40 310.1 16.2 233 501-783 31-267 (286)
288 2pzi_A Probable serine/threoni 100.0 9.5E-36 3.3E-40 347.7 16.0 241 500-781 79-328 (681)
289 2ft3_A Biglycan; proteoglycan, 100.0 5E-34 1.7E-38 304.2 26.1 289 37-394 33-331 (332)
290 2ft3_A Biglycan; proteoglycan, 100.0 5.3E-34 1.8E-38 304.0 25.7 299 4-345 18-330 (332)
291 3dzo_A Rhoptry kinase domain; 100.0 4.9E-36 1.7E-40 328.8 9.3 239 501-774 78-363 (413)
292 3m2w_A MAP kinase-activated pr 100.0 6.4E-35 2.2E-39 306.3 17.0 230 500-774 16-256 (299)
293 1xku_A Decorin; proteoglycan, 100.0 1.2E-33 4E-38 301.1 26.9 290 37-394 31-330 (330)
294 1xku_A Decorin; proteoglycan, 100.0 4E-33 1.4E-37 297.1 26.4 292 12-345 30-329 (330)
295 2vuw_A Serine/threonine-protei 100.0 4.5E-35 1.5E-39 312.9 8.5 243 500-773 19-329 (336)
296 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-34 8.5E-39 303.2 13.4 253 142-398 50-307 (313)
297 1z7x_W Ribonuclease inhibitor; 100.0 1.4E-36 4.8E-41 339.9 -6.5 360 13-398 3-413 (461)
298 1z7x_W Ribonuclease inhibitor; 100.0 2.8E-36 9.6E-41 337.4 -7.2 365 9-397 24-441 (461)
299 2z66_A Variable lymphocyte rec 100.0 2.3E-30 7.9E-35 272.6 19.9 279 41-356 11-295 (306)
300 2z66_A Variable lymphocyte rec 100.0 1.6E-30 5.4E-35 273.8 18.2 278 65-401 10-292 (306)
301 2z80_A TOLL-like receptor 2, v 100.0 7.9E-31 2.7E-35 282.0 15.4 283 36-376 30-318 (353)
302 2z80_A TOLL-like receptor 2, v 100.0 1E-30 3.5E-35 281.2 15.5 282 7-324 25-314 (353)
303 1ozn_A Reticulon 4 receptor; N 100.0 5.3E-30 1.8E-34 266.8 17.8 233 191-423 32-265 (285)
304 3zyi_A Leucine-rich repeat-con 100.0 1.5E-29 5E-34 281.5 20.6 252 144-401 56-308 (452)
305 3zyj_A Leucine-rich repeat-con 100.0 6.3E-29 2.1E-33 275.4 24.9 248 38-324 44-292 (440)
306 3zyj_A Leucine-rich repeat-con 100.0 2.1E-29 7.1E-34 279.3 20.4 252 144-401 45-297 (440)
307 1wwl_A Monocyte differentiatio 100.0 1.6E-30 5.3E-35 274.3 10.4 250 138-398 39-311 (312)
308 1ozn_A Reticulon 4 receptor; N 100.0 2.1E-29 7.2E-34 262.3 18.7 255 40-356 14-269 (285)
309 3zyi_A Leucine-rich repeat-con 100.0 8.1E-29 2.8E-33 275.5 24.3 248 38-324 55-303 (452)
310 3oja_A Leucine-rich immune mol 100.0 3.1E-30 1E-34 288.5 9.7 149 239-391 120-270 (487)
311 3g06_A SSPH2 (leucine-rich rep 100.0 3.2E-28 1.1E-32 277.4 26.1 268 14-383 41-308 (622)
312 4fcg_A Uncharacterized protein 100.0 8.3E-29 2.8E-33 262.5 19.2 227 141-397 80-315 (328)
313 3o53_A Protein LRIM1, AGAP0063 100.0 3E-30 1E-34 272.7 7.6 266 39-352 12-280 (317)
314 3g06_A SSPH2 (leucine-rich rep 100.0 3.8E-28 1.3E-32 276.7 24.5 253 4-357 54-306 (622)
315 4fcg_A Uncharacterized protein 100.0 1.5E-28 5E-33 260.6 19.4 134 187-322 179-312 (328)
316 3o53_A Protein LRIM1, AGAP0063 100.0 9.6E-30 3.3E-34 268.9 6.7 267 64-401 12-281 (317)
317 1wwl_A Monocyte differentiatio 100.0 1.4E-29 4.7E-34 267.0 6.4 252 11-325 41-310 (312)
318 3ogk_B Coronatine-insensitive 100.0 2.8E-31 9.5E-36 306.8 -7.4 404 6-417 66-524 (592)
319 3ogk_B Coronatine-insensitive 100.0 8.3E-31 2.9E-35 302.8 -6.9 375 11-398 110-528 (592)
320 4azs_A Methyltransferase WBDD; 99.9 1.3E-28 4.5E-33 278.9 7.0 185 508-703 241-437 (569)
321 2z62_A TOLL-like receptor 4, v 99.9 8E-27 2.7E-31 241.5 18.9 211 191-402 28-243 (276)
322 3oja_A Leucine-rich immune mol 99.9 1.2E-27 4E-32 267.5 12.3 234 63-343 35-270 (487)
323 2o6q_A Variable lymphocyte rec 99.9 1.5E-25 5.1E-30 231.0 22.5 206 192-400 17-222 (270)
324 2z62_A TOLL-like receptor 4, v 99.9 7.9E-26 2.7E-30 234.0 17.8 207 169-376 30-241 (276)
325 1p9a_G Platelet glycoprotein I 99.9 3.5E-25 1.2E-29 230.1 19.8 207 187-400 6-212 (290)
326 2o6q_A Variable lymphocyte rec 99.9 1E-24 3.5E-29 224.7 22.6 205 143-375 17-221 (270)
327 3rfs_A Internalin B, repeat mo 99.9 1.4E-25 4.6E-30 231.4 15.8 185 190-383 62-246 (272)
328 3rfs_A Internalin B, repeat mo 99.9 2.4E-25 8.3E-30 229.5 16.7 222 168-402 20-241 (272)
329 1p9a_G Platelet glycoprotein I 99.9 6.5E-25 2.2E-29 228.1 19.2 207 210-422 5-211 (290)
330 2p1m_B Transport inhibitor res 99.9 7.7E-28 2.6E-32 278.1 -5.3 399 9-417 62-517 (594)
331 2p1m_B Transport inhibitor res 99.9 1E-27 3.5E-32 277.0 -4.5 374 9-397 101-520 (594)
332 3en9_A Glycoprotease, O-sialog 99.9 7.3E-26 2.5E-30 255.0 10.1 186 504-705 339-539 (540)
333 3goz_A Leucine-rich repeat-con 99.9 5.2E-26 1.8E-30 245.0 7.8 265 17-331 2-304 (362)
334 2ca6_A RAN GTPase-activating p 99.9 1.6E-26 5.6E-31 251.5 -0.5 189 187-375 90-319 (386)
335 4glp_A Monocyte differentiatio 99.9 2.4E-24 8.1E-29 226.8 15.3 202 190-397 90-308 (310)
336 2xwt_C Thyrotropin receptor; s 99.9 5.1E-24 1.8E-28 215.2 15.1 196 192-393 32-236 (239)
337 3goz_A Leucine-rich repeat-con 99.9 3.1E-25 1E-29 239.0 6.1 123 1-123 10-151 (362)
338 2ca6_A RAN GTPase-activating p 99.9 3.3E-26 1.1E-30 249.1 -2.0 245 135-400 25-320 (386)
339 2xwt_C Thyrotropin receptor; s 99.9 3.6E-24 1.2E-28 216.4 12.0 197 168-370 32-237 (239)
340 1h6u_A Internalin H; cell adhe 99.9 1.2E-23 4.2E-28 220.7 16.2 213 169-399 21-233 (308)
341 3m19_A Variable lymphocyte rec 99.9 3.6E-23 1.2E-27 210.5 18.8 179 192-373 15-193 (251)
342 3m19_A Variable lymphocyte rec 99.9 4.1E-23 1.4E-27 210.2 18.3 183 215-400 14-196 (251)
343 1h6u_A Internalin H; cell adhe 99.9 2.2E-23 7.7E-28 218.7 14.4 196 138-374 37-232 (308)
344 4ay9_X Follicle-stimulating ho 99.9 9.7E-23 3.3E-27 218.2 18.1 242 40-370 12-257 (350)
345 4glp_A Monocyte differentiatio 99.9 3E-23 1E-27 218.3 13.6 224 191-419 64-307 (310)
346 4ay9_X Follicle-stimulating ho 99.9 1.7E-23 5.9E-28 224.0 11.5 247 9-298 6-257 (350)
347 2ast_B S-phase kinase-associat 99.9 2E-24 6.8E-29 230.5 3.5 254 39-333 49-315 (336)
348 2ast_B S-phase kinase-associat 99.9 3E-24 1E-28 229.1 4.9 252 143-402 48-312 (336)
349 1zar_A RIO2 kinase; serine kin 99.9 1E-22 3.4E-27 210.1 7.5 149 497-677 86-252 (282)
350 2o6s_A Variable lymphocyte rec 99.9 2.1E-21 7.2E-26 191.5 16.5 163 191-360 28-190 (208)
351 2o6s_A Variable lymphocyte rec 99.9 2.6E-21 8.7E-26 190.9 14.6 179 194-382 10-188 (208)
352 3cvr_A Invasion plasmid antige 99.9 3.7E-21 1.3E-25 216.4 15.6 169 191-384 80-255 (571)
353 2v70_A SLIT-2, SLIT homolog 2 99.8 2.7E-21 9.4E-26 192.0 10.8 156 243-401 15-171 (220)
354 3cvr_A Invasion plasmid antige 99.8 1.6E-20 5.4E-25 211.3 18.2 182 192-401 60-248 (571)
355 1h6t_A Internalin B; cell adhe 99.8 6.9E-21 2.3E-25 197.9 13.8 188 169-372 26-213 (291)
356 2v9t_B SLIT homolog 2 protein 99.8 4E-21 1.4E-25 190.9 11.5 155 243-400 15-169 (220)
357 2xot_A Amphoterin-induced prot 99.8 1.3E-20 4.5E-25 202.5 13.8 176 194-372 21-202 (361)
358 1m9s_A Internalin B; cell inva 99.8 3.8E-20 1.3E-24 210.6 15.8 199 168-382 22-220 (605)
359 1h6t_A Internalin B; cell adhe 99.8 4.4E-20 1.5E-24 191.8 14.5 192 192-399 25-216 (291)
360 1m9s_A Internalin B; cell inva 99.8 5.9E-20 2E-24 209.1 15.3 130 187-326 83-212 (605)
361 2v9t_B SLIT homolog 2 protein 99.8 1E-19 3.5E-24 180.7 14.7 134 240-373 33-166 (220)
362 3e6j_A Variable lymphocyte rec 99.8 1.7E-19 5.7E-24 180.4 15.7 137 263-400 40-176 (229)
363 2xot_A Amphoterin-induced prot 99.8 5.7E-20 1.9E-24 197.5 12.6 179 218-399 21-205 (361)
364 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-19 5.3E-24 179.3 14.3 134 243-376 36-170 (220)
365 3sb4_A Hypothetical leucine ri 99.8 1.3E-20 4.4E-25 199.9 5.8 296 2-317 12-327 (329)
366 3e6j_A Variable lymphocyte rec 99.8 6.8E-19 2.3E-23 176.0 17.0 155 218-376 22-176 (229)
367 1dce_A Protein (RAB geranylger 99.8 5.1E-21 1.8E-25 216.6 -0.1 211 83-341 346-566 (567)
368 1dce_A Protein (RAB geranylger 99.8 1.6E-21 5.6E-26 220.6 -4.7 202 35-280 347-550 (567)
369 1xeu_A Internalin C; cellular 99.8 1.6E-19 5.6E-24 184.4 8.4 168 168-374 20-187 (263)
370 1xeu_A Internalin C; cellular 99.8 4.9E-19 1.7E-23 180.9 11.9 170 140-325 17-186 (263)
371 4ezg_A Putative uncharacterize 99.8 6.4E-19 2.2E-23 171.8 12.1 153 188-372 41-194 (197)
372 4ezg_A Putative uncharacterize 99.8 7.2E-19 2.5E-23 171.5 12.2 154 236-397 41-195 (197)
373 4b8c_D Glucose-repressible alc 99.8 2.4E-19 8.2E-24 209.4 9.8 224 142-397 173-405 (727)
374 1w8a_A SLIT protein; signaling 99.8 7.1E-19 2.4E-23 170.6 9.3 175 242-423 11-187 (192)
375 3sb4_A Hypothetical leucine ri 99.8 3.1E-19 1E-23 189.3 7.1 102 286-389 225-327 (329)
376 1w8a_A SLIT protein; signaling 99.7 6.8E-18 2.3E-22 163.6 13.4 155 266-423 11-166 (192)
377 1zth_A RIO1 serine protein kin 99.7 2.3E-18 7.9E-23 175.3 10.2 137 503-652 49-219 (258)
378 4fdw_A Leucine rich hypothetic 99.7 8.1E-17 2.8E-21 174.2 22.4 264 13-347 113-382 (401)
379 4b8c_D Glucose-repressible alc 99.7 3.2E-18 1.1E-22 199.9 10.5 155 28-201 215-369 (727)
380 4fdw_A Leucine rich hypothetic 99.7 9.9E-17 3.4E-21 173.5 19.5 267 60-372 111-383 (401)
381 2wfh_A SLIT homolog 2 protein 99.7 2.2E-17 7.4E-22 160.0 9.9 131 266-400 13-143 (193)
382 2ell_A Acidic leucine-rich nuc 99.7 1.2E-16 3.9E-21 151.5 12.1 135 263-399 24-163 (168)
383 4fs7_A Uncharacterized protein 99.7 1.2E-15 4E-20 165.9 21.5 335 24-387 58-392 (394)
384 2ell_A Acidic leucine-rich nuc 99.7 1.4E-16 4.9E-21 150.8 11.8 84 191-276 24-108 (168)
385 4fs7_A Uncharacterized protein 99.7 1.5E-15 5.2E-20 165.1 20.6 328 8-364 66-393 (394)
386 2je0_A Acidic leucine-rich nuc 99.6 2.4E-16 8.2E-21 146.0 9.4 128 263-392 17-149 (149)
387 2o6r_A Variable lymphocyte rec 99.6 6.6E-16 2.3E-20 147.6 12.7 113 288-400 29-141 (177)
388 2wfh_A SLIT homolog 2 protein 99.6 1.5E-15 5.2E-20 147.0 14.3 127 194-324 13-139 (193)
389 2je0_A Acidic leucine-rich nuc 99.6 3.3E-16 1.1E-20 145.1 9.1 126 191-318 17-147 (149)
390 4gyi_A RIO2 kinase; protein ki 99.6 1.5E-16 5.1E-21 167.6 6.8 139 503-652 97-265 (397)
391 2o6r_A Variable lymphocyte rec 99.6 2E-15 6.7E-20 144.3 13.5 132 242-376 10-141 (177)
392 1a9n_A U2A', U2A'; complex (nu 99.6 1.7E-15 5.7E-20 144.6 9.2 133 259-397 15-154 (176)
393 1ds9_A Outer arm dynein; leuci 99.6 3.2E-17 1.1E-21 159.9 -5.5 134 257-397 42-186 (198)
394 1a9n_A U2A', U2A'; complex (nu 99.6 3.4E-15 1.2E-19 142.4 8.5 105 264-372 43-153 (176)
395 1ds9_A Outer arm dynein; leuci 99.5 7.1E-17 2.4E-21 157.4 -7.0 129 191-324 18-153 (198)
396 4gt6_A Cell surface protein; l 99.5 8.8E-13 3E-17 143.2 21.7 322 25-395 51-390 (394)
397 3g39_A Variable lymphocyte rec 99.5 5.4E-14 1.8E-18 133.0 10.4 90 311-400 30-119 (170)
398 4gt6_A Cell surface protein; l 99.5 1.4E-12 4.8E-17 141.5 22.9 303 49-396 51-370 (394)
399 2r9u_A Variable lymphocyte rec 99.5 1.2E-13 4.2E-18 131.0 10.6 104 266-372 15-118 (174)
400 3g39_A Variable lymphocyte rec 99.5 2.4E-13 8.4E-18 128.5 11.7 108 265-375 11-118 (170)
401 3un9_A NLR family member X1; l 99.5 1.3E-15 4.3E-20 163.2 -4.9 177 37-238 72-262 (372)
402 2r9u_A Variable lymphocyte rec 99.4 3.6E-13 1.2E-17 127.7 11.5 85 240-324 34-118 (174)
403 3un9_A NLR family member X1; l 99.4 7.7E-15 2.6E-19 157.1 -6.1 171 191-381 72-261 (372)
404 4h09_A Hypothetical leucine ri 99.4 4.4E-11 1.5E-15 129.1 22.6 314 9-358 42-355 (379)
405 2ifg_A High affinity nerve gro 99.3 4E-12 1.4E-16 135.5 11.6 131 268-401 13-146 (347)
406 4h09_A Hypothetical leucine ri 99.3 3.8E-10 1.3E-14 121.7 23.8 291 7-336 63-357 (379)
407 2ifg_A High affinity nerve gro 99.2 2.2E-11 7.4E-16 129.8 11.3 102 195-299 12-115 (347)
408 3tm0_A Aminoglycoside 3'-phosp 99.2 3.3E-11 1.1E-15 122.9 10.7 148 496-650 9-212 (263)
409 1nd4_A Aminoglycoside 3'-phosp 99.1 2.1E-10 7.3E-15 116.7 8.3 138 501-650 20-213 (264)
410 2ra8_A Uncharacterized protein 99.0 2.8E-10 9.7E-15 120.5 4.6 207 13-250 107-341 (362)
411 2ra8_A Uncharacterized protein 98.9 1.5E-10 5.2E-15 122.6 2.0 84 310-394 251-341 (362)
412 3dxp_A Putative acyl-COA dehyd 98.9 4.8E-09 1.6E-13 112.1 9.6 143 505-651 42-248 (359)
413 3sg8_A APH(2'')-ID; antibiotic 98.8 2E-09 7E-14 112.1 4.3 188 506-704 25-287 (304)
414 1io0_A Tropomodulin; LRR prote 98.6 9.3E-09 3.2E-13 98.2 0.8 120 32-156 31-165 (185)
415 1io0_A Tropomodulin; LRR prote 98.5 1.3E-08 4.5E-13 97.1 1.1 71 138-229 32-107 (185)
416 3r70_A Aminoglycoside phosphot 98.5 6.8E-07 2.3E-11 93.5 12.2 137 502-651 38-237 (320)
417 3rw6_A Nuclear RNA export fact 98.5 2.5E-08 8.6E-13 99.9 0.9 80 308-389 167-257 (267)
418 3rw6_A Nuclear RNA export fact 98.4 5.9E-08 2E-12 97.2 1.9 113 33-148 137-257 (267)
419 3tdw_A Gentamicin resistance p 98.3 4.2E-06 1.4E-10 86.8 13.0 137 506-651 24-224 (306)
420 4gkh_A Aminoglycoside 3'-phosp 98.3 4.2E-06 1.4E-10 85.2 12.5 135 508-650 31-222 (272)
421 3d1u_A Putative fructosamine-3 98.3 2.4E-06 8.2E-11 87.5 10.1 77 504-584 18-97 (288)
422 3ovc_A Hygromycin-B 4-O-kinase 98.2 4.5E-06 1.5E-10 88.6 9.9 143 504-652 44-244 (362)
423 3ats_A Putative uncharacterize 98.0 5.3E-06 1.8E-10 88.2 6.3 80 506-585 25-121 (357)
424 3e4g_A ATP synthase subunit S, 98.0 1.6E-06 5.6E-11 80.3 1.5 82 192-273 62-149 (176)
425 3e4g_A ATP synthase subunit S, 98.0 1.5E-06 5.2E-11 80.5 1.2 84 13-96 61-149 (176)
426 2olc_A MTR kinase, methylthior 97.7 9.5E-05 3.2E-09 79.7 10.6 75 506-582 35-120 (397)
427 2q83_A YTAA protein; 2635576, 97.7 0.00019 6.4E-09 75.6 12.7 139 507-650 38-251 (346)
428 1pgv_A TMD-1, tropomodulin TMD 97.6 1.2E-05 4.2E-10 75.9 1.4 68 81-152 65-136 (197)
429 1pgv_A TMD-1, tropomodulin TMD 97.6 1.4E-05 4.7E-10 75.6 0.8 18 138-155 66-83 (197)
430 3f7w_A Putative fructosamine-3 97.5 0.00021 7.3E-09 73.1 9.1 78 502-583 16-96 (288)
431 3jr1_A Putative fructosamine-3 97.5 0.00058 2E-08 70.3 12.2 138 505-647 40-232 (312)
432 2pyw_A Uncharacterized protein 97.3 0.00084 2.9E-08 72.8 11.5 80 620-701 231-313 (420)
433 3rfe_A Platelet glycoprotein I 97.1 0.00069 2.4E-08 59.7 6.0 60 339-400 12-72 (130)
434 3rfe_A Platelet glycoprotein I 97.0 0.00093 3.2E-08 58.9 5.7 56 41-99 12-68 (130)
435 2ppq_A HSK, HK, homoserine kin 96.9 0.0034 1.2E-07 65.1 10.9 156 492-650 8-216 (322)
436 3dxq_A Choline/ethanolamine ki 96.9 0.0026 9E-08 65.3 9.7 137 506-651 23-202 (301)
437 3csv_A Aminoglycoside phosphot 96.9 0.0057 2E-07 63.8 12.3 140 507-651 24-217 (333)
438 2yle_A Protein spire homolog 1 96.7 0.0069 2.3E-07 57.3 10.0 103 582-703 33-135 (229)
439 1zyl_A Hypothetical protein YI 96.7 0.017 5.7E-07 60.0 14.1 155 493-651 13-223 (328)
440 1nw1_A Choline kinase (49.2 KD 96.7 0.0026 8.9E-08 68.9 7.8 71 506-582 78-157 (429)
441 3feg_A Choline/ethanolamine ki 96.6 0.0073 2.5E-07 63.8 10.6 139 507-650 56-253 (379)
442 2qg7_A Ethanolamine kinase PV0 96.3 0.006 2.1E-07 66.3 7.5 73 506-583 113-187 (458)
443 3c5i_A Choline kinase; choline 96.2 0.0057 1.9E-07 64.9 6.7 73 506-583 38-120 (369)
444 3i1a_A Spectinomycin phosphotr 96.0 0.024 8.1E-07 59.2 10.1 32 620-651 205-236 (339)
445 3f2s_A CK, chetk-alpha, cholin 94.5 0.22 7.4E-06 52.7 11.6 140 507-650 58-279 (401)
446 3mes_A Choline kinase; malaria 93.6 0.23 7.7E-06 53.1 9.7 73 506-583 75-156 (424)
447 3g15_A CK, chetk-alpha, cholin 87.5 0.091 3.1E-06 56.1 -0.6 30 622-651 245-280 (401)
448 3cxl_A N-chimerin; SH2, RHO-GA 81.2 0.2 6.9E-06 54.3 -1.4 59 505-566 146-213 (463)
449 4ano_A ESSB; membrane protein, 79.9 3.9 0.00013 38.7 7.1 116 555-706 48-164 (219)
450 4ann_A ESSB; membrane protein, 72.5 3.5 0.00012 38.9 4.5 120 555-710 43-163 (215)
451 2lz0_A Uncharacterized protein 57.1 26 0.00089 28.4 6.5 46 179-225 8-53 (100)
452 2lz0_A Uncharacterized protein 50.6 37 0.0013 27.4 6.5 47 201-248 6-52 (100)
453 2x6h_A GH13170P, VPS34, phosph 45.0 3.2E+02 0.011 30.6 14.9 45 598-650 529-575 (696)
454 1cja_A Protein (actin-fragmin 36.9 84 0.0029 31.7 7.7 140 503-651 71-237 (342)
455 3ls8_A Phosphatidylinositol 3- 36.0 4.8E+02 0.016 28.7 15.8 81 561-650 403-501 (614)
456 3hhm_A Phosphatidylinositol-4, 20.3 3.1E+02 0.011 32.5 9.6 61 582-650 898-961 (1091)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-55 Score=523.45 Aligned_cols=427 Identities=31% Similarity=0.532 Sum_probs=334.1
Q ss_pred cCCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCc
Q 003855 4 QIPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSIT 83 (791)
Q Consensus 4 ~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 83 (791)
.+|..|+++++|++|+|++|++++.+|.. .+++|++|+|++|++++.+|..++..+++|++|+|++|++++..|..|+
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence 33444444444444444444444333332 3444444444445554556666655446777777777777777777777
Q ss_pred CCCCCCEEeccCcccccccc-cccccccccccccccccccc-ccCCCcccc----------------ccccccCC--CCC
Q 003855 84 NATKLVALDLGFNSFAGHIL-NTFGNLRHLSLLSQVMNNLT-TESSSADQW----------------SFLSSLTN--CRN 143 (791)
Q Consensus 84 ~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~----------------~~~~~l~~--l~~ 143 (791)
++++|++|+|++|++.+..+ ..|.++++|+.|++++|+++ .++...... ..+..+.. +++
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence 77777777777777764444 33777777777777777765 332211110 11223333 667
Q ss_pred CcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcc
Q 003855 144 LTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLR 223 (791)
Q Consensus 144 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 223 (791)
|++|++++|++++.+|..+..+ ++|++|++++|.+++.+|..|.++++|+.|++++|.+++.+|..|..+++|++|+|+
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred ccEEECCCCccccccCHHHhcC-CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 8888888888887777777665 468888888888888888888888889999999988888888888889999999999
Q ss_pred cccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccC
Q 003855 224 NNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSL 303 (791)
Q Consensus 224 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~ 303 (791)
+|++++.+|..+..+++|+.|+|++|++++.+|.+++.+++|++|+|++|++.+.+|..+..+++|+.|++++|.+++.+
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 99998888989999999999999999999889999999999999999999998889999999999999999999888766
Q ss_pred Cccc----------------------------------------------------------------------ccCCCC
Q 003855 304 PSNV----------------------------------------------------------------------QKLKVL 313 (791)
Q Consensus 304 ~~~~----------------------------------------------------------------------~~l~~L 313 (791)
|..+ ..+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 6543 335678
Q ss_pred CEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCC
Q 003855 314 TVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHN 393 (791)
Q Consensus 314 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N 393 (791)
+.|||++|++++.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+..+++|++||+++|
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCcCCccccccCCccccCCCCCCCCCCCCCCCC
Q 003855 394 RLEGEIPVKGSFKNFSVESFFGNYALCGPPKLRVPPCKPDNSK 436 (791)
Q Consensus 394 ~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~~~~~c~~~~~~ 436 (791)
+++|.+|..+.+.++...++.||+++||+|. ++|.+....
T Consensus 715 ~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l---~~C~~~~~~ 754 (768)
T 3rgz_A 715 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPL---PRCDPSNAD 754 (768)
T ss_dssp EEEEECCSSSSGGGSCGGGGCSCTEEESTTS---CCCCSCC--
T ss_pred cccccCCCchhhccCCHHHhcCCchhcCCCC---cCCCCCccC
Confidence 9999999999999999999999999999884 378765543
No 2
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-54 Score=448.69 Aligned_cols=264 Identities=27% Similarity=0.443 Sum_probs=209.2
Q ss_pred hccccccccCCCcceEEEEEEecCCcEEEEEEeehh--hhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEec
Q 003855 501 DEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQ--LERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEF 578 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 578 (791)
++++..+.||+|+||+||+|++++ .||||+++.. ..+..+.|.+|+.++++++|||||+++|++.+ +..++||||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy 112 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQW 112 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred HHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEc
Confidence 577888999999999999999753 6999998643 24556789999999999999999999999865 568999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCc
Q 003855 579 MPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDS 658 (791)
Q Consensus 579 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~ 658 (791)
|++|+|.++++.....+++.++..|+.|||+||+||| +.+||||||||+|||+++++.+||+|||+|+........
T Consensus 113 ~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH----~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~ 188 (307)
T 3omv_A 113 CEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH----AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp CSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH----HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC-------
T ss_pred CCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH----HCCccCCccCHHHEEECCCCcEEEeeccCceecccCCcc
Confidence 9999999999877777999999999999999999999 678999999999999999999999999999876554444
Q ss_pred ceeecccccccccCCCccC---CCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 659 VTQTMTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 659 ~~~~~~~g~~~y~aPE~~~---~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
......+||+.|||||++. .+.|+.++|||||||++|||+||+.||.+..... .+...+...... +.+.
T Consensus 189 ~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~-~~~~~~~~~~~~-------p~~~ 260 (307)
T 3omv_A 189 QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD-QIIFMVGRGYAS-------PDLS 260 (307)
T ss_dssp -----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH-HHHHHHHTTCCC-------CCST
T ss_pred eeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHH-HHHHHHhcCCCC-------CCcc
Confidence 4445568999999999875 3569999999999999999999999997643221 122212111100 0000
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcc
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLD 785 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~ 785 (791)
..+..|+.++.+++.+||+.||++||||.||++.|+.++...++
T Consensus 261 ------~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lpk 304 (307)
T 3omv_A 261 ------KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304 (307)
T ss_dssp ------TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred ------cccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCCC
Confidence 01224667889999999999999999999999999998765543
No 3
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=2.8e-55 Score=455.01 Aligned_cols=261 Identities=27% Similarity=0.424 Sum_probs=218.0
Q ss_pred hccccccccCCCcceEEEEEEec------CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeE
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS------DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 574 (791)
++|.+.+.||+|+||.||+|++. +++.||||+++.......+.|.+|+++|++++|||||+++|+|.+++..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 57888899999999999999863 478899999987766677889999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCC------------CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEE
Q 003855 575 VLEFMPNGSLEKWLYSHN------------YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAH 642 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~k 642 (791)
|||||++|+|.++++..+ ..++|.++..|+.|||+||+||| +++|+||||||+|||+++++.+|
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH----~~~iiHRDlKp~NILl~~~~~~K 168 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA----SQHFVHRDLATRNCLVGENLLVK 168 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECGGGCEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hCCcccCccCHhhEEECCCCcEE
Confidence 999999999999998542 45899999999999999999999 67899999999999999999999
Q ss_pred EeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHh
Q 003855 643 VSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKES 721 (791)
Q Consensus 643 l~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~ 721 (791)
|+|||+|+...............||+.|||||++.++.|+.++|||||||++|||+| |+.||.+.... .+...+...
T Consensus 169 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~--~~~~~i~~~ 246 (299)
T 4asz_A 169 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN--EVIECITQG 246 (299)
T ss_dssp ECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--HHHHHHHHT
T ss_pred ECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH--HHHHHHHcC
Confidence 999999987655443333344568999999999999999999999999999999999 89999764221 122211110
Q ss_pred cCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhc
Q 003855 722 LPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFL 784 (791)
Q Consensus 722 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~ 784 (791)
. ..+.+..|+.++.+++.+||+.||++||||.||.+.|+++.+..+
T Consensus 247 ~-----------------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~p 292 (299)
T 4asz_A 247 R-----------------VLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASP 292 (299)
T ss_dssp C-----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred C-----------------CCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCC
Confidence 0 011223567788999999999999999999999999999876543
No 4
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=1.9e-54 Score=455.10 Aligned_cols=259 Identities=25% Similarity=0.408 Sum_probs=209.8
Q ss_pred hccccccccCCCcceEEEEEEec------CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeE
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS------DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 574 (791)
++|...++||+|+||+||+|++. +++.||||+++.......+.|.+|+++|++++|||||+++|+|.+++..++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 56778889999999999999864 478899999987666677889999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCC--------------CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCc
Q 003855 575 VLEFMPNGSLEKWLYSHN--------------YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMA 640 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~--------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~ 640 (791)
|||||++|+|.++++... ..++|.++..|+.|||+||+||| +++|+||||||+|||+++++.
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH----~~~iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA----GLHFVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEEETTTE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh----cCCeecccccHhhEEECCCCc
Confidence 999999999999998532 35899999999999999999999 678999999999999999999
Q ss_pred EEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHH
Q 003855 641 AHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVK 719 (791)
Q Consensus 641 ~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~ 719 (791)
+||+|||+|+..............+||+.|||||++.+..|+.++|||||||++|||+| |+.||.+.... .....+.
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~--~~~~~i~ 274 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNT--EAIDCIT 274 (329)
T ss_dssp EEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHH--HHHHHHH
T ss_pred EEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHH--HHHHHHH
Confidence 99999999997755544444455679999999999999999999999999999999999 89999764221 1112111
Q ss_pred HhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 720 ESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 720 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
.. ...+.+..|++++.+++.+||+.||++||||.||++.|+.+.+.
T Consensus 275 ~g-----------------~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 275 QG-----------------RELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp HT-----------------CCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred cC-----------------CCCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence 10 01112235677889999999999999999999999999998654
No 5
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=1.7e-54 Score=451.04 Aligned_cols=256 Identities=23% Similarity=0.392 Sum_probs=212.3
Q ss_pred hccccccccCCCcceEEEEEEec------CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeee
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS------DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKA 573 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 573 (791)
.+++..+.||+|+||+||+|++. +++.||||+++... ....+.|.+|+.++++++|||||+++|+|.+++..+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEE
Confidence 45667789999999999999863 56889999997543 334578999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhCC---------------CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCC
Q 003855 574 LVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDEN 638 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~ 638 (791)
+|||||++|||.++|.... ..++|.++.+|+.|||+||+||| +.+||||||||+|||++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH----~~~iiHRDLK~~NILl~~~ 181 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS----SHHVVHKDLATRNVLVYDK 181 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECGG
T ss_pred EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH----hCCCCCCCccccceEECCC
Confidence 9999999999999997432 35899999999999999999999 6789999999999999999
Q ss_pred CcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHH
Q 003855 639 MAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRW 717 (791)
Q Consensus 639 ~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~ 717 (791)
+.+||+|||+|+...........+..+||++|||||++.++.|+.++|||||||++|||+| |+.||.+... ..+...
T Consensus 182 ~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~--~~~~~~ 259 (308)
T 4gt4_A 182 LNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN--QDVVEM 259 (308)
T ss_dssp GCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH--HHHHHH
T ss_pred CCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCH--HHHHHH
Confidence 9999999999987654443334445679999999999999999999999999999999999 8999976432 122222
Q ss_pred HHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHH
Q 003855 718 VKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKI 779 (791)
Q Consensus 718 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~ 779 (791)
+... ...+.+.+|+..+.++|.+||+.||++||||.||++.|+.+
T Consensus 260 i~~~-----------------~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 260 IRNR-----------------QVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HHTT-----------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHcC-----------------CCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 2211 01122335778899999999999999999999999999754
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-51 Score=489.38 Aligned_cols=407 Identities=33% Similarity=0.491 Sum_probs=339.1
Q ss_pred CCccCCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCc
Q 003855 1 MAGQIPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPH 80 (791)
Q Consensus 1 ~~g~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~ 80 (791)
++|.+|. ++++++|++|+|++|++++.+|..|.++++|++|+|++|++++.+|.. .+++|++|+|++|.+++.+|.
T Consensus 212 l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~ 287 (768)
T 3rgz_A 212 FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPD 287 (768)
T ss_dssp CCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCC
T ss_pred CCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCH
Confidence 3566776 999999999999999999888999999999999999999998777775 378999999999999988998
Q ss_pred cCcCC-CCCCEEeccCcccccccccccccccccccccccccccc-ccCCCccccccccccCCCCCCcEEEccCCCCcccC
Q 003855 81 SITNA-TKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLT-TESSSADQWSFLSSLTNCRNLTILSFGSNPLGGIL 158 (791)
Q Consensus 81 ~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 158 (791)
.+..+ ++|++|+|++|++++..+..|+++++|+.|++++|++. .++.. .+..+++|++|++++|++++.+
T Consensus 288 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~--------~l~~l~~L~~L~Ls~n~l~~~~ 359 (768)
T 3rgz_A 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD--------TLLKMRGLKVLDLSFNEFSGEL 359 (768)
T ss_dssp CSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH--------HHTTCTTCCEEECCSSEEEECC
T ss_pred HHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH--------HHhcCCCCCEEeCcCCccCccc
Confidence 88775 99999999999999999999999999999999999997 44322 2677888888888888888777
Q ss_pred Chhhhhhhh--------------------------hhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCcccc
Q 003855 159 PPVIGNFSA--------------------------SLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMG 212 (791)
Q Consensus 159 ~~~~~~~~~--------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 212 (791)
|..+..+.. +|++|++++|.+++.+|..|.++++|+.|+|++|++++..|..|.
T Consensus 360 p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 439 (768)
T 3rgz_A 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439 (768)
T ss_dssp CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh
Confidence 777766643 355556666666667777777788888888888888777788888
Q ss_pred CCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeE
Q 003855 213 RLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDI 292 (791)
Q Consensus 213 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 292 (791)
.+++|++|+|++|.+++.+|..+..+++|+.|+|++|++++.+|..+.++++|++|+|++|++++.+|.++..+++|++|
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence 88888888888888887888888888888888888888888888888888888888888888888888888888888888
Q ss_pred EccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchh----------------------------------------
Q 003855 293 NLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIG---------------------------------------- 332 (791)
Q Consensus 293 ~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~---------------------------------------- 332 (791)
+|++|++++.+|..++.+++|+.|++++|++++.+|..+.
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 8888888888888888888888888888888777665432
Q ss_pred ------------------------------ccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhc
Q 003855 333 ------------------------------ALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETL 382 (791)
Q Consensus 333 ------------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 382 (791)
.+++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|..+..+
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence 24678888889999988889889999999999999999999999999999
Q ss_pred ccCceEEccCCCCcccCCCC-CCCcCCccccccCCccc
Q 003855 383 SQLKQFNVSHNRLEGEIPVK-GSFKNFSVESFFGNYAL 419 (791)
Q Consensus 383 ~~L~~l~l~~N~l~~~~~~~-~~~~~l~~~~~~~n~~~ 419 (791)
++|+.|||++|+++|.+|.. ..+..++.+.+.+|...
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 99999999999999888864 55677888888888754
No 7
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=6.2e-52 Score=439.38 Aligned_cols=263 Identities=27% Similarity=0.417 Sum_probs=217.5
Q ss_pred HhhccccccccCCCcceEEEEEEecC------CcEEEEEEeehhh-hHHHHHHHHHHHHHHhccC-CccceeeeeeccC-
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTISD------GTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRH-RNLIKILSSCSNP- 569 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~~------~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h-~niv~l~~~~~~~- 569 (791)
-.++|++.+.||+|+||.||+|++.. ++.||||++.... ....+.|.+|+.+|++++| ||||+++|+|.++
T Consensus 62 ~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~ 141 (353)
T 4ase_A 62 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG 141 (353)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred cHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecC
Confidence 35789999999999999999998642 3679999997654 3446789999999999965 9999999998664
Q ss_pred CeeeEEEecCCCCCHHHHHhhC---------------CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeE
Q 003855 570 DFKALVLEFMPNGSLEKWLYSH---------------NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNIL 634 (791)
Q Consensus 570 ~~~~lv~e~~~~g~L~~~l~~~---------------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nil 634 (791)
+..++|||||++|+|.++|++. ...+++.++..++.|||+||+||| +++||||||||+|||
T Consensus 142 ~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH----~~~iiHRDLK~~NIL 217 (353)
T 4ase_A 142 GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA----SRKCIHRDLAARNIL 217 (353)
T ss_dssp SCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEE
T ss_pred CEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh----hCCeecCccCcccee
Confidence 5689999999999999999853 234899999999999999999999 678999999999999
Q ss_pred eCCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcch
Q 003855 635 LDENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMS 713 (791)
Q Consensus 635 l~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~ 713 (791)
+++++.+||+|||+|+.+............+||+.|||||++.++.|+.++|||||||++|||+| |+.||.+....+ .
T Consensus 218 l~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~-~ 296 (353)
T 4ase_A 218 LSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-E 296 (353)
T ss_dssp ECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH-H
T ss_pred eCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHH-H
Confidence 99999999999999998766555555556679999999999999999999999999999999998 899998643322 2
Q ss_pred HHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHh
Q 003855 714 LRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKF 783 (791)
Q Consensus 714 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~ 783 (791)
+.+.+.... ..+.+..+++++.++|.+||+.||++||||.||++.|+++.+..
T Consensus 297 ~~~~i~~g~-----------------~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 297 FCRRLKEGT-----------------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp HHHHHHHTC-----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC-----------------CCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHHh
Confidence 222222111 11112345677889999999999999999999999999987654
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=6e-52 Score=434.72 Aligned_cols=249 Identities=22% Similarity=0.321 Sum_probs=209.6
Q ss_pred hccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEecC
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEFM 579 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 579 (791)
+.|+..++||+|+||.||+|+.. +|+.||||++........+.+.+|+.+|++++|||||++++++.+++..|+|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 46899999999999999999975 79999999997665555567889999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCcc
Q 003855 580 PNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDSV 659 (791)
Q Consensus 580 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~~ 659 (791)
+||+|.+++.... +++.++..++.||+.||+||| +++|+||||||+|||++.+|.+||+|||+|+.+.....
T Consensus 154 ~gg~L~~~l~~~~--l~e~~~~~~~~qi~~aL~ylH----~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~-- 225 (346)
T 4fih_A 154 EGGALTDIVTHTR--MNEEQIAAVCLAVLQALSVLH----AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP-- 225 (346)
T ss_dssp TTEEHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC--
T ss_pred CCCcHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHH----HCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCC--
Confidence 9999999998653 899999999999999999999 67899999999999999999999999999987754322
Q ss_pred eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhhHH
Q 003855 660 TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREEQ 739 (791)
Q Consensus 660 ~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 739 (791)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.. .....+.+....+...
T Consensus 226 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~--~~~~~~~i~~~~~~~~------------- 290 (346)
T 4fih_A 226 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP--PLKAMKMIRDNLPPRL------------- 290 (346)
T ss_dssp CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC--HHHHHHHHHHSSCCCC-------------
T ss_pred cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC--HHHHHHHHHcCCCCCC-------------
Confidence 2334689999999999999999999999999999999999999997532 1122222222111110
Q ss_pred hhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 740 AFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 740 ~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.....+++++.+++.+||+.||++|||+.|+++
T Consensus 291 --~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 291 --KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp --SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred --CccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 111234567889999999999999999999976
No 9
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=2.7e-51 Score=428.50 Aligned_cols=270 Identities=21% Similarity=0.313 Sum_probs=205.5
Q ss_pred hccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCC----eeeEEE
Q 003855 501 DEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPD----FKALVL 576 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv~ 576 (791)
++|.+.+.||+|+||+||+|++ +|+.||||++...... ...++.|+..+.+++|||||+++|+|.+++ ..++||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~-~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchh-hHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 5678889999999999999998 6899999999755432 223445667777889999999999997653 579999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccC----CCCCeEecCCCCCCeEeCCCCcEEEeeecccccc
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGH----SSAPIIHCDLKPTNILLDENMAAHVSDFGISKLL 652 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~----~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~ 652 (791)
|||++|+|.++++... ++|..+.+++.|+++||+|||+.+ ...+|+||||||+|||+++++++||+|||+|+..
T Consensus 81 Ey~~~gsL~~~l~~~~--l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 158 (303)
T 3hmm_A 81 DYHEHGSLFDYLNRYT--VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH 158 (303)
T ss_dssp ECCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred cCCCCCcHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccc
Confidence 9999999999998764 899999999999999999999431 1248999999999999999999999999999876
Q ss_pred CCCCCcc--eeecccccccccCCCccCCC------CCCccccHHhHHHHHHHHHhCCCCCCccccCc----------chH
Q 003855 653 GEGEDSV--TQTMTMATIGYMAPEYGSEG------IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE----------MSL 714 (791)
Q Consensus 653 ~~~~~~~--~~~~~~g~~~y~aPE~~~~~------~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~----------~~~ 714 (791)
....... .....+||++|||||++.+. .++.++|||||||++|||+||+.|+......+ ...
T Consensus 159 ~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~ 238 (303)
T 3hmm_A 159 DSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSV 238 (303)
T ss_dssp ETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCH
T ss_pred cCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchH
Confidence 5443321 22345799999999988654 47789999999999999999987765432221 122
Q ss_pred HHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 715 RRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 715 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
............ ++.+. ......+++..+.+++.+||+.||++||||.||++.|+++.++
T Consensus 239 ~~~~~~~~~~~~----rp~~p----~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 239 EEMRKVVCEQKL----RPNIP----NRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp HHHHHHHTTSCC----CCCCC----GGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcccC----CCCCC----ccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence 222221111111 11111 1112235677889999999999999999999999999998764
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=2.7e-51 Score=428.60 Aligned_cols=257 Identities=21% Similarity=0.255 Sum_probs=209.7
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEec
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEF 578 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 578 (791)
.+.|+..++||+|+||.||+|+.. +|+.||||+++.... ..+|+.++++++|||||++++++.+++..|+||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence 357888899999999999999975 799999999975432 24699999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCC-cEEEeeeccccccCCCCC
Q 003855 579 MPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENM-AAHVSDFGISKLLGEGED 657 (791)
Q Consensus 579 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~-~~kl~Dfgla~~~~~~~~ 657 (791)
|+||+|.++++..+ .+++.++..++.||+.||+||| +++|+||||||+|||++.+| .+||+|||+|+.+.....
T Consensus 132 ~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH----~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~ 206 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG-CLPEDRALYYLGQALEGLEYLH----TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGL 206 (336)
T ss_dssp CTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC-----
T ss_pred cCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCc
Confidence 99999999998654 4899999999999999999999 78999999999999999988 699999999998754332
Q ss_pred cc---eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhh
Q 003855 658 SV---TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANL 734 (791)
Q Consensus 658 ~~---~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 734 (791)
.. .....+||+.|||||++.+..|+.++||||+||++|||+||+.||.+....+. +...... .+ ..
T Consensus 207 ~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~-~~~i~~~-~~---------~~ 275 (336)
T 4g3f_A 207 GKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL-CLKIASE-PP---------PI 275 (336)
T ss_dssp -------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC-HHHHHHS-CC---------GG
T ss_pred ccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH-HHHHHcC-CC---------Cc
Confidence 21 22335799999999999999999999999999999999999999986443322 1111111 00 00
Q ss_pred hhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHh
Q 003855 735 VREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKF 783 (791)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~ 783 (791)
...+..+++.+.+++.+||+.||++|||+.|+++.|.......
T Consensus 276 ------~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~ 318 (336)
T 4g3f_A 276 ------REIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEV 318 (336)
T ss_dssp ------GGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred ------hhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhh
Confidence 0112245677889999999999999999999999998876654
No 11
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=1e-51 Score=426.33 Aligned_cols=248 Identities=23% Similarity=0.318 Sum_probs=209.3
Q ss_pred hccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
++|++.+.||+|+||+||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 67999999999999999999964 79999999997643 344577899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~ 656 (791)
||++||+|.+++.+.+. +++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+|+.+....
T Consensus 112 Ey~~gG~L~~~i~~~~~-l~e~~~~~~~~qi~~al~ylH----~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~ 186 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIGS-FDETCTRFYTAEIVSALEYLH----GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPES 186 (311)
T ss_dssp CCCTTEEHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTT
T ss_pred ecCCCCCHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH----HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCC
Confidence 99999999999986544 899999999999999999999 6789999999999999999999999999999876544
Q ss_pred CcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhh
Q 003855 657 DSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVR 736 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 736 (791)
........+||+.|||||++.+..|+.++||||+||++|||+||+.||.+... ..+.+-+.....
T Consensus 187 ~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~~~------------- 251 (311)
T 4aw0_A 187 KQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE--GLIFAKIIKLEY------------- 251 (311)
T ss_dssp TCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTCC-------------
T ss_pred CcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHcCCC-------------
Confidence 44444556899999999999999999999999999999999999999975321 111111111000
Q ss_pred hHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHH
Q 003855 737 EEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAA 773 (791)
Q Consensus 737 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~ 773 (791)
..+..+++++.+++.+||+.||++|||+.|+.
T Consensus 252 -----~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 252 -----DFPEKFFPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp -----CCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred -----CCCcccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence 00113446678999999999999999999864
No 12
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=5.2e-51 Score=428.32 Aligned_cols=250 Identities=22% Similarity=0.337 Sum_probs=202.8
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
.++|++.+.||+|+||+||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEE
Confidence 468999999999999999999975 79999999997543 345678999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 577 EFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+||+|.+++...+ ..+++.++..++.||+.||+||| +++|+||||||+|||+++++.+||+|||+|+.+...
T Consensus 103 Ey~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH----~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 178 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH----DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST 178 (350)
T ss_dssp ECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH----HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred eCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH----HCCeeeccCCHHHEEECCCCCEEEcccccceeecCC
Confidence 9999999999998653 45789999999999999999999 678999999999999999999999999999876432
Q ss_pred CCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 656 EDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
. ......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.... ..+.+......+
T Consensus 179 ~--~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~-~~~~~i~~~~~~------------ 243 (350)
T 4b9d_A 179 V--ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMK-NLVLKIISGSFP------------ 243 (350)
T ss_dssp H--HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHTCCC------------
T ss_pred c--ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH-HHHHHHHcCCCC------------
Confidence 1 1223457999999999999999999999999999999999999999763211 111111111111
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
+.+..++.++.+++.+||+.||++|||+.|+++
T Consensus 244 ------~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 244 ------PVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp ------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ------CCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 011234567889999999999999999999976
No 13
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=2.4e-50 Score=414.51 Aligned_cols=244 Identities=24% Similarity=0.359 Sum_probs=195.9
Q ss_pred ccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeecc----CCeeeEEE
Q 003855 504 NECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSN----PDFKALVL 576 (791)
Q Consensus 504 ~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ 576 (791)
+..+.||+|+||+||+|++. +++.||||++.... ....+.|.+|++++++++|||||++++++.+ +...++||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 56678999999999999975 78999999987543 3445779999999999999999999999864 35679999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCC--eEecCCCCCCeEeC-CCCcEEEeeeccccccC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAP--IIHCDLKPTNILLD-ENMAAHVSDFGISKLLG 653 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~--i~H~dlk~~Nill~-~~~~~kl~Dfgla~~~~ 653 (791)
|||++|+|.+++.+.. .+++..+..++.||+.||+||| +++ |+||||||+|||++ +++.+||+|||+|+...
T Consensus 109 Ey~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~ylH----~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~ 183 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLH----TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR 183 (290)
T ss_dssp ECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----TSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred eCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCC
Confidence 9999999999998654 4899999999999999999999 455 99999999999998 48999999999998643
Q ss_pred CCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchh
Q 003855 654 EGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDAN 733 (791)
Q Consensus 654 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 733 (791)
.. .....+||+.|||||++.+ .|+.++|||||||++|||+||+.||.+.... ..............
T Consensus 184 ~~----~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~----~~~~~~i~~~~~~~----- 249 (290)
T 3fpq_A 184 AS----FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNA----AQIYRRVTSGVKPA----- 249 (290)
T ss_dssp TT----SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH----HHHHHHHTTTCCCG-----
T ss_pred CC----ccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcH----HHHHHHHHcCCCCC-----
Confidence 22 2234579999999998865 6999999999999999999999999753221 11111111100000
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 734 LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+..+++++.+++.+||+.||++|||+.|+++
T Consensus 250 --------~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 250 --------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp --------GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred --------CCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 011123456789999999999999999999975
No 14
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=3.3e-50 Score=431.99 Aligned_cols=249 Identities=22% Similarity=0.321 Sum_probs=209.5
Q ss_pred hccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEecC
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEFM 579 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 579 (791)
+.|+..+.||+|+||.||+|+.. +|+.||||++........+.+.+|+.+|++++|||||++++++.+++..|+|||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence 56999999999999999999975 79999999997665445567889999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCcc
Q 003855 580 PNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDSV 659 (791)
Q Consensus 580 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~~ 659 (791)
+||+|.+++.... +++.++..++.||+.||+||| +++|+||||||+|||++.+|.+||+|||+|+.+.....
T Consensus 231 ~gG~L~~~i~~~~--l~e~~~~~~~~qil~aL~ylH----~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~-- 302 (423)
T 4fie_A 231 EGGALTDIVTHTR--MNEEQIAAVCLAVLQALSVLH----AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP-- 302 (423)
T ss_dssp TTEEHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC--
T ss_pred CCCcHHHHHhccC--CCHHHHHHHHHHHHHHHHHHH----HCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCc--
Confidence 9999999998654 899999999999999999999 67899999999999999999999999999987754322
Q ss_pred eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhhHH
Q 003855 660 TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREEQ 739 (791)
Q Consensus 660 ~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 739 (791)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.. .......+....+...
T Consensus 303 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~--~~~~~~~i~~~~~~~~------------- 367 (423)
T 4fie_A 303 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP--PLKAMKMIRDNLPPRL------------- 367 (423)
T ss_dssp CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC--HHHHHHHHHHSCCCCC-------------
T ss_pred cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC--HHHHHHHHHcCCCCCC-------------
Confidence 2344679999999999999999999999999999999999999997532 1122222222111111
Q ss_pred hhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 740 AFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 740 ~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.....++.++.+++.+||+.||++|||+.|+++
T Consensus 368 --~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 368 --KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp --SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred --cccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 011234567889999999999999999999976
No 15
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=4.4e-50 Score=408.75 Aligned_cols=245 Identities=27% Similarity=0.404 Sum_probs=191.2
Q ss_pred hccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
++|++.+.||+|+||+||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||++++++.+++..++||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 68999999999999999999964 79999999986542 334567899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~ 656 (791)
||+ +|+|.+++.+.+. +++.++..++.||+.||+||| +++|+||||||+|||+++++.+||+|||+|+......
T Consensus 93 Ey~-~g~L~~~l~~~~~-l~e~~~~~~~~qi~~al~ylH----~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~ 166 (275)
T 3hyh_A 93 EYA-GNELFDYIVQRDK-MSEQEARRFFQQIISAVEYCH----RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN 166 (275)
T ss_dssp ECC-CEEHHHHHHHSCS-CCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCTTTEEECTTCCEEECCSSCC-------
T ss_pred eCC-CCCHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH----HCCcccccCChHHeEECCCCCEEEeecCCCeecCCCC
Confidence 999 6899999987654 899999999999999999999 6789999999999999999999999999998764432
Q ss_pred CcceeecccccccccCCCccCCCCC-CccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 657 DSVTQTMTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
.....+||+.|||||++.+..+ +.++||||+||++|||+||+.||.+.. ...+.+-+.....
T Consensus 167 ---~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~--~~~~~~~i~~~~~------------ 229 (275)
T 3hyh_A 167 ---FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES--IPVLFKNISNGVY------------ 229 (275)
T ss_dssp -----------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHTCC------------
T ss_pred ---ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCC--HHHHHHHHHcCCC------------
Confidence 2234579999999999988776 579999999999999999999997521 1111111111100
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+..+++++.+++.+||+.||++|||+.|+++
T Consensus 230 ------~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 230 ------TLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp ------CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ------CCCCCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 001134566789999999999999999999986
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.8e-48 Score=447.09 Aligned_cols=415 Identities=20% Similarity=0.189 Sum_probs=305.8
Q ss_pred CCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcC
Q 003855 5 IPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITN 84 (791)
Q Consensus 5 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 84 (791)
.|..|+++++|++|+|++|+++++.|.+|.++++|++|+|++|++++..|..+.. +++|++|+|++|.|+++.+..|++
T Consensus 49 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~~l~~~~~~~ 127 (606)
T 3t6q_A 49 QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG-PKALKHLFFIQTGISSIDFIPLHN 127 (606)
T ss_dssp CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS-CTTCCEEECTTSCCSCGGGSCCTT
T ss_pred ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc-cccccEeeccccCcccCCcchhcc
Confidence 3566677777777777777777666777777777777777777776444444433 566666666666666555555666
Q ss_pred CCCCCEEeccCccccccccccccccccccccccccccccc--------------------------cCCCcccc------
Q 003855 85 ATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTT--------------------------ESSSADQW------ 132 (791)
Q Consensus 85 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~--------------------------~~~~~~~~------ 132 (791)
+++|++|+|++|++.++....+.++++|+.|++++|+++. ++......
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L 207 (606)
T 3t6q_A 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred CCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccc
Confidence 6666666666666655443333345555555555554443 32211100
Q ss_pred ------------------------------------------------------------c-cccccCCCCCCcEEEccC
Q 003855 133 ------------------------------------------------------------S-FLSSLTNCRNLTILSFGS 151 (791)
Q Consensus 133 ------------------------------------------------------------~-~~~~l~~l~~L~~L~L~~ 151 (791)
. ....|..+++|++|++++
T Consensus 208 ~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 287 (606)
T 3t6q_A 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287 (606)
T ss_dssp ECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT
T ss_pred ccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccC
Confidence 0 011256677777777777
Q ss_pred CCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccC-ccccCCCCCCEEEcccccCccc
Q 003855 152 NPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTIS-PTMGRLKRLQGLSLRNNNLEGS 230 (791)
Q Consensus 152 N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~ 230 (791)
|+++ .+|+.+..+ ++|++|++++|.+.+..|..+.++++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++.
T Consensus 288 n~l~-~lp~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 288 THLS-ELPSGLVGL-STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365 (606)
T ss_dssp SCCS-CCCSSCCSC-TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred CccC-CCChhhccc-ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccc
Confidence 7777 455555544 467778888888777777777778888888888887764443 3477888888888888888765
Q ss_pred C--CccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCc-cccCCCCCCeEEccCCcCcccCCccc
Q 003855 231 I--PYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPS-SLWSLEYILDINLSSNSLNDSLPSNV 307 (791)
Q Consensus 231 ~--~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~i~~~~~~~~ 307 (791)
. +..+..+++|+.|++++|++.+..|..|..+++|++|++++|++.+..+. .+..+++|+.|++++|.+++..|..+
T Consensus 366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 445 (606)
T 3t6q_A 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445 (606)
T ss_dssp EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT
T ss_pred cCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH
Confidence 5 67788888888888888888877888888888999999999988876554 48888999999999999988888888
Q ss_pred ccCCCCCEEecCCcccCC---CCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhccc
Q 003855 308 QKLKVLTVLDLSRNQLSG---DIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQ 384 (791)
Q Consensus 308 ~~l~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 384 (791)
..+++|+.|++++|++.+ ..+..+..+++|+.|++++|++++..|..|+.+++|+.|+|++|++++..|..+..+++
T Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525 (606)
T ss_dssp TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence 899999999999999875 23356888999999999999999888889999999999999999999999999999999
Q ss_pred CceEEccCCCCcccCCCC-CCCcCCccccccCCccccCCC
Q 003855 385 LKQFNVSHNRLEGEIPVK-GSFKNFSVESFFGNYALCGPP 423 (791)
Q Consensus 385 L~~l~l~~N~l~~~~~~~-~~~~~l~~~~~~~n~~~c~~~ 423 (791)
| .|++++|++++.+|.. ..+.+++.+.+.+|++.|+.+
T Consensus 526 L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp C-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred c-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9 9999999999877753 556788899999999998744
No 17
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=3.2e-50 Score=415.53 Aligned_cols=247 Identities=25% Similarity=0.281 Sum_probs=196.0
Q ss_pred hccccccccCCCcceEEEEEEec----CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeE
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS----DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~----~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 574 (791)
++|++.+.||+|+||+||+|+.. +++.||||++.... ......+.+|++++++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 67999999999999999999852 57889999986542 2223467889999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCC
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~ 654 (791)
|||||+||+|.+++.+.+. +++.++..++.||+.||+||| +++|+||||||+|||+++++.+||+|||+|+....
T Consensus 104 vmEy~~gg~L~~~l~~~~~-l~e~~~~~~~~qi~~aL~ylH----~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 178 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKEVM-FTEEDVKFYLAELALALDHLH----SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESID 178 (304)
T ss_dssp EECCCTTCEEHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH----HTTCCCSSCCGGGEEECTTSCEEEESSEEEEC---
T ss_pred EEEcCCCCCHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHH----HCCCcCCCCCHHHeEEcCCCCEEecccccceeccC
Confidence 9999999999999987553 899999999999999999999 67899999999999999999999999999986543
Q ss_pred CCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhh
Q 003855 655 GEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANL 734 (791)
Q Consensus 655 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 734 (791)
... .....+||+.|||||++.+..|+.++||||+||++|||+||+.||.+... ......+.....
T Consensus 179 ~~~--~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~--~~~~~~i~~~~~----------- 243 (304)
T 3ubd_A 179 HEK--KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDR--KETMTMILKAKL----------- 243 (304)
T ss_dssp --C--CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCCC-----------
T ss_pred CCc--cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCH--HHHHHHHHcCCC-----------
Confidence 222 23346799999999999999999999999999999999999999976321 111111111000
Q ss_pred hhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCH-----HHHHH
Q 003855 735 VREEQAFSAKMDCILSIMDLALDCCIESPDMRINV-----TDAAA 774 (791)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~-----~ev~~ 774 (791)
..+..+++++.+++.+||+.||++|||+ +|+++
T Consensus 244 -------~~p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~ 281 (304)
T 3ubd_A 244 -------GMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKR 281 (304)
T ss_dssp -------CCCTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHT
T ss_pred -------CCCCcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHc
Confidence 0112345678899999999999999985 56653
No 18
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=1.8e-48 Score=404.78 Aligned_cols=249 Identities=23% Similarity=0.351 Sum_probs=188.8
Q ss_pred hccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCC--------
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPD-------- 570 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-------- 570 (791)
++|++.+.||+|+||+||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||++++++.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 57999999999999999999975 79999999986543 344567899999999999999999999986543
Q ss_pred ----eeeEEEecCCCCCHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEe
Q 003855 571 ----FKALVLEFMPNGSLEKWLYSHNY--FLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVS 644 (791)
Q Consensus 571 ----~~~lv~e~~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~ 644 (791)
..|+|||||++|+|.+++..... ..++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH----~~~IiHRDlKp~NILl~~~~~vKl~ 160 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH----SKGLMHRDLKPSNIFFTMDDVVKVG 160 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTCCEEEC
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH----HCcCccccCcHHHeEECCCCcEEEc
Confidence 36899999999999999986543 3566778899999999999999 6789999999999999999999999
Q ss_pred eeccccccCCCCCc----------ceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchH
Q 003855 645 DFGISKLLGEGEDS----------VTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSL 714 (791)
Q Consensus 645 Dfgla~~~~~~~~~----------~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~ 714 (791)
|||+|+.+...... ...+..+||+.|||||++.+..|+.++||||+||++|||++ ||..... .
T Consensus 161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~----~ 233 (299)
T 4g31_A 161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQME----R 233 (299)
T ss_dssp CCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHH----H
T ss_pred cCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccH----H
Confidence 99999877543221 12234579999999999999999999999999999999996 7754211 1
Q ss_pred HHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 715 RRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 715 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
...+........ .+......+.+.+++.+||+.||++|||+.|+++
T Consensus 234 ~~~~~~~~~~~~--------------p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 234 VRTLTDVRNLKF--------------PPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp HHHHHHHHTTCC--------------CHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHhcCCC--------------CCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 111111000000 0111233455678999999999999999999986
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-47 Score=443.93 Aligned_cols=408 Identities=19% Similarity=0.164 Sum_probs=307.7
Q ss_pred cCCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCc
Q 003855 4 QIPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSIT 83 (791)
Q Consensus 4 ~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 83 (791)
++|..+. ++|++|+|++|+++++.+..|.++++|++|+|++|++++..|..+. .+++|++|+|++|.+++..|..|+
T Consensus 25 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 25 KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH-GLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCCCCTTSST
T ss_pred cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh-chhhcCEeECCCCcccccChhhcC
Confidence 3555443 6777788888877777777777778888888888777733344443 367788888888877777777777
Q ss_pred CCCCCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhh
Q 003855 84 NATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIG 163 (791)
Q Consensus 84 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 163 (791)
++++|++|+|++|.++++.+..|+++++|++|++++|++..+. ++..|.++++|++|++++|++++..+..+.
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK-------LPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC-------CCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee-------chHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 7778888888888777777677777777888888777776532 234577777777777777777776666555
Q ss_pred hhhhh---hhhhhcccccccccCCc-------------------------------------------------------
Q 003855 164 NFSAS---LQKFYAYECKLKGNIPQ------------------------------------------------------- 185 (791)
Q Consensus 164 ~~~~~---L~~L~l~~n~l~~~~~~------------------------------------------------------- 185 (791)
.+..- +.+|++++|.+++..+.
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~ 254 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGG
T ss_pred hhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHH
Confidence 44310 11333333333322211
Q ss_pred -----------------------------------------------cccCCCCCCEEEccCCccccccC----------
Q 003855 186 -----------------------------------------------EIGNLSGLTLLSLHSNDLNGTIS---------- 208 (791)
Q Consensus 186 -----------------------------------------------~~~~l~~L~~L~L~~N~l~~~~~---------- 208 (791)
.+..+++|+.|++++|.+. .+|
T Consensus 255 ~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L 333 (606)
T 3vq2_A 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSL 333 (606)
T ss_dssp GTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCCCCCCSSCCEE
T ss_pred hhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc-ccccCCCCcccee
Confidence 2333334444444444442 222
Q ss_pred ----------ccccCCCCCCEEEcccccCccc--CCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCC
Q 003855 209 ----------PTMGRLKRLQGLSLRNNNLEGS--IPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLT 276 (791)
Q Consensus 209 ----------~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 276 (791)
..+..+++|++|++++|++++. .|..+..+++|+.|++++|.+++ +|..+.++++|+.|++++|++.
T Consensus 334 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~ 412 (606)
T 3vq2_A 334 TLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLK 412 (606)
T ss_dssp EEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEE
T ss_pred eccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccC
Confidence 1344566777777777777654 36777888888888888888874 5578889999999999999998
Q ss_pred CCCC-ccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCC-CCCcchhccccccccccccccCCCCCCcc
Q 003855 277 SSIP-SSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSG-DIPSTIGALKDLETLSLARNQFQGPIPES 354 (791)
Q Consensus 277 ~~~~-~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 354 (791)
+..+ ..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++ ..|..|..+++|+.|++++|++++..|..
T Consensus 413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh
Confidence 8777 688899999999999999998899999999999999999999987 47888999999999999999999888999
Q ss_pred cCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCCCCCCc-CCccccccCCccccCCC
Q 003855 355 VGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVKGSFK-NFSVESFFGNYALCGPP 423 (791)
Q Consensus 355 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~-~l~~~~~~~n~~~c~~~ 423 (791)
++.+++|+.|+|++|++++.+|..|..+++|+.|++++|+++..++....+. +++.+.+.+|++.|+.+
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999999999999999999999999999999999999999997666655565 58899999999999865
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-47 Score=456.17 Aligned_cols=415 Identities=21% Similarity=0.193 Sum_probs=294.0
Q ss_pred cCCccccCCCCCCeeecCCCccc-ccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCcc-
Q 003855 4 QIPTEIGNLQNLQYLVFAENNLS-GLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHS- 81 (791)
Q Consensus 4 ~lp~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~- 81 (791)
-.|..|+++++|++|+|++|.+. .+.|.+|.++++|++|+|++|.+++..|..+.. +++|++|+|++|.+++..|..
T Consensus 39 i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~~~~~ 117 (844)
T 3j0a_A 39 VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHLFELRLYFCGLSDAVLKDG 117 (844)
T ss_dssp ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS-CSSCCCEECTTCCCSSCCSTTC
T ss_pred cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC-CcccCEeeCcCCCCCcccccCc
Confidence 34556666666666666666332 233556666666666666666666333444443 566666666666666544333
Q ss_pred -CcCCCCCCEEeccCcccccccc-ccccccccccccccccccccccCCCccc------------------cccccccCCC
Q 003855 82 -ITNATKLVALDLGFNSFAGHIL-NTFGNLRHLSLLSQVMNNLTTESSSADQ------------------WSFLSSLTNC 141 (791)
Q Consensus 82 -~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------~~~~~~l~~l 141 (791)
|.++++|++|+|++|.+++..+ ..|+++++|+.|++++|.++........ ...+..+..+
T Consensus 118 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~ 197 (844)
T 3j0a_A 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197 (844)
T ss_dssp CCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSS
T ss_pred cccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhc
Confidence 6666666666666666655443 3566666666666666665543221100 0011223333
Q ss_pred C------CCcEEEccCCCCcccCChhhhhh-------------------------------------hhhhhhhhccccc
Q 003855 142 R------NLTILSFGSNPLGGILPPVIGNF-------------------------------------SASLQKFYAYECK 178 (791)
Q Consensus 142 ~------~L~~L~L~~N~l~~~~~~~~~~~-------------------------------------~~~L~~L~l~~n~ 178 (791)
+ +|+.|++++|.+++..+..+... ..+|+.|++++|.
T Consensus 198 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~ 277 (844)
T 3j0a_A 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277 (844)
T ss_dssp SCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC
T ss_pred CCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc
Confidence 3 38888888888776666555432 1468888888888
Q ss_pred ccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCcc
Q 003855 179 LKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPC 258 (791)
Q Consensus 179 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 258 (791)
+.+..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|.+++..+..
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 357 (844)
T 3j0a_A 278 VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357 (844)
T ss_dssp CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh
Confidence 88888888888899999999999998888888888899999999999888777888888889999999999888777778
Q ss_pred ccCCCCCcEEEcCCCcCCCCCC------------------c----------------------cccCCCCCCeEEccCCc
Q 003855 259 LVSLTSLRELHLGSNKLTSSIP------------------S----------------------SLWSLEYILDINLSSNS 298 (791)
Q Consensus 259 ~~~l~~L~~L~L~~N~l~~~~~------------------~----------------------~~~~l~~L~~L~l~~N~ 298 (791)
|.++++|++|+|++|.+++... . .+..+++|+.|+|++|+
T Consensus 358 ~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp SCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred hcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 8888888888888888764211 0 12255667777777777
Q ss_pred CcccCCc-ccccCCCCCEEecCCcccC-----CCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccC
Q 003855 299 LNDSLPS-NVQKLKVLTVLDLSRNQLS-----GDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLS 372 (791)
Q Consensus 299 i~~~~~~-~~~~l~~L~~L~l~~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 372 (791)
+++..+. .+..+++|+.|+|++|.++ +..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|+++
T Consensus 438 l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 517 (844)
T 3j0a_A 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517 (844)
T ss_dssp CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCS
T ss_pred ccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCC
Confidence 6644332 3455677777777777775 333456788899999999999999888888999999999999999999
Q ss_pred CCCchhhhhcccCceEEccCCCCcccCCCCCCCcCCccccccCCccccCCC
Q 003855 373 GKIPKSLETLSQLKQFNVSHNRLEGEIPVKGSFKNFSVESFFGNYALCGPP 423 (791)
Q Consensus 373 ~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 423 (791)
+..|..+. ++|+.|++++|++++.+|.. +.++..+.+.+|++.|+.+
T Consensus 518 ~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 518 VLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp SCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred ccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 87777766 88999999999999988854 6788999999999999654
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-47 Score=443.03 Aligned_cols=381 Identities=19% Similarity=0.270 Sum_probs=263.7
Q ss_pred CCccCCccccCCCCCCeeecCCCcc-------------------------------------------------------
Q 003855 1 MAGQIPTEIGNLQNLQYLVFAENNL------------------------------------------------------- 25 (791)
Q Consensus 1 ~~g~lp~~~~~l~~L~~L~Ls~n~l------------------------------------------------------- 25 (791)
++|.+|++|++|++|++|+|++|.+
T Consensus 93 l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~ 172 (636)
T 4eco_A 93 ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172 (636)
T ss_dssp CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTS
T ss_pred cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccc
Confidence 4799999999999999999999943
Q ss_pred -----------------------cccCCccccCCCCCcEEeCCCCcCccc-----------------CCchhh--hcCCC
Q 003855 26 -----------------------SGLVPPTIFNISTMRILTLEGNQLSGR-----------------LPSTVG--HLLPN 63 (791)
Q Consensus 26 -----------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~~l~~ 63 (791)
++ +|.+|+++++|++|+|++|++++. +|+.++ . +++
T Consensus 173 ~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~-l~~ 250 (636)
T 4eco_A 173 KSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN-LKD 250 (636)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG-CTT
T ss_pred cccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc-cCC
Confidence 34 566777777777777777777753 777666 5 677
Q ss_pred ccEEEccCCcceecCCccCcCCCCCCEEeccCcc-ccc-ccccccccc------ccccccccccccccccCCCccccccc
Q 003855 64 IESLLLAANNLTGIIPHSITNATKLVALDLGFNS-FAG-HILNTFGNL------RHLSLLSQVMNNLTTESSSADQWSFL 135 (791)
Q Consensus 64 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~~~~~~~~ 135 (791)
|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++ ..|..+..+ ++|+.|++++|+++.++..
T Consensus 251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~------- 323 (636)
T 4eco_A 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE------- 323 (636)
T ss_dssp CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH-------
T ss_pred CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCch-------
Confidence 7777777777777777777777777777777776 766 566666665 7777777777777644320
Q ss_pred cccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCC-CCEEEccCCccccccCccccCC
Q 003855 136 SSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSG-LTLLSLHSNDLNGTISPTMGRL 214 (791)
Q Consensus 136 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l 214 (791)
..+.++++|++|++++|++++.+| .+..+ ++|++|++++|++. .+|..+.++++ |+.|++++|.++ .+|..+..+
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~ 399 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP-AFGSE-IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAK 399 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC-CCEEE-EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTT
T ss_pred hhhccCCCCCEEeCcCCcCccchh-hhCCC-CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhc
Confidence 036677777777777777776666 44443 45777777777777 66666777777 777777777777 555666554
Q ss_pred C--CCCEEEcccccCcccCCcccc-------ccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccC
Q 003855 215 K--RLQGLSLRNNNLEGSIPYDLC-------HLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWS 285 (791)
Q Consensus 215 ~--~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 285 (791)
+ +|++|+|++|.+++..|..+. .+++|+.|+|++|+++...+..+..+++|++|+|++|+++.+.+..+..
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 479 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE
T ss_pred ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc
Confidence 4 677777777777776676666 6667777777777777444444556777777777777777333333332
Q ss_pred CC-------CCCeEEccCCcCcccCCcccc--cCCCCCEEecCCcccCCCCCcchhcccccccccc------ccccCCCC
Q 003855 286 LE-------YILDINLSSNSLNDSLPSNVQ--KLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSL------ARNQFQGP 350 (791)
Q Consensus 286 l~-------~L~~L~l~~N~i~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L------~~N~l~~~ 350 (791)
.. +|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.
T Consensus 480 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 480 ENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp TTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred ccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccccc
Confidence 22 6777777777776 4566665 67777777777777775 6666777777777777 44666667
Q ss_pred CCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccC
Q 003855 351 IPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEI 399 (791)
Q Consensus 351 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~ 399 (791)
+|..++.+++|+.|+|++|++ +.+|..+. ++|+.|++++|++.+..
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred ChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 777777777777777777777 35565544 67777777777766533
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-46 Score=435.39 Aligned_cols=403 Identities=20% Similarity=0.216 Sum_probs=274.7
Q ss_pred cCCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCc
Q 003855 4 QIPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSIT 83 (791)
Q Consensus 4 ~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 83 (791)
++|..+.. ++++|+|++|+|+++.|.+|.++++|++|+|++|++++..|..+.. +++|++|+|++|.+++..|..|+
T Consensus 26 ~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 26 EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCSEECTTTTS
T ss_pred cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccC-ccccCeeeCCCCcccccChhhhc
Confidence 56766654 7999999999999999999999999999999999999555666655 89999999999999999999999
Q ss_pred CCCCCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhh
Q 003855 84 NATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIG 163 (791)
Q Consensus 84 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 163 (791)
++++|++|+|++|+++++.+..|.++++|++|++++|+++.++... +..+++|++|++++|.+++..+..+.
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~ 174 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK--------GFPTEKLKVLDFQNNAIHYLSKEDMS 174 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT--------TCCCTTCCEEECCSSCCCEECHHHHH
T ss_pred ccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc--------ccCCcccCEEEcccCcccccChhhhh
Confidence 9999999999999999988899999999999999999999864322 44466666666666666655554444
Q ss_pred hhhh----------------------------------------------------------------------------
Q 003855 164 NFSA---------------------------------------------------------------------------- 167 (791)
Q Consensus 164 ~~~~---------------------------------------------------------------------------- 167 (791)
.+..
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~ 254 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS
T ss_pred hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC
Confidence 4321
Q ss_pred hhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEec
Q 003855 168 SLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLT 247 (791)
Q Consensus 168 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 247 (791)
+|+.|++++|.+.+..+..|.++++|++|++++|+++ .+|..+..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 2334444444444444444555666666666666666 445556666666666666666665555566666666666666
Q ss_pred CCccCCCCC-ccccCCCCCcEEEcCCCcCCCCC--CccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccC
Q 003855 248 GNKLSGHIP-PCLVSLTSLRELHLGSNKLTSSI--PSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLS 324 (791)
Q Consensus 248 ~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~ 324 (791)
+|.+.+.+| ..+..+++|++|++++|++.+.. +..+..+++|++|++++|.+++..|..|..+++|+.|++++|++.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 666553332 33566666666666666665444 455666666666666666666655666666666666666666666
Q ss_pred CCCCc-chhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCC---CchhhhhcccCceEEccCCCCcccCC
Q 003855 325 GDIPS-TIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGK---IPKSLETLSQLKQFNVSHNRLEGEIP 400 (791)
Q Consensus 325 ~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---~~~~~~~l~~L~~l~l~~N~l~~~~~ 400 (791)
+..+. .+..+++|+.|++++|.+++..|..++.+++|+.|++++|++++. .+..+..+++|+.|++++|++++.+|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 54433 356666666666666666655566666666666666666666542 22456666666666666666666554
Q ss_pred C-CCCCcCCccccccCCcc
Q 003855 401 V-KGSFKNFSVESFFGNYA 418 (791)
Q Consensus 401 ~-~~~~~~l~~~~~~~n~~ 418 (791)
. ...+++++.+.+.+|..
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp TTTTTCTTCCEEECCSSCC
T ss_pred hhhccccCCCEEECCCCcc
Confidence 3 24455566666666543
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.7e-46 Score=437.57 Aligned_cols=415 Identities=23% Similarity=0.260 Sum_probs=258.9
Q ss_pred ccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCC
Q 003855 7 TEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNAT 86 (791)
Q Consensus 7 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 86 (791)
..|+++++|++|+|++|+++++.|.+|.++++|++|+|++|+++ .+|...+..+++|++|+|++|.++++.|..|++++
T Consensus 43 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 43 ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121 (680)
T ss_dssp GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence 34555666666666666665555555555566666666666555 45543333355555555555555555455555555
Q ss_pred CCCEEeccCcccccccccccccccccccccccccccccc--------------------------CCCccc-c-------
Q 003855 87 KLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTE--------------------------SSSADQ-W------- 132 (791)
Q Consensus 87 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------------~~~~~~-~------- 132 (791)
+|++|+|++|.+++..+..|.++++|+.|++++|+++.. +..... .
T Consensus 122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201 (680)
T ss_dssp TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhh
Confidence 555555555555555555555555555555555444332 221000 0
Q ss_pred -----------------------------------ccccccCCCC--CCcEEEccCCCCcccCChhhhhhhhhhhhhhcc
Q 003855 133 -----------------------------------SFLSSLTNCR--NLTILSFGSNPLGGILPPVIGNFSASLQKFYAY 175 (791)
Q Consensus 133 -----------------------------------~~~~~l~~l~--~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~ 175 (791)
..+..|.+++ +|++|++++|++++..|..+..+ ++|++|+++
T Consensus 202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~ 280 (680)
T 1ziw_A 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLE 280 (680)
T ss_dssp CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTC-TTCCEEECC
T ss_pred ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCc-ccccEeeCC
Confidence 0011222332 37777777777766655555444 346666666
Q ss_pred cccccccCCc---------------------------------cccCCCCCCEEEccCCccccccCccccCCCCCCEEEc
Q 003855 176 ECKLKGNIPQ---------------------------------EIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSL 222 (791)
Q Consensus 176 ~n~l~~~~~~---------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 222 (791)
+|.+.+..|. .|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 6666554443 2333445555555556666555555555554444444
Q ss_pred c----------------------------cccCcccCCccccccCCCceEEecCCccCCCCC-ccccCCCCCcEEEcCCC
Q 003855 223 R----------------------------NNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIP-PCLVSLTSLRELHLGSN 273 (791)
Q Consensus 223 ~----------------------------~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N 273 (791)
+ +|++++..|..|..+++|+.|+|++|.+++.+| ..|.++++|++|++++|
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 3 334444445556666666666666666654333 45555566666666555
Q ss_pred cCC--------------------------CCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCC
Q 003855 274 KLT--------------------------SSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDI 327 (791)
Q Consensus 274 ~l~--------------------------~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 327 (791)
++. +..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++..
T Consensus 441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520 (680)
T ss_dssp SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGG
T ss_pred CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccc
Confidence 543 345666777788888888888888777777888888888888888887532
Q ss_pred C--------cchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccC
Q 003855 328 P--------STIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEI 399 (791)
Q Consensus 328 ~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~ 399 (791)
+ ..|..+++|+.|+|++|+++...+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++++.+
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 1 23677888888888888888544556888999999999999999777777888999999999999998877
Q ss_pred CCC-C-CCcCCccccccCCccccCCC
Q 003855 400 PVK-G-SFKNFSVESFFGNYALCGPP 423 (791)
Q Consensus 400 ~~~-~-~~~~l~~~~~~~n~~~c~~~ 423 (791)
+.. . .+.+++.+.+.+|+|.|+.+
T Consensus 601 ~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 601 KKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp HHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred hhHhcccccccCEEEccCCCcccCCc
Confidence 653 2 46788899999999999865
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.1e-46 Score=432.84 Aligned_cols=395 Identities=18% Similarity=0.246 Sum_probs=336.5
Q ss_pred CCCCeeecCCCcccccCCccccCCCCCcEEeCCCCc--------------------------------------------
Q 003855 13 QNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQ-------------------------------------------- 48 (791)
Q Consensus 13 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------------------------------------- 48 (791)
..++.|+|++|++.|.+|.+|++|++|++|+|++|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 479999999999999999999999999999999984
Q ss_pred ----------------------------------CcccCCchhhhcCCCccEEEccCCcceec-----------------
Q 003855 49 ----------------------------------LSGRLPSTVGHLLPNIESLLLAANNLTGI----------------- 77 (791)
Q Consensus 49 ----------------------------------l~~~~p~~~~~~l~~L~~L~L~~N~l~~~----------------- 77 (791)
+++ +|+.+.. +++|++|+|++|.+++.
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhccc
Confidence 444 7887776 89999999999999975
Q ss_pred CCccCc--CCCCCCEEeccCcccccccccccccccccccccccccc-ccc--cCCCccccccccccCCCCCCcEEEccCC
Q 003855 78 IPHSIT--NATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNN-LTT--ESSSADQWSFLSSLTNCRNLTILSFGSN 152 (791)
Q Consensus 78 ~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~-l~~--~~~~~~~~~~~~~l~~l~~L~~L~L~~N 152 (791)
+|..++ ++++|++|+|++|.+.+..|..|.++++|+.|++++|+ ++. ++.... -+..+..+++|++|++++|
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~---~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ---ALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH---HHHHSGGGGTCCEEECCSS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH---hhhccccCCCCCEEECCCC
Confidence 889988 99999999999999999999999999999999999998 764 332110 1112334589999999999
Q ss_pred CCcccCCh--hhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCC-CCEEEcccccCcc
Q 003855 153 PLGGILPP--VIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKR-LQGLSLRNNNLEG 229 (791)
Q Consensus 153 ~l~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~ 229 (791)
+++ .+|. .+..+ ++|++|++++|++.+.+| .|.++++|+.|+|++|+++ .+|..|..+++ |++|+|++|.++
T Consensus 316 ~l~-~ip~~~~l~~l-~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 316 NLK-TFPVETSLQKM-KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp CCS-SCCCHHHHTTC-TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred cCC-ccCchhhhccC-CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 999 6776 67665 579999999999998888 8999999999999999999 77788999999 999999999999
Q ss_pred cCCccccccC--CCceEEecCCccCCCCCcccc-------CCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCc
Q 003855 230 SIPYDLCHLK--LMFGIRLTGNKLSGHIPPCLV-------SLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLN 300 (791)
Q Consensus 230 ~~~~~~~~l~--~L~~L~L~~N~i~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~ 300 (791)
.+|..+..++ +|+.|++++|.+++..|..+. .+++|++|+|++|++++..+..+..+++|++|+|++|.++
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 7888877755 899999999999988888888 8889999999999999655555667999999999999998
Q ss_pred ccCCcccccCC-------CCCEEecCCcccCCCCCcchh--ccccccccccccccCCCCCCcccCCCCCCcEEEc-----
Q 003855 301 DSLPSNVQKLK-------VLTVLDLSRNQLSGDIPSTIG--ALKDLETLSLARNQFQGPIPESVGSLISLESLDL----- 366 (791)
Q Consensus 301 ~~~~~~~~~l~-------~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l----- 366 (791)
...+..+.... +|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD 548 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBC
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcc
Confidence 44444444333 8999999999999 7888886 89999999999999996 8899999999999999
Q ss_pred -cCCccCCCCchhhhhcccCceEEccCCCCcccCCCCCCCcCCccccccCCccccC
Q 003855 367 -SGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVKGSFKNFSVESFFGNYALCG 421 (791)
Q Consensus 367 -~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~ 421 (791)
++|++.+.+|..+..+++|+.|++++|++ +.+|.. ..++++.+.+.+|++.|-
T Consensus 549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISI 602 (636)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEE
T ss_pred cccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCccc
Confidence 56888889999999999999999999999 556654 337899999999998874
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6e-46 Score=430.78 Aligned_cols=401 Identities=19% Similarity=0.206 Sum_probs=327.5
Q ss_pred ccCCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccC
Q 003855 3 GQIPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSI 82 (791)
Q Consensus 3 g~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 82 (791)
+-.|..|+++++|++|+|++|+++++.|.+|.++++|++|+|++|++++..|..+.. +++|++|+|++|.+++..+..|
T Consensus 46 ~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~~~~~ 124 (606)
T 3vq2_A 46 ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENLVAVETKLASLESFPI 124 (606)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT-CTTCCEEECTTSCCCCSSSSCC
T ss_pred EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC-cccCCEEEccCCcccccccccc
Confidence 445568999999999999999999998999999999999999999998444666655 8999999999999998887889
Q ss_pred cCCCCCCEEeccCcccccc-ccccccccccccccccccccccccCCCccc-c------------------ccccccCCCC
Q 003855 83 TNATKLVALDLGFNSFAGH-ILNTFGNLRHLSLLSQVMNNLTTESSSADQ-W------------------SFLSSLTNCR 142 (791)
Q Consensus 83 ~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~------------------~~~~~l~~l~ 142 (791)
+++++|++|+|++|++.+. .+..|+++++|+.|++++|+++.++..... . ..++......
T Consensus 125 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~ 204 (606)
T 3vq2_A 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI 204 (606)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC
T ss_pred CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc
Confidence 9999999999999999864 488899999999999999998876543200 0 0111111222
Q ss_pred CCcEEEccCCCCcc-cCCh-------------------------------------------------------------
Q 003855 143 NLTILSFGSNPLGG-ILPP------------------------------------------------------------- 160 (791)
Q Consensus 143 ~L~~L~L~~N~l~~-~~~~------------------------------------------------------------- 160 (791)
+|+.|++++|.+++ ..|.
T Consensus 205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l 284 (606)
T 3vq2_A 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284 (606)
T ss_dssp EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGG
T ss_pred eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccC
Confidence 55555555554431 0000
Q ss_pred -----------------hhhhhhhhhhhhhcccccccccCC--------------------ccccCCCCCCEEEccCCcc
Q 003855 161 -----------------VIGNFSASLQKFYAYECKLKGNIP--------------------QEIGNLSGLTLLSLHSNDL 203 (791)
Q Consensus 161 -----------------~~~~~~~~L~~L~l~~n~l~~~~~--------------------~~~~~l~~L~~L~L~~N~l 203 (791)
.+.. ..+|++|++++|.+ +.+| ..+..+++|++|++++|.+
T Consensus 285 ~~L~~L~l~~~~~~~l~~l~~-~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l 362 (606)
T 3vq2_A 285 ANVSAMSLAGVSIKYLEDVPK-HFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNAL 362 (606)
T ss_dssp TTCSEEEEESCCCCCCCCCCT-TCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCE
T ss_pred CCCCEEEecCccchhhhhccc-cccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCcc
Confidence 0000 01345555555555 2333 1456778888999999999
Q ss_pred cccc--CccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCC-ccccCCCCCcEEEcCCCcCCCCCC
Q 003855 204 NGTI--SPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIP-PCLVSLTSLRELHLGSNKLTSSIP 280 (791)
Q Consensus 204 ~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~ 280 (791)
++.. +..+..+++|++|+|++|.+++ +|..+..+++|+.|++++|++.+..| ..+.++++|++|++++|++.+..|
T Consensus 363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 441 (606)
T 3vq2_A 363 SFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441 (606)
T ss_dssp EEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred CCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch
Confidence 8663 7889999999999999999984 66899999999999999999998877 689999999999999999999899
Q ss_pred ccccCCCCCCeEEccCCcCcc-cCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCC
Q 003855 281 SSLWSLEYILDINLSSNSLND-SLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLI 359 (791)
Q Consensus 281 ~~~~~l~~L~~L~l~~N~i~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 359 (791)
..+..+++|++|++++|.+++ ..|..+..+++|+.|++++|++++..|..|..+++|+.|++++|++++.+|..++.++
T Consensus 442 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521 (606)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence 999999999999999999987 4788999999999999999999988899999999999999999999988899999999
Q ss_pred CCcEEEccCCccCCCCchhhhhcc-cCceEEccCCCCcccCCCCCCCcCC
Q 003855 360 SLESLDLSGNNLSGKIPKSLETLS-QLKQFNVSHNRLEGEIPVKGSFKNF 408 (791)
Q Consensus 360 ~L~~L~l~~N~l~~~~~~~~~~l~-~L~~l~l~~N~l~~~~~~~~~~~~l 408 (791)
+|+.|+|++|+++ .+|..+..++ +|+.|++++|++.|.++..+...++
T Consensus 522 ~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 522 SLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWV 570 (606)
T ss_dssp TCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred cCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHH
Confidence 9999999999999 6777799997 5999999999999988865434444
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.8e-45 Score=429.02 Aligned_cols=404 Identities=22% Similarity=0.251 Sum_probs=274.0
Q ss_pred cCCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCc
Q 003855 4 QIPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSIT 83 (791)
Q Consensus 4 ~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 83 (791)
+||..+. ++|++|+|++|+++++.+..|.++++|++|+|++|.+++..|..+.. +++|++|+|++|.++++.+..|+
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH-CTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhc-ccCcCEEECCCCccCccChhhhc
Confidence 4777665 79999999999999988889999999999999999999555655555 89999999999999977777899
Q ss_pred CCCCCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhh
Q 003855 84 NATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIG 163 (791)
Q Consensus 84 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 163 (791)
++++|++|+|++|+++++.+..|.++++|++|++++|.++...... +.++++|++|++++|.+++..+..+.
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~ 166 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT--------QVQLENLQELLLSNNKIQALKSEELD 166 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS--------SSCCTTCCEEECCSSCCCCBCHHHHG
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh--------hcccccCCEEEccCCcccccCHHHhh
Confidence 9999999999999999998899999999999999999998765432 56666667777666666655444433
Q ss_pred hh-hhhhhhhhcccccccccCC---------------------------------------------------ccccCCC
Q 003855 164 NF-SASLQKFYAYECKLKGNIP---------------------------------------------------QEIGNLS 191 (791)
Q Consensus 164 ~~-~~~L~~L~l~~n~l~~~~~---------------------------------------------------~~~~~l~ 191 (791)
.. ..+|++|++++|.+.+..| ..|.+++
T Consensus 167 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~ 246 (680)
T 1ziw_A 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246 (680)
T ss_dssp GGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG
T ss_pred ccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC
Confidence 21 1345555555554444433 3333332
Q ss_pred --CCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCC-----CCCc----ccc
Q 003855 192 --GLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSG-----HIPP----CLV 260 (791)
Q Consensus 192 --~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-----~~~~----~~~ 260 (791)
+|+.|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|++++|...+ .+|. .|.
T Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcc
Confidence 26666666666666666666666666666666666665555444444444444443332211 0111 334
Q ss_pred CCCCCcEEEcCCCcCCCCCCccccCCCC----------------------------CCeEEccCCcCcccCCcccccCCC
Q 003855 261 SLTSLRELHLGSNKLTSSIPSSLWSLEY----------------------------ILDINLSSNSLNDSLPSNVQKLKV 312 (791)
Q Consensus 261 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~----------------------------L~~L~l~~N~i~~~~~~~~~~l~~ 312 (791)
.+++|++|++++|++.+..+..|..+++ |+.|++++|++++..|..|..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 4444555555555555444444444433 444444555566666677777788
Q ss_pred CCEEecCCcccCCCCC-cchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccC--CCCchhhhhcccCceEE
Q 003855 313 LTVLDLSRNQLSGDIP-STIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLS--GKIPKSLETLSQLKQFN 389 (791)
Q Consensus 313 L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~l~ 389 (791)
|+.|++++|.+.+.+| ..|..+++|++|++++|++.+..+..|..+++|+.|++++|.++ +.+|..|..+++|+.|+
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~ 486 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEE
Confidence 8888888888765444 56777778888888888777666667777777777777777665 45666677777777777
Q ss_pred ccCCCCcccCCC-CCCCcCCccccccCCcc
Q 003855 390 VSHNRLEGEIPV-KGSFKNFSVESFFGNYA 418 (791)
Q Consensus 390 l~~N~l~~~~~~-~~~~~~l~~~~~~~n~~ 418 (791)
+++|++++.++. ...+.+++.+.+.+|..
T Consensus 487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 487 LSNNNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence 777777765554 24456666666666654
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-45 Score=424.27 Aligned_cols=404 Identities=21% Similarity=0.225 Sum_probs=298.1
Q ss_pred CCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcC
Q 003855 5 IPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITN 84 (791)
Q Consensus 5 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 84 (791)
+|..+. +++++|+|++|+++++.+.+|.++++|++|+|++|+++ .++...+..+++|++|+|++|.++++.|..|.+
T Consensus 22 ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 454442 46777777777777776777777777777777777776 444443344677777777777777666677777
Q ss_pred CCCCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhh
Q 003855 85 ATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGN 164 (791)
Q Consensus 85 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 164 (791)
+++|++|+|++|+++.+....|+++++|++|++++|.++.+. ++..|.++++|++|++++|++++..+..+..
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-------lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 171 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-------LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC-------CCGGGGGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred ccccccccccccccccCCCccccccccccEEecCCCccceec-------ChhhhcccCCCCEEeCcCCccceecHHHccc
Confidence 777777777777777666656777777777777777776532 2344666777777777777776655555544
Q ss_pred hhhhh----hhhhccccccccc----------------------------------------------------------
Q 003855 165 FSASL----QKFYAYECKLKGN---------------------------------------------------------- 182 (791)
Q Consensus 165 ~~~~L----~~L~l~~n~l~~~---------------------------------------------------------- 182 (791)
+. +| ..|++++|.+.+.
T Consensus 172 l~-~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 250 (570)
T 2z63_A 172 LH-QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250 (570)
T ss_dssp HH-TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTT
T ss_pred hh-ccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhh
Confidence 32 23 3444444444333
Q ss_pred -----------------------CCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCcc-c---
Q 003855 183 -----------------------IPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYD-L--- 235 (791)
Q Consensus 183 -----------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~--- 235 (791)
.|..|..+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|.. +
T Consensus 251 ~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L 327 (570)
T 2z63_A 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSL 327 (570)
T ss_dssp TGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSC
T ss_pred hccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCccccccc
Confidence 3344555667777777777776 455566655 6666666666665 23321 1
Q ss_pred ----------------cccCCCceEEecCCccCCCC--CccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCC
Q 003855 236 ----------------CHLKLMFGIRLTGNKLSGHI--PPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSN 297 (791)
Q Consensus 236 ----------------~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 297 (791)
..+++|+.|++++|.+++.. +..+.++++|++|++++|++.+..+. +..+++|+.|++++|
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n 406 (570)
T 2z63_A 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS 406 (570)
T ss_dssp CEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTS
T ss_pred CEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCC
Confidence 45677888888888887543 66788888999999999988865444 888999999999999
Q ss_pred cCcccCC-cccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCC-CCCCcccCCCCCCcEEEccCCccCCCC
Q 003855 298 SLNDSLP-SNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQ-GPIPESVGSLISLESLDLSGNNLSGKI 375 (791)
Q Consensus 298 ~i~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~ 375 (791)
.+.+..+ ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|+++ +.+|..+..+++|+.|+|++|++++..
T Consensus 407 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 486 (570)
T 2z63_A 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486 (570)
T ss_dssp EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCC
Confidence 9987665 56889999999999999999888889999999999999999997 568889999999999999999999888
Q ss_pred chhhhhcccCceEEccCCCCcccCCC-CCCCcCCccccccCCccccCCC
Q 003855 376 PKSLETLSQLKQFNVSHNRLEGEIPV-KGSFKNFSVESFFGNYALCGPP 423 (791)
Q Consensus 376 ~~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~~~~~~n~~~c~~~ 423 (791)
|..|..+++|+.|++++|++++.+|. ...+++++.+.+.+|++.|+.+
T Consensus 487 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 99999999999999999999998775 3567888999999999998755
No 28
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.8e-46 Score=400.21 Aligned_cols=267 Identities=24% Similarity=0.263 Sum_probs=201.2
Q ss_pred hccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeecc------CCe
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSN------PDF 571 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------~~~ 571 (791)
++|++.+.||+|+||+||+|+.. +|+.||||++.... ....+.+.+|+++|++++|||||++++++.. .+.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 67999999999999999999975 79999999996543 3445678899999999999999999998753 467
Q ss_pred eeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccc
Q 003855 572 KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKL 651 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~ 651 (791)
.|+|||||+ |+|.+++.+.+ .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+.
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~~-~l~~~~~~~~~~qil~al~ylH----~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~ 207 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSSQ-PLTLEHVRYFLYQLLRGLKYMH----SAQVIHRDLKPSNLLVNENCELKIGDFGMARG 207 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSSS-CCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEEeCCC-CCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCcCcCCCcCccccccCCCCCEEEeecceeee
Confidence 899999995 68999998654 4999999999999999999999 67899999999999999999999999999987
Q ss_pred cCCCCC--cceeecccccccccCCCccCCC-CCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC--h
Q 003855 652 LGEGED--SVTQTMTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG--L 726 (791)
Q Consensus 652 ~~~~~~--~~~~~~~~g~~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~--~ 726 (791)
+..... .......+||+.|||||++.+. .++.++||||+||++|||++|+.||.+.... ..+........... .
T Consensus 208 ~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~-~~l~~I~~~~g~p~~~~ 286 (398)
T 4b99_A 208 LCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYV-HQLQLIMMVLGTPSPAV 286 (398)
T ss_dssp C-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHH-HHHHHHHHHHCCCCGGG
T ss_pred cccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHH-HHHHHHHHhcCCCChHH
Confidence 644321 2223456899999999987764 5799999999999999999999999763221 11111111111100 0
Q ss_pred hhhcch-hhhhhHHh---------hHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 727 TEVVDA-NLVREEQA---------FSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 727 ~~~~d~-~~~~~~~~---------~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
...+.. ........ ......++.++.+|+.+||+.||++|||+.|+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 344 (398)
T 4b99_A 287 IQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR 344 (398)
T ss_dssp TC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred hhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 000000 00000000 0001123567889999999999999999999876
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.5e-45 Score=430.27 Aligned_cols=353 Identities=18% Similarity=0.237 Sum_probs=222.9
Q ss_pred CCchhhhcCCCccEEEccCCccee-----------------cCCccCc--CCCCCCEEeccCcccccccccccccccccc
Q 003855 53 LPSTVGHLLPNIESLLLAANNLTG-----------------IIPHSIT--NATKLVALDLGFNSFAGHILNTFGNLRHLS 113 (791)
Q Consensus 53 ~p~~~~~~l~~L~~L~L~~N~l~~-----------------~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 113 (791)
+|..+.. +++|++|+|++|.|++ .+|..++ ++++|++|+|++|.+.+..|..|.++++|+
T Consensus 440 IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 6665555 6677777777777775 2666655 777777777777776666666777777777
Q ss_pred cccccccc-ccc--cCCCccccccccccCCCCCCcEEEccCCCCcccCCh--hhhhhhhhhhhhhcccccccccCCcccc
Q 003855 114 LLSQVMNN-LTT--ESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPP--VIGNFSASLQKFYAYECKLKGNIPQEIG 188 (791)
Q Consensus 114 ~L~l~~n~-l~~--~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 188 (791)
.|++++|+ ++. ++..... +...+..+++|+.|+|++|+++ .+|. .+..+ ++|++|++++|+++ .+| .|.
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~--L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L-~~L~~L~Ls~N~l~-~lp-~~~ 592 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTR--LADDEDTGPKIQIFYMGYNNLE-EFPASASLQKM-VKLGLLDCVHNKVR-HLE-AFG 592 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHH--HHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTC-TTCCEEECTTSCCC-BCC-CCC
T ss_pred EEECcCCCCcccccchHHHHh--hhhcccccCCccEEEeeCCcCC-ccCChhhhhcC-CCCCEEECCCCCcc-cch-hhc
Confidence 77777776 553 3221110 0013445567777777777776 5555 55554 35777777777776 555 667
Q ss_pred CCCCCCEEEccCCccccccCccccCCCC-CCEEEcccccCcccCCccccccCC--CceEEecCCccCCCCCccc---c--
Q 003855 189 NLSGLTLLSLHSNDLNGTISPTMGRLKR-LQGLSLRNNNLEGSIPYDLCHLKL--MFGIRLTGNKLSGHIPPCL---V-- 260 (791)
Q Consensus 189 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~N~i~~~~~~~~---~-- 260 (791)
++++|+.|+|++|+++ .+|..+..+++ |++|+|++|+|+ .+|..+..++. |+.|+|++|++.+.+|... .
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~ 670 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTC
T ss_pred CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccc
Confidence 7777777777777776 55666666766 777777777776 56666655543 7777777777765544322 1
Q ss_pred CCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCccccc--------CCCCCEEecCCcccCCCCCcchh
Q 003855 261 SLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQK--------LKVLTVLDLSRNQLSGDIPSTIG 332 (791)
Q Consensus 261 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~--------l~~L~~L~l~~N~l~~~~~~~~~ 332 (791)
.+++|+.|+|++|+++...+..+..+++|+.|+|++|.|+ .+|..+.. +++|+.|+|++|+++ .+|..+.
T Consensus 671 ~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~ 748 (876)
T 4ecn_A 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR 748 (876)
T ss_dssp CCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGS
T ss_pred cCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhh
Confidence 2346777777777776333333346677777777777776 33333222 226777777777776 5666665
Q ss_pred --ccccccccccccccCCCCCCcccCCCCCCcEEEccC------CccCCCCchhhhhcccCceEEccCCCCcccCCCCCC
Q 003855 333 --ALKDLETLSLARNQFQGPIPESVGSLISLESLDLSG------NNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVKGS 404 (791)
Q Consensus 333 --~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~------N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~ 404 (791)
.+++|+.|+|++|+|++ +|..+..+++|+.|+|++ |++.+.+|..|..+++|+.|+|++|++ +.+|.. .
T Consensus 749 ~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l 825 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-L 825 (876)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-C
T ss_pred hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-h
Confidence 67777777777777774 566666777777777755 666667777777777777777777777 444443 2
Q ss_pred CcCCccccccCCccc
Q 003855 405 FKNFSVESFFGNYAL 419 (791)
Q Consensus 405 ~~~l~~~~~~~n~~~ 419 (791)
.++|+.+.+.+|+..
T Consensus 826 ~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 826 TPQLYILDIADNPNI 840 (876)
T ss_dssp CSSSCEEECCSCTTC
T ss_pred cCCCCEEECCCCCCC
Confidence 356666667777653
No 30
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=1.6e-45 Score=393.31 Aligned_cols=266 Identities=19% Similarity=0.262 Sum_probs=199.1
Q ss_pred HhhccccccccCCCcceEEEEEEec----CCcEEEEEEeehhhhHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCeee
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS----DGTDVAIKIFNLQLERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDFKA 573 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~ 573 (791)
..++|++.+.||+|+||+||+|+.+ +++.||||++..... ...+.+|+++++.+ +||||+++++++.+.+..+
T Consensus 19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~--~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~ 96 (361)
T 4f9c_A 19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSH--PIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVV 96 (361)
T ss_dssp GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSC--HHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEE
T ss_pred ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccC--HHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEE
Confidence 4578999999999999999999853 467899998865432 34677899999998 6999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCC-CcEEEeeecccccc
Q 003855 574 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDEN-MAAHVSDFGISKLL 652 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~-~~~kl~Dfgla~~~ 652 (791)
+||||+++|+|.+++. .+++.++..++.|++.||+||| +.+|+||||||+|||++.+ +.+||+|||+|+..
T Consensus 97 lvmE~~~g~~L~~~~~----~l~~~~~~~~~~qll~al~ylH----~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~ 168 (361)
T 4f9c_A 97 IAMPYLEHESFLDILN----SLSFQEVREYMLNLFKALKRIH----QFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGT 168 (361)
T ss_dssp EEEECCCCCCHHHHHT----TCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred EEEeCCCcccHHHHHc----CCCHHHHHHHHHHHHHHHHHHH----HCCeEeCcCCHHHeEEeCCCCeEEECcCCCCccc
Confidence 9999999999999984 2889999999999999999999 6899999999999999876 89999999999865
Q ss_pred CCCCCc--------------------------ceeecccccccccCCCccCCC-CCCccccHHhHHHHHHHHHhCCCCCC
Q 003855 653 GEGEDS--------------------------VTQTMTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRPTD 705 (791)
Q Consensus 653 ~~~~~~--------------------------~~~~~~~g~~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~ 705 (791)
...... ......+||++|||||++.+. .|+.++||||+||++|||+||+.||.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~ 248 (361)
T 4f9c_A 169 HDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFY 248 (361)
T ss_dssp TTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSS
T ss_pred CCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCC
Confidence 432211 112335799999999988765 58999999999999999999999996
Q ss_pred ccccCcchHHHHHHHh-----------c----------C-CChhhhcch-------------hhhhhHHhhHHHHHHHHH
Q 003855 706 EMFTGEMSLRRWVKES-----------L----------P-HGLTEVVDA-------------NLVREEQAFSAKMDCILS 750 (791)
Q Consensus 706 ~~~~~~~~~~~~~~~~-----------~----------~-~~~~~~~d~-------------~~~~~~~~~~~~~~~~~~ 750 (791)
........+.....-. . + ......... ...............+++
T Consensus 249 ~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~ 328 (361)
T 4f9c_A 249 KASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDE 328 (361)
T ss_dssp CCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CTTCCHH
T ss_pred CCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHH
Confidence 4322211111111100 0 0 000000000 000000001112234567
Q ss_pred HHHHHhhccccCCCCCCCHHHHHH
Q 003855 751 IMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 751 l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
+.+++.+||+.||++|||+.|+++
T Consensus 329 a~DLl~~lL~~dP~~R~ta~eaL~ 352 (361)
T 4f9c_A 329 AYDLLDKLLDLNPASRITAEEALL 352 (361)
T ss_dssp HHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred HHHHHHHHCcCChhHCcCHHHHhc
Confidence 889999999999999999999875
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=434.22 Aligned_cols=408 Identities=20% Similarity=0.205 Sum_probs=323.9
Q ss_pred cCCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCc
Q 003855 4 QIPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSIT 83 (791)
Q Consensus 4 ~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 83 (791)
.||. -.++|++|+|++|+|+++.|..|.++++|++|+|++|.+.+.++...+..+++|++|+|++|.|++..|..|+
T Consensus 18 ~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 18 QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 4665 4589999999999999999999999999999999999766688555555699999999999999999999999
Q ss_pred CCCCCCEEeccCcccccccccc--ccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChh
Q 003855 84 NATKLVALDLGFNSFAGHILNT--FGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPV 161 (791)
Q Consensus 84 ~l~~L~~L~L~~N~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 161 (791)
++++|++|+|++|.+++..+.. |.++++|+.|++++|.++.... .+.|.++++|++|+|++|.+++..+..
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-------~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-------HPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC-------CGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc-------chhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 9999999999999999755544 9999999999999999987642 235899999999999999999988888
Q ss_pred hhhhh-hhhhhhhcccccccccCCccccC---------------------------------------------------
Q 003855 162 IGNFS-ASLQKFYAYECKLKGNIPQEIGN--------------------------------------------------- 189 (791)
Q Consensus 162 ~~~~~-~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------------------- 189 (791)
+..+. .+|+.|++++|.+.+..|..+..
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~ 247 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS
T ss_pred cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc
Confidence 87652 34444554444444333322211
Q ss_pred -----------------CCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccC
Q 003855 190 -----------------LSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLS 252 (791)
Q Consensus 190 -----------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 252 (791)
.++|+.|+|++|.+.+..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|.++
T Consensus 248 ~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS
T ss_pred cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC
Confidence 156777888888887777778888888888888888888777888888888888888888888
Q ss_pred CCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCC----------------------------
Q 003855 253 GHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLP---------------------------- 304 (791)
Q Consensus 253 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~---------------------------- 304 (791)
+..|..|.++++|+.|++++|++.+..+..|..+++|+.|+|++|.+++...
T Consensus 328 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ 407 (844)
T 3j0a_A 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407 (844)
T ss_dssp CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEE
T ss_pred ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceee
Confidence 7778888888888888888888887777788888888888888888764211
Q ss_pred ------------cccccCCCCCEEecCCcccCCCCCc-chhccccccccccccccCC-----CCCCcccCCCCCCcEEEc
Q 003855 305 ------------SNVQKLKVLTVLDLSRNQLSGDIPS-TIGALKDLETLSLARNQFQ-----GPIPESVGSLISLESLDL 366 (791)
Q Consensus 305 ------------~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~l 366 (791)
..+..+++|+.|+|++|++++..+. .+..+++|+.|+|++|.++ +..+..|..+++|+.|+|
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEEC
Confidence 0123556667777777776643332 3455677777788888776 344566888999999999
Q ss_pred cCCccCCCCchhhhhcccCceEEccCCCCcccCCCCCCCcCCccccccCCccccCC
Q 003855 367 SGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVKGSFKNFSVESFFGNYALCGP 422 (791)
Q Consensus 367 ~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~ 422 (791)
++|++++..|..|..+++|+.|+|++|+|++.++.... .+++.+.+.+|....-.
T Consensus 488 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~ 542 (844)
T 3j0a_A 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPN 542 (844)
T ss_dssp CHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCC
T ss_pred CCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCC
Confidence 99999999999999999999999999999987776543 78888888888765443
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.6e-44 Score=421.70 Aligned_cols=354 Identities=17% Similarity=0.212 Sum_probs=224.4
Q ss_pred CCccccCCCCCcEEeCCCCcCcc-----------------cCCchhh-hcCCCccEEEccCCcceecCCccCcCCCCCCE
Q 003855 29 VPPTIFNISTMRILTLEGNQLSG-----------------RLPSTVG-HLLPNIESLLLAANNLTGIIPHSITNATKLVA 90 (791)
Q Consensus 29 ~~~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 90 (791)
+|..|.++++|++|+|++|+|++ .+|+.+. ..+++|++|+|++|.+.+.+|..|+++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 56667777777777777777764 2666653 22667777777777766667777777777777
Q ss_pred EeccCcc-ccc-cccccccccc-------cccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChh
Q 003855 91 LDLGFNS-FAG-HILNTFGNLR-------HLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPV 161 (791)
Q Consensus 91 L~L~~N~-i~~-~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 161 (791)
|+|++|+ +++ ..|..|.+++ +|+.|++++|+++.++. ...+.++++|+.|+|++|+++ .+| .
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~-------~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA-------SASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC-------HHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC-------hhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 7777776 665 5555555554 77777777777764331 003666777777777777776 455 4
Q ss_pred hhhhhhhhhhhhcccccccccCCccccCCCC-CCEEEccCCccccccCccccCCCC--CCEEEcccccCcccCCccc---
Q 003855 162 IGNFSASLQKFYAYECKLKGNIPQEIGNLSG-LTLLSLHSNDLNGTISPTMGRLKR--LQGLSLRNNNLEGSIPYDL--- 235 (791)
Q Consensus 162 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~~~~~~--- 235 (791)
+..+ ++|+.|++++|++. .+|..+.++++ |+.|+|++|.++ .+|..+..++. |+.|+|++|++.+.+|...
T Consensus 591 ~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 591 FGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 4333 45777777777776 66666766766 777777777776 45566655543 7777777777765544322
Q ss_pred c--ccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccC-------CCCCCeEEccCCcCcccCCcc
Q 003855 236 C--HLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWS-------LEYILDINLSSNSLNDSLPSN 306 (791)
Q Consensus 236 ~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-------l~~L~~L~l~~N~i~~~~~~~ 306 (791)
. .+++|+.|+|++|.++...+..+..+++|+.|+|++|+|..+.+..+.. +++|+.|+|++|+++ .+|..
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~ 746 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHH
Confidence 1 2346777777777777333333346677777777777776332222222 226777777777776 45666
Q ss_pred cc--cCCCCCEEecCCcccCCCCCcchhcccccccccccc------ccCCCCCCcccCCCCCCcEEEccCCccCCCCchh
Q 003855 307 VQ--KLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLAR------NQFQGPIPESVGSLISLESLDLSGNNLSGKIPKS 378 (791)
Q Consensus 307 ~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~------N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 378 (791)
+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++ +.+|..
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 65 67777777777777764 566666777777777755 566666677777777777777777777 466655
Q ss_pred hhhcccCceEEccCCCCcccC
Q 003855 379 LETLSQLKQFNVSHNRLEGEI 399 (791)
Q Consensus 379 ~~~l~~L~~l~l~~N~l~~~~ 399 (791)
+. ++|+.|+|++|++....
T Consensus 825 l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 825 LT--PQLYILDIADNPNISID 843 (876)
T ss_dssp CC--SSSCEEECCSCTTCEEE
T ss_pred hc--CCCCEEECCCCCCCccC
Confidence 44 46777777777765543
No 33
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=2.3e-44 Score=403.32 Aligned_cols=248 Identities=20% Similarity=0.284 Sum_probs=200.1
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHH---HHHHHHHHhccCCccceeeeeeccCCee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSF---DSECEVLRNVRHRNLIKILSSCSNPDFK 572 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~---~~e~~~l~~l~h~niv~l~~~~~~~~~~ 572 (791)
.++|++.+.||+|+||.||+|+.. +|+.||||++.+.. ....... ..++.+++.++|||||++++++.+++..
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 478999999999999999999975 79999999997543 1222223 3345666777999999999999999999
Q ss_pred eEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccccc
Q 003855 573 ALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLL 652 (791)
Q Consensus 573 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~ 652 (791)
|+||||++||+|.+++...+. +++..+..++.||+.||+||| +.+||||||||+|||++.+|.+||+|||+|+.+
T Consensus 268 ylVmEy~~GGdL~~~l~~~~~-l~E~~a~~y~~qIl~aL~yLH----~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~ 342 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQHGV-FSEADMRFYAAEIILGLEHMH----NRFVVYRDLKPANILLDEHGHVRISDLGLACDF 342 (689)
T ss_dssp EEEECCCCSCBHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH----TTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEEecCCCCcHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHH----HCCccccCCchHHeEEeCCCCEEecccceeeec
Confidence 999999999999999987654 899999999999999999999 789999999999999999999999999999876
Q ss_pred CCCCCcceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCcc-hHHHHHHHhcCCChhhhc
Q 003855 653 GEGEDSVTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEM-SLRRWVKESLPHGLTEVV 730 (791)
Q Consensus 653 ~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 730 (791)
.... ....+||+.|||||++.. ..|+.++||||+||++|||++|+.||.+...... .+.+.+.....
T Consensus 343 ~~~~----~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~------- 411 (689)
T 3v5w_A 343 SKKK----PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAV------- 411 (689)
T ss_dssp SSCC----CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCC-------
T ss_pred CCCC----CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCC-------
Confidence 5432 234589999999999864 5799999999999999999999999976432221 11111111000
Q ss_pred chhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCC-----HHHHHH
Q 003855 731 DANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRIN-----VTDAAA 774 (791)
Q Consensus 731 d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt-----~~ev~~ 774 (791)
..+..++.++.+++.+||+.||++|++ +.||++
T Consensus 412 -----------~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 412 -----------ELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp -----------CCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred -----------CCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence 011234566789999999999999998 677754
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-44 Score=413.47 Aligned_cols=408 Identities=19% Similarity=0.233 Sum_probs=309.0
Q ss_pred CCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcC
Q 003855 5 IPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITN 84 (791)
Q Consensus 5 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 84 (791)
.|..|.++++|++|+|++|+++++.|.+|.++++|++|+|++|+++ .+|...+..+++|++|+|++|.++++.+..|++
T Consensus 44 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 122 (570)
T 2z63_A 44 GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122 (570)
T ss_dssp CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTT
T ss_pred ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCccccc
Confidence 4557888888899999888888888888888888888888888887 555444444788888888888888766667888
Q ss_pred CCCCCEEeccCcccccc-ccccccccccccccccccccccccCCCccc-c------------------------------
Q 003855 85 ATKLVALDLGFNSFAGH-ILNTFGNLRHLSLLSQVMNNLTTESSSADQ-W------------------------------ 132 (791)
Q Consensus 85 l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~------------------------------ 132 (791)
+++|++|+|++|.++++ .+..|+++++|+.|++++|+++.++..... .
T Consensus 123 l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L 202 (570)
T 2z63_A 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202 (570)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred cccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcc
Confidence 88888888888888764 477788888888888888887765432100 0
Q ss_pred ----------------------------------------------------------------------ccccccCCCC
Q 003855 133 ----------------------------------------------------------------------SFLSSLTNCR 142 (791)
Q Consensus 133 ----------------------------------------------------------------------~~~~~l~~l~ 142 (791)
..+..+..++
T Consensus 203 ~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~ 282 (570)
T 2z63_A 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282 (570)
T ss_dssp EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT
T ss_pred eeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC
Confidence 0001122233
Q ss_pred CCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEc
Q 003855 143 NLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSL 222 (791)
Q Consensus 143 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 222 (791)
+|+.|++++|.++ .+|+.+... +|++|++.+|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++
T Consensus 283 ~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l 354 (570)
T 2z63_A 283 NVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDL 354 (570)
T ss_dssp TCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEEC
T ss_pred cccEEEecCccch-hhhhhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeC
Confidence 4444444444443 223333322 3444444444444 2222 2344555555555555433332 67899999999
Q ss_pred ccccCcccC--CccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCC-ccccCCCCCCeEEccCCcC
Q 003855 223 RNNNLEGSI--PYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIP-SSLWSLEYILDINLSSNSL 299 (791)
Q Consensus 223 ~~N~l~~~~--~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~i 299 (791)
++|++++.. |..+..+++|+.|++++|.+++..+. +..+++|++|++++|++.+..+ ..+..+++|++|++++|.+
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 433 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC
T ss_pred cCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc
Confidence 999998654 67889999999999999999965444 9999999999999999987766 5788999999999999999
Q ss_pred cccCCcccccCCCCCEEecCCcccC-CCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchh
Q 003855 300 NDSLPSNVQKLKVLTVLDLSRNQLS-GDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKS 378 (791)
Q Consensus 300 ~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 378 (791)
.+..|..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.|+|++|++++..|..
T Consensus 434 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 513 (570)
T 2z63_A 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513 (570)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHH
Confidence 9999999999999999999999997 578899999999999999999999888999999999999999999999988899
Q ss_pred hhhcccCceEEccCCCCcccCCCCCCC-cCCcc--ccccCCccccCCC
Q 003855 379 LETLSQLKQFNVSHNRLEGEIPVKGSF-KNFSV--ESFFGNYALCGPP 423 (791)
Q Consensus 379 ~~~l~~L~~l~l~~N~l~~~~~~~~~~-~~l~~--~~~~~n~~~c~~~ 423 (791)
|..+++|+.|++++|+++|.+|....+ .+++. ..+.+.+ .|..+
T Consensus 514 ~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~~~ 560 (570)
T 2z63_A 514 FDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGS 560 (570)
T ss_dssp TTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBTTT
T ss_pred hhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCch-hhCCC
Confidence 999999999999999999999876444 33322 2344444 66544
No 35
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=2.1e-44 Score=408.23 Aligned_cols=252 Identities=23% Similarity=0.292 Sum_probs=210.7
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEec
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEF 578 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 578 (791)
.++|++.+.||+|+||.||+|+.+ +|+.||+|++........+.+.+|+.+|+.++|||||++++++.+....++||||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~ 235 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 235 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence 468999999999999999999975 7999999999766555567889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCC--CcEEEeeeccccccCCCC
Q 003855 579 MPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDEN--MAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 579 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~--~~~kl~Dfgla~~~~~~~ 656 (791)
|+||+|.+++......+++.++..++.||+.||+||| +++|+||||||+|||++.+ +.+||+|||+|+.+....
T Consensus 236 ~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH----~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~ 311 (573)
T 3uto_A 236 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH----ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ 311 (573)
T ss_dssp CCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTS
T ss_pred cCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH----HCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCC
Confidence 9999999999876666999999999999999999999 6789999999999999854 899999999999875432
Q ss_pred CcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhh
Q 003855 657 DSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVR 736 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 736 (791)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.... .....+...... ..
T Consensus 312 ---~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~--~~~~~i~~~~~~-~~--------- 376 (573)
T 3uto_A 312 ---SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD--ETLRNVKSCDWN-MD--------- 376 (573)
T ss_dssp ---EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH--HHHHHHHTTCCC-CC---------
T ss_pred ---ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH--HHHHHHHhCCCC-CC---------
Confidence 233457999999999999999999999999999999999999999763221 111111111000 00
Q ss_pred hHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 737 EEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 737 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
......++.++.+|+.+||+.||++|||+.|+++
T Consensus 377 ----~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 377 ----DSAFSGISEDGKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp ----SGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred ----cccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 0111234566789999999999999999999986
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-44 Score=410.43 Aligned_cols=395 Identities=22% Similarity=0.285 Sum_probs=304.5
Q ss_pred cCCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCc
Q 003855 4 QIPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSIT 83 (791)
Q Consensus 4 ~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 83 (791)
.||..+. ++|++|+|++|+++++.|.+|.++++|++|+|++|++++..|..+.. +++|++|+|++|+|+++ |..
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~l-p~~-- 87 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSHNKLVKI-SCH-- 87 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECCSSCCCEE-ECC--
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecCCCceeec-Ccc--
Confidence 4777776 89999999999999888889999999999999999998444656555 88999999999999954 444
Q ss_pred CCCCCCEEeccCcccccc-ccccccccccccccccccccccccCCCccccccccccCCCCCC--cEEEccCCCC--cccC
Q 003855 84 NATKLVALDLGFNSFAGH-ILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNL--TILSFGSNPL--GGIL 158 (791)
Q Consensus 84 ~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L--~~L~L~~N~l--~~~~ 158 (791)
.+++|++|+|++|+++++ .+..|+++++|+.|++++|+++.. .+..+++| +.|++++|.+ .+..
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-----------SVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-----------GGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-----------hccccccceeeEEEeecccccccccc
Confidence 789999999999999874 568899999999999999998752 25566666 9999999988 6677
Q ss_pred Chhhhhhh-------------------------hhhhhhhccccc-------ccccCCccccCCC---------------
Q 003855 159 PPVIGNFS-------------------------ASLQKFYAYECK-------LKGNIPQEIGNLS--------------- 191 (791)
Q Consensus 159 ~~~~~~~~-------------------------~~L~~L~l~~n~-------l~~~~~~~~~~l~--------------- 191 (791)
|..+..+. .+|+.|++++|. +.+.+| .+..++
T Consensus 157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHH
T ss_pred cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHH
Confidence 76666532 345555555554 333332 344444
Q ss_pred ------------CCCEEEccCCccccccCccc-----cCCCCCCEEEcccccCcccCC-cccccc---CCCceEEecCCc
Q 003855 192 ------------GLTLLSLHSNDLNGTISPTM-----GRLKRLQGLSLRNNNLEGSIP-YDLCHL---KLMFGIRLTGNK 250 (791)
Q Consensus 192 ------------~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~-~~~~~l---~~L~~L~L~~N~ 250 (791)
+|+.|++++|++++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.
T Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc
Confidence 44445555555554445444 5555555555555555 223 333333 456677777776
Q ss_pred cCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcc--cCCcccccCCCCCEEecCCcccCCCCC
Q 003855 251 LSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLND--SLPSNVQKLKVLTVLDLSRNQLSGDIP 328 (791)
Q Consensus 251 i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~ 328 (791)
+.... .+..+++|++|++++|++++..|..+..+++|++|++++|++++ .+|..+..+++|+.|++++|++++.+|
T Consensus 314 l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~ 391 (520)
T 2z7x_B 314 MVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391 (520)
T ss_dssp CCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred ccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc
Confidence 65322 12688999999999999998889999999999999999999986 456779999999999999999997466
Q ss_pred c-chhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCC-CCCCc
Q 003855 329 S-TIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPV-KGSFK 406 (791)
Q Consensus 329 ~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~ 406 (791)
. .+..+++|+.|++++|++++..|..+. ++|+.|+|++|+++ .+|..+..+++|+.|++++|+++..++. ...+.
T Consensus 392 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 468 (520)
T 2z7x_B 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT 468 (520)
T ss_dssp GCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCC
Confidence 5 488899999999999999877777665 79999999999999 7888888999999999999999976654 56678
Q ss_pred CCccccccCCccccCCC
Q 003855 407 NFSVESFFGNYALCGPP 423 (791)
Q Consensus 407 ~l~~~~~~~n~~~c~~~ 423 (791)
+++.+.+.+|++.|+.+
T Consensus 469 ~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 469 SLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCCEEECCSSCBCCCHH
T ss_pred cccEEECcCCCCcccCC
Confidence 89999999999998743
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.3e-44 Score=409.37 Aligned_cols=397 Identities=18% Similarity=0.220 Sum_probs=257.5
Q ss_pred cCCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCc
Q 003855 4 QIPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSIT 83 (791)
Q Consensus 4 ~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 83 (791)
+||+.+. ++|++|+|++|+++++.|.+|.++++|++|+|++|++++..|..+.. +++|++|+|++|.+++..|..|+
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS-LGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTSCCCSCCHHHHT
T ss_pred cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccc-cccCCEEECCCCccCccCHHHhc
Confidence 4566553 67888888888887777777888888888888888887433344443 77888888888888776666677
Q ss_pred CCCCCCEEeccCcccccc-cccccccccccccccccccc-ccccCCCccccccccccCCCCCCcEEEccCCCCcccCChh
Q 003855 84 NATKLVALDLGFNSFAGH-ILNTFGNLRHLSLLSQVMNN-LTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPV 161 (791)
Q Consensus 84 ~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 161 (791)
++++|++|+|++|++++. .+..|.++++|+.|++++|+ +..++. ..|.++++|++|++++|++++..|..
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR--------IDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--------TTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH--------hhhhcccccCeeeccCCcccccChhh
Confidence 788888888888877754 34567777888888888777 444432 23677777777777777777766666
Q ss_pred hhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCcccccc---------------------------Cc----c
Q 003855 162 IGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTI---------------------------SP----T 210 (791)
Q Consensus 162 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------------~~----~ 210 (791)
+..+ .+|++|+++.|.+.......+..+++|++|++++|++++.. +. .
T Consensus 168 l~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 168 LKSI-RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp TTTC-SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred hhcc-ccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence 6554 24555555555544222222234555555555555554321 00 0
Q ss_pred ccC-----------------------------------------------------------CCCCCEEEcccccCcccC
Q 003855 211 MGR-----------------------------------------------------------LKRLQGLSLRNNNLEGSI 231 (791)
Q Consensus 211 ~~~-----------------------------------------------------------l~~L~~L~L~~N~l~~~~ 231 (791)
+.. +++|++|++++|.++ .+
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~i 325 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LV 325 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CC
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cC
Confidence 011 124455555555554 34
Q ss_pred Cccc-cccCCCceEEecCCccCCCCC---ccccCCCCCcEEEcCCCcCCCCCC--ccccCCCCCCeEEccCCcCcccCCc
Q 003855 232 PYDL-CHLKLMFGIRLTGNKLSGHIP---PCLVSLTSLRELHLGSNKLTSSIP--SSLWSLEYILDINLSSNSLNDSLPS 305 (791)
Q Consensus 232 ~~~~-~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~i~~~~~~ 305 (791)
|..+ ..+++|+.|++++|++++..| ..++.+++|++|+|++|++++..+ ..+..+++|++|++++|+++ .+|.
T Consensus 326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 404 (549)
T 2z81_A 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD 404 (549)
T ss_dssp CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCS
T ss_pred CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCCh
Confidence 4433 456666666666666665442 235566666666666666664322 34666666777777777666 4555
Q ss_pred ccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccC
Q 003855 306 NVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQL 385 (791)
Q Consensus 306 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 385 (791)
.+..+++|+.|++++|+++ .+|..+ .++|+.|++++|++++. +..+++|+.|+|++|+++ .+|. ...+++|
T Consensus 405 ~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L 475 (549)
T 2z81_A 405 SCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVL 475 (549)
T ss_dssp CCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTC
T ss_pred hhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccC
Confidence 6666666777777777666 333322 24677777777777643 247889999999999998 5665 4678999
Q ss_pred ceEEccCCCCcccCCC-CCCCcCCccccccCCccccCCC
Q 003855 386 KQFNVSHNRLEGEIPV-KGSFKNFSVESFFGNYALCGPP 423 (791)
Q Consensus 386 ~~l~l~~N~l~~~~~~-~~~~~~l~~~~~~~n~~~c~~~ 423 (791)
+.|++++|++++.+|. ...+.+++.+.+.+|++.|+.+
T Consensus 476 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999999999988876 4667888889999999988643
No 38
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=2.2e-44 Score=382.68 Aligned_cols=282 Identities=34% Similarity=0.576 Sum_probs=231.5
Q ss_pred CChhHHHHHhhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCC
Q 003855 491 TPYLDIQRATDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPD 570 (791)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~ 570 (791)
.++.++...+++|+..+.||+|+||.||+|+.++++.||||++........+.+.+|+.++++++||||+++++++.+.+
T Consensus 29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 108 (321)
T 2qkw_B 29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERN 108 (321)
T ss_dssp -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT
T ss_pred ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC
Confidence 34445556778999999999999999999998889999999987666566778999999999999999999999999999
Q ss_pred eeeEEEecCCCCCHHHHHhhCC---CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeec
Q 003855 571 FKALVLEFMPNGSLEKWLYSHN---YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFG 647 (791)
Q Consensus 571 ~~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfg 647 (791)
..++||||+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||
T Consensus 109 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH----~~~ivH~dlkp~Nil~~~~~~~kl~Dfg 184 (321)
T 2qkw_B 109 EMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH----TRAIIHRDVKSINILLDENFVPKITDFG 184 (321)
T ss_dssp CCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCSTTEEECTTCCEEECCCT
T ss_pred eEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhc----CCCeecCCCCHHHEEECCCCCEEEeecc
Confidence 9999999999999999997543 34899999999999999999999 6789999999999999999999999999
Q ss_pred cccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCc-chHHHHHHHhcC-CC
Q 003855 648 ISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE-MSLRRWVKESLP-HG 725 (791)
Q Consensus 648 la~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~-~~~~~~~~~~~~-~~ 725 (791)
+++...............||+.|+|||.+.+..++.++|||||||++|||+||+.||....+.+ .....|...... ..
T Consensus 185 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (321)
T 2qkw_B 185 ISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQ 264 (321)
T ss_dssp TCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTC
T ss_pred cccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhcccccc
Confidence 9987654333333344568999999999988899999999999999999999999997654432 234444333222 22
Q ss_pred hhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHH
Q 003855 726 LTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKV 781 (791)
Q Consensus 726 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~ 781 (791)
....+++..... ...+++..+.+++.+||+.||++|||+.|+++.|+.+.+
T Consensus 265 ~~~~~~~~~~~~-----~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~ 315 (321)
T 2qkw_B 265 LEQIVDPNLADK-----IRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR 315 (321)
T ss_dssp CCSSSSSSCTTC-----SCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHhcChhhccc-----cCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence 333333332211 123567889999999999999999999999999998865
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.9e-43 Score=393.42 Aligned_cols=360 Identities=19% Similarity=0.200 Sum_probs=261.3
Q ss_pred CCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEe
Q 003855 13 QNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALD 92 (791)
Q Consensus 13 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 92 (791)
++|++|+|++|+++++.|..|.++++|++|+|++|.+.+.+|...+..+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56677777777776666667777777777777777765555554444466777777777777766666777777777777
Q ss_pred ccCccccccccc--cccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhh
Q 003855 93 LGFNSFAGHILN--TFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQ 170 (791)
Q Consensus 93 L~~N~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 170 (791)
|++|++++..+. .|.++++|+.|++++|+++.+.... .+.++++|++|++++|++++..+..+..+.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~---- 178 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS-------FFLNMRRFHVLDLTFNKVKSICEEDLLNFQ---- 178 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG-------GGGGCTTCCEEECTTCCBSCCCTTTSGGGT----
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCccc-------ccCCCCcccEEeCCCCcccccChhhhhccc----
Confidence 777776653333 3666666666666666666542211 155666666666666666655554443321
Q ss_pred hhhcccccccccCCccccCCCCCCEEEccCCccccccCcc--------ccCCCCCCEEEcccccCcccCCcccccc---C
Q 003855 171 KFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPT--------MGRLKRLQGLSLRNNNLEGSIPYDLCHL---K 239 (791)
Q Consensus 171 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~ 239 (791)
..+|+.|++++|.+.+..+.. +..+++|++|++++|++++..|..+... +
T Consensus 179 -------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 239 (455)
T 3v47_A 179 -------------------GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239 (455)
T ss_dssp -------------------TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTC
T ss_pred -------------------cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccc
Confidence 145666666666665444332 2245566666666666666555555443 5
Q ss_pred CCceEEecCCccCC----------CCCccccC--CCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCccc
Q 003855 240 LMFGIRLTGNKLSG----------HIPPCLVS--LTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNV 307 (791)
Q Consensus 240 ~L~~L~L~~N~i~~----------~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~ 307 (791)
+|+.|++++|.+.+ ..+..+.. .++|+.|++++|++.+..|..+..+++|++|++++|.+++..|..|
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 319 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF 319 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh
Confidence 66666666664432 22222322 3689999999999998889999999999999999999998888899
Q ss_pred ccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCce
Q 003855 308 QKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQ 387 (791)
Q Consensus 308 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 387 (791)
..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+++|+.
T Consensus 320 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence 99999999999999999888889999999999999999999888999999999999999999999877788899999999
Q ss_pred EEccCCCCcccCCCC
Q 003855 388 FNVSHNRLEGEIPVK 402 (791)
Q Consensus 388 l~l~~N~l~~~~~~~ 402 (791)
|++++|+++|.+|..
T Consensus 400 L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 400 IWLHTNPWDCSCPRI 414 (455)
T ss_dssp EECCSSCBCCCTTTT
T ss_pred EEccCCCcccCCCcc
Confidence 999999999999854
No 40
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.9e-43 Score=371.13 Aligned_cols=265 Identities=24% Similarity=0.391 Sum_probs=218.8
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEec
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEF 578 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 578 (791)
.++|+..+.||+|+||.||+|+.. +++.||+|++........+.+.+|++++++++||||+++++++.++...++||||
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 88 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY 88 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence 468999999999999999999975 6899999998766666778899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCc
Q 003855 579 MPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDS 658 (791)
Q Consensus 579 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~ 658 (791)
+++|+|.+++......+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++........
T Consensus 89 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH----~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~ 164 (310)
T 3s95_A 89 IKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLH----SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQ 164 (310)
T ss_dssp CTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC-----
T ss_pred cCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH----hCCccCCCCCcCeEEECCCCCEEEeecccceeccccccc
Confidence 9999999999987677999999999999999999999 678999999999999999999999999999876543221
Q ss_pred c------------eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCCh
Q 003855 659 V------------TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGL 726 (791)
Q Consensus 659 ~------------~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 726 (791)
. ......||+.|+|||.+.+..++.++||||||+++|||++|..|+........... ...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~--------~~~ 236 (310)
T 3s95_A 165 PEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFG--------LNV 236 (310)
T ss_dssp ---------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSS--------BCH
T ss_pred ccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHh--------hhh
Confidence 1 11134699999999999999999999999999999999999999875332211100 000
Q ss_pred hhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcc
Q 003855 727 TEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLD 785 (791)
Q Consensus 727 ~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~ 785 (791)
.... ....+..++..+.+++.+||+.||++|||+.|+++.|++++.....
T Consensus 237 ~~~~---------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~~ 286 (310)
T 3s95_A 237 RGFL---------DRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLAG 286 (310)
T ss_dssp HHHH---------HHTCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred hccc---------cccCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhccC
Confidence 0000 0011224556788999999999999999999999999999876543
No 41
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=3.8e-43 Score=379.69 Aligned_cols=263 Identities=24% Similarity=0.421 Sum_probs=216.7
Q ss_pred hhccccccccCCCcceEEEEEEec--------CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhc-cCCccceeeeeeccC
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS--------DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNV-RHRNLIKILSSCSNP 569 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~ 569 (791)
.++|++.+.||+|+||.||+|+.. ++..||||++.... ....+.+.+|+.+++++ +||||+++++++.+.
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 478999999999999999999852 35679999997653 34567899999999999 899999999999999
Q ss_pred CeeeEEEecCCCCCHHHHHhhCC---------------CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeE
Q 003855 570 DFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNIL 634 (791)
Q Consensus 570 ~~~~lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nil 634 (791)
+..++||||+++|+|.+++.... ..+++..+..++.||+.||+||| +.+|+||||||+||+
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivHrDlkp~NIl 235 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA----SQKCIHRDLAARNVL 235 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEE
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH----hCCeeccccchhhEE
Confidence 99999999999999999998643 24789999999999999999999 678999999999999
Q ss_pred eCCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcch
Q 003855 635 LDENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMS 713 (791)
Q Consensus 635 l~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~ 713 (791)
++.++.+||+|||+|+...............+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+.... .
T Consensus 236 l~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~--~ 313 (370)
T 2psq_A 236 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE--E 313 (370)
T ss_dssp ECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--G
T ss_pred ECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHH--H
Confidence 99999999999999987755443333334457889999999988999999999999999999999 99999763221 2
Q ss_pred HHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcc
Q 003855 714 LRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLD 785 (791)
Q Consensus 714 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~ 785 (791)
....+..... ...+..++..+.+++.+||+.||++||++.|+++.|+++.....+
T Consensus 314 ~~~~~~~~~~-----------------~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~~~ 368 (370)
T 2psq_A 314 LFKLLKEGHR-----------------MDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTTN 368 (370)
T ss_dssp HHHHHHTTCC-----------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCCC-----------------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHhcc
Confidence 2222211110 011124556788999999999999999999999999999776544
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.5e-43 Score=400.95 Aligned_cols=379 Identities=20% Similarity=0.233 Sum_probs=300.5
Q ss_pred CccCCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceec-CCc
Q 003855 2 AGQIPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGI-IPH 80 (791)
Q Consensus 2 ~g~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~-~~~ 80 (791)
++..|..|+++++|++|+|++|+++++.|++|.++++|++|+|++|+++ .+|...+..+++|++|+|++|.+++. .|.
T Consensus 39 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 117 (549)
T 2z81_A 39 TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117 (549)
T ss_dssp CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSC
T ss_pred CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhh
Confidence 3456788999999999999999999999999999999999999999998 66665444589999999999999964 567
Q ss_pred cCcCCCCCCEEeccCcc-ccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCC
Q 003855 81 SITNATKLVALDLGFNS-FAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILP 159 (791)
Q Consensus 81 ~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 159 (791)
.|+++++|++|+|++|. +..+.+..|.++++|+.|++++|+++.... ..+..+++|+.|++++|.+. ..|
T Consensus 118 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~l~~l~~L~~L~l~~n~~~-~~~ 188 (549)
T 2z81_A 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS--------QSLKSIRDIHHLTLHLSESA-FLL 188 (549)
T ss_dssp SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT--------TTTTTCSEEEEEEEECSBST-THH
T ss_pred hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh--------hhhhccccCceEecccCccc-ccc
Confidence 89999999999999998 666666789999999999999999987533 22444444444444444443 122
Q ss_pred hhhhhhhhhhhhhhcccccccccC---------------------------C----------------------------
Q 003855 160 PVIGNFSASLQKFYAYECKLKGNI---------------------------P---------------------------- 184 (791)
Q Consensus 160 ~~~~~~~~~L~~L~l~~n~l~~~~---------------------------~---------------------------- 184 (791)
+.+....++|++|++++|++.+.. +
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~ 268 (549)
T 2z81_A 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268 (549)
T ss_dssp HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC
T ss_pred hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc
Confidence 222222233444444444443310 0
Q ss_pred ---------c--------------------------cccCCCCCCEEEccCCccccccCccc-cCCCCCCEEEcccccCc
Q 003855 185 ---------Q--------------------------EIGNLSGLTLLSLHSNDLNGTISPTM-GRLKRLQGLSLRNNNLE 228 (791)
Q Consensus 185 ---------~--------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~ 228 (791)
. .+....+|+.|++++|.++ .+|..+ ..+++|++|+|++|+++
T Consensus 269 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~ 347 (549)
T 2z81_A 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV 347 (549)
T ss_dssp CCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCC
T ss_pred ccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccc
Confidence 0 0111246777888888887 445554 67999999999999999
Q ss_pred ccCC---ccccccCCCceEEecCCccCCCCC--ccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccC
Q 003855 229 GSIP---YDLCHLKLMFGIRLTGNKLSGHIP--PCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSL 303 (791)
Q Consensus 229 ~~~~---~~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~ 303 (791)
+..| ..+..+++|+.|+|++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++. +
T Consensus 348 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l 425 (549)
T 2z81_A 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-V 425 (549)
T ss_dssp HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-C
T ss_pred cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-c
Confidence 7664 347889999999999999985432 56899999999999999998 678889999999999999999974 4
Q ss_pred CcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcc
Q 003855 304 PSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLS 383 (791)
Q Consensus 304 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 383 (791)
|..+ .++|+.|++++|++++.. ..+++|++|+|++|+|+ .+|. ...+++|+.|+|++|++++.+|..+..++
T Consensus 426 ~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 497 (549)
T 2z81_A 426 KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLT 497 (549)
T ss_dssp CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCT
T ss_pred cchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCc
Confidence 4433 268999999999999643 57899999999999999 6776 56789999999999999999999999999
Q ss_pred cCceEEccCCCCcccCCC
Q 003855 384 QLKQFNVSHNRLEGEIPV 401 (791)
Q Consensus 384 ~L~~l~l~~N~l~~~~~~ 401 (791)
+|+.|++++|+++|.+|.
T Consensus 498 ~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 498 SLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp TCCEEECCSSCBCCCHHH
T ss_pred ccCEEEecCCCccCCCcc
Confidence 999999999999998874
No 43
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=2e-43 Score=375.17 Aligned_cols=267 Identities=22% Similarity=0.329 Sum_probs=211.9
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCC----eeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPD----FKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv 575 (791)
.++|++.+.||+|+||.||+|+.. ++.||||++...... ......|+.++++++||||+++++++.+.. ..++|
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~~-~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv 100 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDKQ-SWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI 100 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCchH-HHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence 468999999999999999999885 799999999765433 345566899999999999999999997644 36999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCC----------CeEecCCCCCCeEeCCCCcEEEee
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSA----------PIIHCDLKPTNILLDENMAAHVSD 645 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~----------~i~H~dlk~~Nill~~~~~~kl~D 645 (791)
|||+++|+|.+++.... +++..+..++.|++.||+||| +. +|+||||||+||+++.++.+||+|
T Consensus 101 ~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~al~~LH----~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~D 174 (322)
T 3soc_A 101 TAFHEKGSLSDFLKANV--VSWNELCHIAETMARGLAYLH----EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIAD 174 (322)
T ss_dssp EECCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHT----CCEEEETTEEECEEECSCCSGGGEEECTTCCEEECC
T ss_pred EecCCCCCHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHH----hhccccccccCCCEEeCCCChHhEEECCCCeEEEcc
Confidence 99999999999998754 899999999999999999999 56 899999999999999999999999
Q ss_pred eccccccCCCCCcceeecccccccccCCCccCC-----CCCCccccHHhHHHHHHHHHhCCCCCCccccCcc--------
Q 003855 646 FGISKLLGEGEDSVTQTMTMATIGYMAPEYGSE-----GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEM-------- 712 (791)
Q Consensus 646 fgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-----~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~-------- 712 (791)
||+|+.+.............||+.|+|||++.+ ..++.++|||||||++|||+||+.||.+......
T Consensus 175 Fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~ 254 (322)
T 3soc_A 175 FGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIG 254 (322)
T ss_dssp CTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHC
T ss_pred CCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhc
Confidence 999987765444333444579999999998876 3567789999999999999999999976433211
Q ss_pred ---hHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 713 ---SLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 713 ---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
....+.............. .......++.++.+++.+||+.||++|||+.|+++.|+++.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 255 QHPSLEDMQEVVVHKKKRPVLR--------DYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp SSCCHHHHHHHHTTSCCCCCCC--------GGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred cCCchhhhhhhhhcccCCCCcc--------ccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 1111111111111111111 1112234567799999999999999999999999999999764
No 44
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=2.7e-43 Score=375.32 Aligned_cols=286 Identities=36% Similarity=0.542 Sum_probs=233.8
Q ss_pred ccCCCCChhHHHHHhhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhh-HHHHHHHHHHHHHHhccCCccceeee
Q 003855 486 ATWRRTPYLDIQRATDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLE-RAFRSFDSECEVLRNVRHRNLIKILS 564 (791)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~l~~ 564 (791)
.....+++.+++...++|+..+.||+|+||.||+|+..+++.||||++..... .....+.+|+.++++++||||+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~ 94 (326)
T 3uim_A 15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 94 (326)
T ss_dssp CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred CccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEE
Confidence 34456788899999999999999999999999999988899999999875532 22336889999999999999999999
Q ss_pred eeccCCeeeEEEecCCCCCHHHHHhhCC---CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcE
Q 003855 565 SCSNPDFKALVLEFMPNGSLEKWLYSHN---YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAA 641 (791)
Q Consensus 565 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~ 641 (791)
++.++...++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+.+ ..+|+||||||+||+++.++.+
T Consensus 95 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~-~~~ivH~Dlkp~Nil~~~~~~~ 173 (326)
T 3uim_A 95 FCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHC-DPKIIHRDVKAANILLDEEFEA 173 (326)
T ss_dssp EECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSS-SSCEECCCCSGGGEEECTTCCE
T ss_pred EEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCC-CCCeEeCCCchhhEEECCCCCE
Confidence 9999999999999999999999998543 34899999999999999999999432 2289999999999999999999
Q ss_pred EEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCcc---ccCcchHHHHH
Q 003855 642 HVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM---FTGEMSLRRWV 718 (791)
Q Consensus 642 kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~---~~~~~~~~~~~ 718 (791)
||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||++|+.||+.. ........+|+
T Consensus 174 kl~Dfg~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~ 252 (326)
T 3uim_A 174 VVGDFGLAKLMDYKDT-HVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWV 252 (326)
T ss_dssp EECCCSSCEECCSSSS-CEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHH
T ss_pred EeccCccccccCcccc-cccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHH
Confidence 9999999987654332 2233456999999999998888999999999999999999999999742 22344566666
Q ss_pred HHhcCCC-hhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHH
Q 003855 719 KESLPHG-LTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKK 778 (791)
Q Consensus 719 ~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~ 778 (791)
....... .....+...... ....++..+.+++.+||+.||++|||+.|+++.|++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~ 308 (326)
T 3uim_A 253 KGLLKEKKLEALVDVDLQGN-----YKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 308 (326)
T ss_dssp TTTTSSCCSTTSSCTTCTTS-----CCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred HHHhhchhhhhhcChhhccc-----cCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcC
Confidence 6554433 334444333221 223567889999999999999999999999999975
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.1e-42 Score=399.14 Aligned_cols=409 Identities=18% Similarity=0.187 Sum_probs=318.3
Q ss_pred cCCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCc
Q 003855 4 QIPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSIT 83 (791)
Q Consensus 4 ~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 83 (791)
+||+.+. +++++|||++|+|+++.|.+|.++++|++|+|++|+|+ .+|+..|..+++|++|+|++|+|+++.+..|.
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 4565442 47999999999999999999999999999999999998 78777666699999999999999988888999
Q ss_pred CCCCCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhh
Q 003855 84 NATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIG 163 (791)
Q Consensus 84 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 163 (791)
++++|++|+|++|+++++.+..|+++++|+.|++++|+++.+.. +..+..+++|++|+|++|++++..+..+.
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~-------~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL-------PEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC-------CGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCC-------chhhccchhhhhhcccCcccccccccccc
Confidence 99999999999999999988999999999999999999987542 34578899999999999999988777665
Q ss_pred hhhh---hhhhhhcccccccccCCc-------------------------------------------------------
Q 003855 164 NFSA---SLQKFYAYECKLKGNIPQ------------------------------------------------------- 185 (791)
Q Consensus 164 ~~~~---~L~~L~l~~n~l~~~~~~------------------------------------------------------- 185 (791)
.+.. .+..++++.|.+..+.+.
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 5421 111223333333221111
Q ss_pred ------------------------------------------------cccCCCCCCEEEccCCccccccCc--------
Q 003855 186 ------------------------------------------------EIGNLSGLTLLSLHSNDLNGTISP-------- 209 (791)
Q Consensus 186 ------------------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~-------- 209 (791)
.+....+|+.|++.+|.+....+.
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l 354 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 354 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEE
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhc
Confidence 122233445555555544322221
Q ss_pred -----------cccCCCCCCEEEcccccCcc--cCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCC
Q 003855 210 -----------TMGRLKRLQGLSLRNNNLEG--SIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLT 276 (791)
Q Consensus 210 -----------~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 276 (791)
.+..+++|+.|++++|.+.. ..+..+..+.+|+.|+++.|.+.. .+..+..+++|+.+++++|...
T Consensus 355 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~ 433 (635)
T 4g8a_A 355 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK 433 (635)
T ss_dssp EEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEE
T ss_pred ccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccc
Confidence 11234455555555555532 233444455556666666665552 3445777888888888888776
Q ss_pred CCC-CccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccC-CCCCcchhccccccccccccccCCCCCCcc
Q 003855 277 SSI-PSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLS-GDIPSTIGALKDLETLSLARNQFQGPIPES 354 (791)
Q Consensus 277 ~~~-~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 354 (791)
... +..|..+.+++.++++.|.+.+..+..+..++.|+.|++++|.+. +..|..|..+++|+.|+|++|+|++..|..
T Consensus 434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 513 (635)
T 4g8a_A 434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513 (635)
T ss_dssp STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH
Confidence 544 356788999999999999999999999999999999999999854 457888999999999999999999988999
Q ss_pred cCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCCC-CCC-cCCccccccCCccccCCC
Q 003855 355 VGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVK-GSF-KNFSVESFFGNYALCGPP 423 (791)
Q Consensus 355 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~-~~l~~~~~~~n~~~c~~~ 423 (791)
|.++++|+.|+|++|+|++..|..|..+++|++|+|++|+|++.+|.. ..+ .+++.+.+.+|||.|+..
T Consensus 514 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999999999999999999999999999999999999999998864 334 678999999999999854
No 46
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=8.7e-44 Score=386.17 Aligned_cols=260 Identities=25% Similarity=0.432 Sum_probs=215.1
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 577 (791)
.++|.+.+.||+|+||.||+|++. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 192 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME 192 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEE
Confidence 468999999999999999999986 78999999987543 3344578899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCC
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGED 657 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~ 657 (791)
|+++|+|.+++...+..+++..+..++.|++.||+||| +.+|+||||||+||++++++.+||+|||+|+.......
T Consensus 193 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH----~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~ 268 (377)
T 3cbl_A 193 LVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLE----SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVY 268 (377)
T ss_dssp CCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEE
T ss_pred cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----HCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCce
Confidence 99999999999876666899999999999999999999 67899999999999999999999999999986543221
Q ss_pred cceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhh
Q 003855 658 SVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVR 736 (791)
Q Consensus 658 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 736 (791)
........++..|+|||.+.++.++.++|||||||++|||+| |..||...... ....++....
T Consensus 269 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~--~~~~~~~~~~-------------- 332 (377)
T 3cbl_A 269 AASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQ--QTREFVEKGG-------------- 332 (377)
T ss_dssp ECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHH--HHHHHHHTTC--------------
T ss_pred eecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCC--------------
Confidence 111122335778999999988899999999999999999998 99999764221 1122211110
Q ss_pred hHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 737 EEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 737 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
..+.+..++..+.+++.+||+.||++|||+.++++.|++++++
T Consensus 333 ---~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 333 ---RLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp ---CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ---CCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence 0111224567788999999999999999999999999999765
No 47
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.3e-43 Score=398.09 Aligned_cols=387 Identities=19% Similarity=0.235 Sum_probs=316.8
Q ss_pred CccCCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceec-CCc
Q 003855 2 AGQIPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGI-IPH 80 (791)
Q Consensus 2 ~g~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~-~~~ 80 (791)
++-.|..|+++++|++|+|++|+|+++.|++|.++++|++|+|++|+|+ .+|.. .+++|++|+|++|.+++. .|.
T Consensus 34 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~ 109 (520)
T 2z7x_B 34 SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICK 109 (520)
T ss_dssp CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCG
T ss_pred cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCccccccchh
Confidence 3445678999999999999999999999999999999999999999998 88887 489999999999999974 689
Q ss_pred cCcCCCCCCEEeccCccccccccccccccccc--cccccccccc--cccCCC-ccccc----------------------
Q 003855 81 SITNATKLVALDLGFNSFAGHILNTFGNLRHL--SLLSQVMNNL--TTESSS-ADQWS---------------------- 133 (791)
Q Consensus 81 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~-~~~~~---------------------- 133 (791)
.|+++++|++|+|++|++++ ..|..+++| +.|++++|.+ ...... .....
T Consensus 110 ~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~ 186 (520)
T 2z7x_B 110 EFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186 (520)
T ss_dssp GGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCC
T ss_pred hhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhh
Confidence 99999999999999999986 467778888 9999999998 222111 10000
Q ss_pred -------------------------cccccCCCCCCcEEEccCCCCcccCChhhhhh--hhhhhhhhcccccccccCCcc
Q 003855 134 -------------------------FLSSLTNCRNLTILSFGSNPLGGILPPVIGNF--SASLQKFYAYECKLKGNIPQE 186 (791)
Q Consensus 134 -------------------------~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~ 186 (791)
.++.+..+++|+.|++++|.+++..+..+... ..+|++|++++|++.+.+|..
T Consensus 187 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 266 (520)
T 2z7x_B 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266 (520)
T ss_dssp TTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCC
T ss_pred hcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccc
Confidence 01123344445555555554443222222111 137999999999999999998
Q ss_pred c-----cCCCCCCEEEccCCccccccCccccCC---CCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCcc
Q 003855 187 I-----GNLSGLTLLSLHSNDLNGTISPTMGRL---KRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPC 258 (791)
Q Consensus 187 ~-----~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 258 (791)
+ .++++|+.+++++|.+ ......+..+ .+|+.|++++|.+.... .+..+++|+.|++++|++++..|..
T Consensus 267 ~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~ 343 (520)
T 2z7x_B 267 DFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFEN 343 (520)
T ss_dssp CCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred hhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhh
Confidence 8 9999999999999999 3433555544 68999999999987432 2368899999999999999889999
Q ss_pred ccCCCCCcEEEcCCCcCCC--CCCccccCCCCCCeEEccCCcCcccCCc-ccccCCCCCEEecCCcccCCCCCcchhccc
Q 003855 259 LVSLTSLRELHLGSNKLTS--SIPSSLWSLEYILDINLSSNSLNDSLPS-NVQKLKVLTVLDLSRNQLSGDIPSTIGALK 335 (791)
Q Consensus 259 ~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~i~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 335 (791)
++.+++|++|+|++|++++ ..|..+..+++|++|++++|.+++.+|. .+..+++|+.|++++|++++..|..+. +
T Consensus 344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~ 421 (520)
T 2z7x_B 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P 421 (520)
T ss_dssp CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence 9999999999999999986 4567899999999999999999984554 588999999999999999877776554 7
Q ss_pred cccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCC
Q 003855 336 DLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPV 401 (791)
Q Consensus 336 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~ 401 (791)
+|+.|++++|+|+ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|+++|.++.
T Consensus 422 ~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 9999999999999 7888888999999999999999954444599999999999999999998764
No 48
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=2.2e-43 Score=370.35 Aligned_cols=275 Identities=25% Similarity=0.410 Sum_probs=213.3
Q ss_pred hhccccccccCCCcceEEEEEEe-----cCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeecc--CCee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-----SDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSN--PDFK 572 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~ 572 (791)
.++|++.+.||+|+||.||+|++ .+++.||||++........+.+.+|+.++++++||||+++++++.. ....
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 46899999999999999999984 3688999999987766667889999999999999999999999854 4568
Q ss_pred eEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccccc
Q 003855 573 ALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLL 652 (791)
Q Consensus 573 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~ 652 (791)
++||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~ 164 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG----TKRYIHRDLATRNILVENENRVKIGDFGLTKVL 164 (295)
T ss_dssp EEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEEEETTEEEECCCCSCC--
T ss_pred EEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHh----cCCcccCCCCHhhEEEcCCCeEEEccCcccccc
Confidence 9999999999999999987767999999999999999999999 678999999999999999999999999999876
Q ss_pred CCCCCc-ceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcc
Q 003855 653 GEGEDS-VTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVD 731 (791)
Q Consensus 653 ~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d 731 (791)
...... .......++..|+|||.+.+..++.++||||||+++|||+||..|+..... .+..............
T Consensus 165 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~------~~~~~~~~~~~~~~~~ 238 (295)
T 3ugc_A 165 PQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA------EFMRMIGNDKQGQMIV 238 (295)
T ss_dssp -----------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHH------HHHHHHCTTCCTHHHH
T ss_pred cCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChH------HHHhhhcCccccchhH
Confidence 543322 222334577889999999888999999999999999999999999865321 1111111110000000
Q ss_pred hh---hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhc
Q 003855 732 AN---LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFL 784 (791)
Q Consensus 732 ~~---~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~ 784 (791)
.. ........+.+..++.++.+++.+||+.||++|||+.|+++.|++++++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l~ 294 (295)
T 3ugc_A 239 FHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMA 294 (295)
T ss_dssp HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhcc
Confidence 00 000111112233567889999999999999999999999999999987653
No 49
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.2e-43 Score=371.05 Aligned_cols=264 Identities=28% Similarity=0.447 Sum_probs=213.9
Q ss_pred hhccccccccCCCcceEEEEEEec----CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS----DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 574 (791)
.++|++.+.||+|+||.||+|++. .+..||||++.... ....+.+.+|+.++++++||||+++++++.+++..++
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 127 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI 127 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence 367899999999999999999974 34569999997653 4455778999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCC
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~ 654 (791)
||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 128 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 203 (325)
T 3kul_A 128 VTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLS----DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLED 203 (325)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTCCEEECCCSSCEECC-
T ss_pred EeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH----HCCeeCCCCCcceEEECCCCCEEECCCCccccccc
Confidence 99999999999999877667999999999999999999999 67899999999999999999999999999988754
Q ss_pred CCCc-ceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcch
Q 003855 655 GEDS-VTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDA 732 (791)
Q Consensus 655 ~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 732 (791)
.... .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... .....+....
T Consensus 204 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~~~~~~~---------- 271 (325)
T 3kul_A 204 DPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNR--DVISSVEEGY---------- 271 (325)
T ss_dssp ---CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHH--HHHHHHHTTC----------
T ss_pred CccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHHcCC----------
Confidence 4322 22233356788999999988899999999999999999999 99999753221 1111111100
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhccc
Q 003855 733 NLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLDD 786 (791)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~~ 786 (791)
..+.+..++..+.+++.+||+.||++||++.|+++.|+.+.+.....
T Consensus 272 -------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~~~ 318 (325)
T 3kul_A 272 -------RLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPESL 318 (325)
T ss_dssp -------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC--
T ss_pred -------CCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCcccc
Confidence 01112245677889999999999999999999999999997665443
No 50
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=3.5e-42 Score=360.94 Aligned_cols=250 Identities=23% Similarity=0.325 Sum_probs=208.8
Q ss_pred hhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEec
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEF 578 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 578 (791)
.++|+..+.||+|+||.||+|.. .+++.||||++........+.+.+|+.++++++||||+++++++.+++..++||||
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 98 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 98 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence 36799999999999999999996 47899999999876655567789999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCc
Q 003855 579 MPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDS 658 (791)
Q Consensus 579 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~ 658 (791)
+++|+|.+++.... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 99 ~~~~~L~~~~~~~~--~~~~~~~~~~~qi~~~l~~lH----~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~- 171 (297)
T 3fxz_A 99 LAGGSLTDVVTETC--MDEGQIAAVCRECLQALEFLH----SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS- 171 (297)
T ss_dssp CTTCBHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC-
T ss_pred CCCCCHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHH----hCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc-
Confidence 99999999998764 899999999999999999999 67899999999999999999999999999987654332
Q ss_pred ceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhhH
Q 003855 659 VTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREE 738 (791)
Q Consensus 659 ~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 738 (791)
......||+.|+|||.+.+..++.++|||||||++|||++|+.||........ .........+.
T Consensus 172 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-~~~~~~~~~~~-------------- 235 (297)
T 3fxz_A 172 -KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRA-LYLIATNGTPE-------------- 235 (297)
T ss_dssp -CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH-HHHHHHHCSCC--------------
T ss_pred -ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhCCCCC--------------
Confidence 23345799999999999999999999999999999999999999975322111 11111110000
Q ss_pred HhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 739 QAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 739 ~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
...+..++..+.+++.+||+.||++|||+.|+++
T Consensus 236 --~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 236 --LQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp --CSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred --CCCccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 0111234566889999999999999999999976
No 51
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=1.2e-42 Score=366.38 Aligned_cols=262 Identities=26% Similarity=0.400 Sum_probs=204.4
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 577 (791)
.++|++.+.||+|+||.||+|+. +|+.||||++.... ....+.+.+|++++++++||||+++++++.+....++|||
T Consensus 36 ~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 114 (309)
T 3p86_A 36 WCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTE 114 (309)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEE
T ss_pred hhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEe
Confidence 46899999999999999999987 68899999986543 3445678999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHHccCCCCC--eEecCCCCCCeEeCCCCcEEEeeeccccccC
Q 003855 578 FMPNGSLEKWLYSHNY--FLDILERLNIMIDVGSALEYLHHGHSSAP--IIHCDLKPTNILLDENMAAHVSDFGISKLLG 653 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~~--i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~ 653 (791)
|+++|+|.+++..... .+++..+..++.|++.||+||| +.+ |+||||||+||+++.++.+||+|||+++...
T Consensus 115 ~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~ 190 (309)
T 3p86_A 115 YLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH----NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKA 190 (309)
T ss_dssp CCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHH----TSSSCCCCTTCCGGGEEECTTCCEEECCCC------
T ss_pred cCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH----cCCCCEECCCCChhhEEEeCCCcEEECCCCCCcccc
Confidence 9999999999986542 3899999999999999999999 667 9999999999999999999999999998653
Q ss_pred CCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchh
Q 003855 654 EGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDAN 733 (791)
Q Consensus 654 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 733 (791)
... .......||+.|+|||.+.+..++.++|||||||++|||++|+.||...... .....+......
T Consensus 191 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~--~~~~~~~~~~~~--------- 257 (309)
T 3p86_A 191 STF--LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPA--QVVAAVGFKCKR--------- 257 (309)
T ss_dssp -------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHH--HHHHHHHHSCCC---------
T ss_pred ccc--cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhcCCC---------
Confidence 322 1233456899999999999999999999999999999999999999763221 111111110000
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhccc
Q 003855 734 LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLDD 786 (791)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~~ 786 (791)
...+..++..+.+++.+||+.||++|||+.|+++.|+.+.+.....
T Consensus 258 -------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~p~ 303 (309)
T 3p86_A 258 -------LEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVPP 303 (309)
T ss_dssp -------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-----
T ss_pred -------CCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCCCC
Confidence 0111234567889999999999999999999999999987655443
No 52
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.6e-41 Score=389.17 Aligned_cols=396 Identities=20% Similarity=0.234 Sum_probs=255.6
Q ss_pred CCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcC
Q 003855 5 IPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITN 84 (791)
Q Consensus 5 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 84 (791)
||..+. ++|++|+|++|+|+++.|.+|.++++|++|+|++|+|++..|..+.. +++|++|+|++|+|+. +|.. .
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~-lp~~--~ 119 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEYLDVSHNRLQN-ISCC--P 119 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCEEECTTSCCCE-ECSC--C
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCEEECCCCcCCc-cCcc--c
Confidence 444443 56666666666666555566666666666666666665333333333 5666666666666663 3333 5
Q ss_pred CCCCCEEeccCccccccc-cccccccccccccccccccccccCCCccccccccccCCCCCC--cEEEccCCCC--cccCC
Q 003855 85 ATKLVALDLGFNSFAGHI-LNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNL--TILSFGSNPL--GGILP 159 (791)
Q Consensus 85 l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L--~~L~L~~N~l--~~~~~ 159 (791)
+++|++|+|++|+++++. +..|+++++|+.|++++|+++... +..+++| ++|++++|++ ++..|
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~-----------~~~l~~L~L~~L~L~~n~l~~~~~~~ 188 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD-----------LLPVAHLHLSCILLDLVSYHIKGGET 188 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT-----------TGGGTTSCEEEEEEEESSCCCCSSSC
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc-----------hhhhhhceeeEEEeecccccccccCc
Confidence 666666666666666543 356666666666666666665421 2333333 6666666666 55555
Q ss_pred hhhhhhhhhhhhhhcccccccccCCc-cccCCCCCCEEEccCCc----------------------------cccc----
Q 003855 160 PVIGNFSASLQKFYAYECKLKGNIPQ-EIGNLSGLTLLSLHSND----------------------------LNGT---- 206 (791)
Q Consensus 160 ~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~----------------------------l~~~---- 206 (791)
..+..+......+++++|.+.+.+++ .+..+++|+.|++++|+ +.+.
T Consensus 189 ~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~ 268 (562)
T 3a79_B 189 ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268 (562)
T ss_dssp CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHH
T ss_pred ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHH
Confidence 44444321111223333333322221 12233344444444442 1100
Q ss_pred cCccccCCCCCCEEEcccccCcccCCccc-----ccc--------------------------CCCceEEecCCccCCCC
Q 003855 207 ISPTMGRLKRLQGLSLRNNNLEGSIPYDL-----CHL--------------------------KLMFGIRLTGNKLSGHI 255 (791)
Q Consensus 207 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l--------------------------~~L~~L~L~~N~i~~~~ 255 (791)
.+.. ...++|++|++++|.+++.+|..+ ..+ .+|+.|++++|.+....
T Consensus 269 ~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~ 347 (562)
T 3a79_B 269 LFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347 (562)
T ss_dssp HHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred HHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc
Confidence 0000 112356666666666665555444 222 45777888888776322
Q ss_pred CccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCccc--CCcccccCCCCCEEecCCcccCCCCC-cchh
Q 003855 256 PPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDS--LPSNVQKLKVLTVLDLSRNQLSGDIP-STIG 332 (791)
Q Consensus 256 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~--~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~ 332 (791)
....+++|++|++++|++++..|..+..+++|+.|++++|++++. .|..+..+++|+.|++++|++++.+| ..+.
T Consensus 348 --~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 348 --CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp --CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred --CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 126889999999999999988899999999999999999999863 34678899999999999999997455 4588
Q ss_pred ccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCC-CCCCcCCccc
Q 003855 333 ALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPV-KGSFKNFSVE 411 (791)
Q Consensus 333 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~~ 411 (791)
.+++|+.|++++|++++..|..+. ++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.++. ...+++++.+
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEE
Confidence 899999999999999876666554 68999999999998 6777777999999999999999976665 5677888899
Q ss_pred cccCCccccCCC
Q 003855 412 SFFGNYALCGPP 423 (791)
Q Consensus 412 ~~~~n~~~c~~~ 423 (791)
.+.+|++.|+.+
T Consensus 503 ~l~~N~~~c~c~ 514 (562)
T 3a79_B 503 WLHDNPWDCTCP 514 (562)
T ss_dssp ECCSCCBCCCHH
T ss_pred EecCCCcCCCcc
Confidence 999999998743
No 53
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=2.4e-41 Score=357.02 Aligned_cols=281 Identities=30% Similarity=0.469 Sum_probs=227.6
Q ss_pred CCCCChhHHHHHhhccccc------cccCCCcceEEEEEEecCCcEEEEEEeehhh----hHHHHHHHHHHHHHHhccCC
Q 003855 488 WRRTPYLDIQRATDEFNEC------NLLGTGSFGSVYKGTISDGTDVAIKIFNLQL----ERAFRSFDSECEVLRNVRHR 557 (791)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~------~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~ 557 (791)
...+.+.++..++++|... +.||+|+||.||+|.. +++.||||++.... ....+.+.+|+.++++++||
T Consensus 12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 90 (307)
T 2nru_A 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE 90 (307)
T ss_dssp CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence 3456788999999988877 8999999999999997 68899999986432 34467889999999999999
Q ss_pred ccceeeeeeccCCeeeEEEecCCCCCHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEe
Q 003855 558 NLIKILSSCSNPDFKALVLEFMPNGSLEKWLYSH--NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILL 635 (791)
Q Consensus 558 niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill 635 (791)
||+++++++.+.+..++||||+++|+|.+++... ...+++..+..++.|++.||.||| +.+|+||||||+||++
T Consensus 91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH----~~~i~H~dlkp~Nili 166 (307)
T 2nru_A 91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH----ENHHIHRDIKSANILL 166 (307)
T ss_dssp TBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEE
T ss_pred CeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh----cCCeecCCCCHHHEEE
Confidence 9999999999999999999999999999999743 345899999999999999999999 6789999999999999
Q ss_pred CCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHH
Q 003855 636 DENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLR 715 (791)
Q Consensus 636 ~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~ 715 (791)
++++.+||+|||+++...............||+.|+|||.+.+ .++.++||||||+++|||++|+.||....... ...
T Consensus 167 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~-~~~ 244 (307)
T 2nru_A 167 DEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQ-LLL 244 (307)
T ss_dssp CTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSS-BTT
T ss_pred cCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchH-HHH
Confidence 9999999999999987655443333344578999999998764 58899999999999999999999998644332 122
Q ss_pred HHHHHh--cCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHH
Q 003855 716 RWVKES--LPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKV 781 (791)
Q Consensus 716 ~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~ 781 (791)
.+.... ....+.+.+++.+.. ....++..+.+++.+||+.||++||++.|+++.|+++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 245 DIKEEIEDEEKTIEDYIDKKMND------ADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp HHHHHHHTTSCCHHHHSCSSCSC------CCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred HHHHHhhhhhhhhhhhccccccc------cchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 222211 112233344433221 123566789999999999999999999999999998854
No 54
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=4.3e-42 Score=361.94 Aligned_cols=264 Identities=27% Similarity=0.441 Sum_probs=208.1
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehh--hhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQ--LERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 577 (791)
.++|++.+.||+|+||.||+|+.. ..+|+|+++.. .....+.+.+|+.++++++||||+++++++.. +..++|||
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~lv~e 111 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc-CcEEEEEe
Confidence 468999999999999999999874 36899987643 24456788999999999999999999998754 55789999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCC
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGED 657 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~ 657 (791)
|+++|+|.+++......+++.++..++.|++.||+||| +.+|+||||||+||++++++.+||+|||+|+.......
T Consensus 112 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~~ 187 (307)
T 3lb7_A 112 WCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH----AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG 187 (307)
T ss_dssp CCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCSSSEEECTTSCEEECCCCSSCC------
T ss_pred cCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH----hCCEeeCCCChhhEEEcCCCCEEEccCCCceecccccc
Confidence 99999999999877777999999999999999999999 67899999999999999999999999999986644333
Q ss_pred cceeecccccccccCCCccC---CCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhc-CCChhhhcchh
Q 003855 658 SVTQTMTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESL-PHGLTEVVDAN 733 (791)
Q Consensus 658 ~~~~~~~~g~~~y~aPE~~~---~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~ 733 (791)
........||+.|+|||.+. +..++.++|||||||++|||++|+.||......+. ....+.... ......
T Consensus 188 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~-~~~~~~~~~~~~~~~~----- 261 (307)
T 3lb7_A 188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQ-IIFMVGRGYASPDLSK----- 261 (307)
T ss_dssp ------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH-HHHHHHHTCCCCCSTT-----
T ss_pred cccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHH-HHHHHhcCCCCcchhh-----
Confidence 33334457999999999875 66789999999999999999999999976432221 111111111 111100
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcc
Q 003855 734 LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLD 785 (791)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~ 785 (791)
....++..+.+++.+||+.+|++||++.|+++.|+.+....++
T Consensus 262 ---------~~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~pk 304 (307)
T 3lb7_A 262 ---------LYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304 (307)
T ss_dssp ---------SCSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred ---------hhcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhccc
Confidence 0113557788999999999999999999999999999876653
No 55
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1e-41 Score=380.88 Aligned_cols=373 Identities=19% Similarity=0.195 Sum_probs=303.8
Q ss_pred CCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcce-ecCCccCcCCCCCCEEec
Q 003855 15 LQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLT-GIIPHSITNATKLVALDL 93 (791)
Q Consensus 15 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L 93 (791)
-+.++.++++++. +|. + .++|++|+|++|.+++..|..+.. +++|++|+|++|.+. .+.+..|.++++|++|+|
T Consensus 12 ~~~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSS-CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhcc-CccccEEECcCCcccceECcccccccccCCEEeC
Confidence 3467778888773 354 3 267888888888887444555544 788888888888876 345667888888888888
Q ss_pred cCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhh
Q 003855 94 GFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFY 173 (791)
Q Consensus 94 ~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 173 (791)
++|++++..+..|.++++|++|++++|+++..... ...|..+++|++|+|++|++++..
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~~~l~~L~~L~L~~n~l~~~~--------------- 145 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS------GNFFKPLTSLEMLVLRDNNIKKIQ--------------- 145 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH------SSTTTTCTTCCEEECCSSBCCSCC---------------
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccC------cccccCcccCCEEECCCCccCccC---------------
Confidence 88888877777888888888888888887642100 112677778888888888777543
Q ss_pred cccccccccCCcc-ccCCCCCCEEEccCCccccccCccccCC--CCCCEEEcccccCcccCCcc--------ccccCCCc
Q 003855 174 AYECKLKGNIPQE-IGNLSGLTLLSLHSNDLNGTISPTMGRL--KRLQGLSLRNNNLEGSIPYD--------LCHLKLMF 242 (791)
Q Consensus 174 l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~--------~~~l~~L~ 242 (791)
|.. +.++++|++|+|++|++++..+..+..+ .+|+.|++++|.+.+..+.. +..+++|+
T Consensus 146 ----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~ 215 (455)
T 3v47_A 146 ----------PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215 (455)
T ss_dssp ----------CCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEE
T ss_pred ----------cccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceee
Confidence 333 6788999999999999999888888876 78999999999999765544 33668999
Q ss_pred eEEecCCccCCCCCccccCC---CCCcEEEcCCCcCCCC----------CCccccC--CCCCCeEEccCCcCcccCCccc
Q 003855 243 GIRLTGNKLSGHIPPCLVSL---TSLRELHLGSNKLTSS----------IPSSLWS--LEYILDINLSSNSLNDSLPSNV 307 (791)
Q Consensus 243 ~L~L~~N~i~~~~~~~~~~l---~~L~~L~L~~N~l~~~----------~~~~~~~--l~~L~~L~l~~N~i~~~~~~~~ 307 (791)
.|++++|++++..|..+..+ ++|+.|++++|.+.+. .+..+.. .++|+.|++++|.+++..|..+
T Consensus 216 ~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 295 (455)
T 3v47_A 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF 295 (455)
T ss_dssp EEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT
T ss_pred eEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhc
Confidence 99999999998777777654 8999999999976532 1222332 3689999999999999999999
Q ss_pred ccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCce
Q 003855 308 QKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQ 387 (791)
Q Consensus 308 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 387 (791)
..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..|..+++|++
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 99999999999999999888999999999999999999999888899999999999999999999988999999999999
Q ss_pred EEccCCCCcccCCCC-CCCcCCccccccCCccccCCC
Q 003855 388 FNVSHNRLEGEIPVK-GSFKNFSVESFFGNYALCGPP 423 (791)
Q Consensus 388 l~l~~N~l~~~~~~~-~~~~~l~~~~~~~n~~~c~~~ 423 (791)
|++++|++++.++.. ..+++++.+.+.+|++.|+.+
T Consensus 376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999877754 578899999999999999866
No 56
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-41 Score=390.43 Aligned_cols=388 Identities=17% Similarity=0.175 Sum_probs=303.3
Q ss_pred CccCCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceec-CCc
Q 003855 2 AGQIPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGI-IPH 80 (791)
Q Consensus 2 ~g~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~-~~~ 80 (791)
++-.|..|+++++|++|+|++|+|+++.|++|.++++|++|+|++|+|+ .+|.. .+++|++|+|++|+++++ .|.
T Consensus 65 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~ 140 (562)
T 3a79_B 65 SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCK 140 (562)
T ss_dssp CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCG
T ss_pred cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchH
Confidence 3445579999999999999999999999999999999999999999998 89987 489999999999999974 468
Q ss_pred cCcCCCCCCEEeccCccccccccccccccccc--cccccccccc--cccCCCcc-ccc-----------------ccccc
Q 003855 81 SITNATKLVALDLGFNSFAGHILNTFGNLRHL--SLLSQVMNNL--TTESSSAD-QWS-----------------FLSSL 138 (791)
Q Consensus 81 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~-~~~-----------------~~~~l 138 (791)
.|+++++|++|+|++|+++.. .|.++++| +.|++++|++ +....... ... ....+
T Consensus 141 ~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~ 217 (562)
T 3a79_B 141 EFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV 217 (562)
T ss_dssp GGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEE
T ss_pred hhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcc
Confidence 999999999999999999864 45555665 9999999999 44332210 000 00123
Q ss_pred CCCCCCcEEEccCCCC----------------------------cccCChhhhh--hhhhhhhhhcccccccccCCccc-
Q 003855 139 TNCRNLTILSFGSNPL----------------------------GGILPPVIGN--FSASLQKFYAYECKLKGNIPQEI- 187 (791)
Q Consensus 139 ~~l~~L~~L~L~~N~l----------------------------~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~- 187 (791)
..+++|+.|++++|+. .+.....+.. ...+|++|++++|.+.+.+|..+
T Consensus 218 ~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~ 297 (562)
T 3a79_B 218 NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297 (562)
T ss_dssp SSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCC
T ss_pred cccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhh
Confidence 4566777777777641 1100000000 01267778888888877777766
Q ss_pred ----cCCCCCCEEEccCCccccccCccccC---CCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCcccc
Q 003855 188 ----GNLSGLTLLSLHSNDLNGTISPTMGR---LKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLV 260 (791)
Q Consensus 188 ----~~l~~L~~L~L~~N~l~~~~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 260 (791)
.+++.|+.++++.|.+. .....+.. ..+|++|++++|.+.... ....+++|+.|++++|++++..|..+.
T Consensus 298 ~~~~~~L~~L~~~~~~~~~~~-~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~ 374 (562)
T 3a79_B 298 TYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS 374 (562)
T ss_dssp CCCSCSCCEEEEEEEEECCCS-SCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred hcccccchheehhhcccceee-cChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc
Confidence 56666666666666661 22122222 257999999999886322 127889999999999999988999999
Q ss_pred CCCCCcEEEcCCCcCCCCC--CccccCCCCCCeEEccCCcCcccCC-cccccCCCCCEEecCCcccCCCCCcchhccccc
Q 003855 261 SLTSLRELHLGSNKLTSSI--PSSLWSLEYILDINLSSNSLNDSLP-SNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDL 337 (791)
Q Consensus 261 ~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~i~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 337 (791)
++++|++|+|++|++++.. |..+..+++|++|++++|.+++.+| ..+..+++|+.|++++|++++..|..+. ++|
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L 452 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKV 452 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTC
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcC
Confidence 9999999999999999643 5678999999999999999998444 4688999999999999999876665543 799
Q ss_pred cccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCCC
Q 003855 338 ETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVK 402 (791)
Q Consensus 338 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~ 402 (791)
+.|+|++|+|+ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.++..
T Consensus 453 ~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 453 KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp SEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred CEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 99999999999 78887789999999999999999544444999999999999999999988753
No 57
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=2e-42 Score=374.29 Aligned_cols=261 Identities=26% Similarity=0.467 Sum_probs=203.4
Q ss_pred hhccccccccCCCcceEEEEEEec----CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS----DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 574 (791)
.++|++.+.||+|+||.||+|+.. ++..||||++.... ....+.+.+|+.++++++||||+++++++.+....++
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 368999999999999999999864 57789999987543 4455789999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCC
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~ 654 (791)
||||+++|+|.+++......+++.++..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 124 v~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 199 (373)
T 2qol_A 124 VTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS----DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLED 199 (373)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH----HCCeeCCCCCcceEEEcCCCCEEECcCcccccccc
Confidence 99999999999999987767999999999999999999999 67899999999999999999999999999987654
Q ss_pred CCCc-ceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcch
Q 003855 655 GEDS-VTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDA 732 (791)
Q Consensus 655 ~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 732 (791)
.... .......+++.|+|||++.+..++.++|||||||++|||++ |+.||...... ...+.+...
T Consensus 200 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~--~~~~~i~~~----------- 266 (373)
T 2qol_A 200 DPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQ--DVIKAVDEG----------- 266 (373)
T ss_dssp --------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHH--HHHHHHHTT-----------
T ss_pred CCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcC-----------
Confidence 3221 11222235778999999988899999999999999999998 99999753221 111111110
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHh
Q 003855 733 NLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKF 783 (791)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~ 783 (791)
...+.+..++..+.+++.+||+.||++||++.|+++.|+++.+..
T Consensus 267 ------~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~ 311 (373)
T 2qol_A 267 ------YRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNP 311 (373)
T ss_dssp ------EECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCG
T ss_pred ------CCCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCc
Confidence 001112245677889999999999999999999999999997653
No 58
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=2.8e-41 Score=355.50 Aligned_cols=266 Identities=25% Similarity=0.395 Sum_probs=206.7
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHh--ccCCccceeeeeecc----CCeee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRN--VRHRNLIKILSSCSN----PDFKA 573 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~----~~~~~ 573 (791)
.++|++.+.||+|+||.||+|+. +++.||||++..... +.+..|.+++.. ++||||+++++++.+ ....+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~---~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~ 82 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRDE---KSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGGGH---HHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccccc---hhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence 57899999999999999999998 689999999875432 345556677666 799999999998643 35678
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccC----CCCCeEecCCCCCCeEeCCCCcEEEeeeccc
Q 003855 574 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGH----SSAPIIHCDLKPTNILLDENMAAHVSDFGIS 649 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~----~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla 649 (791)
+||||+++|+|.++++.. .+++..+..++.|++.||+|||... .+.+|+||||||+||+++.++.+||+|||+|
T Consensus 83 lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a 160 (301)
T 3q4u_A 83 LITHYHEMGSLYDYLQLT--TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLA 160 (301)
T ss_dssp EEECCCTTCBHHHHHTTC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred EehhhccCCCHHHHHhhc--ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCe
Confidence 999999999999999654 4899999999999999999999321 1458999999999999999999999999999
Q ss_pred cccCCCCCcc--eeecccccccccCCCccCCC------CCCccccHHhHHHHHHHHHhC----------CCCCCccccCc
Q 003855 650 KLLGEGEDSV--TQTMTMATIGYMAPEYGSEG------IVSAKCDVYSYGVLLMETFTR----------KRPTDEMFTGE 711 (791)
Q Consensus 650 ~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~------~~~~~~Dv~s~G~vl~elltg----------~~p~~~~~~~~ 711 (791)
+......... ......||+.|+|||++.+. .++.++|||||||++|||+|| +.||.......
T Consensus 161 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~ 240 (301)
T 3q4u_A 161 VMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPND 240 (301)
T ss_dssp EEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS
T ss_pred eecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCC
Confidence 8765433221 12234799999999988776 566799999999999999999 78887655444
Q ss_pred chHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHH
Q 003855 712 MSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKI 779 (791)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~ 779 (791)
..................... ......++..+.+++.+||+.||++|||+.|+++.|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 241 PSFEDMRKVVCVDQQRPNIPN--------RWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp CCHHHHHHHHTTSCCCCCCCG--------GGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred cchhhhhHHHhccCCCCCCCh--------hhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 444333332221111111110 011224667899999999999999999999999999876
No 59
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=5.2e-42 Score=363.91 Aligned_cols=247 Identities=23% Similarity=0.338 Sum_probs=205.2
Q ss_pred hhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
.++|++.+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 93 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM 93 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence 46899999999999999999997 589999999987653 344567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~ 656 (791)
||+++|+|.+++...+. +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+......
T Consensus 94 e~~~~~~L~~~l~~~~~-l~~~~~~~~~~qi~~al~~lH----~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 168 (328)
T 3fe3_A 94 EYASGGEVFDYLVAHGR-MKEKEARSKFRQIVSAVQYCH----QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG 168 (328)
T ss_dssp CCCTTCBHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSC
T ss_pred ECCCCCcHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH----HCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCC
Confidence 99999999999986543 899999999999999999999 6789999999999999999999999999998765432
Q ss_pred CcceeecccccccccCCCccCCCCCC-ccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 657 DSVTQTMTMATIGYMAPEYGSEGIVS-AKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~~~~~~~-~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
.....+||+.|+|||++.+..++ .++||||+||++|||++|+.||++.... .....+....
T Consensus 169 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--~~~~~i~~~~------------- 230 (328)
T 3fe3_A 169 ---KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLK--ELRERVLRGK------------- 230 (328)
T ss_dssp ---GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC-------------
T ss_pred ---ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHH--HHHHHHHhCC-------------
Confidence 22345799999999998877764 7999999999999999999999763211 1111111100
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
...+..++..+.+++.+||+.||++|||+.|+++
T Consensus 231 -----~~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 231 -----YRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp -----CCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred -----CCCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0001123456779999999999999999999976
No 60
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=9.4e-42 Score=352.77 Aligned_cols=258 Identities=26% Similarity=0.379 Sum_probs=213.9
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEecC
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEFM 579 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 579 (791)
.++|+..+.||+|+||.||+|+..+++.||+|++..... ..+.+.+|++++++++||||+++++++.+....++||||+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 87 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 87 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeC
Confidence 367999999999999999999998899999999875532 2357889999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCcc
Q 003855 580 PNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDSV 659 (791)
Q Consensus 580 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~~ 659 (791)
++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...... ..
T Consensus 88 ~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH----~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~ 162 (269)
T 4hcu_A 88 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE----EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YT 162 (269)
T ss_dssp TTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH-HH
T ss_pred CCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHH----hCCeecCCcchheEEEcCCCCEEeccccccccccccc-cc
Confidence 999999999877777999999999999999999999 6789999999999999999999999999998764322 11
Q ss_pred eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhhH
Q 003855 660 TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREE 738 (791)
Q Consensus 660 ~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 738 (791)
......+++.|+|||.+.+..++.++||||+|+++|||++ |+.||...... .....+.......
T Consensus 163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~--~~~~~~~~~~~~~------------- 227 (269)
T 4hcu_A 163 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS--EVVEDISTGFRLY------------- 227 (269)
T ss_dssp STTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHTTCCCC-------------
T ss_pred cccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHH--HHHHHHhcCccCC-------------
Confidence 2223456788999999988899999999999999999999 99998753221 1111111110000
Q ss_pred HhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 739 QAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 739 ~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
.+..++..+.+++.+||+.||++||++.|+++.|+++.+.
T Consensus 228 ----~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 228 ----KPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp ----CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ----CCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence 0112345678999999999999999999999999998764
No 61
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=2.8e-42 Score=372.79 Aligned_cols=267 Identities=26% Similarity=0.407 Sum_probs=216.5
Q ss_pred hHHHHHhhccccccccCCCcceEEEEEEe------cCCcEEEEEEeehhh-hHHHHHHHHHHHHHHhc-cCCccceeeee
Q 003855 494 LDIQRATDEFNECNLLGTGSFGSVYKGTI------SDGTDVAIKIFNLQL-ERAFRSFDSECEVLRNV-RHRNLIKILSS 565 (791)
Q Consensus 494 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~ 565 (791)
.......++|++.+.||+|+||.||+|++ .+++.||||++.... ....+.+.+|+++++++ +||||++++++
T Consensus 15 ~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~ 94 (359)
T 3vhe_A 15 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGA 94 (359)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred ccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeee
Confidence 34444568999999999999999999974 246889999997643 34456789999999999 79999999999
Q ss_pred eccCCe-eeEEEecCCCCCHHHHHhhCCC---------------------------------------------------
Q 003855 566 CSNPDF-KALVLEFMPNGSLEKWLYSHNY--------------------------------------------------- 593 (791)
Q Consensus 566 ~~~~~~-~~lv~e~~~~g~L~~~l~~~~~--------------------------------------------------- 593 (791)
+.+.+. .++||||+++|+|.+++.....
T Consensus 95 ~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (359)
T 3vhe_A 95 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLS 174 (359)
T ss_dssp ECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC---------------------------------------------
T ss_pred eecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccc
Confidence 877554 8999999999999999986432
Q ss_pred --------------CCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCcc
Q 003855 594 --------------FLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDSV 659 (791)
Q Consensus 594 --------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~~ 659 (791)
.+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.........
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH----~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~ 250 (359)
T 3vhe_A 175 DVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA----SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV 250 (359)
T ss_dssp ---------CTTTTCBCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCE
T ss_pred hhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH----HCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccch
Confidence 2889999999999999999999 6789999999999999999999999999998775554444
Q ss_pred eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhhH
Q 003855 660 TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREE 738 (791)
Q Consensus 660 ~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 738 (791)
......||+.|+|||++.+..++.++|||||||++|||+| |+.||......+. ....+.......
T Consensus 251 ~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~-~~~~~~~~~~~~------------- 316 (359)
T 3vhe_A 251 RKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE-FCRRLKEGTRMR------------- 316 (359)
T ss_dssp EC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH-HHHHHHHTCCCC-------------
T ss_pred hccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHH-HHHHHHcCCCCC-------------
Confidence 4555678999999999988999999999999999999998 9999976433221 222121111111
Q ss_pred HhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 739 QAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 739 ~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
.+..++.++.+++.+||+.||++|||+.|+++.|+++...
T Consensus 317 ----~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 356 (359)
T 3vhe_A 317 ----APDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 356 (359)
T ss_dssp ----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ----CCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence 1112446688999999999999999999999999998764
No 62
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.6e-42 Score=367.02 Aligned_cols=250 Identities=25% Similarity=0.334 Sum_probs=197.2
Q ss_pred HhhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
..++|++.+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 87 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVL 87 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEE
Confidence 357899999999999999999996 479999999986543 233456889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~ 656 (791)
||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||++++++.+||+|||+|.......
T Consensus 88 E~~~gg~L~~~l~~~~~-l~~~~~~~i~~qi~~aL~~LH----~~givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~ 162 (347)
T 3zgw_A 88 EYCPGGELFDYIISQDR-LSEEETRVVFRQIVSAVAYVH----SQGYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGNK 162 (347)
T ss_dssp ECCTTCBHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTSCEEECCCTTCBC-----
T ss_pred eCCCCCCHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH----HCCeEeCCccHHHEEEcCCCCEEEEeccCcccccCCC
Confidence 99999999999976543 899999999999999999999 6789999999999999999999999999998654332
Q ss_pred CcceeecccccccccCCCccCCCCC-CccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 657 DSVTQTMTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
. ......+||+.|+|||++.+..+ +.++||||+||++|||++|+.||++... ......+.....
T Consensus 163 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~--~~~~~~i~~~~~------------ 227 (347)
T 3zgw_A 163 D-YHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNV--MALYKKIMRGKY------------ 227 (347)
T ss_dssp ----------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTCC------------
T ss_pred C-ccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHcCCC------------
Confidence 2 22334579999999999887775 8899999999999999999999975221 111111111000
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+..++..+.+++.+||+.||++|||+.|+++
T Consensus 228 ------~~p~~~s~~~~~li~~~L~~dP~~Rps~~eil~ 260 (347)
T 3zgw_A 228 ------DVPKWLSPSSILLLQQMLQVDPKKRISMKNLLN 260 (347)
T ss_dssp ------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ------CCCCCCCHHHHHHHHHHcccCHhHCcCHHHHhc
Confidence 011123456779999999999999999999986
No 63
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=1.7e-41 Score=359.78 Aligned_cols=260 Identities=21% Similarity=0.303 Sum_probs=212.9
Q ss_pred CCChhHHHHHhhc----------cccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCc
Q 003855 490 RTPYLDIQRATDE----------FNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRN 558 (791)
Q Consensus 490 ~~~~~~~~~~~~~----------~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n 558 (791)
.+++.++..+++. |+..+.||+|+||.||+|+.. +|+.||||++........+.+.+|+.++++++|||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n 103 (321)
T 2c30_A 24 VVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFN 103 (321)
T ss_dssp -CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTT
T ss_pred cCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCC
Confidence 3556666666643 677789999999999999976 79999999998766556678899999999999999
Q ss_pred cceeeeeeccCCeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCC
Q 003855 559 LIKILSSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDEN 638 (791)
Q Consensus 559 iv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~ 638 (791)
|+++++++...+..++||||+++|+|.+++... .+++..+..++.|++.||.||| +.+|+||||||+||+++.+
T Consensus 104 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~l~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dlkp~NIll~~~ 177 (321)
T 2c30_A 104 VVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV--RLNEEQIATVCEAVLQALAYLH----AQGVIHRDIKSDSILLTLD 177 (321)
T ss_dssp BCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTT
T ss_pred cceEEEEEEECCEEEEEEecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHH----HCCeecCCCCHHHEEECCC
Confidence 999999999999999999999999999998754 3899999999999999999999 6789999999999999999
Q ss_pred CcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHH
Q 003855 639 MAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWV 718 (791)
Q Consensus 639 ~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~ 718 (791)
+.+||+|||+++....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||..... ......+
T Consensus 178 ~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~--~~~~~~~ 253 (321)
T 2c30_A 178 GRVKLSDFGFCAQISKDVP--KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSP--VQAMKRL 253 (321)
T ss_dssp CCEEECCCTTCEECCSSSC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHH
T ss_pred CcEEEeeeeeeeecccCcc--ccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHH
Confidence 9999999999987654322 22345799999999999999999999999999999999999999975321 1111111
Q ss_pred HHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 719 KESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 719 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
........ .....++..+.+++.+||+.||++|||+.|+++
T Consensus 254 ~~~~~~~~---------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 254 RDSPPPKL---------------KNSHKVSPVLRDFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp HHSSCCCC---------------TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred hcCCCCCc---------------CccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 11111110 011134566889999999999999999999986
No 64
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.9e-41 Score=377.50 Aligned_cols=347 Identities=20% Similarity=0.211 Sum_probs=268.4
Q ss_pred cEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCcccccccccccccccccccccccc
Q 003855 40 RILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVM 119 (791)
Q Consensus 40 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 119 (791)
+.+++++++++ .+|..+. +++++|+|++|+|+++.+..|.++++|++|+|++|.++++.+..|.++++|+.|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 56777777776 7776543 4677777777777777777777777777777777777777777777777777777777
Q ss_pred ccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEcc
Q 003855 120 NNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLH 199 (791)
Q Consensus 120 n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 199 (791)
|+++.++... |.++++|++|+|++|++++. .+..|.++++|+.|+|+
T Consensus 90 n~l~~~~~~~--------~~~l~~L~~L~Ls~n~i~~~-------------------------~~~~~~~l~~L~~L~l~ 136 (477)
T 2id5_A 90 NRLKLIPLGV--------FTGLSNLTKLDISENKIVIL-------------------------LDYMFQDLYNLKSLEVG 136 (477)
T ss_dssp SCCCSCCTTS--------STTCTTCCEEECTTSCCCEE-------------------------CTTTTTTCTTCCEEEEC
T ss_pred CcCCccCccc--------ccCCCCCCEEECCCCccccC-------------------------ChhHccccccCCEEECC
Confidence 7777665433 67788888888888887743 33456677788888888
Q ss_pred CCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCC
Q 003855 200 SNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSI 279 (791)
Q Consensus 200 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 279 (791)
+|.+++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+.+.+
T Consensus 137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 216 (477)
T 2id5_A 137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216 (477)
T ss_dssp CTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE
T ss_pred CCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc
Confidence 88888777778888888888888888888666667788888888888888887777777888888888888888777666
Q ss_pred CccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCC
Q 003855 280 PSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLI 359 (791)
Q Consensus 280 ~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 359 (791)
+.......+|+.|++++|.++...+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..|..++
T Consensus 217 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 296 (477)
T 2id5_A 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296 (477)
T ss_dssp CTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCT
T ss_pred CcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcc
Confidence 66666666888888888888865556788888888888888888877777788888888888888888887788888888
Q ss_pred CCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCCCCCCcCCccccccCCccccCCC
Q 003855 360 SLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVKGSFKNFSVESFFGNYALCGPP 423 (791)
Q Consensus 360 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 423 (791)
+|+.|+|++|++++..+..|..+++|+.|++++|++.|.++..+.+.......+.++...|..|
T Consensus 297 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp TCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred cCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 8888888888888777778888888888888888888877654444444455667777777655
No 65
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.9e-41 Score=366.17 Aligned_cols=264 Identities=25% Similarity=0.403 Sum_probs=217.6
Q ss_pred hhccccccccCCCcceEEEEEEec--------CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhc-cCCccceeeeeeccC
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS--------DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNV-RHRNLIKILSSCSNP 569 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~ 569 (791)
.++|++.+.||+|+||.||+|+.. .+..||||++.... ....+.+.+|+++++++ +||||+++++++.+.
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 147 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence 468999999999999999999852 34579999987653 34557889999999999 999999999999999
Q ss_pred CeeeEEEecCCCCCHHHHHhhCC---------------CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeE
Q 003855 570 DFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNIL 634 (791)
Q Consensus 570 ~~~~lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nil 634 (791)
+..++||||+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+
T Consensus 148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dlkp~NIl 223 (382)
T 3tt0_A 148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA----SKKCIHRDLAARNVL 223 (382)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEE
T ss_pred CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH----hCCEecCCCCcceEE
Confidence 99999999999999999998653 34899999999999999999999 678999999999999
Q ss_pred eCCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcch
Q 003855 635 LDENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMS 713 (791)
Q Consensus 635 l~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~ 713 (791)
+++++.+||+|||+|+...............+|+.|+|||++.+..++.++|||||||++|||++ |..||..... ..
T Consensus 224 l~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~--~~ 301 (382)
T 3tt0_A 224 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV--EE 301 (382)
T ss_dssp ECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HH
T ss_pred EcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH--HH
Confidence 99999999999999987765443333444567889999999999999999999999999999999 9999875321 11
Q ss_pred HHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhccc
Q 003855 714 LRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLDD 786 (791)
Q Consensus 714 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~~ 786 (791)
..+.+...... ..+..++.++.+++.+||+.||++|||+.|+++.|+++.......
T Consensus 302 ~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~ 357 (382)
T 3tt0_A 302 LFKLLKEGHRM-----------------DKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQ 357 (382)
T ss_dssp HHHHHHTTCCC-----------------CCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHcCCCC-----------------CCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhcC
Confidence 22222111100 011234567889999999999999999999999999998765443
No 66
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=3.8e-42 Score=355.58 Aligned_cols=257 Identities=26% Similarity=0.376 Sum_probs=212.9
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEecC
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEFM 579 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 579 (791)
.++|++.+.||+|+||.||+|+.+++..||||++..... ..+.+.+|+.++++++||||+++++++.+....++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI 85 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence 468999999999999999999998888999999875532 2356889999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCcc
Q 003855 580 PNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDSV 659 (791)
Q Consensus 580 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~~ 659 (791)
++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....... .
T Consensus 86 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~ 160 (268)
T 3sxs_A 86 SNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLE----SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQY-V 160 (268)
T ss_dssp TTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH----HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCE-E
T ss_pred CCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH----HCCeecCCcCcceEEECCCCCEEEccCccceecchhhh-h
Confidence 999999999876666999999999999999999999 67899999999999999999999999999987654332 2
Q ss_pred eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhhH
Q 003855 660 TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREE 738 (791)
Q Consensus 660 ~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 738 (791)
......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||+.....+ ....+......
T Consensus 161 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--~~~~~~~~~~~-------------- 224 (268)
T 3sxs_A 161 SSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSE--VVLKVSQGHRL-------------- 224 (268)
T ss_dssp ECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHH--HHHHHHTTCCC--------------
T ss_pred cccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHH--HHHHHHcCCCC--------------
Confidence 2233456778999999988889999999999999999999 999997532211 11111110000
Q ss_pred HhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHH
Q 003855 739 QAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKV 781 (791)
Q Consensus 739 ~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~ 781 (791)
..+..++..+.+++.+||+.||++|||+.|+++.|+.++.
T Consensus 225 ---~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (268)
T 3sxs_A 225 ---YRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLRE 264 (268)
T ss_dssp ---CCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC
T ss_pred ---CCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhh
Confidence 0011234567899999999999999999999999998854
No 67
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.7e-41 Score=356.81 Aligned_cols=251 Identities=20% Similarity=0.314 Sum_probs=208.3
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEec
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEF 578 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 578 (791)
.++|++.+.||+|+||.||+|+.. +++.||+|++.... .....+.+|+.+++.++||||+++++++.+.+..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 468999999999999999999975 68899999987543 3345688999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCC--CCcEEEeeeccccccCCCC
Q 003855 579 MPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDE--NMAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 579 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~--~~~~kl~Dfgla~~~~~~~ 656 (791)
+++|+|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++. ++.+||+|||+++.+....
T Consensus 83 ~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH----~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~ 158 (321)
T 1tki_A 83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH----SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD 158 (321)
T ss_dssp CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC
T ss_pred CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCC
Confidence 9999999999877666999999999999999999999 678999999999999997 8899999999998875433
Q ss_pred CcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhh
Q 003855 657 DSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVR 736 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 736 (791)
......||+.|+|||++.+..++.++||||+||++|||++|..||...... ............. +
T Consensus 159 ---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-~~~~~i~~~~~~~------~----- 223 (321)
T 1tki_A 159 ---NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ-QIIENIMNAEYTF------D----- 223 (321)
T ss_dssp ---EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHHTCCCC------C-----
T ss_pred ---ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHH-HHHHHHHcCCCCC------C-----
Confidence 233456899999999999888999999999999999999999999753211 1111111110000 0
Q ss_pred hHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 737 EEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 737 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
......++.++.+++.+||+.||++|||+.|+++
T Consensus 224 ----~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 224 ----EEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp ----HHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred ----hhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0111245677889999999999999999999987
No 68
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=8.4e-42 Score=362.32 Aligned_cols=253 Identities=21% Similarity=0.329 Sum_probs=206.1
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 577 (791)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 368999999999999999999976 78999999986543 2334568899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCC
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGED 657 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~ 657 (791)
|+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.+.....
T Consensus 86 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH----~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 160 (323)
T 3tki_A 86 YCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLH----GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160 (323)
T ss_dssp CCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred cCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCccccccchHHEEEeCCCCEEEEEeeccceeccCCc
Confidence 999999999987654 3899999999999999999999 67899999999999999999999999999987643333
Q ss_pred cceeecccccccccCCCccCCCCC-CccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhh
Q 003855 658 SVTQTMTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVR 736 (791)
Q Consensus 658 ~~~~~~~~g~~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 736 (791)
........||+.|+|||++.+..+ +.++||||+||++|||++|+.||............|.......
T Consensus 161 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~------------ 228 (323)
T 3tki_A 161 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYL------------ 228 (323)
T ss_dssp ECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTS------------
T ss_pred ccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccC------------
Confidence 233344579999999999877665 7899999999999999999999986544333333332211100
Q ss_pred hHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 737 EEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 737 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.....++..+.+++.+||+.||++|||+.|+++
T Consensus 229 -----~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 229 -----NPWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp -----TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -----CccccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 111234566789999999999999999999975
No 69
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=4e-42 Score=365.93 Aligned_cols=258 Identities=25% Similarity=0.432 Sum_probs=205.7
Q ss_pred hhccccccccCCCcceEEEEEEec-CCc----EEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGT----DVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKA 573 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~----~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 573 (791)
.++|+..+.||+|+||.||+|++. +++ +||+|.+.... ....+.+.+|+.++++++||||+++++++.++. .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~ 92 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EE
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eE
Confidence 367999999999999999999964 444 36888775433 344578899999999999999999999998755 77
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccC
Q 003855 574 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLG 653 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~ 653 (791)
+|+||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+...
T Consensus 93 ~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH----~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~ 168 (327)
T 3poz_A 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE----DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168 (327)
T ss_dssp EEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHT
T ss_pred EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh----hCCeeCCCCChheEEECCCCCEEEccCcceeEcc
Confidence 999999999999999987777999999999999999999999 6789999999999999999999999999998876
Q ss_pred CCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcch
Q 003855 654 EGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDA 732 (791)
Q Consensus 654 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 732 (791)
............+|..|+|||++.+..++.++|||||||++|||+| |+.||...... .....+......
T Consensus 169 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~~~~~~~~-------- 238 (327)
T 3poz_A 169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSILEKGERL-------- 238 (327)
T ss_dssp TTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHHTTCCC--------
T ss_pred CCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHH--HHHHHHHcCCCC--------
Confidence 5544444444567889999999999999999999999999999999 99999764322 222222211110
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHH
Q 003855 733 NLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKV 781 (791)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~ 781 (791)
+.+..++..+.+++.+||+.||++||++.|+++.|+++..
T Consensus 239 ---------~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~ 278 (327)
T 3poz_A 239 ---------PQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp ---------CCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred ---------CCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 1112345678899999999999999999999999998864
No 70
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.8e-40 Score=355.24 Aligned_cols=278 Identities=24% Similarity=0.383 Sum_probs=211.1
Q ss_pred CChhHHHHHhhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHh--ccCCccceeeeeecc
Q 003855 491 TPYLDIQRATDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRN--VRHRNLIKILSSCSN 568 (791)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~ 568 (791)
.+........++|++.+.||+|+||.||+|+.. ++.||||++..... ..+..|.+++.. ++||||+++++++.+
T Consensus 27 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~ 102 (337)
T 3mdy_A 27 LPLLVQRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTEE---ASWFRETEIYQTVLMRHENILGFIAADIK 102 (337)
T ss_dssp SCHHHHTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEE
T ss_pred CCcccccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecccc---chhhhHHHHHHHHhhcCCCeeeEEEEEcc
Confidence 344555566789999999999999999999985 89999999865432 233445555554 489999999999877
Q ss_pred C----CeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccC----CCCCeEecCCCCCCeEeCCCCc
Q 003855 569 P----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGH----SSAPIIHCDLKPTNILLDENMA 640 (791)
Q Consensus 569 ~----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~----~~~~i~H~dlk~~Nill~~~~~ 640 (791)
. ...++||||+++|+|.+++.... +++..+..++.|++.||+|||..+ ...+|+||||||+||+++.++.
T Consensus 103 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~ 180 (337)
T 3mdy_A 103 GTGSWTQLYLITDYHENGSLYDYLKSTT--LDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGT 180 (337)
T ss_dssp SCGGGCEEEEEECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSC
T ss_pred CCCCCCceEEEEeccCCCcHHHHhhccC--CCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCC
Confidence 6 77899999999999999998754 899999999999999999999310 0118999999999999999999
Q ss_pred EEEeeeccccccCCCCCcc--eeecccccccccCCCccCCCCCCcc------ccHHhHHHHHHHHHhC----------CC
Q 003855 641 AHVSDFGISKLLGEGEDSV--TQTMTMATIGYMAPEYGSEGIVSAK------CDVYSYGVLLMETFTR----------KR 702 (791)
Q Consensus 641 ~kl~Dfgla~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~------~Dv~s~G~vl~elltg----------~~ 702 (791)
+||+|||+|+.+....... ......||+.|+|||++.+..++.+ +|||||||++|||+|| +.
T Consensus 181 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~ 260 (337)
T 3mdy_A 181 CCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQL 260 (337)
T ss_dssp EEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCC
T ss_pred EEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccc
Confidence 9999999998765433221 1224579999999999887766665 9999999999999999 66
Q ss_pred CCCccccCcchHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 703 PTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 703 p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
||............+............... ......++.++.+++.+||+.||++|||+.|+++.|+++.+.
T Consensus 261 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~ 332 (337)
T 3mdy_A 261 PYHDLVPSDPSYEDMREIVCIKKLRPSFPN--------RWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSES 332 (337)
T ss_dssp TTTTTSCSSCCHHHHHHHHTTSCCCCCCCG--------GGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred cHhhhcCCCCchhhhHHHHhhhccCccccc--------cchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhh
Confidence 666544444333333222211111111111 111236778899999999999999999999999999998764
No 71
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.5e-42 Score=371.93 Aligned_cols=261 Identities=24% Similarity=0.371 Sum_probs=211.6
Q ss_pred hhccccccccCCCcceEEEEEEec------CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS------DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFK 572 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 572 (791)
.++|++.+.||+|+||.||+|++. +++.||||++.... ......+.+|+.++++++||||+++++++.+....
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 367999999999999999999853 46789999986542 44456788999999999999999999999999999
Q ss_pred eEEEecCCCCCHHHHHhhCC------CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCC---cEEE
Q 003855 573 ALVLEFMPNGSLEKWLYSHN------YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENM---AAHV 643 (791)
Q Consensus 573 ~lv~e~~~~g~L~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~---~~kl 643 (791)
++||||+++|+|.+++.... ..+++..+..++.||+.||+||| +.+|+||||||+|||++.++ .+||
T Consensus 150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivHrDlkp~NIll~~~~~~~~~kL 225 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE----ENHFIHRDIAARNCLLTCPGPGRVAKI 225 (367)
T ss_dssp EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEESCSSTTCCEEE
T ss_pred EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH----hCCeeCCCCChhhEEEecCCCCceEEE
Confidence 99999999999999998532 34899999999999999999999 67899999999999999555 5999
Q ss_pred eeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhc
Q 003855 644 SDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESL 722 (791)
Q Consensus 644 ~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 722 (791)
+|||+|+...............||+.|+|||++.+..++.++|||||||++|||++ |..||..... ......+....
T Consensus 226 ~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~--~~~~~~i~~~~ 303 (367)
T 3l9p_A 226 GDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--QEVLEFVTSGG 303 (367)
T ss_dssp CCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHHHHHHHTTC
T ss_pred CCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHcCC
Confidence 99999986533332333344568899999999988899999999999999999998 9999976321 11222211111
Q ss_pred CCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHh
Q 003855 723 PHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKF 783 (791)
Q Consensus 723 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~ 783 (791)
. ...+..++..+.+++.+||+.||++||++.|+++.|+.+.+..
T Consensus 304 ~-----------------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~ 347 (367)
T 3l9p_A 304 R-----------------MDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP 347 (367)
T ss_dssp C-----------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred C-----------------CCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence 0 0111234566889999999999999999999999999986643
No 72
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=8.3e-41 Score=352.96 Aligned_cols=268 Identities=24% Similarity=0.300 Sum_probs=207.7
Q ss_pred HhhccccccccCCCcceEEEEEEecCCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
..++|++.+.||+|+||.||+|+..+|+.||+|++.... ....+.+.+|++++++++||||+++++++.++...++||
T Consensus 19 l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 98 (311)
T 3niz_A 19 LMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF 98 (311)
T ss_dssp SSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred hHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence 457899999999999999999999889999999986543 233467889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~ 656 (791)
||++ |+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+......
T Consensus 99 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH----~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~ 173 (311)
T 3niz_A 99 EFME-KDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCH----QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPV 173 (311)
T ss_dssp ECCS-EEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCC
T ss_pred cCCC-CCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCchHhEEECCCCCEEEccCcCceecCCCc
Confidence 9997 5899999877777999999999999999999999 6789999999999999999999999999998765332
Q ss_pred CcceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcC---CChhhhcch
Q 003855 657 DSVTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLP---HGLTEVVDA 732 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~ 732 (791)
. ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+ .+......... .......+.
T Consensus 174 ~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~ 250 (311)
T 3niz_A 174 R--SYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDD-QLPKIFSILGTPNPREWPQVQEL 250 (311)
T ss_dssp C-----CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTT-HHHHHHHHHCCCCTTTSGGGTTS
T ss_pred c--cccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHHCCCChHHhhhhhcc
Confidence 2 2333568999999998765 568999999999999999999999998643332 22222221111 111111000
Q ss_pred hhh--------hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 733 NLV--------REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 733 ~~~--------~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
... ...........++.++.+++.+||+.||++|||+.|+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 251 PLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp HHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred chhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 000 000000111234567889999999999999999999986
No 73
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=1.8e-41 Score=359.06 Aligned_cols=264 Identities=23% Similarity=0.354 Sum_probs=218.1
Q ss_pred hhccccccccCCCcceEEEEEEe------cCCcEEEEEEeehhh-hHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI------SDGTDVAIKIFNLQL-ERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDF 571 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~ 571 (791)
.++|+..+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+.+++++ +||||+++++++.+++.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~ 101 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP 101 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence 46899999999999999999985 356889999997553 23457789999999999 99999999999999999
Q ss_pred eeEEEecCCCCCHHHHHhhCCC-----------------CCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeE
Q 003855 572 KALVLEFMPNGSLEKWLYSHNY-----------------FLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNIL 634 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~~-----------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nil 634 (791)
.++||||+++|+|.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+
T Consensus 102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dlkp~Nil 177 (313)
T 1t46_A 102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA----SKNCIHRDLAARNIL 177 (313)
T ss_dssp CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEE
T ss_pred cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH----HCCeecCCCccceEE
Confidence 9999999999999999986542 3899999999999999999999 678999999999999
Q ss_pred eCCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcch
Q 003855 635 LDENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMS 713 (791)
Q Consensus 635 l~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~ 713 (791)
++.++.+||+|||+++...............+|+.|+|||.+.+..++.++||||||+++|||+| |+.||...... ..
T Consensus 178 ~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~-~~ 256 (313)
T 1t46_A 178 LTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVD-SK 256 (313)
T ss_dssp EETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSS-HH
T ss_pred EcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccch-hH
Confidence 99999999999999988765544333444567889999999888899999999999999999999 99999764322 12
Q ss_pred HHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcc
Q 003855 714 LRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLD 785 (791)
Q Consensus 714 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~ 785 (791)
....+....... .+..++..+.+++.+||+.||++|||+.|+++.|+++.....+
T Consensus 257 ~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 311 (313)
T 1t46_A 257 FYKMIKEGFRML-----------------SPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTN 311 (313)
T ss_dssp HHHHHHHTCCCC-----------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhccCCCCC-----------------CcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHhhc
Confidence 222222111110 0113456788999999999999999999999999998876543
No 74
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=6.1e-42 Score=367.71 Aligned_cols=264 Identities=24% Similarity=0.380 Sum_probs=213.6
Q ss_pred HhhccccccccCCCcceEEEEEEec------CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCe
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS------DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDF 571 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 571 (791)
..++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.++++++||||+++++++.+.+.
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 124 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP 124 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCc
Confidence 4578999999999999999999974 34889999997653 3446788999999999999999999999999999
Q ss_pred eeEEEecCCCCCHHHHHhhCC-----------------------CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCC
Q 003855 572 KALVLEFMPNGSLEKWLYSHN-----------------------YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDL 628 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dl 628 (791)
.++||||+++|+|.+++.... ..+++.+++.++.||++||.||| +.+|+||||
T Consensus 125 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH----~~~ivH~Dl 200 (343)
T 1luf_A 125 MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS----ERKFVHRDL 200 (343)
T ss_dssp CEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCC
T ss_pred eEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH----hCCeecCCC
Confidence 999999999999999998642 45899999999999999999999 678999999
Q ss_pred CCCCeEeCCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCcc
Q 003855 629 KPTNILLDENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEM 707 (791)
Q Consensus 629 k~~Nill~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~ 707 (791)
||+||+++.++.+||+|||+++...............+|+.|+|||.+.+..++.++||||||+++|||+| |..||...
T Consensus 201 kp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~ 280 (343)
T 1luf_A 201 ATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM 280 (343)
T ss_dssp SGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred CcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCC
Confidence 99999999999999999999987654333333344568899999999888889999999999999999999 99999753
Q ss_pred ccCcchHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcc
Q 003855 708 FTGEMSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLD 785 (791)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~ 785 (791)
... .....+...... ..+..++..+.+++.+||+.||++||++.|+++.|+++..+...
T Consensus 281 ~~~--~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~~ 339 (343)
T 1luf_A 281 AHE--EVIYYVRDGNIL-----------------ACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAEG 339 (343)
T ss_dssp CHH--HHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC----
T ss_pred ChH--HHHHHHhCCCcC-----------------CCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhhh
Confidence 211 111111110000 01123456788999999999999999999999999998766543
No 75
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=4.3e-41 Score=357.75 Aligned_cols=248 Identities=23% Similarity=0.269 Sum_probs=205.3
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|+..+.||+|+||.||+|+.+ +|+.||+|++.... ....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 468999999999999999999975 78999999997653 33456788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+++|+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+|+.....
T Consensus 84 ~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH----~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 158 (337)
T 1o6l_A 84 MEYANGGELFFHLSRER-VFTEERARFYGAEIVSALEYLH----SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISD 158 (337)
T ss_dssp EECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCT
T ss_pred EeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeecCcCCHHHEEECCCCCEEEeeccchhhcccC
Confidence 99999999999998654 3899999999999999999999 678999999999999999999999999999864332
Q ss_pred CCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 656 EDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
.. .....+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ....+.+.....
T Consensus 159 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~~~~~i~~~~~------------ 222 (337)
T 1o6l_A 159 GA--TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--ERLFELILMEEI------------ 222 (337)
T ss_dssp TC--CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCCC------------
T ss_pred CC--cccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH--HHHHHHHHcCCC------------
Confidence 21 23345799999999999999999999999999999999999999975321 111111111000
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCC-----CHHHHHH
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRI-----NVTDAAA 774 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RP-----t~~ev~~ 774 (791)
..+..++.++.+++.+||+.||++|| ++.|+++
T Consensus 223 ------~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 223 ------RFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp ------CCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred ------CCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 00113456678999999999999999 8998875
No 76
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=2.3e-41 Score=365.72 Aligned_cols=272 Identities=14% Similarity=0.141 Sum_probs=210.4
Q ss_pred HhhccccccccCCCcceEEEEEEecC------CcEEEEEEeehhhhHH-----------HHHHHHHHHHHHhccCCccce
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTISD------GTDVAIKIFNLQLERA-----------FRSFDSECEVLRNVRHRNLIK 561 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~~-----------~~~~~~e~~~l~~l~h~niv~ 561 (791)
..++|++.+.||+|+||.||+|.+.. ++.||||++....... ...+..|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 34689999999999999999998754 4789999986543211 122345666777788999999
Q ss_pred eeeeeccC----CeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeC-
Q 003855 562 ILSSCSNP----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLD- 636 (791)
Q Consensus 562 l~~~~~~~----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~- 636 (791)
+++++... ...++||||+ +|+|.+++......+++..+..++.||+.||+||| +.+|+||||||+|||++
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH----~~~iiHrDlkp~Nill~~ 187 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIH----EHEYVHGDIKASNLLLNY 187 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEEES
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH----HCCeEEecCCHHHEEEec
Confidence 99998654 4579999999 99999999987667999999999999999999999 67899999999999999
Q ss_pred -CCCcEEEeeeccccccCCCCCcc-----eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccC
Q 003855 637 -ENMAAHVSDFGISKLLGEGEDSV-----TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTG 710 (791)
Q Consensus 637 -~~~~~kl~Dfgla~~~~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~ 710 (791)
.++.+||+|||+|+.+....... ......||+.|+|||++.+..++.++|||||||++|||+||+.||.+....
T Consensus 188 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~ 267 (364)
T 3op5_A 188 KNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD 267 (364)
T ss_dssp SCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC
T ss_pred CCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC
Confidence 89999999999998765432111 112345999999999999999999999999999999999999999864322
Q ss_pred cchHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhc
Q 003855 711 EMSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFL 784 (791)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~ 784 (791)
. ....+..........+.+++.+. ...++.++.+++..||+.+|++||++.++++.|+++.....
T Consensus 268 ~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~ 332 (364)
T 3op5_A 268 P-KYVRDSKIRYRENIASLMDKCFP--------AANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIG 332 (364)
T ss_dssp H-HHHHHHHHHHHHCHHHHHHHHSC--------TTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred H-HHHHHHHHHhhhhHHHHHHHhcc--------cccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcC
Confidence 2 22222221111112222221110 12346788999999999999999999999999999877643
No 77
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=6.7e-42 Score=375.43 Aligned_cols=259 Identities=22% Similarity=0.276 Sum_probs=208.0
Q ss_pred HHHHHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhh---HHHHHHHHHHHHHHhccCCccceeeeeeccCC
Q 003855 495 DIQRATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLE---RAFRSFDSECEVLRNVRHRNLIKILSSCSNPD 570 (791)
Q Consensus 495 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~ 570 (791)
+++...++|++.+.||+|+||.||+|+.+ +++.||+|++..... ...+.+.+|+.++..++||||+++++++.+.+
T Consensus 68 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~ 147 (437)
T 4aw2_A 68 QMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDN 147 (437)
T ss_dssp HHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSS
T ss_pred cccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCC
Confidence 44455689999999999999999999976 588999999975431 22334788999999999999999999999999
Q ss_pred eeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 571 FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 571 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
..++||||+++|+|.+++......+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+
T Consensus 148 ~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH----~~giiHrDLKp~NILl~~~g~vkL~DFGla~ 223 (437)
T 4aw2_A 148 NLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVH----QLHYVHRDIKPDNILMDMNGHIRLADFGSCL 223 (437)
T ss_dssp EEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred EEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH----hCCeEecccCHHHeeEcCCCCEEEcchhhhh
Confidence 999999999999999999876566999999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCcceeecccccccccCCCccC-----CCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC
Q 003855 651 LLGEGEDSVTQTMTMATIGYMAPEYGS-----EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG 725 (791)
Q Consensus 651 ~~~~~~~~~~~~~~~g~~~y~aPE~~~-----~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 725 (791)
....... ......+||++|+|||++. .+.++.++|||||||++|||++|+.||......+ .+...+....
T Consensus 224 ~~~~~~~-~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~-~~~~i~~~~~--- 298 (437)
T 4aw2_A 224 KLMEDGT-VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVE-TYGKIMNHKE--- 298 (437)
T ss_dssp ECCTTSC-EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHTHHH---
T ss_pred hcccCCC-cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhH-HHHhhhhccc---
Confidence 7654332 2233457999999999876 5679999999999999999999999997532111 1111110000
Q ss_pred hhhhcchhhhhhHHhhHH-HHHHHHHHHHHHhhccccCCCC--CCCHHHHHH
Q 003855 726 LTEVVDANLVREEQAFSA-KMDCILSIMDLALDCCIESPDM--RINVTDAAA 774 (791)
Q Consensus 726 ~~~~~d~~~~~~~~~~~~-~~~~~~~l~~li~~cl~~~P~~--RPt~~ev~~ 774 (791)
....+. ...++.++.+++.+|+..+|++ ||++.|+++
T Consensus 299 ------------~~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 299 ------------RFQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp ------------HCCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred ------------cccCCcccccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 000000 0124566789999999988888 999999875
No 78
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=2.1e-41 Score=354.02 Aligned_cols=259 Identities=26% Similarity=0.445 Sum_probs=197.8
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 577 (791)
.++|++.+.||+|+||.||+|+.. ..||||++.... ....+.+.+|+.++++++||||+++++++. ....++|||
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e 99 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQLAIVTQ 99 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc-CCccEEEEE
Confidence 468999999999999999999874 359999986543 445678899999999999999999999764 456889999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCC
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGED 657 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~ 657 (791)
|+++++|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 100 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH----~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 175 (289)
T 3og7_A 100 WCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH----AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSG 175 (289)
T ss_dssp CCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEEETTTEEEECCCC----------
T ss_pred ecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH----hCCcccccCccceEEECCCCCEEEccceeccccccccc
Confidence 99999999999877777999999999999999999999 67899999999999999999999999999987654333
Q ss_pred cceeecccccccccCCCccC---CCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHh-cCCChhhhcchh
Q 003855 658 SVTQTMTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKES-LPHGLTEVVDAN 733 (791)
Q Consensus 658 ~~~~~~~~g~~~y~aPE~~~---~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~ 733 (791)
........||+.|+|||.+. +..++.++||||||+++|||++|+.||......+ .....+... .......
T Consensus 176 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~----- 249 (289)
T 3og7_A 176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIEMVGRGSLSPDLSK----- 249 (289)
T ss_dssp --------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHH-HHHHHHHHTSCCCCTTS-----
T ss_pred cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHH-HHHHHhcccccCcchhh-----
Confidence 33334456899999999876 6678899999999999999999999997643322 122222211 1111110
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHH
Q 003855 734 LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIK 780 (791)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~ 780 (791)
....++..+.+++.+||+.||++||++.|+++.|+++.
T Consensus 250 ---------~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~ 287 (289)
T 3og7_A 250 ---------VRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELA 287 (289)
T ss_dssp ---------SCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred ---------ccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence 01135577889999999999999999999999999874
No 79
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=1.7e-41 Score=359.52 Aligned_cols=260 Identities=28% Similarity=0.427 Sum_probs=215.4
Q ss_pred hhccccccccCCCcceEEEEEEe------cCCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI------SDGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFK 572 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 572 (791)
.++|.+.+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+.++++++||||+++++++.+.+..
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 101 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL 101 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence 47899999999999999999985 245789999987543 44567889999999999999999999999999999
Q ss_pred eEEEecCCCCCHHHHHhhCC-----------------------CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCC
Q 003855 573 ALVLEFMPNGSLEKWLYSHN-----------------------YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLK 629 (791)
Q Consensus 573 ~lv~e~~~~g~L~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk 629 (791)
++||||+++|+|.+++.... ..+++.++..++.|+++||.||| +.+|+|||||
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~ivH~dik 177 (314)
T 2ivs_A 102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA----EMKLVHRDLA 177 (314)
T ss_dssp EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH----HTTEECCCCS
T ss_pred EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH----HCCCcccccc
Confidence 99999999999999998643 23789999999999999999999 6789999999
Q ss_pred CCCeEeCCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccc
Q 003855 630 PTNILLDENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMF 708 (791)
Q Consensus 630 ~~Nill~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~ 708 (791)
|+||++++++.+||+|||+++...............+++.|+|||.+.+..++.++|||||||++|||++ |+.||....
T Consensus 178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 257 (314)
T 2ivs_A 178 ARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP 257 (314)
T ss_dssp GGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred hheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999987755443333344467889999999988889999999999999999999 999997643
Q ss_pred cCcchHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 709 TGEMSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
.. .....+...... ..+..++..+.+++.+||+.||++||++.|+++.|+++..+
T Consensus 258 ~~--~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 312 (314)
T 2ivs_A 258 PE--RLFNLLKTGHRM-----------------ERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK 312 (314)
T ss_dssp GG--GHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HH--HHHHHhhcCCcC-----------------CCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence 22 222222211110 01123456788999999999999999999999999998654
No 80
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=1.6e-41 Score=353.94 Aligned_cols=258 Identities=24% Similarity=0.363 Sum_probs=210.3
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEecC
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEFM 579 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 579 (791)
.++|++.+.||+|+||.||+|.+.++..||||++..... ..+.+.+|++++++++||||+++++++.+....++||||+
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 101 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM 101 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCC
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEecc
Confidence 468999999999999999999998888999999975532 2356889999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCcc
Q 003855 580 PNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDSV 659 (791)
Q Consensus 580 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~~ 659 (791)
++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...... ..
T Consensus 102 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~-~~ 176 (283)
T 3gen_A 102 ANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE----SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-YT 176 (283)
T ss_dssp TTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH-HH
T ss_pred CCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH----HCCccCCCCccceEEEcCCCCEEEccccccccccccc-cc
Confidence 999999999875556999999999999999999999 6789999999999999999999999999998764322 11
Q ss_pred eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhhH
Q 003855 660 TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREE 738 (791)
Q Consensus 660 ~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 738 (791)
......+|+.|+|||.+.+..++.++||||+|+++|||+| |+.||...... .....+.......
T Consensus 177 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~--~~~~~~~~~~~~~------------- 241 (283)
T 3gen_A 177 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS--ETAEHIAQGLRLY------------- 241 (283)
T ss_dssp STTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--HHHHHHHTTCCCC-------------
T ss_pred cccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChh--HHHHHHhcccCCC-------------
Confidence 2223346788999999988889999999999999999998 99999763221 1111111111000
Q ss_pred HhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 739 QAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 739 ~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
.+..++..+.+++.+||+.||++|||+.|+++.|.++...
T Consensus 242 ----~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~ 281 (283)
T 3gen_A 242 ----RPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 281 (283)
T ss_dssp ----CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ----CCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence 0112345678999999999999999999999999998754
No 81
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=8.2e-41 Score=358.85 Aligned_cols=252 Identities=22% Similarity=0.298 Sum_probs=206.5
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhH------HHHHHHHHHHHHHhccCCccceeeeeeccCCe
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLER------AFRSFDSECEVLRNVRHRNLIKILSSCSNPDF 571 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 571 (791)
..+.|++.+.||+|+||.||+|+.. +|+.||+|++...... ..+.+.+|+.++++++||||+++++++.+...
T Consensus 10 ~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~ 89 (361)
T 2yab_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTD 89 (361)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred hhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCE
Confidence 3467999999999999999999975 7899999998754321 34678899999999999999999999999999
Q ss_pred eeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCC----cEEEeeec
Q 003855 572 KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENM----AAHVSDFG 647 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~----~~kl~Dfg 647 (791)
.++||||+++|+|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+||+++.++ .+||+|||
T Consensus 90 ~~lv~e~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH----~~givHrDlkp~NIll~~~~~~~~~vkl~DFG 164 (361)
T 2yab_A 90 VVLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLH----TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG 164 (361)
T ss_dssp EEEEEECCCSCBHHHHHTTCS-CCBHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEESCTTSSSCCEEECCCS
T ss_pred EEEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCCHHHEEEeCCCCCccCEEEEecC
Confidence 999999999999999997654 4899999999999999999999 67899999999999998877 79999999
Q ss_pred cccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChh
Q 003855 648 ISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLT 727 (791)
Q Consensus 648 la~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 727 (791)
+++....... ....+||+.|+|||++.+..++.++||||+||++|||++|..||.+.... .....+......
T Consensus 165 ~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~--~~~~~i~~~~~~--- 236 (361)
T 2yab_A 165 LAHEIEDGVE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ--ETLANITAVSYD--- 236 (361)
T ss_dssp SCEECCTTCC---CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH--HHHHHHHTTCCC---
T ss_pred CceEcCCCCc---cccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhcCCC---
Confidence 9987754322 23356999999999999889999999999999999999999999753211 111111110000
Q ss_pred hhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 728 EVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 728 ~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.+. .....++..+.+++.+||..||++|||+.|+++
T Consensus 237 --~~~---------~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 237 --FDE---------EFFSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp --CCH---------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred --CCc---------hhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 000 111234567889999999999999999999984
No 82
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=1.6e-40 Score=349.14 Aligned_cols=266 Identities=15% Similarity=0.137 Sum_probs=214.8
Q ss_pred hhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhhhHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCeeeEEEe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQLERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 577 (791)
.++|++.+.||+|+||.||+|+. .+++.||||++..... .+.+.+|+.+++++ +|++++++++++.+....++|||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e 86 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD--APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 86 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT--SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc--cHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence 46799999999999999999996 5799999999864432 24577899999999 79999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCc-----EEEeeecccccc
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMA-----AHVSDFGISKLL 652 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~-----~kl~Dfgla~~~ 652 (791)
|+ +++|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+|+..
T Consensus 87 ~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~ 161 (298)
T 1csn_A 87 LL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH----EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFY 161 (298)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH----TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEES
T ss_pred ec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH----hCCEecCCCCHHHEEeccCCCCCCCeEEEEECcccccc
Confidence 99 99999999977667999999999999999999999 779999999999999987776 999999999876
Q ss_pred CCCCCc-----ceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChh
Q 003855 653 GEGEDS-----VTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLT 727 (791)
Q Consensus 653 ~~~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 727 (791)
...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||......... ..+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~--~~~~~------- 232 (298)
T 1csn_A 162 RDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNK--QKYER------- 232 (298)
T ss_dssp BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHH--HHHHH-------
T ss_pred ccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccH--HHHHH-------
Confidence 543321 1233456999999999999999999999999999999999999999864322111 00000
Q ss_pred hhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhc
Q 003855 728 EVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFL 784 (791)
Q Consensus 728 ~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~ 784 (791)
+....... ........++..+.+++.+||+.||++||++.++++.|+++..+..
T Consensus 233 -~~~~~~~~--~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~ 286 (298)
T 1csn_A 233 -IGEKKQST--PLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLN 286 (298)
T ss_dssp -HHHHHHHS--CHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred -HHhhccCc--cHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcC
Confidence 00000000 0001112456788999999999999999999999999999987654
No 83
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.7e-41 Score=352.70 Aligned_cols=260 Identities=22% Similarity=0.382 Sum_probs=206.9
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehh---hhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQ---LERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|++.+.||+|+||.||+|+.. +++.||+|++... .....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 467999999999999999999964 7899999998543 234567889999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 90 ~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 164 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESHG-PLSVDTAINFTNQILDGIKHAH----DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSET 164 (294)
T ss_dssp EECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC---
T ss_pred EeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCCHHHEEECCCCCEEEEeCCCccccccc
Confidence 99999999999998654 4899999999999999999999 678999999999999999999999999999876443
Q ss_pred CCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 656 EDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
.. .......||+.|+|||.+.+..++.++||||+|+++|||+||+.||.+..... .... ........ .
T Consensus 165 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~----~~~~-~~~~~~~~-----~- 232 (294)
T 4eqm_A 165 SL-TQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVS----IAIK-HIQDSVPN-----V- 232 (294)
T ss_dssp -----------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHH----HHHH-HHSSCCCC-----H-
T ss_pred cc-cccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH----HHHH-HhhccCCC-----c-
Confidence 22 12233468999999999999999999999999999999999999997632211 1111 11111000 0
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCC-CHHHHHHHHHHHH
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRI-NVTDAAAKLKKIK 780 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RP-t~~ev~~~L~~~~ 780 (791)
.......++..+.+++.+|++.||++|| ++.++.+.|..+.
T Consensus 233 ----~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~ 274 (294)
T 4eqm_A 233 ----TTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVL 274 (294)
T ss_dssp ----HHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSS
T ss_pred ----chhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHH
Confidence 0011123567788999999999999999 8999999988764
No 84
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.2e-41 Score=359.88 Aligned_cols=265 Identities=22% Similarity=0.360 Sum_probs=212.4
Q ss_pred HhhccccccccCCCcceEEEEEEe------cCCcEEEEEEeehhh-hHHHHHHHHHHHHHHhc-cCCccceeeeeeccCC
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTI------SDGTDVAIKIFNLQL-ERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPD 570 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~ 570 (791)
..++|++.+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+.+++++ +||||+++++++...+
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 122 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG 122 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence 357899999999999999999986 246689999987543 33456789999999999 8999999999999999
Q ss_pred eeeEEEecCCCCCHHHHHhhCCC----------------------CCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCC
Q 003855 571 FKALVLEFMPNGSLEKWLYSHNY----------------------FLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDL 628 (791)
Q Consensus 571 ~~~lv~e~~~~g~L~~~l~~~~~----------------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dl 628 (791)
..++||||+++|+|.+++..... .+++..+..++.|++.||+||| +.+|+||||
T Consensus 123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~ivH~Di 198 (344)
T 1rjb_A 123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE----FKSCVHRDL 198 (344)
T ss_dssp SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH----HTTEEETTC
T ss_pred ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH----hCCcccCCC
Confidence 99999999999999999986532 3789999999999999999999 678999999
Q ss_pred CCCCeEeCCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCcc
Q 003855 629 KPTNILLDENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEM 707 (791)
Q Consensus 629 k~~Nill~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~ 707 (791)
||+||+++.++.+||+|||+++...............+|+.|+|||.+.+..++.++|||||||++|||+| |..||...
T Consensus 199 kp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~ 278 (344)
T 1rjb_A 199 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI 278 (344)
T ss_dssp SGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred ChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccC
Confidence 99999999999999999999987655444334444567889999999988899999999999999999998 99999764
Q ss_pred ccCcchHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcc
Q 003855 708 FTGEMSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLD 785 (791)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~ 785 (791)
... ......+...... ..+..++..+.+++.+||+.||++||++.|+++.|+.+.....+
T Consensus 279 ~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~ 338 (344)
T 1rjb_A 279 PVD-ANFYKLIQNGFKM-----------------DQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAEE 338 (344)
T ss_dssp CCS-HHHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-----
T ss_pred CcH-HHHHHHHhcCCCC-----------------CCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHHHH
Confidence 322 2222222221111 01113456788999999999999999999999999998665443
No 85
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=3.1e-41 Score=374.46 Aligned_cols=252 Identities=28% Similarity=0.431 Sum_probs=208.8
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCC-eeeEEEec
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPD-FKALVLEF 578 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-~~~lv~e~ 578 (791)
.++|++.+.||+|+||.||+|.+. ++.||||+++... ..+.+.+|+.++++++||||+++++++.+.. ..++||||
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~ 268 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 268 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEEC
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEe
Confidence 467899999999999999999985 7899999997553 3467899999999999999999999986654 78999999
Q ss_pred CCCCCHHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCC
Q 003855 579 MPNGSLEKWLYSHNY-FLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGED 657 (791)
Q Consensus 579 ~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~ 657 (791)
+++|+|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+|||+++++.+||+|||+++......
T Consensus 269 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH----~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~- 343 (450)
T 1k9a_A 269 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE----GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ- 343 (450)
T ss_dssp CTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC----
T ss_pred cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH----hCCeeCCCCCHhhEEECCCCCEEEeeCCCcccccccc-
Confidence 999999999986543 4799999999999999999999 6789999999999999999999999999998643221
Q ss_pred cceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhh
Q 003855 658 SVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVR 736 (791)
Q Consensus 658 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 736 (791)
....++..|+|||.+.+..++.++|||||||++|||+| |+.||......+ ....+....
T Consensus 344 ----~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~~~-------------- 403 (450)
T 1k9a_A 344 ----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--VVPRVEKGY-------------- 403 (450)
T ss_dssp -------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTT--HHHHHHTTC--------------
T ss_pred ----cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCC--------------
Confidence 12356889999999999999999999999999999998 999997643222 111111100
Q ss_pred hHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 737 EEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 737 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
..+.+..++..+.++|.+||+.||++|||+.++++.|+.+...
T Consensus 404 ---~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 404 ---KMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp ---CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred ---CCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 0111234667889999999999999999999999999998765
No 86
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=1.9e-40 Score=365.44 Aligned_cols=254 Identities=21% Similarity=0.292 Sum_probs=206.4
Q ss_pred HHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeE
Q 003855 498 RATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 498 ~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 574 (791)
...++|++.+.||+|+||.||+|... +|+.||+|++.... ....+.+.+|+.++++++||||+++++++.+++..++
T Consensus 8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l 87 (444)
T 3soa_A 8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL 87 (444)
T ss_dssp HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEE
T ss_pred cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEE
Confidence 45678999999999999999999864 78999999987543 3445678999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeC---CCCcEEEeeeccccc
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLD---ENMAAHVSDFGISKL 651 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~---~~~~~kl~Dfgla~~ 651 (791)
||||+++|+|.+++..... +++..+..++.||+.||.||| +.+|+||||||+||+++ .++.+||+|||+|+.
T Consensus 88 v~E~~~gg~L~~~i~~~~~-~~e~~~~~i~~qil~aL~~lH----~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~ 162 (444)
T 3soa_A 88 IFDLVTGGELFEDIVAREY-YSEADASHCIQQILEAVLHCH----QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIE 162 (444)
T ss_dssp EECCCBCCBHHHHHHHCSC-CCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBC
T ss_pred EEEeCCCCCHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH----HCCccccCCCHHHEEEeccCCCCcEEEccCceeEE
Confidence 9999999999999987654 899999999999999999999 67899999999999998 568899999999987
Q ss_pred cCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcc
Q 003855 652 LGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVD 731 (791)
Q Consensus 652 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d 731 (791)
...... ......||+.|+|||++.+..++.++||||+||++|||++|..||.+... ......+........
T Consensus 163 ~~~~~~--~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~--~~~~~~i~~~~~~~~----- 233 (444)
T 3soa_A 163 VEGEQQ--AWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQ--HRLYQQIKAGAYDFP----- 233 (444)
T ss_dssp CCTTCC--BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHTCCCCC-----
T ss_pred ecCCCc--eeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccH--HHHHHHHHhCCCCCC-----
Confidence 654322 22345799999999999998999999999999999999999999965321 111111111100000
Q ss_pred hhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 732 ANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.+....++.++.+++.+||+.||++|||+.|+++
T Consensus 234 ---------~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 234 ---------SPEWDTVTPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp ---------TTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred ---------ccccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 0011234567889999999999999999999986
No 87
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=1.5e-41 Score=361.29 Aligned_cols=262 Identities=23% Similarity=0.437 Sum_probs=196.3
Q ss_pred HhhccccccccCCCcceEEEEEEecC-C---cEEEEEEeehh--hhHHHHHHHHHHHHHHhccCCccceeeeeeccCCee
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTISD-G---TDVAIKIFNLQ--LERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFK 572 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~~-~---~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 572 (791)
..++|++.+.||+|+||.||+|+... + ..||||++... .....+.+.+|++++++++||||+++++++......
T Consensus 21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 100 (323)
T 3qup_A 21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK 100 (323)
T ss_dssp C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence 34689999999999999999998653 3 27999998754 344567899999999999999999999999776655
Q ss_pred ------eEEEecCCCCCHHHHHhhC-----CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcE
Q 003855 573 ------ALVLEFMPNGSLEKWLYSH-----NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAA 641 (791)
Q Consensus 573 ------~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~ 641 (791)
++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||++++++.+
T Consensus 101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH----~~~ivH~Dikp~NIli~~~~~~ 176 (323)
T 3qup_A 101 GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS----SRNFIHRDLAARNCMLAEDMTV 176 (323)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECTTSCE
T ss_pred cCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH----cCCcccCCCCcceEEEcCCCCE
Confidence 8999999999999999742 224899999999999999999999 6789999999999999999999
Q ss_pred EEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHH
Q 003855 642 HVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKE 720 (791)
Q Consensus 642 kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~ 720 (791)
||+|||+|+...............+++.|+|||.+.+..++.++|||||||++|||++ |+.||...... .....+..
T Consensus 177 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~~~~~ 254 (323)
T 3qup_A 177 CVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENA--EIYNYLIG 254 (323)
T ss_dssp EECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHHT
T ss_pred EEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChH--HHHHHHhc
Confidence 9999999987655443333344557889999999988899999999999999999999 89999764322 11111111
Q ss_pred hcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHh
Q 003855 721 SLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKF 783 (791)
Q Consensus 721 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~ 783 (791)
... ...+..++..+.+++.+||+.||++|||+.|+++.|+++....
T Consensus 255 ~~~-----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~ 300 (323)
T 3qup_A 255 GNR-----------------LKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHL 300 (323)
T ss_dssp TCC-----------------CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred CCC-----------------CCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 100 0111234567889999999999999999999999999986543
No 88
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=1.2e-40 Score=360.88 Aligned_cols=252 Identities=24% Similarity=0.315 Sum_probs=208.4
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEec
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEF 578 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 578 (791)
.++|++.+.||+|+||.||+|... +|+.||+|++..........+.+|+.++++++||||+++++++.+....++||||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~ 129 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence 468999999999999999999975 7899999999766555556789999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCC--CCcEEEeeeccccccCCCC
Q 003855 579 MPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDE--NMAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 579 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~--~~~~kl~Dfgla~~~~~~~ 656 (791)
+++|+|.+++......+++..+..++.||+.||+||| +.+|+||||||+||+++. ++.+||+|||+|+......
T Consensus 130 ~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~ 205 (387)
T 1kob_A 130 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH----EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE 205 (387)
T ss_dssp CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS
T ss_pred CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH----hCCeeecccchHHeEEecCCCCceEEEecccceecCCCc
Confidence 9999999999877666999999999999999999999 678999999999999974 5789999999998875432
Q ss_pred CcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhh
Q 003855 657 DSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVR 736 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 736 (791)
. .....||+.|+|||++.+..++.++|||||||++|||++|+.||..... ......+...... .+.
T Consensus 206 ~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~--~~~~~~i~~~~~~-----~~~---- 271 (387)
T 1kob_A 206 I---VKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD--LETLQNVKRCDWE-----FDE---- 271 (387)
T ss_dssp C---EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHHHHHHCCCC-----CCS----
T ss_pred c---eeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH--HHHHHHHHhCCCC-----CCc----
Confidence 2 2334689999999999999999999999999999999999999975321 1111111111000 000
Q ss_pred hHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 737 EEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 737 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.....++.++.+++.+||+.||++|||+.|+++
T Consensus 272 -----~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 272 -----DAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp -----STTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred -----cccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence 001134567889999999999999999999986
No 89
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=1.5e-40 Score=358.03 Aligned_cols=253 Identities=23% Similarity=0.335 Sum_probs=206.8
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
..++|++.+.||+|+||.||+|... +|+.||+|++.... ....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 106 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 106 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 4578999999999999999999975 78999999997543 34456789999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCC---CcEEEeeecccccc
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDEN---MAAHVSDFGISKLL 652 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~---~~~kl~Dfgla~~~ 652 (791)
|||+++|+|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+||+++.+ +.+||+|||+++..
T Consensus 107 ~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH----~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~ 181 (362)
T 2bdw_A 107 FDLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCH----SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV 181 (362)
T ss_dssp ECCCCSCBHHHHHTTCS-CCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCC
T ss_pred EecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeEeccCchHHEEEecCCCCCCEEEeecCcceEe
Confidence 99999999999998654 4899999999999999999999 6789999999999999865 45999999999876
Q ss_pred CCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcch
Q 003855 653 GEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDA 732 (791)
Q Consensus 653 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 732 (791)
..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||..... ......+........
T Consensus 182 ~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~--~~~~~~i~~~~~~~~------ 250 (362)
T 2bdw_A 182 NDSEA---WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ--HRLYAQIKAGAYDYP------ 250 (362)
T ss_dssp TTCCS---CCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTCCCCC------
T ss_pred cCCcc---cccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHhCCCCCC------
Confidence 54322 2335799999999999998999999999999999999999999975321 111111111110000
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHH
Q 003855 733 NLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAK 775 (791)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~ 775 (791)
.+....++.++.+++.+||+.||++||++.|+++.
T Consensus 251 --------~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 251 --------SPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp --------TTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred --------cccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 01112345678899999999999999999998753
No 90
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=8.2e-41 Score=356.51 Aligned_cols=264 Identities=18% Similarity=0.177 Sum_probs=212.3
Q ss_pred hhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhhhHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCeeeEEEe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQLERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 577 (791)
.++|++.+.||+|+||.||+|+. .+++.||||++..... .+.+..|+.+++++ +||||+++++++.+.+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e 85 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE 85 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence 36799999999999999999996 4789999999875432 24578899999999 99999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCc-----EEEeeecccccc
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMA-----AHVSDFGISKLL 652 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~-----~kl~Dfgla~~~ 652 (791)
|+ +|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+|+.+
T Consensus 86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH----~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~ 160 (330)
T 2izr_A 86 LL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVH----SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEY 160 (330)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEES
T ss_pred eC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH----hCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceee
Confidence 99 99999999976667999999999999999999999 678999999999999998887 999999999876
Q ss_pred CCCCCcc-----eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChh
Q 003855 653 GEGEDSV-----TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLT 727 (791)
Q Consensus 653 ~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 727 (791)
....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||....... ....+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~--~~~~~~~------- 231 (330)
T 2izr_A 161 IDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADT--LKERYQK------- 231 (330)
T ss_dssp BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSS--HHHHHHH-------
T ss_pred ecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCcccccccc--HHHHHHH-------
Confidence 5433211 1234579999999999999999999999999999999999999998643221 1111110
Q ss_pred hhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHh
Q 003855 728 EVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKF 783 (791)
Q Consensus 728 ~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~ 783 (791)
+........ .......++ ++.+++..||+.||.+||++.++.+.|+++..+.
T Consensus 232 -i~~~~~~~~--~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~ 283 (330)
T 2izr_A 232 -IGDTKRATP--IEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRK 283 (330)
T ss_dssp -HHHHHHHSC--HHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred -HHhhhccCC--HHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHc
Confidence 000000000 000011244 7899999999999999999999999999987664
No 91
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=1.2e-40 Score=348.02 Aligned_cols=253 Identities=28% Similarity=0.454 Sum_probs=206.0
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhh-------HHHHHHHHHHHHHHhccCCccceeeeeeccCCe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLE-------RAFRSFDSECEVLRNVRHRNLIKILSSCSNPDF 571 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 571 (791)
.++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|+.++++++||||+++++++.+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 368999999999999999999974 789999999854321 11267889999999999999999999997665
Q ss_pred eeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCC--eEecCCCCCCeEeCCCCc-----EEEe
Q 003855 572 KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAP--IIHCDLKPTNILLDENMA-----AHVS 644 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~--i~H~dlk~~Nill~~~~~-----~kl~ 644 (791)
++||||+++|+|.+++......+++..+..++.|++.||+||| +.+ |+||||||+||+++.++. +||+
T Consensus 97 -~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH----~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~ 171 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ----NQNPPIVHRDLRSPNIFLQSLDENAPVCAKVA 171 (287)
T ss_dssp -EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH----TSSSCCBCSCCSGGGEEESCCCTTCSCCEEEC
T ss_pred -eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHH----hCCCCeecCCCCcceEEEeccCCCCceeEEeC
Confidence 6999999999999999877777999999999999999999999 667 999999999999988776 9999
Q ss_pred eeccccccCCCCCcceeecccccccccCCCcc--CCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhc
Q 003855 645 DFGISKLLGEGEDSVTQTMTMATIGYMAPEYG--SEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESL 722 (791)
Q Consensus 645 Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~--~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 722 (791)
|||+++.... ......||+.|+|||.+ ....++.++||||+||++|||++|+.||.............+....
T Consensus 172 Dfg~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 246 (287)
T 4f0f_A 172 DFGLSQQSVH-----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEG 246 (287)
T ss_dssp CCTTCBCCSS-----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSC
T ss_pred CCCccccccc-----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccC
Confidence 9999975432 23345689999999988 4566889999999999999999999999764433322222222111
Q ss_pred CCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHH
Q 003855 723 PHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKI 779 (791)
Q Consensus 723 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~ 779 (791)
... ..+..++..+.+++.+||+.||++|||+.|+++.|+++
T Consensus 247 ~~~----------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 247 LRP----------------TIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp CCC----------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred CCC----------------CCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 000 01123456788999999999999999999999999764
No 92
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=2.2e-40 Score=353.84 Aligned_cols=263 Identities=24% Similarity=0.417 Sum_probs=214.8
Q ss_pred hhccccccccCCCcceEEEEEEec--------CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhc-cCCccceeeeeeccC
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS--------DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNV-RHRNLIKILSSCSNP 569 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~ 569 (791)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.+++++ +||||+++++++.+.
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 478999999999999999999863 56789999997553 34567789999999999 899999999999999
Q ss_pred CeeeEEEecCCCCCHHHHHhhCC---------------CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeE
Q 003855 570 DFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNIL 634 (791)
Q Consensus 570 ~~~~lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nil 634 (791)
+..++||||+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dlkp~NIl 189 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA----SQKCIHRDLAARNVL 189 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEE
T ss_pred CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH----hCCeeCCCCccceEE
Confidence 99999999999999999998643 23889999999999999999999 678999999999999
Q ss_pred eCCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcch
Q 003855 635 LDENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMS 713 (791)
Q Consensus 635 l~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~ 713 (791)
++.++.+||+|||+++...............+++.|+|||++.+..++.++||||||+++|||++ |+.||..... ..
T Consensus 190 l~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~ 267 (334)
T 2pvf_A 190 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV--EE 267 (334)
T ss_dssp ECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HH
T ss_pred EcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCH--HH
Confidence 99999999999999987765443333334457889999999988889999999999999999999 9999875321 11
Q ss_pred HHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcc
Q 003855 714 LRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLD 785 (791)
Q Consensus 714 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~ 785 (791)
....+...... ..+..++..+.+++.+||+.||++||++.|+++.|+++......
T Consensus 268 ~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~~~ 322 (334)
T 2pvf_A 268 LFKLLKEGHRM-----------------DKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTTN 322 (334)
T ss_dssp HHHHHHHTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCCCC-----------------CCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcccc
Confidence 11211111100 01123456788999999999999999999999999999776543
No 93
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=352.32 Aligned_cols=252 Identities=22% Similarity=0.289 Sum_probs=206.2
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhh------HHHHHHHHHHHHHHhccCCccceeeeeeccCCe
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLE------RAFRSFDSECEVLRNVRHRNLIKILSSCSNPDF 571 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 571 (791)
..+.|++.+.||+|+||.||+|+.. +|+.||+|++..... ...+.+.+|+.++++++||||+++++++.+...
T Consensus 9 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 88 (326)
T 2y0a_A 9 VDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTD 88 (326)
T ss_dssp HHHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred cccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE
Confidence 3467999999999999999999975 689999999875432 135678899999999999999999999999999
Q ss_pred eeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCC----cEEEeeec
Q 003855 572 KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENM----AAHVSDFG 647 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~----~~kl~Dfg 647 (791)
.++||||+++|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++ .+||+|||
T Consensus 89 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH----~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg 163 (326)
T 2y0a_A 89 VILILELVAGGELFDFLAEKE-SLTEEEATEFLKQILNGVYYLH----SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFG 163 (326)
T ss_dssp EEEEEECCCSCBHHHHHTTSS-CCBHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEESCSSSSSCCEEECCCT
T ss_pred EEEEEEcCCCCCHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHH----HCCeEcCCCCHHHEEEecCCCCCCCEEEEECC
Confidence 999999999999999997654 4899999999999999999999 67899999999999999887 89999999
Q ss_pred cccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChh
Q 003855 648 ISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLT 727 (791)
Q Consensus 648 la~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 727 (791)
+++....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...... .....+......
T Consensus 164 ~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~~~~~~~~--- 235 (326)
T 2y0a_A 164 LAHKIDFGNE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ--ETLANVSAVNYE--- 235 (326)
T ss_dssp TCEECCTTSC---CCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH--HHHHHHHHTCCC---
T ss_pred CCeECCCCCc---cccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH--HHHHHHHhcCCC---
Confidence 9987754322 23356899999999999899999999999999999999999999653211 111111110000
Q ss_pred hhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 728 EVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 728 ~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.. ......++..+.+++.+||+.||++|||+.|+++
T Consensus 236 ------~~-----~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 236 ------FE-----DEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp ------CC-----HHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ------cC-----ccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 00 0111234567889999999999999999999986
No 94
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-40 Score=348.98 Aligned_cols=259 Identities=27% Similarity=0.405 Sum_probs=203.3
Q ss_pred hccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEecCC
Q 003855 501 DEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEFMP 580 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~ 580 (791)
++|++.+.||+|+||.||+|++. ++.||||++... ...+.+.+|+.++++++||||+++++++.+ ..++||||++
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~~ 82 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYAE 82 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECCT
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcCC
Confidence 67899999999999999999984 788999998644 334678899999999999999999999874 4789999999
Q ss_pred CCCHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCc-EEEeeeccccccCCCCC
Q 003855 581 NGSLEKWLYSHNY--FLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMA-AHVSDFGISKLLGEGED 657 (791)
Q Consensus 581 ~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~-~kl~Dfgla~~~~~~~~ 657 (791)
+|+|.+++..... .+++..+..++.|+++||+|||+.+ ..+|+||||||+||+++.++. +||+|||+++.....
T Consensus 83 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~-~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~-- 159 (307)
T 2eva_A 83 GGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQ-PKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH-- 159 (307)
T ss_dssp TCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCS-SSCCCCCCCSGGGEEEETTTTEEEECCCCC---------
T ss_pred CCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCC-CCCeecCCCChhHEEEeCCCCEEEEcccccccccccc--
Confidence 9999999986543 4788999999999999999999422 268999999999999998886 799999999765332
Q ss_pred cceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhh
Q 003855 658 SVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVRE 737 (791)
Q Consensus 658 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 737 (791)
.....||+.|+|||++.+..++.++||||||+++|||++|+.||+............+......
T Consensus 160 ---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~------------- 223 (307)
T 2eva_A 160 ---MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRP------------- 223 (307)
T ss_dssp --------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCCC-------------
T ss_pred ---cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCCC-------------
Confidence 2234589999999999999999999999999999999999999975432211111111110000
Q ss_pred HHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcccc
Q 003855 738 EQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLDDA 787 (791)
Q Consensus 738 ~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~~~ 787 (791)
+....++..+.+++.+||+.||++|||+.|+++.|+.+.+......
T Consensus 224 ----~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~~ 269 (307)
T 2eva_A 224 ----PLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGAD 269 (307)
T ss_dssp ----CCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCCTT
T ss_pred ----CcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccCCC
Confidence 0111345667899999999999999999999999999987765443
No 95
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.6e-40 Score=385.90 Aligned_cols=392 Identities=20% Similarity=0.226 Sum_probs=317.1
Q ss_pred CccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCC
Q 003855 6 PTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNA 85 (791)
Q Consensus 6 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 85 (791)
|.+|+++++|++|+|++|+|+++.|++|.++++|++|+|++|+|+ .+|...+..+++|++|+|++|+|+++.+..|+++
T Consensus 69 ~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L 147 (635)
T 4g8a_A 69 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 147 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcC
Confidence 457999999999999999999999999999999999999999998 8888777779999999999999998888899999
Q ss_pred CCCCEEeccCcccccc-ccccccccccccccccccccccccCCCcccc------------------c-cccccCCCCCCc
Q 003855 86 TKLVALDLGFNSFAGH-ILNTFGNLRHLSLLSQVMNNLTTESSSADQW------------------S-FLSSLTNCRNLT 145 (791)
Q Consensus 86 ~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------~-~~~~l~~l~~L~ 145 (791)
++|++|+|++|++++. .+..+.++++|+.|++++|+|+.+....... . ..........+.
T Consensus 148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~ 227 (635)
T 4g8a_A 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 227 (635)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred cccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhh
Confidence 9999999999999875 4678899999999999999998765432000 0 000000011111
Q ss_pred EEEccCC-------------------------------------------------------------------------
Q 003855 146 ILSFGSN------------------------------------------------------------------------- 152 (791)
Q Consensus 146 ~L~L~~N------------------------------------------------------------------------- 152 (791)
.|++.+|
T Consensus 228 ~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 307 (635)
T 4g8a_A 228 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTN 307 (635)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTT
T ss_pred hhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcc
Confidence 2222222
Q ss_pred ---------CCcccCChhhhhhhhhhhhhhcccccccccCC-------------------ccccCCCCCCEEEccCCccc
Q 003855 153 ---------PLGGILPPVIGNFSASLQKFYAYECKLKGNIP-------------------QEIGNLSGLTLLSLHSNDLN 204 (791)
Q Consensus 153 ---------~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------------------~~~~~l~~L~~L~L~~N~l~ 204 (791)
.+.... .+ .....|+.|.+.+|.+....+ .....+++|+.|++++|.+.
T Consensus 308 l~~l~~~~~~~~~~~--~~-~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 384 (635)
T 4g8a_A 308 VSSFSLVSVTIERVK--DF-SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 384 (635)
T ss_dssp CSEEEEESCEEEECG--GG-GSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCB
T ss_pred ccccccccccccccc--cc-ccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccc
Confidence 111000 00 001134445555554443222 22345789999999999986
Q ss_pred c--ccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCC-CccccCCCCCcEEEcCCCcCCCCCCc
Q 003855 205 G--TISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHI-PPCLVSLTSLRELHLGSNKLTSSIPS 281 (791)
Q Consensus 205 ~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~ 281 (791)
. ..+..+..+.+|++|+++.|.+. ..+..+..+++|+.+++++|...... +..+..+++++.+++++|.+.+..+.
T Consensus 385 ~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~ 463 (635)
T 4g8a_A 385 FKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 463 (635)
T ss_dssp EEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred cccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccccccccccccccccccc
Confidence 3 45566778899999999999988 45667889999999999999876554 45688999999999999999999999
Q ss_pred cccCCCCCCeEEccCCcC-cccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCC
Q 003855 282 SLWSLEYILDINLSSNSL-NDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLIS 360 (791)
Q Consensus 282 ~~~~l~~L~~L~l~~N~i-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 360 (791)
.+..++.|+.|++++|.+ ....|..|..+++|+.|+|++|++++..|..|.++++|++|+|++|+|++..|..|..+++
T Consensus 464 ~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 543 (635)
T 4g8a_A 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543 (635)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT
T ss_pred ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC
Confidence 999999999999999985 4467889999999999999999999888999999999999999999999888899999999
Q ss_pred CcEEEccCCccCCCCchhhhhc-ccCceEEccCCCCcccCCCC
Q 003855 361 LESLDLSGNNLSGKIPKSLETL-SQLKQFNVSHNRLEGEIPVK 402 (791)
Q Consensus 361 L~~L~l~~N~l~~~~~~~~~~l-~~L~~l~l~~N~l~~~~~~~ 402 (791)
|+.|||++|+|++..|..|..+ ++|+.|+|++|+|.|.+...
T Consensus 544 L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp CCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred CCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 9999999999999999999998 68999999999999988643
No 96
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=8.9e-42 Score=379.56 Aligned_cols=259 Identities=23% Similarity=0.409 Sum_probs=212.3
Q ss_pred HhhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEec
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEF 578 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 578 (791)
..++|++.+.||+|+||.||+|.++++..||||++.... ...+.+.+|+.++++++||||+++++++. .+..++||||
T Consensus 186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~ 263 (454)
T 1qcf_A 186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEF 263 (454)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECC
T ss_pred chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEee
Confidence 346899999999999999999999888999999997643 34578999999999999999999999986 5678999999
Q ss_pred CCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCC
Q 003855 579 MPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGED 657 (791)
Q Consensus 579 ~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~ 657 (791)
+++|+|.++++... ..+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+......
T Consensus 264 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH----~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~- 338 (454)
T 1qcf_A 264 MAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE----QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE- 338 (454)
T ss_dssp CTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHH----HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHH-
T ss_pred cCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH----hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCc-
Confidence 99999999998542 34789999999999999999999 6789999999999999999999999999998764321
Q ss_pred cceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhh
Q 003855 658 SVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVR 736 (791)
Q Consensus 658 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 736 (791)
........++..|+|||++..+.++.++|||||||++|||+| |+.||.+.... ...+.+....
T Consensus 339 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~--~~~~~i~~~~-------------- 402 (454)
T 1qcf_A 339 YTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP--EVIRALERGY-------------- 402 (454)
T ss_dssp HHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHHHHHHHTC--------------
T ss_pred eeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCC--------------
Confidence 111223346788999999988899999999999999999999 99999763221 1111111110
Q ss_pred hHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHh
Q 003855 737 EEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKF 783 (791)
Q Consensus 737 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~ 783 (791)
..+.+..++..+.++|.+||+.||++|||+.++++.|+.+....
T Consensus 403 ---~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~ 446 (454)
T 1qcf_A 403 ---RMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTAT 446 (454)
T ss_dssp ---CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSS
T ss_pred ---CCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhcc
Confidence 11112346678899999999999999999999999999875443
No 97
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=8.7e-41 Score=357.05 Aligned_cols=267 Identities=21% Similarity=0.341 Sum_probs=216.2
Q ss_pred HHHhhccccccccCCCcceEEEEEEec-C-----CcEEEEEEeehhh-hHHHHHHHHHHHHHHhc-cCCccceeeeeecc
Q 003855 497 QRATDEFNECNLLGTGSFGSVYKGTIS-D-----GTDVAIKIFNLQL-ERAFRSFDSECEVLRNV-RHRNLIKILSSCSN 568 (791)
Q Consensus 497 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~-----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~ 568 (791)
+...++|+..+.||+|+||.||+|... + +..||+|++.... ....+.+.+|+.+++++ +||||+++++++.+
T Consensus 42 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~ 121 (333)
T 2i1m_A 42 EFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTH 121 (333)
T ss_dssp BCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred cCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEec
Confidence 334578999999999999999999864 2 2479999987653 34456789999999999 89999999999999
Q ss_pred CCeeeEEEecCCCCCHHHHHhhC-------------CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEe
Q 003855 569 PDFKALVLEFMPNGSLEKWLYSH-------------NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILL 635 (791)
Q Consensus 569 ~~~~~lv~e~~~~g~L~~~l~~~-------------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill 635 (791)
.+..++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~Dlkp~NIl~ 197 (333)
T 2i1m_A 122 GGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA----SKNCIHRDVAARNVLL 197 (333)
T ss_dssp SSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGCEE
T ss_pred CCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh----cCCcccCCcccceEEE
Confidence 99999999999999999999743 234789999999999999999999 6789999999999999
Q ss_pred CCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchH
Q 003855 636 DENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSL 714 (791)
Q Consensus 636 ~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~ 714 (791)
+.++.+||+|||+++...............+|+.|+|||.+.+..++.++|||||||++|||+| |..||...... ...
T Consensus 198 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~-~~~ 276 (333)
T 2i1m_A 198 TNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVN-SKF 276 (333)
T ss_dssp EGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSS-HHH
T ss_pred CCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchh-HHH
Confidence 9999999999999987654443333344557889999999888889999999999999999999 89998764322 122
Q ss_pred HHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcc
Q 003855 715 RRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLD 785 (791)
Q Consensus 715 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~ 785 (791)
...+....... .+..++..+.+++.+||+.||++|||+.|+++.|+++......
T Consensus 277 ~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~ 330 (333)
T 2i1m_A 277 YKLVKDGYQMA-----------------QPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQEDRR 330 (333)
T ss_dssp HHHHHHTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCC-----------------CCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHhhhc
Confidence 22222211110 1112346678999999999999999999999999998766543
No 98
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=3.9e-41 Score=350.46 Aligned_cols=258 Identities=22% Similarity=0.354 Sum_probs=200.8
Q ss_pred hhccccccccCCCcceEEEEEEec----CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS----DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 574 (791)
.++|++.+.||+|+||.||+|+.. .+..||+|++.... ....+.+.+|+.++++++||||+++++++. .+..++
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~l 92 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI 92 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEE
Confidence 468999999999999999999864 24579999986543 344567899999999999999999999985 456889
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCC
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~ 654 (791)
||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 93 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 168 (281)
T 1mp8_A 93 IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE----SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 168 (281)
T ss_dssp EEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEEEETTEEEECC---------
T ss_pred EEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----hCCeecccccHHHEEECCCCCEEECccccccccCc
Confidence 99999999999999977767999999999999999999999 67899999999999999999999999999987654
Q ss_pred CCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchh
Q 003855 655 GEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDAN 733 (791)
Q Consensus 655 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 733 (791)
.... ......+++.|+|||.+.+..++.++||||||+++|||++ |..||...... .....+......
T Consensus 169 ~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~--~~~~~i~~~~~~--------- 236 (281)
T 1mp8_A 169 STYY-KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIGRIENGERL--------- 236 (281)
T ss_dssp -----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHHTTCCC---------
T ss_pred cccc-ccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHH--HHHHHHHcCCCC---------
Confidence 3221 2223356789999999988889999999999999999997 99999764322 122221111000
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 734 LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
+.+..++..+.+++.+||+.||++||++.|+++.|+++..+
T Consensus 237 --------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 277 (281)
T 1mp8_A 237 --------PMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 277 (281)
T ss_dssp --------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --------CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 01123556788999999999999999999999999998664
No 99
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.2e-41 Score=358.10 Aligned_cols=274 Identities=25% Similarity=0.418 Sum_probs=216.1
Q ss_pred hhccccccccCCCcceEEEEEEe-----cCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCC--ee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-----SDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPD--FK 572 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~ 572 (791)
.++|++.+.||+|+||.||+|++ .+++.||||++........+.+.+|+.++++++||||+++++++...+ ..
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 119 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 119 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence 36789999999999999999984 368999999998766666778999999999999999999999986543 78
Q ss_pred eEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccccc
Q 003855 573 ALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLL 652 (791)
Q Consensus 573 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~ 652 (791)
++||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 120 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~ 195 (326)
T 2w1i_A 120 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG----TKRYIHRDLATRNILVENENRVKIGDFGLTKVL 195 (326)
T ss_dssp EEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred EEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH----hCCEeccCCCcceEEEcCCCcEEEecCcchhhc
Confidence 9999999999999999987667999999999999999999999 678999999999999999999999999999887
Q ss_pred CCCCCcce-eecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcc
Q 003855 653 GEGEDSVT-QTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVD 731 (791)
Q Consensus 653 ~~~~~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d 731 (791)
........ .....++..|+|||.+.+..++.++||||||+++|||+||..|+..... .+..............
T Consensus 196 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~------~~~~~~~~~~~~~~~~ 269 (326)
T 2w1i_A 196 PQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA------EFMRMIGNDKQGQMIV 269 (326)
T ss_dssp CSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHH------HHHHHHCTTCCTHHHH
T ss_pred cccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHH------HHHHhhccccchhhhH
Confidence 55433221 2233567789999999888899999999999999999999998764211 1111100000000000
Q ss_pred hhh---hhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHh
Q 003855 732 ANL---VREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKF 783 (791)
Q Consensus 732 ~~~---~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~ 783 (791)
..+ .......+.+..++.++.+++.+||+.||++||++.|+++.|++++++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l 324 (326)
T 2w1i_A 270 FHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQM 324 (326)
T ss_dssp HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 000 0000011122346678999999999999999999999999999998875
No 100
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=3.4e-40 Score=354.26 Aligned_cols=252 Identities=23% Similarity=0.315 Sum_probs=205.1
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhh-----HHHHHHHHHHHHHHhccCCccceeeeeeccCCeee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLE-----RAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKA 573 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 573 (791)
.++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|+.++++++||||+++++++.+.+..+
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 467999999999999999999875 789999999875431 13567899999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCc---EEEeeec
Q 003855 574 LVLEFMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMA---AHVSDFG 647 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~---~kl~Dfg 647 (791)
+||||+++|+|.+++... ...+++..+..++.||+.||+||| +.+|+||||||+||+++.++. +||+|||
T Consensus 103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH----~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg 178 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH----DNNIIHRDVKPHCVLLASKENSAPVKLGGFG 178 (351)
T ss_dssp EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECSSSTTCCEEECCCT
T ss_pred EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH----HCCceeccCChHHeEEecCCCCCcEEEecCc
Confidence 999999999999888642 345899999999999999999999 678999999999999986654 9999999
Q ss_pred cccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChh
Q 003855 648 ISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLT 727 (791)
Q Consensus 648 la~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 727 (791)
+++....... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||.... +.............
T Consensus 179 ~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~--~~~~~~i~~~~~~~--- 251 (351)
T 3c0i_A 179 VAIQLGESGL--VAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK--ERLFEGIIKGKYKM--- 251 (351)
T ss_dssp TCEECCTTSC--BCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH--HHHHHHHHHTCCCC---
T ss_pred ceeEecCCCe--eecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH--HHHHHHHHcCCCCC---
Confidence 9987754322 2334579999999999999999999999999999999999999997631 11111111111000
Q ss_pred hhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 728 EVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 728 ~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
. ......++..+.+++.+||+.||++|||+.|+++
T Consensus 252 ---~---------~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 252 ---N---------PRQWSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp ---C---------HHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ---C---------ccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0 0111234567889999999999999999999985
No 101
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.2e-40 Score=344.08 Aligned_cols=258 Identities=26% Similarity=0.374 Sum_probs=213.4
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEecC
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEFM 579 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 579 (791)
.++|+..+.||+|+||.||+|+..+++.||+|++..... ..+.+.+|++++++++||||+++++++.+.+..++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFM 85 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCC
T ss_pred hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCC
Confidence 367999999999999999999998889999999976543 2367889999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCcc
Q 003855 580 PNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDSV 659 (791)
Q Consensus 580 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~~ 659 (791)
++|+|.+++......+++..+..++.|++.||.||| +.+++||||||+||+++.++.+||+|||+++...... ..
T Consensus 86 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~-~~ 160 (267)
T 3t9t_A 86 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE----EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YT 160 (267)
T ss_dssp TTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH-HH
T ss_pred CCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHH----hCCcccCCCchheEEECCCCCEEEccccccccccccc-cc
Confidence 999999999987667899999999999999999999 6789999999999999999999999999998764321 11
Q ss_pred eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhhH
Q 003855 660 TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREE 738 (791)
Q Consensus 660 ~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 738 (791)
......++..|+|||...+..++.++||||+|+++|||++ |+.||...... .....+.......
T Consensus 161 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~i~~~~~~~------------- 225 (267)
T 3t9t_A 161 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS--EVVEDISTGFRLY------------- 225 (267)
T ss_dssp STTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHTTCCCC-------------
T ss_pred ccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHH--HHHHHHhcCCcCC-------------
Confidence 2223456788999999988889999999999999999999 89998753211 1111111110000
Q ss_pred HhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 739 QAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 739 ~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
.+..++..+.+++.+||+.||++||++.|+++.|+++.+.
T Consensus 226 ----~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 226 ----KPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp ----CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ----CCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 0112345678999999999999999999999999999764
No 102
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=7.3e-40 Score=351.35 Aligned_cols=280 Identities=22% Similarity=0.359 Sum_probs=221.4
Q ss_pred CCChhHHHHHhhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHh--ccCCccceeeeeec
Q 003855 490 RTPYLDIQRATDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRN--VRHRNLIKILSSCS 567 (791)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~ 567 (791)
..+....+...++|++.+.||+|+||.||+|+. +++.||||++.... .+.+..|++++.. ++||||+++++++.
T Consensus 31 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~l~h~ni~~~~~~~~ 106 (342)
T 1b6c_B 31 GLPLLVQRTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADN 106 (342)
T ss_dssp SSCHHHHHHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHHHSCCCCTTBCCEEEEEE
T ss_pred CCceeecccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCchh---HHHHHHHHHHHHHhhcCCCcEEEEEeeec
Confidence 456666677789999999999999999999998 58999999987543 3466778888887 78999999999998
Q ss_pred cCC----eeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccC----CCCCeEecCCCCCCeEeCCCC
Q 003855 568 NPD----FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGH----SSAPIIHCDLKPTNILLDENM 639 (791)
Q Consensus 568 ~~~----~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~----~~~~i~H~dlk~~Nill~~~~ 639 (791)
... ..++||||+++|+|.+++.... +++..++.++.|++.||+|||... .+.+|+||||||+||+++.++
T Consensus 107 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~ 184 (342)
T 1b6c_B 107 KDNGTWTQLWLVSDYHEHGSLFDYLNRYT--VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNG 184 (342)
T ss_dssp CCCSSCCCEEEEECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTS
T ss_pred ccCCccceeEEEEeecCCCcHHHHHhccC--ccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCC
Confidence 765 7899999999999999998754 899999999999999999999311 135799999999999999999
Q ss_pred cEEEeeeccccccCCCCCcc--eeecccccccccCCCccCCC------CCCccccHHhHHHHHHHHHhC----------C
Q 003855 640 AAHVSDFGISKLLGEGEDSV--TQTMTMATIGYMAPEYGSEG------IVSAKCDVYSYGVLLMETFTR----------K 701 (791)
Q Consensus 640 ~~kl~Dfgla~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~------~~~~~~Dv~s~G~vl~elltg----------~ 701 (791)
.+||+|||+++......... ......||+.|+|||.+.+. .++.++|||||||++|||+|| .
T Consensus 185 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~ 264 (342)
T 1b6c_B 185 TCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQ 264 (342)
T ss_dssp CEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCC
T ss_pred CEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccc
Confidence 99999999998765443221 22344689999999988765 344789999999999999999 6
Q ss_pred CCCCccccCcchHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHH
Q 003855 702 RPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKV 781 (791)
Q Consensus 702 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~ 781 (791)
.||............+............+... ....+++..+.+++.+||+.||++|||+.||++.|+++.+
T Consensus 265 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~ 336 (342)
T 1b6c_B 265 LPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNR--------WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 336 (342)
T ss_dssp CTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGG--------GGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cCccccCcCcccHHHHHHHHHHHHhCCCCccc--------ccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHH
Confidence 78876544444444444333222211111111 1123567789999999999999999999999999999977
Q ss_pred Hh
Q 003855 782 KF 783 (791)
Q Consensus 782 ~~ 783 (791)
+.
T Consensus 337 ~~ 338 (342)
T 1b6c_B 337 QE 338 (342)
T ss_dssp TT
T ss_pred Hh
Confidence 54
No 103
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=4e-41 Score=360.16 Aligned_cols=281 Identities=25% Similarity=0.363 Sum_probs=200.9
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeee-----ccCCeeeE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSC-----SNPDFKAL 574 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~-----~~~~~~~l 574 (791)
.++|++.+.||+|+||.||+|+. +++.||||++....... .....|+..+..++||||+++++++ ......++
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~-~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~l 89 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQN-FINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLL 89 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGGHHH-HHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEE
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccchhh-HHHHHHHHHHHhccCcchhhheecccccccCCCceEEE
Confidence 46899999999999999999987 68999999997554322 1223344445568999999999754 23446789
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCC---------CeEecCCCCCCeEeCCCCcEEEee
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSA---------PIIHCDLKPTNILLDENMAAHVSD 645 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~---------~i~H~dlk~~Nill~~~~~~kl~D 645 (791)
||||+++|+|.+++.... .++..+..++.|+++||+||| +. +|+||||||+|||++.++.+||+|
T Consensus 90 v~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~~L~~LH----~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~D 163 (336)
T 3g2f_A 90 VMEYYPNGSLXKYLSLHT--SDWVSSCRLAHSVTRGLAYLH----TELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISD 163 (336)
T ss_dssp EECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHH----CCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECC
T ss_pred EEecCCCCcHHHHHhhcc--cchhHHHHHHHHHHHHHHHHH----hhhccccccccceeecccccceEEEcCCCcEEEee
Confidence 999999999999998765 588999999999999999999 55 899999999999999999999999
Q ss_pred eccccccCCCCC------cceeecccccccccCCCccCC-------CCCCccccHHhHHHHHHHHHhCCCCCCccccCcc
Q 003855 646 FGISKLLGEGED------SVTQTMTMATIGYMAPEYGSE-------GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEM 712 (791)
Q Consensus 646 fgla~~~~~~~~------~~~~~~~~g~~~y~aPE~~~~-------~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~ 712 (791)
||+|+.+..... ........||+.|+|||++.+ ..++.++|||||||++|||++|..|+........
T Consensus 164 FG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~ 243 (336)
T 3g2f_A 164 FGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPE 243 (336)
T ss_dssp CTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCC
T ss_pred ccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhH
Confidence 999987654321 122234469999999998876 4567799999999999999999776533211110
Q ss_pred hHHHHHHHhcCCChhhhcchhhhhh------HHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhccc
Q 003855 713 SLRRWVKESLPHGLTEVVDANLVRE------EQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLDD 786 (791)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~~ 786 (791)
....+..........+......... .........++..+.+++.+||+.||++|||+.|+++.|+++...|...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~ 323 (336)
T 3g2f_A 244 YQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERN 323 (336)
T ss_dssp CCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC-
T ss_pred HHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhc
Confidence 0000000000000000000000000 0001112246678999999999999999999999999999999888766
Q ss_pred cc
Q 003855 787 AS 788 (791)
Q Consensus 787 ~~ 788 (791)
.+
T Consensus 324 ~~ 325 (336)
T 3g2f_A 324 KS 325 (336)
T ss_dssp --
T ss_pred cc
Confidence 54
No 104
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=6e-40 Score=353.95 Aligned_cols=250 Identities=26% Similarity=0.324 Sum_probs=203.5
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|++.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv 93 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV 93 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 368999999999999999999975 68899999997543 33456788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+++|+|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+||+++.++.+||+|||+|+.+...
T Consensus 94 ~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH----~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 168 (384)
T 4fr4_A 94 VDLLLGGDLRYHLQQNV-HFKEETVKLFICELVMALDYLQ----NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE 168 (384)
T ss_dssp ECCCTTEEHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCceeccCcHHHeEECCCCCEEEeccceeeeccCC
Confidence 99999999999998654 4899999999999999999999 678999999999999999999999999999876543
Q ss_pred CCcceeecccccccccCCCccCC---CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcch
Q 003855 656 EDSVTQTMTMATIGYMAPEYGSE---GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDA 732 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~~---~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 732 (791)
. .....+||+.|+|||++.. ..++.++|||||||++|||++|+.||....... ....+......
T Consensus 169 ~---~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~--~~~~~~~~~~~-------- 235 (384)
T 4fr4_A 169 T---QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTS--SKEIVHTFETT-------- 235 (384)
T ss_dssp C---CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSC--HHHHHHHHHHC--------
T ss_pred C---ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCcc--HHHHHHHHhhc--------
Confidence 2 2334579999999998863 458999999999999999999999997532221 11111110000
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCC-HHHHHH
Q 003855 733 NLVREEQAFSAKMDCILSIMDLALDCCIESPDMRIN-VTDAAA 774 (791)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt-~~ev~~ 774 (791)
....+..++..+.+++.+||+.||++||+ +.++.+
T Consensus 236 -------~~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 236 -------VVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp -------CCCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred -------ccCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 00011234567889999999999999998 666553
No 105
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=6.2e-41 Score=356.54 Aligned_cols=258 Identities=22% Similarity=0.403 Sum_probs=206.6
Q ss_pred hccccccccCCCcceEEEEEEec-CCcE----EEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeE
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS-DGTD----VAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 574 (791)
++|+..+.||+|+||.||+|++. +++. ||+|.+.... ....+.+.+|+.++++++||||+++++++. ....++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~ 91 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL 91 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence 57899999999999999999964 4444 7888775432 233356778999999999999999999986 456889
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCC
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~ 654 (791)
||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+.+..
T Consensus 92 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 167 (325)
T 3kex_A 92 VTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLE----EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPP 167 (325)
T ss_dssp EEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHH----HTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCC
T ss_pred EEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHH----hCCCCCCccchheEEECCCCeEEECCCCcccccCc
Confidence 99999999999999877666899999999999999999999 67899999999999999999999999999998766
Q ss_pred CCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchh
Q 003855 655 GEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDAN 733 (791)
Q Consensus 655 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 733 (791)
...........++..|+|||.+.++.++.++|||||||++|||+| |+.||...... .....+......
T Consensus 168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--~~~~~~~~~~~~--------- 236 (325)
T 3kex_A 168 DDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLA--EVPDLLEKGERL--------- 236 (325)
T ss_dssp CTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTT--HHHHHHHTTCBC---------
T ss_pred ccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHH--HHHHHHHcCCCC---------
Confidence 554444455568889999999988899999999999999999999 99999764322 222222211100
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 734 LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
..+..++..+.+++.+||+.||++||++.|+++.|+++...
T Consensus 237 --------~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~ 277 (325)
T 3kex_A 237 --------AQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARD 277 (325)
T ss_dssp --------CCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred --------CCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 01112344567899999999999999999999999988543
No 106
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=4.6e-41 Score=353.95 Aligned_cols=269 Identities=22% Similarity=0.378 Sum_probs=209.8
Q ss_pred hccccccccCCCcceEEEEEEe-----cCCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccC--Cee
Q 003855 501 DEFNECNLLGTGSFGSVYKGTI-----SDGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNP--DFK 572 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~ 572 (791)
+.|+..+.||+|+||.||+|++ .+++.||||++.... ....+.+.+|+.++++++||||+++++++.+. ...
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 100 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence 5689999999999999999984 368999999987543 33457789999999999999999999999776 668
Q ss_pred eEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccccc
Q 003855 573 ALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLL 652 (791)
Q Consensus 573 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~ 652 (791)
++||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 101 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~ 176 (302)
T 4e5w_A 101 KLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLG----SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAI 176 (302)
T ss_dssp EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred EEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhh----cCCcccCCCchheEEEcCCCCEEECcccccccc
Confidence 9999999999999999766666999999999999999999999 678999999999999999999999999999887
Q ss_pred CCCCCc-ceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC---hhh
Q 003855 653 GEGEDS-VTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG---LTE 728 (791)
Q Consensus 653 ~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~---~~~ 728 (791)
...... .......||..|+|||.+.+..++.++||||+|+++|||+||+.|+.... ..+.....+.. ...
T Consensus 177 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~ 250 (302)
T 4e5w_A 177 ETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPM------ALFLKMIGPTHGQMTVT 250 (302)
T ss_dssp CTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH------HHHHHHHCSCCGGGHHH
T ss_pred cCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchh------hHHhhccCCcccccCHH
Confidence 654332 22333467888999999988899999999999999999999999864321 11111111100 000
Q ss_pred hcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHH
Q 003855 729 VVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIK 780 (791)
Q Consensus 729 ~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~ 780 (791)
.+...+. .....+.+..++..+.+++.+||+.||++|||+.|+++.|+++.
T Consensus 251 ~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 251 RLVNTLK-EGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HHHHHHH-TTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHh-ccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 0000000 00011122345678899999999999999999999999999874
No 107
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=3.7e-41 Score=360.64 Aligned_cols=249 Identities=24% Similarity=0.292 Sum_probs=199.9
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCeee
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDFKA 573 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~ 573 (791)
..++|++.+.||+|+||.||+|+.+ +++.||||++.... ....+.+..|..+++.+ +||||+++++++.+.+..+
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 100 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF 100 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence 3578999999999999999999975 68999999997653 33456778899999988 7999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccC
Q 003855 574 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLG 653 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~ 653 (791)
+||||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+...
T Consensus 101 lv~E~~~gg~L~~~l~~~~~-~~~~~~~~~~~qi~~aL~~LH----~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~ 175 (353)
T 3txo_A 101 FVMEFVNGGDLMFHIQKSRR-FDEARARFYAAEIISALMFLH----DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI 175 (353)
T ss_dssp EEEECCCSCBHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred EEEeCCCCCcHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH----HCCCcccCCCHHHEEECCCCCEEEccccceeecc
Confidence 99999999999999986543 899999999999999999999 6789999999999999999999999999998643
Q ss_pred CCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchh
Q 003855 654 EGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDAN 733 (791)
Q Consensus 654 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 733 (791)
... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ....+.+.....
T Consensus 176 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~--~~~~~~i~~~~~---------- 241 (353)
T 3txo_A 176 CNG--VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENE--DDLFEAILNDEV---------- 241 (353)
T ss_dssp C-----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCCC----------
T ss_pred cCC--ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCH--HHHHHHHHcCCC----------
Confidence 222 223345799999999999888899999999999999999999999975322 111111111000
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCH------HHHHH
Q 003855 734 LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINV------TDAAA 774 (791)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~------~ev~~ 774 (791)
..+..++..+.+++.+|++.||++||++ .|+++
T Consensus 242 --------~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~ 280 (353)
T 3txo_A 242 --------VYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR 280 (353)
T ss_dssp --------CCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred --------CCCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence 0011234567899999999999999998 66654
No 108
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=4.9e-41 Score=357.84 Aligned_cols=275 Identities=26% Similarity=0.355 Sum_probs=214.0
Q ss_pred hccccccccCCCcceEEEEEEe-----cCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeec--cCCeee
Q 003855 501 DEFNECNLLGTGSFGSVYKGTI-----SDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCS--NPDFKA 573 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~ 573 (791)
++|+..+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++. +....+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 102 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR 102 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence 6899999999999999999984 368899999998776666778999999999999999999999885 456789
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccC
Q 003855 574 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLG 653 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~ 653 (791)
+||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH----~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~ 178 (327)
T 3lxl_A 103 LVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLG----SRRCVHRDLAARNILVESEAHVKIADFGLAKLLP 178 (327)
T ss_dssp EEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEEETTEEEECCGGGCEECC
T ss_pred EEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH----hCCccCCCCChhhEEECCCCCEEEcccccceecc
Confidence 999999999999999875556899999999999999999999 6789999999999999999999999999998875
Q ss_pred CCCCcc-eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC----hhh
Q 003855 654 EGEDSV-TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG----LTE 728 (791)
Q Consensus 654 ~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~----~~~ 728 (791)
...... ......+|..|+|||.+.+..++.++||||||+++|||++|+.||...... +........ ...
T Consensus 179 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~------~~~~~~~~~~~~~~~~ 252 (327)
T 3lxl_A 179 LDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAE------FLRMMGCERDVPALSR 252 (327)
T ss_dssp TTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHH------HHHHCC----CCHHHH
T ss_pred cCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccch------hhhhcccccccccHHH
Confidence 443322 223345788899999998888999999999999999999999998652211 111100000 001
Q ss_pred hcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcccc
Q 003855 729 VVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLDDA 787 (791)
Q Consensus 729 ~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~~~ 787 (791)
..+. .......+.+..++..+.+++.+||+.||++|||+.|+++.|+.+.....+..
T Consensus 253 ~~~~--~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~~ 309 (327)
T 3lxl_A 253 LLEL--LEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSRGCE 309 (327)
T ss_dssp HHHH--HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC--------
T ss_pred HHHH--hhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhcCcc
Confidence 0000 00001111223466788999999999999999999999999999876655443
No 109
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=2e-40 Score=350.00 Aligned_cols=245 Identities=25% Similarity=0.321 Sum_probs=204.2
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|++.+.||+|+||.||+|+.. +|+.||+|++.... ....+.+.+|+.+++.++||||+++++++.+....++|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 468999999999999999999975 79999999997653 23456788899999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 85 ~e~~~gg~L~~~l~~~~~-~~~~~~~~~~~qi~~aL~~LH----~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~ 159 (318)
T 1fot_A 85 MDYIEGGELFSLLRKSQR-FPNPVAKFYAAEVCLALEYLH----SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV 159 (318)
T ss_dssp ECCCCSCBHHHHHHHTSS-CCHHHHHHHHHHHHHHHHHHH----TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC
T ss_pred EeCCCCCCHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH----HCCccccCCChheEEEcCCCCEEEeecCcceecCCc
Confidence 999999999999987543 899999999999999999999 789999999999999999999999999999875432
Q ss_pred CCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 656 EDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
....+||+.|+|||++.+..++.++||||+||++|||++|+.||...... ..+........
T Consensus 160 -----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~~~~i~~~~~------------- 220 (318)
T 1fot_A 160 -----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTM-KTYEKILNAEL------------- 220 (318)
T ss_dssp -----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHHCCC-------------
T ss_pred -----cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH-HHHHHHHhCCC-------------
Confidence 22356999999999999999999999999999999999999999753211 11111111000
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCC-----CHHHHHH
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRI-----NVTDAAA 774 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RP-----t~~ev~~ 774 (791)
..+..++.++.+++.+|++.||++|| ++.|+++
T Consensus 221 ------~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 221 ------RFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp ------CCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred ------CCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 00112345678999999999999999 8888874
No 110
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=356.70 Aligned_cols=252 Identities=23% Similarity=0.343 Sum_probs=196.9
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccC--CccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRH--RNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h--~niv~l~~~~~~~~~~~lv 575 (791)
.++|++.+.||+|+||.||+|...+++.||||++.... ....+.+.+|+.++++++| |||+++++++.+....++|
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 36799999999999999999999889999999987543 3445778999999999976 9999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
||+ .+|+|.+++.... .+++.++..++.|++.||+||| +.+|+||||||+|||++ ++.+||+|||+|+.....
T Consensus 88 ~e~-~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH----~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~ 160 (343)
T 3dbq_A 88 MEC-GNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH----QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 160 (343)
T ss_dssp ECC-CSEEHHHHHHHSC-CCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC---
T ss_pred EeC-CCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----hCCeecCCCCcceEEEE-CCcEEEeecccccccCcc
Confidence 995 5889999998764 4899999999999999999999 67899999999999997 678999999999877554
Q ss_pred CCcceeecccccccccCCCccCC-----------CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCC
Q 003855 656 EDSVTQTMTMATIGYMAPEYGSE-----------GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPH 724 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~~-----------~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 724 (791)
.........+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.........+...+......
T Consensus 161 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 3dbq_A 161 TTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEI 240 (343)
T ss_dssp ---------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCC
T ss_pred cccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCccc
Confidence 43333445679999999998754 6789999999999999999999999975332211111111111110
Q ss_pred ChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHH
Q 003855 725 GLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAK 775 (791)
Q Consensus 725 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~ 775 (791)
.. +..++..+.+++.+||+.||++|||+.|+++.
T Consensus 241 ~~-----------------~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 241 EF-----------------PDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp CC-----------------CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CC-----------------cccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 00 01123457799999999999999999999763
No 111
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=1.1e-40 Score=353.38 Aligned_cols=274 Identities=25% Similarity=0.405 Sum_probs=213.1
Q ss_pred cccccccCCCcceEEEEEEec-----CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeecc--CCeeeE
Q 003855 503 FNECNLLGTGSFGSVYKGTIS-----DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSN--PDFKAL 574 (791)
Q Consensus 503 ~~~~~~ig~G~~g~Vy~~~~~-----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~l 574 (791)
|++.+.||+|+||.||++++. +++.||||++.... ....+.+.+|++++++++||||+++++++.+ ....++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 489999999999999998753 68899999997654 3446778999999999999999999999976 467899
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCC
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~ 654 (791)
||||+++|+|.+++.... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 113 v~e~~~~~~L~~~l~~~~--~~~~~~~~i~~~l~~~l~~LH----~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 186 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPRHS--IGLAQLLLFAQQICEGMAYLH----AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE 186 (318)
T ss_dssp EECCCTTCBHHHHGGGSC--CCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTCCEEECCGGGCEECCT
T ss_pred EEecccCCcHHHHHhhCC--CCHHHHHHHHHHHHHHHHHHH----hCCccCCCCchheEEEcCCCCEEECCccccccccc
Confidence 999999999999998765 899999999999999999999 67899999999999999999999999999998765
Q ss_pred CCCcc-eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC-hhhhcch
Q 003855 655 GEDSV-TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG-LTEVVDA 732 (791)
Q Consensus 655 ~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~ 732 (791)
..... ......+|..|+|||.+.+..++.++||||||+++|||+||+.||........... ..... .......
T Consensus 187 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~ 261 (318)
T 3lxp_A 187 GHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELI-----GIAQGQMTVLRLT 261 (318)
T ss_dssp TCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHH-----CSCCHHHHHHHHH
T ss_pred cccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhh-----cccccchhHHHHH
Confidence 43322 22334578889999999888899999999999999999999999865321100000 00000 0000000
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcccc
Q 003855 733 NLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLDDA 787 (791)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~~~ 787 (791)
.........+.+..++..+.+++.+||+.||++|||+.|+++.|+++..++...+
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~~~ 316 (318)
T 3lxp_A 262 ELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQGQA 316 (318)
T ss_dssp HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC--
T ss_pred HHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhccCC
Confidence 0000001111223466789999999999999999999999999999988876543
No 112
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.8e-41 Score=363.72 Aligned_cols=263 Identities=24% Similarity=0.407 Sum_probs=202.3
Q ss_pred hccccccccCCCcceEEEEEEec--CC--cEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeecc-CCeeeE
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS--DG--TDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSN-PDFKAL 574 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~--~~--~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~l 574 (791)
..|+..+.||+|+||.||+|++. ++ ..||||.+.... ....+.+.+|+.++++++||||+++++++.+ .+..++
T Consensus 89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~l 168 (373)
T 3c1x_A 89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 168 (373)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEE
T ss_pred ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEE
Confidence 35777889999999999999864 22 468999886433 3456789999999999999999999998754 567899
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCC
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~ 654 (791)
||||+++|+|.+++......+++..+..++.||++||+||| +.+|+||||||+||+++.++.+||+|||+++.+..
T Consensus 169 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~ 244 (373)
T 3c1x_A 169 VLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLA----SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD 244 (373)
T ss_dssp EEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred EEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH----HCCEecCccchheEEECCCCCEEEeeccccccccc
Confidence 99999999999999977777899999999999999999999 67899999999999999999999999999987644
Q ss_pred CCCc--ceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcc
Q 003855 655 GEDS--VTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVD 731 (791)
Q Consensus 655 ~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d 731 (791)
.... .......+|+.|+|||.+.+..++.++|||||||++|||+| |.+||......+ ....+.....
T Consensus 245 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~--~~~~~~~~~~-------- 314 (373)
T 3c1x_A 245 KEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD--ITVYLLQGRR-------- 314 (373)
T ss_dssp -------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSC--HHHHHHTTCC--------
T ss_pred cccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHH--HHHHHHcCCC--------
Confidence 3221 12233457889999999988999999999999999999999 677776533222 2222111100
Q ss_pred hhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhccc
Q 003855 732 ANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLDD 786 (791)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~~ 786 (791)
...+..++..+.+++.+||+.||++||++.|+++.|+++...+.++
T Consensus 315 ---------~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~~ 360 (373)
T 3c1x_A 315 ---------LLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE 360 (373)
T ss_dssp ---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCSC
T ss_pred ---------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcccc
Confidence 0111235567889999999999999999999999999998877654
No 113
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=1.5e-40 Score=348.19 Aligned_cols=267 Identities=21% Similarity=0.269 Sum_probs=204.7
Q ss_pred hccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEe
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 577 (791)
++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 57999999999999999999975 68999999987543 3345678899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCC
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGED 657 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~ 657 (791)
|+++ ++.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+......
T Consensus 82 ~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH----~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~- 155 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCH----SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV- 155 (292)
T ss_dssp CCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCC-
T ss_pred cCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH----hCCeecCCCCHHHEEEcCCCCEEEeecccceecCCcc-
Confidence 9965 777777766666999999999999999999999 6789999999999999999999999999998764332
Q ss_pred cceeecccccccccCCCccCCCC-CCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC---hhhhcc--
Q 003855 658 SVTQTMTMATIGYMAPEYGSEGI-VSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG---LTEVVD-- 731 (791)
Q Consensus 658 ~~~~~~~~g~~~y~aPE~~~~~~-~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~d-- 731 (791)
.......||+.|+|||++.+.. ++.++||||+||++|||++|..|+.........+........... ......
T Consensus 156 -~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 234 (292)
T 3o0g_A 156 -RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLP 234 (292)
T ss_dssp -SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGST
T ss_pred -ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccc
Confidence 2233456899999999887655 899999999999999999998886433222222333222211110 000000
Q ss_pred -hh----hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 732 -AN----LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 732 -~~----~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.. .............++..+.+++.+|++.||++|||+.|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 235 DYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp TCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 00 00000000011134567789999999999999999999975
No 114
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=3.7e-41 Score=378.09 Aligned_cols=256 Identities=25% Similarity=0.390 Sum_probs=212.7
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEec
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEF 578 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 578 (791)
.++|++.+.||+|+||.||+|++. ++..||||++..... ..+.+.+|+.++++++||||+++++++.+....++||||
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~ 297 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 297 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEc
Confidence 467889999999999999999986 488999999875532 356789999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCC
Q 003855 579 MPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGED 657 (791)
Q Consensus 579 ~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~ 657 (791)
+++|+|.+++... ...+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+++......
T Consensus 298 ~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH----~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~- 372 (495)
T 1opk_A 298 MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE----KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT- 372 (495)
T ss_dssp CTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC-
T ss_pred cCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH----hCCcccCCCChhhEEECCCCcEEEeecccceeccCCc-
Confidence 9999999999864 345899999999999999999999 6789999999999999999999999999998764332
Q ss_pred cceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhh
Q 003855 658 SVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVR 736 (791)
Q Consensus 658 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 736 (791)
........++..|+|||++.+..++.++|||||||++|||+| |+.||...... ...+.+.....
T Consensus 373 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~--~~~~~~~~~~~------------- 437 (495)
T 1opk_A 373 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLEKDYR------------- 437 (495)
T ss_dssp EECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHHHTTCC-------------
T ss_pred eeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCC-------------
Confidence 222233446789999999988899999999999999999999 99999764322 12222211110
Q ss_pred hHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHH
Q 003855 737 EEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIK 780 (791)
Q Consensus 737 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~ 780 (791)
...+..++..+.++|.+||+.||++|||+.++++.|+.+.
T Consensus 438 ----~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~ 477 (495)
T 1opk_A 438 ----MERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF 477 (495)
T ss_dssp ----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred ----CCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence 1112245677889999999999999999999999998763
No 115
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=1.1e-40 Score=360.78 Aligned_cols=252 Identities=19% Similarity=0.256 Sum_probs=198.8
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCeeeE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l 574 (791)
.++|++.+.||+|+||.||+|+.+ +++.||+|++.... ....+.+..|..++.++ +||||+++++++.+.+..++
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 478999999999999999999975 68899999997653 23344578899999887 89999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCC
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~ 654 (791)
||||+++|+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+....
T Consensus 131 V~E~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH----~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~ 205 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLH----ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 205 (396)
T ss_dssp EEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EEEcCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCEEeccCCHHHEEECCCCCEEEeecceeeeccc
Confidence 999999999999998654 3899999999999999999999 67899999999999999999999999999986332
Q ss_pred CCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhh
Q 003855 655 GEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANL 734 (791)
Q Consensus 655 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 734 (791)
.. ......+||+.|+|||++.+..++.++||||+||++|||++|+.||......+.... ...+.+...+
T Consensus 206 ~~--~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~---------~~~~~~~~~i 274 (396)
T 4dc2_A 206 PG--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQ---------NTEDYLFQVI 274 (396)
T ss_dssp TT--CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC---------------CCHHHHHHHH
T ss_pred CC--CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccch---------hhHHHHHHHH
Confidence 22 223345799999999999999999999999999999999999999965322111000 0000000000
Q ss_pred hhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCH
Q 003855 735 VREEQAFSAKMDCILSIMDLALDCCIESPDMRINV 769 (791)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~ 769 (791)
.... ...+..++.++.+++.+||+.||++||++
T Consensus 275 ~~~~--~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 275 LEKQ--IRIPRSLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp HHCC--CCCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred hccc--cCCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence 0000 00111345667899999999999999995
No 116
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=1.4e-40 Score=352.19 Aligned_cols=265 Identities=24% Similarity=0.421 Sum_probs=202.1
Q ss_pred HHhhccccccccCCCcceEEEEEEec----CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCC-
Q 003855 498 RATDEFNECNLLGTGSFGSVYKGTIS----DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPD- 570 (791)
Q Consensus 498 ~~~~~~~~~~~ig~G~~g~Vy~~~~~----~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~- 570 (791)
...++|.+.+.||+|+||.||+|... +++.||||++.... ....+.+.+|+.++++++||||+++++++.+..
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 110 (313)
T 3brb_A 31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSS 110 (313)
T ss_dssp CCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC---
T ss_pred cCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccc
Confidence 34578999999999999999999864 34589999987542 344577899999999999999999999997654
Q ss_pred ----eeeEEEecCCCCCHHHHHhh-----CCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcE
Q 003855 571 ----FKALVLEFMPNGSLEKWLYS-----HNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAA 641 (791)
Q Consensus 571 ----~~~lv~e~~~~g~L~~~l~~-----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~ 641 (791)
..++||||+++|+|.+++.. ....+++..++.++.|+++||.||| +.+|+||||||+||+++.++.+
T Consensus 111 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~dikp~NIli~~~~~~ 186 (313)
T 3brb_A 111 QGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS----NRNFLHRDLAARNCMLRDDMTV 186 (313)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH----TTTCCCCCCSGGGEEECTTSCE
T ss_pred cCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH----hCCcccCCCCcceEEEcCCCcE
Confidence 34899999999999999953 2345899999999999999999999 7789999999999999999999
Q ss_pred EEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHH
Q 003855 642 HVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKE 720 (791)
Q Consensus 642 kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~ 720 (791)
||+|||+++...............+++.|+|||.+.+..++.++||||||+++|||++ |..||...... .....+..
T Consensus 187 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~~~~~ 264 (313)
T 3brb_A 187 CVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNH--EMYDYLLH 264 (313)
T ss_dssp EECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHHHT
T ss_pred EEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHH--HHHHHHHc
Confidence 9999999987655433333344567889999999988999999999999999999999 88898763322 12221111
Q ss_pred hcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcc
Q 003855 721 SLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLD 785 (791)
Q Consensus 721 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~ 785 (791)
.... ..+..++..+.+++.+||+.||++||++.++++.|+++..+.++
T Consensus 265 ~~~~-----------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp~ 312 (313)
T 3brb_A 265 GHRL-----------------KQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLPD 312 (313)
T ss_dssp TCCC-----------------CCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC--
T ss_pred CCCC-----------------CCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCC
Confidence 1000 01123456788999999999999999999999999999877653
No 117
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=7.7e-41 Score=354.74 Aligned_cols=267 Identities=26% Similarity=0.407 Sum_probs=216.6
Q ss_pred HHHHHhhccccccccCCCcceEEEEEEe------cCCcEEEEEEeehhh-hHHHHHHHHHHHHHHhc-cCCccceeeeee
Q 003855 495 DIQRATDEFNECNLLGTGSFGSVYKGTI------SDGTDVAIKIFNLQL-ERAFRSFDSECEVLRNV-RHRNLIKILSSC 566 (791)
Q Consensus 495 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~ 566 (791)
......++|++.+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+.+++++ +||||+++++++
T Consensus 21 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 100 (316)
T 2xir_A 21 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGAC 100 (316)
T ss_dssp HHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEE
Confidence 3344468899999999999999999984 356889999987653 34456789999999999 799999999998
Q ss_pred ccCC-eeeEEEecCCCCCHHHHHhhCCC---------------CCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCC
Q 003855 567 SNPD-FKALVLEFMPNGSLEKWLYSHNY---------------FLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKP 630 (791)
Q Consensus 567 ~~~~-~~~lv~e~~~~g~L~~~l~~~~~---------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~ 630 (791)
...+ ..++||||+++|+|.+++..... .+++..+..++.|++.||.||| +.+|+||||||
T Consensus 101 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH----~~~i~H~dikp 176 (316)
T 2xir_A 101 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA----SRKCIHRDLAA 176 (316)
T ss_dssp CCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSG
T ss_pred ecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH----hCCcccccCcc
Confidence 7654 58999999999999999986543 2789999999999999999999 67899999999
Q ss_pred CCeEeCCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCcccc
Q 003855 631 TNILLDENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFT 709 (791)
Q Consensus 631 ~Nill~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~ 709 (791)
+||+++.++.+||+|||+++...............+|+.|+|||.+.+..++.++||||||+++|||+| |+.||.....
T Consensus 177 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~ 256 (316)
T 2xir_A 177 RNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI 256 (316)
T ss_dssp GGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCC
T ss_pred ceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccch
Confidence 999999999999999999987765544444445568899999999988899999999999999999998 9999976432
Q ss_pred CcchHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHh
Q 003855 710 GEMSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKF 783 (791)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~ 783 (791)
.+. ....+....... .+..++..+.+++.+||+.||++|||+.|+++.|+.+.+..
T Consensus 257 ~~~-~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 312 (316)
T 2xir_A 257 DEE-FCRRLKEGTRMR-----------------APDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 312 (316)
T ss_dssp SHH-HHHHHHHTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHhccCccCC-----------------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence 221 212111111100 11123466889999999999999999999999999987654
No 118
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=5.2e-41 Score=347.68 Aligned_cols=251 Identities=27% Similarity=0.416 Sum_probs=194.2
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhh----hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQL----ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|+..+.||+|+||.||+|++. ++.||||++.... ....+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 367899999999999999999984 8899999986543 23356788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCC---eEecCCCCCCeEeCC--------CCcEEEe
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAP---IIHCDLKPTNILLDE--------NMAAHVS 644 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~---i~H~dlk~~Nill~~--------~~~~kl~ 644 (791)
|||+++|+|.+++... .+++..+..++.|++.||+||| +.+ |+||||||+||+++. ++.+||+
T Consensus 85 ~e~~~~~~L~~~~~~~--~~~~~~~~~i~~~l~~~l~~lH----~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~ 158 (271)
T 3dtc_A 85 MEFARGGPLNRVLSGK--RIPPDILVNWAVQIARGMNYLH----DEAIVPIIHRDLKSSNILILQKVENGDLSNKILKIT 158 (271)
T ss_dssp EECCTTEEHHHHHTSS--CCCHHHHHHHHHHHHHHHHHHH----HSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEEC
T ss_pred EEcCCCCCHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHH----hCCCCceeecCCchHHEEEecccccccccCcceEEc
Confidence 9999999999999644 4899999999999999999999 445 999999999999986 7789999
Q ss_pred eeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCC
Q 003855 645 DFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPH 724 (791)
Q Consensus 645 Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 724 (791)
|||+++....... ....|++.|+|||.+.+..++.++||||||+++|||++|+.||........ ...+. ..
T Consensus 159 Dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~--~~~~~---~~ 229 (271)
T 3dtc_A 159 DFGLAREWHRTTK----MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAV--AYGVA---MN 229 (271)
T ss_dssp CCCC-----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHH--HHHHH---TS
T ss_pred cCCcccccccccc----cCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH--HHhhh---cC
Confidence 9999986643322 234689999999999888899999999999999999999999976322111 11000 00
Q ss_pred ChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHH
Q 003855 725 GLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKI 779 (791)
Q Consensus 725 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~ 779 (791)
.. ..+.+..++..+.+++.+||+.||++|||+.|+++.|+++
T Consensus 230 ~~-------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 230 KL-------------ALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp CC-------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred CC-------------CCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 00 0011123456788999999999999999999999999754
No 119
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.6e-41 Score=358.26 Aligned_cols=258 Identities=25% Similarity=0.433 Sum_probs=202.6
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcE----EEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTD----VAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKA 573 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 573 (791)
.++|++.+.||+|+||.||+|++. +++. ||+|.+.... ....+.+.+|+.++++++||||+++++++.... .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 92 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence 367999999999999999999964 4544 5777664332 344578889999999999999999999998765 78
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccC
Q 003855 574 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLG 653 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~ 653 (791)
+|+||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 93 ~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~ 168 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE----DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168 (327)
T ss_dssp EEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEEEETTEEEECCTTC-----
T ss_pred EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh----hCCCcCCCCCHHHEEEcCCCCEEEccCcceeEcc
Confidence 999999999999999987777999999999999999999999 6789999999999999999999999999998875
Q ss_pred CCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcch
Q 003855 654 EGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDA 732 (791)
Q Consensus 654 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 732 (791)
............+|+.|+|||.+.+..++.++|||||||++|||++ |+.||...... .....+.....
T Consensus 169 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~~~~~~~~--------- 237 (327)
T 3lzb_A 169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSILEKGER--------- 237 (327)
T ss_dssp -----------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHHTTCC---------
T ss_pred CccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHcCCC---------
Confidence 5444333444557889999999988999999999999999999999 99999764322 22222221110
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHH
Q 003855 733 NLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKV 781 (791)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~ 781 (791)
.+.+..++..+.+++.+||+.||++||++.|+++.|+++..
T Consensus 238 --------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 278 (327)
T 3lzb_A 238 --------LPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp --------CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred --------CCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 01112345668899999999999999999999999999864
No 120
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-40 Score=348.89 Aligned_cols=245 Identities=21% Similarity=0.231 Sum_probs=195.6
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|+..++||+|+||+||+|+.. +++.||||++.... .........|+..+.++ +||||+++++++.+++..++|
T Consensus 56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv 135 (311)
T 3p1a_A 56 QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQ 135 (311)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEE
Confidence 478999999999999999999976 79999999876432 23334455566665555 899999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+ +|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 136 ~e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~ 210 (311)
T 3p1a_A 136 TELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLH----SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTA 210 (311)
T ss_dssp EECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECGGGCEEECCCTTCEECC--
T ss_pred Eecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----HCCEecCCCCHHHEEECCCCCEEEccceeeeecccC
Confidence 9999 77999999877667999999999999999999999 678999999999999999999999999999876433
Q ss_pred CCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 656 EDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
. ......||++|+|||++.+ .++.++|||||||++|||++|..|+... ...... .... ..+
T Consensus 211 ~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~----~~~~~~----~~~~----~~~--- 271 (311)
T 3p1a_A 211 G---AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG----EGWQQL----RQGY----LPP--- 271 (311)
T ss_dssp -------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH----HHHHHH----TTTC----CCH---
T ss_pred C---CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc----cHHHHH----hccC----CCc---
Confidence 2 2233468999999998875 7899999999999999999997765431 111111 0000 000
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.....++.++.+++.+||+.||++|||+.|+++
T Consensus 272 ------~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 272 ------EFTAGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp ------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ------ccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 111235677889999999999999999999985
No 121
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=3.1e-40 Score=356.80 Aligned_cols=247 Identities=23% Similarity=0.335 Sum_probs=200.1
Q ss_pred cccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEecCCCCC
Q 003855 505 ECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEFMPNGS 583 (791)
Q Consensus 505 ~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g~ 583 (791)
..+.||+|+||.||+|+.. +|+.||+|++........+.+.+|++++++++||||+++++++.+.+..++||||+++|+
T Consensus 93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~ 172 (373)
T 2x4f_A 93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGE 172 (373)
T ss_dssp EEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCE
T ss_pred cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCc
Confidence 3568999999999999864 789999999987655566789999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEe--CCCCcEEEeeeccccccCCCCCccee
Q 003855 584 LEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILL--DENMAAHVSDFGISKLLGEGEDSVTQ 661 (791)
Q Consensus 584 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill--~~~~~~kl~Dfgla~~~~~~~~~~~~ 661 (791)
|.+++......+++..+..++.||+.||+||| +.+|+||||||+||++ +.++.+||+|||+++.+..... .
T Consensus 173 L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~---~ 245 (373)
T 2x4f_A 173 LFDRIIDESYNLTELDTILFMKQICEGIRHMH----QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK---L 245 (373)
T ss_dssp EHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB---C
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc---c
Confidence 99999877667999999999999999999999 6789999999999999 6778999999999988754332 2
Q ss_pred ecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhhHHhh
Q 003855 662 TMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREEQAF 741 (791)
Q Consensus 662 ~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 741 (791)
...+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.... ..+........... .
T Consensus 246 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~-~~~~~i~~~~~~~~-----~---------- 309 (373)
T 2x4f_A 246 KVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDA-ETLNNILACRWDLE-----D---------- 309 (373)
T ss_dssp CCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHHTCCCSC-----S----------
T ss_pred ccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHhccCCCC-----h----------
Confidence 2346899999999999899999999999999999999999999753221 11122211111000 0
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 742 SAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 742 ~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.....++.++.+++.+||+.||++|||+.|+++
T Consensus 310 ~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 310 EEFQDISEEAKEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred hhhccCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 011234567889999999999999999999987
No 122
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.7e-40 Score=348.95 Aligned_cols=272 Identities=22% Similarity=0.291 Sum_probs=210.5
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCC--eeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPD--FKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv 575 (791)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.... ..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence 367999999999999999999976 58999999997543 334567789999999999999999999987654 77999
Q ss_pred EecCCCCCHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEe----CCCCcEEEeeeccc
Q 003855 576 LEFMPNGSLEKWLYSHN--YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILL----DENMAAHVSDFGIS 649 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill----~~~~~~kl~Dfgla 649 (791)
|||+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||+|
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a 163 (319)
T 4euu_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR----ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAA 163 (319)
T ss_dssp EECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEEECTTSCEEEEECCCTTC
T ss_pred EeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH----HCCEecCCCCHHHEEEeccCCCCceEEEccCCCc
Confidence 99999999999998543 23899999999999999999999 6789999999999999 78888999999999
Q ss_pred cccCCCCCcceeecccccccccCCCccC--------CCCCCccccHHhHHHHHHHHHhCCCCCCccccCcc---hHHHHH
Q 003855 650 KLLGEGEDSVTQTMTMATIGYMAPEYGS--------EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEM---SLRRWV 718 (791)
Q Consensus 650 ~~~~~~~~~~~~~~~~g~~~y~aPE~~~--------~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~---~~~~~~ 718 (791)
+....... .....||+.|+|||++. +..++.++|||||||++|||+||+.||........ .+.+..
T Consensus 164 ~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~ 240 (319)
T 4euu_A 164 RELEDDEQ---FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKII 240 (319)
T ss_dssp EECCTTCC---BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHH
T ss_pred eecCCCCc---eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHh
Confidence 87754432 22346899999999865 57899999999999999999999999975332221 222222
Q ss_pred HHhcCCChhhhcch---hhhh---hHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHH
Q 003855 719 KESLPHGLTEVVDA---NLVR---EEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKK 778 (791)
Q Consensus 719 ~~~~~~~~~~~~d~---~~~~---~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~ 778 (791)
..........+... .... ..........++..+.+++.+||+.||++|||+.|+++....
T Consensus 241 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d 306 (319)
T 4euu_A 241 TGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSD 306 (319)
T ss_dssp HHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHH
T ss_pred cCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHH
Confidence 22222111110000 0000 000001123566788999999999999999999999988764
No 123
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.5e-41 Score=356.52 Aligned_cols=246 Identities=25% Similarity=0.407 Sum_probs=202.1
Q ss_pred hhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|++.+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+.+++.++||||+++++++.++...++|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 36799999999999999999996 578999999997543 22245788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+ +|+|.+++..... +++..+..++.|++.||.||| +.+|+||||||+||++++++.+||+|||+++.....
T Consensus 88 ~E~~-~g~l~~~l~~~~~-l~~~~~~~i~~qi~~aL~~LH----~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~ 161 (336)
T 3h4j_B 88 IEYA-GGELFDYIVEKKR-MTEDEGRRFFQQIICAIEYCH----RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDG 161 (336)
T ss_dssp ECCC-CEEHHHHHHHHCS-CCHHHHHHHHHHHHHHHHHHH----HHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTS
T ss_pred EECC-CCcHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH----HCCeEecCCchhhEEEcCCCCEEEEEeccceeccCC
Confidence 9999 7899999876543 899999999999999999999 678999999999999999999999999999876543
Q ss_pred CCcceeecccccccccCCCccCCCCC-CccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhh
Q 003855 656 EDSVTQTMTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANL 734 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 734 (791)
.. ....+||+.|+|||.+.+..+ +.++||||+||++|||++|+.||++...... ...+....
T Consensus 162 ~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~-------------~~~i~~~~- 224 (336)
T 3h4j_B 162 NF---LKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL-------------FKKVNSCV- 224 (336)
T ss_dssp BT---TCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC-------------BCCCCSSC-
T ss_pred cc---cccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH-------------HHHHHcCC-
Confidence 22 233469999999999988776 7899999999999999999999976322111 00000000
Q ss_pred hhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 735 VREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
...+..++..+.+++.+||+.||++|||+.|+++
T Consensus 225 ------~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 225 ------YVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp ------CCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred ------CCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 0001124466789999999999999999999976
No 124
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=6.7e-41 Score=357.20 Aligned_cols=250 Identities=24% Similarity=0.315 Sum_probs=203.6
Q ss_pred HHHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCe
Q 003855 497 QRATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDF 571 (791)
Q Consensus 497 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~ 571 (791)
....++|++.+.||+|+||.||+|+.+ +|+.||||++.... ....+.+..|..++..+ +||||+++++++.+.+.
T Consensus 13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~ 92 (345)
T 1xjd_A 13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN 92 (345)
T ss_dssp ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE
Confidence 445689999999999999999999975 68999999997653 33456678899999887 99999999999999999
Q ss_pred eeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccc
Q 003855 572 KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKL 651 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~ 651 (791)
.++||||+++|+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+|+.
T Consensus 93 ~~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH----~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~ 167 (345)
T 1xjd_A 93 LFFVMEYLNGGDLMYHIQSCH-KFDLSRATFYAAEIILGLQFLH----SKGIVYRDLKLDNILLDKDGHIKIADFGMCKE 167 (345)
T ss_dssp EEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred EEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeEeCCCChhhEEECCCCCEEEeEChhhhh
Confidence 999999999999999998654 3899999999999999999999 67899999999999999999999999999986
Q ss_pred cCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcc
Q 003855 652 LGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVD 731 (791)
Q Consensus 652 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d 731 (791)
...... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ....+.+......
T Consensus 168 ~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~~~~~i~~~~~~------- 236 (345)
T 1xjd_A 168 NMLGDA--KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE--EELFHSIRMDNPF------- 236 (345)
T ss_dssp CCCTTC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCCCC-------
T ss_pred cccCCC--cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH--HHHHHHHHhCCCC-------
Confidence 433221 23345799999999999999999999999999999999999999975321 1111111111000
Q ss_pred hhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHH-HHH
Q 003855 732 ANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVT-DAA 773 (791)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~-ev~ 773 (791)
.+..++.++.+++.+||+.||++||++. |++
T Consensus 237 -----------~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 237 -----------YPRWLEKEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp -----------CCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred -----------CCcccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 0112346678999999999999999997 554
No 125
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=7.6e-41 Score=364.26 Aligned_cols=257 Identities=20% Similarity=0.277 Sum_probs=206.5
Q ss_pred HHHHHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCC
Q 003855 495 DIQRATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPD 570 (791)
Q Consensus 495 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~ 570 (791)
+++...++|++.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+
T Consensus 63 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~ 142 (410)
T 3v8s_A 63 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR 142 (410)
T ss_dssp HHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred hcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECC
Confidence 34445689999999999999999999976 68999999997543 122345788999999999999999999999999
Q ss_pred eeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 571 FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 571 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
..++||||+++|+|.++++... +++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+
T Consensus 143 ~~~lV~E~~~gg~L~~~l~~~~--~~e~~~~~~~~qi~~aL~~LH----~~givHrDLKp~NILl~~~g~ikL~DFG~a~ 216 (410)
T 3v8s_A 143 YLYMVMEYMPGGDLVNLMSNYD--VPEKWARFYTAEVVLALDAIH----SMGFIHRDVKPDNMLLDKSGHLKLADFGTCM 216 (410)
T ss_dssp EEEEEECCCTTEEHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred EEEEEEeCCCCCcHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHH----HCCeEeccCCHHHeeECCCCCEEEeccceeE
Confidence 9999999999999999998654 899999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCcceeecccccccccCCCccCCCC----CCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCCh
Q 003855 651 LLGEGEDSVTQTMTMATIGYMAPEYGSEGI----VSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGL 726 (791)
Q Consensus 651 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~----~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 726 (791)
...... .......+||+.|+|||++.+.. ++.++|||||||++|||++|+.||...... ..+.......
T Consensus 217 ~~~~~~-~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~-~~~~~i~~~~----- 289 (410)
T 3v8s_A 217 KMNKEG-MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV-GTYSKIMNHK----- 289 (410)
T ss_dssp ECCTTS-EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHTHH-----
T ss_pred eeccCC-cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChh-hHHHHHHhcc-----
Confidence 765432 12233467999999999886654 889999999999999999999999753211 1111111000
Q ss_pred hhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCC--CCCHHHHHH
Q 003855 727 TEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDM--RINVTDAAA 774 (791)
Q Consensus 727 ~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~--RPt~~ev~~ 774 (791)
.....+....++.++.+++.+|++.+|++ ||++.||++
T Consensus 290 ----------~~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 290 ----------NSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp ----------HHCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred ----------ccccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 00001111234567889999999999998 999999986
No 126
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=2.7e-41 Score=375.18 Aligned_cols=259 Identities=27% Similarity=0.439 Sum_probs=206.9
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEecC
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEFM 579 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 579 (791)
.++|++.+.||+|+||.||+|.++++..||||++..... ..+.+.+|+.++++++||||+++++++.+ +..++||||+
T Consensus 183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~ 260 (452)
T 1fmk_A 183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYM 260 (452)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCC
T ss_pred hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhh
Confidence 467899999999999999999998888899999975432 34678999999999999999999999976 6789999999
Q ss_pred CCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCc
Q 003855 580 PNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDS 658 (791)
Q Consensus 580 ~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~ 658 (791)
++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+|||+++++.+||+|||+++.......
T Consensus 261 ~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH----~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~- 335 (452)
T 1fmk_A 261 SKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE----RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY- 335 (452)
T ss_dssp TTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------
T ss_pred cCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH----hCCeeCCCCChhhEEECCCCCEEECCCccceecCCCce-
Confidence 999999999853 345899999999999999999999 67899999999999999999999999999987654322
Q ss_pred ceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhh
Q 003855 659 VTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVRE 737 (791)
Q Consensus 659 ~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 737 (791)
.......++..|+|||.+.++.++.++|||||||++|||+| |+.||.+....+ ....+....
T Consensus 336 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~~~--------------- 398 (452)
T 1fmk_A 336 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--VLDQVERGY--------------- 398 (452)
T ss_dssp -------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHHHTTC---------------
T ss_pred ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCC---------------
Confidence 12223456789999999988899999999999999999999 999997642211 111111100
Q ss_pred HHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhc
Q 003855 738 EQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFL 784 (791)
Q Consensus 738 ~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~ 784 (791)
..+.+..++..+.+++.+||+.||++|||+.++++.|+.+.....
T Consensus 399 --~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~ 443 (452)
T 1fmk_A 399 --RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE 443 (452)
T ss_dssp --CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSC
T ss_pred --CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCC
Confidence 011122466778899999999999999999999999998765443
No 127
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=363.29 Aligned_cols=258 Identities=23% Similarity=0.315 Sum_probs=206.4
Q ss_pred HHHHHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCC
Q 003855 495 DIQRATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPD 570 (791)
Q Consensus 495 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~ 570 (791)
+.+...++|++.+.||+|+||.||+|+.+ +|+.||||++.... ....+.+.+|..++..++||||+++++++.+.+
T Consensus 55 ~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~ 134 (412)
T 2vd5_A 55 EVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDEN 134 (412)
T ss_dssp HHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSS
T ss_pred hccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCC
Confidence 33445689999999999999999999975 79999999997543 223345788999999999999999999999999
Q ss_pred eeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 571 FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 571 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
..++||||+++|+|.+++...+..+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+
T Consensus 135 ~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH----~~giiHrDLKp~NILld~~g~vkL~DFGla~ 210 (412)
T 2vd5_A 135 YLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVH----RLGYVHRDIKPDNILLDRCGHIRLADFGSCL 210 (412)
T ss_dssp EEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred EEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----HCCeeecccCHHHeeecCCCCEEEeechhhe
Confidence 999999999999999999876556999999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCcceeecccccccccCCCccC-------CCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcC
Q 003855 651 LLGEGEDSVTQTMTMATIGYMAPEYGS-------EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLP 723 (791)
Q Consensus 651 ~~~~~~~~~~~~~~~g~~~y~aPE~~~-------~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 723 (791)
....... ......+||+.|+|||++. ...++.++|||||||++|||++|+.||......+ .+...+...
T Consensus 211 ~~~~~~~-~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~-~~~~i~~~~-- 286 (412)
T 2vd5_A 211 KLRADGT-VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAE-TYGKIVHYK-- 286 (412)
T ss_dssp ECCTTSC-EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHTHH--
T ss_pred eccCCCc-cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHH-HHHHHHhcc--
Confidence 7654322 2233457999999999876 4678999999999999999999999997532111 111111000
Q ss_pred CChhhhcchhhhhhHHhhH-HHHHHHHHHHHHHhhccccCCCCC---CCHHHHHH
Q 003855 724 HGLTEVVDANLVREEQAFS-AKMDCILSIMDLALDCCIESPDMR---INVTDAAA 774 (791)
Q Consensus 724 ~~~~~~~d~~~~~~~~~~~-~~~~~~~~l~~li~~cl~~~P~~R---Pt~~ev~~ 774 (791)
.....+ ....++.++.+++.+||. +|++| |++.|+++
T Consensus 287 -------------~~~~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~ 327 (412)
T 2vd5_A 287 -------------EHLSLPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT 327 (412)
T ss_dssp -------------HHCCCC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred -------------cCcCCCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence 000000 012355778899999999 99998 58888864
No 128
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=3.6e-40 Score=358.78 Aligned_cols=250 Identities=23% Similarity=0.342 Sum_probs=197.1
Q ss_pred hccccccccCCCcceEEEEEEecCCcEEEEEEeehhh--hHHHHHHHHHHHHHHhcc--CCccceeeeeeccCCeeeEEE
Q 003855 501 DEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVR--HRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~lv~ 576 (791)
++|++.+.||+|+||.||+|...+++.||||++.... ....+.+.+|+.++++++ ||||+++++++...+..++||
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 5699999999999999999998889999999986543 445678899999999996 599999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~ 656 (791)
| +.+|+|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+|||++ ++.+||+|||+|+.+....
T Consensus 136 E-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH----~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~ 208 (390)
T 2zmd_A 136 E-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH----QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT 208 (390)
T ss_dssp E-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHH----TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC----
T ss_pred e-cCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCC
Confidence 9 56889999998765 4889999999999999999999 77899999999999996 5899999999998775443
Q ss_pred CcceeecccccccccCCCccCC-----------CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC
Q 003855 657 DSVTQTMTMATIGYMAPEYGSE-----------GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG 725 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~~~-----------~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 725 (791)
........+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.........+...+.......
T Consensus 209 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~ 288 (390)
T 2zmd_A 209 TSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIE 288 (390)
T ss_dssp -----CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTSCCC
T ss_pred ccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCccccCC
Confidence 3333345579999999998754 46899999999999999999999999753222111111111100000
Q ss_pred hhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 726 LTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 726 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
. +..++..+.+++.+||+.||++||++.|+++
T Consensus 289 ~-----------------~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 320 (390)
T 2zmd_A 289 F-----------------PDIPEKDLQDVLKCCLKRDPKQRISIPELLA 320 (390)
T ss_dssp C-----------------CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred C-----------------CccchHHHHHHHHHHcccChhhCCCHHHHhh
Confidence 0 0112356779999999999999999999985
No 129
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=7.7e-41 Score=346.34 Aligned_cols=252 Identities=24% Similarity=0.383 Sum_probs=205.4
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccC--CeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNP--DFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv 575 (791)
.++|+..+.||+|+||.||+|+++ ++.||||++.... ....+.+.+|+.++++++||||+++++++.++ ...++|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 367999999999999999999984 8899999987543 34456799999999999999999999999876 778999
Q ss_pred EecCCCCCHHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHccCCCCC--eEecCCCCCCeEeCCCCcEEEeeecccccc
Q 003855 576 LEFMPNGSLEKWLYSHNY-FLDILERLNIMIDVGSALEYLHHGHSSAP--IIHCDLKPTNILLDENMAAHVSDFGISKLL 652 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~~--i~H~dlk~~Nill~~~~~~kl~Dfgla~~~ 652 (791)
|||+++|+|.+++..... .+++..+..++.|++.||+||| +.+ |+||||||+||+++.++.++++|||++...
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~ 163 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH----TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSF 163 (271)
T ss_dssp EECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHT----TSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTT
T ss_pred ecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHh----cCCCceecCCCccceEEEcCCcceeEEeccceeee
Confidence 999999999999987543 5899999999999999999999 566 999999999999999999999999987643
Q ss_pred CCCCCcceeecccccccccCCCccCCCCCCc---cccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhh
Q 003855 653 GEGEDSVTQTMTMATIGYMAPEYGSEGIVSA---KCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEV 729 (791)
Q Consensus 653 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~---~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (791)
.. ....||+.|+|||.+.+..++. ++||||||+++|||++|+.||......+. ...........
T Consensus 164 ~~-------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-~~~~~~~~~~~----- 230 (271)
T 3kmu_A 164 QS-------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEI-GMKVALEGLRP----- 230 (271)
T ss_dssp SC-------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHH-HHHHHHSCCCC-----
T ss_pred cc-------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHH-HHHHHhcCCCC-----
Confidence 22 2245799999999887665544 79999999999999999999975322111 11111110000
Q ss_pred cchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHH
Q 003855 730 VDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKV 781 (791)
Q Consensus 730 ~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~ 781 (791)
..+..++..+.+++.+||+.||++|||+.|+++.|+++.+
T Consensus 231 ------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 231 ------------TIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp ------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred ------------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 0112345678899999999999999999999999998753
No 130
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.7e-41 Score=351.01 Aligned_cols=249 Identities=25% Similarity=0.328 Sum_probs=195.8
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhh--------------------------HHHHHHHHHHHHHH
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLE--------------------------RAFRSFDSECEVLR 552 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--------------------------~~~~~~~~e~~~l~ 552 (791)
.++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 368999999999999999999864 789999999864421 12356889999999
Q ss_pred hccCCccceeeeeecc--CCeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCC
Q 003855 553 NVRHRNLIKILSSCSN--PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKP 630 (791)
Q Consensus 553 ~l~h~niv~l~~~~~~--~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~ 630 (791)
+++||||+++++++.+ ....++||||+++|+|.+++.. ..+++..+..++.|++.||+||| +.+|+||||||
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~Dlkp 165 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL--KPLSEDQARFYFQDLIKGIEYLH----YQKIIHRDIKP 165 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS--SCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCG
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHH----HCCeeccCCCH
Confidence 9999999999999976 5678999999999999886543 34899999999999999999999 67899999999
Q ss_pred CCeEeCCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCC---CCccccHHhHHHHHHHHHhCCCCCCcc
Q 003855 631 TNILLDENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGI---VSAKCDVYSYGVLLMETFTRKRPTDEM 707 (791)
Q Consensus 631 ~Nill~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~---~~~~~Dv~s~G~vl~elltg~~p~~~~ 707 (791)
+||+++.++.+||+|||+++....... ......||+.|+|||.+.+.. ++.++|||||||++|||++|+.||...
T Consensus 166 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~ 243 (298)
T 2zv2_A 166 SNLLVGEDGHIKIADFGVSNEFKGSDA--LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE 243 (298)
T ss_dssp GGEEECTTSCEEECCCTTCEECSSSSC--EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred HHEEECCCCCEEEecCCCccccccccc--cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCc
Confidence 999999999999999999987654322 233457999999999987654 478899999999999999999999753
Q ss_pred ccCcchHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 708 FTGEMSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.. ......+...... .+....++..+.+++.+||+.||++||++.|+++
T Consensus 244 ~~--~~~~~~~~~~~~~----------------~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 244 RI--MCLHSKIKSQALE----------------FPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp SH--HHHHHHHHHCCCC----------------CCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred cH--HHHHHHHhcccCC----------------CCCccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 11 1111111110000 0011134566889999999999999999999875
No 131
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=8e-40 Score=341.68 Aligned_cols=263 Identities=23% Similarity=0.402 Sum_probs=214.1
Q ss_pred hcccccc-ccCCCcceEEEEEEec---CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 501 DEFNECN-LLGTGSFGSVYKGTIS---DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 501 ~~~~~~~-~ig~G~~g~Vy~~~~~---~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
++|.+.+ .||+|+||.||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++ ..+..++|
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv 87 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLV 87 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEE
Confidence 5666666 9999999999999853 67889999997643 34567889999999999999999999999 45568999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+++|+|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~ 163 (287)
T 1u59_A 88 MEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE----EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGAD 163 (287)
T ss_dssp EECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTC
T ss_pred EEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHH----HCCEeeCCCchheEEEcCCCCEEECcccceeeeccC
Confidence 9999999999999877667999999999999999999999 678999999999999999999999999999887543
Q ss_pred CCcc-eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchh
Q 003855 656 EDSV-TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDAN 733 (791)
Q Consensus 656 ~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 733 (791)
.... ......+|+.|+|||.+.+..++.++||||||+++|||++ |+.||..... ......+......
T Consensus 164 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~i~~~~~~--------- 232 (287)
T 1u59_A 164 DSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG--PEVMAFIEQGKRM--------- 232 (287)
T ss_dssp SCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT--HHHHHHHHTTCCC---------
T ss_pred cceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH--HHHHHHHhcCCcC---------
Confidence 3221 1223356889999999988889999999999999999998 9999976322 1222222111100
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcccc
Q 003855 734 LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLDDA 787 (791)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~~~ 787 (791)
..+..++..+.+++.+||+.||++||++.|+++.|.++........
T Consensus 233 --------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~ 278 (287)
T 1u59_A 233 --------ECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKV 278 (287)
T ss_dssp --------CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTC
T ss_pred --------CCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCCcc
Confidence 0112455778899999999999999999999999999976654433
No 132
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=3.8e-40 Score=359.74 Aligned_cols=271 Identities=18% Similarity=0.239 Sum_probs=206.2
Q ss_pred hhccccccccCCC--cceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeE
Q 003855 500 TDEFNECNLLGTG--SFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 500 ~~~~~~~~~ig~G--~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 574 (791)
.++|++.+.||+| +||.||+|+.. +++.||||++.... .+..+.+.+|+.++++++||||+++++++.+.+..++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 103 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence 4689999999999 99999999976 79999999997654 4456778899999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccC
Q 003855 575 VLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLG 653 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~ 653 (791)
||||+++|+|.+++... ...+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||.+....
T Consensus 104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH----~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~ 179 (389)
T 3gni_B 104 VTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH----HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMI 179 (389)
T ss_dssp EEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred EEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH----hCCeecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence 99999999999999865 345899999999999999999999 6789999999999999999999999999986543
Q ss_pred CCCC-----cceeecccccccccCCCccCC--CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC-
Q 003855 654 EGED-----SVTQTMTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG- 725 (791)
Q Consensus 654 ~~~~-----~~~~~~~~g~~~y~aPE~~~~--~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~- 725 (791)
.... .......+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+........ ..+....+..
T Consensus 180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~-~~~~~~~~~~~ 258 (389)
T 3gni_B 180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLL-EKLNGTVPCLL 258 (389)
T ss_dssp ETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHH-HC---------
T ss_pred cccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHH-HHhcCCCCccc
Confidence 2211 111222468999999999877 679999999999999999999999997643332211 1111110000
Q ss_pred ----------------------hhhhcchh----hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHH
Q 003855 726 ----------------------LTEVVDAN----LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAK 775 (791)
Q Consensus 726 ----------------------~~~~~d~~----~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~ 775 (791)
..+..... ........+....++..+.+++.+||+.||++|||+.|+++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~h 334 (389)
T 3gni_B 259 DTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNH 334 (389)
T ss_dssp -----------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred cccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcC
Confidence 00000000 000000111223456779999999999999999999999853
No 133
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.7e-40 Score=347.40 Aligned_cols=263 Identities=23% Similarity=0.365 Sum_probs=210.5
Q ss_pred ccccccccCCCcceEEEEEEec-C---CcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCee-eEE
Q 003855 502 EFNECNLLGTGSFGSVYKGTIS-D---GTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFK-ALV 575 (791)
Q Consensus 502 ~~~~~~~ig~G~~g~Vy~~~~~-~---~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~-~lv 575 (791)
.|...+.||+|+||.||+|++. + +..||+|++.... ....+.+.+|+.++++++||||+++++++.+.+.. ++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 4666789999999999999853 2 2379999987543 34567889999999999999999999999776655 899
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+.+|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 102 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH----~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~ 177 (298)
T 3pls_A 102 LPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLA----EQKFVHRDLAARNCMLDESFTVKVADFGLARDILDR 177 (298)
T ss_dssp ECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTG
T ss_pred EecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH----hCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCC
Confidence 9999999999999987677899999999999999999999 678999999999999999999999999999866443
Q ss_pred CC--cceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchh
Q 003855 656 ED--SVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDAN 733 (791)
Q Consensus 656 ~~--~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 733 (791)
.. ........+++.|+|||...+..++.++||||||+++|||++|..|+..... .......+......
T Consensus 178 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~-~~~~~~~~~~~~~~--------- 247 (298)
T 3pls_A 178 EYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHID-PFDLTHFLAQGRRL--------- 247 (298)
T ss_dssp GGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC-GGGHHHHHHTTCCC---------
T ss_pred cccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCC-HHHHHHHhhcCCCC---------
Confidence 21 1122334578899999999999999999999999999999996665433222 22222222221111
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhccc
Q 003855 734 LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLDD 786 (791)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~~ 786 (791)
+.+..++..+.+++.+||+.||++|||+.|+++.|+++..+...+
T Consensus 248 --------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~~ 292 (298)
T 3pls_A 248 --------PQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLGD 292 (298)
T ss_dssp --------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCSC
T ss_pred --------CCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhcc
Confidence 111234566889999999999999999999999999998877654
No 134
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=2.2e-40 Score=348.03 Aligned_cols=263 Identities=24% Similarity=0.395 Sum_probs=208.5
Q ss_pred hccccccccCCCcceEEEEEEecC----CcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeee-ccCCeeeE
Q 003855 501 DEFNECNLLGTGSFGSVYKGTISD----GTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSC-SNPDFKAL 574 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~l 574 (791)
.+|++.+.||+|+||.||+|+..+ +..||+|.+.... ....+.+.+|+.++++++||||+++++++ ...+..++
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 104 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 104 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence 568889999999999999998642 2358999886533 34557789999999999999999999986 45567899
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCC
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~ 654 (791)
||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 105 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH----~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 180 (298)
T 3f66_A 105 VLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLA----SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD 180 (298)
T ss_dssp EEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSC
T ss_pred EEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH----hCCccCCCCchheEEECCCCCEEECcccccccccc
Confidence 99999999999999877777899999999999999999999 67899999999999999999999999999987654
Q ss_pred CCCc--ceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcc
Q 003855 655 GEDS--VTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVD 731 (791)
Q Consensus 655 ~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d 731 (791)
.... .......+|+.|+|||.+.+..++.++||||+|+++|||++ |.+||...... .....+......
T Consensus 181 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~------- 251 (298)
T 3f66_A 181 KEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF--DITVYLLQGRRL------- 251 (298)
T ss_dssp GGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTT--THHHHHHTTCCC-------
T ss_pred cchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHH--HHHHHHhcCCCC-------
Confidence 3221 22333457889999999988899999999999999999999 55566543221 111111111100
Q ss_pred hhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhccc
Q 003855 732 ANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLDD 786 (791)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~~ 786 (791)
..+..++..+.+++.+||+.||++||++.|+++.|+++...+..+
T Consensus 252 ----------~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~~ 296 (298)
T 3f66_A 252 ----------LQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE 296 (298)
T ss_dssp ----------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSCCS
T ss_pred ----------CCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhccC
Confidence 001124466889999999999999999999999999998876543
No 135
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.7e-39 Score=360.47 Aligned_cols=348 Identities=26% Similarity=0.394 Sum_probs=283.0
Q ss_pred CCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCE
Q 003855 11 NLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVA 90 (791)
Q Consensus 11 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 90 (791)
.+++|+.|++++|.++.+ | .+..+++|++|+|++|.++ .+|. +. .+++|++|+|++|.+++..+ |.++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccC-Cchh-hh-ccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 467899999999999854 4 4889999999999999998 6666 44 48999999999999997655 999999999
Q ss_pred EeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhh
Q 003855 91 LDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQ 170 (791)
Q Consensus 91 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 170 (791)
|+|++|.++++.+ |.++++|+.|++++|++..++ .+..+++|++|+++ |.+.+..+ +..+ ++|+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~l~-~~~~~~~~--~~~l-~~L~ 180 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS----------ALSGLTSLQQLSFG-NQVTDLKP--LANL-TTLE 180 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG----------GGTTCTTCSEEEEE-ESCCCCGG--GTTC-TTCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh----------hhccCCcccEeecC-CcccCchh--hccC-CCCC
Confidence 9999999987654 999999999999999998753 37889999999997 55554322 4433 5688
Q ss_pred hhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCc
Q 003855 171 KFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNK 250 (791)
Q Consensus 171 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 250 (791)
+|++++|.+.+. ..+..+++|+.|++++|.+++..+ ++.+++|++|++++|++++. ..+..+++|+.|++++|.
T Consensus 181 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 181 RLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred EEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCc
Confidence 888888888754 347888888888888888886554 67788888888888888743 467788888888888888
Q ss_pred cCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcc
Q 003855 251 LSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPST 330 (791)
Q Consensus 251 i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 330 (791)
+++..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..|
T Consensus 255 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-- 326 (466)
T 1o6v_A 255 ISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-- 326 (466)
T ss_dssp CCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--
T ss_pred cccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--
Confidence 886544 7888888888888888886544 7788888888888888876543 7788888888888888886554
Q ss_pred hhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccC
Q 003855 331 IGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEI 399 (791)
Q Consensus 331 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~ 399 (791)
+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++.+
T Consensus 327 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCc
Confidence 77888888888888888854 467888888888888888887776 788888888888888888754
No 136
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=5.7e-41 Score=350.86 Aligned_cols=253 Identities=22% Similarity=0.341 Sum_probs=205.4
Q ss_pred hhccccccccCCCcceEEEEEEec-CC-------cEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DG-------TDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDF 571 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 571 (791)
.++|++.+.||+|+||.||+|+.. ++ ..||+|++........+.+.+|+.++++++||||+++++++.+++.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE 86 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence 468999999999999999999865 33 5799999987766677889999999999999999999999999999
Q ss_pred eeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCc--------EEE
Q 003855 572 KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMA--------AHV 643 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~--------~kl 643 (791)
.++||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||
T Consensus 87 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl 162 (289)
T 4fvq_A 87 NILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLE----ENTLIHGNVCAKNILLIREEDRKTGNPPFIKL 162 (289)
T ss_dssp CEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEEEECCBGGGTBCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHh----hCCeECCCcCcceEEEecCCcccccccceeee
Confidence 99999999999999999987766999999999999999999999 678999999999999998887 999
Q ss_pred eeeccccccCCCCCcceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhc
Q 003855 644 SDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESL 722 (791)
Q Consensus 644 ~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 722 (791)
+|||+++..... ....|++.|+|||.+.+ ..++.++|||||||++|||++|..|+........ ........
T Consensus 163 ~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~-~~~~~~~~- 234 (289)
T 4fvq_A 163 SDPGISITVLPK------DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQR-KLQFYEDR- 234 (289)
T ss_dssp CCCCSCTTTSCH------HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH-HHHHHHTT-
T ss_pred ccCcccccccCc------cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHH-HHHHhhcc-
Confidence 999999754321 22357889999998877 7799999999999999999996554432111111 11111110
Q ss_pred CCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 723 PHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 723 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
... +..++.++.+++.+||+.||++|||+.|+++.|+++...
T Consensus 235 -~~~-----------------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p 276 (289)
T 4fvq_A 235 -HQL-----------------PAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTP 276 (289)
T ss_dssp -CCC-----------------CCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC--
T ss_pred -CCC-----------------CCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCC
Confidence 000 011234567999999999999999999999999988543
No 137
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=3.3e-40 Score=352.59 Aligned_cols=249 Identities=20% Similarity=0.280 Sum_probs=200.4
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCeeeE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l 574 (791)
.++|++.+.||+|+||.||+|+.+ +++.||+|++.... ....+.+..|..+++++ +||||+++++++.+....++
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 87 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 87 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence 367999999999999999999975 68999999997653 34456788899999988 89999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCC
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~ 654 (791)
||||+++|+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+|+....
T Consensus 88 v~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH----~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~ 162 (345)
T 3a8x_A 88 VIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLH----ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 162 (345)
T ss_dssp EECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCC
T ss_pred EEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCceecCCCHHHEEECCCCCEEEEeccccccccC
Confidence 999999999999998654 3899999999999999999999 67899999999999999999999999999986432
Q ss_pred CCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcch---HHHHHHHhcCCChhhhcc
Q 003855 655 GEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMS---LRRWVKESLPHGLTEVVD 731 (791)
Q Consensus 655 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~d 731 (791)
... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||......... ....+..
T Consensus 163 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~----------- 229 (345)
T 3a8x_A 163 PGD--TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQ----------- 229 (345)
T ss_dssp TTC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHH-----------
T ss_pred CCC--cccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHH-----------
Confidence 221 233457999999999999999999999999999999999999999753221100 0000000
Q ss_pred hhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCH
Q 003855 732 ANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINV 769 (791)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~ 769 (791)
.+.... ...+..++..+.+++.+||+.||++||++
T Consensus 230 -~i~~~~--~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 230 -VILEKQ--IRIPRSLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp -HHHHCC--CCCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred -HHHcCC--CCCCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence 000000 00111345678899999999999999996
No 138
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.6e-40 Score=352.68 Aligned_cols=261 Identities=26% Similarity=0.452 Sum_probs=206.0
Q ss_pred hccccccccCCCcceEEEEEEecC-----CcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeE
Q 003855 501 DEFNECNLLGTGSFGSVYKGTISD-----GTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 574 (791)
++|...+.||+|+||.||+|.... +..||||++.... ......+.+|+.++++++||||+++++++.+.+..++
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 123 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI 123 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence 567788999999999999998642 2459999987543 3445678999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCC
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~ 654 (791)
||||+++|+|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 124 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~ 199 (333)
T 1mqb_A 124 ITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA----NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLED 199 (333)
T ss_dssp EEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH----hCCeeCCCCChheEEECCCCcEEECCCCcchhhcc
Confidence 99999999999999987667999999999999999999999 67899999999999999999999999999987654
Q ss_pred CCCc-ceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcch
Q 003855 655 GEDS-VTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDA 732 (791)
Q Consensus 655 ~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 732 (791)
.... .......+|..|+|||.+.+..++.++|||||||++|||++ |+.||...... .....+....
T Consensus 200 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~--~~~~~~~~~~---------- 267 (333)
T 1mqb_A 200 DPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH--EVMKAINDGF---------- 267 (333)
T ss_dssp -----------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHTTC----------
T ss_pred ccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHHCCC----------
Confidence 3221 12222346788999999988899999999999999999999 99999653221 1111111100
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhc
Q 003855 733 NLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFL 784 (791)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~ 784 (791)
..+.+..++..+.+++.+||+.||++||++.|+++.|+++.+...
T Consensus 268 -------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~ 312 (333)
T 1mqb_A 268 -------RLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPD 312 (333)
T ss_dssp -------CCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGG
T ss_pred -------cCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcch
Confidence 001112355678899999999999999999999999999876543
No 139
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=9.4e-41 Score=348.85 Aligned_cols=266 Identities=23% Similarity=0.301 Sum_probs=202.7
Q ss_pred hccccccccCCCcceEEEEEEecCCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEec
Q 003855 501 DEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEF 578 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 578 (791)
++|++.+.||+|+||.||+|+..+|+.||+|++.... ....+.+.+|+.++++++||||+++++++.+++..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 5789999999999999999999889999999986543 22346788999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCc
Q 003855 579 MPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDS 658 (791)
Q Consensus 579 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~ 658 (791)
+++ +|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 82 ~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~- 155 (288)
T 1ob3_A 82 LDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH----DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR- 155 (288)
T ss_dssp CSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC----
T ss_pred cCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH----HCCeecCCCCHHHEEEcCCCCEEEeECccccccCcccc-
Confidence 975 999999876666999999999999999999999 67899999999999999999999999999987643221
Q ss_pred ceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCC---Chhhh-----
Q 003855 659 VTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPH---GLTEV----- 729 (791)
Q Consensus 659 ~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~----- 729 (791)
......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... ..+.+........ .....
T Consensus 156 -~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (288)
T 1ob3_A 156 -KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEA-DQLMRIFRILGTPNSKNWPNVTELPK 233 (288)
T ss_dssp -------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCCTTTSTTGGGSTT
T ss_pred -ccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHHCCCChhhchhhhcccc
Confidence 2233468999999998865 45899999999999999999999999764221 1122222211110 00000
Q ss_pred cchhhhhhH--HhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 730 VDANLVREE--QAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 730 ~d~~~~~~~--~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.++.+.... ........++.++.+++.+||+.||++|||+.|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 234 YDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp CCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred cccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 000000000 000001134567889999999999999999999975
No 140
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=2.7e-40 Score=353.86 Aligned_cols=245 Identities=24% Similarity=0.253 Sum_probs=204.4
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|+..+.||+|+||.||+|+.. +|+.||+|++.... ....+.+.+|+.+++.++||||+++++++.+....++|
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 119 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV 119 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence 368999999999999999999975 78999999997653 23456788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 120 ~e~~~gg~L~~~l~~~~~-~~~~~~~~~~~qi~~aL~~LH----~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~ 194 (350)
T 1rdq_E 120 MEYVAGGEMFSHLRRIGR-FSEPHARFYAAQIVLTFEYLH----SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR 194 (350)
T ss_dssp EECCTTCBHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred EcCCCCCcHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH----HCCcccccCccceEEECCCCCEEEcccccceeccCC
Confidence 999999999999986543 899999999999999999999 678999999999999999999999999999876432
Q ss_pred CCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 656 EDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
....+||+.|+|||++.+..++.++|||||||++|||++|+.||...... ...........
T Consensus 195 -----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~-~~~~~i~~~~~------------- 255 (350)
T 1rdq_E 195 -----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPI-QIYEKIVSGKV------------- 255 (350)
T ss_dssp -----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHCCC-------------
T ss_pred -----cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHH-HHHHHHHcCCC-------------
Confidence 22346899999999999999999999999999999999999999753211 11111111100
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCC-----HHHHHH
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRIN-----VTDAAA 774 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt-----~~ev~~ 774 (791)
..+..++..+.+++.+||+.||++||+ +.|+++
T Consensus 256 ------~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 256 ------RFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp ------CCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred ------CCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 001134566889999999999999998 777764
No 141
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=1e-39 Score=345.03 Aligned_cols=267 Identities=22% Similarity=0.314 Sum_probs=203.8
Q ss_pred hhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehh---hhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQ---LERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|++.+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 46799999999999999999996 47899999998753 244567788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccccc
Q 003855 576 LEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLL 652 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~ 652 (791)
|||+++|+|.+++.. ....+++..+..++.|++.||.||| +.+++||||||+||+++.++.+||+|||+++..
T Consensus 111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH----~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~ 186 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH----SRRVMHRDIKPANVFITATGVVKLGDLGLGRFF 186 (310)
T ss_dssp EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTSCEEECCC------
T ss_pred EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh----hCCeeCCCCcHHHEEEcCCCCEEEEeccceeee
Confidence 999999999999974 3456899999999999999999999 678999999999999999999999999999876
Q ss_pred CCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcch
Q 003855 653 GEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDA 732 (791)
Q Consensus 653 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 732 (791)
..... ......|++.|+|||.+.+..++.++||||||+++|||++|+.||.............+.. ......
T Consensus 187 ~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~---~~~~~~--- 258 (310)
T 2wqm_A 187 SSKTT--AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQ---CDYPPL--- 258 (310)
T ss_dssp --------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHT---TCSCCC---
T ss_pred cCCCc--cccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhc---ccCCCC---
Confidence 43321 1223468999999999999999999999999999999999999987532221112111111 000000
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhccccc
Q 003855 733 NLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLDDAS 788 (791)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~~~~ 788 (791)
....++..+.+++.+||+.||++||++.++++.|++++....++-+
T Consensus 259 ----------~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~~~~ 304 (310)
T 2wqm_A 259 ----------PSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTASSLE 304 (310)
T ss_dssp ----------CTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC----
T ss_pred ----------cccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhhhhh
Confidence 0113456788999999999999999999999999999988776543
No 142
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=3.5e-40 Score=349.81 Aligned_cols=266 Identities=22% Similarity=0.263 Sum_probs=210.5
Q ss_pred hhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeec----cCCeeeE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCS----NPDFKAL 574 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~----~~~~~~l 574 (791)
.++|++.+.||+|+||.||+|+. .+++.||||++........+.+.+|+.++++++||||+++++++. .....++
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 107 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL 107 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence 36899999999999999999997 578999999987666666778899999999999999999999986 3457889
Q ss_pred EEecCCCCCHHHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccc
Q 003855 575 VLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKL 651 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~ 651 (791)
||||+++|+|.+++.. ....+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH----~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~ 183 (317)
T 2buj_A 108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH----AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQ 183 (317)
T ss_dssp EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTSCEEECCCSSCEE
T ss_pred EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----hCCcccCCCCHHHEEEcCCCCEEEEecCcchh
Confidence 9999999999999985 3556899999999999999999999 67899999999999999999999999999876
Q ss_pred cCCCCCcc-------eeecccccccccCCCccCCCC---CCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHh
Q 003855 652 LGEGEDSV-------TQTMTMATIGYMAPEYGSEGI---VSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKES 721 (791)
Q Consensus 652 ~~~~~~~~-------~~~~~~g~~~y~aPE~~~~~~---~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 721 (791)
........ ......||+.|+|||.+.... ++.++||||||+++|||++|+.||+............+...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~ 263 (317)
T 2buj_A 184 ACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQ 263 (317)
T ss_dssp SCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC
T ss_pred cccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhcc
Confidence 53211110 012235799999999887543 78899999999999999999999975333222222211110
Q ss_pred cCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhccc
Q 003855 722 LPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLDD 786 (791)
Q Consensus 722 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~~ 786 (791)
. ..+....++..+.+++.+||+.||++||++.|+++.|+.+....+..
T Consensus 264 ~-----------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~~~ 311 (317)
T 2buj_A 264 L-----------------SIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQ 311 (317)
T ss_dssp -------------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCCC-
T ss_pred C-----------------CCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCCCC
Confidence 0 00111234567889999999999999999999999999886554443
No 143
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=2.2e-40 Score=344.79 Aligned_cols=259 Identities=21% Similarity=0.333 Sum_probs=208.4
Q ss_pred hhccccccccCCCcceEEEEEEecC----CcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISD----GTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 574 (791)
.++|++.+.||+|+||.||+|++.+ +..||||++.... ....+.+.+|+.++++++||||+++++++.++ ..++
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~ 89 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE-PTWI 89 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS-SCEE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC-CCEE
Confidence 4789999999999999999998642 3469999987653 34567889999999999999999999998754 5689
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCC
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~ 654 (791)
||||+++|+|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 90 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 165 (281)
T 3cc6_A 90 IMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLE----SINCVHRDIAVRNILVASPECVKLGDFGLSRYIED 165 (281)
T ss_dssp EEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC--
T ss_pred EEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCccceEEECCCCcEEeCccCCCccccc
Confidence 99999999999999876666899999999999999999999 67899999999999999999999999999987654
Q ss_pred CCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchh
Q 003855 655 GEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDAN 733 (791)
Q Consensus 655 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 733 (791)
... .......+++.|+|||...+..++.++||||||+++|||+| |+.||...... .....+......
T Consensus 166 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~--~~~~~~~~~~~~--------- 233 (281)
T 3cc6_A 166 EDY-YKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENK--DVIGVLEKGDRL--------- 233 (281)
T ss_dssp --------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGG--GHHHHHHHTCCC---------
T ss_pred ccc-cccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChH--HHHHHHhcCCCC---------
Confidence 322 12233457889999999988889999999999999999998 99999753222 122222111100
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHh
Q 003855 734 LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKF 783 (791)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~ 783 (791)
+.+..++..+.+++.+||+.||++||++.|+++.|+++.+..
T Consensus 234 --------~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~ 275 (281)
T 3cc6_A 234 --------PKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQME 275 (281)
T ss_dssp --------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred --------CCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHhh
Confidence 111134566889999999999999999999999999987654
No 144
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=4.9e-40 Score=351.11 Aligned_cols=251 Identities=24% Similarity=0.334 Sum_probs=198.3
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCC------
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPD------ 570 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------ 570 (791)
..++|++.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.++++++||||+++++++.+..
T Consensus 4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 83 (332)
T 3qd2_B 4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE 83 (332)
T ss_dssp HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence 3578999999999999999999986 89999999987543 345578899999999999999999999885433
Q ss_pred ---------------------------------------------------eeeEEEecCCCCCHHHHHhhCCC--CCCH
Q 003855 571 ---------------------------------------------------FKALVLEFMPNGSLEKWLYSHNY--FLDI 597 (791)
Q Consensus 571 ---------------------------------------------------~~~lv~e~~~~g~L~~~l~~~~~--~~~~ 597 (791)
..++||||+++|+|.+++..... ..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~ 163 (332)
T 3qd2_B 84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREH 163 (332)
T ss_dssp HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCH
T ss_pred hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhh
Confidence 37899999999999999986532 3566
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCc----------ceeeccccc
Q 003855 598 LERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDS----------VTQTMTMAT 667 (791)
Q Consensus 598 ~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~----------~~~~~~~g~ 667 (791)
..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++........ .......||
T Consensus 164 ~~~~~i~~qi~~aL~~LH----~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt 239 (332)
T 3qd2_B 164 GVCLHIFIQIAEAVEFLH----SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGT 239 (332)
T ss_dssp HHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-C
T ss_pred HHHHHHHHHHHHHHHHHH----hCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCC
Confidence 778999999999999999 678999999999999999999999999999887654221 122335699
Q ss_pred ccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHH
Q 003855 668 IGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDC 747 (791)
Q Consensus 668 ~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 747 (791)
+.|+|||.+.+..++.++|||||||++|||++|..|+.... .......... ........
T Consensus 240 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~-------~~~~~~~~~~--------------~~~~~~~~ 298 (332)
T 3qd2_B 240 KLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERV-------RIITDVRNLK--------------FPLLFTQK 298 (332)
T ss_dssp GGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHH-------HHHHHHHTTC--------------CCHHHHHH
T ss_pred cCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHH-------HHHHHhhccC--------------CCcccccC
Confidence 99999999998899999999999999999999877643210 1111000000 00111234
Q ss_pred HHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 748 ILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 748 ~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
+..+.+++.+||+.||++|||+.|+++
T Consensus 299 ~~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 299 YPQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp CHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred ChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 466789999999999999999999986
No 145
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=4.3e-40 Score=353.00 Aligned_cols=251 Identities=23% Similarity=0.322 Sum_probs=190.4
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEe
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 577 (791)
..++|++.+.||+|+||.||+|+.. +++.||||++.... ..+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 128 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE 128 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence 3567999999999999999999976 68899999987553 23567889999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCC---CCcEEEeeeccccccCC
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDE---NMAAHVSDFGISKLLGE 654 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~---~~~~kl~Dfgla~~~~~ 654 (791)
|+++|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++. ++.+||+|||+++....
T Consensus 129 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~ 203 (349)
T 2w4o_A 129 LVTGGELFDRIVEKG-YYSERDAADAVKQILEAVAYLH----ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEH 203 (349)
T ss_dssp CCCSCBHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEESSSSTTCCEEECCCC-------
T ss_pred eCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeEecCCCcccEEEecCCCCCCEEEccCccccccCc
Confidence 999999999998654 4899999999999999999999 678999999999999975 89999999999987643
Q ss_pred CCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhh
Q 003855 655 GEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANL 734 (791)
Q Consensus 655 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 734 (791)
.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||.........+......... .. .
T Consensus 204 ~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~-~~----~--- 272 (349)
T 2w4o_A 204 QV---LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYY-FI----S--- 272 (349)
T ss_dssp ------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCC-CC----T---
T ss_pred cc---ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCc-cC----C---
Confidence 22 1233568999999999999899999999999999999999999997532222111111111000 00 0
Q ss_pred hhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 735 VREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
+....++.++.+++.+||+.||++|||+.|+++
T Consensus 273 -------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 273 -------PWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp -------TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred -------chhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 011134567889999999999999999999986
No 146
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=7e-40 Score=340.15 Aligned_cols=254 Identities=21% Similarity=0.330 Sum_probs=208.7
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
..++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 84 (276)
T 2yex_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL 84 (276)
T ss_dssp HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEE
Confidence 3478999999999999999999975 78999999987543 344577889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~ 656 (791)
||+++|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||.+..+....
T Consensus 85 e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 159 (276)
T 2yex_A 85 EYCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLH----GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNN 159 (276)
T ss_dssp ECCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred EecCCCcHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHH----hCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCc
Confidence 9999999999987543 4899999999999999999999 6789999999999999999999999999998764332
Q ss_pred CcceeecccccccccCCCccCCCCC-CccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 657 DSVTQTMTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
.........|++.|+|||.+.+..+ +.++||||||+++|||++|+.||............|......
T Consensus 160 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~------------ 227 (276)
T 2yex_A 160 RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTY------------ 227 (276)
T ss_dssp EECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTT------------
T ss_pred chhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccc------------
Confidence 2222334568999999999877665 789999999999999999999998754433333333221100
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
......++..+.+++.+||+.||++|||+.|+++
T Consensus 228 -----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 228 -----LNPWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp -----STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -----cCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 0011134566789999999999999999999976
No 147
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=7.4e-40 Score=357.22 Aligned_cols=270 Identities=24% Similarity=0.292 Sum_probs=194.7
Q ss_pred HHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehh--hhHHHHHHHHHHHHHHhcc-CCccceeeeeeccC--Ce
Q 003855 498 RATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQ--LERAFRSFDSECEVLRNVR-HRNLIKILSSCSNP--DF 571 (791)
Q Consensus 498 ~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~--~~ 571 (791)
...++|++.+.||+|+||.||+|... +|+.||||++... .....+.+.+|+.+++++. ||||+++++++... ..
T Consensus 6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~ 85 (388)
T 3oz6_A 6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD 85 (388)
T ss_dssp HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence 45678999999999999999999864 7899999998543 2344567788999999997 99999999998654 46
Q ss_pred eeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccc
Q 003855 572 KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKL 651 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~ 651 (791)
.++||||++ |+|.+++... .+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+|+.
T Consensus 86 ~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH----~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 158 (388)
T 3oz6_A 86 VYLVFDYME-TDLHAVIRAN--ILEPVHKQYVVYQLIKVIKYLH----SGGLLHRDMKPSNILLNAECHVKVADFGLSRS 158 (388)
T ss_dssp EEEEEECCS-EEHHHHHHHT--CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEecccC-cCHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH----hCCEEeCCCCHHHeEEcCCCCEEecCCccccc
Confidence 899999997 6999999874 3899999999999999999999 67899999999999999999999999999987
Q ss_pred cCCCC-------------------CcceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCc
Q 003855 652 LGEGE-------------------DSVTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE 711 (791)
Q Consensus 652 ~~~~~-------------------~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~ 711 (791)
+.... .....+..+||++|+|||++.+ ..++.++||||+||++|||++|+.||.+....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~- 237 (388)
T 3oz6_A 159 FVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTM- 237 (388)
T ss_dssp SSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-
T ss_pred ccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHH-
Confidence 64311 1112233579999999998876 67999999999999999999999999763221
Q ss_pred chHHHHHHHhcCCCh-----------hhhcch-----------------hhhhhHHhhHHHHHHHHHHHHHHhhccccCC
Q 003855 712 MSLRRWVKESLPHGL-----------TEVVDA-----------------NLVREEQAFSAKMDCILSIMDLALDCCIESP 763 (791)
Q Consensus 712 ~~~~~~~~~~~~~~~-----------~~~~d~-----------------~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P 763 (791)
..+...+........ ...+.. ..............++.++.+++.+||+.||
T Consensus 238 ~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP 317 (388)
T 3oz6_A 238 NQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNP 317 (388)
T ss_dssp HHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSG
T ss_pred HHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCc
Confidence 111221111100000 000000 0000000000111346778999999999999
Q ss_pred CCCCCHHHHHHH
Q 003855 764 DMRINVTDAAAK 775 (791)
Q Consensus 764 ~~RPt~~ev~~~ 775 (791)
++|||+.|+++.
T Consensus 318 ~~R~t~~e~l~H 329 (388)
T 3oz6_A 318 NKRISANDALKH 329 (388)
T ss_dssp GGSCCHHHHTTS
T ss_pred ccCCCHHHHhCC
Confidence 999999999864
No 148
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=6.3e-41 Score=356.38 Aligned_cols=265 Identities=24% Similarity=0.416 Sum_probs=213.4
Q ss_pred HHHHHhhccccccccCCCcceEEEEEEec------CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeec
Q 003855 495 DIQRATDEFNECNLLGTGSFGSVYKGTIS------DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCS 567 (791)
Q Consensus 495 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~ 567 (791)
+.+...++|++.+.||+|+||.||+|+.. +++.||||++.... ......+.+|+.++++++||||+++++++.
T Consensus 19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~ 98 (322)
T 1p4o_A 19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVS 98 (322)
T ss_dssp TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEEC
T ss_pred hhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEc
Confidence 33445688999999999999999999864 36789999987543 334567889999999999999999999999
Q ss_pred cCCeeeEEEecCCCCCHHHHHhhCC---------CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCC
Q 003855 568 NPDFKALVLEFMPNGSLEKWLYSHN---------YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDEN 638 (791)
Q Consensus 568 ~~~~~~lv~e~~~~g~L~~~l~~~~---------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~ 638 (791)
+.+..++||||+++|+|.+++.... ..+++..+..++.|++.||.||| +.+|+||||||+||+++.+
T Consensus 99 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dikp~NIli~~~ 174 (322)
T 1p4o_A 99 QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN----ANKFVHRDLAARNCMVAED 174 (322)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH----HTTCBCSCCSGGGEEECTT
T ss_pred cCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH----HCCCccCCCccceEEEcCC
Confidence 9999999999999999999997421 34689999999999999999999 6789999999999999999
Q ss_pred CcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHH
Q 003855 639 MAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRW 717 (791)
Q Consensus 639 ~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~ 717 (791)
+.+||+|||+++...............+|+.|+|||++.+..++.++||||||+++|||++ |+.||..... ....+.
T Consensus 175 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~~~~~~ 252 (322)
T 1p4o_A 175 FTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN--EQVLRF 252 (322)
T ss_dssp CCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH--HHHHHH
T ss_pred CeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH--HHHHHH
Confidence 9999999999986644332222333457889999999988889999999999999999999 8889875321 111111
Q ss_pred HHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 718 VKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 718 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
+... .. ...+..++..+.+++.+||+.||++|||+.|+++.|+++...
T Consensus 253 ~~~~---~~--------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~ 300 (322)
T 1p4o_A 253 VMEG---GL--------------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEP 300 (322)
T ss_dssp HHTT---CC--------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCT
T ss_pred HHcC---Cc--------------CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhcc
Confidence 1110 00 001123456788999999999999999999999999876443
No 149
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=2.5e-40 Score=345.76 Aligned_cols=260 Identities=25% Similarity=0.379 Sum_probs=215.6
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEe
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 577 (791)
..++|++.+.||+|+||.||+|... ++..||+|++.... ...+.+.+|+.++++++||||+++++++.+....++|||
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e 89 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE 89 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence 4578999999999999999999976 58899999987543 345678899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCC
Q 003855 578 FMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 578 ~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~ 656 (791)
|+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 90 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH----~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~ 165 (288)
T 3kfa_A 90 FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE----KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT 165 (288)
T ss_dssp CCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHH----HHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS
T ss_pred cCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHH----HCCccCCCCCcceEEEcCCCCEEEccCccceeccCCc
Confidence 99999999999864 345899999999999999999999 6789999999999999999999999999998765433
Q ss_pred CcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 657 DSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
. .......+++.|+|||.+.+..++.++||||+|+++|||++ |..||...... .....+......
T Consensus 166 ~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~--~~~~~~~~~~~~----------- 231 (288)
T 3kfa_A 166 Y-TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLEKDYRM----------- 231 (288)
T ss_dssp S-EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHHHTTCCC-----------
T ss_pred c-ccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHhccCCC-----------
Confidence 2 23333457889999999988899999999999999999999 99998763222 222222211110
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHh
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKF 783 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~ 783 (791)
..+..++..+.+++.+|++.||++||++.|+++.|+++....
T Consensus 232 ------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~~ 273 (288)
T 3kfa_A 232 ------ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQES 273 (288)
T ss_dssp ------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ------CCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHhc
Confidence 111234567889999999999999999999999999886654
No 150
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=3e-40 Score=355.75 Aligned_cols=253 Identities=23% Similarity=0.285 Sum_probs=194.5
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEec
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEF 578 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 578 (791)
.++|++.+.||+|+||.||+|+.. +++.||||++..... ..+.+.+|+.++++++||||+++++++.++...++||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 97 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY 97 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence 468999999999999999999976 789999999875432 235678899999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCc--EEEeeeccccccCCCC
Q 003855 579 MPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMA--AHVSDFGISKLLGEGE 656 (791)
Q Consensus 579 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~--~kl~Dfgla~~~~~~~ 656 (791)
+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+|+......
T Consensus 98 ~~~~~L~~~l~~~~-~~~~~~~~~i~~ql~~~L~~LH----~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~ 172 (361)
T 3uc3_A 98 ASGGELYERICNAG-RFSEDEARFFFQQLLSGVSYCH----SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHS 172 (361)
T ss_dssp CCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC-------
T ss_pred CCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCCHHHEEEcCCCCceEEEeecCccccccccC
Confidence 99999999997654 3899999999999999999999 678999999999999987765 9999999997533221
Q ss_pred CcceeecccccccccCCCccCCCCCCcc-ccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 657 DSVTQTMTMATIGYMAPEYGSEGIVSAK-CDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~-~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
.....+||+.|+|||++.+..++.+ +||||+||++|||++|+.||....... .....+........
T Consensus 173 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~~~~~~~~~~~--------- 239 (361)
T 3uc3_A 173 ---QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPR-DYRKTIQRILSVKY--------- 239 (361)
T ss_dssp -----------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CC-CHHHHHHHHHTTCC---------
T ss_pred ---CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHH-HHHHHHHHHhcCCC---------
Confidence 2233569999999999877777655 899999999999999999997643322 22222221111100
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHH
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAK 775 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~ 775 (791)
..+....++..+.+++.+||+.||++|||+.|+++.
T Consensus 240 ----~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 240 ----SIPDDIRISPECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp ----CCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred ----CCCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 001111234667899999999999999999999863
No 151
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=1.8e-39 Score=340.82 Aligned_cols=265 Identities=19% Similarity=0.225 Sum_probs=211.9
Q ss_pred hhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeee-ccCCeeeEEEe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSC-SNPDFKALVLE 577 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~lv~e 577 (791)
.++|++.+.||+|+||.||+|+. .+++.||||++..... .+.+.+|+.+++.++|++++..++++ ......++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence 46899999999999999999996 5899999999865432 24578899999999998877766665 56777899999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeC---CCCcEEEeeeccccccCC
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLD---ENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~---~~~~~kl~Dfgla~~~~~ 654 (791)
|+ +++|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++ .++.+||+|||+++....
T Consensus 86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~ 160 (296)
T 3uzp_A 86 LL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH----SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD 160 (296)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred ec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH----hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccc
Confidence 99 99999999866667999999999999999999999 67899999999999994 889999999999987654
Q ss_pred CCCcc-----eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCc--chHHHHHHHhcCCChh
Q 003855 655 GEDSV-----TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE--MSLRRWVKESLPHGLT 727 (791)
Q Consensus 655 ~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~--~~~~~~~~~~~~~~~~ 727 (791)
..... ......||+.|+|||.+.+..++.++|||||||++|||++|+.||....... ..+.......
T Consensus 161 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~------ 234 (296)
T 3uzp_A 161 ARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKK------ 234 (296)
T ss_dssp TTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHH------
T ss_pred cccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccc------
Confidence 43211 1234568999999999999999999999999999999999999998643221 1111111110
Q ss_pred hhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcc
Q 003855 728 EVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLD 785 (791)
Q Consensus 728 ~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~ 785 (791)
.... .......++..+.+++.+||+.||++||++.++++.|+++......
T Consensus 235 ------~~~~--~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~ 284 (296)
T 3uzp_A 235 ------MSTP--IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGF 284 (296)
T ss_dssp ------HHSC--HHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred ------cCCc--hHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcCC
Confidence 0000 0001124567789999999999999999999999999999776543
No 152
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=1.7e-39 Score=337.42 Aligned_cols=251 Identities=22% Similarity=0.274 Sum_probs=206.2
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEe
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 577 (791)
..++|++.+.||+|+||.||+|+.. ++..||+|++........+.+.+|++++++++||||+++++++.+....++|||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 86 (277)
T 3f3z_A 7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVME 86 (277)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEe
Confidence 3578999999999999999999975 578999999987665566789999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEe---CCCCcEEEeeeccccccCC
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILL---DENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill---~~~~~~kl~Dfgla~~~~~ 654 (791)
|+++++|.+++..... +++..+..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||++.....
T Consensus 87 ~~~~~~L~~~~~~~~~-~~~~~~~~i~~~i~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~ 161 (277)
T 3f3z_A 87 LCTGGELFERVVHKRV-FRESDAARIMKDVLSAVAYCH----KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKP 161 (277)
T ss_dssp CCCSCBHHHHHHHHCS-CCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCT
T ss_pred ccCCCcHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH----HCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccC
Confidence 9999999999986543 899999999999999999999 6789999999999999 7889999999999987654
Q ss_pred CCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhh
Q 003855 655 GEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANL 734 (791)
Q Consensus 655 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 734 (791)
... .....||+.|+|||.+.+. ++.++||||+|+++|||++|+.||...... .....+........
T Consensus 162 ~~~---~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~~-------- 227 (277)
T 3f3z_A 162 GKM---MRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDS--EVMLKIREGTFTFP-------- 227 (277)
T ss_dssp TSC---BCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCCCCC--------
T ss_pred ccc---hhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHH--HHHHHHHhCCCCCC--------
Confidence 332 2334689999999987654 899999999999999999999999763221 11111111000000
Q ss_pred hhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 735 VREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
......++..+.+++.+|++.||++||++.|+++
T Consensus 228 ------~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 228 ------EKDWLNVSPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp ------HHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred ------chhhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0011134567889999999999999999999986
No 153
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=1.4e-39 Score=341.65 Aligned_cols=265 Identities=19% Similarity=0.231 Sum_probs=208.4
Q ss_pred HhhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeee-ccCCeeeEEE
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSC-SNPDFKALVL 576 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~lv~ 576 (791)
..++|++.+.||+|+||.||+|+. .+++.||||++..... .+.+..|+.+++.++|++++..++++ ...+..++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence 457899999999999999999996 5789999998754432 23577899999999988877777665 6677889999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEe---CCCCcEEEeeeccccccC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILL---DENMAAHVSDFGISKLLG 653 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill---~~~~~~kl~Dfgla~~~~ 653 (791)
||+ +|+|.+++......+++..+..++.|++.||.||| +.+|+||||||+||++ +.++.+||+|||+++...
T Consensus 85 e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH----~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~ 159 (296)
T 4hgt_A 85 ELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH----SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR 159 (296)
T ss_dssp ECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred Ecc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH----HCCeecCCCCHHHeeeeccCCCCeEEEecCccceecc
Confidence 999 99999999876666999999999999999999999 6789999999999999 789999999999998765
Q ss_pred CCCCc-----ceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCc--chHHHHHHHhcCCCh
Q 003855 654 EGEDS-----VTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE--MSLRRWVKESLPHGL 726 (791)
Q Consensus 654 ~~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~--~~~~~~~~~~~~~~~ 726 (791)
..... .......||+.|+|||.+.+..++.++|||||||++|||++|+.||....... .........
T Consensus 160 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~------ 233 (296)
T 4hgt_A 160 DARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEK------ 233 (296)
T ss_dssp CTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHH------
T ss_pred CcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcc------
Confidence 44321 12234568999999999999999999999999999999999999997643321 111111111
Q ss_pred hhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhc
Q 003855 727 TEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFL 784 (791)
Q Consensus 727 ~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~ 784 (791)
..... .......++..+.+++.+||+.||++|||+.++++.|+++.....
T Consensus 234 ------~~~~~--~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~ 283 (296)
T 4hgt_A 234 ------KMSTP--IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG 283 (296)
T ss_dssp ------HHHSC--HHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred ------cccch--hhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 00000 000112346788999999999999999999999999999977654
No 154
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=7.6e-40 Score=346.74 Aligned_cols=267 Identities=24% Similarity=0.343 Sum_probs=190.7
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 577 (791)
.++|++.+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 468999999999999999999865 68999999987543 2234577889999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhC-----CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccccc
Q 003855 578 FMPNGSLEKWLYSH-----NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLL 652 (791)
Q Consensus 578 ~~~~g~L~~~l~~~-----~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~ 652 (791)
|++ |+|.+++... ...+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH----~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 158 (317)
T 2pmi_A 84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH----ENKILHRDLKPQNLLINKRGQLKLGDFGLARAF 158 (317)
T ss_dssp CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTCCEEECCCSSCEET
T ss_pred ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH----HCCeeeCCCChHHeEEcCCCCEEECcCccceec
Confidence 997 5999998743 234899999999999999999999 678999999999999999999999999999876
Q ss_pred CCCCCcceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcC--CC-hhh
Q 003855 653 GEGEDSVTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLP--HG-LTE 728 (791)
Q Consensus 653 ~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~--~~-~~~ 728 (791)
..... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.... ..+......... .. ...
T Consensus 159 ~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~~ 235 (317)
T 2pmi_A 159 GIPVN--TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDE-EQLKLIFDIMGTPNESLWPS 235 (317)
T ss_dssp TSCCC--CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCSCCTTTCGG
T ss_pred CCCcc--cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHhCCCChhHhhh
Confidence 43322 2233468999999998866 46899999999999999999999999763321 112222111110 00 000
Q ss_pred hc-----chhhh-------hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 729 VV-----DANLV-------REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 729 ~~-----d~~~~-------~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.. .+.+. ...........++.++.+++.+||+.||++|||+.|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 236 VTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp GGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence 00 00000 000000011134567889999999999999999999975
No 155
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=6.6e-40 Score=340.87 Aligned_cols=248 Identities=24% Similarity=0.333 Sum_probs=202.1
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeE
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 574 (791)
+.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.++++++||||+++++++.+....++
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 86 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL 86 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence 3578999999999999999999875 67899999986543 2235678899999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCC
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~ 654 (791)
||||+++|+|.+++..... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++.....
T Consensus 87 v~e~~~~~~l~~~l~~~~~-~~~~~~~~~~~qi~~~l~~LH----~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~ 161 (279)
T 3fdn_A 87 ILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYCH----SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS 161 (279)
T ss_dssp EECCCTTEEHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHH----TTTCEECCCCGGGEEECTTSCEEECSCCEESCC--
T ss_pred EEecCCCCcHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHH----hCCEecccCChHhEEEcCCCCEEEEeccccccCCc
Confidence 9999999999999986543 899999999999999999999 77999999999999999999999999999865433
Q ss_pred CCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhh
Q 003855 655 GEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANL 734 (791)
Q Consensus 655 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 734 (791)
. ......|++.|+|||.+.+..++.++||||+|+++|||++|+.||...... .....+....
T Consensus 162 ~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~------------ 223 (279)
T 3fdn_A 162 S----RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQ--ETYKRISRVE------------ 223 (279)
T ss_dssp ----------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHHTC------------
T ss_pred c----cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHH--HHHHHHHhCC------------
Confidence 2 223346899999999999999999999999999999999999999753211 1111111100
Q ss_pred hhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHH
Q 003855 735 VREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAK 775 (791)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~ 775 (791)
...+..++..+.+++.+||+.||++||++.|+++.
T Consensus 224 ------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 224 ------FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp ------CCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred ------CCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 00111244667899999999999999999999874
No 156
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.4e-39 Score=358.59 Aligned_cols=334 Identities=28% Similarity=0.320 Sum_probs=253.0
Q ss_pred ccCCccccCCCCCCeeecCCCcccccCCccccCCCCC-------------cEEeCCCCcCcccCCchhhhcCCCccEEEc
Q 003855 3 GQIPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTM-------------RILTLEGNQLSGRLPSTVGHLLPNIESLLL 69 (791)
Q Consensus 3 g~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L 69 (791)
|+||++|+++++|++|++++|++++.+|..++++.+| ++|++++|+++ .+|.. .++|++|+|
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~~----~~~L~~L~l 98 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPEL----PPHLESLVA 98 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCSC----CTTCSEEEC
T ss_pred hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCCC----cCCCCEEEc
Confidence 7899999999999999999999999999999998875 99999999998 77762 479999999
Q ss_pred cCCcceecCCccCcCCCCCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEc
Q 003855 70 AANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSF 149 (791)
Q Consensus 70 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L 149 (791)
++|.+++ +|.. .++|++|++++|+++++... .++|+.|++++|+++.++ +|.++++|++|++
T Consensus 99 ~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp----------~~~~l~~L~~L~l 160 (454)
T 1jl5_A 99 SCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP----------ELQNSSFLKIIDV 160 (454)
T ss_dssp CSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC----------CCTTCTTCCEEEC
T ss_pred cCCcCCc-cccc---cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc----------ccCCCCCCCEEEC
Confidence 9999996 5644 37899999999999864321 268999999999998654 3889999999999
Q ss_pred cCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcc
Q 003855 150 GSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEG 229 (791)
Q Consensus 150 ~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 229 (791)
++|++++ +|..+ .+|++|++++|++++ +| .+.++++|+.|++++|++++ +|.. .++|++|++++|.++
T Consensus 161 ~~N~l~~-lp~~~----~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 161 DNNSLKK-LPDLP----PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE- 228 (454)
T ss_dssp CSSCCSC-CCCCC----TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-
T ss_pred CCCcCcc-cCCCc----ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-
Confidence 9999996 45433 479999999999997 55 69999999999999999986 3433 258999999999998
Q ss_pred cCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCccccc
Q 003855 230 SIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQK 309 (791)
Q Consensus 230 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~ 309 (791)
.+| .+..+++|+.|++++|++++ +|.. +++|+.|++++|++++ +|.. +++|+.|++++|.+++. |..
T Consensus 229 ~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~--- 295 (454)
T 1jl5_A 229 ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL--- 295 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---
T ss_pred ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---
Confidence 667 48899999999999999985 4442 4789999999999986 4443 37888999999988762 211
Q ss_pred CCCCCEEecCCcccCCCCCcchhcc-ccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceE
Q 003855 310 LKVLTVLDLSRNQLSGDIPSTIGAL-KDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQF 388 (791)
Q Consensus 310 l~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l 388 (791)
.++|+.|++++|++++ ++ .+ ++|+.|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|+.|
T Consensus 296 ~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L 362 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQL 362 (454)
T ss_dssp CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEE
T ss_pred CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEE
Confidence 1567777777777763 22 22 467777777777774 4443 466777777777776 3444 35677777
Q ss_pred EccCCCCcc
Q 003855 389 NVSHNRLEG 397 (791)
Q Consensus 389 ~l~~N~l~~ 397 (791)
++++|++++
T Consensus 363 ~L~~N~l~~ 371 (454)
T 1jl5_A 363 HVEYNPLRE 371 (454)
T ss_dssp ECCSSCCSS
T ss_pred ECCCCCCCc
Confidence 777777776
No 157
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=2.4e-39 Score=337.58 Aligned_cols=251 Identities=23% Similarity=0.339 Sum_probs=205.5
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.++++++||||+++++++.++...++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 478999999999999999999975 68999999987553 344577889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCc---EEEeeeccccccC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMA---AHVSDFGISKLLG 653 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~---~kl~Dfgla~~~~ 653 (791)
||+++|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++. +||+|||++....
T Consensus 85 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~ 159 (284)
T 3kk8_A 85 DLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCH----SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN 159 (284)
T ss_dssp CCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred ecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcc
Confidence 9999999999988654 3899999999999999999999 678999999999999986655 9999999998765
Q ss_pred CCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchh
Q 003855 654 EGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDAN 733 (791)
Q Consensus 654 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 733 (791)
.... .....||+.|+|||.+.+..++.++||||+|+++|||++|+.||..... ......+........
T Consensus 160 ~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~--~~~~~~~~~~~~~~~------- 227 (284)
T 3kk8_A 160 DSEA---WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ--HRLYAQIKAGAYDYP------- 227 (284)
T ss_dssp SSCB---CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTCCCCC-------
T ss_pred cCcc---ccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCch--hHHHHHHHhccccCC-------
Confidence 4322 2335689999999999999999999999999999999999999965321 111111111110000
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 734 LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.+....++..+.+++.+|++.||++|||+.|+++
T Consensus 228 -------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 228 -------SPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp -------TTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -------chhhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 0011134566889999999999999999999987
No 158
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.4e-40 Score=380.16 Aligned_cols=260 Identities=22% Similarity=0.400 Sum_probs=207.3
Q ss_pred cccccc-ccCCCcceEEEEEEec---CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 502 EFNECN-LLGTGSFGSVYKGTIS---DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 502 ~~~~~~-~ig~G~~g~Vy~~~~~---~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
++.+.+ .||+|+||.||+|.+. ++..||||+++... ....+.+.+|++++++++||||+++++++.+ +..++||
T Consensus 336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~ 414 (613)
T 2ozo_A 336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVM 414 (613)
T ss_dssp SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEE
T ss_pred ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEE
Confidence 444444 7999999999999864 56679999997643 3356789999999999999999999999976 5689999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~ 656 (791)
||+++|+|.+++......+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+.+....
T Consensus 415 E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH----~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~ 490 (613)
T 2ozo_A 415 EMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE----EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADD 490 (613)
T ss_dssp ECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC---
T ss_pred EeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH----HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCC
Confidence 999999999999877677999999999999999999999 6789999999999999999999999999998765433
Q ss_pred Ccc-eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchhh
Q 003855 657 DSV-TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANL 734 (791)
Q Consensus 657 ~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 734 (791)
... ......+++.|+|||++.++.++.++|||||||++|||++ |+.||...... .....+....
T Consensus 491 ~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i~~~~------------ 556 (613)
T 2ozo_A 491 SYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQGK------------ 556 (613)
T ss_dssp -----------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSH--HHHHHHHTTC------------
T ss_pred ceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHcCC------------
Confidence 221 1222345689999999988899999999999999999998 99999764322 1222221110
Q ss_pred hhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcc
Q 003855 735 VREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLD 785 (791)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~ 785 (791)
....+..++.++.++|.+||+.||++||++.++++.|+.+......
T Consensus 557 -----~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~ 602 (613)
T 2ozo_A 557 -----RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS 602 (613)
T ss_dssp -----CCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSC
T ss_pred -----CCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhcc
Confidence 0111224667889999999999999999999999999998666543
No 159
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.3e-41 Score=358.26 Aligned_cols=269 Identities=22% Similarity=0.376 Sum_probs=191.0
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHh--ccCCccceeeeeeccCC----eee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRN--VRHRNLIKILSSCSNPD----FKA 573 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~~~----~~~ 573 (791)
.++|++.+.||+|+||.||+|+. +++.||||++.... ...+..|.+++.. ++||||+++++++.+.. ..+
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 77 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-C-TTSCEEEEECC-TT---HHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEE
T ss_pred cceeeehhhccCCCCeEEEEEEE-cCcceEEEEecccc---hhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeE
Confidence 46899999999999999999987 48999999987543 3456678888877 79999999999997766 789
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccC----CCCCeEecCCCCCCeEeCCCCcEEEeeeccc
Q 003855 574 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGH----SSAPIIHCDLKPTNILLDENMAAHVSDFGIS 649 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~----~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla 649 (791)
+||||+++|+|.+++.... +++..+..++.|++.||+|||... .+.+|+||||||+||+++.++.+||+|||+|
T Consensus 78 lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil~~~~~~~kl~DFg~a 155 (303)
T 3gxj_A 78 LVSDYHEHGSLFDYLNRYT--VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp EEEECCTTCCHHHHHHHCC--BCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC-CCCSCCCGGGC-CCTTCCC-BCCCCC-
T ss_pred EEEeccCCCCHHHHHhccC--cchHHHHHHHHHHHHHHHHHHHHHhhhccCCCEeeCcCCHHHeEECCCCCEEEeecCcc
Confidence 9999999999999997654 778889999999999999999311 1458999999999999999999999999999
Q ss_pred cccCCCCCcc--eeecccccccccCCCccCCC------CCCccccHHhHHHHHHHHHhC----------CCCCCccccCc
Q 003855 650 KLLGEGEDSV--TQTMTMATIGYMAPEYGSEG------IVSAKCDVYSYGVLLMETFTR----------KRPTDEMFTGE 711 (791)
Q Consensus 650 ~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~------~~~~~~Dv~s~G~vl~elltg----------~~p~~~~~~~~ 711 (791)
+......... ......||+.|+|||++.+. .++.++|||||||++|||+|| +.||.......
T Consensus 156 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~~~~~~ 235 (303)
T 3gxj_A 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSD 235 (303)
T ss_dssp CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTTCC-C
T ss_pred eeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccccccCCCC
Confidence 7765433221 12334699999999988766 455789999999999999999 55654432221
Q ss_pred chHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 712 MSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
................ +.. ........++..+.+++.+||+.||++|||+.|+++.|+++.++
T Consensus 236 ~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~~ 298 (303)
T 3gxj_A 236 PSVEEMRKVVCEQKLR----PNI----PNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp CCCC-CHHHHTTSCCC----CCC----CGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CCC
T ss_pred ccHHHHHHHHHHhhcC----CCc----cccccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhhh
Confidence 1111111111111110 001 11112235677899999999999999999999999999987543
No 160
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=1.8e-40 Score=355.93 Aligned_cols=266 Identities=15% Similarity=0.171 Sum_probs=201.7
Q ss_pred hhccccccccCCCcceEEEEEEec----CCcEEEEEEeehhhhH-----------HHHHHHHHHHHHHhccCCccceeee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS----DGTDVAIKIFNLQLER-----------AFRSFDSECEVLRNVRHRNLIKILS 564 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~e~~~l~~l~h~niv~l~~ 564 (791)
.++|++.+.||+|+||.||+|+.. ++..||||+....... ..+.+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 368999999999999999999975 5788999998654211 1234667888999999999999999
Q ss_pred eecc----CCeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCC-
Q 003855 565 SCSN----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENM- 639 (791)
Q Consensus 565 ~~~~----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~- 639 (791)
++.. ....++||||+ +++|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dlkp~NIll~~~~~ 189 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYIH----ENEYVHGDIKAANLLLGYKNP 189 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEESSST
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----hCCeeCCCcCHHHEEEccCCC
Confidence 9877 77889999999 999999998655 5899999999999999999999 67899999999999999887
Q ss_pred -cEEEeeeccccccCCCCCc-----ceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcch
Q 003855 640 -AAHVSDFGISKLLGEGEDS-----VTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMS 713 (791)
Q Consensus 640 -~~kl~Dfgla~~~~~~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~ 713 (791)
.+||+|||+|+.+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.........
T Consensus 190 ~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~ 269 (345)
T 2v62_A 190 DQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVA 269 (345)
T ss_dssp TSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHH
T ss_pred CcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHH
Confidence 9999999999876432211 1113446899999999999889999999999999999999999999653322222
Q ss_pred HHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHH
Q 003855 714 LRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIK 780 (791)
Q Consensus 714 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~ 780 (791)
.......... . +...+. .......++.++.+++.+||+.||++||++.++++.|+++.
T Consensus 270 ~~~~~~~~~~-~----~~~~~~----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~ 327 (345)
T 2v62_A 270 VQTAKTNLLD-E----LPQSVL----KWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHG 327 (345)
T ss_dssp HHHHHHHHHH-T----TTHHHH----HHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTC
T ss_pred HHHHHHhhcc-c----ccHHHH----hhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccC
Confidence 2111111000 0 000000 00001145678899999999999999999999999998764
No 161
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=4.2e-40 Score=352.18 Aligned_cols=249 Identities=22% Similarity=0.241 Sum_probs=203.0
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCeee
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDFKA 573 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~ 573 (791)
..++|++.+.||+|+||.||+|+.+ +++.||||++.... ....+.+..|..++..+ +||+|+++++++.+.+..+
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 3578999999999999999999976 57899999997653 23456788899999988 8999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccC
Q 003855 574 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLG 653 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~ 653 (791)
+||||+++|+|.+++...+. +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+|+...
T Consensus 98 lv~E~~~gg~L~~~l~~~~~-~~~~~~~~~~~qi~~aL~~LH----~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 172 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQVGR-FKEPHAVFYAAEIAIGLFFLQ----SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI 172 (353)
T ss_dssp EEEECCCSCBHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEEeCCCCCcHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHH----HCCEEeccCCHHHEEEcCCCcEEEEeCCcccccc
Confidence 99999999999999986543 899999999999999999999 6789999999999999999999999999998643
Q ss_pred CCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchh
Q 003855 654 EGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDAN 733 (791)
Q Consensus 654 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 733 (791)
... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||..... ....+.+.....
T Consensus 173 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~--~~~~~~i~~~~~---------- 238 (353)
T 2i0e_A 173 WDG--VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--DELFQSIMEHNV---------- 238 (353)
T ss_dssp CTT--CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCCC----------
T ss_pred cCC--cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH--HHHHHHHHhCCC----------
Confidence 222 123345799999999999999999999999999999999999999975321 111111111000
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCC-----HHHHHH
Q 003855 734 LVREEQAFSAKMDCILSIMDLALDCCIESPDMRIN-----VTDAAA 774 (791)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt-----~~ev~~ 774 (791)
..+..++.++.+++.+||+.||++||+ +.|+++
T Consensus 239 --------~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~ 276 (353)
T 2i0e_A 239 --------AYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 276 (353)
T ss_dssp --------CCCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred --------CCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence 001134566789999999999999995 466654
No 162
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=1.1e-39 Score=339.34 Aligned_cols=262 Identities=23% Similarity=0.396 Sum_probs=210.9
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEecC
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEFM 579 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 579 (791)
.++|++.+.||+|+||.||+|+..+++.||||++..... ..+.+.+|++++++++||||+++++++.+ +..++||||+
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~ 89 (279)
T 1qpc_A 12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYM 89 (279)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEECC
T ss_pred HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-cHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEEEEecC
Confidence 468999999999999999999998888999999875432 34678899999999999999999999864 4588999999
Q ss_pred CCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCc
Q 003855 580 PNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDS 658 (791)
Q Consensus 580 ~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~ 658 (791)
++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||++++++.+||+|||+++.......
T Consensus 90 ~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~- 164 (279)
T 1qpc_A 90 ENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE----ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY- 164 (279)
T ss_dssp TTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE-
T ss_pred CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH----HCCeeccCCCHhhEEEcCCCCEEECCCcccccccCccc-
Confidence 9999999997542 24899999999999999999999 67899999999999999999999999999987654321
Q ss_pred ceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhh
Q 003855 659 VTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVRE 737 (791)
Q Consensus 659 ~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 737 (791)
.......++..|+|||.+.++.++.++||||||+++|||++ |+.||...... .....+......
T Consensus 165 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~~~~~~~~~------------- 229 (279)
T 1qpc_A 165 TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP--EVIQNLERGYRM------------- 229 (279)
T ss_dssp ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTTCCC-------------
T ss_pred ccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHH--HHHHHHhcccCC-------------
Confidence 12223356788999999988889999999999999999999 89998753221 111111111000
Q ss_pred HHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcccc
Q 003855 738 EQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLDDA 787 (791)
Q Consensus 738 ~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~~~ 787 (791)
..+..++..+.+++.+|++.||++|||+.++++.|+++........
T Consensus 230 ----~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~ 275 (279)
T 1qpc_A 230 ----VRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEGQY 275 (279)
T ss_dssp ----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC----
T ss_pred ----CCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhccCCC
Confidence 0112345678899999999999999999999999999987665444
No 163
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=6e-40 Score=354.93 Aligned_cols=257 Identities=17% Similarity=0.135 Sum_probs=209.0
Q ss_pred HHhhccccccccCCCcceEEEEEE------ecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhcc---CCccceeeeeecc
Q 003855 498 RATDEFNECNLLGTGSFGSVYKGT------ISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVR---HRNLIKILSSCSN 568 (791)
Q Consensus 498 ~~~~~~~~~~~ig~G~~g~Vy~~~------~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~ 568 (791)
...++|.+.+.||+|+||.||+|. ..+++.||||++..... ..+..|+.++++++ |+||+++++++..
T Consensus 62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~ 138 (365)
T 3e7e_A 62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANP---WEFYIGTQLMERLKPSMQHMFMKFYSAHLF 138 (365)
T ss_dssp CSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCH---HHHHHHHHHHHHSCGGGGGGBCCEEEEEEC
T ss_pred ECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCCh---hHHHHHHHHHHHhhhhhhhhhhhhheeeec
Confidence 345789999999999999999994 34788999999875533 45667778887776 9999999999999
Q ss_pred CCeeeEEEecCCCCCHHHHHhh----CCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCC-------
Q 003855 569 PDFKALVLEFMPNGSLEKWLYS----HNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDE------- 637 (791)
Q Consensus 569 ~~~~~lv~e~~~~g~L~~~l~~----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~------- 637 (791)
.+..++||||+++|+|.+++.. ....+++..+..++.||+.||+||| +.+|+||||||+|||++.
T Consensus 139 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH----~~~ivHrDiKp~NIll~~~~~~~~~ 214 (365)
T 3e7e_A 139 QNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH----DCEIIHGDIKPDNFILGNGFLEQDD 214 (365)
T ss_dssp SSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH----TTTEECCCCSGGGEEECGGGTCC--
T ss_pred CCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh----hCCeecCCCCHHHEEecccccCccc
Confidence 9999999999999999999974 3456999999999999999999999 778999999999999998
Q ss_pred ----CCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcch
Q 003855 638 ----NMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMS 713 (791)
Q Consensus 638 ----~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~ 713 (791)
++.+||+|||+|+.+............+||++|+|||++.+..++.++|||||||++|||+||+.||.....+...
T Consensus 215 ~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~ 294 (365)
T 3e7e_A 215 EDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECK 294 (365)
T ss_dssp ----CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEEE
T ss_pred cccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCcee
Confidence 8999999999998665433344455567999999999999999999999999999999999999998654332110
Q ss_pred HHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCC-CCHHHHHHHHHHHHHHhcc
Q 003855 714 LRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMR-INVTDAAAKLKKIKVKFLD 785 (791)
Q Consensus 714 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~R-Pt~~ev~~~L~~~~~~~~~ 785 (791)
+...+... .....+.+++..|++.+|.+| |++.++.+.|+++..+...
T Consensus 295 ----------------~~~~~~~~--------~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~~~~ 343 (365)
T 3e7e_A 295 ----------------PEGLFRRL--------PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQHYT 343 (365)
T ss_dssp ----------------ECSCCTTC--------SSHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred ----------------echhcccc--------CcHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHhhh
Confidence 00000000 012446689999999999998 6888999999888766543
No 164
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=1e-39 Score=349.49 Aligned_cols=246 Identities=27% Similarity=0.340 Sum_probs=201.5
Q ss_pred hccccccccCCCcceEEEEEEe-cCCcEEEEEEeehh---hhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 501 DEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQ---LERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
+.|+..+.||+|+||.||+|+. .+++.||||++... .....+.+.+|++++++++||||+++++++.+++..++||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 5689999999999999999996 57899999998643 2344567899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~ 656 (791)
||+. |++.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 134 e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~- 207 (348)
T 1u5q_A 134 EYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH----SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA- 207 (348)
T ss_dssp ECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB-
T ss_pred ecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH----hCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC-
Confidence 9996 6899988766666999999999999999999999 678999999999999999999999999999875432
Q ss_pred CcceeecccccccccCCCcc---CCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchh
Q 003855 657 DSVTQTMTMATIGYMAPEYG---SEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDAN 733 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~---~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 733 (791)
....||+.|+|||++ ..+.++.++|||||||++|||++|+.||....... ..........+.
T Consensus 208 -----~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~-~~~~~~~~~~~~--------- 272 (348)
T 1u5q_A 208 -----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYHIAQNESPA--------- 272 (348)
T ss_dssp -----CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHSCCCC---------
T ss_pred -----CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHhcCCCC---------
Confidence 234689999999987 35779999999999999999999999986532111 111111110000
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHH
Q 003855 734 LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAK 775 (791)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~ 775 (791)
. ....++..+.+++.+||+.||++|||+.|+++.
T Consensus 273 ~--------~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h 306 (348)
T 1u5q_A 273 L--------QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH 306 (348)
T ss_dssp C--------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred C--------CCCCCCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 0 011234667899999999999999999999753
No 165
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=1.4e-39 Score=340.53 Aligned_cols=264 Identities=24% Similarity=0.372 Sum_probs=211.2
Q ss_pred hhcccccc-ccCCCcceEEEEEEec---CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeee
Q 003855 500 TDEFNECN-LLGTGSFGSVYKGTIS---DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKA 573 (791)
Q Consensus 500 ~~~~~~~~-~ig~G~~g~Vy~~~~~---~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 573 (791)
.++|++.+ .||+|+||.||+|.+. +++.||||++.... ....+.+.+|+.++++++||||+++++++ ..+..+
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~ 93 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM 93 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence 36788887 9999999999999642 46889999987543 23457789999999999999999999999 556789
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccC
Q 003855 574 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLG 653 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~ 653 (791)
+||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 94 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH----~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~ 168 (291)
T 1xbb_A 94 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLE----ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALR 168 (291)
T ss_dssp EEEECCTTEEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEEeCCCCCHHHHHHhCc-CCCHHHHHHHHHHHHHHHHHHH----hCCeEcCCCCcceEEEeCCCcEEEccCCcceeec
Confidence 9999999999999998754 3899999999999999999999 6789999999999999999999999999998775
Q ss_pred CCCCcc-eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcc
Q 003855 654 EGEDSV-TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVD 731 (791)
Q Consensus 654 ~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d 731 (791)
...... ......+++.|+|||.+.+..++.++||||||+++|||++ |+.||..... ......+......
T Consensus 169 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~~~~~~~~~~~~~------- 239 (291)
T 1xbb_A 169 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG--SEVTAMLEKGERM------- 239 (291)
T ss_dssp TTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCH--HHHHHHHHTTCCC-------
T ss_pred cCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCH--HHHHHHHHcCCCC-------
Confidence 543322 1222346788999999988889999999999999999999 9999976322 1122222111100
Q ss_pred hhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhccccc
Q 003855 732 ANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLDDAS 788 (791)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~~~~ 788 (791)
..+..++..+.+++.+||+.||++||++.|+++.|+++-.+...+..
T Consensus 240 ----------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~~~~ 286 (291)
T 1xbb_A 240 ----------GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVVNEGH 286 (291)
T ss_dssp ----------CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhhccc
Confidence 01123556788999999999999999999999999999877665543
No 166
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=6.8e-40 Score=352.01 Aligned_cols=260 Identities=23% Similarity=0.299 Sum_probs=203.4
Q ss_pred HHHHHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh-----hHHHHHHHHHHHHHHhccCCccceeeeeecc
Q 003855 495 DIQRATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL-----ERAFRSFDSECEVLRNVRHRNLIKILSSCSN 568 (791)
Q Consensus 495 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~ 568 (791)
++....++|++.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.++++++||||+++++++.+
T Consensus 20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~ 99 (345)
T 3hko_A 20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED 99 (345)
T ss_dssp CHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred hhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc
Confidence 45667789999999999999999999974 78899999987542 3445788999999999999999999999999
Q ss_pred CCeeeEEEecCCCCCHHHHHhhC---------------------------------------CCCCCHHHHHHHHHHHHH
Q 003855 569 PDFKALVLEFMPNGSLEKWLYSH---------------------------------------NYFLDILERLNIMIDVGS 609 (791)
Q Consensus 569 ~~~~~lv~e~~~~g~L~~~l~~~---------------------------------------~~~~~~~~~~~i~~~i~~ 609 (791)
.+..++||||+++|+|.+++... ...+++..+..++.|++.
T Consensus 100 ~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~ 179 (345)
T 3hko_A 100 EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFS 179 (345)
T ss_dssp SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 99999999999999999998521 112356778899999999
Q ss_pred HHHHHHccCCCCCeEecCCCCCCeEeCCCC--cEEEeeeccccccCCCCC--cceeecccccccccCCCccCC--CCCCc
Q 003855 610 ALEYLHHGHSSAPIIHCDLKPTNILLDENM--AAHVSDFGISKLLGEGED--SVTQTMTMATIGYMAPEYGSE--GIVSA 683 (791)
Q Consensus 610 ~l~~LH~~~~~~~i~H~dlk~~Nill~~~~--~~kl~Dfgla~~~~~~~~--~~~~~~~~g~~~y~aPE~~~~--~~~~~ 683 (791)
||+||| +.+|+||||||+||+++.++ .+||+|||+++.+..... ........||+.|+|||.+.+ ..++.
T Consensus 180 ~l~~LH----~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~ 255 (345)
T 3hko_A 180 ALHYLH----NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGP 255 (345)
T ss_dssp HHHHHH----HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCT
T ss_pred HHHHHH----HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCc
Confidence 999999 67899999999999998776 899999999987643221 222344579999999998865 67899
Q ss_pred cccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCC
Q 003855 684 KCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESP 763 (791)
Q Consensus 684 ~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P 763 (791)
++|||||||++|||++|+.||......+ ...+......... .+....++..+.+++.+||+.||
T Consensus 256 ~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~~~~~~~~~~---------------~~~~~~~~~~~~~li~~~l~~~p 319 (345)
T 3hko_A 256 KCDAWSAGVLLHLLLMGAVPFPGVNDAD-TISQVLNKKLCFE---------------NPNYNVLSPLARDLLSNLLNRNV 319 (345)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCCCTT---------------SGGGGGSCHHHHHHHHHHSCSCT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCChHH-HHHHHHhcccccC---------------CcccccCCHHHHHHHHHHcCCCh
Confidence 9999999999999999999997632211 1111111110000 01112345678899999999999
Q ss_pred CCCCCHHHHHH
Q 003855 764 DMRINVTDAAA 774 (791)
Q Consensus 764 ~~RPt~~ev~~ 774 (791)
++||++.|+++
T Consensus 320 ~~Rps~~~~l~ 330 (345)
T 3hko_A 320 DERFDAMRALQ 330 (345)
T ss_dssp TTSCCHHHHHH
T ss_pred hHCCCHHHHhc
Confidence 99999999986
No 167
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=5.7e-40 Score=348.99 Aligned_cols=248 Identities=22% Similarity=0.295 Sum_probs=193.5
Q ss_pred hhccccccccCCCcceEEEEEEe----cCCcEEEEEEeehhh----hHHHHHHHHHHHHHHhccCCccceeeeeeccCCe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI----SDGTDVAIKIFNLQL----ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDF 571 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~----~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 571 (791)
.++|++.+.||+|+||.||+|+. .+++.||+|++.... ......+.+|+.++++++||||+++++++.+.+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 46899999999999999999986 478999999987542 2334567889999999999999999999999999
Q ss_pred eeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccc
Q 003855 572 KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKL 651 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~ 651 (791)
.++||||+++|+|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH----~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~ 170 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLEREG-IFMEDTACFYLAEISMALGHLH----QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKE 170 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCTTTEEECTTSCEEECCCSCC--
T ss_pred EEEEEeCCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHH----hCCEEcccCCHHHeEECCCCcEEEEeCCcccc
Confidence 999999999999999998654 3889999999999999999999 67899999999999999999999999999976
Q ss_pred cCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcc
Q 003855 652 LGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVD 731 (791)
Q Consensus 652 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d 731 (791)
...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...... ...........
T Consensus 171 ~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~i~~~~~--------- 238 (327)
T 3a62_A 171 SIHDGT--VTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRK-KTIDKILKCKL--------- 238 (327)
T ss_dssp ----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHTCC---------
T ss_pred cccCCc--cccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHH-HHHHHHHhCCC---------
Confidence 432221 223356899999999998889999999999999999999999999753211 11111111000
Q ss_pred hhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCC-----CHHHHHH
Q 003855 732 ANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRI-----NVTDAAA 774 (791)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RP-----t~~ev~~ 774 (791)
..+..++..+.+++.+||+.||++|| ++.|+++
T Consensus 239 ----------~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 239 ----------NLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp ----------CCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred ----------CCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 00112346678999999999999999 6777765
No 168
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=2.6e-39 Score=343.49 Aligned_cols=252 Identities=22% Similarity=0.290 Sum_probs=206.3
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhh------HHHHHHHHHHHHHHhccCCccceeeeeeccCCe
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLE------RAFRSFDSECEVLRNVRHRNLIKILSSCSNPDF 571 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 571 (791)
..++|++.+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|+.++++++||||+++++++.+...
T Consensus 10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 89 (321)
T 2a2a_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTD 89 (321)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred hhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE
Confidence 3578999999999999999999975 689999999875432 135678999999999999999999999999999
Q ss_pred eeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCC----cEEEeeec
Q 003855 572 KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENM----AAHVSDFG 647 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~----~~kl~Dfg 647 (791)
.++||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||
T Consensus 90 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH----~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg 164 (321)
T 2a2a_A 90 VVLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLH----TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG 164 (321)
T ss_dssp EEEEECCCCSCBHHHHHHTCS-CEEHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEESCTTSSSCCEEECCCT
T ss_pred EEEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----hCCeecCCCChHHEEEecCCCCcCCEEEccCc
Confidence 999999999999999998654 4899999999999999999999 67899999999999999888 79999999
Q ss_pred cccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChh
Q 003855 648 ISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLT 727 (791)
Q Consensus 648 la~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 727 (791)
+++....... .....||+.|+|||.+.+..++.++||||||+++|||++|+.||...... .....+......
T Consensus 165 ~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~i~~~~~~--- 236 (321)
T 2a2a_A 165 LAHEIEDGVE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ--ETLANITSVSYD--- 236 (321)
T ss_dssp TCEECCTTCC---CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH--HHHHHHHTTCCC---
T ss_pred cceecCcccc---ccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHhcccc---
Confidence 9987654322 23346899999999999899999999999999999999999999753211 111111110000
Q ss_pred hhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 728 EVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 728 ~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.+. .....++..+.+++.+||+.||++|||+.|+++
T Consensus 237 --~~~---------~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 237 --FDE---------EFFSHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp --CCH---------HHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred --cCh---------hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 000 011234567889999999999999999999986
No 169
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=6.6e-40 Score=340.69 Aligned_cols=249 Identities=23% Similarity=0.390 Sum_probs=186.1
Q ss_pred hhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhhh---HHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQLE---RAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|++.+.||+|+||.||+|+. .+|+.||||++..... ...+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 46799999999999999999997 4789999999975432 2346788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+++++|.+++......+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~ 165 (278)
T 3cok_A 90 LEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLH----SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMP 165 (278)
T ss_dssp EECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHH----HTTEECSSCCGGGEEECTTCCEEECCCTTCEECC--
T ss_pred EecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH----HCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCC
Confidence 9999999999999987667999999999999999999999 678999999999999999999999999999876432
Q ss_pred CCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 656 EDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
.. ......||+.|+|||.+.+..++.++||||||+++|||++|+.||......+. ........ .
T Consensus 166 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-----~~~~~~~~--------~- 229 (278)
T 3cok_A 166 HE--KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT-----LNKVVLAD--------Y- 229 (278)
T ss_dssp ----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC----------CCSSC--------C-
T ss_pred CC--cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH-----HHHHhhcc--------c-
Confidence 21 12234689999999999988999999999999999999999999975322111 00000000 0
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+..++.++.+++.+||+.||++||++.|+++
T Consensus 230 ------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 230 ------EMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp ------CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ------CCccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 001124466789999999999999999999986
No 170
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=9.6e-40 Score=361.94 Aligned_cols=247 Identities=27% Similarity=0.411 Sum_probs=205.2
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|.+.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv 94 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV 94 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 367999999999999999999975 79999999997653 23356788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+++|+|.+++...+ .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 95 ~E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH----~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~ 169 (476)
T 2y94_A 95 MEYVSGGELFDYICKNG-RLDEKESRRLFQQILSGVDYCH----RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 169 (476)
T ss_dssp EECCSSEEHHHHTTSSS-SCCHHHHHHHHHHHHHHHHHHH----TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTT
T ss_pred EeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCCCcccccHHHEEEecCCCeEEEeccchhhcccc
Confidence 99999999999998654 4899999999999999999999 789999999999999999999999999999876543
Q ss_pred CCcceeecccccccccCCCccCCCCC-CccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhh
Q 003855 656 EDSVTQTMTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANL 734 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 734 (791)
.. ....+||+.|+|||++.+..+ +.++||||+||++|||++|+.||++... ......+.....
T Consensus 170 ~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~--~~~~~~i~~~~~----------- 233 (476)
T 2y94_A 170 EF---LRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV--PTLFKKICDGIF----------- 233 (476)
T ss_dssp CC---BCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS--HHHHHHHHTTCC-----------
T ss_pred cc---ccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH--HHHHHHHhcCCc-----------
Confidence 22 233569999999999887765 7899999999999999999999975321 111111111000
Q ss_pred hhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 735 VREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+..++..+.+++.+||+.||++|||+.|+++
T Consensus 234 -------~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 234 -------YTPQYLNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp -------CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred -------CCCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 001123456789999999999999999999987
No 171
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=1.5e-39 Score=346.43 Aligned_cols=261 Identities=23% Similarity=0.369 Sum_probs=207.1
Q ss_pred hhccccccccCCCcceEEEEEEe------cCCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI------SDGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFK 572 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 572 (791)
.++|++.+.||+|+||.||+|++ .+++.||||++.... ......+.+|+.++++++||||+++++++.+....
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 46899999999999999999984 257789999986442 34456788999999999999999999999999999
Q ss_pred eEEEecCCCCCHHHHHhhCC------CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCC---CCcEEE
Q 003855 573 ALVLEFMPNGSLEKWLYSHN------YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDE---NMAAHV 643 (791)
Q Consensus 573 ~lv~e~~~~g~L~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~---~~~~kl 643 (791)
++||||+++|+|.+++.... ..+++..++.++.|++.||.||| +.+|+||||||+||+++. +..+||
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH----~~~i~H~dlkp~NIli~~~~~~~~~kl 184 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE----ENHFIHRDIAARNCLLTCPGPGRVAKI 184 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEESCSSTTCCEEE
T ss_pred EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh----hCCeecCcCCHhHEEEecCCCcceEEE
Confidence 99999999999999998653 34889999999999999999999 678999999999999994 456999
Q ss_pred eeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhc
Q 003855 644 SDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESL 722 (791)
Q Consensus 644 ~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 722 (791)
+|||+++...............+++.|+|||.+.+..++.++||||||+++|||+| |+.||..... ......+....
T Consensus 185 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~~~~~~ 262 (327)
T 2yfx_A 185 GDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--QEVLEFVTSGG 262 (327)
T ss_dssp CCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHHHHHHHTTC
T ss_pred CccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCH--HHHHHHHhcCC
Confidence 99999986544333333344568899999999988889999999999999999998 9999875321 11222221111
Q ss_pred CCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHh
Q 003855 723 PHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKF 783 (791)
Q Consensus 723 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~ 783 (791)
.. ..+..++..+.+++.+||+.||++||++.|+++.|..+....
T Consensus 263 ~~-----------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~ 306 (327)
T 2yfx_A 263 RM-----------------DPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP 306 (327)
T ss_dssp CC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred CC-----------------CCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCH
Confidence 00 011234567889999999999999999999999999886543
No 172
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=1.3e-39 Score=345.69 Aligned_cols=248 Identities=22% Similarity=0.300 Sum_probs=180.3
Q ss_pred ccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhcc-CCccceeeeeeccCCeeeEEEecCCCCC
Q 003855 506 CNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVR-HRNLIKILSSCSNPDFKALVLEFMPNGS 583 (791)
Q Consensus 506 ~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~g~ 583 (791)
.+.||+|+||.||+|+.. +++.||||++.... ...+.+|+.+++.+. ||||+++++++.+....++||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKRM---EANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGGG---HHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChhh---hhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 378999999999999975 78999999987543 356678999999997 9999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCC---cEEEeeeccccccCCCCCcce
Q 003855 584 LEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENM---AAHVSDFGISKLLGEGEDSVT 660 (791)
Q Consensus 584 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~---~~kl~Dfgla~~~~~~~~~~~ 660 (791)
|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||+++....... .
T Consensus 93 L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH----~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~--~ 165 (325)
T 3kn6_A 93 LFERIKKKK-HFSETEASYIMRKLVSAVSHMH----DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQ--P 165 (325)
T ss_dssp HHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC------
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCC--c
Confidence 999998764 4899999999999999999999 67899999999999998765 899999999987644322 2
Q ss_pred eecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCc--chHHHHHHHhcCCChhhhcchhhhhhH
Q 003855 661 QTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE--MSLRRWVKESLPHGLTEVVDANLVREE 738 (791)
Q Consensus 661 ~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~ 738 (791)
.....||+.|+|||++.+..++.++||||+||++|||++|+.||....... ............... . .
T Consensus 166 ~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~-~-----~---- 235 (325)
T 3kn6_A 166 LKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDF-S-----F---- 235 (325)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCC-C-----C----
T ss_pred ccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCC-C-----C----
Confidence 234568999999999999999999999999999999999999997643211 111111111111100 0 0
Q ss_pred HhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 739 QAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 739 ~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.......++.++.+++.+||+.||++|||+.|+++
T Consensus 236 -~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 236 -EGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp -CSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred -CcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 00112245677889999999999999999998863
No 173
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.3e-39 Score=351.76 Aligned_cols=270 Identities=20% Similarity=0.223 Sum_probs=206.8
Q ss_pred ChhHHHHHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhcc-----CCccceeeee
Q 003855 492 PYLDIQRATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVR-----HRNLIKILSS 565 (791)
Q Consensus 492 ~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----h~niv~l~~~ 565 (791)
.+.+.....++|++.+.||+|+||.||+|+.. +++.||||++... ....+.+..|+.+++.+. ||||++++++
T Consensus 26 ~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~ 104 (360)
T 3llt_A 26 SWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKYHGK 104 (360)
T ss_dssp CCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEE
T ss_pred eeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeecccce
Confidence 34444555689999999999999999999974 7899999998743 233456778999999986 9999999999
Q ss_pred eccCCeeeEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCC-------
Q 003855 566 CSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDE------- 637 (791)
Q Consensus 566 ~~~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~------- 637 (791)
+...+..++||||+ +++|.+++.... ..+++..+..++.||+.||+||| +.+|+||||||+|||++.
T Consensus 105 ~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivHrDlkp~NIll~~~~~~~~~ 179 (360)
T 3llt_A 105 FMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR----KMSLTHTDLKPENILLDDPYFEKSL 179 (360)
T ss_dssp EEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEESCTTCCEEE
T ss_pred eeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH----HCCeeeCCCCcccEEEccccccccc
Confidence 99999999999999 999999998654 35899999999999999999999 678999999999999975
Q ss_pred ------------------CCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh
Q 003855 638 ------------------NMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 699 (791)
Q Consensus 638 ------------------~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt 699 (791)
++.+||+|||+|+...... ....||+.|+|||++.+..++.++|||||||++|||++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~ 254 (360)
T 3llt_A 180 ITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH-----GSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYT 254 (360)
T ss_dssp EEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC-----CSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHH
T ss_pred cchhcccccccccccccCCCCEEEEeccCceecCCCC-----cCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHH
Confidence 8899999999998754322 23468999999999999999999999999999999999
Q ss_pred CCCCCCccccCcchHHHHHHHhcCCChhhh------------cchhh-h----hhH---H--------hhHHHHHHHHHH
Q 003855 700 RKRPTDEMFTGEMSLRRWVKESLPHGLTEV------------VDANL-V----REE---Q--------AFSAKMDCILSI 751 (791)
Q Consensus 700 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------------~d~~~-~----~~~---~--------~~~~~~~~~~~l 751 (791)
|+.||...... .....+........... ++... . ... . ...........+
T Consensus 255 g~~pf~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (360)
T 3llt_A 255 GSLLFRTHEHM--EHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELF 332 (360)
T ss_dssp SSCSCCCSSHH--HHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHH
T ss_pred CCCCCCCCcHH--HHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHH
Confidence 99999753221 11111111111110000 00000 0 000 0 000011122567
Q ss_pred HHHHhhccccCCCCCCCHHHHHH
Q 003855 752 MDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 752 ~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.+++.+||+.||++|||+.|+++
T Consensus 333 ~~li~~~L~~dP~~Rpta~elL~ 355 (360)
T 3llt_A 333 CDFLYSILQIDPTLRPSPAELLK 355 (360)
T ss_dssp HHHHHHHCCSSGGGSCCHHHHTT
T ss_pred HHHHHHHhcCChhhCCCHHHHhc
Confidence 89999999999999999999975
No 174
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-40 Score=354.47 Aligned_cols=267 Identities=11% Similarity=0.110 Sum_probs=209.0
Q ss_pred hhccccccccCCCcceEEEEEEecC---------CcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccce---------
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISD---------GTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIK--------- 561 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~--------- 561 (791)
.++|++.+.||+|+||.||+|+... ++.||||++... +.+.+|++++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 3689999999999999999999753 789999998754 35778999999999999998
Q ss_pred ------eeeeecc-CCeeeEEEecCCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCe
Q 003855 562 ------ILSSCSN-PDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNI 633 (791)
Q Consensus 562 ------l~~~~~~-~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Ni 633 (791)
+++++.. ....++||||+ +|+|.+++... ...+++..+..++.||+.||+||| +.+|+||||||+||
T Consensus 116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dikp~NI 190 (352)
T 2jii_A 116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLH----ENEYVHGNVTAENI 190 (352)
T ss_dssp TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH----HTTCBCSCCCGGGE
T ss_pred ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHH----hCCccCCCCCHHHE
Confidence 4556554 67889999999 99999999865 345999999999999999999999 67899999999999
Q ss_pred EeCCCC--cEEEeeeccccccCCCCCc-----ceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCc
Q 003855 634 LLDENM--AAHVSDFGISKLLGEGEDS-----VTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 706 (791)
Q Consensus 634 ll~~~~--~~kl~Dfgla~~~~~~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~ 706 (791)
+++.++ .+||+|||+++.+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus 191 l~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~ 270 (352)
T 2jii_A 191 FVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTN 270 (352)
T ss_dssp EEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGG
T ss_pred EEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCccc
Confidence 999998 9999999999876543211 112334789999999999998999999999999999999999999987
Q ss_pred cccCcchHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcc
Q 003855 707 MFTGEMSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLD 785 (791)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~ 785 (791)
.................. .....+.. .....++..+.+++.+||+.||++||++.++++.|+++......
T Consensus 271 ~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~ 340 (352)
T 2jii_A 271 CLPNTEDIMKQKQKFVDK-PGPFVGPC--------GHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLRV 340 (352)
T ss_dssp GTTCHHHHHHHHHHHHHS-CCCEECTT--------SCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHhccCC-hhhhhhhc--------cccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcCC
Confidence 543332222222111000 00000000 00012356788999999999999999999999999999877543
No 175
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=1.7e-39 Score=344.32 Aligned_cols=266 Identities=23% Similarity=0.309 Sum_probs=198.2
Q ss_pred hccccc-cccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCeeeEEEe
Q 003855 501 DEFNEC-NLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 501 ~~~~~~-~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 577 (791)
+.|++. +.||+|+||.||+|+.. +++.||||++........+.+.+|+.++.++ +||||+++++++.+.+..++|||
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e 91 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE 91 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence 567774 78999999999999964 7899999999766555567888999999985 79999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCc---EEEeeeccccccCC
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMA---AHVSDFGISKLLGE 654 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~---~kl~Dfgla~~~~~ 654 (791)
|+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+++....
T Consensus 92 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH----~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~ 166 (316)
T 2ac3_A 92 KMRGGSILSHIHKRR-HFNELEASVVVQDVASALDFLH----NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKL 166 (316)
T ss_dssp CCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC----
T ss_pred cCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH----hCCceeCCCCHHHEEEccCCCcCceEEEEccCcccccc
Confidence 999999999998654 4899999999999999999999 678999999999999998776 99999999986543
Q ss_pred CCC-----cceeecccccccccCCCccCC-----CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCC
Q 003855 655 GED-----SVTQTMTMATIGYMAPEYGSE-----GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPH 724 (791)
Q Consensus 655 ~~~-----~~~~~~~~g~~~y~aPE~~~~-----~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 724 (791)
... ........||+.|+|||++.. ..++.++|||||||++|||++|+.||............ .....
T Consensus 167 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~---~~~~~ 243 (316)
T 2ac3_A 167 NGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDR---GEACP 243 (316)
T ss_dssp ---------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC-------CCH
T ss_pred CCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccc---cccch
Confidence 221 111223468999999998764 56889999999999999999999999764332210000 00000
Q ss_pred ChhhhcchhhhhhHHhh--HHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 725 GLTEVVDANLVREEQAF--SAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 725 ~~~~~~d~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.....+...+....... .....++..+.+++.+||+.||++|||+.|+++
T Consensus 244 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 244 ACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp HHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred hHHHHHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 00000000000000000 011235677889999999999999999999987
No 176
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=7.4e-40 Score=339.71 Aligned_cols=245 Identities=27% Similarity=0.394 Sum_probs=180.9
Q ss_pred hccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
++|++.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 57999999999999999999864 78999999986542 333567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~ 656 (791)
||+ ++++.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||++++++.+||+|||+++......
T Consensus 93 e~~-~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~LH----~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 166 (275)
T 2eue_A 93 EYA-GNELFDYIVQRD-KMSEQEARRFFQQIISAVEYCH----RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN 166 (275)
T ss_dssp ECC-CEEHHHHHHTSS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCSGGGEEECTTSCEEECCSSCC-------
T ss_pred hhc-CCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCCeeccCChHhEEECCCCCEEEeecccceeccCcc
Confidence 999 779999887654 4899999999999999999999 6789999999999999999999999999998764432
Q ss_pred CcceeecccccccccCCCccCCCCC-CccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 657 DSVTQTMTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
. .....||+.|+|||.+.+..+ +.++||||+|+++|||++|+.||..... ......+.....
T Consensus 167 ~---~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~~~~~~~------------ 229 (275)
T 2eue_A 167 F---LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI--PVLFKNISNGVY------------ 229 (275)
T ss_dssp -----------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTCC------------
T ss_pred c---ccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhCCC------------
Confidence 2 223468999999999887665 7899999999999999999999975321 111111111000
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+..++..+.+++.+|++.||++|||+.|+++
T Consensus 230 ------~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 230 ------TLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp ------CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ------CCCccCCHHHHHHHHHHhhcCHhHCCCHHHHhh
Confidence 011124466789999999999999999999975
No 177
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.3e-39 Score=358.94 Aligned_cols=349 Identities=22% Similarity=0.227 Sum_probs=282.0
Q ss_pred CCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEecc
Q 003855 15 LQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLG 94 (791)
Q Consensus 15 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 94 (791)
-+.++.++++++ .+|..+. +++++|+|++|+|+ .++...+..+++|++|+|++|.|+++.|..|.++++|++|+|+
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 467889999987 4566553 58999999999998 5544444448999999999999998889999999999999999
Q ss_pred CccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhc
Q 003855 95 FNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYA 174 (791)
Q Consensus 95 ~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l 174 (791)
+|+++.+.+..|.++++|+.|++++|++..+... .|..+++|++|+|++|.+++.
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--------~~~~l~~L~~L~l~~n~l~~~----------------- 143 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY--------MFQDLYNLKSLEVGDNDLVYI----------------- 143 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT--------TTTTCTTCCEEEECCTTCCEE-----------------
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChh--------HccccccCCEEECCCCcccee-----------------
Confidence 9999988888899999999999999999876543 388899999999999988754
Q ss_pred ccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCC
Q 003855 175 YECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGH 254 (791)
Q Consensus 175 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 254 (791)
.+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+.+.
T Consensus 144 --------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~ 215 (477)
T 2id5_A 144 --------SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215 (477)
T ss_dssp --------CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred --------ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc
Confidence 344567778888888888888877666788888888888888888877777888888888888888877666
Q ss_pred CCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhcc
Q 003855 255 IPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGAL 334 (791)
Q Consensus 255 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 334 (791)
+|..+....+|++|+|++|++++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..|..+
T Consensus 216 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (477)
T 2id5_A 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295 (477)
T ss_dssp ECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred cCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence 66666666788888888888886655678888888888888888888777788888899999999999988888888899
Q ss_pred ccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCC
Q 003855 335 KDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPV 401 (791)
Q Consensus 335 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~ 401 (791)
++|+.|+|++|+|++..+..|..+++|+.|+|++|++.+..+. ..-...+..+++.++...|..|.
T Consensus 296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL-LWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG-HHHHTTTTSSCCTTCCCBEEESG
T ss_pred ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch-HhHHhhhhccccCccCceeCCch
Confidence 9999999999999977777788899999999999999854332 22223344566677777766554
No 178
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.9e-40 Score=349.31 Aligned_cols=266 Identities=20% Similarity=0.270 Sum_probs=199.1
Q ss_pred hccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhH-HHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEec
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLER-AFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEF 578 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 578 (791)
++|++.+.||+|+||.||+|+.. +++.||||++...... ....+.+|+.++++++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 57999999999999999999975 7899999998654322 122455799999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCc
Q 003855 579 MPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDS 658 (791)
Q Consensus 579 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~ 658 (791)
++ |+|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH----~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~-- 154 (324)
T 3mtl_A 82 LD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCH----RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPT-- 154 (324)
T ss_dssp CS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH----HTTEEESSCCGGGEEECTTCCEEECSSSEEECC------
T ss_pred cc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----HCCccCCCcCHHHEEECCCCCEEEccCcccccccCCc--
Confidence 97 5999999987777999999999999999999999 6789999999999999999999999999998654322
Q ss_pred ceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhc---CCChhhhcchhh
Q 003855 659 VTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESL---PHGLTEVVDANL 734 (791)
Q Consensus 659 ~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~ 734 (791)
.......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.... ........... ...+........
T Consensus 155 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~ 233 (324)
T 3mtl_A 155 KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVE-EQLHFIFRILGTPTEETWPGILSNEE 233 (324)
T ss_dssp --------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCCTTTSTTGGGCHH
T ss_pred cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCChHhchhhhcchh
Confidence 22333468999999998766 66899999999999999999999999763222 11222111111 111111111100
Q ss_pred hhh--------HHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 735 VRE--------EQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 735 ~~~--------~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
... .........++..+.+++.+||+.||++|||+.|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 234 FKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp HHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 000 0001112235567889999999999999999999986
No 179
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=5.3e-40 Score=347.13 Aligned_cols=262 Identities=22% Similarity=0.368 Sum_probs=198.7
Q ss_pred hhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCe----
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDF---- 571 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~---- 571 (791)
.++|++.+.||+|+||.||+|+. .+++.||||++.... ......+.+|+.++++++||||+++++++.....
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 46899999999999999999996 578999999997643 3445678899999999999999999999865443
Q ss_pred eeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccc
Q 003855 572 KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKL 651 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~ 651 (791)
.++||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~ 165 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIADACQALNFSH----QNGIIHRDVKPANIMISATNAVKVMDFGIARA 165 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEEETTSCEEECCCSCC--
T ss_pred cEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCCCcCCCCHHHEEEcCCCCEEEeeccCccc
Confidence 489999999999999998654 3899999999999999999999 67899999999999999999999999999987
Q ss_pred cCCCCCc-ceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhc
Q 003855 652 LGEGEDS-VTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVV 730 (791)
Q Consensus 652 ~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (791)
+...... .......||+.|+|||.+.+..++.++|||||||++|||++|+.||......+. ....... ...
T Consensus 166 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~-~~~~~~~---~~~---- 237 (311)
T 3ork_A 166 IADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSV-AYQHVRE---DPI---- 237 (311)
T ss_dssp ----------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHC---CCC----
T ss_pred ccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHH-HHHHhcC---CCC----
Confidence 6543322 222334689999999999988999999999999999999999999976322111 1111110 000
Q ss_pred chhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHH-HHHHHHHHHH
Q 003855 731 DANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDA-AAKLKKIKVK 782 (791)
Q Consensus 731 d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev-~~~L~~~~~~ 782 (791)
. .......++..+.+++.+||+.||++||++.++ ...+.+....
T Consensus 238 ~--------~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~ 282 (311)
T 3ork_A 238 P--------PSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNG 282 (311)
T ss_dssp C--------HHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHTT
T ss_pred C--------cccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhcC
Confidence 0 001112356778899999999999999966655 4556555433
No 180
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.9e-40 Score=350.45 Aligned_cols=243 Identities=25% Similarity=0.339 Sum_probs=202.6
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhh--------HHHHHHHHHHHHHHhccCCccceeeeeeccC
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLE--------RAFRSFDSECEVLRNVRHRNLIKILSSCSNP 569 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~ 569 (791)
..++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|+.++++++||||+++++++.+.
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 4578999999999999999999864 789999999875431 1234567799999999999999999999999
Q ss_pred CeeeEEEecCCCC-CHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecc
Q 003855 570 DFKALVLEFMPNG-SLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGI 648 (791)
Q Consensus 570 ~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgl 648 (791)
+..++||||+.+| +|.+++..... +++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~~~~~-l~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~ 176 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFIDRHPR-LDEPLASYIFRQLVSAVGYLR----LKDIIHRDIKDENIVIAEDFTIKLIDFGS 176 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHHTCCC-CCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTSCEEECCCTT
T ss_pred CEEEEEEEeCCCCccHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHH----hCCeEEeccCHHHEEEcCCCcEEEeeccc
Confidence 9999999999777 99999986644 899999999999999999999 67899999999999999999999999999
Q ss_pred ccccCCCCCcceeecccccccccCCCccCCCCC-CccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChh
Q 003855 649 SKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLT 727 (791)
Q Consensus 649 a~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 727 (791)
++....... .....||+.|+|||++.+..+ +.++|||||||++|||++|+.||.......
T Consensus 177 a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~---------------- 237 (335)
T 3dls_A 177 AAYLERGKL---FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEETV---------------- 237 (335)
T ss_dssp CEECCTTCC---BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGGT----------------
T ss_pred ceECCCCCc---eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHHH----------------
Confidence 987754432 223468999999999887776 889999999999999999999997522110
Q ss_pred hhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHH
Q 003855 728 EVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAK 775 (791)
Q Consensus 728 ~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~ 775 (791)
.... ..+..++.++.+++.+||+.||++|||+.|+++.
T Consensus 238 ---~~~~-------~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 238 ---EAAI-------HPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp ---TTCC-------CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred ---hhcc-------CCCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0000 0011234668899999999999999999999874
No 181
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=1.2e-39 Score=365.63 Aligned_cols=250 Identities=25% Similarity=0.345 Sum_probs=207.2
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|+..+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 467999999999999999999975 79999999997643 23456688999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCC
Q 003855 576 LEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~ 654 (791)
|||+++|+|.+++.... ..+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+....
T Consensus 263 mEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH----~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~ 338 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLH----RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPE 338 (576)
T ss_dssp ECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH----HCCEeccCCchheEEEeCCCCeEEEecccceeccc
Confidence 99999999999998653 34899999999999999999999 67899999999999999999999999999987754
Q ss_pred CCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcc--hHHHHHHHhcCCChhhhcch
Q 003855 655 GEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEM--SLRRWVKESLPHGLTEVVDA 732 (791)
Q Consensus 655 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~ 732 (791)
... ....+||+.|+|||++.+..++.++|||||||++|||++|+.||........ .+.+.+... +...
T Consensus 339 ~~~---~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~-~~~~------ 408 (576)
T 2acx_A 339 GQT---IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEV-PEEY------ 408 (576)
T ss_dssp TCC---EECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHC-CCCC------
T ss_pred Ccc---ccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcc-cccC------
Confidence 332 2335799999999999998999999999999999999999999976432211 111111111 0000
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCC-----CHHHHHH
Q 003855 733 NLVREEQAFSAKMDCILSIMDLALDCCIESPDMRI-----NVTDAAA 774 (791)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RP-----t~~ev~~ 774 (791)
+..++.++.+++.+||+.||++|| ++.|+++
T Consensus 409 -----------p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 409 -----------SERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp -----------CTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred -----------CccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 113456678999999999999999 7888875
No 182
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=3.7e-39 Score=359.63 Aligned_cols=195 Identities=27% Similarity=0.388 Sum_probs=155.3
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeec-----cCCe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCS-----NPDF 571 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~-----~~~~ 571 (791)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.++++++||||+++++++. ....
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 468999999999999999999865 78999999986532 344567889999999999999999999984 3357
Q ss_pred eeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccc
Q 003855 572 KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKL 651 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~ 651 (791)
.++||||+ +|+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+.
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~~-~l~~~~~~~~~~qi~~aL~~LH----~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~ 205 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFRTPV-YLTELHIKTLLYNLLVGVKYVH----SAGILHRDLKPANCLVNQDCSVKVCDFGLART 205 (458)
T ss_dssp EEEEECCC-SEEHHHHHHSSC-CCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEEecc-ccchhhhcccCC-CCCHHHHHHHHHHHHHHHHHHH----hCCcCCCCCChhhEEECCCCCEeecccccchh
Confidence 89999998 579999997654 4899999999999999999999 67899999999999999999999999999987
Q ss_pred cCCCCCc-------------------------ceeecccccccccCCCcc-CCCCCCccccHHhHHHHHHHHHhC
Q 003855 652 LGEGEDS-------------------------VTQTMTMATIGYMAPEYG-SEGIVSAKCDVYSYGVLLMETFTR 700 (791)
Q Consensus 652 ~~~~~~~-------------------------~~~~~~~g~~~y~aPE~~-~~~~~~~~~Dv~s~G~vl~elltg 700 (791)
....... ......+||++|+|||++ ....++.++|||||||++|||++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 206 VDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp TTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred ccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 6432211 123345789999999975 567799999999999999999993
No 183
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=6.7e-40 Score=358.08 Aligned_cols=276 Identities=22% Similarity=0.288 Sum_probs=212.5
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCC--eeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPD--FKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv 575 (791)
.++|++.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++||||+++++++.+.. ..++|
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 367999999999999999999976 58999999997543 334567789999999999999999999987654 77999
Q ss_pred EecCCCCCHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEe----CCCCcEEEeeeccc
Q 003855 576 LEFMPNGSLEKWLYSHN--YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILL----DENMAAHVSDFGIS 649 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill----~~~~~~kl~Dfgla 649 (791)
|||+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||+|
T Consensus 88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a 163 (396)
T 4eut_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR----ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAA 163 (396)
T ss_dssp ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEEEECTTSCEEEEECCGGGC
T ss_pred EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH----HCCEEECCcCHHHEEEeecCCCceeEEEecCCCc
Confidence 99999999999998543 23899999999999999999999 6789999999999999 78888999999999
Q ss_pred cccCCCCCcceeecccccccccCCCccCC--------CCCCccccHHhHHHHHHHHHhCCCCCCccccCcch---HHHHH
Q 003855 650 KLLGEGEDSVTQTMTMATIGYMAPEYGSE--------GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMS---LRRWV 718 (791)
Q Consensus 650 ~~~~~~~~~~~~~~~~g~~~y~aPE~~~~--------~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~---~~~~~ 718 (791)
+...... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......... +.+..
T Consensus 164 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~ 240 (396)
T 4eut_A 164 RELEDDE---QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKII 240 (396)
T ss_dssp EECCCGG---GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHH
T ss_pred eEccCCC---ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHh
Confidence 8765432 2233568999999998754 56788999999999999999999999754332222 22222
Q ss_pred HHhcCCChhhhcc---hhhhh---hHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 719 KESLPHGLTEVVD---ANLVR---EEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 719 ~~~~~~~~~~~~d---~~~~~---~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
....+.....+.. ..+.. ..........++..+.+++.+||+.||++||++.|+++.+..+..+
T Consensus 241 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~ 310 (396)
T 4eut_A 241 TGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR 310 (396)
T ss_dssp HSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred cCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence 2221111110000 00000 0000011235677889999999999999999999999999887654
No 184
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=6.9e-39 Score=333.95 Aligned_cols=261 Identities=23% Similarity=0.309 Sum_probs=208.5
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhh------HHHHHHHHHHHHHHhccCCccceeeeeeccCCee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLE------RAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFK 572 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 572 (791)
.++|++.+.||+|+||.||+|+.. +++.||+|++..... ...+.+.+|+.++++++||||+++++++.+....
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 83 (283)
T 3bhy_A 4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDV 83 (283)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeE
Confidence 467999999999999999999976 789999999865421 1356789999999999999999999999999999
Q ss_pred eEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCC----cEEEeeecc
Q 003855 573 ALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENM----AAHVSDFGI 648 (791)
Q Consensus 573 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~----~~kl~Dfgl 648 (791)
++||||+++++|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++ .+||+|||+
T Consensus 84 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~ 158 (283)
T 3bhy_A 84 VLILELVSGGELFDFLAEKE-SLTEDEATQFLKQILDGVHYLH----SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGI 158 (283)
T ss_dssp EEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred EEEEeecCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----hCCccCCCCChHHEEEecCCCCCCceEEEeccc
Confidence 99999999999999997643 4899999999999999999999 67899999999999999877 899999999
Q ss_pred ccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhh
Q 003855 649 SKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTE 728 (791)
Q Consensus 649 a~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (791)
++....... .....|++.|+|||.+.+..++.++||||||+++|||++|+.||...... .....+...... .
T Consensus 159 ~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~~-~-- 230 (283)
T 3bhy_A 159 AHKIEAGNE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQ--ETLTNISAVNYD-F-- 230 (283)
T ss_dssp CEECC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHTTCCC-C--
T ss_pred ceeccCCCc---ccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchH--HHHHHhHhcccC-C--
Confidence 987644322 22346899999999999899999999999999999999999999753211 111111100000 0
Q ss_pred hcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH--HHHHHHHHhc
Q 003855 729 VVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA--KLKKIKVKFL 784 (791)
Q Consensus 729 ~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~--~L~~~~~~~~ 784 (791)
. ......++..+.+++.+||+.||++||++.|+++ .++.++.+..
T Consensus 231 --~---------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~~~~ 277 (283)
T 3bhy_A 231 --D---------EEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRRRNV 277 (283)
T ss_dssp --C---------HHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHHCCC
T ss_pred --c---------chhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHHHhh
Confidence 0 0111234567889999999999999999999997 5666655543
No 185
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=1.2e-40 Score=377.24 Aligned_cols=258 Identities=28% Similarity=0.449 Sum_probs=210.6
Q ss_pred HhhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEec
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEF 578 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 578 (791)
..++|++.+.||+|+||.||+|+++++..||||++..... ..+.+.+|+++|++++||||+++++++.+ +..++||||
T Consensus 265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~ 342 (535)
T 2h8h_A 265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 342 (535)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeeh
Confidence 3467899999999999999999998888899999975432 34678999999999999999999999976 678999999
Q ss_pred CCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCC
Q 003855 579 MPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGED 657 (791)
Q Consensus 579 ~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~ 657 (791)
+++|+|.+++... ...+++.++..++.||+.||+||| +.+|+||||||+|||+++++.+||+|||+++......
T Consensus 343 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH----~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~- 417 (535)
T 2h8h_A 343 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE----RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE- 417 (535)
T ss_dssp CTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHH-
T ss_pred hcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH----hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCc-
Confidence 9999999999853 345899999999999999999999 6789999999999999999999999999998764321
Q ss_pred cceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhh
Q 003855 658 SVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVR 736 (791)
Q Consensus 658 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 736 (791)
........++..|+|||++..+.++.++|||||||++|||+| |+.||.+....+ ....+....
T Consensus 418 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~--~~~~i~~~~-------------- 481 (535)
T 2h8h_A 418 YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--VLDQVERGY-------------- 481 (535)
T ss_dssp HHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHH--HHHHHHTTC--------------
T ss_pred eecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCC--------------
Confidence 111223346788999999988899999999999999999999 899997642211 111111100
Q ss_pred hHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 737 EEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 737 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
..+.+..++..+.++|.+||+.||++|||+.++++.|+.+...
T Consensus 482 ---~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~ 524 (535)
T 2h8h_A 482 ---RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS 524 (535)
T ss_dssp ---CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCC
T ss_pred ---CCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhc
Confidence 0111224567788999999999999999999999999887543
No 186
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.7e-39 Score=342.02 Aligned_cols=266 Identities=21% Similarity=0.241 Sum_probs=199.9
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
.++|++.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (311)
T 4agu_A 2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVF 81 (311)
T ss_dssp -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEE
Confidence 367999999999999999999975 68999999885443 334567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~ 656 (791)
||+++++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 82 e~~~~~~l~~~~~~~~-~~~~~~~~~i~~~l~~~l~~lH----~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 156 (311)
T 4agu_A 82 EYCDHTVLHELDRYQR-GVPEHLVKSITWQTLQAVNFCH----KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPS 156 (311)
T ss_dssp ECCSEEHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC---
T ss_pred EeCCCchHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHHH----HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcc
Confidence 9999999999887554 4899999999999999999999 6789999999999999999999999999998765332
Q ss_pred CcceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChh---hhcch
Q 003855 657 DSVTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLT---EVVDA 732 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~ 732 (791)
. ......||..|+|||.+.+ ..++.++||||+|+++|||++|+.||.+....+ ....+......... .....
T Consensus 157 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 232 (311)
T 4agu_A 157 D--YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVD--QLYLIRKTLGDLIPRHQQVFST 232 (311)
T ss_dssp -----------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH--HHHHHHHHHCSCCHHHHHHHHT
T ss_pred c--ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHHHhccccccccccccc
Confidence 2 2233468999999998765 678999999999999999999999997643221 11111111111000 00000
Q ss_pred h----------hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 733 N----------LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 733 ~----------~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
. .............++..+.+++.+||+.||++|||+.|+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 233 NQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp CGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred ccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 0 00000000011235667889999999999999999999985
No 187
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=342.23 Aligned_cols=267 Identities=24% Similarity=0.295 Sum_probs=199.1
Q ss_pred HhhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhh-----hHHHHHHHHHHHHHHhc---cCCccceeeeeeccC
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQL-----ERAFRSFDSECEVLRNV---RHRNLIKILSSCSNP 569 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~e~~~l~~l---~h~niv~l~~~~~~~ 569 (791)
..++|++.+.||+|+||.||+|+. .+++.||||++.... ......+.+|+.+++++ +||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 467899999999999999999996 478999999986432 11123556677777666 499999999999765
Q ss_pred C-----eeeEEEecCCCCCHHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEE
Q 003855 570 D-----FKALVLEFMPNGSLEKWLYSHNY-FLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHV 643 (791)
Q Consensus 570 ~-----~~~lv~e~~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl 643 (791)
. ..++||||+. |+|.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH----~~~ivH~Dlkp~Nil~~~~~~~kl 161 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH----ANCIVHRDLKPENILVTSGGTVKL 161 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCTTTEEECTTSCEEE
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCCHHHEEEcCCCCEEE
Confidence 4 5789999996 699999986543 4899999999999999999999 678999999999999999999999
Q ss_pred eeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcC
Q 003855 644 SDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLP 723 (791)
Q Consensus 644 ~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 723 (791)
+|||+|+...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||...... ..+.........
T Consensus 162 ~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-~~~~~i~~~~~~ 237 (308)
T 3g33_A 162 ADFGLARIYSYQM---ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEA-DQLGKIFDLIGL 237 (308)
T ss_dssp CSCSCTTTSTTCC---CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHH-HHHHHHHHHHCC
T ss_pred eeCccccccCCCc---ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCC
Confidence 9999998764332 223456899999999998889999999999999999999999999763222 112222221110
Q ss_pred ---CChhhhc---chhhhhh--HHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 724 ---HGLTEVV---DANLVRE--EQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 724 ---~~~~~~~---d~~~~~~--~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+.... ...+... ........+++..+.+++.+||+.||++|||+.|+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 238 PPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp CCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 0000000 0000000 0000111235577889999999999999999999986
No 188
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=346.46 Aligned_cols=258 Identities=21% Similarity=0.255 Sum_probs=192.1
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhcc-CCccceeeeee--------ccC
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVR-HRNLIKILSSC--------SNP 569 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~--------~~~ 569 (791)
..+|++.+.||+|+||.||+|+.. +++.||||++........+.+.+|+.+++++. ||||+++++++ ...
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 358999999999999999999965 78999999987666666778899999999996 99999999998 344
Q ss_pred CeeeEEEecCCCCCHHHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHHccCCCCC--eEecCCCCCCeEeCCCCcEEEee
Q 003855 570 DFKALVLEFMPNGSLEKWLYS--HNYFLDILERLNIMIDVGSALEYLHHGHSSAP--IIHCDLKPTNILLDENMAAHVSD 645 (791)
Q Consensus 570 ~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~--i~H~dlk~~Nill~~~~~~kl~D 645 (791)
...++||||+. |+|.+++.. ....+++..+..++.||+.||+||| +.+ |+||||||+||+++.++.+||+|
T Consensus 107 ~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH----~~~~~ivH~Dikp~NIl~~~~~~~kl~D 181 (337)
T 3ll6_A 107 AEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMH----RQKPPIIHRDLKVENLLLSNQGTIKLCD 181 (337)
T ss_dssp EEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHH----TSSSCCBCCCCCGGGCEECTTSCEEBCC
T ss_pred ceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH----hCCCCEEEccCCcccEEECCCCCEEEec
Confidence 55789999995 799999874 3445999999999999999999999 567 99999999999999999999999
Q ss_pred eccccccCCCCCcc----------eeecccccccccCCCcc---CCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcc
Q 003855 646 FGISKLLGEGEDSV----------TQTMTMATIGYMAPEYG---SEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEM 712 (791)
Q Consensus 646 fgla~~~~~~~~~~----------~~~~~~g~~~y~aPE~~---~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~ 712 (791)
||+++......... ......||+.|+|||++ .+..++.++|||||||++|||++|+.||......
T Consensus 182 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~-- 259 (337)
T 3ll6_A 182 FGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL-- 259 (337)
T ss_dssp CTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC--------
T ss_pred CccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH--
Confidence 99998765433211 11134589999999987 5677899999999999999999999999653211
Q ss_pred hHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhc
Q 003855 713 SLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFL 784 (791)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~ 784 (791)
.......... ....++..+.+++.+||+.||++||++.|+++.|..+.....
T Consensus 260 ---~~~~~~~~~~-----------------~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~ 311 (337)
T 3ll6_A 260 ---RIVNGKYSIP-----------------PHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARN 311 (337)
T ss_dssp ---------CCCC-----------------TTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred ---HhhcCcccCC-----------------cccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccC
Confidence 1111111000 011122346789999999999999999999999999976543
No 189
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=4.9e-40 Score=365.09 Aligned_cols=249 Identities=24% Similarity=0.261 Sum_probs=196.1
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeE
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 574 (791)
..++|++.+.||+|+||.||+|+.. +|+.||||++.... ......+.+|+.++++++||||+++++++.+.+..++
T Consensus 146 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l 225 (446)
T 4ejn_A 146 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCF 225 (446)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEE
T ss_pred ChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEE
Confidence 3478999999999999999999965 78999999997653 3344567889999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCC-CCeEecCCCCCCeEeCCCCcEEEeeeccccccC
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSS-APIIHCDLKPTNILLDENMAAHVSDFGISKLLG 653 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~ 653 (791)
||||+++|+|.+++.... .+++..+..++.||+.||+||| + .+|+||||||+|||++.++.+||+|||+|+...
T Consensus 226 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH----~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 300 (446)
T 4ejn_A 226 VMEYANGGELFFHLSRER-VFSEDRARFYGAEIVSALDYLH----SEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGI 300 (446)
T ss_dssp EECCCSSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH----HHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTC
T ss_pred EEeeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHh----hcCCEEECCCCHHHEEECCCCCEEEccCCCceecc
Confidence 999999999999998654 4899999999999999999999 5 689999999999999999999999999998643
Q ss_pred CCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchh
Q 003855 654 EGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDAN 733 (791)
Q Consensus 654 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 733 (791)
... ......+||++|+|||++.+..++.++|||||||++|||++|+.||..... ......+.....
T Consensus 301 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~~~~~i~~~~~---------- 366 (446)
T 4ejn_A 301 KDG--ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--EKLFELILMEEI---------- 366 (446)
T ss_dssp C-------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCCC----------
T ss_pred CCC--cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH--HHHHHHHHhCCC----------
Confidence 322 223345799999999999999999999999999999999999999965321 111111111000
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCC-----CHHHHHH
Q 003855 734 LVREEQAFSAKMDCILSIMDLALDCCIESPDMRI-----NVTDAAA 774 (791)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RP-----t~~ev~~ 774 (791)
..+..++.++.+++.+||+.||++|| ++.|+++
T Consensus 367 --------~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 367 --------RFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp --------CCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred --------CCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 00112446678999999999999999 9999975
No 190
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=7.9e-40 Score=341.25 Aligned_cols=255 Identities=24% Similarity=0.365 Sum_probs=205.5
Q ss_pred HHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeecc--------
Q 003855 498 RATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSN-------- 568 (791)
Q Consensus 498 ~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-------- 568 (791)
....+|++.+.||+|+||.||+|+.. +++.||+|++.... +.+.+|++++++++||||+++++++..
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~ 83 (284)
T 2a19_B 8 RFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETS 83 (284)
T ss_dssp HHHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC----
T ss_pred hhccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccc
Confidence 34578999999999999999999986 79999999987553 245679999999999999999998754
Q ss_pred --------CCeeeEEEecCCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCC
Q 003855 569 --------PDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENM 639 (791)
Q Consensus 569 --------~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~ 639 (791)
....++||||+++|+|.+++... ...+++..+..++.|++.||.||| +.+|+||||||+||++++++
T Consensus 84 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dlkp~Nil~~~~~ 159 (284)
T 2a19_B 84 SKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH----SKKLINRDLKPSNIFLVDTK 159 (284)
T ss_dssp -----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEEETT
T ss_pred cccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH----hCCeeeccCCHHHEEEcCCC
Confidence 44578999999999999999854 345899999999999999999999 67899999999999999999
Q ss_pred cEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHH
Q 003855 640 AAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVK 719 (791)
Q Consensus 640 ~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~ 719 (791)
.+||+|||+++....... .....|++.|+|||.+.+..++.++||||||+++|||++|..|+... ..+..
T Consensus 160 ~~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~-------~~~~~ 229 (284)
T 2a19_B 160 QVKIGDFGLVTSLKNDGK---RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET-------SKFFT 229 (284)
T ss_dssp EEEECCCTTCEESSCCSC---CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH-------HHHHH
T ss_pred CEEECcchhheecccccc---ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH-------HHHHH
Confidence 999999999987654322 22346899999999998888999999999999999999999886431 11111
Q ss_pred HhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcccc
Q 003855 720 ESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLDDA 787 (791)
Q Consensus 720 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~~~ 787 (791)
....... ...++..+.+++.+||+.||++||++.|+++.|..+......+.
T Consensus 230 ~~~~~~~-----------------~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~~~~ 280 (284)
T 2a19_B 230 DLRDGII-----------------SDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEKNE 280 (284)
T ss_dssp HHHTTCC-----------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC------
T ss_pred Hhhcccc-----------------cccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCCccc
Confidence 1000000 01234567799999999999999999999999999876655443
No 191
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=3.4e-39 Score=336.43 Aligned_cols=250 Identities=27% Similarity=0.334 Sum_probs=198.1
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 577 (791)
.++|++.+.||+|+||.||+|+.. ++..||+|++.... ....+.+.+|++++++++||||+++++++.+....++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 100 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME 100 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence 468999999999999999999975 78999999987654 2345778899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEe---CCCCcEEEeeeccccc
Q 003855 578 FMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILL---DENMAAHVSDFGISKL 651 (791)
Q Consensus 578 ~~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill---~~~~~~kl~Dfgla~~ 651 (791)
|+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||+++.
T Consensus 101 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH----~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~ 176 (285)
T 3is5_A 101 TCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH----SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAEL 176 (285)
T ss_dssp CCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC
T ss_pred eCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH----hCCEEECCCCHHHEEEecCCCCCCEEEEeeeccee
Confidence 99999999998632 355899999999999999999999 6789999999999999 4568899999999987
Q ss_pred cCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcc
Q 003855 652 LGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVD 731 (791)
Q Consensus 652 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d 731 (791)
..... ......||+.|+|||.+. +.++.++||||||+++|||++|+.||...... ...............
T Consensus 177 ~~~~~---~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~--~~~~~~~~~~~~~~~---- 246 (285)
T 3is5_A 177 FKSDE---HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLE--EVQQKATYKEPNYAV---- 246 (285)
T ss_dssp -------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCCCCCC----
T ss_pred cCCcc---cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHH--HHHhhhccCCccccc----
Confidence 64432 223356899999999875 56899999999999999999999999763211 111111111100000
Q ss_pred hhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 732 ANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
....+++.+.+++.+||+.||++|||+.|+++
T Consensus 247 -----------~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 247 -----------ECRPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp -------------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred -----------ccCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 00013456779999999999999999999975
No 192
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=5.7e-40 Score=353.70 Aligned_cols=250 Identities=26% Similarity=0.295 Sum_probs=193.8
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHH-HHhccCCccceeeeeeccCCeeeE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEV-LRNVRHRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~-l~~l~h~niv~l~~~~~~~~~~~l 574 (791)
.++|++.+.||+|+||.||+|+.+ +++.||||++.... ....+.+..|..+ ++.++||||+++++++.+.+..++
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 468999999999999999999976 68899999997653 2334455666666 567899999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCC
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~ 654 (791)
||||+++|+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 117 v~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH----~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~ 191 (373)
T 2r5t_A 117 VLDYINGGELFYHLQRER-CFLEPRARFYAAEIASALGYLH----SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE 191 (373)
T ss_dssp EEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBC
T ss_pred EEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCceecCCCHHHEEECCCCCEEEeeCcccccccc
Confidence 999999999999998654 3789999999999999999999 67899999999999999999999999999986432
Q ss_pred CCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhh
Q 003855 655 GEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANL 734 (791)
Q Consensus 655 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 734 (791)
.. ......+||+.|+|||++.+..++.++|||||||++|||++|+.||...... ..+........
T Consensus 192 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~-~~~~~i~~~~~------------ 256 (373)
T 2r5t_A 192 HN--STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTA-EMYDNILNKPL------------ 256 (373)
T ss_dssp CC--CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHH-HHHHHHHHSCC------------
T ss_pred CC--CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHH-HHHHHHHhccc------------
Confidence 22 1233457999999999999999999999999999999999999999753211 11111111000
Q ss_pred hhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHH
Q 003855 735 VREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKL 776 (791)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L 776 (791)
..+..++..+.+++.+||+.||++||++.+..+.+
T Consensus 257 -------~~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i 291 (373)
T 2r5t_A 257 -------QLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEI 291 (373)
T ss_dssp -------CCCSSSCHHHHHHHHHHTCSSGGGSTTTTTTHHHH
T ss_pred -------CCCCCCCHHHHHHHHHHcccCHHhCCCCCCCHHHH
Confidence 00112345678999999999999999986444333
No 193
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.6e-39 Score=354.49 Aligned_cols=347 Identities=18% Similarity=0.165 Sum_probs=250.8
Q ss_pred CccCCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCcc
Q 003855 2 AGQIPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHS 81 (791)
Q Consensus 2 ~g~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~ 81 (791)
.+.-+..++++++|++|++++|++++. | .|..+++|++|+|++|+++ .+| +.. +++|++|+|++|.|+++ +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~--~~~-l~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD--LSQ-NTNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC--CTT-CTTCSEEECCSSCCSCC-C--
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc--ccc-CCCCCEEECcCCCCcee-e--
Confidence 355667889999999999999999976 5 7999999999999999998 666 444 89999999999999975 3
Q ss_pred CcCCCCCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChh
Q 003855 82 ITNATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPV 161 (791)
Q Consensus 82 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 161 (791)
|+++++|++|+|++|+++++. ++.+++|+.|++++|+++.++ +..+++|++|++++|+..+.++
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~-----------l~~l~~L~~L~l~~n~~~~~~~-- 165 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID-----------VSHNTQLTELDCHLNKKITKLD-- 165 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC-----------CTTCTTCCEEECTTCSCCCCCC--
T ss_pred cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec-----------cccCCcCCEEECCCCCcccccc--
Confidence 899999999999999999752 899999999999999998753 7789999999999996544432
Q ss_pred hhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCC
Q 003855 162 IGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLM 241 (791)
Q Consensus 162 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 241 (791)
+.. .++|++|++++|++++. | +..+++|+.|++++|++++. .+..+++|++|+|++|++++ +| +..+++|
T Consensus 166 ~~~-l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L 235 (457)
T 3bz5_A 166 VTP-QTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQL 235 (457)
T ss_dssp CTT-CTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTC
T ss_pred ccc-CCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCC
Confidence 333 35688888888888863 3 77888888888888888865 37788888888888888886 45 7788888
Q ss_pred ceEEecCCccCCCCCccccCCC-------CCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCc--------c
Q 003855 242 FGIRLTGNKLSGHIPPCLVSLT-------SLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPS--------N 306 (791)
Q Consensus 242 ~~L~L~~N~i~~~~~~~~~~l~-------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~--------~ 306 (791)
+.|++++|++++..+..+.+++ +|+.|++++|++.+.+| +..+++|+.|++++|...+.+|. .
T Consensus 236 ~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 236 TYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp SEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred CEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 8888888888866544433333 33444444444443333 34566777777777765444432 1
Q ss_pred cccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCc
Q 003855 307 VQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLK 386 (791)
Q Consensus 307 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 386 (791)
+..+++|+.|++++|++++. + ++.+++|+.|++++|+|++ ++.|..|++++|.++|. ..+..|+
T Consensus 314 l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~ 377 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMP 377 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECC
T ss_pred hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecC
Confidence 33445555555555555542 2 5555555555555555553 13344445555555543 2445677
Q ss_pred eEEccCCCCcccCCC
Q 003855 387 QFNVSHNRLEGEIPV 401 (791)
Q Consensus 387 ~l~l~~N~l~~~~~~ 401 (791)
.+++++|+++|.+|.
T Consensus 378 ~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 378 KETLTNNSLTIAVSP 392 (457)
T ss_dssp CBCCBTTBEEEECCT
T ss_pred ccccccCcEEEEcCh
Confidence 777888888877764
No 194
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.4e-39 Score=343.50 Aligned_cols=261 Identities=21% Similarity=0.258 Sum_probs=201.4
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|++.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 478999999999999999999975 78999999987543 23357788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+++++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 113 ~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 187 (309)
T 2h34_A 113 MRLINGVDLAAMLRRQG-PLAPPRAVAIVRQIGSALDAAH----AAGATHRDVKPENILVSADDFAYLVDFGIASATTDE 187 (309)
T ss_dssp EECCCCEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTSCEEECSCCC-------
T ss_pred EEecCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCcCCcCCCChHHEEEcCCCCEEEecCccCcccccc
Confidence 99999999999998654 4899999999999999999999 678999999999999999999999999999876443
Q ss_pred CCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 656 EDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
.. .......|++.|+|||.+.+..++.++||||||+++|||++|+.||...... .....+....+. .
T Consensus 188 ~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~~~~-~--------- 254 (309)
T 2h34_A 188 KL-TQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS--VMGAHINQAIPR-P--------- 254 (309)
T ss_dssp ----------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH--HHHHHHHSCCCC-G---------
T ss_pred cc-ccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH--HHHHHhccCCCC-c---------
Confidence 21 1223356899999999999999999999999999999999999999753211 111111111100 0
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCC-CHHHHHHHHHHHHHHh
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRI-NVTDAAAKLKKIKVKF 783 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RP-t~~ev~~~L~~~~~~~ 783 (791)
......++..+.+++.+||+.||++|| ++.++++.|+++....
T Consensus 255 -----~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~ 298 (309)
T 2h34_A 255 -----STVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATA 298 (309)
T ss_dssp -----GGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC--
T ss_pred -----cccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhh
Confidence 001123456788999999999999999 9999999998875443
No 195
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=5.8e-39 Score=350.27 Aligned_cols=250 Identities=21% Similarity=0.281 Sum_probs=191.9
Q ss_pred hhccccc-cccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHh-ccCCccceeeeeecc----CCee
Q 003855 500 TDEFNEC-NLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRN-VRHRNLIKILSSCSN----PDFK 572 (791)
Q Consensus 500 ~~~~~~~-~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~-l~h~niv~l~~~~~~----~~~~ 572 (791)
.++|.+. +.||+|+||.||+|... +++.||||++... ..+.+|+.++.+ .+||||+++++++.. ....
T Consensus 60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~ 134 (400)
T 1nxk_A 60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 134 (400)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEE
Confidence 3567666 68999999999999975 7899999998643 345667887754 489999999998864 5678
Q ss_pred eEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCC---CCcEEEeeecc
Q 003855 573 ALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDE---NMAAHVSDFGI 648 (791)
Q Consensus 573 ~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~---~~~~kl~Dfgl 648 (791)
++||||+++|+|.+++.... ..+++..+..++.||+.||.||| +.+|+||||||+|||++. ++.+||+|||+
T Consensus 135 ~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~ 210 (400)
T 1nxk_A 135 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH----SINIAHRDVKPENLLYTSKRPNAILKLTDFGF 210 (400)
T ss_dssp EEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEESSSSTTCCEEECCCTT
T ss_pred EEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH----HCCccccCcCcceEEEecCCCCccEEEEeccc
Confidence 99999999999999998653 35899999999999999999999 678999999999999997 78999999999
Q ss_pred ccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcc--hHHHHHHHhcCCCh
Q 003855 649 SKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEM--SLRRWVKESLPHGL 726 (791)
Q Consensus 649 a~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~--~~~~~~~~~~~~~~ 726 (791)
++...... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||........ .....+.......
T Consensus 211 a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~- 286 (400)
T 1nxk_A 211 AKETTSHN---SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEF- 286 (400)
T ss_dssp CEECC--------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCC-
T ss_pred ccccCCCC---ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccC-
Confidence 98764322 22345789999999999999999999999999999999999999976432211 1111111100000
Q ss_pred hhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHH
Q 003855 727 TEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAK 775 (791)
Q Consensus 727 ~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~ 775 (791)
..+....++.++.+++.+||+.||++|||+.|+++.
T Consensus 287 -------------~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 287 -------------PNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp -------------CTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred -------------CCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 000112355678899999999999999999999873
No 196
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=8.1e-40 Score=376.51 Aligned_cols=253 Identities=25% Similarity=0.391 Sum_probs=202.7
Q ss_pred cccCCCcceEEEEEEec---CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEecCCC
Q 003855 507 NLLGTGSFGSVYKGTIS---DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEFMPN 581 (791)
Q Consensus 507 ~~ig~G~~g~Vy~~~~~---~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~ 581 (791)
+.||+|+||.||+|.+. .++.||||+++... ....+.+.+|+.++++++||||+++++++.+ +..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 47999999999999753 46789999997653 2346789999999999999999999999965 457899999999
Q ss_pred CCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCc-ce
Q 003855 582 GSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDS-VT 660 (791)
Q Consensus 582 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~-~~ 660 (791)
|+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+.+...... ..
T Consensus 454 g~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH----~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~ 528 (635)
T 4fl3_A 454 GPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLE----ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKA 528 (635)
T ss_dssp EEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------
T ss_pred CCHHHHHhhCC-CCCHHHHHHHHHHHHHHHHHHH----HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCcccccc
Confidence 99999998654 4899999999999999999999 678999999999999999999999999999877544322 22
Q ss_pred eecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhhHH
Q 003855 661 QTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREEQ 739 (791)
Q Consensus 661 ~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 739 (791)
.....+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+.... .....+....
T Consensus 529 ~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i~~~~----------------- 589 (635)
T 4fl3_A 529 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLEKGE----------------- 589 (635)
T ss_dssp ------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTTC-----------------
T ss_pred ccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCC-----------------
Confidence 333456789999999998899999999999999999998 99999764321 1111111110
Q ss_pred hhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhc
Q 003855 740 AFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFL 784 (791)
Q Consensus 740 ~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~ 784 (791)
....+..++.++.++|.+||+.||++||++.++++.|+.+..+..
T Consensus 590 ~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~l~ 634 (635)
T 4fl3_A 590 RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVV 634 (635)
T ss_dssp CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHhc
Confidence 001122456778999999999999999999999999999876653
No 197
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=5.9e-40 Score=343.56 Aligned_cols=260 Identities=25% Similarity=0.396 Sum_probs=200.4
Q ss_pred hhccccccccCCCcceEEEEEEec--CCc--EEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS--DGT--DVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFK 572 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~--~~~--~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 572 (791)
.++|++.+.||+|+||.||+|++. +++ .||||++.... ....+.+.+|+.++++++||||+++++++.++. .
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 368999999999999999999863 333 68999886542 345678899999999999999999999998765 7
Q ss_pred eEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccccc
Q 003855 573 ALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLL 652 (791)
Q Consensus 573 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~ 652 (791)
++||||+++|+|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 96 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~ 171 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE----SKRFIHRDLAARNLLLATRDLVKIGDFGLMRAL 171 (291)
T ss_dssp EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred eeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHH----hCCcccCCCchheEEEcCCCCEEEccccccccc
Confidence 8999999999999999876566899999999999999999999 678999999999999999999999999999887
Q ss_pred CCCCCcc-eeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhc
Q 003855 653 GEGEDSV-TQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVV 730 (791)
Q Consensus 653 ~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (791)
....... ......++..|+|||.+.+..++.++||||||+++|||++ |+.||...... .....+. ....
T Consensus 172 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~~~---~~~~---- 242 (291)
T 1u46_A 172 PQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS--QILHKID---KEGE---- 242 (291)
T ss_dssp CC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHH---TSCC----
T ss_pred cccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHH--HHHHHHH---ccCC----
Confidence 5543322 2233457889999999988889999999999999999999 99999753211 1111111 1000
Q ss_pred chhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 731 DANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 731 d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
..+....++..+.+++.+||+.||++||++.++++.|+++...
T Consensus 243 ---------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 243 ---------RLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp ---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred ---------CCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence 0011123556788999999999999999999999999988654
No 198
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=5.6e-40 Score=341.22 Aligned_cols=253 Identities=28% Similarity=0.425 Sum_probs=201.0
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccC-CeeeEEEec
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNP-DFKALVLEF 578 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-~~~~lv~e~ 578 (791)
.++|++.+.||+|+||.||+|+. +|+.||||++.... ..+.+.+|+.++++++||||+++++++.+. +..++||||
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~ 96 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence 46899999999999999999988 48899999987543 346788999999999999999999987544 578999999
Q ss_pred CCCCCHHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCC
Q 003855 579 MPNGSLEKWLYSHNY-FLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGED 657 (791)
Q Consensus 579 ~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~ 657 (791)
+++|+|.+++..... .+++..+..++.|++.||+||| +.+++||||||+||+++.++.+||+|||+++......
T Consensus 97 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~- 171 (278)
T 1byg_A 97 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE----GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ- 171 (278)
T ss_dssp CTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECTTSCEEECCCCC---------
T ss_pred CCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH----hCCccccCCCcceEEEeCCCcEEEeeccccccccccc-
Confidence 999999999985432 3788999999999999999999 6789999999999999999999999999998654321
Q ss_pred cceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhh
Q 003855 658 SVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVR 736 (791)
Q Consensus 658 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 736 (791)
....++..|+|||.+.+..++.++||||||+++|||+| |+.||...... .....+.....
T Consensus 172 ----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~--~~~~~~~~~~~------------- 232 (278)
T 1byg_A 172 ----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DVVPRVEKGYK------------- 232 (278)
T ss_dssp --------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG--GHHHHHTTTCC-------------
T ss_pred ----cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHhcCCC-------------
Confidence 22357889999999988889999999999999999998 99998753221 11111111000
Q ss_pred hHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHh
Q 003855 737 EEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKF 783 (791)
Q Consensus 737 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~ 783 (791)
...+..++..+.+++.+||+.||++||++.|+++.|++++...
T Consensus 233 ----~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~~ 275 (278)
T 1byg_A 233 ----MDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTHE 275 (278)
T ss_dssp ----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred ----CCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhhh
Confidence 0111235567889999999999999999999999999997654
No 199
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=4.2e-39 Score=357.75 Aligned_cols=261 Identities=22% Similarity=0.228 Sum_probs=195.7
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehh--hhHHHHHHHHHHHHHHhccCCccceeeeeeccC------C
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQ--LERAFRSFDSECEVLRNVRHRNLIKILSSCSNP------D 570 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~ 570 (791)
.++|++.+.||+|+||.||+|+.. +++.||||++... .....+.+.+|+.+++.++||||+++++++... .
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 478999999999999999999865 7899999999754 234456788999999999999999999998654 4
Q ss_pred eeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 571 FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 571 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
..++||||+++ ++.+.+.. .+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+|+
T Consensus 141 ~~~lv~E~~~~-~l~~~~~~---~l~~~~~~~~~~qil~aL~~lH----~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~ 212 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH----SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 212 (464)
T ss_dssp EEEEEEECCSE-EHHHHHTS---CCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTSCEEECCCCCC-
T ss_pred eEEEEEeCCCC-CHHHHHhh---cCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCChHhEEEeCCCCEEEEEEEeee
Confidence 57999999975 57777754 2889999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC-----
Q 003855 651 LLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG----- 725 (791)
Q Consensus 651 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~----- 725 (791)
...... .....+||++|+|||++.+..|+.++||||+||++|||++|+.||.+.... ..+...+.......
T Consensus 213 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~-~~~~~i~~~lg~p~~~~~~ 288 (464)
T 3ttj_A 213 TAGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYI-DQWNKVIEQLGTPCPEFMK 288 (464)
T ss_dssp ----CC---CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCSCCHHHHT
T ss_pred ecCCCc---ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHhcCCCCHHHHH
Confidence 764322 233457999999999999999999999999999999999999999763211 11111111110000
Q ss_pred --------------------hhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 726 --------------------LTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 726 --------------------~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
........+... ........+.++.+++.+||+.||++|||+.|+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 355 (464)
T 3ttj_A 289 KLQPTVRNYVENRPKYAGLTFPKLFPDSLFPA--DSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 355 (464)
T ss_dssp TSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCC--SSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HcchhhhhHhhcccccCCCChHHhCccccccc--ccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 000000000000 00111223567899999999999999999999986
No 200
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=1.2e-39 Score=347.17 Aligned_cols=257 Identities=30% Similarity=0.478 Sum_probs=205.6
Q ss_pred hccccccccCCCcceEEEEEEec-CCcE--EEEEEeehhh-hHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCeeeEE
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS-DGTD--VAIKIFNLQL-ERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~--vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv 575 (791)
++|++.+.||+|+||.||+|+.. ++.. ||||.+.... ....+.+.+|+++++++ +||||+++++++.+.+..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 68999999999999999999865 5664 4999886532 33456788999999999 899999999999999999999
Q ss_pred EecCCCCCHHHHHhhCC---------------CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCc
Q 003855 576 LEFMPNGSLEKWLYSHN---------------YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMA 640 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~ 640 (791)
|||+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||+++.++.
T Consensus 105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~dlkp~NIl~~~~~~ 180 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS----QKQFIHRDLAARNILVGENYV 180 (327)
T ss_dssp ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECGGGC
T ss_pred EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH----hCCccCCCCccceEEEcCCCe
Confidence 99999999999998653 35899999999999999999999 678999999999999999999
Q ss_pred EEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHH
Q 003855 641 AHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVK 719 (791)
Q Consensus 641 ~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~ 719 (791)
+||+|||+++..... .......+++.|+|||.+.+..++.++||||||+++|||+| |+.||...... ....
T Consensus 181 ~kL~Dfg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~-----~~~~ 252 (327)
T 1fvr_A 181 AKIADFGLSRGQEVY---VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA-----ELYE 252 (327)
T ss_dssp EEECCTTCEESSCEE---CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-----HHHH
T ss_pred EEEcccCcCcccccc---ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHH-----HHHH
Confidence 999999999753221 12223356889999999988889999999999999999998 99999753211 1111
Q ss_pred HhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHh
Q 003855 720 ESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKF 783 (791)
Q Consensus 720 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~ 783 (791)
.. .... ....+..++..+.+++.+||+.||++||++.|+++.|.++....
T Consensus 253 ~~-~~~~-------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 302 (327)
T 1fvr_A 253 KL-PQGY-------------RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEER 302 (327)
T ss_dssp HG-GGTC-------------CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred Hh-hcCC-------------CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhh
Confidence 11 0000 00111234567889999999999999999999999999987654
No 201
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=8.3e-39 Score=345.28 Aligned_cols=262 Identities=23% Similarity=0.279 Sum_probs=195.3
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccC------C
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNP------D 570 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~ 570 (791)
.++|+..+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.++++++||||+++++++... .
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 467999999999999999999974 79999999985432 34456788999999999999999999998765 3
Q ss_pred eeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 571 FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 571 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
..++||||+ +++|.+++... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+|+
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~~~~qi~~~L~~LH----~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 176 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHE--KLGEDRIQFLVYQMLKGLRYIH----AAGIIHRDLKPGNLAVNEDCELKILDFGLAR 176 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred eEEEEEecC-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH----HCCccccCcCHHHEEEcCCCCEEEEeeeccc
Confidence 459999999 88999999874 3899999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCcceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCC--Chh
Q 003855 651 LLGEGEDSVTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPH--GLT 727 (791)
Q Consensus 651 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~--~~~ 727 (791)
..... ....++|++|+|||++.+ ..++.++||||+||++|||++|+.||.+.... ..+...+...... ...
T Consensus 177 ~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~l~~i~~~~g~~~~~~~ 250 (367)
T 1cm8_A 177 QADSE-----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHL-DQLKEIMKVTGTPPAEFV 250 (367)
T ss_dssp ECCSS-----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCHHHH
T ss_pred ccccc-----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHhcCCCCHHHH
Confidence 75432 233568999999998766 77999999999999999999999999753221 1111111111100 000
Q ss_pred hhcchhhhhhH-H--------h-hHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 728 EVVDANLVREE-Q--------A-FSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 728 ~~~d~~~~~~~-~--------~-~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+........ . . ......++..+.+++.+||+.||++|||+.|+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 251 QRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 307 (367)
T ss_dssp HTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence 00000000000 0 0 0001234567889999999999999999999987
No 202
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=6.6e-39 Score=337.71 Aligned_cols=251 Identities=25% Similarity=0.317 Sum_probs=202.8
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEe
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 577 (791)
..++|++.+.||+|+||.||+|+.. +|+.||+|++........+.+.+|+.++++++||||+++++++.+....++|||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 86 (304)
T 2jam_A 7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQ 86 (304)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEE
Confidence 3478999999999999999999975 789999999976554445678899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEe---CCCCcEEEeeeccccccCC
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILL---DENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill---~~~~~~kl~Dfgla~~~~~ 654 (791)
|+++|+|.+++...+ .+++..+..++.|++.||.||| +.+|+||||||+||++ +.++.+||+|||+++....
T Consensus 87 ~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~ 161 (304)
T 2jam_A 87 LVSGGELFDRILERG-VYTEKDASLVIQQVLSAVKYLH----ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQN 161 (304)
T ss_dssp CCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH----HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCC
T ss_pred cCCCccHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCC
Confidence 999999999997654 3899999999999999999999 6789999999999999 7889999999999976433
Q ss_pred CCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhh
Q 003855 655 GEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANL 734 (791)
Q Consensus 655 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 734 (791)
. ......|++.|+|||.+.+..++.++||||+|+++|||++|+.||..... ......+........
T Consensus 162 ~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~i~~~~~~~~-------- 227 (304)
T 2jam_A 162 G----IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETE--SKLFEKIKEGYYEFE-------- 227 (304)
T ss_dssp B----TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHCCCCCC--------
T ss_pred C----ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHcCCCCCC--------
Confidence 2 12234689999999999999999999999999999999999999975321 111111111100000
Q ss_pred hhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 735 VREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.+....++..+.+++.+|++.||++||++.|+++
T Consensus 228 ------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 228 ------SPFWDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp ------TTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred ------ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0011234567889999999999999999999986
No 203
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=3.7e-39 Score=354.33 Aligned_cols=253 Identities=26% Similarity=0.324 Sum_probs=194.7
Q ss_pred HHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--------hHHHHHHHHHHHHHHhccCCccceeeeeecc
Q 003855 498 RATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--------ERAFRSFDSECEVLRNVRHRNLIKILSSCSN 568 (791)
Q Consensus 498 ~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~ 568 (791)
...++|.+.+.||+|+||.||+|... +++.||||++.... ......+.+|+.++++++||||+++++++..
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 211 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 211 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence 45688999999999999999999865 68999999987542 1122357889999999999999999999854
Q ss_pred CCeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCC---CcEEEee
Q 003855 569 PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDEN---MAAHVSD 645 (791)
Q Consensus 569 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~---~~~kl~D 645 (791)
+..++||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+|||++.+ +.+||+|
T Consensus 212 -~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH----~~~ivHrDlkp~NIll~~~~~~~~~kl~D 285 (419)
T 3i6u_A 212 -EDYYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLH----ENGIIHRDLKPENVLLSSQEEDCLIKITD 285 (419)
T ss_dssp -SEEEEEEECCTTCBGGGGTSSSC-CCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEESSSSSSCCEEECC
T ss_pred -CceEEEEEcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH----HCCccccCCChHhEEEecCCCcceEEEee
Confidence 45789999999999999887654 4899999999999999999999 6789999999999999754 4599999
Q ss_pred eccccccCCCCCcceeecccccccccCCCccC---CCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhc
Q 003855 646 FGISKLLGEGEDSVTQTMTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESL 722 (791)
Q Consensus 646 fgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~---~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 722 (791)
||+|+...... .....+||+.|+|||++. ...++.++|||||||++|||++|+.||....... .+...+....
T Consensus 286 FG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~-~~~~~i~~~~ 361 (419)
T 3i6u_A 286 FGHSKILGETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQV-SLKDQITSGK 361 (419)
T ss_dssp SSTTTSCC--------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSC-CHHHHHHTTC
T ss_pred cccceecCCCc---cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchH-HHHHHHhcCC
Confidence 99998765322 223356899999999875 3678899999999999999999999997643222 2222222111
Q ss_pred CCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 723 PHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 723 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.... ......++..+.+++.+||+.||++||++.|+++
T Consensus 362 ~~~~--------------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 362 YNFI--------------PEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp CCCC--------------HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCC--------------chhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 1100 0111235567889999999999999999999986
No 204
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=1.2e-38 Score=333.42 Aligned_cols=247 Identities=23% Similarity=0.345 Sum_probs=197.9
Q ss_pred hccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeecc----CCeee
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSN----PDFKA 573 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~ 573 (791)
..|++.+.||+|+||.||+|... ++..||+|++.... ....+.+.+|+.++++++||||+++++++.. ....+
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 35788889999999999999875 78899999987543 4456778999999999999999999998754 45689
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCC--eEecCCCCCCeEeC-CCCcEEEeeecccc
Q 003855 574 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAP--IIHCDLKPTNILLD-ENMAAHVSDFGISK 650 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~--i~H~dlk~~Nill~-~~~~~kl~Dfgla~ 650 (791)
+||||+++|+|.+++.... .+++..+..++.|++.||.||| +.+ |+||||||+||+++ +++.+||+|||+++
T Consensus 106 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH----~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~ 180 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLH----TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT 180 (290)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----TSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred EEEEecCCCCHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHHH----cCCCCEEECCCCHHHEEEECCCCCEEEeeCCCcc
Confidence 9999999999999998653 3899999999999999999999 566 99999999999998 88999999999997
Q ss_pred ccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhc
Q 003855 651 LLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVV 730 (791)
Q Consensus 651 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (791)
...... .....||+.|+|||.+. +.++.++||||+|+++|||++|+.||....... .............
T Consensus 181 ~~~~~~----~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~----~~~~~~~~~~~~~-- 249 (290)
T 1t4h_A 181 LKRASF----AKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAA----QIYRRVTSGVKPA-- 249 (290)
T ss_dssp GCCTTS----BEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH----HHHHHHTTTCCCG--
T ss_pred cccccc----cccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHH----HHHHHHhccCCcc--
Confidence 654322 22346899999999876 458999999999999999999999997532221 1111111110000
Q ss_pred chhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 731 DANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 731 d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.....++..+.+++.+||+.||++|||+.|+++
T Consensus 250 -----------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 250 -----------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp -----------GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred -----------ccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 011123356889999999999999999999985
No 205
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=1.7e-38 Score=342.79 Aligned_cols=257 Identities=27% Similarity=0.376 Sum_probs=207.2
Q ss_pred hHHHHHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--------hHHHHHHHHHHHHHHhc-cCCccceee
Q 003855 494 LDIQRATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--------ERAFRSFDSECEVLRNV-RHRNLIKIL 563 (791)
Q Consensus 494 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l-~h~niv~l~ 563 (791)
.......++|++.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.+++++ +||||++++
T Consensus 87 ~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 166 (365)
T 2y7j_A 87 AAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLI 166 (365)
T ss_dssp HHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEE
T ss_pred hhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEE
Confidence 334555678999999999999999999985 79999999986542 22356788999999999 799999999
Q ss_pred eeeccCCeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEE
Q 003855 564 SSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHV 643 (791)
Q Consensus 564 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl 643 (791)
+++......++||||+++|+|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+||+++.++.+||
T Consensus 167 ~~~~~~~~~~lv~e~~~g~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH----~~gi~H~Dlkp~NIl~~~~~~ikl 241 (365)
T 2y7j_A 167 DSYESSSFMFLVFDLMRKGELFDYLTEKV-ALSEKETRSIMRSLLEAVSFLH----ANNIVHRDLKPENILLDDNMQIRL 241 (365)
T ss_dssp EEEEBSSEEEEEECCCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTCCEEE
T ss_pred EEEeeCCEEEEEEEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----hCCeecCCCCHHHEEECCCCCEEE
Confidence 99999999999999999999999998643 4899999999999999999999 678999999999999999999999
Q ss_pred eeeccccccCCCCCcceeecccccccccCCCccC------CCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHH
Q 003855 644 SDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGS------EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRW 717 (791)
Q Consensus 644 ~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~------~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~ 717 (791)
+|||++..+..... .....||+.|+|||++. ...++.++|||||||++|||++|+.||..... ......
T Consensus 242 ~DfG~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~--~~~~~~ 316 (365)
T 2y7j_A 242 SDFGFSCHLEPGEK---LRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQ--ILMLRM 316 (365)
T ss_dssp CCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHH
T ss_pred EecCcccccCCCcc---cccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCH--HHHHHH
Confidence 99999987754332 23357899999999864 34688999999999999999999999965221 111111
Q ss_pred HHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 718 VKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 718 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
+....... ..+....++..+.+++.+||+.||++|||+.|+++
T Consensus 317 i~~~~~~~--------------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 317 IMEGQYQF--------------SSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp HHHTCCCC--------------CHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHhCCCCC--------------CCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 11100000 00111234567889999999999999999999986
No 206
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=3.2e-40 Score=358.42 Aligned_cols=248 Identities=15% Similarity=0.199 Sum_probs=193.7
Q ss_pred hhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehh---hhHHHHHHHHHH---HHHHhccCCccceee-------ee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQ---LERAFRSFDSEC---EVLRNVRHRNLIKIL-------SS 565 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~e~---~~l~~l~h~niv~l~-------~~ 565 (791)
.++|++.+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|+ +.+++++||||++++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 46799999999999999999996 47999999998743 334567888999 455556899999998 55
Q ss_pred eccCC-----------------eeeEEEecCCCCCHHHHHhhCCC------CCCHHHHHHHHHHHHHHHHHHHccCCCCC
Q 003855 566 CSNPD-----------------FKALVLEFMPNGSLEKWLYSHNY------FLDILERLNIMIDVGSALEYLHHGHSSAP 622 (791)
Q Consensus 566 ~~~~~-----------------~~~lv~e~~~~g~L~~~l~~~~~------~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ 622 (791)
+.+++ ..++||||+ +|+|.+++..... .+++..+..++.||+.||+||| +.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~ 226 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH----HYG 226 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH----HTT
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH----hCC
Confidence 54443 278999999 6899999985422 2336888899999999999999 678
Q ss_pred eEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCC-----------CCCccccHHhHH
Q 003855 623 IIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEG-----------IVSAKCDVYSYG 691 (791)
Q Consensus 623 i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-----------~~~~~~Dv~s~G 691 (791)
|+||||||+|||++.++.+||+|||+|+.... ......| +.|+|||++.+. .++.++||||||
T Consensus 227 ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG 300 (377)
T 3byv_A 227 LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALG 300 (377)
T ss_dssp EECSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHH
T ss_pred eecCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHH
Confidence 99999999999999999999999999986422 2334567 999999998877 899999999999
Q ss_pred HHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHH
Q 003855 692 VLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTD 771 (791)
Q Consensus 692 ~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~e 771 (791)
|++|||++|+.||........ ...+.. ....++..+.+++.+||+.||++||++.|
T Consensus 301 ~il~elltg~~Pf~~~~~~~~-------------~~~~~~-----------~~~~~~~~~~~li~~~L~~dp~~Rpt~~e 356 (377)
T 3byv_A 301 LVIYWIWCADLPITKDAALGG-------------SEWIFR-----------SCKNIPQPVRALLEGFLRYPKEDRLLPLQ 356 (377)
T ss_dssp HHHHHHHHSSCCC------CC-------------SGGGGS-----------SCCCCCHHHHHHHHHHTCSSGGGCCCHHH
T ss_pred HHHHHHHHCCCCCcccccccc-------------hhhhhh-----------hccCCCHHHHHHHHHHcCCCchhCCCHHH
Confidence 999999999999965322110 000000 00134567889999999999999999999
Q ss_pred HHH--HHHHHHHH
Q 003855 772 AAA--KLKKIKVK 782 (791)
Q Consensus 772 v~~--~L~~~~~~ 782 (791)
+++ .+.+++..
T Consensus 357 ~l~hp~f~~~~~~ 369 (377)
T 3byv_A 357 AMETPEYEQLRTE 369 (377)
T ss_dssp HHTSHHHHHHHHH
T ss_pred HhhChHHHHHHHH
Confidence 986 56665544
No 207
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=9.9e-39 Score=352.62 Aligned_cols=200 Identities=26% Similarity=0.358 Sum_probs=167.7
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccC-----Ce
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNP-----DF 571 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~ 571 (791)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.++++++||||+++++++... ..
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 478999999999999999999975 68899999996532 34456788999999999999999999998765 57
Q ss_pred eeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccc
Q 003855 572 KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKL 651 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~ 651 (791)
.++||||++ |+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+.
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~~-~l~~~~~~~i~~qil~aL~~LH----~~givHrDlkp~NILl~~~~~~kL~DFGla~~ 178 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTPI-FLTEEHIKTILYNLLLGENFIH----ESGIIHRDLKPANCLLNQDCSVKVCDFGLART 178 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSSC-CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEEecCC-cCHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH----HCCCCCCCCCHHHeEECCCCCEEEccCCCccc
Confidence 899999996 69999998654 4899999999999999999999 67899999999999999999999999999987
Q ss_pred cCCCCCc--------------------ceeecccccccccCCCcc-CCCCCCccccHHhHHHHHHHHHhCCCCCC
Q 003855 652 LGEGEDS--------------------VTQTMTMATIGYMAPEYG-SEGIVSAKCDVYSYGVLLMETFTRKRPTD 705 (791)
Q Consensus 652 ~~~~~~~--------------------~~~~~~~g~~~y~aPE~~-~~~~~~~~~Dv~s~G~vl~elltg~~p~~ 705 (791)
....... ......+||++|+|||++ ....++.++||||+||++|||++|..||.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~ 253 (432)
T 3n9x_A 179 INSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI 253 (432)
T ss_dssp C-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred ccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence 6543221 123456799999999975 56679999999999999999998665553
No 208
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=2.3e-39 Score=345.70 Aligned_cols=251 Identities=23% Similarity=0.312 Sum_probs=199.5
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCeeeEEE
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 576 (791)
..++|++.+.||+|+||.||+|+.+ +++.||||++..... ...+|++++.++ +||||+++++++.++...++||
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ 95 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT 95 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence 4578999999999999999999975 789999999976543 234578888887 7999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCC----CcEEEeeecccccc
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDEN----MAAHVSDFGISKLL 652 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~----~~~kl~Dfgla~~~ 652 (791)
||+++|+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+||++.++ +.+||+|||+++..
T Consensus 96 E~~~gg~L~~~i~~~~-~~~~~~~~~~~~qi~~al~~lH----~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~ 170 (342)
T 2qr7_A 96 ELMKGGELLDKILRQK-FFSEREASAVLFTITKTVEYLH----AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQL 170 (342)
T ss_dssp CCCCSCBHHHHHHTCT-TCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEEC
T ss_pred eCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccC
Confidence 9999999999998654 4899999999999999999999 6789999999999998543 35999999999876
Q ss_pred CCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccC-cchHHHHHHHhcCCChhhhcc
Q 003855 653 GEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTG-EMSLRRWVKESLPHGLTEVVD 731 (791)
Q Consensus 653 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~d 731 (791)
..... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||...... ...+...+...... ..
T Consensus 171 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~-~~---- 243 (342)
T 2qr7_A 171 RAENG--LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFS-LS---- 243 (342)
T ss_dssp BCTTC--CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCC-CC----
T ss_pred cCCCC--ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcc-cC----
Confidence 44322 223457899999999988878999999999999999999999999753211 11111111110000 00
Q ss_pred hhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 732 ANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
...+..++.++.+++.+||+.||++||++.|+++
T Consensus 244 ---------~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 244 ---------GGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp ---------STTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred ---------ccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0001234567889999999999999999999876
No 209
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=3.4e-39 Score=338.20 Aligned_cols=249 Identities=22% Similarity=0.290 Sum_probs=205.6
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|.+.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 468999999999999999999976 68899999987543 34556788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+++++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 94 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 168 (294)
T 2rku_A 94 LELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLH----RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 168 (294)
T ss_dssp EECCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred EecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCccccCCChHhEEEcCCCCEEEEeccCceecccC
Confidence 99999999999987654 4899999999999999999999 678999999999999999999999999999876433
Q ss_pred CCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 656 EDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
.. ......|++.|+|||.+.+..++.++||||||+++|||++|+.||......+ ..... . ...
T Consensus 169 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-~~~~~-~---~~~---------- 231 (294)
T 2rku_A 169 GE--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE-TYLRI-K---KNE---------- 231 (294)
T ss_dssp TC--CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHH-H---TTC----------
T ss_pred cc--ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHH-h---hcc----------
Confidence 22 2233568999999999988889999999999999999999999997532211 11110 0 000
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHH
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAK 775 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~ 775 (791)
...+..++..+.+++.+||+.||++|||+.|+++.
T Consensus 232 -----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 232 -----YSIPKHINPVAASLIQKMLQTDPTARPTINELLND 266 (294)
T ss_dssp -----CCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred -----CCCccccCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 00011234567899999999999999999999873
No 210
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=5.2e-39 Score=334.98 Aligned_cols=246 Identities=25% Similarity=0.330 Sum_probs=204.0
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 92 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM 92 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence 368999999999999999999975 67899999987543 22346788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+++|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 93 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~ 167 (284)
T 2vgo_A 93 LEFAPRGELYKELQKHG-RFDEQRSATFMEELADALHYCH----ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL 167 (284)
T ss_dssp ECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----TTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSS
T ss_pred EEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCceecCCCHHHEEEcCCCCEEEecccccccCccc
Confidence 99999999999998654 3899999999999999999999 779999999999999999999999999999765432
Q ss_pred CCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 656 EDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
. .....|++.|+|||.+.+..++.++||||||+++|||++|+.||...... .....+.. ...
T Consensus 168 ~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~---~~~--------- 229 (284)
T 2vgo_A 168 R----RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHT--ETHRRIVN---VDL--------- 229 (284)
T ss_dssp C----BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHT---TCC---------
T ss_pred c----cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHh--HHHHHHhc---ccc---------
Confidence 1 22346899999999999999999999999999999999999999753211 11111110 000
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+..++..+.+++.+|++.||++||++.|+++
T Consensus 230 ------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 230 ------KFPPFLSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp ------CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ------CCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 001123466789999999999999999999986
No 211
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=8e-39 Score=358.30 Aligned_cols=248 Identities=23% Similarity=0.314 Sum_probs=203.1
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|+..+.||+|+||.||+|+.. +|+.||+|++.... ....+.+..|+.++++++||||+++++++.+....++|
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 368999999999999999999975 79999999997653 23456788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccccc
Q 003855 576 LEFMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLL 652 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~ 652 (791)
|||++||+|.+++... ...+++..+..++.||+.||.||| +.+|+||||||+||+++.+|.+||+|||+++.+
T Consensus 264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH----~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~ 339 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH----QRNIIYRDLKPENVLLDDDGNVRISDLGLAVEL 339 (543)
T ss_dssp ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH----HcCCcccCCChHHEEEeCCCCEEEeecceeeec
Confidence 9999999999999854 335899999999999999999999 678999999999999999999999999999876
Q ss_pred CCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcch
Q 003855 653 GEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDA 732 (791)
Q Consensus 653 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 732 (791)
..... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||....... .............
T Consensus 340 ~~~~~--~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~-~~~~~~~~i~~~~------- 409 (543)
T 3c4z_A 340 KAGQT--KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV-ENKELKQRVLEQA------- 409 (543)
T ss_dssp CTTCC--CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCC-CHHHHHHHHHHCC-------
T ss_pred cCCCc--ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccch-hHHHHHHHHhhcc-------
Confidence 54332 1233479999999999999999999999999999999999999997643211 1111111100000
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCH
Q 003855 733 NLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINV 769 (791)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~ 769 (791)
...+..++..+.+++.+||+.||++||++
T Consensus 410 --------~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 438 (543)
T 3c4z_A 410 --------VTYPDKFSPASKDFCEALLQKDPEKRLGF 438 (543)
T ss_dssp --------CCCCTTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred --------cCCCcccCHHHHHHHHHhccCCHhHCCCC
Confidence 00112345677899999999999999975
No 212
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=1e-38 Score=354.39 Aligned_cols=262 Identities=19% Similarity=0.245 Sum_probs=209.6
Q ss_pred hhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccC-CccceeeeeeccCCeeeEEEe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRH-RNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~l~~~~~~~~~~~lv~e 577 (791)
.++|++.+.||+|+||.||+|+. .+++.||||++...... +.+..|+++++.++| +++..+..++.+.+..++|||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~--~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH--PQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS--CCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc--HHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 46899999999999999999996 47899999987654322 357789999999977 555566666677888899999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEe---CCCCcEEEeeeccccccCC
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILL---DENMAAHVSDFGISKLLGE 654 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill---~~~~~~kl~Dfgla~~~~~ 654 (791)
|+ +++|.+++......+++..+..++.||+.||+||| +.+|+||||||+|||+ +.++.+||+|||+|+.+..
T Consensus 84 ~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH----~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~ 158 (483)
T 3sv0_A 84 LL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVH----SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRD 158 (483)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred CC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH----HCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccC
Confidence 99 99999999876667999999999999999999999 6789999999999999 6889999999999987755
Q ss_pred CCCc-----ceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcch--HHHHHHHhcCCChh
Q 003855 655 GEDS-----VTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMS--LRRWVKESLPHGLT 727 (791)
Q Consensus 655 ~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~--~~~~~~~~~~~~~~ 727 (791)
.... .......||..|+|||++.+..++.++|||||||++|||++|+.||......... +......
T Consensus 159 ~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~------- 231 (483)
T 3sv0_A 159 TSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEK------- 231 (483)
T ss_dssp TTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHH-------
T ss_pred CccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhc-------
Confidence 4322 1122457999999999999999999999999999999999999999874332211 1111110
Q ss_pred hhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 728 EVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 728 ~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
..... .......++.++.+++..||+.+|++||++.++++.|+.+...
T Consensus 232 -----~~~~~--~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~ 279 (483)
T 3sv0_A 232 -----KVATS--IEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIR 279 (483)
T ss_dssp -----HHHSC--HHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred -----ccccc--HHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHH
Confidence 00000 0011124567899999999999999999999999999998654
No 213
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=1.4e-39 Score=351.63 Aligned_cols=264 Identities=23% Similarity=0.309 Sum_probs=204.8
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 577 (791)
.++|++.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 111 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 111 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence 368999999999999999999976 78999999987653 3445778999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCC
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGED 657 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~ 657 (791)
|+++|+|.+++..... +++..+..++.|++.||+|||+ ..+|+||||||+||+++.++.+||+|||+++.....
T Consensus 112 ~~~~~~L~~~l~~~~~-~~~~~~~~i~~~i~~~l~~lh~---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-- 185 (360)
T 3eqc_A 112 HMDGGSLDQVLKKAGR-IPEQILGKVSIAVIKGLTYLRE---KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-- 185 (360)
T ss_dssp CCTTCBHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHHH---HHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH--
T ss_pred CCCCCCHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHH---hCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc--
Confidence 9999999999986543 8999999999999999999993 137999999999999999999999999999755321
Q ss_pred cceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHh----------------
Q 003855 658 SVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKES---------------- 721 (791)
Q Consensus 658 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~---------------- 721 (791)
......||+.|+|||++.+..++.++|||||||++|||++|+.||......+. ...+...
T Consensus 186 --~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 261 (360)
T 3eqc_A 186 --MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKEL--ELMFGCQVEGDAAETPPRPRTPG 261 (360)
T ss_dssp --C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHH--HHHHC------------------
T ss_pred --cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH--HHHhcccccccCCCCCCCcccCC
Confidence 12234689999999999999999999999999999999999999975322111 1000000
Q ss_pred -----------cCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 722 -----------LPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 722 -----------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
......+..+....... .......++.++.+++.+||+.||++|||+.|+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 324 (360)
T 3eqc_A 262 RPLNKFGMDSRPPMAIFELLDYIVNEPP-PKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV 324 (360)
T ss_dssp ------------CCCHHHHHHHHHHSCC-CCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred CcccccccCCCCcccchhhhhHHhccCC-CCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence 00000111111000000 00011124567899999999999999999999986
No 214
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=1.3e-39 Score=342.85 Aligned_cols=252 Identities=23% Similarity=0.316 Sum_probs=200.7
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEec
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEF 578 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 578 (791)
.++|++.+.||+|+||.||+|+.. +++.||+|++........+.+.+|+.++++++||||+++++++.+.+..++||||
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 97 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEF 97 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEEC
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEe
Confidence 468999999999999999999976 6899999998776656677889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCc
Q 003855 579 MPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDS 658 (791)
Q Consensus 579 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~ 658 (791)
+++|+|.+++......+++..+..++.|++.||.||| +.+++||||||+||+++.++.+||+|||++...... .
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~ 171 (302)
T 2j7t_A 98 CPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLH----SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT--L 171 (302)
T ss_dssp CTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH--H
T ss_pred CCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh----cCCcccCCCCHHHEEECCCCCEEEEECCCCcccccc--c
Confidence 9999999999876566999999999999999999999 678999999999999999999999999998543211 1
Q ss_pred ceeecccccccccCCCcc-----CCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchh
Q 003855 659 VTQTMTMATIGYMAPEYG-----SEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDAN 733 (791)
Q Consensus 659 ~~~~~~~g~~~y~aPE~~-----~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 733 (791)
.......|++.|+|||++ .+..++.++||||||+++|||++|+.||....... ..........+..
T Consensus 172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~~~~~~~-------- 242 (302)
T 2j7t_A 172 QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR-VLLKIAKSDPPTL-------- 242 (302)
T ss_dssp HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHSCCCCC--------
T ss_pred cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHH-HHHHHhccCCccc--------
Confidence 112234689999999987 46778999999999999999999999997632211 1111111111000
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 734 LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+..++..+.+++.+||+.||++|||+.|+++
T Consensus 243 --------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 243 --------LTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp --------SSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred --------CCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 011234567889999999999999999999975
No 215
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=3.7e-39 Score=344.28 Aligned_cols=248 Identities=22% Similarity=0.283 Sum_probs=205.2
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|.+.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 468999999999999999999975 68899999987553 34556788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+++++|.+++.... .+++.++..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 120 ~e~~~~~~L~~~~~~~~-~l~~~~~~~i~~qi~~aL~~LH----~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 194 (335)
T 2owb_A 120 LELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLH----RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 194 (335)
T ss_dssp ECCCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred EecCCCCCHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH----HCCCEecCCCchhEEEcCCCCEEEeeccCceecccC
Confidence 99999999999987654 4899999999999999999999 678999999999999999999999999999876433
Q ss_pred CCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 656 EDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
.. ......|+..|+|||++.+..++.++||||||+++|||++|+.||......+ ..........
T Consensus 195 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~------------- 258 (335)
T 2owb_A 195 GE--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE-TYLRIKKNEY------------- 258 (335)
T ss_dssp TC--CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHHTCC-------------
T ss_pred cc--cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHH-HHHHHhcCCC-------------
Confidence 22 2233568999999999988889999999999999999999999997532111 1111111000
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+..++..+.+++.+||+.||++||++.|+++
T Consensus 259 ------~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 259 ------SIPKHINPVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp ------CCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ------CCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 001123456789999999999999999999986
No 216
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=6.6e-39 Score=335.39 Aligned_cols=250 Identities=24% Similarity=0.281 Sum_probs=189.2
Q ss_pred hhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
.++|++.+.||+|+||.||+|+. .+++.||||++.... ....+.+.++...++.++||||+++++++.+++..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 47899999999999999999997 478999999987543 233344555666688889999999999999999999999
Q ss_pred ecCCCCCHHHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHHccCCCC-CeEecCCCCCCeEeCCCCcEEEeeecccccc
Q 003855 577 EFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLHHGHSSA-PIIHCDLKPTNILLDENMAAHVSDFGISKLL 652 (791)
Q Consensus 577 e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~ 652 (791)
||++ |+|.+++.. ....+++..+..++.|++.||+||| +. +|+||||||+||+++.++.+||+|||+++..
T Consensus 86 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 160 (290)
T 3fme_A 86 ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH----SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYL 160 (290)
T ss_dssp ECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH----HHSCCCCCCCSGGGCEECTTCCEEBCCC------
T ss_pred ehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh----hcCCeecCCCCHHHEEECCCCCEEEeecCCcccc
Confidence 9997 598888763 4556999999999999999999999 55 8999999999999999999999999999876
Q ss_pred CCCCCcceeecccccccccCCCcc----CCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhh
Q 003855 653 GEGEDSVTQTMTMATIGYMAPEYG----SEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTE 728 (791)
Q Consensus 653 ~~~~~~~~~~~~~g~~~y~aPE~~----~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (791)
.... ......||+.|+|||.+ .+..++.++||||+|+++|||++|+.||+............+....+...
T Consensus 161 ~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-- 235 (290)
T 3fme_A 161 VDDV---AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLP-- 235 (290)
T ss_dssp ------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCCCC--
T ss_pred cccc---cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCCcc--
Confidence 4432 22234689999999985 56778999999999999999999999997533222222222221111110
Q ss_pred hcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 729 VVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 729 ~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
...++..+.+++.+||+.||++|||+.|+++
T Consensus 236 ---------------~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 236 ---------------ADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp ---------------TTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ---------------cccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 1124466889999999999999999999987
No 217
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=1.8e-38 Score=356.47 Aligned_cols=250 Identities=25% Similarity=0.357 Sum_probs=203.8
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
..++|++.+.||+|+||+||+|+.. +++.||||++.... ......+.+|+.++++++||||+++++++.+....++|
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 4578999999999999999999975 78999999987543 23456788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeC---CCCcEEEeeecccccc
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLD---ENMAAHVSDFGISKLL 652 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~---~~~~~kl~Dfgla~~~ 652 (791)
|||+++|+|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+||+++ .++.+||+|||+|+.+
T Consensus 100 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~al~~lH----~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~ 174 (486)
T 3mwu_A 100 GELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMH----KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCF 174 (486)
T ss_dssp ECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTB
T ss_pred EEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeEeccCchHHEEEecCCCCCCEEEEECCcCeEC
Confidence 99999999999987654 3899999999999999999999 67899999999999995 5668999999999876
Q ss_pred CCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHH-hcCCChhhhcc
Q 003855 653 GEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKE-SLPHGLTEVVD 731 (791)
Q Consensus 653 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~d 731 (791)
.... .....+||+.|+|||++.+ .++.++||||+||++|+|++|+.||.+... ......+.. .....
T Consensus 175 ~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~~~~~~~------ 242 (486)
T 3mwu_A 175 QQNT---KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE--YDILKRVETGKYAFD------ 242 (486)
T ss_dssp CCC-------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTCCCSC------
T ss_pred CCCC---ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhCCCCCC------
Confidence 5432 2234579999999999875 599999999999999999999999975322 111111111 11000
Q ss_pred hhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 732 ANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.+....++..+.+++.+||+.||++|||+.|+++
T Consensus 243 ---------~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 243 ---------LPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp ---------SGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred ---------CcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 1112235567889999999999999999999987
No 218
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=3.3e-39 Score=344.24 Aligned_cols=267 Identities=25% Similarity=0.282 Sum_probs=200.8
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
.++|++.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 468999999999999999999975 68999999986443 334566889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~ 656 (791)
||+++++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 104 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~qi~~~l~~LH----~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 178 (331)
T 4aaa_A 104 EFVDHTILDDLELFPN-GLDYQVVQKYLFQIINGIGFCH----SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG 178 (331)
T ss_dssp ECCSEEHHHHHHHSTT-CCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred ecCCcchHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHH----HCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCc
Confidence 9999998888766444 4899999999999999999999 6789999999999999999999999999998764332
Q ss_pred CcceeecccccccccCCCccCCC-CCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC--h-------
Q 003855 657 DSVTQTMTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG--L------- 726 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~--~------- 726 (791)
. ......|++.|+|||++.+. .++.++||||+||++|||++|+.||......+ ............. .
T Consensus 179 ~--~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 255 (331)
T 4aaa_A 179 E--VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDID-QLYHIMMCLGNLIPRHQELFNKN 255 (331)
T ss_dssp -------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCSCCHHHHHHHHHC
T ss_pred c--ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHhCCCChhhhhHhhhc
Confidence 2 22335689999999988765 78999999999999999999999997632221 1111111110000 0
Q ss_pred ---hhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 727 ---TEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 727 ---~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.....+..............++..+.+++.+||+.||++|||+.|+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 256 PVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp GGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred cccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 000000000000001111245678899999999999999999999876
No 219
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=1.9e-38 Score=334.08 Aligned_cols=249 Identities=24% Similarity=0.364 Sum_probs=206.3
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 577 (791)
.+.|+..+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.++++++||||+++++++.+....++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 356899999999999999999864 78999999987553 3446788999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCC
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGED 657 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~ 657 (791)
|+++++|.+++... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 101 ~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 174 (303)
T 3a7i_A 101 YLGGGSALDLLEPG--PLDETQIATILREILKGLDYLH----SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI 174 (303)
T ss_dssp CCTTEEHHHHHTTS--CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBC
T ss_pred eCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH----HCCCccCCCChheEEECCCCCEEEeecccceecCcccc
Confidence 99999999999754 4899999999999999999999 67899999999999999999999999999987644321
Q ss_pred cceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhh
Q 003855 658 SVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVRE 737 (791)
Q Consensus 658 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 737 (791)
......|++.|+|||.+.+..++.++||||||+++|||++|+.||...... .....+.......
T Consensus 175 --~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~------------ 238 (303)
T 3a7i_A 175 --KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM--KVLFLIPKNNPPT------------ 238 (303)
T ss_dssp --CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHSCCCC------------
T ss_pred --ccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH--HHHHHhhcCCCCC------------
Confidence 223456899999999999999999999999999999999999999753221 1111111111100
Q ss_pred HHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHH
Q 003855 738 EQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAK 775 (791)
Q Consensus 738 ~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~ 775 (791)
....++..+.+++.+||+.||++|||+.|+++.
T Consensus 239 -----~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 239 -----LEGNYSKPLKEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp -----CCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred -----CccccCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence 011344668899999999999999999999874
No 220
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=8.9e-39 Score=341.02 Aligned_cols=261 Identities=21% Similarity=0.307 Sum_probs=201.0
Q ss_pred hhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhhhHHHHHHHHHHHHHHhcc-CCccceeeeeecc--CCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQLERAFRSFDSECEVLRNVR-HRNLIKILSSCSN--PDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~--~~~~~lv 575 (791)
.++|++.+.||+|+||.||+|+. .+++.||||++.... .+.+.+|+.++++++ ||||+++++++.+ ....++|
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv 111 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV 111 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence 36899999999999999999986 478999999987443 356788999999997 9999999999987 6678999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCC-cEEEeeeccccccCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENM-AAHVSDFGISKLLGE 654 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~-~~kl~Dfgla~~~~~ 654 (791)
|||+++++|.+++.. +++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||+|+....
T Consensus 112 ~e~~~~~~l~~~~~~----~~~~~~~~~~~qi~~~l~~lH----~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~ 183 (330)
T 3nsz_A 112 FEHVNNTDFKQLYQT----LTDYDIRFYMYEILKALDYCH----SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP 183 (330)
T ss_dssp EECCCCCCHHHHGGG----CCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred EeccCchhHHHHHHh----CCHHHHHHHHHHHHHHHHHHH----hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCC
Confidence 999999999999864 788999999999999999999 67899999999999999776 899999999987654
Q ss_pred CCCcceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcc--
Q 003855 655 GEDSVTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVD-- 731 (791)
Q Consensus 655 ~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d-- 731 (791)
... .....|+..|+|||.+.+ ..++.++||||+||++|||++|+.||.........+.............+.++
T Consensus 184 ~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 260 (330)
T 3nsz_A 184 GQE---YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKY 260 (330)
T ss_dssp TCC---CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred CCc---cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHh
Confidence 332 233468999999998876 67999999999999999999999998543222222222111111000000000
Q ss_pred -----hhhhh-----------hHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 732 -----ANLVR-----------EEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 732 -----~~~~~-----------~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
+.... ..........++.++.+++.+||+.||++|||+.|+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 261 NIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp TCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred ccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 00000 00000011225677899999999999999999999986
No 221
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=2.7e-39 Score=344.40 Aligned_cols=269 Identities=22% Similarity=0.263 Sum_probs=195.9
Q ss_pred HHHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeee
Q 003855 497 QRATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKA 573 (791)
Q Consensus 497 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 573 (791)
....++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.++++++||||+++++++.+.+..+
T Consensus 30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (329)
T 3gbz_A 30 ATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH 109 (329)
T ss_dssp --CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred ccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence 344578999999999999999999864 78999999986543 233456788999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEe-----CCCCcEEEeeecc
Q 003855 574 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILL-----DENMAAHVSDFGI 648 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill-----~~~~~~kl~Dfgl 648 (791)
+||||++ |+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||++ +.++.+||+|||+
T Consensus 110 lv~e~~~-~~L~~~~~~~~~-~~~~~~~~i~~ql~~~l~~LH----~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~ 183 (329)
T 3gbz_A 110 LIFEYAE-NDLKKYMDKNPD-VSMRVIKSFLYQLINGVNFCH----SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGL 183 (329)
T ss_dssp EEEECCS-EEHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEEEC-----CCEEEECCTTH
T ss_pred EEEecCC-CCHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHHH----hCCEECCCCCHHHEEEecCCCCccceEEECcCCC
Confidence 9999997 599999987654 899999999999999999999 6789999999999999 4556699999999
Q ss_pred ccccCCCCCcceeecccccccccCCCccCCC-CCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhc-CCC-
Q 003855 649 SKLLGEGEDSVTQTMTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESL-PHG- 725 (791)
Q Consensus 649 a~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~-~~~- 725 (791)
|+....... ......||+.|+|||++.+. .++.++|||||||++|||++|+.||...... ..+...+.... +..
T Consensus 184 a~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~~~~~~~~~~~~~~~ 260 (329)
T 3gbz_A 184 ARAFGIPIR--QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEI-DQLFKIFEVLGLPDDT 260 (329)
T ss_dssp HHHHC-------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCTT
T ss_pred ccccCCccc--ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHH-HHHHHHHHHhCCCchh
Confidence 987643322 22334689999999988764 5899999999999999999999999763221 11222221110 000
Q ss_pred -hhhhc--------chhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 726 -LTEVV--------DANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 726 -~~~~~--------d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..... .+..............++.++.+++.+||+.||++|||+.|+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 261 TWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp TSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 00000 00000000000111224567889999999999999999999975
No 222
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=333.35 Aligned_cols=250 Identities=26% Similarity=0.345 Sum_probs=197.9
Q ss_pred ccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEecCC
Q 003855 502 EFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLEFMP 580 (791)
Q Consensus 502 ~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~ 580 (791)
+|.....||+|+||.||+|+. .+++.||||++........+.+.+|+.+++.++||||+++++++.+.+..++||||++
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 102 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP 102 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence 445556899999999999996 4788999999976655566788999999999999999999999999999999999999
Q ss_pred CCCHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCC-CCcEEEeeeccccccCCCCC
Q 003855 581 NGSLEKWLYSHN--YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDE-NMAAHVSDFGISKLLGEGED 657 (791)
Q Consensus 581 ~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~-~~~~kl~Dfgla~~~~~~~~ 657 (791)
+++|.+++.... ...++..+..++.|++.||.||| +.+|+||||||+||+++. ++.+||+|||+++.......
T Consensus 103 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~ 178 (295)
T 2clq_A 103 GGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH----DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINP 178 (295)
T ss_dssp EEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC---
T ss_pred CCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHH----hCCEEccCCChhhEEEECCCCCEEEeecccccccCCCCC
Confidence 999999998653 34678899999999999999999 678999999999999987 89999999999987643221
Q ss_pred cceeecccccccccCCCccCCCC--CCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhh
Q 003855 658 SVTQTMTMATIGYMAPEYGSEGI--VSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLV 735 (791)
Q Consensus 658 ~~~~~~~~g~~~y~aPE~~~~~~--~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 735 (791)
......|++.|+|||++.+.. ++.++||||||+++|||++|+.||....................
T Consensus 179 --~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~----------- 245 (295)
T 2clq_A 179 --CTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHP----------- 245 (295)
T ss_dssp ----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCCCC-----------
T ss_pred --cccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccccccc-----------
Confidence 123346899999999876543 78999999999999999999999975322211111100000000
Q ss_pred hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 736 REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+..++.++.+++.+||+.||++||++.|+++
T Consensus 246 ------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 246 ------EIPESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp ------CCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred ------cccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 011234567789999999999999999999975
No 223
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=8.6e-39 Score=331.91 Aligned_cols=247 Identities=27% Similarity=0.423 Sum_probs=196.4
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|++.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 367999999999999999999976 79999999997653 23356788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+++++|.+++..... +++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 90 ~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~ 164 (276)
T 2h6d_A 90 MEYVSGGELFDYICKHGR-VEEMEARRLFQQILSAVDYCH----RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 164 (276)
T ss_dssp EECCCSCBHHHHHHHHCS-CCHHHHHHHHHHHHHHHHHHH----HHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-
T ss_pred EeccCCCcHHHHHhccCC-CCHHHHHHHHHHHHHHHHHHH----HCCCccCCCChhhEEECCCCCEEEeecccccccCCC
Confidence 999999999999986543 899999999999999999999 678999999999999999999999999999876543
Q ss_pred CCcceeecccccccccCCCccCCCCC-CccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhh
Q 003855 656 EDSVTQTMTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANL 734 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 734 (791)
.. .....|++.|+|||.+.+..+ +.++||||||+++|||++|+.||..... ....+.+.....
T Consensus 165 ~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~~~----------- 228 (276)
T 2h6d_A 165 EF---LRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHV--PTLFKKIRGGVF----------- 228 (276)
T ss_dssp ---------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCCC-----------
T ss_pred cc---eecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcH--HHHHHHhhcCcc-----------
Confidence 21 223468999999999887665 6899999999999999999999975321 111111111000
Q ss_pred hhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 735 VREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+..++..+.+++.+||+.||++|||+.|+++
T Consensus 229 -------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~ 261 (276)
T 2h6d_A 229 -------YIPEYLNRSVATLLMHMLQVDPLKRATIKDIRE 261 (276)
T ss_dssp -------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred -------cCchhcCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence 001123456789999999999999999999987
No 224
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.1e-39 Score=345.55 Aligned_cols=270 Identities=26% Similarity=0.309 Sum_probs=200.3
Q ss_pred HHHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhh-----HHHHHHHHHHHHHHhccCCccceeeeeeccCC
Q 003855 497 QRATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLE-----RAFRSFDSECEVLRNVRHRNLIKILSSCSNPD 570 (791)
Q Consensus 497 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~ 570 (791)
....++|++.+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|+.++++++||||+++++++.+..
T Consensus 6 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 85 (346)
T 1ua2_A 6 KSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS 85 (346)
T ss_dssp -------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred HHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCC
Confidence 344578999999999999999999975 689999999865321 11246788999999999999999999999999
Q ss_pred eeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 571 FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 571 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
..++||||+++ +|.+++......+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 86 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~ 160 (346)
T 1ua2_A 86 NISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH----QHWILHRDLKPNNLLLDENGVLKLADFGLAK 160 (346)
T ss_dssp CCEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTCCEEECCCGGGS
T ss_pred ceEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHH----HCCEECCCCCHHHEEEcCCCCEEEEecccce
Confidence 99999999975 999999877767899999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCcceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCC---Ch
Q 003855 651 LLGEGEDSVTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPH---GL 726 (791)
Q Consensus 651 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~---~~ 726 (791)
.+..... ......||+.|+|||.+.+ ..++.++|||||||++|||++|..||.+.... ..+.+.+...... .+
T Consensus 161 ~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~-~~~~~i~~~~~~~~~~~~ 237 (346)
T 1ua2_A 161 SFGSPNR--AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDL-DQLTRIFETLGTPTEEQW 237 (346)
T ss_dssp TTTSCCC--CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCTTTS
T ss_pred eccCCcc--cCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHcCCCChhhh
Confidence 7643322 2334568999999998865 45899999999999999999999998763221 1222222211110 00
Q ss_pred hhh------cchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 727 TEV------VDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 727 ~~~------~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.+. +................++.++.+++.+||+.||++|||+.|+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 291 (346)
T 1ua2_A 238 PDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK 291 (346)
T ss_dssp SSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred hhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence 000 000000000000011234577889999999999999999999986
No 225
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.7e-38 Score=349.40 Aligned_cols=349 Identities=28% Similarity=0.384 Sum_probs=304.1
Q ss_pred cCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCcccccccccccccccccc
Q 003855 34 FNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLS 113 (791)
Q Consensus 34 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 113 (791)
..+++|+.|++++|.++ .+|. +.. +++|++|+|++|.+++..+ |.++++|++|+|++|.+.+..+ |.++++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~~-~~~-l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SIDG-VEY-LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT 115 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCTT-GGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hHhccccEEecCCCCCc-cCcc-hhh-hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCC
Confidence 34678999999999998 7885 443 8999999999999997654 9999999999999999997766 99999999
Q ss_pred ccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCC
Q 003855 114 LLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGL 193 (791)
Q Consensus 114 ~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 193 (791)
.|++++|+++.++ .+..+++|++|++++|.+++. + .+..+ .+|++|++. |.+.+.. .+.++++|
T Consensus 116 ~L~L~~n~l~~~~----------~~~~l~~L~~L~l~~n~l~~~-~-~~~~l-~~L~~L~l~-~~~~~~~--~~~~l~~L 179 (466)
T 1o6v_A 116 GLTLFNNQITDID----------PLKNLTNLNRLELSSNTISDI-S-ALSGL-TSLQQLSFG-NQVTDLK--PLANLTTL 179 (466)
T ss_dssp EEECCSSCCCCCG----------GGTTCTTCSEEEEEEEEECCC-G-GGTTC-TTCSEEEEE-ESCCCCG--GGTTCTTC
T ss_pred EEECCCCCCCCCh----------HHcCCCCCCEEECCCCccCCC-h-hhccC-CcccEeecC-CcccCch--hhccCCCC
Confidence 9999999998754 288999999999999999864 2 34444 679999996 5555433 38999999
Q ss_pred CEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCC
Q 003855 194 TLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSN 273 (791)
Q Consensus 194 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 273 (791)
+.|++++|.+++. ..+..+++|++|++++|.+++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|
T Consensus 180 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 180 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 253 (466)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred CEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCC
Confidence 9999999999854 458899999999999999996655 78899999999999999854 46889999999999999
Q ss_pred cCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCc
Q 003855 274 KLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPE 353 (791)
Q Consensus 274 ~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 353 (791)
++.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..|
T Consensus 254 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~- 326 (466)
T 1o6v_A 254 QISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP- 326 (466)
T ss_dssp CCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-
T ss_pred ccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-
Confidence 9987655 8899999999999999987544 8899999999999999996544 8899999999999999997655
Q ss_pred ccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCCCCCCcCCccccccCCccccCC
Q 003855 354 SVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVKGSFKNFSVESFFGNYALCGP 422 (791)
Q Consensus 354 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~ 422 (791)
+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.+| ...++.++.+.+.+|++..-|
T Consensus 327 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCC
T ss_pred -hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCc
Confidence 78999999999999999975 578999999999999999999988 677889999999999887643
No 226
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=1.9e-38 Score=341.40 Aligned_cols=268 Identities=21% Similarity=0.289 Sum_probs=203.1
Q ss_pred hhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeecc--------
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSN-------- 568 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-------- 568 (791)
.++|++.+.||+|+||.||+|+. .+|+.||||++.... ......+.+|+.++++++||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 46899999999999999999997 478999999886443 2234567789999999999999999999876
Q ss_pred CCeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecc
Q 003855 569 PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGI 648 (791)
Q Consensus 569 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgl 648 (791)
.+..++||||+++ ++.+.+......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH----~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 170 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIH----RNKILHRDMKAANVLITRDGVLKLADFGL 170 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred CceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH----HCCeeCCCCCHHHEEEcCCCCEEEccchh
Confidence 4468999999974 888888876666999999999999999999999 67899999999999999999999999999
Q ss_pred ccccCCCCC--cceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHh---c
Q 003855 649 SKLLGEGED--SVTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKES---L 722 (791)
Q Consensus 649 a~~~~~~~~--~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~---~ 722 (791)
|+.+..... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.... .....+... .
T Consensus 171 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--~~~~~i~~~~~~~ 248 (351)
T 3mi9_A 171 ARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQ--HQLALISQLCGSI 248 (351)
T ss_dssp CEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHHHHCCC
T ss_pred cccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChH--HHHHHHHHHhCCC
Confidence 987653322 122344578999999998765 56899999999999999999999999763221 111212111 1
Q ss_pred CCC-hhhhcchhhh----------hhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 723 PHG-LTEVVDANLV----------REEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 723 ~~~-~~~~~d~~~~----------~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
+.. ....-..... ............++.+.+++.+||+.||++|||+.|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 249 TPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp CTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 111 1110000000 000000011122456889999999999999999999986
No 227
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=3.3e-39 Score=347.11 Aligned_cols=263 Identities=22% Similarity=0.292 Sum_probs=206.0
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHH-----------------HHHHHHHHHHHHhccCCcccee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERA-----------------FRSFDSECEVLRNVRHRNLIKI 562 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~-----------------~~~~~~e~~~l~~l~h~niv~l 562 (791)
.++|++.+.||+|+||.||+|+. +++.||||++....... .+.+.+|+.++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46899999999999999999999 89999999997653221 1788999999999999999999
Q ss_pred eeeeccCCeeeEEEecCCCCCHHHH------HhhC-CCCCCHHHHHHHHHHHHHHHHHHHccCCC-CCeEecCCCCCCeE
Q 003855 563 LSSCSNPDFKALVLEFMPNGSLEKW------LYSH-NYFLDILERLNIMIDVGSALEYLHHGHSS-APIIHCDLKPTNIL 634 (791)
Q Consensus 563 ~~~~~~~~~~~lv~e~~~~g~L~~~------l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~~i~H~dlk~~Nil 634 (791)
++++.+.+..++||||+++|+|.++ +... ...+++..+..++.|++.||.||| + .+|+||||||+||+
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~~i~H~dl~p~Nil 184 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIH----NEKNICHRDVKPSNIL 184 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHH----HTSCEECCCCCGGGEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHh----ccCCEeecCCChHhEE
Confidence 9999999999999999999999998 5542 456899999999999999999999 5 78999999999999
Q ss_pred eCCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCC-CCCc-cccHHhHHHHHHHHHhCCCCCCccccCcc
Q 003855 635 LDENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEG-IVSA-KCDVYSYGVLLMETFTRKRPTDEMFTGEM 712 (791)
Q Consensus 635 l~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-~~~~-~~Dv~s~G~vl~elltg~~p~~~~~~~~~ 712 (791)
++.++.+||+|||.++..... ......|+..|+|||.+.+. .++. ++||||||+++|||++|+.||.......
T Consensus 185 ~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~- 259 (348)
T 2pml_X 185 MDKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLV- 259 (348)
T ss_dssp ECTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSH-
T ss_pred EcCCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHH-
Confidence 999999999999999876432 33445689999999998877 6666 9999999999999999999997643322
Q ss_pred hHHHHHHHhcCC---ChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 713 SLRRWVKESLPH---GLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 713 ~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.....+...... .......+.... ........++..+.+++.+||+.||++||++.|+++
T Consensus 260 ~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 260 ELFNNIRTKNIEYPLDRNHFLYPLTNK--KSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp HHHHHHTSCCCCCCCSSSSSTTTTCC----------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHHHHhccCcCCccchhhhhcccccc--ccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 222222111000 000000000000 000111245677889999999999999999999986
No 228
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=337.89 Aligned_cols=251 Identities=25% Similarity=0.323 Sum_probs=201.0
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEe
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 577 (791)
..++|++.+.||+|+||.||+|... +|+.||||++.... ..+.+.+|+.++++++||||+++++++.+....++|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence 3568999999999999999999975 68999999987543 23578889999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCC
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGED 657 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~ 657 (791)
|+++|+|.+++......+++..+..++.|++.||.||| +.+++||||||+||+++.++.+||+|||++........
T Consensus 105 ~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~ 180 (314)
T 3com_A 105 YCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLH----FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMA 180 (314)
T ss_dssp CCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBS
T ss_pred cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----hCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhcc
Confidence 99999999999865556899999999999999999999 67899999999999999999999999999987643321
Q ss_pred cceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhh
Q 003855 658 SVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVRE 737 (791)
Q Consensus 658 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 737 (791)
......|++.|+|||.+.+..++.++||||||+++|||++|+.||....... ....+........
T Consensus 181 --~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~~~~~~~----------- 245 (314)
T 3com_A 181 --KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMR--AIFMIPTNPPPTF----------- 245 (314)
T ss_dssp --CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHH--HHHHHHHSCCCCC-----------
T ss_pred --ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHH--HHHHHhcCCCccc-----------
Confidence 2233468999999999998899999999999999999999999997532211 1111111110000
Q ss_pred HHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 738 EQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 738 ~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+..++..+.+++.+||+.||++|||+.|+++
T Consensus 246 ----~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 246 ----RKPELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp ----SSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ----CCcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 011234567889999999999999999999976
No 229
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=2e-38 Score=356.80 Aligned_cols=250 Identities=24% Similarity=0.309 Sum_probs=199.0
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ......+.+|+.++++++||||+++++++.+....++||
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 115 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM 115 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 467999999999999999999975 78999999987543 233567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCC---CCcEEEeeeccccccC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDE---NMAAHVSDFGISKLLG 653 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~---~~~~kl~Dfgla~~~~ 653 (791)
||+++|+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+||+++. ++.+||+|||+|+.+.
T Consensus 116 e~~~~g~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH----~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~ 190 (494)
T 3lij_A 116 ECYKGGELFDEIIHRM-KFNEVDAAVIIKQVLSGVTYLH----KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFE 190 (494)
T ss_dssp ECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECB
T ss_pred ecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECC
Confidence 9999999999987654 3899999999999999999999 678999999999999976 4559999999998765
Q ss_pred CCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchh
Q 003855 654 EGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDAN 733 (791)
Q Consensus 654 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 733 (791)
... .....+||+.|+|||++. +.++.++||||+||++|||++|+.||.+.... .....+.......
T Consensus 191 ~~~---~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~~~~~~-------- 256 (494)
T 3lij_A 191 NQK---KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQ--EILRKVEKGKYTF-------- 256 (494)
T ss_dssp TTB---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTCCCC--------
T ss_pred CCc---cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhCCCCC--------
Confidence 432 223456999999999876 56999999999999999999999999763221 1111111110000
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 734 LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+....++..+.+++.+||+.||++|||+.|+++
T Consensus 257 ------~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 257 ------DSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp ------CSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ------CchhcccCCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence 00111234567889999999999999999999985
No 230
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=1.1e-38 Score=331.82 Aligned_cols=256 Identities=22% Similarity=0.302 Sum_probs=201.6
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeee--ccCCeeeE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSC--SNPDFKAL 574 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~--~~~~~~~l 574 (791)
.++|++.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.++++++||||+++++++ ......++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 468999999999999999999975 78999999987543 34456789999999999999999999987 44678899
Q ss_pred EEecCCCCCHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHHccC-CCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 575 VLEFMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSALEYLHHGH-SSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~-~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
||||+++|+|.+++... ...+++..++.++.|++.||+|||+.. ...+|+||||||+||+++.++.+||+|||+++
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~ 164 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR 164 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHH
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchhe
Confidence 99999999999999743 345899999999999999999999421 01129999999999999999999999999998
Q ss_pred ccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhc
Q 003855 651 LLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVV 730 (791)
Q Consensus 651 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (791)
....... ......|+..|+|||.+.+..++.++||||||+++|||++|+.||..... ......+.......
T Consensus 165 ~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~i~~~~~~~----- 235 (279)
T 2w5a_A 165 ILNHDTS--FAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ--KELAGKIREGKFRR----- 235 (279)
T ss_dssp HC---CH--HHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTCCCC-----
T ss_pred eeccccc--cccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCH--HHHHHHHhhccccc-----
Confidence 7643321 12234689999999999888899999999999999999999999976321 11111111111000
Q ss_pred chhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHH
Q 003855 731 DANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKL 776 (791)
Q Consensus 731 d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L 776 (791)
.+..++.++.+++.+||+.||++||++.|+++.+
T Consensus 236 ------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~ 269 (279)
T 2w5a_A 236 ------------IPYRYSDELNEIITRMLNLKDYHRPSVEEILENP 269 (279)
T ss_dssp ------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred ------------CCcccCHHHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence 0113456788999999999999999999998754
No 231
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=2.8e-38 Score=341.61 Aligned_cols=267 Identities=23% Similarity=0.259 Sum_probs=202.7
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccC-----Cee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNP-----DFK 572 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~ 572 (791)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 468999999999999999999865 78899999987543 34456788999999999999999999998654 468
Q ss_pred eEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccccc
Q 003855 573 ALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLL 652 (791)
Q Consensus 573 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~ 652 (791)
++||||++ |+|.+++.... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 106 ~iv~e~~~-~~L~~~l~~~~--~~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~ 178 (364)
T 3qyz_A 106 YIVQDLME-TDLYKLLKTQH--LSNDHICYFLYQILRGLKYIH----SANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 178 (364)
T ss_dssp EEEEECCS-EEHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEEcccC-cCHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHH----HCCeecCCCChHhEEECCCCCEEEEeCcceEec
Confidence 99999996 59999998754 899999999999999999999 678999999999999999999999999999876
Q ss_pred CCCCCcc-eeecccccccccCCCccC-CCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC---hh
Q 003855 653 GEGEDSV-TQTMTMATIGYMAPEYGS-EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG---LT 727 (791)
Q Consensus 653 ~~~~~~~-~~~~~~g~~~y~aPE~~~-~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~---~~ 727 (791)
....... .....+||+.|+|||++. ...++.++||||+||++|||++|+.||.+....+ .+........... ..
T Consensus 179 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~ 257 (364)
T 3qyz_A 179 DPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLD-QLNHILGILGSPSQEDLN 257 (364)
T ss_dssp CGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGG-HHHHHHHHHCSCCHHHHH
T ss_pred CCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHH-HHHHHHHHhCCCCHHHHH
Confidence 5432211 123347899999999754 4568999999999999999999999997643221 2222211111110 00
Q ss_pred hhcchhhhhhHH---------hhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 728 EVVDANLVREEQ---------AFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 728 ~~~d~~~~~~~~---------~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
...+........ .......++.++.+++.+||+.||++|||+.|+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 258 CIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp TCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 000000000000 00011234567889999999999999999999986
No 232
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=2.5e-38 Score=342.07 Aligned_cols=273 Identities=21% Similarity=0.237 Sum_probs=202.2
Q ss_pred hhHHHHHhhccccccccCCCcceEEEEEEecCCcEEEEEEeehhh-----------hHHHHHHHHHHHHHHhccCCccce
Q 003855 493 YLDIQRATDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQL-----------ERAFRSFDSECEVLRNVRHRNLIK 561 (791)
Q Consensus 493 ~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~-----------~~~~~~~~~e~~~l~~l~h~niv~ 561 (791)
..++....++|++.+.||+|+||.||+|...+|+.||||++.... ....+.+.+|+.++++++||||++
T Consensus 14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~ 93 (362)
T 3pg1_A 14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG 93 (362)
T ss_dssp HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence 456777889999999999999999999998889999999885421 223477899999999999999999
Q ss_pred eeeeec-----cCCeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeC
Q 003855 562 ILSSCS-----NPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLD 636 (791)
Q Consensus 562 l~~~~~-----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~ 636 (791)
+++++. .....++||||++ |+|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++
T Consensus 94 ~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~Dlkp~NIl~~ 168 (362)
T 3pg1_A 94 LRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLH----EAGVVHRDLHPGNILLA 168 (362)
T ss_dssp CSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEEC
T ss_pred eeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH----HCcCEecCCChHHEEEc
Confidence 999983 3446899999997 6999999877767999999999999999999999 67899999999999999
Q ss_pred CCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHH
Q 003855 637 ENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLR 715 (791)
Q Consensus 637 ~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~ 715 (791)
.++.+||+|||+++...... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... ....
T Consensus 169 ~~~~~kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-~~~~ 244 (362)
T 3pg1_A 169 DNNDITICDFNLAREDTADA---NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFY-NQLN 244 (362)
T ss_dssp TTCCEEECCTTC------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHH
T ss_pred CCCCEEEEecCccccccccc---ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHH-HHHH
Confidence 99999999999997543322 2233568999999998776 67999999999999999999999999763211 1111
Q ss_pred HHHHHhcCCChhhh-----------cchhhhhhH--HhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 716 RWVKESLPHGLTEV-----------VDANLVREE--QAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 716 ~~~~~~~~~~~~~~-----------~d~~~~~~~--~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+.........+. +........ ........++..+.+++.+||+.||++|||+.|+++
T Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 316 (362)
T 3pg1_A 245 KIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR 316 (362)
T ss_dssp HHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence 21111111111000 000000000 000111234567889999999999999999999986
No 233
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=1.2e-38 Score=339.04 Aligned_cols=261 Identities=19% Similarity=0.240 Sum_probs=206.7
Q ss_pred CChhHHHHHhhccccc-cccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhc-cCCccceeeee
Q 003855 491 TPYLDIQRATDEFNEC-NLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNV-RHRNLIKILSS 565 (791)
Q Consensus 491 ~~~~~~~~~~~~~~~~-~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l-~h~niv~l~~~ 565 (791)
..+...+...+.|.+. +.||+|+||.||+|+.. +++.||||++.... ......+.+|+.+++++ +||||++++++
T Consensus 18 ~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~ 97 (327)
T 3lm5_A 18 LYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEV 97 (327)
T ss_dssp CCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEE
T ss_pred hHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEE
Confidence 3455566777888887 89999999999999975 68999999987543 23356788999999999 56999999999
Q ss_pred eccCCeeeEEEecCCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCC---CCcE
Q 003855 566 CSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDE---NMAA 641 (791)
Q Consensus 566 ~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~---~~~~ 641 (791)
+.+....++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++. ++.+
T Consensus 98 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH----~~givH~Dikp~NIl~~~~~~~~~~ 173 (327)
T 3lm5_A 98 YENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLH----QNNIVHLDLKPQNILLSSIYPLGDI 173 (327)
T ss_dssp EECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEESCBTTBCCE
T ss_pred EEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH----HCCeecCcCChHHEEEecCCCCCcE
Confidence 99999999999999999999998643 345899999999999999999999 678999999999999997 7899
Q ss_pred EEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHh
Q 003855 642 HVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKES 721 (791)
Q Consensus 642 kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 721 (791)
||+|||+++....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||......+ ....+...
T Consensus 174 kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~--~~~~i~~~ 248 (327)
T 3lm5_A 174 KIVDFGMSRKIGHACE---LREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQE--TYLNISQV 248 (327)
T ss_dssp EECCGGGCEEC------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHT
T ss_pred EEeeCccccccCCccc---cccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchH--HHHHHHhc
Confidence 9999999987654322 223468999999999999999999999999999999999999997532211 11111111
Q ss_pred cCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 722 LPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 722 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
...... .....++..+.+++.+||+.||++|||+.|+++
T Consensus 249 ~~~~~~--------------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 249 NVDYSE--------------ETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp CCCCCT--------------TTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ccccCc--------------hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence 100000 011134566889999999999999999999975
No 234
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=1.8e-38 Score=335.81 Aligned_cols=255 Identities=23% Similarity=0.335 Sum_probs=197.6
Q ss_pred HHHhhccccccccCCCcceEEEEEEecCCcEEEEEEeehhh--hHHHHHHHHHHHHHHhcc--CCccceeeeeeccCCee
Q 003855 497 QRATDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVR--HRNLIKILSSCSNPDFK 572 (791)
Q Consensus 497 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~ 572 (791)
....++|++.+.||+|+||.||+|+..+++.||||++.... ....+.+.+|+.++++++ ||||+++++++.+....
T Consensus 24 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~ 103 (313)
T 3cek_A 24 SVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYI 103 (313)
T ss_dssp EETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEE
T ss_pred eeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEE
Confidence 33457899999999999999999998889999999986442 445678899999999997 59999999999999999
Q ss_pred eEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccccc
Q 003855 573 ALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLL 652 (791)
Q Consensus 573 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~ 652 (791)
++||| +.+++|.+++.... .+++..+..++.|+++||.||| +.+|+||||||+||++++ +.+||+|||+++..
T Consensus 104 ~lv~e-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~ 176 (313)
T 3cek_A 104 YMVME-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH----QHGIVHSDLKPANFLIVD-GMLKLIDFGIANQM 176 (313)
T ss_dssp EEEEC-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEEET-TEEEECCCSSSCC-
T ss_pred EEEEe-cCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCceecCCCcccEEEEC-CeEEEeeccccccc
Confidence 99999 55889999998765 4899999999999999999999 678999999999999964 89999999999876
Q ss_pred CCCCCcceeecccccccccCCCccCC-----------CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHh
Q 003855 653 GEGEDSVTQTMTMATIGYMAPEYGSE-----------GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKES 721 (791)
Q Consensus 653 ~~~~~~~~~~~~~g~~~y~aPE~~~~-----------~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 721 (791)
.............|++.|+|||.+.+ ..++.++||||||+++|||++|+.||.............+...
T Consensus 177 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~ 256 (313)
T 3cek_A 177 QPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPN 256 (313)
T ss_dssp -------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTT
T ss_pred cCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcc
Confidence 54433333334568999999998765 4788899999999999999999999975432211111111110
Q ss_pred cCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHH
Q 003855 722 LPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAK 775 (791)
Q Consensus 722 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~ 775 (791)
..... +..++..+.+++.+||+.||++||++.|+++.
T Consensus 257 ~~~~~-----------------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 293 (313)
T 3cek_A 257 HEIEF-----------------PDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 293 (313)
T ss_dssp SCCCC-----------------CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred cccCC-----------------cccchHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 00000 01123567899999999999999999999863
No 235
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=1.9e-39 Score=351.65 Aligned_cols=263 Identities=11% Similarity=0.105 Sum_probs=187.9
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhc--cCCccceee-------eee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNV--RHRNLIKIL-------SSC 566 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l--~h~niv~l~-------~~~ 566 (791)
..+|+..+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.+++.+ +||||++++ +++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 346899999999999999999975 78999999997643 34456677886555555 599988755 333
Q ss_pred ccC-----------------CeeeEEEecCCCCCHHHHHhhCCCCCCHHHH------HHHHHHHHHHHHHHHccCCCCCe
Q 003855 567 SNP-----------------DFKALVLEFMPNGSLEKWLYSHNYFLDILER------LNIMIDVGSALEYLHHGHSSAPI 623 (791)
Q Consensus 567 ~~~-----------------~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~------~~i~~~i~~~l~~LH~~~~~~~i 623 (791)
..+ ...++||||++ |+|.+++...+..+++..+ ..++.||+.||+||| +.+|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH----~~~i 215 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQ----SKGL 215 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHH----HTTE
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHH----HCCC
Confidence 222 33799999998 8999999865444566666 788899999999999 6789
Q ss_pred EecCCCCCCeEeCCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCC--CCCCccccHHhHHHHHHHHHhCC
Q 003855 624 IHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLLMETFTRK 701 (791)
Q Consensus 624 ~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~--~~~~~~~Dv~s~G~vl~elltg~ 701 (791)
+||||||+|||++.++.+||+|||+|+.... ......+|+.|+|||++.+ ..++.++|||||||++|||+||+
T Consensus 216 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~ 290 (371)
T 3q60_A 216 VHGHFTPDNLFIMPDGRLMLGDVSALWKVGT-----RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLF 290 (371)
T ss_dssp EETTCSGGGEEECTTSCEEECCGGGEEETTC-----EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSS
T ss_pred ccCcCCHHHEEECCCCCEEEEecceeeecCC-----CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999987532 1213457799999999987 67999999999999999999999
Q ss_pred CCCCccccCcchHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH--HHHHH
Q 003855 702 RPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA--KLKKI 779 (791)
Q Consensus 702 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~--~L~~~ 779 (791)
.||.......... |... ......... ...+....++..+.+++.+||+.||++|||+.|+++ .+.++
T Consensus 291 ~Pf~~~~~~~~~~--~~~~----~~~~~~~~~-----~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~ 359 (371)
T 3q60_A 291 LPFGLVTPGIKGS--WKRP----SLRVPGTDS-----LAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQL 359 (371)
T ss_dssp CSTTBCCTTCTTC--CCBC----CTTSCCCCS-----CCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHH
T ss_pred CCCCCcCcccccc--hhhh----hhhhccccc-----cchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHH
Confidence 9998753321110 0000 000000000 001111245577889999999999999999999975 44555
Q ss_pred HHHh
Q 003855 780 KVKF 783 (791)
Q Consensus 780 ~~~~ 783 (791)
....
T Consensus 360 ~~~~ 363 (371)
T 3q60_A 360 QNEI 363 (371)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 236
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.6e-38 Score=342.23 Aligned_cols=336 Identities=22% Similarity=0.249 Sum_probs=264.9
Q ss_pred CCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCccccccccccccccccccc
Q 003855 35 NISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSL 114 (791)
Q Consensus 35 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 114 (791)
.++++++|++++|.++ .+|..++..+++|++|+|++|.|+++.+..|..+++|++|+|++|.++++.+..|.++++|+.
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4688899999999987 888887777889999999999998888888999999999999999998888888888888888
Q ss_pred cccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCC
Q 003855 115 LSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLT 194 (791)
Q Consensus 115 L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 194 (791)
|++++|+++.++... |.++++|++|++++|++++. .+..|.++++|+
T Consensus 122 L~L~~n~l~~l~~~~--------~~~l~~L~~L~L~~n~l~~~-------------------------~~~~~~~l~~L~ 168 (390)
T 3o6n_A 122 LVLERNDLSSLPRGI--------FHNTPKLTTLSMSNNNLERI-------------------------EDDTFQATTSLQ 168 (390)
T ss_dssp EECCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCCBC-------------------------CTTTTSSCTTCC
T ss_pred EECCCCccCcCCHHH--------hcCCCCCcEEECCCCccCcc-------------------------ChhhccCCCCCC
Confidence 888888888766543 67888888888888888753 344567778888
Q ss_pred EEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCc
Q 003855 195 LLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNK 274 (791)
Q Consensus 195 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 274 (791)
.|++++|++++. .+..+++|++|++++|.+++ +...++|+.|++++|.+... |. ...++|+.|++++|+
T Consensus 169 ~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~ 237 (390)
T 3o6n_A 169 NLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNN 237 (390)
T ss_dssp EEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSC
T ss_pred EEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCC
Confidence 888888888754 35667888888888888773 33446788888888888743 32 234788888888888
Q ss_pred CCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcc
Q 003855 275 LTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPES 354 (791)
Q Consensus 275 l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 354 (791)
+++. ..+..+++|++|++++|.+++..|..|..+++|+.|+|++|++++ +|..+..+++|+.|++++|+++ .+|..
T Consensus 238 l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~ 313 (390)
T 3o6n_A 238 LTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERN 313 (390)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGG
T ss_pred Cccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcc
Confidence 8753 567888888888888888888888888888889999999988884 5666677888999999999888 57777
Q ss_pred cCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCCCCCCcCCccccccCCccccCCC
Q 003855 355 VGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVKGSFKNFSVESFFGNYALCGPP 423 (791)
Q Consensus 355 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 423 (791)
+..+++|+.|+|++|+++.. + +..+++|+.|++++|++++.... ..+..+....+.++...|..+
T Consensus 314 ~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 314 QPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp HHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred ccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 88888999999999998854 3 66788899999999998875432 234445555566777777643
No 237
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=1.2e-38 Score=341.45 Aligned_cols=250 Identities=24% Similarity=0.317 Sum_probs=197.9
Q ss_pred hhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhh-hHHHHHHHHHHHH-HHhccCCccceeeeeeccCCeeeEEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQL-ERAFRSFDSECEV-LRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~e~~~-l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
.++|+..+.||+|+||.||+|+. .+|+.||||++.... ......+..|..+ ++.++||||+++++++.+.+..++||
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 129 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 129 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEEE
T ss_pred hhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEEH
Confidence 46789999999999999999996 478999999986542 2233444555555 77789999999999999999999999
Q ss_pred ecCCCCCHHHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHHccCCCC-CeEecCCCCCCeEeCCCCcEEEeeecccccc
Q 003855 577 EFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLHHGHSSA-PIIHCDLKPTNILLDENMAAHVSDFGISKLL 652 (791)
Q Consensus 577 e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~ 652 (791)
||+++ +|.+++.. ....+++..+..++.||+.||+||| +. +|+||||||+||+++.++.+||+|||+++..
T Consensus 130 e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH----~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 204 (340)
T 3an0_A 130 ELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH----SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYL 204 (340)
T ss_dssp CCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHH----HHTCCCCCSCCSTTEEECSTTCEEECCCSHHHHH
T ss_pred HHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh----hcCCeecCCCCHHHEEECCCCCEEEeeCCCceec
Confidence 99975 99998874 4556999999999999999999999 44 8999999999999999999999999999876
Q ss_pred CCCCCcceeecccccccccCCCccC----CCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhh
Q 003855 653 GEGEDSVTQTMTMATIGYMAPEYGS----EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTE 728 (791)
Q Consensus 653 ~~~~~~~~~~~~~g~~~y~aPE~~~----~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (791)
... .......||+.|+|||++. ...++.++|||||||++|||+||+.||.........+...+....+..
T Consensus 205 ~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--- 278 (340)
T 3an0_A 205 VDS---VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQL--- 278 (340)
T ss_dssp SCH---HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCCC---
T ss_pred ccc---cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchHHHHHHHhcCCCCCC---
Confidence 432 1223346899999999853 457899999999999999999999999753222222222111111100
Q ss_pred hcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 729 VVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 729 ~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
....++.++.+++.+||+.||++||++.|+++
T Consensus 279 --------------~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 279 --------------PADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp --------------CGGGSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred --------------CcccCCHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 01124567889999999999999999999987
No 238
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=2e-39 Score=341.58 Aligned_cols=261 Identities=25% Similarity=0.334 Sum_probs=187.1
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
..++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|+.++++++||||+++++++...+..++||
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (303)
T 2vwi_A 13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVM 92 (303)
T ss_dssp CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEE
T ss_pred chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEe
Confidence 4578999999999999999999864 78999999886543 334567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhh-------CCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccc
Q 003855 577 EFMPNGSLEKWLYS-------HNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGIS 649 (791)
Q Consensus 577 e~~~~g~L~~~l~~-------~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla 649 (791)
||+++|+|.+++.. ....+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++
T Consensus 93 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~ 168 (303)
T 2vwi_A 93 KLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH----KNGQIHRDVKAGNILLGEDGSVQIADFGVS 168 (303)
T ss_dssp ECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCSGGGEEECTTCCEEECCCHHH
T ss_pred hhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH----hCCCCCCCCChhhEEEcCCCCEEEEeccch
Confidence 99999999999974 2345899999999999999999999 678999999999999999999999999999
Q ss_pred cccCCCCCc---ceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC
Q 003855 650 KLLGEGEDS---VTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG 725 (791)
Q Consensus 650 ~~~~~~~~~---~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 725 (791)
+........ .......||+.|+|||++.+ ..++.++||||||+++|||++|+.||........ ... ........
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~-~~~~~~~~ 246 (303)
T 2vwi_A 169 AFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKV-LML-TLQNDPPS 246 (303)
T ss_dssp HHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGH-HHH-HHTSSCCC
T ss_pred heeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhH-HHH-HhccCCCc
Confidence 876543211 11233468999999998765 5689999999999999999999999976433221 111 11111111
Q ss_pred hh-hhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 726 LT-EVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 726 ~~-~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.. ...+.. ....++..+.+++.+||+.||++||++.|+++
T Consensus 247 ~~~~~~~~~---------~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 247 LETGVQDKE---------MLKKYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp TTC-----C---------CCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred cccccccch---------hhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 00 000000 01134467889999999999999999999986
No 239
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=2.2e-38 Score=336.62 Aligned_cols=253 Identities=27% Similarity=0.340 Sum_probs=199.1
Q ss_pred HHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--------hHHHHHHHHHHHHHHhccCCccceeeeeecc
Q 003855 498 RATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--------ERAFRSFDSECEVLRNVRHRNLIKILSSCSN 568 (791)
Q Consensus 498 ~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~ 568 (791)
...++|++.+.||+|+||.||+|+.. +++.||||++.... ......+.+|++++++++||||+++++++..
T Consensus 7 ~l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~ 86 (322)
T 2ycf_A 7 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 86 (322)
T ss_dssp HHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES
T ss_pred hhhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC
Confidence 34578999999999999999999975 68899999986432 1223457889999999999999999999876
Q ss_pred CCeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCc---EEEee
Q 003855 569 PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMA---AHVSD 645 (791)
Q Consensus 569 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~---~kl~D 645 (791)
.. .++||||+++|+|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+||+++.++. +||+|
T Consensus 87 ~~-~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~dlkp~NIl~~~~~~~~~~kl~D 160 (322)
T 2ycf_A 87 ED-YYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLH----ENGIIHRDLKPENVLLSSQEEDCLIKITD 160 (322)
T ss_dssp SS-EEEEEECCTTEETHHHHSTTC-CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEESSSSSSCCEEECC
T ss_pred Cc-eEEEEecCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH----HCCeeccCCCHHHEEEecCCCCCeEEEcc
Confidence 55 899999999999999997654 4899999999999999999999 678999999999999987654 99999
Q ss_pred eccccccCCCCCcceeecccccccccCCCcc---CCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhc
Q 003855 646 FGISKLLGEGEDSVTQTMTMATIGYMAPEYG---SEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESL 722 (791)
Q Consensus 646 fgla~~~~~~~~~~~~~~~~g~~~y~aPE~~---~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 722 (791)
||+++...... ......||+.|+|||++ ....++.++|||||||++|||++|+.||....... .+...+....
T Consensus 161 fg~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~ 236 (322)
T 2ycf_A 161 FGHSKILGETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQV-SLKDQITSGK 236 (322)
T ss_dssp CTTCEECCCCH---HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSS-CHHHHHHHTC
T ss_pred Cccceeccccc---ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHH-HHHHHHHhCc
Confidence 99998764321 12234689999999985 35678999999999999999999999997643322 2222222111
Q ss_pred CCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 723 PHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 723 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..... .....++..+.+++.+||+.||++||++.|+++
T Consensus 237 ~~~~~--------------~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 237 YNFIP--------------EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp CCCCH--------------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cccCc--------------hhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 10000 011234567889999999999999999999984
No 240
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=4.1e-38 Score=355.10 Aligned_cols=251 Identities=24% Similarity=0.330 Sum_probs=201.8
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhh-------------HHHHHHHHHHHHHHhccCCccceeee
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLE-------------RAFRSFDSECEVLRNVRHRNLIKILS 564 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-------------~~~~~~~~e~~~l~~l~h~niv~l~~ 564 (791)
..++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|+.++++++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 3578999999999999999999975 688999999865421 23567889999999999999999999
Q ss_pred eeccCCeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCC---cE
Q 003855 565 SCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENM---AA 641 (791)
Q Consensus 565 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~---~~ 641 (791)
++.++...++||||+++|+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++ .+
T Consensus 114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH----~~~ivH~Dlkp~Nil~~~~~~~~~~ 188 (504)
T 3q5i_A 114 VFEDKKYFYLVTEFYEGGELFEQIINRH-KFDECDAANIMKQILSGICYLH----KHNIVHRDIKPENILLENKNSLLNI 188 (504)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEESSTTCCSSE
T ss_pred EEEcCCEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeEeCCCcHHHEEEecCCCCccE
Confidence 9999999999999999999999997654 3899999999999999999999 67899999999999999776 69
Q ss_pred EEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHh
Q 003855 642 HVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKES 721 (791)
Q Consensus 642 kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 721 (791)
||+|||+|+.+.... ......||+.|+|||++. +.++.++||||+||++|+|++|..||.+.... .....+...
T Consensus 189 kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~~ 262 (504)
T 3q5i_A 189 KIVDFGLSSFFSKDY---KLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQ--DIIKKVEKG 262 (504)
T ss_dssp EECCCTTCEECCTTS---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHC
T ss_pred EEEECCCCEEcCCCC---ccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHcC
Confidence 999999998775432 223356999999999886 46999999999999999999999999763221 111111110
Q ss_pred cCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 722 LPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 722 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
... ...+....++.++.+++.+||+.||++|||+.|+++
T Consensus 263 ~~~--------------~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 263 KYY--------------FDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp CCC--------------CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCC--------------CCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 000 001112245677889999999999999999999975
No 241
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=1.3e-38 Score=343.36 Aligned_cols=262 Identities=23% Similarity=0.285 Sum_probs=183.7
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccC------C
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNP------D 570 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~ 570 (791)
.++|+..+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+.++++++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 478999999999999999999864 78999999986532 34456788999999999999999999998654 5
Q ss_pred eeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 571 FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 571 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
..++|+||+ +++|.+++... .+++..+..++.||++||+||| +.+|+||||||+||+++.++.+||+|||+|+
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH----~~givH~Dlkp~NIll~~~~~~kL~DFG~a~ 180 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKCQ--KLTDDHVQFLIYQILRGLKYIH----SADIIHRDLKPSNLAVNEDCELKILDFGLAR 180 (367)
T ss_dssp CCEEEEECC-CEECC-----C--CCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTCCEEECC-----
T ss_pred eEEEEeccc-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH----HCCeeeCCCCHhhEEECCCCCEEEeeccccc
Confidence 679999999 78999998763 4899999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCcceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC---h
Q 003855 651 LLGEGEDSVTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG---L 726 (791)
Q Consensus 651 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~---~ 726 (791)
..... ....+||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.... ..+........... .
T Consensus 181 ~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~l~~i~~~~g~p~~~~~ 254 (367)
T 2fst_X 181 HTADE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHI-DQLKLILRLVGTPGAELL 254 (367)
T ss_dssp ---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCSCCHHHH
T ss_pred ccccc-----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCCHHHH
Confidence 65432 233568999999998876 67999999999999999999999999763221 11111111111100 0
Q ss_pred hhhcchhhhhh--------HHh-hHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 727 TEVVDANLVRE--------EQA-FSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 727 ~~~~d~~~~~~--------~~~-~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+........ ... ......++..+.+++.+||+.||++|||+.|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~ 311 (367)
T 2fst_X 255 KKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 311 (367)
T ss_dssp TTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence 00000000000 000 0001134567889999999999999999999986
No 242
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=4.9e-38 Score=328.49 Aligned_cols=244 Identities=20% Similarity=0.296 Sum_probs=198.2
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCeeeE
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l 574 (791)
..++|++.+.||+|+||.||+|+.. +++.||||++.... ......+.+|+..+.++ +||||+++++++.+++..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l 88 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI 88 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence 4578999999999999999999976 79999999987532 33456788899999999 99999999999999999999
Q ss_pred EEecCCCCCHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCC-------------
Q 003855 575 VLEFMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDEN------------- 638 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~------------- 638 (791)
||||+++|+|.+++... ...+++..+..++.||+.||+||| +.+|+||||||+||+++.+
T Consensus 89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH----~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~ 164 (289)
T 1x8b_A 89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH----SMSLVHMDIKPSNIFISRTSIPNAASEEGDED 164 (289)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEC---------------
T ss_pred EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH----hCCEeecCCCHHHEEEcCCCCCcccccccccc
Confidence 99999999999999853 245899999999999999999999 6789999999999999844
Q ss_pred ------CcEEEeeeccccccCCCCCcceeecccccccccCCCccCCC-CCCccccHHhHHHHHHHHHhCCCCCCccccCc
Q 003855 639 ------MAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE 711 (791)
Q Consensus 639 ------~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~ 711 (791)
..+||+|||.++...... ...||+.|+|||.+.+. .++.++|||||||++|||++|.+|+...
T Consensus 165 ~~~~~~~~~kl~Dfg~~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~---- 234 (289)
T 1x8b_A 165 DWASNKVMFKIGDLGHVTRISSPQ------VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG---- 234 (289)
T ss_dssp -----CCCEEECCCTTCEETTCSC------CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS----
T ss_pred cccCCceEEEEcccccccccCCcc------ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch----
Confidence 479999999998765432 23589999999988765 6778999999999999999998876431
Q ss_pred chHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 712 MSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
...........+. .+..++..+.+++.+||+.||++|||+.|+++
T Consensus 235 ~~~~~~~~~~~~~------------------~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 235 DQWHEIRQGRLPR------------------IPQVLSQEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp HHHHHHHTTCCCC------------------CSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hHHHHHHcCCCCC------------------CCcccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 1111111110000 01124466889999999999999999999975
No 243
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=333.14 Aligned_cols=251 Identities=23% Similarity=0.302 Sum_probs=200.0
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh----hHHHHHHHHHHHHHHhccCCccceeeeee--ccCCee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL----ERAFRSFDSECEVLRNVRHRNLIKILSSC--SNPDFK 572 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~--~~~~~~ 572 (791)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.++++++||||+++++++ .+....
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 468999999999999999999974 78999999997653 23457789999999999999999999998 445678
Q ss_pred eEEEecCCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccc
Q 003855 573 ALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKL 651 (791)
Q Consensus 573 ~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~ 651 (791)
++||||+++| +.+++... ...+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++..
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH----~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~ 158 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH----SQGIVHKDIKPGNLLLTTGGTLKISALGVAEA 158 (305)
T ss_dssp EEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHH----HCCeeecCCCcccEEEcCCCcEEeeccccccc
Confidence 9999999876 77777643 445899999999999999999999 67899999999999999999999999999988
Q ss_pred cCCCCCcceeecccccccccCCCccCCCC--CCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhh
Q 003855 652 LGEGEDSVTQTMTMATIGYMAPEYGSEGI--VSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEV 729 (791)
Q Consensus 652 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~--~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (791)
..............|++.|+|||+..+.. ++.++||||||+++|||++|+.||..... ......+....
T Consensus 159 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~i~~~~------- 229 (305)
T 2wtk_C 159 LHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNI--YKLFENIGKGS------- 229 (305)
T ss_dssp CCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHCC-------
T ss_pred cCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchH--HHHHHHHhcCC-------
Confidence 75544333444557899999999887543 47899999999999999999999975221 11111111100
Q ss_pred cchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHH
Q 003855 730 VDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAK 775 (791)
Q Consensus 730 ~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~ 775 (791)
...+..++..+.+++.+||+.||++||++.|+++.
T Consensus 230 -----------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 230 -----------YAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp -----------CCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred -----------CCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 00111345678899999999999999999999863
No 244
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=1.2e-38 Score=368.29 Aligned_cols=259 Identities=21% Similarity=0.358 Sum_probs=208.4
Q ss_pred HhhccccccccCCCcceEEEEEEec----CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeee
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS----DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKA 573 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 573 (791)
..++|++.+.||+|+||.||+|.+. .+..||||++.... ....+.+.+|+.++++++||||+++++++.+ +..+
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~-~~~~ 466 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-NPVW 466 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-CceE
Confidence 3478999999999999999999874 25679999986543 3445778999999999999999999999854 5689
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccC
Q 003855 574 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLG 653 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~ 653 (791)
+||||+++|+|.+++......+++..+..++.|++.||.||| +.+|+||||||+|||++.++.+||+|||+|+...
T Consensus 467 lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~ 542 (656)
T 2j0j_A 467 IIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLE----SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME 542 (656)
T ss_dssp EEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCC
T ss_pred EEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH----hCCccccccchHhEEEeCCCCEEEEecCCCeecC
Confidence 999999999999999977667999999999999999999999 6789999999999999999999999999998765
Q ss_pred CCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhhhcch
Q 003855 654 EGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDA 732 (791)
Q Consensus 654 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 732 (791)
.... .......+|+.|+|||++.+..++.++|||||||++|||++ |..||.+.... .....+.....
T Consensus 543 ~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~--~~~~~i~~~~~--------- 610 (656)
T 2j0j_A 543 DSTY-YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIGRIENGER--------- 610 (656)
T ss_dssp C-----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHHTCC---------
T ss_pred CCcc-eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHH--HHHHHHHcCCC---------
Confidence 4322 22233456789999999988899999999999999999997 99999763221 11111111100
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003855 733 NLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVK 782 (791)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~ 782 (791)
.+.+..++..+.+++.+||+.||++||++.|+++.|+++...
T Consensus 611 --------~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~ 652 (656)
T 2j0j_A 611 --------LPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652 (656)
T ss_dssp --------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --------CCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 011124557788999999999999999999999999998654
No 245
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=5.6e-38 Score=329.73 Aligned_cols=252 Identities=26% Similarity=0.321 Sum_probs=204.2
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---------hHHHHHHHHHHHHHHhcc-CCccceeeeeec
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---------ERAFRSFDSECEVLRNVR-HRNLIKILSSCS 567 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---------~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~ 567 (791)
..++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.+++++. ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 3578999999999999999999975 78999999986432 233567889999999995 999999999999
Q ss_pred cCCeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeec
Q 003855 568 NPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFG 647 (791)
Q Consensus 568 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfg 647 (791)
+....++||||+++|+|.+++.... .+++..+..++.|++.||.||| +.+++||||||+||+++.++.+||+|||
T Consensus 95 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~kl~dfg 169 (298)
T 1phk_A 95 TNTFFFLVFDLMKKGELFDYLTEKV-TLSEKETRKIMRALLEVICALH----KLNIVHRDLKPENILLDDDMNIKLTDFG 169 (298)
T ss_dssp CSSEEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred cCCeEEEEEeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCCcceEEEcCCCcEEEeccc
Confidence 9999999999999999999998653 4899999999999999999999 6789999999999999999999999999
Q ss_pred cccccCCCCCcceeecccccccccCCCccC------CCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHh
Q 003855 648 ISKLLGEGEDSVTQTMTMATIGYMAPEYGS------EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKES 721 (791)
Q Consensus 648 la~~~~~~~~~~~~~~~~g~~~y~aPE~~~------~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 721 (791)
++........ .....|++.|+|||++. ...++.++||||||+++|||++|+.||..... ......+...
T Consensus 170 ~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~ 244 (298)
T 1phk_A 170 FSCQLDPGEK---LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ--MLMLRMIMSG 244 (298)
T ss_dssp TCEECCTTCC---BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHT
T ss_pred chhhcCCCcc---cccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccH--HHHHHHHhcC
Confidence 9987654332 23346899999999764 56688999999999999999999999965321 1111111111
Q ss_pred cCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 722 LPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 722 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..... .+....++..+.+++.+||+.||++|||+.|+++
T Consensus 245 ~~~~~--------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 245 NYQFG--------------SPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp CCCCC--------------TTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred CcccC--------------cccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 00000 0111234567889999999999999999999975
No 246
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=7.7e-38 Score=338.77 Aligned_cols=262 Identities=21% Similarity=0.230 Sum_probs=192.7
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCC------
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPD------ 570 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------ 570 (791)
.++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|+.+++.++||||+++++++....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 468999999999999999999865 78999999987532 344567889999999999999999999987654
Q ss_pred eeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 571 FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 571 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
..++||||++ |+|.+++.. .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+
T Consensus 104 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~lH----~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 175 (371)
T 2xrw_A 104 DVYIVMELMD-ANLCQVIQM---ELDHERMSYLLYQMLCGIKHLH----SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 175 (371)
T ss_dssp EEEEEEECCS-EEHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTSCEEECCCCC--
T ss_pred ceEEEEEcCC-CCHHHHHhh---ccCHHHHHHHHHHHHHHHHHHH----HCCeecccCCHHHEEEcCCCCEEEEEeeccc
Confidence 7899999996 588888863 3889999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhh-
Q 003855 651 LLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEV- 729 (791)
Q Consensus 651 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~- 729 (791)
...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+....+ .+...+ ........+.
T Consensus 176 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~-~~~~~~~~~~~ 250 (371)
T 2xrw_A 176 TAGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHID-QWNKVI-EQLGTPCPEFM 250 (371)
T ss_dssp -----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHH-C-CCCCCHHHH
T ss_pred cccccc---ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHH-HHhCCCCHHHH
Confidence 754321 2233568999999999999899999999999999999999999997632211 111111 0000000000
Q ss_pred --cchhhhhh---------------------HHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 730 --VDANLVRE---------------------EQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 730 --~d~~~~~~---------------------~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
+.+..... ..........+..+.+++.+||+.||++|||+.|+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~ 318 (371)
T 2xrw_A 251 KKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ 318 (371)
T ss_dssp TTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence 00000000 0000112234677899999999999999999999986
No 247
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=1.6e-38 Score=357.17 Aligned_cols=250 Identities=26% Similarity=0.373 Sum_probs=205.5
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.++++++||||+++++++.+....++|
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 468999999999999999999975 78999999986542 33457789999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEe---CCCCcEEEeeecccccc
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILL---DENMAAHVSDFGISKLL 652 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill---~~~~~~kl~Dfgla~~~ 652 (791)
|||+.+|+|.+++..... +++..+..++.||+.||.||| +.+|+||||||+||++ +.++.+||+|||+|+.+
T Consensus 105 ~e~~~~~~L~~~~~~~~~-~~~~~~~~i~~qi~~~l~~lH----~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~ 179 (484)
T 3nyv_A 105 GEVYTGGELFDEIISRKR-FSEVDAARIIRQVLSGITYMH----KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHF 179 (484)
T ss_dssp ECCCCSCBHHHHHHTCSC-CBHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHB
T ss_pred EecCCCCCHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHH----HCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEc
Confidence 999999999999986544 899999999999999999999 6789999999999999 56789999999999877
Q ss_pred CCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcch
Q 003855 653 GEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDA 732 (791)
Q Consensus 653 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 732 (791)
..... ....+||+.|+|||++.+ .++.++||||+||++|||++|+.||..... ......+.......
T Consensus 180 ~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~~~~~~------- 246 (484)
T 3nyv_A 180 EASKK---MKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANE--YDILKKVEKGKYTF------- 246 (484)
T ss_dssp CCCCS---HHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCCCCC-------
T ss_pred ccccc---cccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHcCCCCC-------
Confidence 54332 233569999999998865 689999999999999999999999976322 11111111110000
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 733 NLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+....++..+.+++.+||+.||++|||+.|+++
T Consensus 247 -------~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 247 -------ELPQWKKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp -------CSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred -------CCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 01112245567889999999999999999999986
No 248
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5e-39 Score=345.70 Aligned_cols=254 Identities=24% Similarity=0.280 Sum_probs=200.8
Q ss_pred hhccccccccCCCcceEEEEEEe----cCCcEEEEEEeehhh----hHHHHHHHHHHHHHHhc-cCCccceeeeeeccCC
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI----SDGTDVAIKIFNLQL----ERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPD 570 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~----~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~ 570 (791)
.++|++.+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+.+++++ +||||+++++++.+..
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 36899999999999999999987 378999999986432 12334567799999999 6999999999999999
Q ss_pred eeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 571 FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 571 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
..++||||+++|+|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 133 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH----~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~ 207 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVLALEHLH----KLGIIYRDIKLENILLDSNGHVVLTDFGLSK 207 (355)
T ss_dssp EEEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTSCEEESCSSEEE
T ss_pred eEEEEeecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCCHHHEEECCCCcEEEeeCCCCe
Confidence 9999999999999999998654 3899999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCcceeecccccccccCCCccCC--CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhh
Q 003855 651 LLGEGEDSVTQTMTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTE 728 (791)
Q Consensus 651 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~--~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (791)
.+..... ......+||+.|+|||++.+ ..++.++|||||||++|||++|+.||....... ....+.......
T Consensus 208 ~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~-~~~~~~~~~~~~---- 281 (355)
T 1vzo_A 208 EFVADET-ERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKN-SQAEISRRILKS---- 281 (355)
T ss_dssp ECCGGGG-GGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCC-CHHHHHHHHHHC----
T ss_pred ecccCCC-CcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccc-hHHHHHHHHhcc----
Confidence 7643222 12233569999999999875 457899999999999999999999997532221 111111110000
Q ss_pred hcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCC-----CHHHHHHH
Q 003855 729 VVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRI-----NVTDAAAK 775 (791)
Q Consensus 729 ~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RP-----t~~ev~~~ 775 (791)
..+.+..++..+.+++.+||+.||++|| ++.|+++.
T Consensus 282 -----------~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h 322 (355)
T 1vzo_A 282 -----------EPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 322 (355)
T ss_dssp -----------CCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred -----------CCCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence 0001123446678999999999999999 99998764
No 249
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=6.1e-38 Score=345.51 Aligned_cols=197 Identities=25% Similarity=0.310 Sum_probs=171.8
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhc------cCCccceeeeeeccCCee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNV------RHRNLIKILSSCSNPDFK 572 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l------~h~niv~l~~~~~~~~~~ 572 (791)
..+|++.+.||+|+||.||+|... +++.||||++.... ...+.+.+|+.+++.+ .|+||+++++++......
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 174 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI 174 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence 467999999999999999999865 68999999997543 3345677888888887 577999999999999999
Q ss_pred eEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCc--EEEeeeccc
Q 003855 573 ALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMA--AHVSDFGIS 649 (791)
Q Consensus 573 ~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~--~kl~Dfgla 649 (791)
++||||+. |+|.+++.... ..+++..+..++.||+.||+||| +.+|+||||||+|||++.++. +||+|||+|
T Consensus 175 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a 249 (429)
T 3kvw_A 175 CMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALH----KNRIIHCDLKPENILLKQQGRSGIKVIDFGSS 249 (429)
T ss_dssp EEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH----HHTEECSCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred EEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH----HCCeecCCCCHHHeEEccCCCcceEEeecccc
Confidence 99999995 69999998654 35899999999999999999999 668999999999999999887 999999999
Q ss_pred cccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCcc
Q 003855 650 KLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 707 (791)
Q Consensus 650 ~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~ 707 (791)
+..... ....+||+.|+|||++.+..++.++|||||||++|||+||+.||.+.
T Consensus 250 ~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~ 302 (429)
T 3kvw_A 250 CYEHQR-----VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE 302 (429)
T ss_dssp EETTCC-----CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eecCCc-----ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence 765432 22346899999999999889999999999999999999999999764
No 250
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=2e-38 Score=367.40 Aligned_cols=249 Identities=22% Similarity=0.247 Sum_probs=204.0
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCeee
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDFKA 573 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~ 573 (791)
..++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+..|..++..+ +||+|+++++++.+.+..+
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 4578999999999999999999975 68899999997642 33456778899999987 7999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccC
Q 003855 574 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLG 653 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~ 653 (791)
+||||+++|+|.+++...+. +++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+...
T Consensus 419 lV~E~~~gg~L~~~l~~~~~-~~~~~~~~~~~qi~~aL~~LH----~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~ 493 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQVGR-FKEPHAVFYAAEIAIGLFFLQ----SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI 493 (674)
T ss_dssp EEEECCCSCBHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHH----HTSEECCCCCSTTEEECSSSCEEECCCTTCEECC
T ss_pred EEEeCcCCCcHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHH----hCCeEeccCChhhEEEcCCCcEEEeecceeeccc
Confidence 99999999999999986543 899999999999999999999 6789999999999999999999999999998643
Q ss_pred CCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchh
Q 003855 654 EGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDAN 733 (791)
Q Consensus 654 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 733 (791)
.... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+... ..+.+.+. ....
T Consensus 494 ~~~~--~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~--~~~~~~i~---~~~~------- 559 (674)
T 3pfq_A 494 WDGV--TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--DELFQSIM---EHNV------- 559 (674)
T ss_dssp CTTC--CBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHH---SSCC-------
T ss_pred cCCc--ccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH--HHHHHHHH---hCCC-------
Confidence 3222 23345799999999999999999999999999999999999999976321 11111111 1100
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCH-----HHHHH
Q 003855 734 LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINV-----TDAAA 774 (791)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~-----~ev~~ 774 (791)
..+..++.++.+++.+||+.||++||++ .||++
T Consensus 560 --------~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~ 597 (674)
T 3pfq_A 560 --------AYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 597 (674)
T ss_dssp --------CCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHS
T ss_pred --------CCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhc
Confidence 0011345668899999999999999997 66653
No 251
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.1e-38 Score=344.98 Aligned_cols=272 Identities=21% Similarity=0.259 Sum_probs=199.6
Q ss_pred HHHhhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeecc-------
Q 003855 497 QRATDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSN------- 568 (791)
Q Consensus 497 ~~~~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------- 568 (791)
....++|++.+.||+|+||.||+|+. .+|+.||||++..... ...+|+.+++.++||||+++++++..
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~ 78 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK 78 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence 34567899999999999999999986 4799999999865432 22369999999999999999999843
Q ss_pred -------------------------------CCeeeEEEecCCCCCHHHHHh---hCCCCCCHHHHHHHHHHHHHHHHHH
Q 003855 569 -------------------------------PDFKALVLEFMPNGSLEKWLY---SHNYFLDILERLNIMIDVGSALEYL 614 (791)
Q Consensus 569 -------------------------------~~~~~lv~e~~~~g~L~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~L 614 (791)
....++||||++ |+|.+.+. .....+++..+..++.||++||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~L 157 (383)
T 3eb0_A 79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFI 157 (383)
T ss_dssp -------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 334789999997 58888776 3445699999999999999999999
Q ss_pred HccCCCCCeEecCCCCCCeEeC-CCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCC-CCCccccHHhHHH
Q 003855 615 HHGHSSAPIIHCDLKPTNILLD-ENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEG-IVSAKCDVYSYGV 692 (791)
Q Consensus 615 H~~~~~~~i~H~dlk~~Nill~-~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~Dv~s~G~ 692 (791)
| +.+|+||||||+||+++ .++.+||+|||+|+.+..... .....+|+.|+|||.+.+. .++.++||||+||
T Consensus 158 H----~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~ 230 (383)
T 3eb0_A 158 H----SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP---SVAYICSRFYRAPELMLGATEYTPSIDLWSIGC 230 (383)
T ss_dssp H----TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC---CCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHH
T ss_pred H----HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC---CcCcccCCCccCHHHhcCCCCCCcchhhhhHHH
Confidence 9 78999999999999998 689999999999987654332 2234689999999987664 5899999999999
Q ss_pred HHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcc----------hhhhhhHHhhHHHHHHHHHHHHHHhhccccC
Q 003855 693 LLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVD----------ANLVREEQAFSAKMDCILSIMDLALDCCIES 762 (791)
Q Consensus 693 vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d----------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~ 762 (791)
++|||++|+.||.+.... ..+...+..........+.. +......-....+..++..+.+++.+||+.|
T Consensus 231 il~ell~g~~pf~~~~~~-~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d 309 (383)
T 3eb0_A 231 VFGELILGKPLFSGETSI-DQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYE 309 (383)
T ss_dssp HHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSS
T ss_pred HHHHHHhCCCCCCCCChH-HHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCC
Confidence 999999999999763221 12222222111111000000 0000000000111235567889999999999
Q ss_pred CCCCCCHHHHHH--HHHHHHH
Q 003855 763 PDMRINVTDAAA--KLKKIKV 781 (791)
Q Consensus 763 P~~RPt~~ev~~--~L~~~~~ 781 (791)
|++|||+.|+++ .+..++.
T Consensus 310 P~~R~t~~e~l~hp~f~~~~~ 330 (383)
T 3eb0_A 310 PDLRINPYEAMAHPFFDHLRN 330 (383)
T ss_dssp GGGSCCHHHHHTSGGGHHHHH
T ss_pred hhhCCCHHHHhcCHHHHHHHh
Confidence 999999999984 3444443
No 252
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=5.2e-38 Score=333.56 Aligned_cols=266 Identities=20% Similarity=0.267 Sum_probs=196.0
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeec-----------
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCS----------- 567 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~----------- 567 (791)
.++|++.+.||+|+||.||+|+.. +++.||||++........+.+.+|+.++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 368999999999999999999976 58999999988766666788999999999999999999998873
Q ss_pred ---cCCeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeC-CCCcEEE
Q 003855 568 ---NPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLD-ENMAAHV 643 (791)
Q Consensus 568 ---~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~-~~~~~kl 643 (791)
+....++||||++ |+|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++ +++.+||
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~~kl 162 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQG--PLLEEHARLFMYQLLRGLKYIH----SANVLHRDLKPANLFINTEDLVLKI 162 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCSGGGEEEETTTTEEEE
T ss_pred cccccCceeEEeeccC-CCHHHHhhcC--CccHHHHHHHHHHHHHHHHHHH----hCCEecCCCCHHHEEEcCCCCeEEE
Confidence 4467899999997 6999999754 3889999999999999999999 67899999999999997 6779999
Q ss_pred eeeccccccCCCCCc-ceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHh
Q 003855 644 SDFGISKLLGEGEDS-VTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKES 721 (791)
Q Consensus 644 ~Dfgla~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 721 (791)
+|||+++........ .......++..|+|||.+.+ ..++.++|||||||++|||++|+.||...... ..... +...
T Consensus 163 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~-~~~~~-~~~~ 240 (320)
T 2i6l_A 163 GDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHEL-EQMQL-ILES 240 (320)
T ss_dssp CCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHH-HHHH
T ss_pred ccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHH-HHHHH-HHHh
Confidence 999999876433211 12233457899999997654 77899999999999999999999999764321 11111 1111
Q ss_pred cCCChh----hh---cchhhhhhH-----HhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 722 LPHGLT----EV---VDANLVREE-----QAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 722 ~~~~~~----~~---~d~~~~~~~-----~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.+.... +. +........ ........++.++.+++.+||+.||++|||+.|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 241 IPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp SCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred cCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 111100 00 000000000 000011235678899999999999999999999986
No 253
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=345.39 Aligned_cols=261 Identities=23% Similarity=0.372 Sum_probs=199.8
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 577 (791)
.++|++.+.||+|+||.||+|+.++ .||+|++.... ....+.+.+|+.++++++||||+++++++.+....++|||
T Consensus 32 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e 109 (319)
T 2y4i_B 32 FEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITS 109 (319)
T ss_dssp CSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECB
T ss_pred HHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEee
Confidence 4789999999999999999999753 59999986542 2233457789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCC
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGED 657 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~ 657 (791)
|+++++|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++ ++.+||+|||+++.......
T Consensus 110 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH----~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~ 184 (319)
T 2y4i_B 110 LCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLH----AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQA 184 (319)
T ss_dssp CCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHH----HTTCCCCCCCSTTEEEC---CCEECCCSCCC-------
T ss_pred cccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----hCCccccCCChhhEEEe-CCCEEEeecCCccccccccc
Confidence 99999999999877667899999999999999999999 67899999999999998 67999999999876532211
Q ss_pred ---cceeecccccccccCCCccCC---------CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC
Q 003855 658 ---SVTQTMTMATIGYMAPEYGSE---------GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG 725 (791)
Q Consensus 658 ---~~~~~~~~g~~~y~aPE~~~~---------~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 725 (791)
........|++.|+|||.+.. ..++.++||||||+++|||++|+.||...... .....+.......
T Consensus 185 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~--~~~~~~~~~~~~~ 262 (319)
T 2y4i_B 185 GRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAE--AIIWQMGTGMKPN 262 (319)
T ss_dssp ---CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHH--HHHHHHHTTCCCC
T ss_pred cccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHhccCCCCC
Confidence 112233458999999998764 45789999999999999999999999753221 1111111100000
Q ss_pred hhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHhcc
Q 003855 726 LTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKFLD 785 (791)
Q Consensus 726 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~~~ 785 (791)
. ....++.++.+++.+||+.||++|||+.++++.|+++..+...
T Consensus 263 ~----------------~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~~ 306 (319)
T 2y4i_B 263 L----------------SQIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNRR 306 (319)
T ss_dssp C----------------CCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC------
T ss_pred C----------------CcCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhhcc
Confidence 0 0012345577999999999999999999999999998766543
No 254
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=4.5e-38 Score=344.81 Aligned_cols=264 Identities=21% Similarity=0.243 Sum_probs=201.4
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhcc--------CCccceeeeeec---
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVR--------HRNLIKILSSCS--- 567 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~--------h~niv~l~~~~~--- 567 (791)
.++|++.+.||+|+||.||+|+.. +++.||||++... ....+.+.+|+.++++++ ||||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 478999999999999999999864 7889999998754 334567888999999985 788999999987
Q ss_pred -cCCeeeEEEecCCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccCCCC-CeEecCCCCCCeEeCCCC-----
Q 003855 568 -NPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLHHGHSSA-PIIHCDLKPTNILLDENM----- 639 (791)
Q Consensus 568 -~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-~i~H~dlk~~Nill~~~~----- 639 (791)
+....++||||+ +|++.+++... ...+++..+..++.||+.||+||| +. +|+||||||+|||++.++
T Consensus 115 ~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH----~~~givHrDikp~NIll~~~~~~~~~ 189 (397)
T 1wak_A 115 VNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLH----TKCRIIHTDIKPENILLSVNEQYIRR 189 (397)
T ss_dssp TTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH----HTTCEECCCCSGGGEEECCCHHHHHH
T ss_pred CCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH----HhCCEecCCCCHHHeeEeccchhhhh
Confidence 567889999999 66777776644 356899999999999999999999 55 899999999999999775
Q ss_pred --------------------------------------------cEEEeeeccccccCCCCCcceeecccccccccCCCc
Q 003855 640 --------------------------------------------AAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEY 675 (791)
Q Consensus 640 --------------------------------------------~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~ 675 (791)
.+||+|||+|+..... ....+||+.|+|||+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y~aPE~ 264 (397)
T 1wak_A 190 LAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQYRSLEV 264 (397)
T ss_dssp HHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGGCCHHH
T ss_pred hhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCCcccCChh
Confidence 7999999999876432 233468999999999
Q ss_pred cCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcch----HHHHHHHhcCCChhh----------hcch---------
Q 003855 676 GSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMS----LRRWVKESLPHGLTE----------VVDA--------- 732 (791)
Q Consensus 676 ~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~----~~~~~~~~~~~~~~~----------~~d~--------- 732 (791)
+.+..++.++|||||||++|||+||+.||......+.. ....+.......... ....
T Consensus 265 ~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (397)
T 1wak_A 265 LIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITK 344 (397)
T ss_dssp HHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCC
T ss_pred hcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccc
Confidence 98888999999999999999999999999764332211 111111111100000 0000
Q ss_pred ----hhhh-hHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 733 ----NLVR-EEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 733 ----~~~~-~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.+.. ..........++..+.+++.+||+.||++|||+.|+++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 345 LKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp CCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred cCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 0000 00011122456778999999999999999999999985
No 255
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=2.6e-38 Score=332.42 Aligned_cols=266 Identities=24% Similarity=0.300 Sum_probs=201.7
Q ss_pred hccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEEe
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 577 (791)
++|+..+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 67999999999999999999975 78999999986543 2234678889999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCC
Q 003855 578 FMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~ 656 (791)
|++ |+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 83 ~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~ 157 (299)
T 2r3i_A 83 FLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH----SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV 157 (299)
T ss_dssp CCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS
T ss_pred ccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHH----HCCccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc
Confidence 997 69999998653 45899999999999999999999 6789999999999999999999999999998764332
Q ss_pred CcceeecccccccccCCCccCCCC-CCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC---hhhh---
Q 003855 657 DSVTQTMTMATIGYMAPEYGSEGI-VSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG---LTEV--- 729 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~~~~~-~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~--- 729 (791)
. ......+|+.|+|||.+.+.. ++.++||||||+++|||+||+.||...... ....+......... ....
T Consensus 158 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 234 (299)
T 2r3i_A 158 R--TYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI-DQLFRIFRTLGTPDEVVWPGVTSM 234 (299)
T ss_dssp B--CTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCCTTTSTTGGGS
T ss_pred c--ccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHH-HHHHHHHHHhCCCchhhhhHhhcC
Confidence 1 222346899999999887655 799999999999999999999999763221 11222222111100 0000
Q ss_pred --cchhhhhh--HHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 730 --VDANLVRE--EQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 730 --~d~~~~~~--~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+.+... .........++.++.+++.+|++.||++|||+.|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 235 PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp TTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred cccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 00000000 0000011134567889999999999999999999986
No 256
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=8e-38 Score=329.29 Aligned_cols=253 Identities=24% Similarity=0.320 Sum_probs=193.9
Q ss_pred HhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeecc---------
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSN--------- 568 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--------- 568 (791)
..++|++.+.||+|+||.||+|+.. +++.||||++... ....+.+.+|+.++++++||||+++++++.+
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 82 (303)
T 1zy4_A 4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT 82 (303)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence 3578999999999999999999974 7899999998654 3445778899999999999999999998754
Q ss_pred ----CCeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEe
Q 003855 569 ----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVS 644 (791)
Q Consensus 569 ----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~ 644 (791)
....++||||+++|+|.+++......+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+
T Consensus 83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH----~~~i~H~dlkp~Nil~~~~~~~kl~ 158 (303)
T 1zy4_A 83 AVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIH----SQGIIHRDLKPMNIFIDESRNVKIG 158 (303)
T ss_dssp ---CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTSCEEEC
T ss_pred ccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHH----hCCeecccCCHHhEEEcCCCCEEEe
Confidence 45678999999999999999977767889999999999999999999 6789999999999999999999999
Q ss_pred eeccccccCCCCC------------cceeecccccccccCCCccCCC-CCCccccHHhHHHHHHHHHhCCCCCCccccCc
Q 003855 645 DFGISKLLGEGED------------SVTQTMTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE 711 (791)
Q Consensus 645 Dfgla~~~~~~~~------------~~~~~~~~g~~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~ 711 (791)
|||+++....... ........|++.|+|||.+.+. .++.++|||||||++|||++ ||.......
T Consensus 159 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~~ 235 (303)
T 1zy4_A 159 DFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMERV 235 (303)
T ss_dssp CCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHHH
T ss_pred eCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhHH
Confidence 9999987643211 1122334689999999988754 78999999999999999998 554211111
Q ss_pred chHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 712 MSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
. ....+.... ..... . ....++..+.+++.+||+.||++|||+.|+++
T Consensus 236 ~-~~~~~~~~~-~~~~~----~---------~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 236 N-ILKKLRSVS-IEFPP----D---------FDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp H-HHHHHHSTT-CCCCT----T---------CCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred H-HHHhccccc-cccCc----c---------ccccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence 1 111111100 00000 0 01133456789999999999999999999986
No 257
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=1.2e-37 Score=335.63 Aligned_cols=267 Identities=24% Similarity=0.248 Sum_probs=200.7
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccC-----Cee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNP-----DFK 572 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~ 572 (791)
.++|++.+.||+|+||.||+|+.. +|+.||||++.... ......+.+|+.++++++||||+++++++... ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 478999999999999999999975 78999999986433 34456788999999999999999999987653 678
Q ss_pred eEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccccc
Q 003855 573 ALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLL 652 (791)
Q Consensus 573 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~ 652 (791)
++||||++ |+|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 90 ~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~L~~LH----~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~ 162 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQ--MLSDDHIQYFIYQTLRAVKVLH----GSNVIHRDLKPSNLLINSNCDLKVCDFGLARII 162 (353)
T ss_dssp EEEECCCS-EEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEEeccC-ccHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHH----HCCeecCCCCHHHeEEcCCCcEEEEeccccccc
Confidence 99999996 6999999874 3899999999999999999999 678999999999999999999999999999876
Q ss_pred CCCCCcc--------eeecccccccccCCCccC-CCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcC
Q 003855 653 GEGEDSV--------TQTMTMATIGYMAPEYGS-EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLP 723 (791)
Q Consensus 653 ~~~~~~~--------~~~~~~g~~~y~aPE~~~-~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 723 (791)
....... ......||+.|+|||++. +..++.++|||||||++|||++|+.||.+....+ .+.........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~ 241 (353)
T 2b9h_A 163 DESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRH-QLLLIFGIIGT 241 (353)
T ss_dssp C----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCC
T ss_pred ccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHhCC
Confidence 5432111 122346899999999764 4779999999999999999999999997632211 11111111000
Q ss_pred C----ChhhhcchhhhhhHH---------hhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 724 H----GLTEVVDANLVREEQ---------AFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 724 ~----~~~~~~d~~~~~~~~---------~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
. ............... .......++.++.+++.+||+.||++|||+.|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 242 PHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp CCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 0 000000000000000 00111245677889999999999999999999986
No 258
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.7e-38 Score=335.62 Aligned_cols=255 Identities=23% Similarity=0.322 Sum_probs=197.2
Q ss_pred HHHHHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhc-cCCccceeeeeecc----
Q 003855 495 DIQRATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNV-RHRNLIKILSSCSN---- 568 (791)
Q Consensus 495 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~---- 568 (791)
++....++|++.+.||+|+||.||+|+.. +++.||||++..... ..+.+.+|+.+++++ +||||+++++++..
T Consensus 18 ~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~ 96 (326)
T 2x7f_A 18 ALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP 96 (326)
T ss_dssp CCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--
T ss_pred hccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCc
Confidence 34445688999999999999999999974 789999999865432 346788899999999 89999999999866
Q ss_pred --CCeeeEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEee
Q 003855 569 --PDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSD 645 (791)
Q Consensus 569 --~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~D 645 (791)
....++||||+++|+|.+++.... ..+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~ivH~dlkp~NIl~~~~~~~kl~D 172 (326)
T 2x7f_A 97 GMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH----QHKVIHRDIKGQNVLLTENAEVKLVD 172 (326)
T ss_dssp CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCSGGGEEECTTCCEEECC
T ss_pred cccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH----HCCccccCCcHHHEEEcCCCCEEEee
Confidence 467899999999999999998643 45899999999999999999999 67899999999999999999999999
Q ss_pred eccccccCCCCCcceeecccccccccCCCccC-----CCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHH
Q 003855 646 FGISKLLGEGEDSVTQTMTMATIGYMAPEYGS-----EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKE 720 (791)
Q Consensus 646 fgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~-----~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~ 720 (791)
||++........ ......|++.|+|||.+. +..++.++|||||||++|||++|+.||....... ....+..
T Consensus 173 fg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~ 248 (326)
T 2x7f_A 173 FGVSAQLDRTVG--RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMR--ALFLIPR 248 (326)
T ss_dssp CTTTC---------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHH--HHHHHHH
T ss_pred CcCceecCcCcc--ccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHH--HHHHhhc
Confidence 999987643221 223346899999999876 5678999999999999999999999996532211 1111111
Q ss_pred hcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 721 SLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 721 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
...... ....++..+.+++.+||+.||++||++.|+++
T Consensus 249 ~~~~~~----------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 249 NPAPRL----------------KSKKWSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp SCCCCC----------------SCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CccccC----------------CccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 000000 01123466889999999999999999999987
No 259
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.8e-38 Score=342.69 Aligned_cols=268 Identities=21% Similarity=0.229 Sum_probs=184.1
Q ss_pred hhcccc-ccccCCCcceEEEEEEec---CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeee--ccCCeee
Q 003855 500 TDEFNE-CNLLGTGSFGSVYKGTIS---DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSC--SNPDFKA 573 (791)
Q Consensus 500 ~~~~~~-~~~ig~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~--~~~~~~~ 573 (791)
.+.|++ .++||+|+||.||+|+.. +++.||||++..... ...+.+|+.++++++||||+++++++ ......+
T Consensus 19 ~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 96 (405)
T 3rgf_A 19 EDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI--SMSACREIALLRELKHPNVISLQKVFLSHADRKVW 96 (405)
T ss_dssp HHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC--CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEE
T ss_pred hhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC--CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEE
Confidence 355766 458999999999999965 578899999875432 24677899999999999999999999 4577899
Q ss_pred EEEecCCCCCHHHHHhhC--------CCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEe----CCCCcE
Q 003855 574 LVLEFMPNGSLEKWLYSH--------NYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILL----DENMAA 641 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~~~--------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill----~~~~~~ 641 (791)
+||||++ |+|.+++... ...+++..+..++.||+.||+||| +.+|+||||||+|||+ +.++.+
T Consensus 97 lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH----~~~ivH~Dlkp~NIll~~~~~~~~~~ 171 (405)
T 3rgf_A 97 LLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH----ANWVLHRDLKPANILVMGEGPERGRV 171 (405)
T ss_dssp EEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECCSSTTTTCE
T ss_pred EEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH----hCCEeCCCcCHHHeEEecCCCCCCcE
Confidence 9999996 5888888622 224899999999999999999999 6789999999999999 778999
Q ss_pred EEeeeccccccCCCCCc-ceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccC--------c
Q 003855 642 HVSDFGISKLLGEGEDS-VTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTG--------E 711 (791)
Q Consensus 642 kl~Dfgla~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~--------~ 711 (791)
||+|||+|+.+...... ......+||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... .
T Consensus 172 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~ 251 (405)
T 3rgf_A 172 KIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHH 251 (405)
T ss_dssp EECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCH
T ss_pred EEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchH
Confidence 99999999876543221 22334578999999998876 45999999999999999999999999753221 0
Q ss_pred chHHHHHHHhcCC---Chhhhcc---h-----hhhhhHHh--------hHHHHHHHHHHHHHHhhccccCCCCCCCHHHH
Q 003855 712 MSLRRWVKESLPH---GLTEVVD---A-----NLVREEQA--------FSAKMDCILSIMDLALDCCIESPDMRINVTDA 772 (791)
Q Consensus 712 ~~~~~~~~~~~~~---~~~~~~d---~-----~~~~~~~~--------~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev 772 (791)
..+...+...... .+..+.. . .+...... .......+..+.+++.+||+.||++|||+.|+
T Consensus 252 ~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~ 331 (405)
T 3rgf_A 252 DQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQA 331 (405)
T ss_dssp HHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred HHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHH
Confidence 1122222111100 0110000 0 00000000 00000114567899999999999999999999
Q ss_pred HH
Q 003855 773 AA 774 (791)
Q Consensus 773 ~~ 774 (791)
++
T Consensus 332 L~ 333 (405)
T 3rgf_A 332 MQ 333 (405)
T ss_dssp HT
T ss_pred hc
Confidence 86
No 260
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.2e-37 Score=354.37 Aligned_cols=336 Identities=22% Similarity=0.253 Sum_probs=275.0
Q ss_pred CCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCccccccccccccccccccc
Q 003855 35 NISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSL 114 (791)
Q Consensus 35 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 114 (791)
.+.+++.|++++|.+. .+|..++..+++|++|+|++|.|+++.|..|+.+++|++|+|++|.++++.+..|+++++|+.
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4678999999999997 888887777899999999999999888889999999999999999999988888999999999
Q ss_pred cccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCC
Q 003855 115 LSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLT 194 (791)
Q Consensus 115 L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 194 (791)
|++++|.++.++... |.++++|++|+|++|.+++. .|..|.++++|+
T Consensus 128 L~L~~n~l~~l~~~~--------~~~l~~L~~L~Ls~N~l~~~-------------------------~~~~~~~l~~L~ 174 (597)
T 3oja_B 128 LVLERNDLSSLPRGI--------FHNTPKLTTLSMSNNNLERI-------------------------EDDTFQATTSLQ 174 (597)
T ss_dssp EECCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCCBC-------------------------CTTTTTTCTTCC
T ss_pred EEeeCCCCCCCCHHH--------hccCCCCCEEEeeCCcCCCC-------------------------ChhhhhcCCcCc
Confidence 999999988776544 78888999999999888754 344577788888
Q ss_pred EEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCc
Q 003855 195 LLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNK 274 (791)
Q Consensus 195 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 274 (791)
.|+|++|.+++.. +..+++|+.|++++|.+++ +...++|+.|++++|.+....+. + .++|+.|+|++|.
T Consensus 175 ~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~ 243 (597)
T 3oja_B 175 NLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNN 243 (597)
T ss_dssp EEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSC
T ss_pred EEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCC
Confidence 8888888888652 5567888888888888874 34456788888988888743322 2 3689999999999
Q ss_pred CCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcc
Q 003855 275 LTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPES 354 (791)
Q Consensus 275 l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 354 (791)
+++ +..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..
T Consensus 244 l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~ 319 (597)
T 3oja_B 244 LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERN 319 (597)
T ss_dssp CCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGG
T ss_pred CCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcc
Confidence 985 4678888999999999999988888889999999999999999984 5666777899999999999998 67888
Q ss_pred cCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCCCCCCcCCccccccCCccccCCC
Q 003855 355 VGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVKGSFKNFSVESFFGNYALCGPP 423 (791)
Q Consensus 355 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 423 (791)
+..+++|+.|+|++|++++.. +..+++|+.|++++|+++|.... ..+..+....+.++...|+.+
T Consensus 320 ~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 320 QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp HHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred cccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 888999999999999998553 66778999999999999886532 234455556677888888754
No 261
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=1.6e-37 Score=336.23 Aligned_cols=261 Identities=22% Similarity=0.256 Sum_probs=197.4
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCee----
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFK---- 572 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~---- 572 (791)
.++|...+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.+++.++||||+++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 468999999999999999999865 78999999987542 34456788999999999999999999999876654
Q ss_pred --eEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 573 --ALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 573 --~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
++||||+. |+|.+++.. .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 121 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~ 192 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMGM---EFSEEKIQYLVYQMLKGLKYIH----SAGVVHRDLKPGNLAVNEDCELKILDFGLAR 192 (371)
T ss_dssp CCEEEEECCC-EEHHHHTTS---CCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTCCEEECSTTCC-
T ss_pred eEEEEEcccc-ccHHHHhhc---CCCHHHHHHHHHHHHHHHHHHH----HCCCcCCCcCHHHeEECCCCCEEEEecCccc
Confidence 99999996 689888743 3899999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCcceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC--hh
Q 003855 651 LLGEGEDSVTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG--LT 727 (791)
Q Consensus 651 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~--~~ 727 (791)
..... .....||+.|+|||.+.+ ..++.++|||||||++|||++|+.||.+.... ..+........... ..
T Consensus 193 ~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~ 266 (371)
T 4exu_A 193 HADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYL-DQLTQILKVTGVPGTEFV 266 (371)
T ss_dssp ------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCCHHHH
T ss_pred ccccC-----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHhCCCcHHHH
Confidence 65332 233568999999998876 77999999999999999999999999763221 11222211111110 00
Q ss_pred hhcchhhhhhH----------HhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 728 EVVDANLVREE----------QAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 728 ~~~d~~~~~~~----------~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+........ ........++..+.+++.+||+.||++|||+.|+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 323 (371)
T 4exu_A 267 QKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 323 (371)
T ss_dssp TTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence 00000000000 000011234677899999999999999999999976
No 262
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=2.1e-37 Score=331.75 Aligned_cols=262 Identities=22% Similarity=0.268 Sum_probs=202.7
Q ss_pred hhccccccccCCCcceEEEEEEe--cCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCc------cceeeeeeccCCe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI--SDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRN------LIKILSSCSNPDF 571 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~l~~~~~~~~~ 571 (791)
.++|++.+.||+|+||.||+|.. .+++.||||++.... ...+.+.+|+.+++.++|++ ++++++++.+.+.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 46899999999999999999986 368899999987543 34567888999999987665 9999999999999
Q ss_pred eeEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCC-------------
Q 003855 572 KALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDE------------- 637 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~------------- 637 (791)
.++||||+ +++|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.
T Consensus 92 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~ 166 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH----SNKLTHTDLKPENILFVQSDYTEAYNPKIKR 166 (339)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEESCCCEEEEEC----C
T ss_pred EEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH----HCCCcCCCCCHHHEEEeccccccccCCcccc
Confidence 99999999 889999998654 35889999999999999999999 678999999999999987
Q ss_pred ------CCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCc
Q 003855 638 ------NMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE 711 (791)
Q Consensus 638 ------~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~ 711 (791)
++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||......+
T Consensus 167 ~~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~ 241 (339)
T 1z57_A 167 DERTLINPDIKVVDFGSATYDDEH-----HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKE 241 (339)
T ss_dssp EEEEESCCCEEECCCSSCEETTSC-----CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHH
T ss_pred ccccccCCCceEeeCcccccCccc-----cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHH
Confidence 678999999999875432 223468999999999999899999999999999999999999997632211
Q ss_pred chHHHHHHHhcCCChhhhcc--------------------------hhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCC
Q 003855 712 MSLRRWVKESLPHGLTEVVD--------------------------ANLVREEQAFSAKMDCILSIMDLALDCCIESPDM 765 (791)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~d--------------------------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~ 765 (791)
....+............. ...............++..+.+++.+||+.||++
T Consensus 242 --~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~ 319 (339)
T 1z57_A 242 --HLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAK 319 (339)
T ss_dssp --HHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTT
T ss_pred --HHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCccc
Confidence 111111111100000000 0000000000112245678999999999999999
Q ss_pred CCCHHHHHH
Q 003855 766 RINVTDAAA 774 (791)
Q Consensus 766 RPt~~ev~~ 774 (791)
|||+.|+++
T Consensus 320 Rpt~~ell~ 328 (339)
T 1z57_A 320 RITLREALK 328 (339)
T ss_dssp SCCHHHHTT
T ss_pred ccCHHHHhc
Confidence 999999975
No 263
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=2.2e-37 Score=323.10 Aligned_cols=252 Identities=25% Similarity=0.350 Sum_probs=203.9
Q ss_pred HHHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeee
Q 003855 497 QRATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKA 573 (791)
Q Consensus 497 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 573 (791)
....++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.++++++||||+++++++.+....+
T Consensus 18 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 97 (287)
T 2wei_A 18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFY 97 (287)
T ss_dssp HHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred HHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEE
Confidence 344578999999999999999999975 78999999987543 234567889999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCC---CcEEEeeecccc
Q 003855 574 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDEN---MAAHVSDFGISK 650 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~---~~~kl~Dfgla~ 650 (791)
+||||+++++|.+++.... .+++..+..++.|++.||.||| +.+++||||||+||+++.+ +.+||+|||+++
T Consensus 98 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH----~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~ 172 (287)
T 2wei_A 98 IVGELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMH----KHNIVHRDLKPENILLESKEKDCDIKIIDFGLST 172 (287)
T ss_dssp EEECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGG
T ss_pred EEEEccCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeeccCCChhhEEEecCCCcccEEEeccCcce
Confidence 9999999999999987654 3899999999999999999999 6789999999999999754 479999999998
Q ss_pred ccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHH-hcCCChhhh
Q 003855 651 LLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKE-SLPHGLTEV 729 (791)
Q Consensus 651 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~ 729 (791)
....... .....|++.|+|||.+.+ .++.++||||||+++|||++|+.||..... ......+.. .....
T Consensus 173 ~~~~~~~---~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~~---- 242 (287)
T 2wei_A 173 CFQQNTK---MKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE--YDILKRVETGKYAFD---- 242 (287)
T ss_dssp TBCCCSS---CSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCCCCCC----
T ss_pred eecCCCc---cccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCH--HHHHHHHHcCCCCCC----
Confidence 7654322 222357899999998765 489999999999999999999999976321 111111111 00000
Q ss_pred cchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 730 VDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 730 ~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.+....++.++.+++.+|++.||++|||+.|+++
T Consensus 243 -----------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 243 -----------LPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp -----------SGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred -----------chhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 0111234567889999999999999999999987
No 264
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-36 Score=331.32 Aligned_cols=335 Identities=21% Similarity=0.240 Sum_probs=280.3
Q ss_pred CCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCE
Q 003855 11 NLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVA 90 (791)
Q Consensus 11 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 90 (791)
.++++++|++++|.++.+.+..|.++++|++|+|++|+++ .+|...+..+++|++|+|++|.++++.|..|+++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4689999999999999887777899999999999999998 666544455899999999999999988999999999999
Q ss_pred EeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhh
Q 003855 91 LDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQ 170 (791)
Q Consensus 91 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 170 (791)
|+|++|+++.++...|.++++|+.|++++|+++.++.. .|..+++|++|++++|++++.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~l~~~------------- 180 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD--------TFQATTSLQNLQLSSNRLTHV------------- 180 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT--------TTSSCTTCCEEECCSSCCSBC-------------
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh--------hccCCCCCCEEECCCCcCCcc-------------
Confidence 99999999988888899999999999999999887643 388999999999999999853
Q ss_pred hhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCc
Q 003855 171 KFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNK 250 (791)
Q Consensus 171 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 250 (791)
.+..+++|+.|++++|.+++. ...++|++|++++|.++.. |.. ..++|+.|++++|.
T Consensus 181 ---------------~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~ 237 (390)
T 3o6n_A 181 ---------------DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNN 237 (390)
T ss_dssp ---------------CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSC
T ss_pred ---------------ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCC
Confidence 134567889999999988743 3446899999999999854 332 24789999999999
Q ss_pred cCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcc
Q 003855 251 LSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPST 330 (791)
Q Consensus 251 i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 330 (791)
+++. ..+..+++|++|+|++|++.+..|..|..+++|+.|+|++|++++ +|..+..+++|+.|++++|+++ .+|..
T Consensus 238 l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~ 313 (390)
T 3o6n_A 238 LTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERN 313 (390)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGG
T ss_pred Cccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcc
Confidence 9854 578999999999999999998889999999999999999999985 5666788999999999999998 67778
Q ss_pred hhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccC
Q 003855 331 IGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEI 399 (791)
Q Consensus 331 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~ 399 (791)
+..+++|+.|++++|+++. ++ +..+++|+.|++++|++.+..... -+..+....+..+...+..
T Consensus 314 ~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~~~~~--~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 314 QPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCNSLRA--LFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp HHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHHHHHH--HTTTCCTTTBCCCCSCCCT
T ss_pred ccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccchhHHH--HHHHHHhhcccccCceecc
Confidence 8999999999999999984 43 778899999999999998643322 2334444445555544443
No 265
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=5.1e-38 Score=342.52 Aligned_cols=262 Identities=23% Similarity=0.302 Sum_probs=193.2
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCC------eee
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPD------FKA 573 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~ 573 (791)
..+|+..+.||+|+||.||+|+...+..||+|++..... ...+|+++++.++||||+++++++.... ..+
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 357999999999999999999987777799998764422 2235899999999999999999984432 378
Q ss_pred EEEecCCCCCHHHHHh---hCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeC-CCCcEEEeeeccc
Q 003855 574 LVLEFMPNGSLEKWLY---SHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLD-ENMAAHVSDFGIS 649 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~-~~~~~kl~Dfgla 649 (791)
+||||++++ +.+.+. .....+++..+..++.||++||+||| +.+|+||||||+||+++ .++.+||+|||+|
T Consensus 115 lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH----~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a 189 (394)
T 4e7w_A 115 LVLEYVPET-VYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH----SIGICHRDIKPQNLLLDPPSGVLKLIDFGSA 189 (394)
T ss_dssp EEEECCSEE-HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred EEeeccCcc-HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH----HCCccCCCCCHHHEEEcCCCCcEEEeeCCCc
Confidence 999999764 444333 23456899999999999999999999 67899999999999999 7999999999999
Q ss_pred cccCCCCCcceeecccccccccCCCccCCC-CCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhh
Q 003855 650 KLLGEGEDSVTQTMTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTE 728 (791)
Q Consensus 650 ~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (791)
+.+..... .....||+.|+|||++.+. .++.++||||+||++|||++|+.||.+... ...+...++.........
T Consensus 190 ~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~-~~~l~~i~~~~g~p~~~~ 265 (394)
T 4e7w_A 190 KILIAGEP---NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESG-IDQLVEIIKVLGTPSREQ 265 (394)
T ss_dssp EECCTTCC---CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHH
T ss_pred ccccCCCC---CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHH
Confidence 87654332 2234689999999987654 599999999999999999999999976322 112222222111110000
Q ss_pred --hcchhh--------hhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 729 --VVDANL--------VREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 729 --~~d~~~--------~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..++.. ............++.++.+++.+||+.||++|||+.|+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 266 IKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC 321 (394)
T ss_dssp HHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence 000000 0000000011124567899999999999999999999986
No 266
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=9.3e-38 Score=343.29 Aligned_cols=261 Identities=23% Similarity=0.272 Sum_probs=193.4
Q ss_pred hccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeecc------CCeee
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSN------PDFKA 573 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------~~~~~ 573 (791)
.+|+..+.||+|+||.||+|+.. +|+.||||++..... ...+|++++++++||||+++++++.. ....+
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 46899999999999999999975 689999999865422 23469999999999999999998843 22356
Q ss_pred EEEecCCCCCHHHHHh---hCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCC-CcEEEeeeccc
Q 003855 574 LVLEFMPNGSLEKWLY---SHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDEN-MAAHVSDFGIS 649 (791)
Q Consensus 574 lv~e~~~~g~L~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~-~~~kl~Dfgla 649 (791)
+||||+++ ++.+.+. .....+++..+..++.||++||+||| +.+|+||||||+|||++.+ +.+||+|||+|
T Consensus 130 lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH----~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a 204 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH----SFGICHRDIKPQNLLLDPDTAVLKLCDFGSA 204 (420)
T ss_dssp EEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH----TTTEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred eehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH----HCCccccCCChhhEEEeCCCCeEEeccchhh
Confidence 89999975 7776665 34456899999999999999999999 7899999999999999965 67899999999
Q ss_pred cccCCCCCcceeecccccccccCCCccCCC-CCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhh
Q 003855 650 KLLGEGEDSVTQTMTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTE 728 (791)
Q Consensus 650 ~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (791)
+.+..... ....+||+.|+|||++.+. .++.++|||||||++|||++|+.||.+... ...+.+.+..........
T Consensus 205 ~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~-~~~l~~i~~~lg~p~~~~ 280 (420)
T 1j1b_A 205 KQLVRGEP---NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSG-VDQLVEIIKVLGTPTREQ 280 (420)
T ss_dssp EECCTTCC---CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCSCCHHH
T ss_pred hhcccCCC---ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHH
Confidence 87654332 2234689999999988664 799999999999999999999999976322 122222222111110000
Q ss_pred ----------hcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 729 ----------VVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 729 ----------~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
...+.+....-.......++.++.+++.+||+.||++||++.|+++
T Consensus 281 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 281 IREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp HHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 0000000000000001134567889999999999999999999985
No 267
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=6.2e-37 Score=333.22 Aligned_cols=202 Identities=27% Similarity=0.319 Sum_probs=172.5
Q ss_pred HHHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhcc-CC-----ccceeeeeeccC
Q 003855 497 QRATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVR-HR-----NLIKILSSCSNP 569 (791)
Q Consensus 497 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~-----niv~l~~~~~~~ 569 (791)
....++|++.+.||+|+||.||+|+.. +++.||||++.... .....+..|+.+++.++ |+ +|+++++++...
T Consensus 50 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~ 128 (382)
T 2vx3_A 50 EKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFR 128 (382)
T ss_dssp CEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEET
T ss_pred CEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccC
Confidence 344679999999999999999999875 78899999987542 33466778888888884 54 499999999999
Q ss_pred CeeeEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeC--CCCcEEEeee
Q 003855 570 DFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLD--ENMAAHVSDF 646 (791)
Q Consensus 570 ~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~--~~~~~kl~Df 646 (791)
+..++||||++ |+|.+++.... ..+++..+..++.|++.||.|||.. ..+|+||||||+|||++ .++.+||+||
T Consensus 129 ~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~--~~~ivHrDlkp~NIll~~~~~~~~kL~DF 205 (382)
T 2vx3_A 129 NHLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP--ELSIIHCDLKPENILLCNPKRSAIKIVDF 205 (382)
T ss_dssp TEEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST--TTCEECCCCSGGGEEESSTTSCCEEECCC
T ss_pred CceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC--CCCEEcCCCCcccEEEecCCCCcEEEEec
Confidence 99999999995 59999998654 4589999999999999999999931 35899999999999995 5788999999
Q ss_pred ccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCcc
Q 003855 647 GISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 707 (791)
Q Consensus 647 gla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~ 707 (791)
|+|+..... .....||+.|+|||++.+..++.++|||||||++|||+||+.||.+.
T Consensus 206 G~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~ 261 (382)
T 2vx3_A 206 GSSCQLGQR-----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA 261 (382)
T ss_dssp TTCEETTCC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cCceecccc-----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 999876432 22356899999999999999999999999999999999999999763
No 268
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=1.4e-37 Score=331.15 Aligned_cols=267 Identities=24% Similarity=0.319 Sum_probs=200.3
Q ss_pred HhhccccccccCCCcceEEEEEEe--cCCcEEEEEEeehhhh--HHHHHHHHHHHHHHhc---cCCccceeeeeec----
Q 003855 499 ATDEFNECNLLGTGSFGSVYKGTI--SDGTDVAIKIFNLQLE--RAFRSFDSECEVLRNV---RHRNLIKILSSCS---- 567 (791)
Q Consensus 499 ~~~~~~~~~~ig~G~~g~Vy~~~~--~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l---~h~niv~l~~~~~---- 567 (791)
..++|++.+.||+|+||.||+|+. .+++.||||++..... .....+.+|+.+++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 457899999999999999999997 4688999999864431 1123455677777666 8999999999986
Q ss_pred -cCCeeeEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEee
Q 003855 568 -NPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSD 645 (791)
Q Consensus 568 -~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~D 645 (791)
.....++||||++ |+|.+++.... ..+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~gi~H~dlkp~Nili~~~~~~kl~D 163 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH----SHRVVHRDLKPQNILVTSSGQIKLAD 163 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTCCEEECS
T ss_pred CCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH----HCCceeccCCHHHeEEcCCCCEEEec
Confidence 5667899999997 69999998653 34899999999999999999999 67899999999999999999999999
Q ss_pred eccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC
Q 003855 646 FGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG 725 (791)
Q Consensus 646 fgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 725 (791)
||+++..... .......|+..|+|||++.+..++.++|||||||++|||++|+.||...... ..+...+.......
T Consensus 164 fg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~i~~~~~~~~ 239 (326)
T 1blx_A 164 FGLARIYSFQ---MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV-DQLGKILDVIGLPG 239 (326)
T ss_dssp CCSCCCCCGG---GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCC
T ss_pred CcccccccCC---CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHH-HHHHHHHHHcCCCC
Confidence 9999865432 1223456899999999999889999999999999999999999999763221 11222221111000
Q ss_pred hhhh---cc-h--hhhhh--HHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 726 LTEV---VD-A--NLVRE--EQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 726 ~~~~---~d-~--~~~~~--~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.... .. + .+... .........++..+.+++.+||+.||++||++.|+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 240 EEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp GGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 0000 00 0 00000 0000011235567889999999999999999999985
No 269
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=7.4e-38 Score=333.37 Aligned_cols=253 Identities=23% Similarity=0.280 Sum_probs=177.7
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh-hHHHHHHHHHHH-HHHhccCCccceeeeeeccCCeeeEEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL-ERAFRSFDSECE-VLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~-~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
.++|+..+.||+|+||.||+|... +|+.||||++.... ......+..|+. +++.++||||+++++++.+.+..++||
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~ 100 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM 100 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence 368899999999999999999975 78999999987543 233344555555 677789999999999999999999999
Q ss_pred ecCCCCCHHHHHhh----CCCCCCHHHHHHHHHHHHHHHHHHHccCCCC-CeEecCCCCCCeEeCCCCcEEEeeeccccc
Q 003855 577 EFMPNGSLEKWLYS----HNYFLDILERLNIMIDVGSALEYLHHGHSSA-PIIHCDLKPTNILLDENMAAHVSDFGISKL 651 (791)
Q Consensus 577 e~~~~g~L~~~l~~----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-~i~H~dlk~~Nill~~~~~~kl~Dfgla~~ 651 (791)
||+++ +|.+++.. ....+++..+..++.|++.||.||| +. +|+||||||+||+++.++.+||+|||+++.
T Consensus 101 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH----~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 175 (327)
T 3aln_A 101 ELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK----ENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQ 175 (327)
T ss_dssp CCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH----HHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC
T ss_pred eecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHh----ccCCEeECCCCHHHEEEcCCCCEEEccCCCcee
Confidence 99975 88888763 2455899999999999999999999 55 899999999999999999999999999987
Q ss_pred cCCCCCcceeecccccccccCCCcc----CCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChh
Q 003855 652 LGEGEDSVTQTMTMATIGYMAPEYG----SEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLT 727 (791)
Q Consensus 652 ~~~~~~~~~~~~~~g~~~y~aPE~~----~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 727 (791)
..... ......||+.|+|||++ .+..++.++||||||+++|||++|+.||........ .+.........
T Consensus 176 ~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~----~~~~~~~~~~~ 248 (327)
T 3aln_A 176 LVDSI---AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFD----QLTQVVKGDPP 248 (327)
T ss_dssp ---------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-----------CCCCCSCCC
T ss_pred ccccc---ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHH----HHHHHhcCCCC
Confidence 64332 22234689999999998 466789999999999999999999999975321110 01000000000
Q ss_pred hhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 728 EVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 728 ~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
. +.. .....++..+.+++.+||+.||++||++.|+++
T Consensus 249 ~-----~~~-----~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 249 Q-----LSN-----SEEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp C-----CCC-----CSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred C-----CCC-----cccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 0 000 001124567889999999999999999999976
No 270
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=328.01 Aligned_cols=251 Identities=23% Similarity=0.279 Sum_probs=182.8
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
.++|+..+.||+|+||.||+|+.. +|+.||||++.... ....+.+.++..+++.++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 468999999999999999999975 78999999987543 223344555566788889999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCC-CeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSA-PIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
||+ ++.+..+.......+++..+..++.|++.||.||| +. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 104 e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH----~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~ 178 (318)
T 2dyl_A 104 ELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLK----EKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDD 178 (318)
T ss_dssp CCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred ecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH----hhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCC
Confidence 999 56676666554556899999999999999999999 43 8999999999999999999999999999766432
Q ss_pred CCcceeecccccccccCCCccC-----CCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhc
Q 003855 656 EDSVTQTMTMATIGYMAPEYGS-----EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVV 730 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~-----~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (791)
. ......|++.|+|||.+. ...++.++|||||||++|||++|+.||..................+ .
T Consensus 179 ~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~-~----- 249 (318)
T 2dyl_A 179 K---AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPP-L----- 249 (318)
T ss_dssp -----------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCC-C-----
T ss_pred c---cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCC-C-----
Confidence 2 122346899999999884 5678899999999999999999999997532221111111111100 0
Q ss_pred chhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 731 DANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 731 d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.+....++..+.+++.+||+.||++||++.|+++
T Consensus 250 ----------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 250 ----------LPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp ----------CCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ----------CCccCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 0011124566889999999999999999999986
No 271
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=4.5e-37 Score=330.83 Aligned_cols=261 Identities=22% Similarity=0.247 Sum_probs=195.9
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeeeccCCe-----
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDF----- 571 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~----- 571 (791)
.++|...+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.++++++||||+++++++.....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 367999999999999999999975 78999999986542 3345678899999999999999999999977654
Q ss_pred -eeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 572 -KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 572 -~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
.++||||++ |+|.+++.. .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~LH----~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~ 174 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL---KFSEEKIQYLVYQMLKGLKYIH----SAGVVHRDLKPGNLAVNEDCELKILDFGLAR 174 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS---CCCHHHHHHHHHHHHHHHHHHH----HTTCCCSSCCGGGEEECTTCCEEECSTTCTT
T ss_pred eEEEEecccc-CCHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCCHHHEeECCCCcEEEeeccccc
Confidence 499999997 688887643 3899999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCcceeecccccccccCCCccCC-CCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCC--Chh
Q 003855 651 LLGEGEDSVTQTMTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPH--GLT 727 (791)
Q Consensus 651 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~--~~~ 727 (791)
..... .....||+.|+|||.+.+ ..++.++|||||||++|||++|+.||.+.... ..+.......... ...
T Consensus 175 ~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~ 248 (353)
T 3coi_A 175 HADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYL-DQLTQILKVTGVPGTEFV 248 (353)
T ss_dssp C-------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHH-HHHHHHHHHHCBCCHHHH
T ss_pred CCCCC-----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCCHHHH
Confidence 65322 223468999999998776 67899999999999999999999999763221 1111111111000 000
Q ss_pred hhcchhhhhhH-H---------hhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 728 EVVDANLVREE-Q---------AFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 728 ~~~d~~~~~~~-~---------~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..+........ . .......++..+.+++.+|++.||++|||+.|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 249 QKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp TTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 00000000000 0 00011234677899999999999999999999985
No 272
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=9.2e-37 Score=329.00 Aligned_cols=262 Identities=23% Similarity=0.287 Sum_probs=200.2
Q ss_pred hhccccccccCCCcceEEEEEEec-CC-cEEEEEEeehhhhHHHHHHHHHHHHHHhccCCc------cceeeeeeccCCe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DG-TDVAIKIFNLQLERAFRSFDSECEVLRNVRHRN------LIKILSSCSNPDF 571 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~-~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~l~~~~~~~~~ 571 (791)
.++|++.+.||+|+||.||+|... ++ +.||||++.... ...+.+..|+.++++++|++ ++.+.+++.....
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc-cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 478999999999999999999974 44 789999987542 34567788999999998766 8999999999999
Q ss_pred eeEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEe---------------
Q 003855 572 KALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILL--------------- 635 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill--------------- 635 (791)
.++||||+ ++++.+++.... ..+++..+..++.||+.||+||| +.+|+||||||+||++
T Consensus 97 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH----~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~ 171 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH----ENQLTHTDLKPENILFVNSEFETLYNEHKSC 171 (355)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH----TTTEECCCCCGGGEEESCCCEEEEECCC-CC
T ss_pred EEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCCHHHEEEecccccccccccccc
Confidence 99999999 667888777553 45899999999999999999999 7799999999999999
Q ss_pred ----CCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCc
Q 003855 636 ----DENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE 711 (791)
Q Consensus 636 ----~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~ 711 (791)
+.++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||......+
T Consensus 172 ~~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~ 246 (355)
T 2eu9_A 172 EEKSVKNTSIRVADFGSATFDHEH-----HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENRE 246 (355)
T ss_dssp CEEEESCCCEEECCCTTCEETTSC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred cccccCCCcEEEeecCcccccccc-----ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 56789999999999875432 223468999999999999999999999999999999999999997632211
Q ss_pred chHHHHHHHhcCCChhhhc----------------chh-----hhh-----hHHhhHHHHHHHHHHHHHHhhccccCCCC
Q 003855 712 MSLRRWVKESLPHGLTEVV----------------DAN-----LVR-----EEQAFSAKMDCILSIMDLALDCCIESPDM 765 (791)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~----------------d~~-----~~~-----~~~~~~~~~~~~~~l~~li~~cl~~~P~~ 765 (791)
....+............ +.. ... ..........++..+.+++.+||+.||++
T Consensus 247 --~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~ 324 (355)
T 2eu9_A 247 --HLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQ 324 (355)
T ss_dssp --HHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTT
T ss_pred --HHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhh
Confidence 11111111110000000 000 000 00000111234567899999999999999
Q ss_pred CCCHHHHHH
Q 003855 766 RINVTDAAA 774 (791)
Q Consensus 766 RPt~~ev~~ 774 (791)
|||+.|+++
T Consensus 325 Rpt~~e~l~ 333 (355)
T 2eu9_A 325 RITLAEALL 333 (355)
T ss_dssp SCCHHHHTT
T ss_pred CcCHHHHhc
Confidence 999999984
No 273
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=5.8e-38 Score=332.74 Aligned_cols=243 Identities=23% Similarity=0.270 Sum_probs=198.7
Q ss_pred HHHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhH------HHHHHHHHHHHHHhcc--CCccceeeeeec
Q 003855 497 QRATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLER------AFRSFDSECEVLRNVR--HRNLIKILSSCS 567 (791)
Q Consensus 497 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~--h~niv~l~~~~~ 567 (791)
....++|++.+.||+|+||.||+|+.. +++.||||++...... ..+.+..|+.++++++ ||||+++++++.
T Consensus 39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~ 118 (320)
T 3a99_A 39 EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFE 118 (320)
T ss_dssp -CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEE
T ss_pred CCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEe
Confidence 344578999999999999999999864 7899999998765321 2245667999999996 599999999999
Q ss_pred cCCeeeEEEecCCC-CCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeC-CCCcEEEee
Q 003855 568 NPDFKALVLEFMPN-GSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLD-ENMAAHVSD 645 (791)
Q Consensus 568 ~~~~~~lv~e~~~~-g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~-~~~~~kl~D 645 (791)
+++..++||||+.+ ++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++ +++.+||+|
T Consensus 119 ~~~~~~lv~e~~~~~~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dlkp~NIll~~~~~~~kL~D 193 (320)
T 3a99_A 119 RPDSFVLILERPEPVQDLFDFITERG-ALQEELARSFFWQVLEAVRHCH----NCGVLHRDIKDENILIDLNRGELKLID 193 (320)
T ss_dssp CSSEEEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEEETTTTEEEECC
T ss_pred cCCcEEEEEEcCCCCccHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH----HCCcEeCCCCHHHEEEeCCCCCEEEee
Confidence 99999999999976 89999998654 4899999999999999999999 67899999999999999 789999999
Q ss_pred eccccccCCCCCcceeecccccccccCCCccCCCCC-CccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCC
Q 003855 646 FGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPH 724 (791)
Q Consensus 646 fgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 724 (791)
||+++...... .....||+.|+|||++.+..+ +.++||||||+++|||++|+.||.... ........
T Consensus 194 fg~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~-------~~~~~~~~- 261 (320)
T 3a99_A 194 FGSGALLKDTV----YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-------EIIRGQVF- 261 (320)
T ss_dssp CTTCEECCSSC----BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------HHHHCCCC-
T ss_pred Ccccccccccc----ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh-------hhhccccc-
Confidence 99998765432 223468999999998876655 788999999999999999999996521 11110000
Q ss_pred ChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 725 GLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 725 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
....++.++.+++.+||+.||++|||+.|+++
T Consensus 262 ------------------~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 262 ------------------FRQRVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp ------------------CSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ------------------ccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 01123466789999999999999999999986
No 274
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=3.3e-37 Score=328.99 Aligned_cols=252 Identities=22% Similarity=0.278 Sum_probs=173.8
Q ss_pred Hhhcccccc-ccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeecc----CCee
Q 003855 499 ATDEFNECN-LLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSN----PDFK 572 (791)
Q Consensus 499 ~~~~~~~~~-~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~ 572 (791)
..++|++.+ .||+|+||.||+|+.. +++.||||++..... ...+....++.+.||||+++++++.. ....
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 101 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPK----ARQEVDHHWQASGGPHIVCILDVYENMHHGKRCL 101 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHH----HHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHH----HHHHHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence 357888855 6999999999999976 799999999865422 11222334566799999999999865 4558
Q ss_pred eEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCC---CCcEEEeeecc
Q 003855 573 ALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDE---NMAAHVSDFGI 648 (791)
Q Consensus 573 ~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~---~~~~kl~Dfgl 648 (791)
++||||+++|+|.+++.... ..+++..+..++.|++.||.||| +.+|+||||||+||+++. ++.+||+|||+
T Consensus 102 ~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH----~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~ 177 (336)
T 3fhr_A 102 LIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLH----SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGF 177 (336)
T ss_dssp EEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred EEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH----hCCeecCCCCHHHEEEEecCCCceEEEecccc
Confidence 99999999999999998654 35899999999999999999999 678999999999999986 45699999999
Q ss_pred ccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhh
Q 003855 649 SKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTE 728 (791)
Q Consensus 649 a~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (791)
++...... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.......... . ...........
T Consensus 178 ~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~-~-~~~~~~~~~~~ 251 (336)
T 3fhr_A 178 AKETTQNA----LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISP-G-MKRRIRLGQYG 251 (336)
T ss_dssp CEEC--------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-----------------------C
T ss_pred ceeccccc----cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhh-h-HHHhhhccccc
Confidence 98754322 223468999999999988899999999999999999999999997533221100 0 00000000000
Q ss_pred hcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 729 VVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 729 ~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
. ..+....++..+.+++.+||+.||++|||+.|+++
T Consensus 252 ~----------~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 252 F----------PNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp C----------CTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred c----------CchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0 00111235567889999999999999999999987
No 275
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3e-36 Score=334.06 Aligned_cols=346 Identities=20% Similarity=0.207 Sum_probs=252.8
Q ss_pred cCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCcccc
Q 003855 20 FAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFA 99 (791)
Q Consensus 20 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 99 (791)
...+......+..+.++++|++|+|++|.++ .+| .+.. +++|++|+|++|+|+++ | ++.+++|++|+|++|+++
T Consensus 25 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-~l~~-l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~ 98 (457)
T 3bz5_A 25 AAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEK-LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT 98 (457)
T ss_dssp HHHTTCCTTSEEEHHHHTTCCEEECCSSCCC-CCT-TGGG-CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS
T ss_pred HHhcCcCcccccChhHcCCCCEEEccCCCcc-cCh-hhcc-cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc
Confidence 3344555566778899999999999999998 677 4554 89999999999999975 4 899999999999999999
Q ss_pred ccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccc
Q 003855 100 GHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKL 179 (791)
Q Consensus 100 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l 179 (791)
++. |+++++|+.|++++|+++.++ +..+++|++|++++|++++. + +..+ ++|++|++++|..
T Consensus 99 ~~~---~~~l~~L~~L~L~~N~l~~l~-----------~~~l~~L~~L~l~~N~l~~l-~--l~~l-~~L~~L~l~~n~~ 160 (457)
T 3bz5_A 99 NLD---VTPLTKLTYLNCDTNKLTKLD-----------VSQNPLLTYLNCARNTLTEI-D--VSHN-TQLTELDCHLNKK 160 (457)
T ss_dssp CCC---CTTCTTCCEEECCSSCCSCCC-----------CTTCTTCCEEECTTSCCSCC-C--CTTC-TTCCEEECTTCSC
T ss_pred eee---cCCCCcCCEEECCCCcCCeec-----------CCCCCcCCEEECCCCcccee-c--cccC-CcCCEEECCCCCc
Confidence 863 899999999999999998753 78899999999999999975 2 3333 5689999999965
Q ss_pred cccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccc
Q 003855 180 KGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCL 259 (791)
Q Consensus 180 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~ 259 (791)
.+.+ .+..+++|+.|++++|+++++ | +..+++|++|++++|++++. .+..+++|+.|++++|++++ +| +
T Consensus 161 ~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~ 229 (457)
T 3bz5_A 161 ITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--V 229 (457)
T ss_dssp CCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--C
T ss_pred cccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--c
Confidence 5555 478889999999999999864 3 78889999999999999864 38888999999999999986 45 7
Q ss_pred cCCCCCcEEEcCCCcCCCCCCccccCCC-------CCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCc---
Q 003855 260 VSLTSLRELHLGSNKLTSSIPSSLWSLE-------YILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPS--- 329 (791)
Q Consensus 260 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--- 329 (791)
+.+++|+.|++++|++++..+..+..+. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|.
T Consensus 230 ~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~ 307 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAA 307 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTC
T ss_pred cccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCC
Confidence 8889999999999999876554444443 44555555555544444 45667777777777765544432
Q ss_pred -----chhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCCCCC
Q 003855 330 -----TIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVKGS 404 (791)
Q Consensus 330 -----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~ 404 (791)
.+..+++|+.|++++|++++. + ++.+++|+.|++++|++++ ++.|..|++++|.++|.. .
T Consensus 308 ~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~~----~ 372 (457)
T 3bz5_A 308 GITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAEG----Q 372 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEEE----E
T ss_pred cceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEecc----e
Confidence 134445556666666666542 2 5555666666666666653 134444555666665541 2
Q ss_pred CcCCccccccCCc
Q 003855 405 FKNFSVESFFGNY 417 (791)
Q Consensus 405 ~~~l~~~~~~~n~ 417 (791)
+..++.+.+..|.
T Consensus 373 ~~~l~~l~l~~N~ 385 (457)
T 3bz5_A 373 TITMPKETLTNNS 385 (457)
T ss_dssp EEECCCBCCBTTB
T ss_pred eeecCccccccCc
Confidence 3334444444444
No 276
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=1.1e-36 Score=329.06 Aligned_cols=273 Identities=19% Similarity=0.209 Sum_probs=190.4
Q ss_pred hHHHHHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeeeeccCCe-
Q 003855 494 LDIQRATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDF- 571 (791)
Q Consensus 494 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~- 571 (791)
.......++|++.+.||+|+||.||+|+.. +|+.||||++..... ....+.+++..++.++||||+++++++.....
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR-FRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT-CCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc-ccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 455677889999999999999999999975 789999998865432 22345667888889999999999999854332
Q ss_pred ------eeEEEecCCCCCHHHHHh---hCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCC-CCcE
Q 003855 572 ------KALVLEFMPNGSLEKWLY---SHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDE-NMAA 641 (791)
Q Consensus 572 ------~~lv~e~~~~g~L~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~-~~~~ 641 (791)
.++||||+++ ++.+.+. .....+++..+..++.|++.||.|||.. +.+|+||||||+||+++. ++.+
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~--~~~ivH~Dlkp~NIll~~~~~~~ 171 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLP--SVNVCHRDIKPHNVLVNEADGTL 171 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTST--TTCCBCSCCCGGGEEEETTTTEE
T ss_pred cccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCC--CCCeecCcCCHHHEEEeCCCCcE
Confidence 7899999976 6655544 2445589999999999999999999931 468999999999999996 8999
Q ss_pred EEeeeccccccCCCCCcceeecccccccccCCCccCCC-CCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHH
Q 003855 642 HVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKE 720 (791)
Q Consensus 642 kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~ 720 (791)
||+|||+++....... .....||+.|+|||++.+. .++.++|||||||++|||++|+.||..... ...+...+..
T Consensus 172 kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~-~~~~~~~~~~ 247 (360)
T 3e3p_A 172 KLCDFGSAKKLSPSEP---NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNS-AGQLHEIVRV 247 (360)
T ss_dssp EECCCTTCBCCCTTSC---CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHH
T ss_pred EEeeCCCceecCCCCC---cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCCh-HHHHHHHHHH
Confidence 9999999987654332 2334689999999987654 489999999999999999999999976322 1222222221
Q ss_pred hcCCC--hhhhcchh-----------hhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 721 SLPHG--LTEVVDAN-----------LVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 721 ~~~~~--~~~~~d~~-----------~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..... ....+++. .............++.++.+++.+||+.||++|||+.|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 248 LGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp HCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred cCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence 11110 00000000 00000000011124677899999999999999999999986
No 277
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=3e-37 Score=340.78 Aligned_cols=251 Identities=24% Similarity=0.317 Sum_probs=187.2
Q ss_pred hccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCeeeEEEecC
Q 003855 501 DEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDFKALVLEFM 579 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~ 579 (791)
+.|...+.||+|+||+||.+...+|+.||||++.... .+.+.+|+.+++++ +||||+++++++.+....++||||+
T Consensus 15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~ 91 (434)
T 2rio_A 15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF---CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELC 91 (434)
T ss_dssp SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG---HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCC
T ss_pred heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecC
Confidence 3455678899999999987666689999999987543 34567899999887 8999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCC------CCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCC-------------Cc
Q 003855 580 PNGSLEKWLYSHNYF------LDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDEN-------------MA 640 (791)
Q Consensus 580 ~~g~L~~~l~~~~~~------~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~-------------~~ 640 (791)
. |+|.+++...... .++..+..++.||+.||+||| +.+|+||||||+||+++.+ +.
T Consensus 92 ~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~ 166 (434)
T 2rio_A 92 N-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH----SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLR 166 (434)
T ss_dssp S-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCE
T ss_pred C-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH----HCCccccCCChHhEEEecCcccccccccCCCceE
Confidence 5 6999999865321 123345789999999999999 6789999999999999754 48
Q ss_pred EEEeeeccccccCCCCCcc--eeecccccccccCCCccCC-------CCCCccccHHhHHHHHHHHHh-CCCCCCccccC
Q 003855 641 AHVSDFGISKLLGEGEDSV--TQTMTMATIGYMAPEYGSE-------GIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTG 710 (791)
Q Consensus 641 ~kl~Dfgla~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~-------~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~ 710 (791)
+||+|||+|+.+....... ......||++|+|||++.+ ..++.++|||||||++|||+| |+.||......
T Consensus 167 ~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~ 246 (434)
T 2rio_A 167 ILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSR 246 (434)
T ss_dssp EEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTH
T ss_pred EEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhh
Confidence 9999999999876543221 1234579999999998865 678999999999999999999 99999753322
Q ss_pred cchHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 711 EMSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
+ .............. ......++.++.+++.+||+.||++|||+.|+++
T Consensus 247 ~---~~i~~~~~~~~~~~------------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 247 E---SNIIRGIFSLDEMK------------CLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp H---HHHHHTCCCCCCCT------------TCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred H---HHHhcCCCCccccc------------ccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 1 12222111110000 0011245677889999999999999999999985
No 278
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=8e-37 Score=331.85 Aligned_cols=264 Identities=19% Similarity=0.217 Sum_probs=198.3
Q ss_pred hhccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhhhHHHHHHHHHHHHHHhcc-----------CCccceeeeeec
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQLERAFRSFDSECEVLRNVR-----------HRNLIKILSSCS 567 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----------h~niv~l~~~~~ 567 (791)
.++|++.+.||+|+||.||+|+. .+++.||||++.... ...+.+.+|+.++++++ ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 36899999999999999999996 478999999987543 33466788999999886 899999999987
Q ss_pred cCC----eeeEEEecCCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccCCCC-CeEecCCCCCCeEeC-----
Q 003855 568 NPD----FKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLHHGHSSA-PIIHCDLKPTNILLD----- 636 (791)
Q Consensus 568 ~~~----~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-~i~H~dlk~~Nill~----- 636 (791)
..+ ..++||||+ +++|.+++... ...+++..+..++.||+.||+||| +. +|+||||||+||+++
T Consensus 97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH----~~~~ivH~Dikp~NIll~~~~~~ 171 (373)
T 1q8y_A 97 HKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMH----RRCGIIHTDIKPENVLMEIVDSP 171 (373)
T ss_dssp EEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH----HTTCEECSCCSGGGEEEEEEETT
T ss_pred ccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH----hcCCEEecCCChHHeEEeccCCC
Confidence 543 789999999 89999999864 345899999999999999999999 55 899999999999994
Q ss_pred -CCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCc----
Q 003855 637 -ENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE---- 711 (791)
Q Consensus 637 -~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~---- 711 (791)
..+.+||+|||+|+..... .....||+.|+|||++.+..++.++|||||||++|||+||+.||.......
T Consensus 172 ~~~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~ 246 (373)
T 1q8y_A 172 ENLIQIKIADLGNACWYDEH-----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKD 246 (373)
T ss_dssp TTEEEEEECCCTTCEETTBC-----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CH
T ss_pred cCcceEEEcccccccccCCC-----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCCh
Confidence 4458999999999876432 223468999999999998899999999999999999999999997533211
Q ss_pred -chHHHHHHHhcCCCh---------hhhcch-------------hhh-hhHHhhHHHHHHHHHHHHHHhhccccCCCCCC
Q 003855 712 -MSLRRWVKESLPHGL---------TEVVDA-------------NLV-REEQAFSAKMDCILSIMDLALDCCIESPDMRI 767 (791)
Q Consensus 712 -~~~~~~~~~~~~~~~---------~~~~d~-------------~~~-~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RP 767 (791)
..+...+........ ...+.. .+. ........+..++.++.+++.+||+.||++||
T Consensus 247 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp 326 (373)
T 1q8y_A 247 DDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA 326 (373)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCB
T ss_pred HHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccC
Confidence 111111111000000 000000 000 00001112245678899999999999999999
Q ss_pred CHHHHHH
Q 003855 768 NVTDAAA 774 (791)
Q Consensus 768 t~~ev~~ 774 (791)
|+.|+++
T Consensus 327 t~~ell~ 333 (373)
T 1q8y_A 327 DAGGLVN 333 (373)
T ss_dssp CHHHHHT
T ss_pred CHHHHhh
Confidence 9999986
No 279
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1e-35 Score=319.74 Aligned_cols=307 Identities=27% Similarity=0.404 Sum_probs=212.7
Q ss_pred ccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCccccccccccccccccc
Q 003855 33 IFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHL 112 (791)
Q Consensus 33 ~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 112 (791)
+..+++|++|++++|.+. .+|. +.. +++|++|+|++|.++++.+ |..+++|++|+|++|.++.+ ..|.++++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~-~~~-~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG-IEY-LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT-GGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred chhcccccEEEEeCCccc-cchh-hhh-cCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 445666777777777665 5553 333 6667777777776664433 66667777777777766643 246666666
Q ss_pred cccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCC
Q 003855 113 SLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSG 192 (791)
Q Consensus 113 ~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 192 (791)
++|++++|+++.++ .+..+++|+.|++++|..... +..+..+++
T Consensus 113 ~~L~l~~n~i~~~~----------~~~~l~~L~~L~l~~n~~~~~--------------------------~~~~~~l~~ 156 (347)
T 4fmz_A 113 RELYLNEDNISDIS----------PLANLTKMYSLNLGANHNLSD--------------------------LSPLSNMTG 156 (347)
T ss_dssp SEEECTTSCCCCCG----------GGTTCTTCCEEECTTCTTCCC--------------------------CGGGTTCTT
T ss_pred CEEECcCCcccCch----------hhccCCceeEEECCCCCCccc--------------------------ccchhhCCC
Confidence 66666666666543 156677777777777754322 122566777
Q ss_pred CCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCC
Q 003855 193 LTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGS 272 (791)
Q Consensus 193 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 272 (791)
|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++
T Consensus 157 L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN 230 (347)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred CcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccC
Confidence 7777887777774433 6777778888888887774333 7777778888888887775433 77777888888888
Q ss_pred CcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCC
Q 003855 273 NKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIP 352 (791)
Q Consensus 273 N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 352 (791)
|++++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..+
T Consensus 231 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 231 NKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH
T ss_pred CccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh
Confidence 88875443 77778888888888887653 4577788888888888888743 457778888888888888887777
Q ss_pred cccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCc
Q 003855 353 ESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLE 396 (791)
Q Consensus 353 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~ 396 (791)
..++.+++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 778888888888888888886655 777888888888888775
No 280
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.1e-36 Score=335.02 Aligned_cols=352 Identities=24% Similarity=0.237 Sum_probs=267.0
Q ss_pred cccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCC-------------ccEEEccCCcc
Q 003855 8 EIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPN-------------IESLLLAANNL 74 (791)
Q Consensus 8 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~-------------L~~L~L~~N~l 74 (791)
.--..+.|++|++++|++ +.+|.+|+++++|++|++++|++.|.+|..++. +++ +++|++++|.+
T Consensus 6 ~~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~-l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 6 RNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGE-QREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCC-CHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred cccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccccc-chhcchhhhhhhhccCCCEEEecCCcc
Confidence 334568999999999999 688999999999999999999999999998876 454 59999999999
Q ss_pred eecCCccCcCCCCCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCC
Q 003855 75 TGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPL 154 (791)
Q Consensus 75 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l 154 (791)
++ +|.. .++|++|++++|.++++. . .+++|+.|++++|+++.++. + .++|++|++++|++
T Consensus 84 ~~-lp~~---~~~L~~L~l~~n~l~~lp-~---~~~~L~~L~l~~n~l~~l~~----------~--~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 84 SS-LPEL---PPHLESLVASCNSLTELP-E---LPQSLKSLLVDNNNLKALSD----------L--PPLLEYLGVSNNQL 143 (454)
T ss_dssp SC-CCSC---CTTCSEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSCCCS----------C--CTTCCEEECCSSCC
T ss_pred cc-CCCC---cCCCCEEEccCCcCCccc-c---ccCCCcEEECCCCccCcccC----------C--CCCCCEEECcCCCC
Confidence 96 4442 378999999999999743 3 24889999999999987542 1 16999999999999
Q ss_pred cccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCcc
Q 003855 155 GGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYD 234 (791)
Q Consensus 155 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 234 (791)
++ +| .+..+ .+|++|++++|++++ +|..+ .+|++|++++|++++ +| .|+.+++|++|++++|++++ +|..
T Consensus 144 ~~-lp-~~~~l-~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~ 213 (454)
T 1jl5_A 144 EK-LP-ELQNS-SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL 213 (454)
T ss_dssp SS-CC-CCTTC-TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC
T ss_pred CC-Cc-ccCCC-CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC
Confidence 97 56 45554 679999999999996 55543 589999999999996 45 69999999999999999995 4543
Q ss_pred ccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCC
Q 003855 235 LCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLT 314 (791)
Q Consensus 235 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~ 314 (791)
. ++|+.|++++|.++ .+|. ++.+++|++|++++|++++ +|.. +++|+.|++++|.+++ +|.. .++|+
T Consensus 214 ~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~ 280 (454)
T 1jl5_A 214 P---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLT 280 (454)
T ss_dssp C---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred c---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCC
Confidence 3 58999999999999 5664 9999999999999999985 4432 4899999999999986 4543 47899
Q ss_pred EEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCC-CCCcEEEccCCccCCCCchhhhhcccCceEEccCC
Q 003855 315 VLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSL-ISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHN 393 (791)
Q Consensus 315 ~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N 393 (791)
.|++++|++++ +|.. .++|+.|++++|++++ ++ .+ ++|+.|++++|++++ +|.. +++|+.|++++|
T Consensus 281 ~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N 347 (454)
T 1jl5_A 281 FLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFN 347 (454)
T ss_dssp EEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred EEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCC
Confidence 99999999985 2221 2689999999999985 33 23 589999999999996 5654 589999999999
Q ss_pred CCcccCCCCCCCcCCccccccCCcccc
Q 003855 394 RLEGEIPVKGSFKNFSVESFFGNYALC 420 (791)
Q Consensus 394 ~l~~~~~~~~~~~~l~~~~~~~n~~~c 420 (791)
++++. |. .+.+++.+.+.+|...+
T Consensus 348 ~l~~l-p~--~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 348 HLAEV-PE--LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCSCC-CC--CCTTCCEEECCSSCCSS
T ss_pred ccccc-cc--hhhhccEEECCCCCCCc
Confidence 99964 44 57889999999998765
No 281
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=328.76 Aligned_cols=245 Identities=25% Similarity=0.302 Sum_probs=190.4
Q ss_pred HHHHHhhccccccccCCCcceEEEEEEec-CCcEEEEEEeehhhh------HHHHHHHHHHHHHHhc----cCCccceee
Q 003855 495 DIQRATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLE------RAFRSFDSECEVLRNV----RHRNLIKIL 563 (791)
Q Consensus 495 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l----~h~niv~l~ 563 (791)
+.....++|++.+.||+|+||.||+|+.. +++.||||++..... .....+..|+.++.++ +||||++++
T Consensus 25 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~ 104 (312)
T 2iwi_A 25 DREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL 104 (312)
T ss_dssp --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred chhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence 34455678999999999999999999864 789999999865432 1223456789999998 899999999
Q ss_pred eeeccCCeeeEEEec-CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeC-CCCcE
Q 003855 564 SSCSNPDFKALVLEF-MPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLD-ENMAA 641 (791)
Q Consensus 564 ~~~~~~~~~~lv~e~-~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~-~~~~~ 641 (791)
+++.+.+..++|||| +.+++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++ .++.+
T Consensus 105 ~~~~~~~~~~~v~e~~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~~ 179 (312)
T 2iwi_A 105 DWFETQEGFMLVLERPLPAQDLFDYITEKG-PLGEGPSRCFFGQVVAAIQHCH----SRGVVHRDIKDENILIDLRRGCA 179 (312)
T ss_dssp EEC-----CEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH----HHTEECCCCSGGGEEEETTTTEE
T ss_pred EEEecCCeEEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeeecCCChhhEEEeCCCCeE
Confidence 999999999999999 78999999998654 3899999999999999999999 67899999999999999 89999
Q ss_pred EEeeeccccccCCCCCcceeecccccccccCCCccCCCCC-CccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHH
Q 003855 642 HVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKE 720 (791)
Q Consensus 642 kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~-~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~ 720 (791)
||+|||+++...... .....|+..|+|||++.+..+ +.++||||||+++|||++|+.||.... .....
T Consensus 180 kl~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-------~~~~~ 248 (312)
T 2iwi_A 180 KLIDFGSGALLHDEP----YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ-------EILEA 248 (312)
T ss_dssp EECCCSSCEECCSSC----BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------HHHHT
T ss_pred EEEEcchhhhcccCc----ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH-------HHhhh
Confidence 999999998765432 223468999999998876655 458999999999999999999996521 11110
Q ss_pred hcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 721 SLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 721 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
.. .....++..+.+++.+||+.||++||++.|+++
T Consensus 249 ~~-------------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 249 EL-------------------HFPAHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp CC-------------------CCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred cc-------------------CCcccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 00 001124456789999999999999999999987
No 282
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.7e-37 Score=336.75 Aligned_cols=250 Identities=24% Similarity=0.336 Sum_probs=187.4
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCeeeEEEec
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDFKALVLEF 578 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~ 578 (791)
..+|+..+.||+|+||+||.....+++.||||++...... .+.+|+.+++++ +||||+++++++.+....++||||
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~---~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~ 99 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFS---FADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIEL 99 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEE---ECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHH---HHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEEC
Confidence 3568889999999999866555558999999998654322 345799999999 799999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCC-----CCcEEEeeeccccccC
Q 003855 579 MPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDE-----NMAAHVSDFGISKLLG 653 (791)
Q Consensus 579 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~-----~~~~kl~Dfgla~~~~ 653 (791)
+. |+|.+++........+..+..++.||+.||+||| +.+|+||||||+||+++. ...+||+|||+|+...
T Consensus 100 ~~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~ 174 (432)
T 3p23_A 100 CA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLH----SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLA 174 (432)
T ss_dssp CS-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHH----HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC-
T ss_pred CC-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHH----HCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeecc
Confidence 96 6999999876655566667889999999999999 678999999999999953 3358899999998765
Q ss_pred CCCCc-ceeecccccccccCCCccC---CCCCCccccHHhHHHHHHHHHh-CCCCCCccccCcchHHHHHHHhcCCChhh
Q 003855 654 EGEDS-VTQTMTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHGLTE 728 (791)
Q Consensus 654 ~~~~~-~~~~~~~g~~~y~aPE~~~---~~~~~~~~Dv~s~G~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (791)
..... .......||++|+|||++. ...++.++|||||||++|||+| |..||....... ... ........
T Consensus 175 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~---~~~---~~~~~~~~ 248 (432)
T 3p23_A 175 VGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQ---ANI---LLGACSLD 248 (432)
T ss_dssp -----------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHH---HHH---HTTCCCCT
T ss_pred CCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHH---HHH---HhccCCcc
Confidence 43221 2234457999999999987 4667889999999999999999 899986422111 111 11110000
Q ss_pred hcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 729 VVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 729 ~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
... .....+..+.+++.+||+.||++|||+.||++
T Consensus 249 ~~~-----------~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 249 CLH-----------PEKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp TSC-----------TTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ccC-----------ccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 000 01123455779999999999999999999984
No 283
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.4e-35 Score=316.81 Aligned_cols=308 Identities=25% Similarity=0.384 Sum_probs=261.6
Q ss_pred cccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCC
Q 003855 8 EIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATK 87 (791)
Q Consensus 8 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 87 (791)
.+.++++|++|++++|++..+ | .+..+++|++|++++|+++ .+|. + ..+++|++|+|++|.++++ ..|.++++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~-~~~~-~-~~l~~L~~L~L~~n~i~~~--~~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQIT-DISP-L-SNLVKLTNLYIGTNKITDI--SALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred cchhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccc-cchh-h-hcCCcCCEEEccCCcccCc--hHHcCCCc
Confidence 345789999999999999854 4 4899999999999999998 7776 4 4489999999999999964 46999999
Q ss_pred CCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhh
Q 003855 88 LVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSA 167 (791)
Q Consensus 88 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 167 (791)
|++|+|++|.+....+ +.++++|+.|++++|..... ++.+..+++|++|++++|.+.+..
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~---------~~~~~~l~~L~~L~l~~~~~~~~~--------- 171 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD---------LSPLSNMTGLNYLTVTESKVKDVT--------- 171 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC---------CGGGTTCTTCCEEECCSSCCCCCG---------
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCCCccc---------ccchhhCCCCcEEEecCCCcCCch---------
Confidence 9999999999987655 99999999999999964432 234889999999999999987431
Q ss_pred hhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEec
Q 003855 168 SLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLT 247 (791)
Q Consensus 168 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 247 (791)
.+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|+++
T Consensus 172 ------------------~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~ 229 (347)
T 4fmz_A 172 ------------------PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIG 229 (347)
T ss_dssp ------------------GGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred ------------------hhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEcc
Confidence 15678889999999999985543 8889999999999999985544 8889999999999
Q ss_pred CCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCC
Q 003855 248 GNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDI 327 (791)
Q Consensus 248 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 327 (791)
+|.+++..+ +..+++|++|++++|++++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..
T Consensus 230 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 230 NNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGG
T ss_pred CCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcC
Confidence 999985443 88999999999999999864 5688899999999999999865 46889999999999999999888
Q ss_pred CcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccC
Q 003855 328 PSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLS 372 (791)
Q Consensus 328 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 372 (791)
+..+..+++|+.|++++|++++..| +..+++|+.|++++|+|+
T Consensus 304 ~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 304 MEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8889999999999999999996555 888999999999999986
No 284
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-35 Score=342.02 Aligned_cols=313 Identities=21% Similarity=0.234 Sum_probs=270.9
Q ss_pred CCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCE
Q 003855 11 NLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVA 90 (791)
Q Consensus 11 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 90 (791)
.+.+++.|++++|.+..+++..|.++++|++|+|++|.|+ .+|...+..+++|++|+|++|.|+++.|..|+++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4688999999999999888888999999999999999999 555434445899999999999999999999999999999
Q ss_pred EeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhh
Q 003855 91 LDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQ 170 (791)
Q Consensus 91 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 170 (791)
|+|++|.++.+++..|.++++|+.|++++|.++.++.. .|.++++|++|+|++|.+++..
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~------------ 187 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD--------TFQATTSLQNLQLSSNRLTHVD------------ 187 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT--------TTTTCTTCCEEECTTSCCSBCC------------
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh--------hhhcCCcCcEEECcCCCCCCcC------------
Confidence 99999999998888899999999999999999987643 4899999999999999998531
Q ss_pred hhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCc
Q 003855 171 KFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNK 250 (791)
Q Consensus 171 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 250 (791)
+..+++|+.|++++|.+++. ...++|+.|++++|.++...+.. .++|+.|+|++|.
T Consensus 188 ----------------~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~ 243 (597)
T 3oja_B 188 ----------------LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNN 243 (597)
T ss_dssp ----------------GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSC
T ss_pred ----------------hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCC
Confidence 33467888999999988743 34568999999999988543332 2689999999999
Q ss_pred cCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcc
Q 003855 251 LSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPST 330 (791)
Q Consensus 251 i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 330 (791)
+++ +..+..+++|+.|+|++|.+.+..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..
T Consensus 244 l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~ 319 (597)
T 3oja_B 244 LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERN 319 (597)
T ss_dssp CCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGG
T ss_pred CCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcc
Confidence 985 3678999999999999999998889999999999999999999986 5667788999999999999999 67888
Q ss_pred hhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCC
Q 003855 331 IGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKI 375 (791)
Q Consensus 331 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 375 (791)
+..+++|+.|+|++|+|++. + +..+++|+.|+|++|++.+..
T Consensus 320 ~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 320 QPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp HHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred cccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 99999999999999999854 3 777899999999999998653
No 285
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=7e-37 Score=346.07 Aligned_cols=270 Identities=24% Similarity=0.294 Sum_probs=201.0
Q ss_pred hhccccccccCCCcceEEEEEEec-CCcEEEEEEeehh-hhHHHHHHHHHHHHHHhccCCccceeeeeecc------CCe
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQ-LERAFRSFDSECEVLRNVRHRNLIKILSSCSN------PDF 571 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------~~~ 571 (791)
.++|++.+.||+|+||.||+|... +|+.||||++... .....+.+.+|+.++++++||||+++++++.. .+.
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 378999999999999999999874 7899999998654 24445678999999999999999999998765 677
Q ss_pred eeEEEecCCCCCHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCc---EEEeee
Q 003855 572 KALVLEFMPNGSLEKWLYSHN--YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMA---AHVSDF 646 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~---~kl~Df 646 (791)
.++||||+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+||
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLH----s~gIVHrDLKP~NILl~~~g~~~~vKL~DF 168 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH----ENRIIHRDLKPENIVLQPGPQRLIHKIIDL 168 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHH----HTTBCCCCCCSTTEEEECCSSSCEEEECSC
T ss_pred EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH----HCCCccCCCCHHHeEeecCCCceeEEEccc
Confidence 899999999999999998643 25888999999999999999999 678999999999999997665 999999
Q ss_pred ccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCC-
Q 003855 647 GISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHG- 725 (791)
Q Consensus 647 gla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~- 725 (791)
|+++....... .....||+.|+|||.+.+..++.++|||||||++|||++|+.||..... ...|........
T Consensus 169 G~a~~~~~~~~---~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~----~~~~~~~i~~~~~ 241 (676)
T 3qa8_A 169 GYAKELDQGEL---CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQ----PVQWHGKVREKSN 241 (676)
T ss_dssp CCCCBTTSCCC---CCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCH----HHHSSTTCC----
T ss_pred ccccccccccc---cccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccc----hhhhhhhhhcccc
Confidence 99987654332 2335689999999999999999999999999999999999999965311 111111110000
Q ss_pred ----hhhhcchhhhhhH---HhhHHHHHHHHHHHHHHhhccccCCCCCCCHHH-----HHHHHHHHH
Q 003855 726 ----LTEVVDANLVREE---QAFSAKMDCILSIMDLALDCCIESPDMRINVTD-----AAAKLKKIK 780 (791)
Q Consensus 726 ----~~~~~d~~~~~~~---~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~e-----v~~~L~~~~ 780 (791)
..+.......... ........++..+.+++.+||+.||++|||+.| ..+.+..+.
T Consensus 242 ~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL 308 (676)
T 3qa8_A 242 EHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSIL 308 (676)
T ss_dssp --CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHH
T ss_pred hhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHH
Confidence 0000000000000 000011235678899999999999999999988 445555554
No 286
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.2e-36 Score=317.69 Aligned_cols=241 Identities=34% Similarity=0.592 Sum_probs=227.2
Q ss_pred cCCccccCCCCCCEEEccC-CccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCcccc
Q 003855 182 NIPQEIGNLSGLTLLSLHS-NDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLV 260 (791)
Q Consensus 182 ~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 260 (791)
.+|..|.++++|++|+|++ |.+.+.+|..|..+++|++|+|++|++++.+|..|..+++|++|+|++|.+++.+|..+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 4566788899999999995 999989999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEcCCCcCCCCCCccccCCC-CCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccc
Q 003855 261 SLTSLRELHLGSNKLTSSIPSSLWSLE-YILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLET 339 (791)
Q Consensus 261 ~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 339 (791)
.+++|++|+|++|++++.+|..+..++ +|++|++++|.+++..|..+..++ |+.|++++|.+++..|..|..+++|+.
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence 999999999999999988999999998 999999999999999999999997 999999999999999999999999999
Q ss_pred cccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCCCCCCcCCccccccCCccc
Q 003855 340 LSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVKGSFKNFSVESFFGNYAL 419 (791)
Q Consensus 340 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~ 419 (791)
|+|++|++++.+|. +..+++|+.|+|++|++++.+|..+..+++|+.|++++|++++.+|..+.+++++.+.+.+|+++
T Consensus 226 L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 226 IHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred EECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 99999999966555 88899999999999999999999999999999999999999999999888999999999999999
Q ss_pred cCCCC
Q 003855 420 CGPPK 424 (791)
Q Consensus 420 c~~~~ 424 (791)
||.|.
T Consensus 305 c~~p~ 309 (313)
T 1ogq_A 305 CGSPL 309 (313)
T ss_dssp ESTTS
T ss_pred cCCCC
Confidence 99874
No 287
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=8.1e-36 Score=310.15 Aligned_cols=233 Identities=12% Similarity=0.087 Sum_probs=185.5
Q ss_pred hccccccccCCCcceEEEEEEec-CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEEE
Q 003855 501 DEFNECNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 576 (791)
++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+..+++++||||+++++++.+.+..++||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 67999999999999999999975 58999999997553 344578899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCC
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGE 656 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~ 656 (791)
||+++++|.+++... ....++.+++.|++.||+||| +.+|+||||||+||+++.++.+||+++|
T Consensus 111 e~~~g~~L~~~l~~~---~~~~~~~~i~~ql~~aL~~lH----~~givH~Dikp~NIll~~~g~~kl~~~~--------- 174 (286)
T 3uqc_A 111 EWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAAH----RAGVALSIDHPSRVRVSIDGDVVLAYPA--------- 174 (286)
T ss_dssp ECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCSGGGEEEETTSCEEECSCC---------
T ss_pred EecCCCCHHHHHhcC---CChHHHHHHHHHHHHHHHHHH----HCCCccCCCCcccEEEcCCCCEEEEecc---------
Confidence 999999999999643 355678899999999999999 6789999999999999999999997443
Q ss_pred CcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhh
Q 003855 657 DSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVR 736 (791)
Q Consensus 657 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 736 (791)
|++| ++.++|||||||++|||+||+.||.+........ ........ ....
T Consensus 175 -------------~~~~-------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~------~~~~~~~~----~~~~ 224 (286)
T 3uqc_A 175 -------------TMPD-------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLA------PAERDTAG----QPIE 224 (286)
T ss_dssp -------------CCTT-------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSE------ECCBCTTS----CBCC
T ss_pred -------------ccCC-------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhH------HHHHHhcc----CCCC
Confidence 3333 6789999999999999999999998643221000 00000000 0000
Q ss_pred hHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHh
Q 003855 737 EEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAAKLKKIKVKF 783 (791)
Q Consensus 737 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~~L~~~~~~~ 783 (791)
.......++..+.+++.+||+.||++| |+.|+++.|+++....
T Consensus 225 ---~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~ 267 (286)
T 3uqc_A 225 ---PADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVA 267 (286)
T ss_dssp ---HHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC--
T ss_pred ---hhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccC
Confidence 001112456778899999999999999 9999999999986543
No 288
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=9.5e-36 Score=347.71 Aligned_cols=241 Identities=22% Similarity=0.298 Sum_probs=194.7
Q ss_pred hhccccccccCCCcceEEEEEEec--CCcEEEEEEeehhh-hHHHHHHHHHHHHHHhccCCccceeeeeeccCCe-----
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTIS--DGTDVAIKIFNLQL-ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDF----- 571 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~--~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~----- 571 (791)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+.++++++||||+++++++...+.
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 378999999999999999999975 68999999986432 3445678899999999999999999999976554
Q ss_pred eeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccc
Q 003855 572 KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKL 651 (791)
Q Consensus 572 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~ 651 (791)
.++||||+++++|.+++.. .+++.++..++.||+.||.||| +.+|+||||||+||+++.+ .+||+|||+++.
T Consensus 159 ~~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~aL~~lH----~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~ 230 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPALSYLH----SIGLVYNDLKPENIMLTEE-QLKLIDLGAVSR 230 (681)
T ss_dssp EEEEEECCCCEECC----C---CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECSS-CEEECCCTTCEE
T ss_pred eEEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHHHHHHH----HCCCeecccChHHeEEeCC-cEEEEecccchh
Confidence 6999999999999998765 4899999999999999999999 6789999999999999986 999999999987
Q ss_pred cCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcc
Q 003855 652 LGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVD 731 (791)
Q Consensus 652 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d 731 (791)
.... ....||++|+|||++.++ ++.++|||||||++|||++|..|+........ ..
T Consensus 231 ~~~~------~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~--------------~~--- 286 (681)
T 2pzi_A 231 INSF------GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVDGL--------------PE--- 286 (681)
T ss_dssp TTCC------SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECSSC--------------CT---
T ss_pred cccC------CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCcccccccc--------------cc---
Confidence 6432 334689999999988665 48899999999999999999988765322110 00
Q ss_pred hhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCC-CHHHHHHHHHHHHH
Q 003855 732 ANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRI-NVTDAAAKLKKIKV 781 (791)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RP-t~~ev~~~L~~~~~ 781 (791)
. .....++..+.+++.+||+.||++|| ++.++.+.+..+..
T Consensus 287 -~--------~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~ 328 (681)
T 2pzi_A 287 -D--------DPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLR 328 (681)
T ss_dssp -T--------CHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHH
T ss_pred -c--------ccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHH
Confidence 0 00112345678999999999999999 46667777776644
No 289
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5e-34 Score=304.17 Aligned_cols=289 Identities=21% Similarity=0.273 Sum_probs=191.4
Q ss_pred CCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCccccccccccccccccccccc
Q 003855 37 STMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSLLS 116 (791)
Q Consensus 37 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 116 (791)
.+|+.+++++|.++ .+|..++ ++|++|+|++|.|+++.|..|.++++|++|+|++|+++++.+..|.++++|+.|+
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 36899999999998 8888764 5899999999999988888899999999999999999887777777776666666
Q ss_pred cccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEE
Q 003855 117 QVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLL 196 (791)
Q Consensus 117 l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 196 (791)
+++|+++.++... . ++|++|++++|++++. .+..|.++++|+.|
T Consensus 109 L~~n~l~~l~~~~---------~--~~L~~L~l~~n~i~~~-------------------------~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 109 ISKNHLVEIPPNL---------P--SSLVELRIHDNRIRKV-------------------------PKGVFSGLRNMNCI 152 (332)
T ss_dssp CCSSCCCSCCSSC---------C--TTCCEEECCSSCCCCC-------------------------CSGGGSSCSSCCEE
T ss_pred CCCCcCCccCccc---------c--ccCCEEECCCCccCcc-------------------------CHhHhCCCccCCEE
Confidence 6666666544321 1 4555555555555421 22234455556666
Q ss_pred EccCCccc--cccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCc
Q 003855 197 SLHSNDLN--GTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNK 274 (791)
Q Consensus 197 ~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 274 (791)
++++|.++ +..+..|..+ +|++|++++|+++ + +|..+. ++|++|++++|+
T Consensus 153 ~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~------------------------~-l~~~~~--~~L~~L~l~~n~ 204 (332)
T 2ft3_A 153 EMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT------------------------G-IPKDLP--ETLNELHLDHNK 204 (332)
T ss_dssp ECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS------------------------S-CCSSSC--SSCSCCBCCSSC
T ss_pred ECCCCccccCCCCcccccCC-ccCEEECcCCCCC------------------------c-cCcccc--CCCCEEECCCCc
Confidence 66666553 2344444444 5555555555554 2 222222 456666666666
Q ss_pred CCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcc
Q 003855 275 LTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPES 354 (791)
Q Consensus 275 l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 354 (791)
+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+|++..+..
T Consensus 205 i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH
Confidence 66555556666666666666666666655556666667777777777776 56666667777777777777777555555
Q ss_pred cCC------CCCCcEEEccCCccC--CCCchhhhhcccCceEEccCCC
Q 003855 355 VGS------LISLESLDLSGNNLS--GKIPKSLETLSQLKQFNVSHNR 394 (791)
Q Consensus 355 ~~~------l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~l~l~~N~ 394 (791)
|.. ..+|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 544 357888999999887 6777888888999999988875
No 290
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.3e-34 Score=303.99 Aligned_cols=299 Identities=22% Similarity=0.304 Sum_probs=223.5
Q ss_pred cCCccccCC------CCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceec
Q 003855 4 QIPTEIGNL------QNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGI 77 (791)
Q Consensus 4 ~lp~~~~~l------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~ 77 (791)
++|..+... .+++.++++++.++ .+|..+. ++|++|+|++|.++ .++...+..+++|++|+|++|.|+++
T Consensus 18 ~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 93 (332)
T 2ft3_A 18 SLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKI 93 (332)
T ss_dssp -------CCCCSSCEEETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred cCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCcc
Confidence 466655443 37999999999998 5576664 69999999999998 55544444489999999999999999
Q ss_pred CCccCcCCCCCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCccc
Q 003855 78 IPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGI 157 (791)
Q Consensus 78 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 157 (791)
.|..|.++++|++|+|++|+++.+....+ ++|+.|++++|+++.++... |.++++|+.|++++|.++..
T Consensus 94 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~--------~~~l~~L~~L~l~~n~l~~~ 162 (332)
T 2ft3_A 94 HEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGV--------FSGLRNMNCIEMGGNPLENS 162 (332)
T ss_dssp CGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGG--------GSSCSSCCEEECCSCCCBGG
T ss_pred CHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhH--------hCCCccCCEEECCCCccccC
Confidence 89999999999999999999996665554 79999999999999876543 88999999999999999731
Q ss_pred CChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccc
Q 003855 158 LPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCH 237 (791)
Q Consensus 158 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 237 (791)
+..+..+..+ +|+.|++++|++++ +|..+. ++|++|+|++|.+++..+..|..
T Consensus 163 -----------------------~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~ 215 (332)
T 2ft3_A 163 -----------------------GFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLR 215 (332)
T ss_dssp -----------------------GSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTT
T ss_pred -----------------------CCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcC
Confidence 1345567777 99999999999996 444443 78999999999998777778888
Q ss_pred cCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccC------C
Q 003855 238 LKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKL------K 311 (791)
Q Consensus 238 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l------~ 311 (791)
+++|+.|+|++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|.|++..+..|... .
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence 888888888888888777777888888888888888887 566667777777777777777776655555432 3
Q ss_pred CCCEEecCCcccC--CCCCcchhccccccccccccc
Q 003855 312 VLTVLDLSRNQLS--GDIPSTIGALKDLETLSLARN 345 (791)
Q Consensus 312 ~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~L~~N 345 (791)
.|+.|++++|.+. +..|..|..+++|+.|++++|
T Consensus 295 ~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 4555555555554 333444444444444444444
No 291
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=4.9e-36 Score=328.83 Aligned_cols=239 Identities=15% Similarity=0.153 Sum_probs=180.5
Q ss_pred hccccccccCCCcceEEEEEEe-cCCcEEEEEEeehhh---hHHHHHHHHHHHHHHhccC-Cccceeeee----------
Q 003855 501 DEFNECNLLGTGSFGSVYKGTI-SDGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVRH-RNLIKILSS---------- 565 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h-~niv~l~~~---------- 565 (791)
..|...+.||+|+||.||+|++ .+|+.||||++.... ....+.+.+|+.+++.++| +|......+
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV 157 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence 4577889999999999999995 479999999987332 2335678899999999976 322211111
Q ss_pred -----------ecc-----CCeeeEEEecCCCCCHHHHHh------hCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCe
Q 003855 566 -----------CSN-----PDFKALVLEFMPNGSLEKWLY------SHNYFLDILERLNIMIDVGSALEYLHHGHSSAPI 623 (791)
Q Consensus 566 -----------~~~-----~~~~~lv~e~~~~g~L~~~l~------~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i 623 (791)
+.. ....+++|+++ +++|.+++. .....+++..+..++.|+++||+||| +.+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~i 232 (413)
T 3dzo_A 158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH----HYGL 232 (413)
T ss_dssp ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH----HTTE
T ss_pred ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH----hCCc
Confidence 111 22356777766 689999985 22445788899999999999999999 6789
Q ss_pred EecCCCCCCeEeCCCCcEEEeeeccccccCCCCCcceeecccccccccCCCcc----------CCCCCCccccHHhHHHH
Q 003855 624 IHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYG----------SEGIVSAKCDVYSYGVL 693 (791)
Q Consensus 624 ~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~----------~~~~~~~~~Dv~s~G~v 693 (791)
+||||||+|||++.++.+||+|||+++..... ....+| +.|+|||++ .+..++.++|||||||+
T Consensus 233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvi 306 (413)
T 3dzo_A 233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLA 306 (413)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHH
T ss_pred ccCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHH
Confidence 99999999999999999999999999865322 334567 999999988 66678999999999999
Q ss_pred HHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHH
Q 003855 694 LMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAA 773 (791)
Q Consensus 694 l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~ 773 (791)
+|||+||+.||......+. ...+ +. ....++..+.+++.+||+.||++||++.|++
T Consensus 307 l~elltg~~Pf~~~~~~~~-------------~~~~----~~-------~~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l 362 (413)
T 3dzo_A 307 IYWIWCADLPNTDDAALGG-------------SEWI----FR-------SCKNIPQPVRALLEGFLRYPKEDRLLPLQAM 362 (413)
T ss_dssp HHHHHHSSCCCCTTGGGSC-------------SGGG----GS-------SCCCCCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred HHHHHHCCCCCCCcchhhh-------------HHHH----Hh-------hcccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 9999999999976322111 0000 00 0012446688999999999999999987775
Q ss_pred H
Q 003855 774 A 774 (791)
Q Consensus 774 ~ 774 (791)
+
T Consensus 363 ~ 363 (413)
T 3dzo_A 363 E 363 (413)
T ss_dssp T
T ss_pred h
Confidence 4
No 292
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=6.4e-35 Score=306.28 Aligned_cols=230 Identities=21% Similarity=0.292 Sum_probs=178.9
Q ss_pred hhccccc-cccCCCcceEEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHH-HhccCCccceeeeeecc----CCee
Q 003855 500 TDEFNEC-NLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVL-RNVRHRNLIKILSSCSN----PDFK 572 (791)
Q Consensus 500 ~~~~~~~-~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l-~~l~h~niv~l~~~~~~----~~~~ 572 (791)
.++|.+. +.||+|+||.||+|... +++.||+|++... ..+.+|+.++ +..+||||+++++++.. ....
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 90 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 90 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceE
Confidence 3567776 78999999999999974 7899999998643 3456788887 55599999999999876 6778
Q ss_pred eEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCC---CCcEEEeeecc
Q 003855 573 ALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDE---NMAAHVSDFGI 648 (791)
Q Consensus 573 ~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~---~~~~kl~Dfgl 648 (791)
++||||+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||+
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~ 166 (299)
T 3m2w_A 91 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH----SINIAHRDVKPENLLYTSKRPNAILKLTDFGF 166 (299)
T ss_dssp EEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEESSSSTTCCEEECCCTT
T ss_pred EEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH----hCCcccCCCCHHHEEEecCCCCCcEEEecccc
Confidence 99999999999999998654 35899999999999999999999 678999999999999998 78999999999
Q ss_pred ccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccCcchHHHHHHHhcCCChhh
Q 003855 649 SKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTE 728 (791)
Q Consensus 649 a~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (791)
|+... +..++.++||||+||++|||++|+.||........ .........
T Consensus 167 a~~~~------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~------~~~~~~~~~- 215 (299)
T 3m2w_A 167 AKETT------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI------SPGMKTRIR- 215 (299)
T ss_dssp CEECT------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------------CCSCCSSC-
T ss_pred ccccc------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhh------hHHHHHHHh-
Confidence 86532 23467899999999999999999999965322110 000000000
Q ss_pred hcchhhhhhHHhhHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHH
Q 003855 729 VVDANLVREEQAFSAKMDCILSIMDLALDCCIESPDMRINVTDAAA 774 (791)
Q Consensus 729 ~~d~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPt~~ev~~ 774 (791)
..... ...+....++.++.+++.+||+.||++|||+.|+++
T Consensus 216 --~~~~~---~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 216 --MGQYE---FPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp --TTCCS---SCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred --hcccc---CCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 00000 000111245677899999999999999999999987
No 293
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.2e-33 Score=301.15 Aligned_cols=290 Identities=21% Similarity=0.262 Sum_probs=185.0
Q ss_pred CCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCccccccccccccccccccccc
Q 003855 37 STMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSLLS 116 (791)
Q Consensus 37 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 116 (791)
.+|+.++++++.++ .+|..+. ++|++|+|++|.|+++.+..|.++++|++|+|++|+++++.+..|.++++|+.|+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 46888888888887 8887653 5888889999988877777888888899999988888877777777766666666
Q ss_pred cccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEE
Q 003855 117 QVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLL 196 (791)
Q Consensus 117 l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 196 (791)
+++|+++.++... .++|++|++++|++++. .+..|.++++|+.|
T Consensus 107 Ls~n~l~~l~~~~-----------~~~L~~L~l~~n~l~~~-------------------------~~~~~~~l~~L~~L 150 (330)
T 1xku_A 107 LSKNQLKELPEKM-----------PKTLQELRVHENEITKV-------------------------RKSVFNGLNQMIVV 150 (330)
T ss_dssp CCSSCCSBCCSSC-----------CTTCCEEECCSSCCCBB-------------------------CHHHHTTCTTCCEE
T ss_pred CCCCcCCccChhh-----------cccccEEECCCCccccc-------------------------CHhHhcCCccccEE
Confidence 6666666544221 14555555555555432 22334555666666
Q ss_pred EccCCcccc--ccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCc
Q 003855 197 SLHSNDLNG--TISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNK 274 (791)
Q Consensus 197 ~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 274 (791)
++++|.++. ..+..|..+++|++|++++|.++. +|.. +. ++|++|++++|+
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~------------------------~~--~~L~~L~l~~n~ 203 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG------------------------LP--PSLTELHLDGNK 203 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS------------------------CC--TTCSEEECTTSC
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcc------------------------cc--ccCCEEECCCCc
Confidence 666666642 444555555555555555555552 2222 21 455555555555
Q ss_pred CCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcc
Q 003855 275 LTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPES 354 (791)
Q Consensus 275 l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 354 (791)
+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|+|++|+++ .+|..+..+++|++|++++|+|++..+..
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhh
Confidence 55555555555555666666666555555555666666666666666666 55555666666666666666666554444
Q ss_pred cCC------CCCCcEEEccCCccCC--CCchhhhhcccCceEEccCCC
Q 003855 355 VGS------LISLESLDLSGNNLSG--KIPKSLETLSQLKQFNVSHNR 394 (791)
Q Consensus 355 ~~~------l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~l~l~~N~ 394 (791)
|.. ...|+.|++++|++.. ..|..|..+++++.+++++|+
T Consensus 283 f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 432 3678888888888863 567788888888888888885
No 294
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4e-33 Score=297.06 Aligned_cols=292 Identities=21% Similarity=0.257 Sum_probs=224.8
Q ss_pred CCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEE
Q 003855 12 LQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVAL 91 (791)
Q Consensus 12 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 91 (791)
..++++++++++.++ .+|..+. ++|++|+|++|+++ .+|...+..+++|++|+|++|.++++.|..|.++++|++|
T Consensus 30 ~c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 30 QCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp EEETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred cCCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 348999999999998 4566664 68999999999998 6666444558999999999999998889999999999999
Q ss_pred eccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhh
Q 003855 92 DLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQK 171 (791)
Q Consensus 92 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 171 (791)
+|++|+++.+....+ ++|+.|++++|+++.++.. .|.++++|+.|++++|.++..
T Consensus 106 ~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~l~~~-------------- 160 (330)
T 1xku_A 106 YLSKNQLKELPEKMP---KTLQELRVHENEITKVRKS--------VFNGLNQMIVVELGTNPLKSS-------------- 160 (330)
T ss_dssp ECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHH--------HHTTCTTCCEEECCSSCCCGG--------------
T ss_pred ECCCCcCCccChhhc---ccccEEECCCCcccccCHh--------HhcCCccccEEECCCCcCCcc--------------
Confidence 999999996655544 7899999999999976643 388999999999999998731
Q ss_pred hhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCcc
Q 003855 172 FYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKL 251 (791)
Q Consensus 172 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i 251 (791)
+..+..|.++++|+.|++++|.++. +|..+. ++|++|+|++|++++..|..|..+++|+.|+|++|.+
T Consensus 161 ---------~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 228 (330)
T 1xku_A 161 ---------GIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228 (330)
T ss_dssp ---------GBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred ---------CcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 1345667888999999999999985 444433 7899999999999877788888888888888888888
Q ss_pred CCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccC------CCCCEEecCCcccCC
Q 003855 252 SGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKL------KVLTVLDLSRNQLSG 325 (791)
Q Consensus 252 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l------~~L~~L~l~~N~l~~ 325 (791)
++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+|++..+..|+.. ..|+.|++++|.+..
T Consensus 229 ~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred ceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 8777777888888888888888887 566677777888888888888776665555432 455556666665542
Q ss_pred --CCCcchhccccccccccccc
Q 003855 326 --DIPSTIGALKDLETLSLARN 345 (791)
Q Consensus 326 --~~~~~~~~l~~L~~L~L~~N 345 (791)
..|..|..+.+++.++|++|
T Consensus 308 ~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 308 WEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGSCGGGGTTCCCGGGEEC---
T ss_pred cccCccccccccceeEEEeccc
Confidence 23344444444444444444
No 295
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=4.5e-35 Score=312.93 Aligned_cols=243 Identities=19% Similarity=0.217 Sum_probs=183.9
Q ss_pred hhccccccccCCCcceEEEEEEecCCcEEEEEEeehhh--------hHHHHHHHHHHHHHHhcc----------------
Q 003855 500 TDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQL--------ERAFRSFDSECEVLRNVR---------------- 555 (791)
Q Consensus 500 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~---------------- 555 (791)
.++|++.+.||+|+||.||+|+. +|+.||||++.... ....+.+.+|+.++++++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 47899999999999999999998 78999999997542 223467888999999886
Q ss_pred ----------CCccceeeeeecc-------------CCeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q 003855 556 ----------HRNLIKILSSCSN-------------PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALE 612 (791)
Q Consensus 556 ----------h~niv~l~~~~~~-------------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ 612 (791)
||||+++++++.+ ....++||||+++|++.+.+.+ ..+++..+..++.||+.||+
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~--~~~~~~~~~~i~~qi~~aL~ 175 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT--KLSSLATAKSILHQLTASLA 175 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT--TCCCHHHHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh--cCCCHHHHHHHHHHHHHHHH
Confidence 5666666666654 7889999999999977766654 34899999999999999999
Q ss_pred HHHccCCCCCeEecCCCCCCeEeCCCC--------------------cEEEeeeccccccCCCCCcceeecccccccccC
Q 003855 613 YLHHGHSSAPIIHCDLKPTNILLDENM--------------------AAHVSDFGISKLLGEGEDSVTQTMTMATIGYMA 672 (791)
Q Consensus 613 ~LH~~~~~~~i~H~dlk~~Nill~~~~--------------------~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~a 672 (791)
|||+ +.+|+||||||+|||++.++ .+||+|||+|+..... ..+||+.|+|
T Consensus 176 ~lH~---~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-------~~~gt~~y~a 245 (336)
T 2vuw_A 176 VAEA---SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-------IVVFCDVSMD 245 (336)
T ss_dssp HHHH---HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-------EEECCCCTTC
T ss_pred HHHH---hCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-------cEEEeecccC
Confidence 9992 24799999999999999887 8999999999876432 2468999999
Q ss_pred CCccCCCCCCccccHHhHHHH-HHHHHhCCCCCCccccCcchHHHHHHHhcCCChhhhcchhhhhhHHhhHHHHHHHHHH
Q 003855 673 PEYGSEGIVSAKCDVYSYGVL-LMETFTRKRPTDEMFTGEMSLRRWVKESLPHGLTEVVDANLVREEQAFSAKMDCILSI 751 (791)
Q Consensus 673 PE~~~~~~~~~~~Dv~s~G~v-l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l 751 (791)
||++.+.. +.++||||+|++ .+++++|..||..................... .........++.++
T Consensus 246 PE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~s~~~ 312 (336)
T 2vuw_A 246 EDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKT------------KCNTPAMKQIKRKI 312 (336)
T ss_dssp SGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCCCSS------------CCCSHHHHHHHHHH
T ss_pred hhhhcCCC-ccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhccCc------------ccchhhhhhcCHHH
Confidence 99988665 899999998777 77888899997531000000000000000000 00011233577889
Q ss_pred HHHHhhccccCCCCCCCHHHHH
Q 003855 752 MDLALDCCIESPDMRINVTDAA 773 (791)
Q Consensus 752 ~~li~~cl~~~P~~RPt~~ev~ 773 (791)
.+++.+||+.| |+.|++
T Consensus 313 ~dli~~~L~~d-----sa~e~l 329 (336)
T 2vuw_A 313 QEFHRTMLNFS-----SATDLL 329 (336)
T ss_dssp HHHHHHGGGSS-----SHHHHH
T ss_pred HHHHHHHhccC-----CHHHHH
Confidence 99999999966 888887
No 296
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.5e-34 Score=303.23 Aligned_cols=253 Identities=28% Similarity=0.452 Sum_probs=229.9
Q ss_pred CCCcEEEccCCCCcc--cCChhhhhhhhhhhhhhccc-ccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCC
Q 003855 142 RNLTILSFGSNPLGG--ILPPVIGNFSASLQKFYAYE-CKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQ 218 (791)
Q Consensus 142 ~~L~~L~L~~N~l~~--~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 218 (791)
.+++.|+|++|.+++ .+|+.+..+ +.|++|++++ |.+.+.+|..|.++++|++|+|++|++++..|..|..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467777777777777 677776665 4577777774 777778888899999999999999999989999999999999
Q ss_pred EEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCC-CCcEEEcCCCcCCCCCCccccCCCCCCeEEccCC
Q 003855 219 GLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLT-SLRELHLGSNKLTSSIPSSLWSLEYILDINLSSN 297 (791)
Q Consensus 219 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 297 (791)
+|+|++|.+++.+|..+..+++|++|+|++|++++.+|..+..++ +|++|++++|++++..|..+..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999999999999999999999999999999988999999998 999999999999989999999987 999999999
Q ss_pred cCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCch
Q 003855 298 SLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPK 377 (791)
Q Consensus 298 ~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 377 (791)
.+++..|..|..+++|+.|+|++|.+++..|. +..+++|++|+|++|++++.+|..+..+++|+.|+|++|++++.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99999999999999999999999999966655 88899999999999999999999999999999999999999999998
Q ss_pred hhhhcccCceEEccCCC-Cccc
Q 003855 378 SLETLSQLKQFNVSHNR-LEGE 398 (791)
Q Consensus 378 ~~~~l~~L~~l~l~~N~-l~~~ 398 (791)
. ..+++|+.+++++|+ ++|.
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEEST
T ss_pred C-ccccccChHHhcCCCCccCC
Confidence 7 889999999999999 5553
No 297
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.4e-36 Score=339.90 Aligned_cols=360 Identities=18% Similarity=0.172 Sum_probs=245.4
Q ss_pred CCCCeeecCCCcccccCCcc-ccCCCCCcEEeCCCCcCcc----cCCchhhhcCCCccEEEccCCcceecCCccC-cCCC
Q 003855 13 QNLQYLVFAENNLSGLVPPT-IFNISTMRILTLEGNQLSG----RLPSTVGHLLPNIESLLLAANNLTGIIPHSI-TNAT 86 (791)
Q Consensus 13 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~----~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~ 86 (791)
++|++|+|++|+++...... +..+++|++|+|++|++++ .++..+.. +++|++|+|++|.+++..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV-NPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHT-CTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHh-CCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 56788888888887554443 6778888888888888873 23444444 6888888888888875443333 2344
Q ss_pred ----CCCEEeccCccccc----cccccccccccccccccccccccccCCCccccccccc-cCCCCCCcEEEccCCCCccc
Q 003855 87 ----KLVALDLGFNSFAG----HILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSS-LTNCRNLTILSFGSNPLGGI 157 (791)
Q Consensus 87 ----~L~~L~L~~N~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~-l~~l~~L~~L~L~~N~l~~~ 157 (791)
+|++|+|++|+++. ..+..|..+++|+.|++++|.++...... +... ...+++|++|++++|++++.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~----l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL----LCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH----HHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH----HHHHHhcCCCcceEEECCCCCCCHH
Confidence 68888888888874 33666777777777777777776432111 1111 22355677777777777653
Q ss_pred CChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCcccc-----CCCCCCEEEcccccCccc--
Q 003855 158 LPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMG-----RLKRLQGLSLRNNNLEGS-- 230 (791)
Q Consensus 158 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~-- 230 (791)
....+ +..+..+++|+.|+|++|.++...+..+. .+++|++|+|++|.+++.
T Consensus 158 ~~~~l---------------------~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 158 SCEPL---------------------ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp GHHHH---------------------HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred HHHHH---------------------HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence 32222 33455667788888888887654444443 256788888888887753
Q ss_pred --CCccccccCCCceEEecCCccCCCC-----CccccCCCCCcEEEcCCCcCCCC----CCccccCCCCCCeEEccCCcC
Q 003855 231 --IPYDLCHLKLMFGIRLTGNKLSGHI-----PPCLVSLTSLRELHLGSNKLTSS----IPSSLWSLEYILDINLSSNSL 299 (791)
Q Consensus 231 --~~~~~~~l~~L~~L~L~~N~i~~~~-----~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~i 299 (791)
++..+..+++|+.|++++|.+++.. +..+..+++|++|++++|+++.. ++..+..+++|++|++++|.+
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 3566677788888888888776432 22233577888888888888753 455666678888888888888
Q ss_pred cccCCccccc-----CCCCCEEecCCcccCCC----CCcchhccccccccccccccCCCCCCcccCC-----CCCCcEEE
Q 003855 300 NDSLPSNVQK-----LKVLTVLDLSRNQLSGD----IPSTIGALKDLETLSLARNQFQGPIPESVGS-----LISLESLD 365 (791)
Q Consensus 300 ~~~~~~~~~~-----l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~ 365 (791)
++..+..+.. .++|+.|++++|.+++. ++..+..+++|++|++++|++++..+..+.. .++|+.|+
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence 6554444433 25788888888888754 3455666788888888888887544444432 56888888
Q ss_pred ccCCccCC----CCchhhhhcccCceEEccCCCCccc
Q 003855 366 LSGNNLSG----KIPKSLETLSQLKQFNVSHNRLEGE 398 (791)
Q Consensus 366 l~~N~l~~----~~~~~~~~l~~L~~l~l~~N~l~~~ 398 (791)
|++|++++ .+|..+..+++|++|++++|++++.
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 88888875 6777888888888888888888764
No 298
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.8e-36 Score=337.43 Aligned_cols=365 Identities=20% Similarity=0.150 Sum_probs=231.9
Q ss_pred ccCCCCCCeeecCCCcccc----cCCccccCCCCCcEEeCCCCcCcccCCchhhhcCC----CccEEEccCCccee----
Q 003855 9 IGNLQNLQYLVFAENNLSG----LVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLP----NIESLLLAANNLTG---- 76 (791)
Q Consensus 9 ~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~----~L~~L~L~~N~l~~---- 76 (791)
+..+++|++|+|++|+++. .++..+..+++|++|+|++|.+++..+..++..++ +|++|+|++|.|+.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 6788999999999999974 35778888999999999999998655666666666 79999999999994
Q ss_pred cCCccCcCCCCCCEEeccCccccccccccccc-----cccccccccccccccccCCCccccccccccCCCCCCcEEEccC
Q 003855 77 IIPHSITNATKLVALDLGFNSFAGHILNTFGN-----LRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGS 151 (791)
Q Consensus 77 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 151 (791)
.++..|..+++|++|+|++|.++...+..+.. .++|+.|++++|+++..... .++..+..+++|++|++++
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~----~l~~~l~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE----PLASVLRAKPDFKELTVSN 179 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH----HHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH----HHHHHHhhCCCCCEEECcC
Confidence 45889999999999999999998665554433 56899999999999864321 1344577789999999999
Q ss_pred CCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccc----cCccccCCCCCCEEEcccccC
Q 003855 152 NPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGT----ISPTMGRLKRLQGLSLRNNNL 227 (791)
Q Consensus 152 N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l 227 (791)
|.+++..+..+..... ...++|+.|+|++|.++.. ++..+..+++|++|+|++|.+
T Consensus 180 n~i~~~~~~~l~~~l~--------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 180 NDINEAGVRVLCQGLK--------------------DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp SBCHHHHHHHHHHHHH--------------------HSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred CCcchHHHHHHHHHHh--------------------cCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 9998654444433211 1233555555555555532 234444555555555555555
Q ss_pred cccC-----CccccccCCCceEEecCCccCCC----CCccccCCCCCcEEEcCCCcCCCCCCccccC-----CCCCCeEE
Q 003855 228 EGSI-----PYDLCHLKLMFGIRLTGNKLSGH----IPPCLVSLTSLRELHLGSNKLTSSIPSSLWS-----LEYILDIN 293 (791)
Q Consensus 228 ~~~~-----~~~~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~ 293 (791)
++.. +..+..+++|+.|++++|.++.. ++..+..+++|++|++++|.+++..+..+.. .++|++|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 4322 11122355555666666555532 3444555566666666666654332222221 24566666
Q ss_pred ccCCcCccc----CCcccccCCCCCEEecCCcccCCCCCcchhc-----cccccccccccccCCC----CCCcccCCCCC
Q 003855 294 LSSNSLNDS----LPSNVQKLKVLTVLDLSRNQLSGDIPSTIGA-----LKDLETLSLARNQFQG----PIPESVGSLIS 360 (791)
Q Consensus 294 l~~N~i~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~----~~~~~~~~l~~ 360 (791)
+++|.+++. ++..+..+++|+.|++++|.+++..+..+.. .++|+.|++++|++++ .+|..+..+++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 666666543 3344555566666666666665444443332 4566666666666664 45555566666
Q ss_pred CcEEEccCCccCCCCchhhhh-----cccCceEEccCCCCcc
Q 003855 361 LESLDLSGNNLSGKIPKSLET-----LSQLKQFNVSHNRLEG 397 (791)
Q Consensus 361 L~~L~l~~N~l~~~~~~~~~~-----l~~L~~l~l~~N~l~~ 397 (791)
|+.|+|++|++++.....+.. ..+|+.|++.++.+..
T Consensus 400 L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred ccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 666666666665432222221 2246666666665543
No 299
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.3e-30 Score=272.55 Aligned_cols=279 Identities=19% Similarity=0.215 Sum_probs=144.1
Q ss_pred EEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCccccccc--cccccccccccccccc
Q 003855 41 ILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHI--LNTFGNLRHLSLLSQV 118 (791)
Q Consensus 41 ~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~l~ 118 (791)
.++++++.++ .+|..+. ++|++|+|++|.++.+.+..|.++++|++|+|++|+++... +..+.++++|+.|+++
T Consensus 11 ~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 4455555554 4444332 34555555555555433334455555555555555544221 2333344444444444
Q ss_pred cccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEc
Q 003855 119 MNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSL 198 (791)
Q Consensus 119 ~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 198 (791)
+|.++.++ ..+..+++|++|++++|++++..+ ...+..+++|++|++
T Consensus 87 ~n~i~~l~---------~~~~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~~l~~L~~L~l 133 (306)
T 2z66_A 87 FNGVITMS---------SNFLGLEQLEHLDFQHSNLKQMSE------------------------FSVFLSLRNLIYLDI 133 (306)
T ss_dssp SCSEEEEE---------EEEETCTTCCEEECTTSEEESSTT------------------------TTTTTTCTTCCEEEC
T ss_pred CCccccCh---------hhcCCCCCCCEEECCCCccccccc------------------------chhhhhccCCCEEEC
Confidence 44444321 224445555555555555543211 123445555666666
Q ss_pred cCCccccccCccccCCCCCCEEEcccccCcc-cCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCC
Q 003855 199 HSNDLNGTISPTMGRLKRLQGLSLRNNNLEG-SIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTS 277 (791)
Q Consensus 199 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 277 (791)
++|.+++..+..|..+++|++|+|++|.+++ ..|..+..+++|+.|+|++|++++..|..+..+++|++|+|++|++++
T Consensus 134 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp TTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 6666655555555666666666666666554 345555566666666666666655555556666666666666666665
Q ss_pred CCCccccCCCCCCeEEccCCcCcccCCcccccCC-CCCEEecCCcccCCCCC--cchhccccccccccccccCCCCCCcc
Q 003855 278 SIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLK-VLTVLDLSRNQLSGDIP--STIGALKDLETLSLARNQFQGPIPES 354 (791)
Q Consensus 278 ~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~ 354 (791)
..+..+..+++|+.|++++|.+++..|..+..++ +|+.|+|++|.+++..+ .....+...+.+....+.+....|..
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 5555556666666666666666665666666553 66666666666654321 11222333444444444444444443
Q ss_pred cC
Q 003855 355 VG 356 (791)
Q Consensus 355 ~~ 356 (791)
+.
T Consensus 294 ~~ 295 (306)
T 2z66_A 294 KQ 295 (306)
T ss_dssp GT
T ss_pred hC
Confidence 33
No 300
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.6e-30 Score=273.83 Aligned_cols=278 Identities=21% Similarity=0.242 Sum_probs=177.7
Q ss_pred cEEEccCCcceecCCccCcCCCCCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCC
Q 003855 65 ESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNL 144 (791)
Q Consensus 65 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L 144 (791)
+.++.+++.++ .+|..+. ++|++|+|++|+++.+....|. ++++|
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~--------------------------------~l~~L 54 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFD--------------------------------KLTQL 54 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTT--------------------------------TCTTC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhh--------------------------------ccccC
Confidence 46677777777 3444433 4677777777776654444444 44555
Q ss_pred cEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEccc
Q 003855 145 TILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRN 224 (791)
Q Consensus 145 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 224 (791)
++|+|++|+++... ..+..+..+++|++|+|++|.++. .+..+..+++|++|++++
T Consensus 55 ~~L~L~~n~l~~~~-----------------------~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~ 110 (306)
T 2z66_A 55 TKLSLSSNGLSFKG-----------------------CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 110 (306)
T ss_dssp SEEECCSSCCCEEE-----------------------EEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTT
T ss_pred CEEECCCCccCccc-----------------------CcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCC
Confidence 55555555554210 112233345666666666666663 344466666666666666
Q ss_pred ccCcccCC-ccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCC-CCCccccCCCCCCeEEccCCcCccc
Q 003855 225 NNLEGSIP-YDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTS-SIPSSLWSLEYILDINLSSNSLNDS 302 (791)
Q Consensus 225 N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~i~~~ 302 (791)
|++++..+ ..+..+++|+.|++++|.+.+..+..+.++++|++|++++|++.+ ..|..+..+++|++|++++|.+++.
T Consensus 111 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp SEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc
Confidence 66664433 456666666666666666666666666777777777777777765 4566677777777777777777766
Q ss_pred CCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCC-CCcEEEccCCccCCCCc--hhh
Q 003855 303 LPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLI-SLESLDLSGNNLSGKIP--KSL 379 (791)
Q Consensus 303 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~--~~~ 379 (791)
.|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..|..+..++ +|+.|+|++|++++..+ ...
T Consensus 191 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~ 270 (306)
T 2z66_A 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 270 (306)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHH
T ss_pred CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHH
Confidence 677777777777777777777766666677777888888888888777777777774 78888888888875432 223
Q ss_pred hhcccCceEEccCCCCcccCCC
Q 003855 380 ETLSQLKQFNVSHNRLEGEIPV 401 (791)
Q Consensus 380 ~~l~~L~~l~l~~N~l~~~~~~ 401 (791)
..+...+.+.+..+.+.|..|.
T Consensus 271 ~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 271 QWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp HHHHHTGGGBSCGGGCBEEESG
T ss_pred HHHHhhhhhhccccccccCCch
Confidence 3344555556666666666554
No 301
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=7.9e-31 Score=281.99 Aligned_cols=283 Identities=20% Similarity=0.223 Sum_probs=184.8
Q ss_pred CCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCcccccccccccccccccccc
Q 003855 36 ISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSLL 115 (791)
Q Consensus 36 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 115 (791)
.+.....++++|+++ .+|..+. ++|++|+|++|.|+++.+..|.++++|++|+|++|+++++.+..|.++++|+.|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 345556777777777 7777554 477888888888877666677778888888888887777666666666666666
Q ss_pred ccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCE
Q 003855 116 SQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTL 195 (791)
Q Consensus 116 ~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 195 (791)
++++|+++.++... |.++++|++|++++|++++..+ ...|.++++|++
T Consensus 106 ~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~l~~------------------------~~~~~~l~~L~~ 153 (353)
T 2z80_A 106 DLSYNYLSNLSSSW--------FKPLSSLTFLNLLGNPYKTLGE------------------------TSLFSHLTKLQI 153 (353)
T ss_dssp ECCSSCCSSCCHHH--------HTTCTTCSEEECTTCCCSSSCS------------------------SCSCTTCTTCCE
T ss_pred ECCCCcCCcCCHhH--------hCCCccCCEEECCCCCCcccCc------------------------hhhhccCCCCcE
Confidence 66666666544222 5566666666666666653210 024556667777
Q ss_pred EEccCC-ccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCc
Q 003855 196 LSLHSN-DLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNK 274 (791)
Q Consensus 196 L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 274 (791)
|++++| .++...+..|..+++|++|++++|++++..|..+..+++|+.|++++|+++...+..+..+++|+.|++++|+
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 777776 3555556666677777777777777766666666666667777777766653333333446666666666666
Q ss_pred CCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCC----CCCcchhccccccccccccccCCCC
Q 003855 275 LTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSG----DIPSTIGALKDLETLSLARNQFQGP 350 (791)
Q Consensus 275 l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~ 350 (791)
+++..+..+.. ......++.+++++|.+.+ .+|..+..+++|+.|++++|+++ .
T Consensus 234 l~~~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~ 291 (353)
T 2z80_A 234 LDTFHFSELST---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-S 291 (353)
T ss_dssp CTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-C
T ss_pred ccccccccccc---------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-c
Confidence 66443322211 1123345555555555543 35667888889999999999998 4
Q ss_pred CCcc-cCCCCCCcEEEccCCccCCCCc
Q 003855 351 IPES-VGSLISLESLDLSGNNLSGKIP 376 (791)
Q Consensus 351 ~~~~-~~~l~~L~~L~l~~N~l~~~~~ 376 (791)
+|.. |..+++|+.|+|++|++.+..|
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 5554 6889999999999999997654
No 302
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=281.15 Aligned_cols=282 Identities=17% Similarity=0.200 Sum_probs=207.4
Q ss_pred ccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCC
Q 003855 7 TEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNAT 86 (791)
Q Consensus 7 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 86 (791)
+.-..++.....++++++++ .+|..+. ++|++|+|++|+++ .+|...+..+++|++|+|++|.|+++.|..|.+++
T Consensus 25 ~~~~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 25 QASLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp --CCEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred ccCCCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 34445667778999999998 4566665 48999999999998 67765455589999999999999998899999999
Q ss_pred CCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCC-CcccCChhhhhh
Q 003855 87 KLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNP-LGGILPPVIGNF 165 (791)
Q Consensus 87 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~ 165 (791)
+|++|+|++|+++++.+..|.++++|++|++++|+++.++.. ..+..+++|++|++++|+ ++..
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-------~~~~~l~~L~~L~l~~n~~~~~~-------- 165 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET-------SLFSHLTKLQILRVGNMDTFTKI-------- 165 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS-------CSCTTCTTCCEEEEEESSSCCEE--------
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch-------hhhccCCCCcEEECCCCcccccc--------
Confidence 999999999999988888899999999999999999977641 238899999999999994 5532
Q ss_pred hhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEE
Q 003855 166 SASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIR 245 (791)
Q Consensus 166 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 245 (791)
.+..|.++++|+.|++++|++++..|..|..+++|++|++++|+++...+..+..+++|+.|+
T Consensus 166 -----------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 166 -----------------QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228 (353)
T ss_dssp -----------------CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEE
T ss_pred -----------------CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEE
Confidence 345577888999999999999988888999999999999999998754444556688999999
Q ss_pred ecCCccCCCCCcccc---CCCCCcEEEcCCCcCCC----CCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEec
Q 003855 246 LTGNKLSGHIPPCLV---SLTSLRELHLGSNKLTS----SIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDL 318 (791)
Q Consensus 246 L~~N~i~~~~~~~~~---~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l 318 (791)
+++|.+++..+..+. ..+.++.++|++|.+.+ .+|..+..+++|+.|++++|+++...+..|..+++|+.|++
T Consensus 229 L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEe
Confidence 999999866554333 24455666666655543 12333444444444444444444222222344444444444
Q ss_pred CCcccC
Q 003855 319 SRNQLS 324 (791)
Q Consensus 319 ~~N~l~ 324 (791)
++|++.
T Consensus 309 ~~N~~~ 314 (353)
T 2z80_A 309 HTNPWD 314 (353)
T ss_dssp CSSCBC
T ss_pred eCCCcc
Confidence 444444
No 303
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=5.3e-30 Score=266.78 Aligned_cols=233 Identities=22% Similarity=0.218 Sum_probs=164.9
Q ss_pred CCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCc-cCCCCCccccCCCCCcEEE
Q 003855 191 SGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNK-LSGHIPPCLVSLTSLRELH 269 (791)
Q Consensus 191 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~ 269 (791)
++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|. ++...|..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 466777777777776666667777777777777777776666667777777777777775 6655566677777777777
Q ss_pred cCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCC
Q 003855 270 LGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQG 349 (791)
Q Consensus 270 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 349 (791)
+++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 77777776666667777777777777777776666667777777777777777775555567777777777777777776
Q ss_pred CCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCCCCCCcCCccccccCCccccCCC
Q 003855 350 PIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVKGSFKNFSVESFFGNYALCGPP 423 (791)
Q Consensus 350 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 423 (791)
..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+....+.+++......+...|..|
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEES
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCc
Confidence 66777777777777888777777766667777777788888888777766654444555555555666666544
No 304
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.5e-29 Score=281.52 Aligned_cols=252 Identities=21% Similarity=0.220 Sum_probs=204.2
Q ss_pred CcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcc
Q 003855 144 LTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLR 223 (791)
Q Consensus 144 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 223 (791)
...++.+++.++. +|..+ +..++.|+|++|++++..+..|.++++|+.|+|++|+|+++.+..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~~-iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSS-CCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCc-cCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3455555555553 23322 2455666666666666677778888899999999999988888888889999999999
Q ss_pred cccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCC-CcCCCCCCccccCCCCCCeEEccCCcCccc
Q 003855 224 NNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGS-NKLTSSIPSSLWSLEYILDINLSSNSLNDS 302 (791)
Q Consensus 224 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~ 302 (791)
+|+|++..+..|..+++|+.|+|++|+|+...+..|.++++|+.|++++ |.+....+..|..+++|++|+|++|.+++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9999877777788889999999999998877777888899999999988 556555556788889999999999998754
Q ss_pred CCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhc
Q 003855 303 LPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETL 382 (791)
Q Consensus 303 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 382 (791)
| .+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 3 47888899999999999988888888999999999999999988888888889999999999999987777888889
Q ss_pred ccCceEEccCCCCcccCCC
Q 003855 383 SQLKQFNVSHNRLEGEIPV 401 (791)
Q Consensus 383 ~~L~~l~l~~N~l~~~~~~ 401 (791)
++|+.|+|++|++.|.+..
T Consensus 290 ~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TTCCEEECCSSCEECSTTT
T ss_pred cCCCEEEccCCCcCCCCCc
Confidence 9999999999998887653
No 305
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=6.3e-29 Score=275.44 Aligned_cols=248 Identities=24% Similarity=0.275 Sum_probs=179.0
Q ss_pred CCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCcccccccccccccccccccccc
Q 003855 38 TMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQ 117 (791)
Q Consensus 38 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l 117 (791)
..+.++++++.++ .+|..+. ++++.|+|++|+|+.+.+..|.++++|++|+|++|+|+.+.+..|.++++|+.|++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 5678999999998 8998764 58999999999999888899999999999999999999888888888888888888
Q ss_pred ccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEE
Q 003855 118 VMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLS 197 (791)
Q Consensus 118 ~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 197 (791)
++|+|+.++... |..+++|++|+|++|+++.. .+..|.++++|+.|+
T Consensus 120 ~~n~l~~~~~~~--------~~~l~~L~~L~L~~N~i~~~-------------------------~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 120 FDNRLTTIPNGA--------FVYLSKLKELWLRNNPIESI-------------------------PSYAFNRIPSLRRLD 166 (440)
T ss_dssp CSSCCSSCCTTT--------SCSCSSCCEEECCSCCCCEE-------------------------CTTTTTTCTTCCEEE
T ss_pred CCCcCCeeCHhH--------hhccccCceeeCCCCccccc-------------------------CHHHhhhCcccCEeC
Confidence 888887765433 67777777777777777642 223456677777777
Q ss_pred ccC-CccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCC
Q 003855 198 LHS-NDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLT 276 (791)
Q Consensus 198 L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 276 (791)
|++ |.+..+.+..|.++++|++|+|++|+|+ .+| .+..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+++
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 777 4455455556777777777777777776 333 3566666666666666666655666666666666666666666
Q ss_pred CCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccC
Q 003855 277 SSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLS 324 (791)
Q Consensus 277 ~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~ 324 (791)
+..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 245 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 666666666666666666666666555555666666666666666654
No 306
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.1e-29 Score=279.32 Aligned_cols=252 Identities=23% Similarity=0.259 Sum_probs=205.3
Q ss_pred CcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcc
Q 003855 144 LTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLR 223 (791)
Q Consensus 144 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 223 (791)
.+.++.+++.++. +|..+ +..++.|+|++|++.+..+..|.++++|++|+|++|.|+.+.+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~~-iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLRE-VPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSS-CCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCc-CCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3455555555552 33322 2345556666666666667778888999999999999988888889999999999999
Q ss_pred cccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCC-CcCCCCCCccccCCCCCCeEEccCCcCccc
Q 003855 224 NNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGS-NKLTSSIPSSLWSLEYILDINLSSNSLNDS 302 (791)
Q Consensus 224 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~ 302 (791)
+|+|++..+..|..+++|+.|+|++|+|+...+..|.++++|++|+|++ |.+....+..|.++++|++|+|++|.++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 9999877777888999999999999999877777888999999999998 45555555678889999999999999874
Q ss_pred CCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhc
Q 003855 303 LPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETL 382 (791)
Q Consensus 303 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 382 (791)
+| .+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 44 47888899999999999998888889999999999999999998888889999999999999999998888888889
Q ss_pred ccCceEEccCCCCcccCCC
Q 003855 383 SQLKQFNVSHNRLEGEIPV 401 (791)
Q Consensus 383 ~~L~~l~l~~N~l~~~~~~ 401 (791)
++|+.|+|++|++.|.+..
T Consensus 279 ~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTCCEEECCSSCEECSSTT
T ss_pred cCCCEEEcCCCCccCCCCc
Confidence 9999999999999887653
No 307
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=1.6e-30 Score=274.27 Aligned_cols=250 Identities=20% Similarity=0.219 Sum_probs=210.2
Q ss_pred cCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhccccccc-ccCCcccc-------CCCCCCEEEccCCccccccCc
Q 003855 138 LTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLK-GNIPQEIG-------NLSGLTLLSLHSNDLNGTISP 209 (791)
Q Consensus 138 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~ 209 (791)
++..++|+.|++++|.+ .+|..+... |+.|++++|.+. ..+|..+. ++++|++|+|++|++++..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 44556677777777777 456655443 888888888884 45666555 799999999999999988888
Q ss_pred cc--cCCCCCCEEEcccccCcccCCcccccc-----CCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCC--CC
Q 003855 210 TM--GRLKRLQGLSLRNNNLEGSIPYDLCHL-----KLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSS--IP 280 (791)
Q Consensus 210 ~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~ 280 (791)
.+ ..+++|++|+|++|++++. |..+..+ ++|++|+|++|++++..|..|+++++|++|+|++|++.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 76 8999999999999999976 8888887 9999999999999988889999999999999999998754 23
Q ss_pred ccc--cCCCCCCeEEccCCcCcc---cCCcccccCCCCCEEecCCcccCCCCC-cchhccccccccccccccCCCCCCcc
Q 003855 281 SSL--WSLEYILDINLSSNSLND---SLPSNVQKLKVLTVLDLSRNQLSGDIP-STIGALKDLETLSLARNQFQGPIPES 354 (791)
Q Consensus 281 ~~~--~~l~~L~~L~l~~N~i~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~ 354 (791)
..+ ..+++|++|++++|++++ .....+..+++|+.|++++|++++..| ..+..+++|+.|+|++|+|+ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 334 889999999999999983 222445688999999999999997765 45677899999999999999 77877
Q ss_pred cCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCccc
Q 003855 355 VGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGE 398 (791)
Q Consensus 355 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~ 398 (791)
+. ++|+.|||++|+|++. |. +..+++|+.|++++|++++.
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 76 8999999999999976 65 89999999999999999863
No 308
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.1e-29 Score=262.27 Aligned_cols=255 Identities=20% Similarity=0.205 Sum_probs=128.9
Q ss_pred cEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCcccccccccccccccccccccccc
Q 003855 40 RILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVM 119 (791)
Q Consensus 40 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 119 (791)
++++++++.++ .+|..+ .++|++|+|++|.|+++.+..|.++++|++|+|++|.++++.+..|.++++|+.|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56677777776 666543 34677777777777766666677777777777777777665555554444444444444
Q ss_pred cc-ccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEc
Q 003855 120 NN-LTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSL 198 (791)
Q Consensus 120 n~-l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 198 (791)
|. ++.++. ..|..+++|++|++++|++
T Consensus 90 n~~l~~~~~--------~~~~~l~~L~~L~l~~n~l-------------------------------------------- 117 (285)
T 1ozn_A 90 NAQLRSVDP--------ATFHGLGRLHTLHLDRCGL-------------------------------------------- 117 (285)
T ss_dssp CTTCCCCCT--------TTTTTCTTCCEEECTTSCC--------------------------------------------
T ss_pred CCCccccCH--------HHhcCCcCCCEEECCCCcC--------------------------------------------
Confidence 43 333221 1133444444444444444
Q ss_pred cCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCC
Q 003855 199 HSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSS 278 (791)
Q Consensus 199 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 278 (791)
++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|.++++|++|++++|++++.
T Consensus 118 -----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 118 -----QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp -----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred -----CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 333333333444444444444444433333344444444444444444433333444455555555555555544
Q ss_pred CCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccC
Q 003855 279 IPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVG 356 (791)
Q Consensus 279 ~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 356 (791)
.|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+. ...+..++.+..+.+.+....|..+.
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhC
Confidence 455555555555555555555544444455555555555555555532221 11223344455555555555555443
No 309
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=8.1e-29 Score=275.54 Aligned_cols=248 Identities=23% Similarity=0.282 Sum_probs=172.6
Q ss_pred CCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCcccccccccccccccccccccc
Q 003855 38 TMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQ 117 (791)
Q Consensus 38 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l 117 (791)
+.+.++++++.++ .+|..+. ++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.+..|.++++|+.|++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 4567888888887 8887653 58889999999998888888889999999999999888887788888777777777
Q ss_pred ccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEE
Q 003855 118 VMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLS 197 (791)
Q Consensus 118 ~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 197 (791)
++|+|+.++... |..+++|++|+|++|+++.. .+..|.++++|+.|+
T Consensus 131 ~~n~l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~-------------------------~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 131 FDNWLTVIPSGA--------FEYLSKLRELWLRNNPIESI-------------------------PSYAFNRVPSLMRLD 177 (452)
T ss_dssp CSSCCSBCCTTT--------SSSCTTCCEEECCSCCCCEE-------------------------CTTTTTTCTTCCEEE
T ss_pred CCCcCCccChhh--------hcccCCCCEEECCCCCccee-------------------------CHhHHhcCCcccEEe
Confidence 777777665433 66777777777777776632 223456667777777
Q ss_pred ccC-CccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCC
Q 003855 198 LHS-NDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLT 276 (791)
Q Consensus 198 L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 276 (791)
|++ |.+..+.+..|..+++|++|+|++|+|++ +| .+..+++|+.|+|++|.|++..|..|.++++|+.|+|++|+++
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence 776 45554555566777777777777777763 23 3556666666666666666656666666666666666666666
Q ss_pred CCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccC
Q 003855 277 SSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLS 324 (791)
Q Consensus 277 ~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~ 324 (791)
+..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 256 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred eECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 655666666666666666666666555555566666666666666654
No 310
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=3.1e-30 Score=288.49 Aligned_cols=149 Identities=21% Similarity=0.187 Sum_probs=80.4
Q ss_pred CCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCcccc-CCCCCCeEEccCCcCcccCCcccccCCCCCEEe
Q 003855 239 KLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLW-SLEYILDINLSSNSLNDSLPSNVQKLKVLTVLD 317 (791)
Q Consensus 239 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~ 317 (791)
++|+.|+|++|.+++..|..++++++|+.|+|++|.+++..|..+. .+++|+.|+|++|.|++.. .+..+++|+.|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~ 197 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLD 197 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEE
Confidence 3444444444444444444444444555555555555444444443 3455555555555554331 122355666666
Q ss_pred cCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccC-CCCchhhhhcccCceEEcc
Q 003855 318 LSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLS-GKIPKSLETLSQLKQFNVS 391 (791)
Q Consensus 318 l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~l~l~ 391 (791)
|++|.+++ +|..+..+++|+.|+|++|.|++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 198 Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 66666663 33336666666666666666663 5555666666677777776666 4555666666666665554
No 311
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=3.2e-28 Score=277.35 Aligned_cols=268 Identities=28% Similarity=0.351 Sum_probs=148.8
Q ss_pred CCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEec
Q 003855 14 NLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDL 93 (791)
Q Consensus 14 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 93 (791)
++++|++++|+|+ .+|..+. ++|++|+|++|.|+ .+|. .+++|++|+|++|+|++ +|. .+++|++|+|
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 4556666666665 3344443 45666666666665 5554 14555555555555553 222 3455555555
Q ss_pred cCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhh
Q 003855 94 GFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFY 173 (791)
Q Consensus 94 ~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 173 (791)
++|+++++.. .+++|+.|++++|++++.
T Consensus 109 s~N~l~~l~~------------------------------------~l~~L~~L~L~~N~l~~l---------------- 136 (622)
T 3g06_A 109 FSNPLTHLPA------------------------------------LPSGLCKLWIFGNQLTSL---------------- 136 (622)
T ss_dssp CSCCCCCCCC------------------------------------CCTTCCEEECCSSCCSCC----------------
T ss_pred cCCcCCCCCC------------------------------------CCCCcCEEECCCCCCCcC----------------
Confidence 5555543221 234455555555555421
Q ss_pred cccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCC
Q 003855 174 AYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSG 253 (791)
Q Consensus 174 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 253 (791)
|. .+++|++|+|++|+++++ |. .+++|+.|++++|.|++ +| ..+++|+.|++++|.|++
T Consensus 137 ----------p~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 137 ----------PV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp ----------CC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC
T ss_pred ----------CC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC
Confidence 11 124555555555555532 21 23455556666665553 33 234555556666665553
Q ss_pred CCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhc
Q 003855 254 HIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGA 333 (791)
Q Consensus 254 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 333 (791)
+|. .+++|+.|++++|.++. +|. .+++|+.|++++|.|++ +| ..+++|+.|+|++|+|+ .+|. .
T Consensus 196 -l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~ 259 (622)
T 3g06_A 196 -LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---L 259 (622)
T ss_dssp -CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---C
T ss_pred -CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---c
Confidence 232 13566666666666663 332 23566666666666664 33 34466777777777776 3444 4
Q ss_pred cccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcc
Q 003855 334 LKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLS 383 (791)
Q Consensus 334 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 383 (791)
+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++..|..+..++
T Consensus 260 ~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 260 PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 566777777777777 5666677777777777777777776666666655
No 312
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=8.3e-29 Score=262.52 Aligned_cols=227 Identities=22% Similarity=0.307 Sum_probs=179.1
Q ss_pred CCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEE
Q 003855 141 CRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGL 220 (791)
Q Consensus 141 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 220 (791)
.++++.|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..|+.+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~--------------------------~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L 132 (328)
T 4fcg_A 80 QPGRVALELRSVPLP--------------------------QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETL 132 (328)
T ss_dssp STTCCEEEEESSCCS--------------------------SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEE
T ss_pred ccceeEEEccCCCch--------------------------hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEE
Confidence 356777777777776 23444555677777777777777 566677777777777
Q ss_pred EcccccCcccCCccccccCCCceEEecCCccCCCCCcccc---------CCCCCcEEEcCCCcCCCCCCccccCCCCCCe
Q 003855 221 SLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLV---------SLTSLRELHLGSNKLTSSIPSSLWSLEYILD 291 (791)
Q Consensus 221 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~---------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 291 (791)
+|++|.++ .+|..+..+++|+.|+|++|.+.+.+|..+. ++++|++|+|++|+++ .+|..+..+++|++
T Consensus 133 ~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210 (328)
T ss_dssp EEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE
T ss_pred ECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE
Confidence 77777777 5677777777777777777766666666554 4888888888888888 67778888888888
Q ss_pred EEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCcc
Q 003855 292 INLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNL 371 (791)
Q Consensus 292 L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 371 (791)
|+|++|.+++ +|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++.+.+|..+..+++|+.|+|++|++
T Consensus 211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 8888888874 566788888899999999888888888888889999999999888888888888889999999999888
Q ss_pred CCCCchhhhhcccCceEEccCCCCcc
Q 003855 372 SGKIPKSLETLSQLKQFNVSHNRLEG 397 (791)
Q Consensus 372 ~~~~~~~~~~l~~L~~l~l~~N~l~~ 397 (791)
.+.+|..+..+++|+.+++..|.+..
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred hhhccHHHhhccCceEEeCCHHHHHH
Confidence 88899999999999998888776543
No 313
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=3e-30 Score=272.73 Aligned_cols=266 Identities=20% Similarity=0.175 Sum_probs=168.6
Q ss_pred CcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCccccccccccccccccccccccc
Q 003855 39 MRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQV 118 (791)
Q Consensus 39 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~ 118 (791)
++.++++++.+. ..+..++..+++|++|+|++|.|+++.|..|.++++|++|+|++|++++..+ |..+++|+.|+++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 344555566554 4444444445566666666666665555566666666666666666654433 5555556666655
Q ss_pred cccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEc
Q 003855 119 MNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSL 198 (791)
Q Consensus 119 ~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 198 (791)
+|+++.++ ..++|++|++++|++++..+ ..+++|+.|++
T Consensus 89 ~n~l~~l~-------------~~~~L~~L~l~~n~l~~~~~----------------------------~~~~~L~~L~l 127 (317)
T 3o53_A 89 NNYVQELL-------------VGPSIETLHAANNNISRVSC----------------------------SRGQGKKNIYL 127 (317)
T ss_dssp SSEEEEEE-------------ECTTCCEEECCSSCCSEEEE----------------------------CCCSSCEEEEC
T ss_pred CCcccccc-------------CCCCcCEEECCCCccCCcCc----------------------------cccCCCCEEEC
Confidence 55555422 23567777777777664311 12456777777
Q ss_pred cCCccccccCccccCCCCCCEEEcccccCcccCCcccc-ccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCC
Q 003855 199 HSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLC-HLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTS 277 (791)
Q Consensus 199 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 277 (791)
++|++++..+..|..+++|++|+|++|.+++..+..+. .+++|+.|+|++|.|++. + ....+++|++|+|++|++++
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE
T ss_pred CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc
Confidence 77777766666777777777777777777765555553 567777777777777643 2 23347777777777777774
Q ss_pred CCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccC-CCCCcchhcccccccccccc-ccCCCCCC
Q 003855 278 SIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLS-GDIPSTIGALKDLETLSLAR-NQFQGPIP 352 (791)
Q Consensus 278 ~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~L~~-N~l~~~~~ 352 (791)
. |..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +..|..+..+++|+.|++++ +.+++..|
T Consensus 206 l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 206 M-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp E-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred c-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 3 344777777777777777776 35666777777777777777777 55666777777777777773 34554443
No 314
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=3.8e-28 Score=276.71 Aligned_cols=253 Identities=29% Similarity=0.333 Sum_probs=150.9
Q ss_pred cCCccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCc
Q 003855 4 QIPTEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSIT 83 (791)
Q Consensus 4 ~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 83 (791)
+||..+. ++|++|+|++|+|+.+ |. .+++|++|+|++|+|+ .+|. .+++|++|+|++|.|+++ |.
T Consensus 54 ~lp~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-~~--- 118 (622)
T 3g06_A 54 TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHL-PA--- 118 (622)
T ss_dssp CCCSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCC-CC---
T ss_pred ccChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCC-CC---
Confidence 6777776 8999999999999854 54 5789999999999998 8887 378999999999999964 44
Q ss_pred CCCCCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhh
Q 003855 84 NATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIG 163 (791)
Q Consensus 84 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 163 (791)
.+++|+.|+|++|+++.++. .+++|+.|++++|+++.++. .+++|+.|++++|.+++
T Consensus 119 ~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~------------~~~~L~~L~L~~N~l~~------- 175 (622)
T 3g06_A 119 LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA------------LPSELCKLWAYNNQLTS------- 175 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSSCCSC-------
T ss_pred CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCC------------ccCCCCEEECCCCCCCC-------
Confidence 56889999999999886433 13555555555555544321 12344444555444442
Q ss_pred hhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCce
Q 003855 164 NFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFG 243 (791)
Q Consensus 164 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 243 (791)
+| ..+++|+.|+|++|.|+++ |. .+++|+.|++++|.|+ .+|..
T Consensus 176 -------------------l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~~~--------- 219 (622)
T 3g06_A 176 -------------------LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT-SLPAL--------- 219 (622)
T ss_dssp -------------------CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-SCCCC---------
T ss_pred -------------------Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccc-ccCCC---------
Confidence 11 1234555555555555532 21 1245555555555555 22221
Q ss_pred EEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCccc
Q 003855 244 IRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQL 323 (791)
Q Consensus 244 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l 323 (791)
+++|+.|+|++|+|++ +| ..+++|+.|+|++|.|+. +|. .+++|+.|+|++|+|
T Consensus 220 ------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L 273 (622)
T 3g06_A 220 ------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQL 273 (622)
T ss_dssp ------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred ------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCC
Confidence 2444555555555443 22 233445555555555542 222 344555555555555
Q ss_pred CCCCCcchhccccccccccccccCCCCCCcccCC
Q 003855 324 SGDIPSTIGALKDLETLSLARNQFQGPIPESVGS 357 (791)
Q Consensus 324 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 357 (791)
+ .+|..+..+++|+.|+|++|++++..|..+..
T Consensus 274 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 274 T-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp C-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred C-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 5 44555555555555555555555544444443
No 315
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.5e-28 Score=260.60 Aligned_cols=134 Identities=19% Similarity=0.288 Sum_probs=62.8
Q ss_pred ccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCc
Q 003855 187 IGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLR 266 (791)
Q Consensus 187 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 266 (791)
|.++++|++|+|++|+++ .+|..+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|.+.+.+|..++++++|+
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 444555555555555555 34444555555555555555555 2333444444444444444444444444444444444
Q ss_pred EEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcc
Q 003855 267 ELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQ 322 (791)
Q Consensus 267 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~ 322 (791)
+|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.+++..|.
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 44444444444444444444444444444444444444444444444444444333
No 316
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=9.6e-30 Score=268.88 Aligned_cols=267 Identities=20% Similarity=0.177 Sum_probs=164.2
Q ss_pred ccEEEccCCcceecCCccCcCCCCCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCC
Q 003855 64 IESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRN 143 (791)
Q Consensus 64 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~ 143 (791)
++.++++.+.+.......+..+++|++|+|++|+++++.+..|.++++|+.|++++|+++... .+..+
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------~~~~l-- 79 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL----------DLESL-- 79 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE----------EETTC--
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch----------hhhhc--
Confidence 444555556555444444555556666666666666555555555555555555555444321 13444
Q ss_pred CcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcc
Q 003855 144 LTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLR 223 (791)
Q Consensus 144 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 223 (791)
++|++|+|++|++++.. ..++|++|+++
T Consensus 80 -----------------------------------------------~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~ 107 (317)
T 3o53_A 80 -----------------------------------------------STLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (317)
T ss_dssp -----------------------------------------------TTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred -----------------------------------------------CCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence 44444444444444222 12445555555
Q ss_pred cccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCcccc-CCCCCCeEEccCCcCccc
Q 003855 224 NNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLW-SLEYILDINLSSNSLNDS 302 (791)
Q Consensus 224 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~i~~~ 302 (791)
+|+|++..+.. +++|+.|++++|++++..+..+..+++|++|+|++|++++..+..+. .+++|++|++++|.+++.
T Consensus 108 ~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 108 NNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp SSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 55554332222 34455555555555544445555556666666666666555444443 456666666666666544
Q ss_pred CCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccC-CCCchhhhh
Q 003855 303 LPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLS-GKIPKSLET 381 (791)
Q Consensus 303 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~ 381 (791)
+ ....+++|+.|+|++|++++ +|..+..+++|+.|+|++|+|+ .+|..+..+++|+.|++++|+++ +.+|..+..
T Consensus 185 -~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 185 -K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp -E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred -c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 2 22347788888888888884 5555888888999999999888 57778888999999999999998 778888999
Q ss_pred cccCceEEccC-CCCcccCCC
Q 003855 382 LSQLKQFNVSH-NRLEGEIPV 401 (791)
Q Consensus 382 l~~L~~l~l~~-N~l~~~~~~ 401 (791)
+++|+.+++++ +.++|..|.
T Consensus 261 ~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 261 NQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CHHHHHHHHHHHHHHHSSSSC
T ss_pred cccceEEECCCchhccCCchh
Confidence 99999999984 456655543
No 317
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.4e-29 Score=267.03 Aligned_cols=252 Identities=22% Similarity=0.258 Sum_probs=131.8
Q ss_pred CCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCc-ccCCchhh-------hcCCCccEEEccCCcceecCCccC
Q 003855 11 NLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLS-GRLPSTVG-------HLLPNIESLLLAANNLTGIIPHSI 82 (791)
Q Consensus 11 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~ 82 (791)
..++|++|++++|++ .+|..+... |+.|+|++|+++ ..+|..++ . +++|++|+|++|.+++..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLG-ISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHT-TSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcC-cCCccEEEccCCcccchhHHHH
Confidence 344455555555555 334444332 555555555552 23444332 2 4455555555555554444443
Q ss_pred --cCCCCCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCCh
Q 003855 83 --TNATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPP 160 (791)
Q Consensus 83 --~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 160 (791)
..+++|++|+|++|++++. +..|.++. ...+++|++|+|++|++++.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~---------------------------~~~~~~L~~L~L~~N~l~~~--- 164 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQ---------------------------QWLKPGLKVLSIAQAHSLNF--- 164 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHH---------------------------TTCCTTCCEEEEESCSCCCC---
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHH---------------------------HhhcCCCcEEEeeCCCCccc---
Confidence 4555555555555555544 34444430 00115555555555555432
Q ss_pred hhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccc--cCccc--cCCCCCCEEEcccccCcc---cCCc
Q 003855 161 VIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGT--ISPTM--GRLKRLQGLSLRNNNLEG---SIPY 233 (791)
Q Consensus 161 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~---~~~~ 233 (791)
.|..|.++++|++|+|++|++.+. .+..+ ..+++|++|+|++|+|++ ....
T Consensus 165 ----------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 165 ----------------------SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp ----------------------CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred ----------------------hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 223344555555555555554432 11222 555566666666665552 1112
Q ss_pred cccccCCCceEEecCCccCCCCC-ccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCC
Q 003855 234 DLCHLKLMFGIRLTGNKLSGHIP-PCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKV 312 (791)
Q Consensus 234 ~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~ 312 (791)
.+..+++|+.|+|++|++++..| ..+..+++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++. |. +..+++
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~ 297 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ 297 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence 33455566666666666665443 34455667777777777776 4455444 6677777777777654 44 677777
Q ss_pred CCEEecCCcccCC
Q 003855 313 LTVLDLSRNQLSG 325 (791)
Q Consensus 313 L~~L~l~~N~l~~ 325 (791)
|+.|++++|++++
T Consensus 298 L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 298 VGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEECTTCTTTC
T ss_pred CCEEeccCCCCCC
Confidence 7777777777763
No 318
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.8e-31 Score=306.78 Aligned_cols=404 Identities=13% Similarity=0.075 Sum_probs=217.0
Q ss_pred CccccCCCCCCeeecCCCcc---cccCCcccc------------CCCCCcEEeCCCCcCcccCCchhhhcCCC-ccEEEc
Q 003855 6 PTEIGNLQNLQYLVFAENNL---SGLVPPTIF------------NISTMRILTLEGNQLSGRLPSTVGHLLPN-IESLLL 69 (791)
Q Consensus 6 p~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~------------~l~~L~~L~L~~n~l~~~~p~~~~~~l~~-L~~L~L 69 (791)
+..+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+...+++ |++|+|
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 34456788888888887533 133443333 67888889998888876666666553444 888888
Q ss_pred cCCc-cee-cCCccCcCCCCCCEEeccCcccccc----ccccccccccccccccccccccccCCCccccccccccCCCCC
Q 003855 70 AANN-LTG-IIPHSITNATKLVALDLGFNSFAGH----ILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRN 143 (791)
Q Consensus 70 ~~N~-l~~-~~~~~~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~ 143 (791)
++|. ++. .++....++++|++|+|++|.+++. ....+.++++|+.|++++|.++.+... .+...+.++++
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~----~l~~~~~~~~~ 221 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPK----DLETIARNCRS 221 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHH----HHHHHHHHCTT
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHH----HHHHHHhhCCC
Confidence 8886 221 1222334778888888888887655 233456778888888888888643321 12333567788
Q ss_pred CcEEEccCCCCcccCChhhhhhhhhhhhhhccccccc---ccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEE
Q 003855 144 LTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLK---GNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGL 220 (791)
Q Consensus 144 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 220 (791)
|+.|++++|.+.+ ++..+... ++|++|.+..+... ...+..+..+++|+.|+++++... ..+..+..+++|++|
T Consensus 222 L~~L~L~~~~~~~-l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 222 LVSVKVGDFEILE-LVGFFKAA-ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKL 298 (592)
T ss_dssp CCEEECSSCBGGG-GHHHHHHC-TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEE
T ss_pred CcEEeccCccHHH-HHHHHhhh-hHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEE
Confidence 8888888888875 44444444 56777777643322 223334555566666666654333 344455555666666
Q ss_pred EcccccCcccCC-ccccccCCCceEEecCCccC-CCCCccccCCCCCcEEEcCC-----------CcCCCCCC-ccccCC
Q 003855 221 SLRNNNLEGSIP-YDLCHLKLMFGIRLTGNKLS-GHIPPCLVSLTSLRELHLGS-----------NKLTSSIP-SSLWSL 286 (791)
Q Consensus 221 ~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~-----------N~l~~~~~-~~~~~l 286 (791)
+|++|.+++... ..+..+++|+.|+++ +.+. ..++..+..+++|++|++++ |.++.... ..+..+
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 666666543222 224455556666655 2222 12222234455555555552 34432211 112234
Q ss_pred CCCCeEEccCCcCcccCCccccc-CCCCCEEecC----CcccCCC-----CCcchhcccccccccccccc--CCCCCCcc
Q 003855 287 EYILDINLSSNSLNDSLPSNVQK-LKVLTVLDLS----RNQLSGD-----IPSTIGALKDLETLSLARNQ--FQGPIPES 354 (791)
Q Consensus 287 ~~L~~L~l~~N~i~~~~~~~~~~-l~~L~~L~l~----~N~l~~~-----~~~~~~~l~~L~~L~L~~N~--l~~~~~~~ 354 (791)
++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|+.|++++|. +++..+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 55555555555555444444433 5555555553 4444432 11223445555555554322 33322222
Q ss_pred cC-CCCCCcEEEccCCccCC-CCchhhhhcccCceEEccCCCCcccC-CC-CCCCcCCccccccCCc
Q 003855 355 VG-SLISLESLDLSGNNLSG-KIPKSLETLSQLKQFNVSHNRLEGEI-PV-KGSFKNFSVESFFGNY 417 (791)
Q Consensus 355 ~~-~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~l~l~~N~l~~~~-~~-~~~~~~l~~~~~~~n~ 417 (791)
++ .+++|+.|+|++|++++ .++..+..+++|+.|++++|++++.. +. ...+++++.+.+.+|.
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 22 24455555555555543 22333344555555555555544321 11 1223444555555544
No 319
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=8.3e-31 Score=302.78 Aligned_cols=375 Identities=17% Similarity=0.097 Sum_probs=284.5
Q ss_pred CCCCCCeeecCCCcccccCCccccCC--CCCcEEeCCCCc-Ccc-cCCchhhhcCCCccEEEccCCcceec----CCccC
Q 003855 11 NLQNLQYLVFAENNLSGLVPPTIFNI--STMRILTLEGNQ-LSG-RLPSTVGHLLPNIESLLLAANNLTGI----IPHSI 82 (791)
Q Consensus 11 ~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~-l~~-~~p~~~~~~l~~L~~L~L~~N~l~~~----~~~~~ 82 (791)
.+++|++|+|++|.+++..+..+..+ .+|++|+|++|. ++. .++ .+...+++|++|+|++|.+++. ++..+
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLL-SIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHH-HHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHH-HHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 78999999999999987777777664 459999999987 321 122 2233479999999999998865 33355
Q ss_pred cCCCCCCEEeccCcccccc----ccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCc---
Q 003855 83 TNATKLVALDLGFNSFAGH----ILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLG--- 155 (791)
Q Consensus 83 ~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~--- 155 (791)
..+++|++|+|++|.+++. .+..+.++++|+.|++++|.+..++ ..+..+++|+.|+++.+...
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~---------~~~~~~~~L~~L~l~~~~~~~~~ 259 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV---------GFFKAAANLEEFCGGSLNEDIGM 259 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH---------HHHHHCTTCCEEEECBCCCCTTC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH---------HHHhhhhHHHhhcccccccccch
Confidence 7789999999999999733 3445678899999999999887643 34788899999999864332
Q ss_pred ccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccC-ccccCCCCCCEEEcccccCc-ccCCc
Q 003855 156 GILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTIS-PTMGRLKRLQGLSLRNNNLE-GSIPY 233 (791)
Q Consensus 156 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~-~~~~~ 233 (791)
...+..+... .+|+.|.+.++.. ..+|..+..+++|++|+|++|.+++... ..+..+++|++|+++ |.+. ..++.
T Consensus 260 ~~~~~~l~~~-~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~ 336 (592)
T 3ogk_B 260 PEKYMNLVFP-RKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEV 336 (592)
T ss_dssp TTSSSCCCCC-TTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHH
T ss_pred HHHHHHhhcc-ccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHH
Confidence 1112222222 4688888887543 3667788889999999999999875443 346889999999999 4444 33444
Q ss_pred cccccCCCceEEecC-----------CccCCCC-CccccCCCCCcEEEcCCCcCCCCCCccccC-CCCCCeEEcc----C
Q 003855 234 DLCHLKLMFGIRLTG-----------NKLSGHI-PPCLVSLTSLRELHLGSNKLTSSIPSSLWS-LEYILDINLS----S 296 (791)
Q Consensus 234 ~~~~l~~L~~L~L~~-----------N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~----~ 296 (791)
.+..+++|+.|+|++ |.+++.. +..+..+++|++|+++.|.+++..+..+.. +++|+.|+++ .
T Consensus 337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE 416 (592)
T ss_dssp HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence 557789999999993 5666432 233456899999999999998766666665 8899999996 7
Q ss_pred CcCccc-----CCcccccCCCCCEEecCCcc--cCCCCCcchhc-cccccccccccccCCC-CCCcccCCCCCCcEEEcc
Q 003855 297 NSLNDS-----LPSNVQKLKVLTVLDLSRNQ--LSGDIPSTIGA-LKDLETLSLARNQFQG-PIPESVGSLISLESLDLS 367 (791)
Q Consensus 297 N~i~~~-----~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~-l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~ 367 (791)
|.+++. ++..+.++++|+.|++++|. +++..+..+.. +++|+.|++++|++++ .++..+..+++|+.|+|+
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence 788763 33447789999999998544 66555555544 8999999999999985 345556788999999999
Q ss_pred CCccCCC-CchhhhhcccCceEEccCCCCccc
Q 003855 368 GNNLSGK-IPKSLETLSQLKQFNVSHNRLEGE 398 (791)
Q Consensus 368 ~N~l~~~-~~~~~~~l~~L~~l~l~~N~l~~~ 398 (791)
+|++++. ++..+..+++|+.|++++|+++..
T Consensus 497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp SCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 9998755 445567899999999999998765
No 320
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.95 E-value=1.3e-28 Score=278.88 Aligned_cols=185 Identities=19% Similarity=0.092 Sum_probs=131.4
Q ss_pred ccCCCcceEEEEEE-ecCCcEEEEEEeehh----------hhHHHHHHHHHHHHHHhc-cCCccceeeeeeccCCeeeEE
Q 003855 508 LLGTGSFGSVYKGT-ISDGTDVAIKIFNLQ----------LERAFRSFDSECEVLRNV-RHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 508 ~ig~G~~g~Vy~~~-~~~~~~vavK~~~~~----------~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv 575 (791)
..+.|++|.+..++ .-.|+.||||++... .+...++|.+|+++|+++ .|+||+++++++++....|||
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV 320 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV 320 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence 45677777666654 336899999998653 133456799999999999 799999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||++||+|.++|...+. ++.. +|+.||+.||+|+| +.+||||||||+|||++++|.+||+|||+|+.....
T Consensus 321 MEyv~G~~L~d~i~~~~~-l~~~---~I~~QIl~AL~ylH----~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~ 392 (569)
T 4azs_A 321 MEKLPGRLLSDMLAAGEE-IDRE---KILGSLLRSLAALE----KQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD 392 (569)
T ss_dssp EECCCSEEHHHHHHTTCC-CCHH---HHHHHHHHHHHHHH----HTTCEESCCCGGGEEECTTSCEEECCCTTEESCC--
T ss_pred EecCCCCcHHHHHHhCCC-CCHH---HHHHHHHHHHHHHH----HCCceeccCchHhEEECCCCCEEEeecccCeeCCCC
Confidence 999999999999987654 5543 58899999999999 789999999999999999999999999999876543
Q ss_pred CCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCC
Q 003855 656 EDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 703 (791)
Q Consensus 656 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p 703 (791)
.. .....+||++|||||.+.+ .+..++|+||+|++++++.++..|
T Consensus 393 ~~--~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 393 CS--WPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp -C--CSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred Cc--cccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence 22 2334679999999998865 467789999999998887766543
No 321
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=8e-27 Score=241.51 Aligned_cols=211 Identities=22% Similarity=0.217 Sum_probs=183.2
Q ss_pred CCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEc
Q 003855 191 SGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHL 270 (791)
Q Consensus 191 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 270 (791)
++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|.+++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 47889999999998777778888999999999999998777778888999999999999998777788899999999999
Q ss_pred CCCcCCCCCCccccCCCCCCeEEccCCcCccc-CCcccccCCCCCEEecCCcccCCCCCcchhcccccc----ccccccc
Q 003855 271 GSNKLTSSIPSSLWSLEYILDINLSSNSLNDS-LPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLE----TLSLARN 345 (791)
Q Consensus 271 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~----~L~L~~N 345 (791)
++|++.+..+..+..+++|++|++++|.+++. +|..+..+++|+.|++++|++++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999877777888999999999999999864 588899999999999999999977777888888887 8899999
Q ss_pred cCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCCC
Q 003855 346 QFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVK 402 (791)
Q Consensus 346 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~ 402 (791)
++++..+..+. ..+|+.|+|++|++++..+..|..+++|+.|++++|+++|.++..
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 99965555554 458999999999999887778899999999999999999988754
No 322
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.2e-27 Score=267.55 Aligned_cols=234 Identities=21% Similarity=0.185 Sum_probs=146.0
Q ss_pred CccEEEccCCcceecCCccCcCCCCCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCC
Q 003855 63 NIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCR 142 (791)
Q Consensus 63 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~ 142 (791)
+|++|+|++|.|++..|..|..+++|++|+|++|.+++..+ |.++++|+.|++++|.|+.++ ..+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-------------~~~ 99 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-------------VGP 99 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-------------ECT
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-------------CCC
Confidence 56666666666666666666666666666666666665443 555555555555555555432 125
Q ss_pred CCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEc
Q 003855 143 NLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSL 222 (791)
Q Consensus 143 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 222 (791)
+|+.|++++|.+++..+ ..+++|+.|+|++|.+++..|..|+.+++|++|+|
T Consensus 100 ~L~~L~L~~N~l~~~~~----------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 100 SIETLHAANNNISRVSC----------------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp TCCEEECCSSCCCCEEE----------------------------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred CcCEEECcCCcCCCCCc----------------------------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC
Confidence 66666666666664311 12356667777777776666666666777777777
Q ss_pred ccccCcccCCcccc-ccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcc
Q 003855 223 RNNNLEGSIPYDLC-HLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLND 301 (791)
Q Consensus 223 ~~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~ 301 (791)
++|.|++..|..+. .+++|+.|+|++|.|++. + .+..+++|+.|+|++|+|++..| .+..+++|+.|+|++|.+++
T Consensus 152 s~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE
T ss_pred CCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc
Confidence 77777665665554 566666677776666644 2 23346677777777777765333 36666777777777777764
Q ss_pred cCCcccccCCCCCEEecCCcccC-CCCCcchhccccccccccc
Q 003855 302 SLPSNVQKLKVLTVLDLSRNQLS-GDIPSTIGALKDLETLSLA 343 (791)
Q Consensus 302 ~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~L~ 343 (791)
+|..+..+++|+.|++++|.+. +.+|..+..++.|+.|+++
T Consensus 229 -lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 229 -IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 4555666677777777777766 4455556666666666665
No 323
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.5e-25 Score=230.97 Aligned_cols=206 Identities=22% Similarity=0.254 Sum_probs=172.2
Q ss_pred CCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcC
Q 003855 192 GLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLG 271 (791)
Q Consensus 192 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 271 (791)
+.+.+++++|+++. +|..+. ++|++|+|++|+|++..+..|..+++|+.|+|++|.++...+..|.++++|++|+|+
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 56788888888884 454443 578888888888887777788888888888888888886666677888888999998
Q ss_pred CCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCC
Q 003855 272 SNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPI 351 (791)
Q Consensus 272 ~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 351 (791)
+|++.+..+..|..+++|++|++++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88888777777888888999999999888877778888899999999999998766667888999999999999998776
Q ss_pred CcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCC
Q 003855 352 PESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIP 400 (791)
Q Consensus 352 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~ 400 (791)
+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+.++
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 7778889999999999999987777778889999999999999888765
No 324
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=7.9e-26 Score=234.01 Aligned_cols=207 Identities=20% Similarity=0.191 Sum_probs=176.7
Q ss_pred hhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecC
Q 003855 169 LQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTG 248 (791)
Q Consensus 169 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 248 (791)
|++|++++|++++..+..|.++++|++|+|++|+++++.+..|..+++|++|+|++|++++..+..|..+++|+.|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 33344444444444455688899999999999999988888899999999999999999988888999999999999999
Q ss_pred CccCCCCCccccCCCCCcEEEcCCCcCCCC-CCccccCCCCCCeEEccCCcCcccCCcccccCCCCC----EEecCCccc
Q 003855 249 NKLSGHIPPCLVSLTSLRELHLGSNKLTSS-IPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLT----VLDLSRNQL 323 (791)
Q Consensus 249 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~----~L~l~~N~l 323 (791)
|.+++..+..+.++++|++|++++|++++. +|..+..+++|++|++++|++++..+..+..+++|+ .|++++|.+
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l 189 (276)
T 2z62_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (276)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCC
T ss_pred CCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcc
Confidence 999987777899999999999999999874 588999999999999999999988888888887777 899999999
Q ss_pred CCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCc
Q 003855 324 SGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIP 376 (791)
Q Consensus 324 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 376 (791)
++..+..+. ..+|+.|++++|++++..+..+..+++|+.|+|++|++++..|
T Consensus 190 ~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 190 NFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 965555444 4589999999999997777778999999999999999997554
No 325
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=3.5e-25 Score=230.07 Aligned_cols=207 Identities=23% Similarity=0.189 Sum_probs=175.5
Q ss_pred ccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCc
Q 003855 187 IGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLR 266 (791)
Q Consensus 187 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 266 (791)
+.++++++.+++++|+++. +|..+. +++++|+|++|.|++..+..|..+++|+.|+|++|.|++..+ .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 6678889999999999984 444443 688999999999988888889999999999999999985433 37888999
Q ss_pred EEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhcccccccccccccc
Q 003855 267 ELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQ 346 (791)
Q Consensus 267 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 346 (791)
+|+|++|+++ .+|..+..+++|++|++++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 9999999998 567788889999999999999988777889999999999999999997777778889999999999999
Q ss_pred CCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCC
Q 003855 347 FQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIP 400 (791)
Q Consensus 347 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~ 400 (791)
|++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.+++++|++.|.+.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 99666667788999999999999998 677777788899999999999887653
No 326
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1e-24 Score=224.67 Aligned_cols=205 Identities=29% Similarity=0.285 Sum_probs=172.6
Q ss_pred CCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEc
Q 003855 143 NLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSL 222 (791)
Q Consensus 143 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 222 (791)
+++.+++++|+++.+ | ..+. ++|+.|+|++|+++++.+..|..+++|++|+|
T Consensus 17 ~~~~l~~~~~~l~~i-p-------------------------~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 68 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-P-------------------------SNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYL 68 (270)
T ss_dssp TTTEEECTTSCCSSC-C-------------------------SCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCcc-C-------------------------CCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEEC
Confidence 567888888888742 2 2222 46888888888888777778888888888888
Q ss_pred ccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCccc
Q 003855 223 RNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDS 302 (791)
Q Consensus 223 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~ 302 (791)
++|.|+...+..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+++.
T Consensus 69 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 88888866666778888888999998888877777788899999999999999888888888999999999999999877
Q ss_pred CCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCC
Q 003855 303 LPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKI 375 (791)
Q Consensus 303 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 375 (791)
.+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++...-
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 7777889999999999999999777777899999999999999999777777899999999999999997543
No 327
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.4e-25 Score=231.45 Aligned_cols=185 Identities=24% Similarity=0.230 Sum_probs=89.2
Q ss_pred CCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEE
Q 003855 190 LSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELH 269 (791)
Q Consensus 190 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 269 (791)
+++|++|+|++|.+++. +.+..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++..+..|.++++|++|+
T Consensus 62 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp CTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 34444444444444421 2344444444444444444433333444444444444444444444444444444555555
Q ss_pred cCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCC
Q 003855 270 LGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQG 349 (791)
Q Consensus 270 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 349 (791)
+++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 55555444444444445555555555555544444444555555555555555554444445555555555555555442
Q ss_pred CCCcccCCCCCCcEEEccCCccCCCCchhhhhcc
Q 003855 350 PIPESVGSLISLESLDLSGNNLSGKIPKSLETLS 383 (791)
Q Consensus 350 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 383 (791)
. +++|+.|+++.|.++|.+|..++.++
T Consensus 220 ~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 220 T-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp C-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred c-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 2 33455555666666666665555443
No 328
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.4e-25 Score=229.55 Aligned_cols=222 Identities=24% Similarity=0.227 Sum_probs=197.5
Q ss_pred hhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEec
Q 003855 168 SLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLT 247 (791)
Q Consensus 168 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 247 (791)
.+..+.+..+.+.... .+..+++|+.|++++|.++.. ..+..+++|++|+|++|.+++. ..+..+++|+.|+|+
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 4667778887776543 356789999999999999843 4688999999999999999853 478999999999999
Q ss_pred CCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCC
Q 003855 248 GNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDI 327 (791)
Q Consensus 248 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 327 (791)
+|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 99999888888999999999999999999888888999999999999999999888888899999999999999999887
Q ss_pred CcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCCC
Q 003855 328 PSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVK 402 (791)
Q Consensus 328 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~ 402 (791)
+..|..+++|+.|++++|++++..+..+..+++|+.|+|++|++.+. +++|+.++++.|.++|.+|..
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 77889999999999999999988888899999999999999999865 457889999999999998864
No 329
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=6.5e-25 Score=228.10 Aligned_cols=207 Identities=27% Similarity=0.260 Sum_probs=186.9
Q ss_pred cccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCC
Q 003855 210 TMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYI 289 (791)
Q Consensus 210 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 289 (791)
.+..+++++++++++|.++ .+|..+. ++++.|+|++|.|++..+..|.++++|++|+|++|+|++..+. ..+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 4678899999999999999 5665554 6899999999999988889999999999999999999865443 789999
Q ss_pred CeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCC
Q 003855 290 LDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGN 369 (791)
Q Consensus 290 ~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 369 (791)
++|++++|.++ .+|..+..+++|+.|++++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999998 67888999999999999999999877788999999999999999999877888899999999999999
Q ss_pred ccCCCCchhhhhcccCceEEccCCCCcccCCCCCCCcCCccccccCCccccCC
Q 003855 370 NLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVKGSFKNFSVESFFGNYALCGP 422 (791)
Q Consensus 370 ~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~ 422 (791)
+|++..+..|..+++|+.|+|++|+++..++.......++.+.+.+|+|.|+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcC
Confidence 99977778889999999999999999987777667778899999999999974
No 330
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=7.7e-28 Score=278.07 Aligned_cols=399 Identities=14% Similarity=0.111 Sum_probs=206.4
Q ss_pred ccCCCCCCeeecCCCcccc---cCCc------------cccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCC-
Q 003855 9 IGNLQNLQYLVFAENNLSG---LVPP------------TIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAAN- 72 (791)
Q Consensus 9 ~~~l~~L~~L~Ls~n~l~~---~~~~------------~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N- 72 (791)
+..+++|++|+|++|.... ..|. .+..+++|++|+|++|.+++..+..+...+++|++|+|++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 4567889999998875321 1221 12457889999999998886666666544789999999988
Q ss_pred cceec-CCccCcCCCCCCEEeccCcccccccccccc----ccccccccccccccccccCCCccccccccccCCCCCCcEE
Q 003855 73 NLTGI-IPHSITNATKLVALDLGFNSFAGHILNTFG----NLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTIL 147 (791)
Q Consensus 73 ~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L 147 (791)
.++.. ++..+.++++|++|+|++|.+++..+..+. .+++|+.|++++|. ..+.... +..-+..+++|+.|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~----l~~l~~~~~~L~~L 216 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSA----LERLVTRCPNLKSL 216 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHH----HHHHHHHCTTCCEE
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHH----HHHHHHhCCCCcEE
Confidence 55532 344455788899999999988765554444 55688999888886 2221111 11112456888999
Q ss_pred EccCCCCcccCChhhhhhhhhhhhhhcccc-------cccccCCccccCCCCCCEE-EccCCccccccCccccCCCCCCE
Q 003855 148 SFGSNPLGGILPPVIGNFSASLQKFYAYEC-------KLKGNIPQEIGNLSGLTLL-SLHSNDLNGTISPTMGRLKRLQG 219 (791)
Q Consensus 148 ~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~ 219 (791)
++++|.-.+.++..+... ++|++|.+..+ .+.+ ++..+.++++|+.| .+.+.... ..+..+..+++|++
T Consensus 217 ~L~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~ 293 (594)
T 2p1m_B 217 KLNRAVPLEKLATLLQRA-PQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTT 293 (594)
T ss_dssp ECCTTSCHHHHHHHHHHC-TTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCE
T ss_pred ecCCCCcHHHHHHHHhcC-CcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchh-hHHHHHHhhCCCCE
Confidence 998883222244444333 45777764433 2222 22244555555555 23322221 22333334555555
Q ss_pred EEcccccCcccCC-ccccccCCCceEEecCCccCCC-CCccccCCCCCcEEEcC---------CCcCCCCCCcccc-CCC
Q 003855 220 LSLRNNNLEGSIP-YDLCHLKLMFGIRLTGNKLSGH-IPPCLVSLTSLRELHLG---------SNKLTSSIPSSLW-SLE 287 (791)
Q Consensus 220 L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~L~---------~N~l~~~~~~~~~-~l~ 287 (791)
|+|++|.+++... ..+..+++|+.|++++| +... ++.....+++|++|+++ .+.+++.....+. .++
T Consensus 294 L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~ 372 (594)
T 2p1m_B 294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372 (594)
T ss_dssp EECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCT
T ss_pred EEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhch
Confidence 6665555442211 12334555555555555 2211 11112235555555552 2333322111121 245
Q ss_pred CCCeEEccCCcCcccCCcccc-cCCCCCEEecC--C----cccCCCCC-----cchhccccccccccccccCCCCCCccc
Q 003855 288 YILDINLSSNSLNDSLPSNVQ-KLKVLTVLDLS--R----NQLSGDIP-----STIGALKDLETLSLARNQFQGPIPESV 355 (791)
Q Consensus 288 ~L~~L~l~~N~i~~~~~~~~~-~l~~L~~L~l~--~----N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~ 355 (791)
+|+.|.++.|.+++.....+. .+++|+.|+++ + |.+++... ..+..+++|+.|++++ .+++..+..+
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l 451 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI 451 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence 555555555555543333333 35555555555 2 33331111 1134455555555544 3433333333
Q ss_pred CC-CCCCcEEEccCCccCCCCchhh-hhcccCceEEccCCCCcccCC--CCCCCcCCccccccCCc
Q 003855 356 GS-LISLESLDLSGNNLSGKIPKSL-ETLSQLKQFNVSHNRLEGEIP--VKGSFKNFSVESFFGNY 417 (791)
Q Consensus 356 ~~-l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~l~l~~N~l~~~~~--~~~~~~~l~~~~~~~n~ 417 (791)
+. +++|+.|+|++|.+++..+..+ ..+++|+.|++++|++++... ....+++|+.+.+.+|+
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 33 4555555555555544333333 445555555555555533221 11224445555554443
No 331
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1e-27 Score=277.04 Aligned_cols=374 Identities=16% Similarity=0.134 Sum_probs=260.6
Q ss_pred ccCCCCCCeeecCCCcccccCCcccc-CCCCCcEEeCCCC-cCcccCCchhhhcCCCccEEEccCCcceecCCccC----
Q 003855 9 IGNLQNLQYLVFAENNLSGLVPPTIF-NISTMRILTLEGN-QLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSI---- 82 (791)
Q Consensus 9 ~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~---- 82 (791)
...+++|++|+|++|.+++..+..+. .+++|++|+|++| .+++.....+...+++|++|+|++|.+++..+..+
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 35788999999999999887777776 7899999999999 66533223344348999999999999886554444
Q ss_pred cCCCCCCEEeccCcccccccccc----ccccccccccccccc-cccccCCCccccccccccCCCCCCcEEEccCCCC---
Q 003855 83 TNATKLVALDLGFNSFAGHILNT----FGNLRHLSLLSQVMN-NLTTESSSADQWSFLSSLTNCRNLTILSFGSNPL--- 154 (791)
Q Consensus 83 ~~l~~L~~L~L~~N~i~~~~~~~----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l--- 154 (791)
..+++|++|+|++|. ..+.... +.++++|+.|++++| .+.. ++..+..+++|+.|+++.+..
T Consensus 181 ~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~---------l~~~~~~~~~L~~L~l~~~~~~~~ 250 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK---------LATLLQRAPQLEELGTGGYTAEVR 250 (594)
T ss_dssp TTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH---------HHHHHHHCTTCSEEECSBCCCCCC
T ss_pred hcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH---------HHHHHhcCCcceEcccccccCccc
Confidence 367799999999997 2222233 345699999999988 3332 234467889999999776643
Q ss_pred ----cccCChhhhhhhhhhhhh-hcccccccccCCccccCCCCCCEEEccCCccccccCc-cccCCCCCCEEEcccccCc
Q 003855 155 ----GGILPPVIGNFSASLQKF-YAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISP-TMGRLKRLQGLSLRNNNLE 228 (791)
Q Consensus 155 ----~~~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~ 228 (791)
.+ ++..+.++ ++|+.| .+.+... +.++..+..+++|+.|+|++|.++..... .+..+++|++|++++| +.
T Consensus 251 ~~~~~~-l~~~l~~~-~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~ 326 (594)
T 2p1m_B 251 PDVYSG-LSVALSGC-KELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE 326 (594)
T ss_dssp HHHHHH-HHHHHHTC-TTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH
T ss_pred hhhHHH-HHHHHhcC-CCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC
Confidence 21 11122221 234444 2222221 23444455778999999999997643322 3568899999999988 54
Q ss_pred cc-CCccccccCCCceEEecC---------CccCCCCCcccc-CCCCCcEEEcCCCcCCCCCCcccc-CCCCCCeEEcc-
Q 003855 229 GS-IPYDLCHLKLMFGIRLTG---------NKLSGHIPPCLV-SLTSLRELHLGSNKLTSSIPSSLW-SLEYILDINLS- 295 (791)
Q Consensus 229 ~~-~~~~~~~l~~L~~L~L~~---------N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~- 295 (791)
.. ++.....+++|+.|++++ +.+++.....+. ++++|+.|.++.|.+++.....+. .+++|+.|+++
T Consensus 327 ~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~ 406 (594)
T 2p1m_B 327 DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI 406 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeec
Confidence 22 222334588999999943 455533233333 478999999999998865555554 57899999999
Q ss_pred -C----CcCccc-----CCcccccCCCCCEEecCCcccCCCCCcchhc-cccccccccccccCCCCCCccc-CCCCCCcE
Q 003855 296 -S----NSLNDS-----LPSNVQKLKVLTVLDLSRNQLSGDIPSTIGA-LKDLETLSLARNQFQGPIPESV-GSLISLES 363 (791)
Q Consensus 296 -~----N~i~~~-----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~ 363 (791)
+ |.+++. ++..+..+++|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.
T Consensus 407 ~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~ 485 (594)
T 2p1m_B 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK 485 (594)
T ss_dssp SSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCE
T ss_pred ccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCE
Confidence 4 566532 122367788999999987 666555555555 8899999999999876544444 56889999
Q ss_pred EEccCCccCCCCch-hhhhcccCceEEccCCCCcc
Q 003855 364 LDLSGNNLSGKIPK-SLETLSQLKQFNVSHNRLEG 397 (791)
Q Consensus 364 L~l~~N~l~~~~~~-~~~~l~~L~~l~l~~N~l~~ 397 (791)
|+|++|++++..+. ....+++|+.|++++|+++.
T Consensus 486 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp EEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred EECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 99999999654443 44568999999999998843
No 332
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.92 E-value=7.3e-26 Score=254.99 Aligned_cols=186 Identities=19% Similarity=0.191 Sum_probs=146.3
Q ss_pred ccccccCCCcceEEEEEEecCCcEEEEEEeehhh--------hHHHHHHHHHHHHHHhccCCccceeeeeeccCCeeeEE
Q 003855 504 NECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQL--------ERAFRSFDSECEVLRNVRHRNLIKILSSCSNPDFKALV 575 (791)
Q Consensus 504 ~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 575 (791)
...+.||+|+||.||+|.. .++.+++|+..... ....+.+.+|++++++++||||+++..++...+..++|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 4456899999999999965 57889999764321 12245689999999999999999766666677778999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCC
Q 003855 576 LEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEG 655 (791)
Q Consensus 576 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~ 655 (791)
|||+++|+|.+++.. +..++.|+++||.||| +.+|+||||||+|||+++ .+||+|||+|+.....
T Consensus 418 mE~~~ggsL~~~l~~---------~~~i~~qi~~aL~~LH----~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~ 482 (540)
T 3en9_A 418 MSYINGKLAKDVIED---------NLDIAYKIGEIVGKLH----KNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLD 482 (540)
T ss_dssp EECCCSEEHHHHSTT---------CTHHHHHHHHHHHHHH----HTTEECTTCCTTSEEESS--SEEECCCTTCEECCCH
T ss_pred EECCCCCCHHHHHHH---------HHHHHHHHHHHHHHHH----HCcCccCCCCHHHEEECC--eEEEEECccCEECCCc
Confidence 999999999999876 4579999999999999 678999999999999999 9999999999987543
Q ss_pred CCcc-----eeecccccccccCCCccCC--CCCCccccHHhHHHHHHHHHhCCCCCC
Q 003855 656 EDSV-----TQTMTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLLMETFTRKRPTD 705 (791)
Q Consensus 656 ~~~~-----~~~~~~g~~~y~aPE~~~~--~~~~~~~Dv~s~G~vl~elltg~~p~~ 705 (791)
.... ......||+.|||||++.. ..|+.++|+|+..+-..+-+.++.+|.
T Consensus 483 ~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 483 EDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred cccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 2211 1234579999999998876 568888999999999999988887764
No 333
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=5.2e-26 Score=244.98 Aligned_cols=265 Identities=19% Similarity=0.177 Sum_probs=138.1
Q ss_pred eeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCc----hhhhcCC-CccEEEccCCcceecCCccCcCC-----C
Q 003855 17 YLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPS----TVGHLLP-NIESLLLAANNLTGIIPHSITNA-----T 86 (791)
Q Consensus 17 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l-----~ 86 (791)
+++|++|++++.+|..+...++|++|+|++|.++ ..+. ..+..++ +|++|+|++|.|++..+..|..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4567777777777776666666777777777776 4442 2223355 67777777777776656666554 6
Q ss_pred CCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCC-CCCcEEEccCCCCcccCChhhhhh
Q 003855 87 KLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNC-RNLTILSFGSNPLGGILPPVIGNF 165 (791)
Q Consensus 87 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~~ 165 (791)
+|++|+|++|++++..+..+... +..+ ++|++|+|++|++++..+..+...
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~----------------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 132 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKT----------------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQA 132 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHH----------------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHH----------------------------HHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence 77777777777766555443332 2222 344444444444443322222211
Q ss_pred hhhhhhhhcccccccccCCccccCC-CCCCEEEccCCccccccC----ccccCCC-CCCEEEcccccCcccCCccccc--
Q 003855 166 SASLQKFYAYECKLKGNIPQEIGNL-SGLTLLSLHSNDLNGTIS----PTMGRLK-RLQGLSLRNNNLEGSIPYDLCH-- 237 (791)
Q Consensus 166 ~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~----~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~-- 237 (791)
+..+ ++|++|+|++|+++...+ ..+..++ +|++|+|++|+|++..+..+..
T Consensus 133 ---------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 191 (362)
T 3goz_A 133 ---------------------FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL 191 (362)
T ss_dssp ---------------------HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred ---------------------HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH
Confidence 1121 244444444444442211 1122222 4444555544444333332222
Q ss_pred --c-CCCceEEecCCccCCC----CCccccC-CCCCcEEEcCCCcCCCCCC----ccccCCCCCCeEEccCCcCccc---
Q 003855 238 --L-KLMFGIRLTGNKLSGH----IPPCLVS-LTSLRELHLGSNKLTSSIP----SSLWSLEYILDINLSSNSLNDS--- 302 (791)
Q Consensus 238 --l-~~L~~L~L~~N~i~~~----~~~~~~~-l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~i~~~--- 302 (791)
+ ++|+.|+|++|.|++. ++..+.. .++|++|+|++|++++..+ ..+..+++|+.|+|++|.+.+.
T Consensus 192 ~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~ 271 (362)
T 3goz_A 192 ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH
T ss_pred HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHH
Confidence 2 3455555555554432 2233333 2356666666666654332 2334556666666666664322
Q ss_pred ----CCcccccCCCCCEEecCCcccCCCCCcch
Q 003855 303 ----LPSNVQKLKVLTVLDLSRNQLSGDIPSTI 331 (791)
Q Consensus 303 ----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 331 (791)
++..+..+++|+.||+++|.+.+..+..+
T Consensus 272 ~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 272 QCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp HHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred HHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 22345666777777777777775544433
No 334
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.6e-26 Score=251.52 Aligned_cols=189 Identities=20% Similarity=0.229 Sum_probs=99.2
Q ss_pred ccCCCCCCEEEccCCcccc----ccCccccCCCCCCEEEcccccCcccCCcccc----cc---------CCCceEEecCC
Q 003855 187 IGNLSGLTLLSLHSNDLNG----TISPTMGRLKRLQGLSLRNNNLEGSIPYDLC----HL---------KLMFGIRLTGN 249 (791)
Q Consensus 187 ~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~l---------~~L~~L~L~~N 249 (791)
|..+++|++|+|++|.++. .++..+..+++|++|+|++|.|+...+..+. .+ ++|+.|+|++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 3445555555555555553 2334445555555555555555433222222 22 55555555555
Q ss_pred ccC-CCCC---ccccCCCCCcEEEcCCCcCCC-----CCCccccCCCCCCeEEccCCcCc----ccCCcccccCCCCCEE
Q 003855 250 KLS-GHIP---PCLVSLTSLRELHLGSNKLTS-----SIPSSLWSLEYILDINLSSNSLN----DSLPSNVQKLKVLTVL 316 (791)
Q Consensus 250 ~i~-~~~~---~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~l~~N~i~----~~~~~~~~~l~~L~~L 316 (791)
+++ ...+ ..+..+++|++|+|++|+++. ..+..+..+++|+.|+|++|.++ ..+|..+..+++|+.|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 554 2222 345556666666666666652 22335555666666666666664 3455556666666666
Q ss_pred ecCCcccCCC----CCcchhc--cccccccccccccCCC----CCCccc-CCCCCCcEEEccCCccCCCC
Q 003855 317 DLSRNQLSGD----IPSTIGA--LKDLETLSLARNQFQG----PIPESV-GSLISLESLDLSGNNLSGKI 375 (791)
Q Consensus 317 ~l~~N~l~~~----~~~~~~~--l~~L~~L~L~~N~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~ 375 (791)
+|++|.+++. ++..+.. +++|+.|+|++|.+++ .+|..+ .++++|+.|+|++|++++..
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6666666543 2333322 5555555555555553 244444 34556666666666665544
No 335
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=2.4e-24 Score=226.79 Aligned_cols=202 Identities=19% Similarity=0.217 Sum_probs=166.3
Q ss_pred CCCCCEEEccCCccccccCccc--cCCCCCCEEEcccccCcccCC----ccccccCCCceEEecCCccCCCCCccccCCC
Q 003855 190 LSGLTLLSLHSNDLNGTISPTM--GRLKRLQGLSLRNNNLEGSIP----YDLCHLKLMFGIRLTGNKLSGHIPPCLVSLT 263 (791)
Q Consensus 190 l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 263 (791)
+++|++|+|++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..+++|+.|+|++|++++..+..|++++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4569999999999988888887 889999999999999986555 3455788999999999999888888899999
Q ss_pred CCcEEEcCCCcCCCC---C-CccccCCCCCCeEEccCCcCcccCCc----ccccCCCCCEEecCCcccCCCCCcchhcc-
Q 003855 264 SLRELHLGSNKLTSS---I-PSSLWSLEYILDINLSSNSLNDSLPS----NVQKLKVLTVLDLSRNQLSGDIPSTIGAL- 334 (791)
Q Consensus 264 ~L~~L~L~~N~l~~~---~-~~~~~~l~~L~~L~l~~N~i~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l- 334 (791)
+|++|+|++|++.+. . +..+..+++|++|+|++|+++. ++. .+..+++|++|+|++|++++..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 999999999998642 1 2334678899999999999963 233 35788999999999999997778777766
Q ss_pred --ccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcc
Q 003855 335 --KDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEG 397 (791)
Q Consensus 335 --~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~ 397 (791)
++|++|+|++|+|+ .+|..+. ++|+.|+|++|+|++. |. +..+++|+.|++++|+|+.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 69999999999999 6777664 7999999999999964 43 6788999999999999874
No 336
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=5.1e-24 Score=215.24 Aligned_cols=196 Identities=18% Similarity=0.174 Sum_probs=140.2
Q ss_pred CCCEEEccCCccccccCccccCCCCCCEEEccccc-CcccCCccccccCCCceEEecC-CccCCCCCccccCCCCCcEEE
Q 003855 192 GLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNN-LEGSIPYDLCHLKLMFGIRLTG-NKLSGHIPPCLVSLTSLRELH 269 (791)
Q Consensus 192 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~ 269 (791)
+|+.|++++|+++++.+..|..+++|++|++++|+ +++..+..|.++++|+.|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777788777777766677777778888887776 7766666777777777777777 777766666777777788888
Q ss_pred cCCCcCCCCCCccccCCCCCC---eEEccCC-cCcccCCcccccCCCCC-EEecCCcccCCCCCcchhcccccccccccc
Q 003855 270 LGSNKLTSSIPSSLWSLEYIL---DINLSSN-SLNDSLPSNVQKLKVLT-VLDLSRNQLSGDIPSTIGALKDLETLSLAR 344 (791)
Q Consensus 270 L~~N~l~~~~~~~~~~l~~L~---~L~l~~N-~i~~~~~~~~~~l~~L~-~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~ 344 (791)
+++|++++ +|. |..+++|+ +|++++| .+++..+..|..+++|+ .|++++|+++...+..|.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 88777775 444 67777777 7777777 77766666677777777 7888887777333333444 6777777777
Q ss_pred cc-CCCCCCcccCCC-CCCcEEEccCCccCCCCchhhhhcccCceEEccCC
Q 003855 345 NQ-FQGPIPESVGSL-ISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHN 393 (791)
Q Consensus 345 N~-l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N 393 (791)
|+ +++..+..|..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 74 775556667777 7777777777777744333 4566777777665
No 337
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=3.1e-25 Score=238.96 Aligned_cols=123 Identities=21% Similarity=0.255 Sum_probs=97.1
Q ss_pred CCccCCccccCCCCCCeeecCCCcccccCC----ccccCCC-CCcEEeCCCCcCcccCCchhhhc----CCCccEEEccC
Q 003855 1 MAGQIPTEIGNLQNLQYLVFAENNLSGLVP----PTIFNIS-TMRILTLEGNQLSGRLPSTVGHL----LPNIESLLLAA 71 (791)
Q Consensus 1 ~~g~lp~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~~----l~~L~~L~L~~ 71 (791)
++|.+|..+...++|++|+|++|+|++..+ +.|.+++ +|++|+|++|++++..+..+... .++|++|+|++
T Consensus 10 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 10 GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp TCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred chHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC
Confidence 478888888888889999999999998877 8888999 99999999999986656666552 28999999999
Q ss_pred CcceecCCccCc----CC-CCCCEEeccCcccccccccccccc-----cccccccccccccc
Q 003855 72 NNLTGIIPHSIT----NA-TKLVALDLGFNSFAGHILNTFGNL-----RHLSLLSQVMNNLT 123 (791)
Q Consensus 72 N~l~~~~~~~~~----~l-~~L~~L~L~~N~i~~~~~~~~~~l-----~~L~~L~l~~n~l~ 123 (791)
|.+++..+..+. .+ ++|++|+|++|+++......+... ++|+.|++++|+++
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 999977666444 44 899999999999987776655432 35555555555554
No 338
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=3.3e-26 Score=249.09 Aligned_cols=245 Identities=17% Similarity=0.240 Sum_probs=195.5
Q ss_pred ccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCcc---ccccCccc
Q 003855 135 LSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDL---NGTISPTM 211 (791)
Q Consensus 135 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~ 211 (791)
+..+..+++|+.|+|++|.++...+..+ +..|..+++|+.|+|++|.+ ++.+|..+
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l---------------------~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~ 83 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWL---------------------SENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHH---------------------HHTTTTCTTCCEEECCSCCTTSCGGGSHHHH
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHH---------------------HHHHHhCCCccEEeCcccccCccccchhHHH
Confidence 4456777888888888888875433222 23466788899999988644 44444444
Q ss_pred -------cCCCCCCEEEcccccCcc----cCCccccccCCCceEEecCCccCCCCCcccc----CC---------CCCcE
Q 003855 212 -------GRLKRLQGLSLRNNNLEG----SIPYDLCHLKLMFGIRLTGNKLSGHIPPCLV----SL---------TSLRE 267 (791)
Q Consensus 212 -------~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~----~l---------~~L~~ 267 (791)
..+++|++|+|++|.+++ .+|..+..+++|+.|+|++|.++...+..+. .+ ++|++
T Consensus 84 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~ 163 (386)
T 2ca6_A 84 RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS 163 (386)
T ss_dssp HHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred HHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcE
Confidence 789999999999999997 4677889999999999999999754444443 33 89999
Q ss_pred EEcCCCcCC-CCCC---ccccCCCCCCeEEccCCcCcc-----cCCcccccCCCCCEEecCCcccC----CCCCcchhcc
Q 003855 268 LHLGSNKLT-SSIP---SSLWSLEYILDINLSSNSLND-----SLPSNVQKLKVLTVLDLSRNQLS----GDIPSTIGAL 334 (791)
Q Consensus 268 L~L~~N~l~-~~~~---~~~~~l~~L~~L~l~~N~i~~-----~~~~~~~~l~~L~~L~l~~N~l~----~~~~~~~~~l 334 (791)
|+|++|+++ ...+ ..+..+++|++|++++|.++. ..+..+..+++|+.|+|++|.++ ..+|..+..+
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 999999997 3334 467788999999999999973 34447889999999999999995 4677888999
Q ss_pred ccccccccccccCCCC----CCccc--CCCCCCcEEEccCCccCC----CCchhh-hhcccCceEEccCCCCcccCC
Q 003855 335 KDLETLSLARNQFQGP----IPESV--GSLISLESLDLSGNNLSG----KIPKSL-ETLSQLKQFNVSHNRLEGEIP 400 (791)
Q Consensus 335 ~~L~~L~L~~N~l~~~----~~~~~--~~l~~L~~L~l~~N~l~~----~~~~~~-~~l~~L~~l~l~~N~l~~~~~ 400 (791)
++|+.|+|++|+|++. ++..+ +.+++|+.|+|++|++++ .+|..+ .++++|+.|++++|++++..+
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 9999999999999865 45666 448999999999999997 478777 668999999999999987664
No 339
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=3.6e-24 Score=216.37 Aligned_cols=197 Identities=19% Similarity=0.195 Sum_probs=166.0
Q ss_pred hhhhhhcccccccccCCccccCCCCCCEEEccCCc-cccccCccccCCCCCCEEEccc-ccCcccCCccccccCCCceEE
Q 003855 168 SLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSND-LNGTISPTMGRLKRLQGLSLRN-NNLEGSIPYDLCHLKLMFGIR 245 (791)
Q Consensus 168 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 245 (791)
+|++|++++|+++++.+..|.++++|++|++++|+ ++.+.+..|..+++|++|+|++ |+|++..+..|.++++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555555556678889999999999997 8888888999999999999998 999987788899999999999
Q ss_pred ecCCccCCCCCccccCCCCCc---EEEcCCC-cCCCCCCccccCCCCCC-eEEccCCcCcccCCcccccCCCCCEEecCC
Q 003855 246 LTGNKLSGHIPPCLVSLTSLR---ELHLGSN-KLTSSIPSSLWSLEYIL-DINLSSNSLNDSLPSNVQKLKVLTVLDLSR 320 (791)
Q Consensus 246 L~~N~i~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~l~~L~-~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~ 320 (791)
+++|++++ +|. +..+++|+ +|++++| ++++..+..|..+++|+ .|++++|+++...+..|.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 99999996 565 88899998 9999999 99987778899999999 9999999998555555555 8999999999
Q ss_pred cc-cCCCCCcchhcc-ccccccccccccCCCCCCcccCCCCCCcEEEccCCc
Q 003855 321 NQ-LSGDIPSTIGAL-KDLETLSLARNQFQGPIPESVGSLISLESLDLSGNN 370 (791)
Q Consensus 321 N~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 370 (791)
|+ +++..+..|..+ ++|+.|++++|++++ +|.. .+++|+.|+++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 95 987777889999 999999999999994 5543 67899999998764
No 340
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.2e-23 Score=220.70 Aligned_cols=213 Identities=24% Similarity=0.352 Sum_probs=176.6
Q ss_pred hhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecC
Q 003855 169 LQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTG 248 (791)
Q Consensus 169 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 248 (791)
+..+.+..+.+..... +..+++|+.|++++|.++.. + .+..+++|++|+|++|.+++..+ +..+++|+.|+|++
T Consensus 21 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG 94 (308)
T ss_dssp HHHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred HHHHHhCCCCcCceec--HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccC
Confidence 4455666666665433 45678899999999999854 3 68889999999999999985444 89999999999999
Q ss_pred CccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCC
Q 003855 249 NKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIP 328 (791)
Q Consensus 249 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 328 (791)
|++++. + .+..+++|++|++++|++++.. .+..+++|++|++++|.+++..+ +..+++|+.|++++|++++. +
T Consensus 95 n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~ 167 (308)
T 1h6u_A 95 NPLKNV-S-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-T 167 (308)
T ss_dssp CCCSCC-G-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-G
T ss_pred CcCCCc-h-hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-h
Confidence 999853 3 6889999999999999998643 38899999999999999986543 88999999999999999854 3
Q ss_pred cchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccC
Q 003855 329 STIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEI 399 (791)
Q Consensus 329 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~ 399 (791)
. +..+++|+.|++++|++++..+ +..+++|+.|+|++|++++..+ +..+++|+.|++++|++++.+
T Consensus 168 ~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 168 P-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp G-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred h-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence 3 8899999999999999985433 8889999999999999996553 889999999999999998744
No 341
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=3.6e-23 Score=210.55 Aligned_cols=179 Identities=23% Similarity=0.252 Sum_probs=103.6
Q ss_pred CCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcC
Q 003855 192 GLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLG 271 (791)
Q Consensus 192 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 271 (791)
+.+.++++++.++ .+|..+. ++|+.|+|++|.+++..+..|..+++|+.|+|++|.|++..+..|.++++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4566777777777 3344433 467777777777776666666666666666666666666556566666666666666
Q ss_pred CCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCC
Q 003855 272 SNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPI 351 (791)
Q Consensus 272 ~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 351 (791)
+|++++..+..|..+++|++|+|++|.|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 66666555555555556666666666555444444555555555555555555444434555555555555555555444
Q ss_pred CcccCCCCCCcEEEccCCccCC
Q 003855 352 PESVGSLISLESLDLSGNNLSG 373 (791)
Q Consensus 352 ~~~~~~l~~L~~L~l~~N~l~~ 373 (791)
+..+..+++|+.|+|++|++++
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCT
T ss_pred HHHHhCCCCCCEEEeeCCceeC
Confidence 4444445555555555555443
No 342
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=4.1e-23 Score=210.20 Aligned_cols=183 Identities=22% Similarity=0.232 Sum_probs=158.1
Q ss_pred CCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEc
Q 003855 215 KRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINL 294 (791)
Q Consensus 215 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 294 (791)
.+.++++++++.++ .+|..+. ++++.|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35678999999988 5665554 58899999999999888888999999999999999999888888899999999999
Q ss_pred cCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCC
Q 003855 295 SSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGK 374 (791)
Q Consensus 295 ~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 374 (791)
++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999887778888999999999999999877777788899999999999999976677888899999999999999988
Q ss_pred CchhhhhcccCceEEccCCCCcccCC
Q 003855 375 IPKSLETLSQLKQFNVSHNRLEGEIP 400 (791)
Q Consensus 375 ~~~~~~~l~~L~~l~l~~N~l~~~~~ 400 (791)
.+..|..+++|+.|++++|+++|...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred CHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 88888899999999999999988743
No 343
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.2e-23 Score=218.72 Aligned_cols=196 Identities=22% Similarity=0.329 Sum_probs=147.5
Q ss_pred cCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCC
Q 003855 138 LTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRL 217 (791)
Q Consensus 138 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 217 (791)
+..+++|++|++++|.++.. + .+..+++|+.|+|++|.+++..+ +..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l--------------------------~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L 87 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI--------------------------E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKI 87 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC--------------------------T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSC
T ss_pred HHHcCCcCEEEeeCCCccCc--------------------------h-hhhccCCCCEEEccCCcCCCChh--HccCCCC
Confidence 34456677777777766531 1 35567778888888887775443 7777888
Q ss_pred CEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCC
Q 003855 218 QGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSN 297 (791)
Q Consensus 218 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 297 (791)
++|+|++|++++. ..+..+++|+.|++++|++++. +. +..+++|++|++++|++++..+ +..+++|+.|++++|
T Consensus 88 ~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 88 TELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA 161 (308)
T ss_dssp CEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred CEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCC
Confidence 8888888887743 3577788888888888888753 33 7888888888888888875543 778888888888888
Q ss_pred cCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCC
Q 003855 298 SLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGK 374 (791)
Q Consensus 298 ~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 374 (791)
.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++.. .+..+++|+.|+|++|++++.
T Consensus 162 ~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 162 QVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred cCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 8876433 8888889999999998885433 788899999999999998544 378899999999999999853
No 344
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=9.7e-23 Score=218.22 Aligned_cols=242 Identities=18% Similarity=0.174 Sum_probs=129.6
Q ss_pred cEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCcccccc-ccccccccccccccccc
Q 003855 40 RILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGH-ILNTFGNLRHLSLLSQV 118 (791)
Q Consensus 40 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~ 118 (791)
++++.++++++ ++|..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+. ..+.|
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f------------ 75 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF------------ 75 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB------------
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh------------
Confidence 56778888887 888765 35788888888888876667788888888888888876432 22233
Q ss_pred cccccccCCCccccccccccCCCCCCcE-EEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEE
Q 003855 119 MNNLTTESSSADQWSFLSSLTNCRNLTI-LSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLS 197 (791)
Q Consensus 119 ~n~l~~~~~~~~~~~~~~~l~~l~~L~~-L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 197 (791)
.++++|++ +.+++|+++. +.|..|.++++|++|+
T Consensus 76 --------------------~~L~~l~~~l~~~~N~l~~-------------------------l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 76 --------------------SNLPKLHEIRIEKANNLLY-------------------------INPEAFQNLPNLQYLL 110 (350)
T ss_dssp --------------------CSCTTCCEEEEEEETTCCE-------------------------ECTTSBCCCTTCCEEE
T ss_pred --------------------hcchhhhhhhcccCCcccc-------------------------cCchhhhhcccccccc
Confidence 33333332 3333444442 2334456666666666
Q ss_pred ccCCccccccCccccCCCCCCEEEccc-ccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCC
Q 003855 198 LHSNDLNGTISPTMGRLKRLQGLSLRN-NNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLT 276 (791)
Q Consensus 198 L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 276 (791)
+++|+|+...+..+....++..|++.+ |++....+..|..+. ..++.|+|++|+|+
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~-----------------------~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-----------------------FESVILWLNKNGIQ 167 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB-----------------------SSCEEEECCSSCCC
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcc-----------------------hhhhhhcccccccc
Confidence 666666655555555555666666644 345533333444332 13444555555554
Q ss_pred CCCCccccCCCCCCeEEccC-CcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCccc
Q 003855 277 SSIPSSLWSLEYILDINLSS-NSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESV 355 (791)
Q Consensus 277 ~~~~~~~~~l~~L~~L~l~~-N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 355 (791)
.+.+. .....+|+.|++++ |.++.+.+..|..+++|+.|||++|+|+...+..|.++++|+.+++ +.++ .+| .+
T Consensus 168 ~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~-~lP-~l 242 (350)
T 4ay9_X 168 EIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLP-TL 242 (350)
T ss_dssp EECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCC-CCC-CT
T ss_pred CCChh-hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcC-cCC-Cc
Confidence 32222 22233444555442 3443333334555555555555555555333333444444444333 2233 344 25
Q ss_pred CCCCCCcEEEccCCc
Q 003855 356 GSLISLESLDLSGNN 370 (791)
Q Consensus 356 ~~l~~L~~L~l~~N~ 370 (791)
..+++|+.++++++.
T Consensus 243 ~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 243 EKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCSCCEEECSCHH
T ss_pred hhCcChhhCcCCCCc
Confidence 556666666665443
No 345
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=3e-23 Score=218.29 Aligned_cols=224 Identities=18% Similarity=0.206 Sum_probs=187.3
Q ss_pred CCCCEEEccCCccccccCc---cccCCCCCCEEEcccccCcccCCccc--cccCCCceEEecCCccCCCCC----ccccC
Q 003855 191 SGLTLLSLHSNDLNGTISP---TMGRLKRLQGLSLRNNNLEGSIPYDL--CHLKLMFGIRLTGNKLSGHIP----PCLVS 261 (791)
Q Consensus 191 ~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~----~~~~~ 261 (791)
..++.|.+.++.++..... .+..+++|++|+|++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4578889988887632111 12245779999999999999999888 999999999999999997655 44567
Q ss_pred CCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCccc--C--CcccccCCCCCEEecCCcccCCCCCc----chhc
Q 003855 262 LTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDS--L--PSNVQKLKVLTVLDLSRNQLSGDIPS----TIGA 333 (791)
Q Consensus 262 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~--~--~~~~~~l~~L~~L~l~~N~l~~~~~~----~~~~ 333 (791)
+++|++|+|++|++.+..+..|..+++|++|+|++|++.+. . +..+..+++|++|+|++|+++ .++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 99999999999999988889999999999999999998652 1 233478999999999999997 3444 3578
Q ss_pred cccccccccccccCCCCCCcccCCC---CCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCCCCCCcCCcc
Q 003855 334 LKDLETLSLARNQFQGPIPESVGSL---ISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVKGSFKNFSV 410 (791)
Q Consensus 334 l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~ 410 (791)
+++|++|+|++|++++..|..+..+ ++|+.|+|++|+|+ .+|..+. ++|+.|+|++|++++. |....+++++.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccE
Confidence 8999999999999998878888776 69999999999999 6677664 8999999999999985 33567889999
Q ss_pred ccccCCccc
Q 003855 411 ESFFGNYAL 419 (791)
Q Consensus 411 ~~~~~n~~~ 419 (791)
+.+.+|++.
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 999999864
No 346
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=1.7e-23 Score=224.03 Aligned_cols=247 Identities=16% Similarity=0.133 Sum_probs=179.0
Q ss_pred ccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCccee-cCCccCcCCCC
Q 003855 9 IGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTG-IIPHSITNATK 87 (791)
Q Consensus 9 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~ 87 (791)
+..+.. +.++.++++++ .+|..+ .+++++|+|++|+|+ .+|...|..+++|++|+|++|++.+ +.+.+|.++++
T Consensus 6 ~C~C~~-~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 6 ICHCSN-RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp SSEEET-TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred ccEeeC-CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 344433 67889999998 557666 368999999999998 8998777779999999999999865 44568899998
Q ss_pred CCE-EeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccC-CCCcccCChhhhhh
Q 003855 88 LVA-LDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGS-NPLGGILPPVIGNF 165 (791)
Q Consensus 88 L~~-L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~~ 165 (791)
|.+ +.+++|+++.+.++.|.++++|+.|++++|+|..++... +....++..|++.+ |+++...+
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~--------~~~~~~l~~l~l~~~~~i~~l~~------ 146 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH--------KIHSLQKVLLDIQDNINIHTIER------ 146 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCT--------TCCBSSCEEEEEESCTTCCEECT------
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccccCCchh--------hcccchhhhhhhccccccccccc------
Confidence 875 667789999999999999999999999999998876543 56667788888865 45654322
Q ss_pred hhhhhhhhcccccccccCCccccCC-CCCCEEEccCCccccccCccccCCCCCCEEEccc-ccCcccCCccccccCCCce
Q 003855 166 SASLQKFYAYECKLKGNIPQEIGNL-SGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRN-NNLEGSIPYDLCHLKLMFG 243 (791)
Q Consensus 166 ~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~ 243 (791)
..|..+ ..++.|+|++|+|+.+.+..| ...+|++|++++ |.++.+.++.|..+++|+.
T Consensus 147 -------------------~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~ 206 (350)
T 4ay9_X 147 -------------------NSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206 (350)
T ss_dssp -------------------TSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSE
T ss_pred -------------------cchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccch
Confidence 234444 357778888888875555444 456788888864 6676555567788888888
Q ss_pred EEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCc
Q 003855 244 IRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNS 298 (791)
Q Consensus 244 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 298 (791)
|+|++|+|+...+..+. +|+.|.+.++.-...+| .+..+++|+.++++++.
T Consensus 207 LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 207 LDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp EECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred hhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 88888888855444444 45555544433323455 47778888888887654
No 347
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=2e-24 Score=230.46 Aligned_cols=254 Identities=16% Similarity=0.206 Sum_probs=148.0
Q ss_pred CcEEeCCCCcCcccCCchhhhcC--CCccEEEccCCcceecCCccCcCCCCCCEEeccCcccccc-cccccccccccccc
Q 003855 39 MRILTLEGNQLSGRLPSTVGHLL--PNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGH-ILNTFGNLRHLSLL 115 (791)
Q Consensus 39 L~~L~L~~n~l~~~~p~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L 115 (791)
++.|++++|.+. |..+.. + ++++.|++++|.+.+..+. +..+++|++|+|++|.++.. .+..+..+++|+.|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 556666666654 222222 3 5666666666666654443 34566666666666666544 45556666666666
Q ss_pred ccccccccccCCCccccccccccCCCCCCcEEEccCC-CCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCC
Q 003855 116 SQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSN-PLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLT 194 (791)
Q Consensus 116 ~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 194 (791)
++++|.++.. .+..+..+++|++|++++| .+++.. ++..+.++++|+
T Consensus 124 ~L~~~~l~~~--------~~~~l~~~~~L~~L~L~~~~~l~~~~------------------------l~~~~~~~~~L~ 171 (336)
T 2ast_B 124 SLEGLRLSDP--------IVNTLAKNSNLVRLNLSGCSGFSEFA------------------------LQTLLSSCSRLD 171 (336)
T ss_dssp ECTTCBCCHH--------HHHHHTTCTTCSEEECTTCBSCCHHH------------------------HHHHHHHCTTCC
T ss_pred eCcCcccCHH--------HHHHHhcCCCCCEEECCCCCCCCHHH------------------------HHHHHhcCCCCC
Confidence 6666665432 2334566777777777777 455310 112234456666
Q ss_pred EEEccCC-ccccc-cCccccCCC-CCCEEEcccc--cCc-ccCCccccccCCCceEEecCCc-cCCCCCccccCCCCCcE
Q 003855 195 LLSLHSN-DLNGT-ISPTMGRLK-RLQGLSLRNN--NLE-GSIPYDLCHLKLMFGIRLTGNK-LSGHIPPCLVSLTSLRE 267 (791)
Q Consensus 195 ~L~L~~N-~l~~~-~~~~~~~l~-~L~~L~L~~N--~l~-~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~ 267 (791)
+|++++| .+++. .+..+..++ +|++|+|++| .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|++
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 6666666 66543 344556666 6777777666 343 2345556666777777777776 55555566677777777
Q ss_pred EEcCCCc-CCCCCCccccCCCCCCeEEccCCcCcccCCcccccC-CCCCEEecCCcccCCCCCcchhc
Q 003855 268 LHLGSNK-LTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKL-KVLTVLDLSRNQLSGDIPSTIGA 333 (791)
Q Consensus 268 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~ 333 (791)
|++++|. +.......+..+++|+.|++++| ++. ..+..+ ..|+.|++++|++++..|..++.
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 7777774 22222224666777777777777 432 223333 23666667778877777766554
No 348
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=3e-24 Score=229.09 Aligned_cols=252 Identities=21% Similarity=0.255 Sum_probs=199.1
Q ss_pred CCcEEEccCCCCcccCChhhhhh-hhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccc-cCccccCCCCCCEE
Q 003855 143 NLTILSFGSNPLGGILPPVIGNF-SASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGT-ISPTMGRLKRLQGL 220 (791)
Q Consensus 143 ~L~~L~L~~N~l~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L 220 (791)
.++.|++++|.+. +..+..+ ...++.|++.+|.+.+..+. +..+++|++|+|++|.+++. .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4778888888876 3444443 25678888888888876665 55789999999999998865 67788899999999
Q ss_pred EcccccCcccCCccccccCCCceEEecCC-ccCCC-CCccccCCCCCcEEEcCCC-cCCCC-CCccccCCC-CCCeEEcc
Q 003855 221 SLRNNNLEGSIPYDLCHLKLMFGIRLTGN-KLSGH-IPPCLVSLTSLRELHLGSN-KLTSS-IPSSLWSLE-YILDINLS 295 (791)
Q Consensus 221 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~-~L~~L~l~ 295 (791)
+|++|.+++..+..+..+++|+.|+|++| .+++. ++..+.++++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99999998888888899999999999999 67742 5666888999999999999 88754 466678888 99999999
Q ss_pred CC--cCc-ccCCcccccCCCCCEEecCCcc-cCCCCCcchhcccccccccccccc-CCCCCCcccCCCCCCcEEEccCCc
Q 003855 296 SN--SLN-DSLPSNVQKLKVLTVLDLSRNQ-LSGDIPSTIGALKDLETLSLARNQ-FQGPIPESVGSLISLESLDLSGNN 370 (791)
Q Consensus 296 ~N--~i~-~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 370 (791)
+| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +.......++.+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 99 555 4566777889999999999999 776777888999999999999996 32222225788999999999999
Q ss_pred cCCCCchhhhhc-ccCceEEccCCCCcccCCCC
Q 003855 371 LSGKIPKSLETL-SQLKQFNVSHNRLEGEIPVK 402 (791)
Q Consensus 371 l~~~~~~~~~~l-~~L~~l~l~~N~l~~~~~~~ 402 (791)
++. ..+..+ ..++.|++++|++++..|..
T Consensus 283 i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 283 VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 442 344444 34777789999999887753
No 349
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.86 E-value=1e-22 Score=210.09 Aligned_cols=149 Identities=16% Similarity=0.140 Sum_probs=119.2
Q ss_pred HHHhhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhh------------------HHHHHHHHHHHHHHhccCCc
Q 003855 497 QRATDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLE------------------RAFRSFDSECEVLRNVRHRN 558 (791)
Q Consensus 497 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~e~~~l~~l~h~n 558 (791)
......|.+.+.||+|+||.||+|+..+|+.||||++..... .....+.+|+.++++++ |
T Consensus 86 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~ 163 (282)
T 1zar_A 86 VRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G 163 (282)
T ss_dssp HHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T
T ss_pred HhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C
Confidence 333455677799999999999999997899999999864321 23467889999999998 4
Q ss_pred cceeeeeeccCCeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCC
Q 003855 559 LIKILSSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDEN 638 (791)
Q Consensus 559 iv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~ 638 (791)
+++.+++.. +..++||||+++|+|.+ +.. .....++.|++.||.||| +.+|+||||||+|||++ +
T Consensus 164 -~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~-------~~~~~i~~qi~~~l~~lH----~~giiHrDlkp~NILl~-~ 228 (282)
T 1zar_A 164 -LAVPKVYAW-EGNAVLMELIDAKELYR-VRV-------ENPDEVLDMILEEVAKFY----HRGIVHGDLSQYNVLVS-E 228 (282)
T ss_dssp -SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC-------SCHHHHHHHHHHHHHHHH----HTTEECSCCSTTSEEEE-T
T ss_pred -CCcCeEEec-cceEEEEEecCCCcHHH-cch-------hhHHHHHHHHHHHHHHHH----HCCCEeCCCCHHHEEEE-C
Confidence 666665543 55699999999999988 422 124569999999999999 67899999999999999 9
Q ss_pred CcEEEeeeccccccCCCCCcceeecccccccccCCCccC
Q 003855 639 MAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGS 677 (791)
Q Consensus 639 ~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~ 677 (791)
+.+||+|||+|+. +..|+|||++.
T Consensus 229 ~~vkl~DFG~a~~---------------~~~~~a~e~l~ 252 (282)
T 1zar_A 229 EGIWIIDFPQSVE---------------VGEEGWREILE 252 (282)
T ss_dssp TEEEECCCTTCEE---------------TTSTTHHHHHH
T ss_pred CcEEEEECCCCeE---------------CCCCCHHHHHH
Confidence 9999999999863 33478888753
No 350
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.1e-21 Score=191.46 Aligned_cols=163 Identities=25% Similarity=0.244 Sum_probs=121.4
Q ss_pred CCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEc
Q 003855 191 SGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHL 270 (791)
Q Consensus 191 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 270 (791)
++|++|++++|+++++.+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 46788888888887766667777888888888888887666666777778888888888777666666777788888888
Q ss_pred CCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCC
Q 003855 271 GSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGP 350 (791)
Q Consensus 271 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 350 (791)
++|++++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+ .+++|+.|+++.|+++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 8888876666667777777788887777776666667777778888887776653 345677777777777777
Q ss_pred CCcccCCCCC
Q 003855 351 IPESVGSLIS 360 (791)
Q Consensus 351 ~~~~~~~l~~ 360 (791)
+|..++.++.
T Consensus 181 ip~~~~~l~~ 190 (208)
T 2o6s_A 181 VRNSAGSVAP 190 (208)
T ss_dssp BBCTTSSBCT
T ss_pred eeccCccccC
Confidence 7777766654
No 351
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.6e-21 Score=190.86 Aligned_cols=179 Identities=23% Similarity=0.201 Sum_probs=102.6
Q ss_pred CEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCC
Q 003855 194 TLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSN 273 (791)
Q Consensus 194 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 273 (791)
+.++.+++.++.+ |..+ .++|++|+|++|++++..+..|..+++|+.|++++|++++..+..|.++++|++|+|++|
T Consensus 10 ~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4566777777633 3332 346777777777777555555666666666666666666555555666666666666666
Q ss_pred cCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCc
Q 003855 274 KLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPE 353 (791)
Q Consensus 274 ~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 353 (791)
++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 6665555555566666666666666655444445555555555555555554444445555555555555554432
Q ss_pred ccCCCCCCcEEEccCCccCCCCchhhhhc
Q 003855 354 SVGSLISLESLDLSGNNLSGKIPKSLETL 382 (791)
Q Consensus 354 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 382 (791)
.+++|+.|+++.|+++|.+|..++.+
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCccc
Confidence 22344555555555555555444433
No 352
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=3.7e-21 Score=216.35 Aligned_cols=169 Identities=25% Similarity=0.325 Sum_probs=107.5
Q ss_pred CCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEc
Q 003855 191 SGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHL 270 (791)
Q Consensus 191 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 270 (791)
++|+.|+|++|+|+ .+| ..+++|++|+|++|+|++ +|. +.. +|+.|+|++|+|++ +|. .+++|+.|+|
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 45667777777766 333 345667777777777764 444 444 67777777777764 443 4667777777
Q ss_pred CCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccc-------cccccc
Q 003855 271 GSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDL-------ETLSLA 343 (791)
Q Consensus 271 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L-------~~L~L~ 343 (791)
++|+|++ +|. .+++|+.|+|++|.|++ +|. |. ++|+.|+|++|+|+ .+|. |.. +| +.|+|+
T Consensus 148 s~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 148 DNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECC
T ss_pred CCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecC
Confidence 7777764 333 45667777777777765 444 44 66777777777776 4454 433 55 777777
Q ss_pred cccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhccc
Q 003855 344 RNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQ 384 (791)
Q Consensus 344 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 384 (791)
+|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus 216 ~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 77777 56666666777777777777777777777666544
No 353
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=2.7e-21 Score=192.02 Aligned_cols=156 Identities=23% Similarity=0.267 Sum_probs=101.5
Q ss_pred eEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCC-ccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCc
Q 003855 243 GIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIP-SSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRN 321 (791)
Q Consensus 243 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N 321 (791)
.+++++|.++ .+|..+. ..+++|+|++|+|++..+ ..|..+++|+.|+|++|.|++..+..|..+++|+.|+|++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4555555554 2333332 234566666666665433 34566666666666666666655556666677777777777
Q ss_pred ccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCC
Q 003855 322 QLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPV 401 (791)
Q Consensus 322 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~ 401 (791)
++++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|+|+|.++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 77665556667777777777777777766667777777777777777777776677777777777777777777776653
No 354
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.6e-20 Score=211.30 Aligned_cols=182 Identities=25% Similarity=0.358 Sum_probs=157.0
Q ss_pred CCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcC
Q 003855 192 GLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLG 271 (791)
Q Consensus 192 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 271 (791)
+|+.|+|++|+|++ +|..+ +++|++|+|++|+|+ .+| ..+++|+.|+|++|+|++ +|. +.+ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999997 55544 379999999999999 566 457999999999999996 666 665 99999999
Q ss_pred CCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCC
Q 003855 272 SNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPI 351 (791)
Q Consensus 272 ~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 351 (791)
+|+|++ +|. .+++|+.|+|++|.|++ +|. .+++|+.|+|++|+|++ +|. |. ++|+.|+|++|+|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 999997 555 68999999999999986 554 57899999999999996 666 65 99999999999999 67
Q ss_pred CcccCCCCCC-------cEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCC
Q 003855 352 PESVGSLISL-------ESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPV 401 (791)
Q Consensus 352 ~~~~~~l~~L-------~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~ 401 (791)
|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|+|++.+|.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 76 655 77 99999999999 6788888899999999999999997764
No 355
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=6.9e-21 Score=197.91 Aligned_cols=188 Identities=23% Similarity=0.334 Sum_probs=115.9
Q ss_pred hhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecC
Q 003855 169 LQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTG 248 (791)
Q Consensus 169 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 248 (791)
+..+.+..+.+.+..+ +..+++|+.|++++|.++.. +.+..+++|++|+|++|++++..+ +..+++|+.|++++
T Consensus 26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 4555666666654332 34677888888888888744 247778888888888888875433 77777777777777
Q ss_pred CccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCC
Q 003855 249 NKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIP 328 (791)
Q Consensus 249 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 328 (791)
|.+++ ++ .+..+++|++|++++|++++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..+
T Consensus 100 n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 100 NKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp SCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 77764 23 366777777777777777643 3455566666666666666543 345555566666666665553322
Q ss_pred cchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccC
Q 003855 329 STIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLS 372 (791)
Q Consensus 329 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 372 (791)
+..+++|+.|++++|++++ ++ .+..+++|+.|++++|+++
T Consensus 174 --l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred --hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 5555555555555555553 22 2555555555555555554
No 356
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=4e-21 Score=190.86 Aligned_cols=155 Identities=22% Similarity=0.294 Sum_probs=92.8
Q ss_pred eEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcc
Q 003855 243 GIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQ 322 (791)
Q Consensus 243 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~ 322 (791)
.+++++|.++ .+|..+. ++|+.|+|++|+|+++.+..|..+++|+.|+|++|.|++..|..|.++++|+.|+|++|+
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 3444444444 2333222 455555666665555555555556666666666666655555666666666666666666
Q ss_pred cCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCC
Q 003855 323 LSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIP 400 (791)
Q Consensus 323 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~ 400 (791)
|+...+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|++.|...
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 664444455666666666666666665556666666666666666666666666666666667777777776666543
No 357
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=1.3e-20 Score=202.46 Aligned_cols=176 Identities=23% Similarity=0.185 Sum_probs=107.0
Q ss_pred CEEEccCCccccccCccccCCCCCCEEEcccccCcccCCcccc-ccCCCceEEecCCccCCCCCccccCCCCCcEEEcCC
Q 003855 194 TLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLC-HLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGS 272 (791)
Q Consensus 194 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 272 (791)
+.+++++|+++. +|..+. ..++.|+|++|+|++..+..|. .+++|+.|+|++|+|++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 577888888874 444433 4577788888888766666666 677777777777777766666677777777777777
Q ss_pred CcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcch---hccccccccccccccCCC
Q 003855 273 NKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTI---GALKDLETLSLARNQFQG 349 (791)
Q Consensus 273 N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~ 349 (791)
|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..| ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77766555566666666666666666666556666666666666666666663322223 334445555555555543
Q ss_pred CCCcccCCCCC--CcEEEccCCccC
Q 003855 350 PIPESVGSLIS--LESLDLSGNNLS 372 (791)
Q Consensus 350 ~~~~~~~~l~~--L~~L~l~~N~l~ 372 (791)
..+..+..++. |+.|+|++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 33333444433 244444444444
No 358
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=3.8e-20 Score=210.63 Aligned_cols=199 Identities=23% Similarity=0.323 Sum_probs=153.6
Q ss_pred hhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEec
Q 003855 168 SLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLT 247 (791)
Q Consensus 168 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 247 (791)
.+..+.+..+.+....+ +..+++|+.|++++|.|... + .|..+++|+.|+|++|+|++..| +..+++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 35666777777765544 56778899999999998854 3 58889999999999999986554 8888899999999
Q ss_pred CCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCC
Q 003855 248 GNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDI 327 (791)
Q Consensus 248 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 327 (791)
+|.|++ ++ .+..+++|+.|+|++|+|.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..
T Consensus 96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 998884 33 688888899999999988753 4577888888888888888765 56788888888888888888655
Q ss_pred CcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhc
Q 003855 328 PSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETL 382 (791)
Q Consensus 328 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 382 (791)
| +..+++|+.|+|++|+|++ + ..+..+++|+.|+|++|++++.....+..+
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred h--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCCcccccccE
Confidence 5 7788888888888888875 3 357788888888888888875544443333
No 359
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=4.4e-20 Score=191.83 Aligned_cols=192 Identities=26% Similarity=0.354 Sum_probs=165.1
Q ss_pred CCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcC
Q 003855 192 GLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLG 271 (791)
Q Consensus 192 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 271 (791)
.+..+.+..+.++... .+..+++|++|++++|.++.. + .+..+++|+.|+|++|++++..+ +.++++|++|+++
T Consensus 25 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 3445567777777443 456789999999999999854 4 48899999999999999996544 9999999999999
Q ss_pred CCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCC
Q 003855 272 SNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPI 351 (791)
Q Consensus 272 ~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 351 (791)
+|++++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..
T Consensus 99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 99 ENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp SSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 9999853 3489999999999999999864 5789999999999999999964 67999999999999999999654
Q ss_pred CcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccC
Q 003855 352 PESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEI 399 (791)
Q Consensus 352 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~ 399 (791)
+ +..+++|+.|+|++|++++ ++ .+..+++|+.|++++|+++..+
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred h--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCc
Confidence 4 9999999999999999995 44 4899999999999999998744
No 360
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=5.9e-20 Score=209.09 Aligned_cols=130 Identities=30% Similarity=0.430 Sum_probs=80.6
Q ss_pred ccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCc
Q 003855 187 IGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLR 266 (791)
Q Consensus 187 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 266 (791)
+..+++|+.|+|++|.|++. +.+..+++|++|+|++|+|++. ..+..+++|+.|+|++|.|++. ..+..+++|+
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 156 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 156 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCS
T ss_pred hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCC
Confidence 44555666666666666532 2456666666666666666532 3466666666666666666643 4566666677
Q ss_pred EEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCC
Q 003855 267 ELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGD 326 (791)
Q Consensus 267 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~ 326 (791)
.|+|++|+|.+..| +..+++|+.|+|++|.|++. ..+..+++|+.|+|++|.+.+.
T Consensus 157 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 157 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred EEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 77777776665544 66666667777777666643 3466667777777777776643
No 361
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=1e-19 Score=180.66 Aligned_cols=134 Identities=22% Similarity=0.280 Sum_probs=85.2
Q ss_pred CCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecC
Q 003855 240 LMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLS 319 (791)
Q Consensus 240 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~ 319 (791)
+|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..|..|.++++|++|+|++|.|+...+..|..+++|+.|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 34444444444443444445555555555555555555555555555666666666666655444556666667777777
Q ss_pred CcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCC
Q 003855 320 RNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSG 373 (791)
Q Consensus 320 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 373 (791)
+|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++..
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 777766666677777777777777777776666677778888888888888864
No 362
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=1.7e-19 Score=180.40 Aligned_cols=137 Identities=28% Similarity=0.298 Sum_probs=76.3
Q ss_pred CCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhcccccccccc
Q 003855 263 TSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSL 342 (791)
Q Consensus 263 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 342 (791)
++|++|+|++|+|.+..|..|..+++|++|+|++|+|+...+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 44555555555555444444555555555555555554444444555555555555555555444444555555666666
Q ss_pred ccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCC
Q 003855 343 ARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIP 400 (791)
Q Consensus 343 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~ 400 (791)
++|+|+ .+|..+..+++|+.|+|++|+|++..+..|..+++|+.|++++|+++|.++
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 666655 455555566666666666666665555556666666666666666665554
No 363
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=5.7e-20 Score=197.50 Aligned_cols=179 Identities=26% Similarity=0.229 Sum_probs=111.2
Q ss_pred CEEEcccccCcccCCccccccCCCceEEecCCccCCCCCcccc-CCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccC
Q 003855 218 QGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLV-SLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSS 296 (791)
Q Consensus 218 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 296 (791)
+.+++++|.|+ .+|..+. +.++.|+|++|+|++..+..+. ++++|+.|+|++|+|+++.+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45666666666 3444332 2456666666666655555555 666666666666666665556666666666666666
Q ss_pred CcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCccc---CCCCCCcEEEccCCccCC
Q 003855 297 NSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESV---GSLISLESLDLSGNNLSG 373 (791)
Q Consensus 297 N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~~ 373 (791)
|+|+...+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 66665555566666666666666666665556666666666666666666664333333 446666666666666665
Q ss_pred CCchhhhhccc--CceEEccCCCCcccC
Q 003855 374 KIPKSLETLSQ--LKQFNVSHNRLEGEI 399 (791)
Q Consensus 374 ~~~~~~~~l~~--L~~l~l~~N~l~~~~ 399 (791)
..+..+..++. |+.|+|++|++.|.+
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred cCHHHhhhccHhhcceEEecCCCccCCc
Confidence 55556666665 366666666666544
No 364
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=179.32 Aligned_cols=134 Identities=24% Similarity=0.269 Sum_probs=89.6
Q ss_pred eEEecCCccCCCCC-ccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCc
Q 003855 243 GIRLTGNKLSGHIP-PCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRN 321 (791)
Q Consensus 243 ~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N 321 (791)
.|+|++|+|++..+ ..|..+++|++|+|++|+|+++.+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence 34444444433322 23455556666666666665555555666666666666666666666666777777777777777
Q ss_pred ccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCc
Q 003855 322 QLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIP 376 (791)
Q Consensus 322 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 376 (791)
++++..|..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|++.+..+
T Consensus 116 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 116 RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 7776667777777788888888888877677888888888888888888876544
No 365
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=1.3e-20 Score=199.91 Aligned_cols=296 Identities=11% Similarity=0.083 Sum_probs=145.7
Q ss_pred CccCCccccC--CCCCCeeecCCCcccccCCccccC-CCCCcEEeCCCCcCcc-cCCchhhhcCCCccEEEccCCcceec
Q 003855 2 AGQIPTEIGN--LQNLQYLVFAENNLSGLVPPTIFN-ISTMRILTLEGNQLSG-RLPSTVGHLLPNIESLLLAANNLTGI 77 (791)
Q Consensus 2 ~g~lp~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~-~~p~~~~~~l~~L~~L~L~~N~l~~~ 77 (791)
+|+++..+.. +.+|++|.++++ +....-..+.. +++|++|||++|+|.. ..+... ++.+..+.+..|. +
T Consensus 12 ~g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~---I 84 (329)
T 3sb4_A 12 PGTLISMMTEEEANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANF---V 84 (329)
T ss_dssp TTCGGGGSCHHHHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTE---E
T ss_pred CCcHHhhccchhhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---ccccccccccccc---c
Confidence 4667776664 778888888864 22221223334 7788888998888861 011111 1223344444442 3
Q ss_pred CCccCcC--------CCCCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEc
Q 003855 78 IPHSITN--------ATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSF 149 (791)
Q Consensus 78 ~~~~~~~--------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L 149 (791)
.+.+|.+ +++|+.|+|.+ .++.+...+|.++++|+.+++..|.+..++..+ |.++.++..+.+
T Consensus 85 ~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~a--------F~~~~~l~~l~~ 155 (329)
T 3sb4_A 85 PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEA--------LADSVTAIFIPL 155 (329)
T ss_dssp CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTS--------SCTTTCEEEECT
T ss_pred CHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhh--------hcCCCceEEecC
Confidence 3445555 66666666665 555555566666666666666666655555433 555555555544
Q ss_pred cCCCC----cccCChhhhhhhhhhh-hhhccccc-ccccCCccccCCCCCCEEEccCCccccccCccc-cCCCCCCEEEc
Q 003855 150 GSNPL----GGILPPVIGNFSASLQ-KFYAYECK-LKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTM-GRLKRLQGLSL 222 (791)
Q Consensus 150 ~~N~l----~~~~~~~~~~~~~~L~-~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L 222 (791)
+.+.. .......+.... .|+ .+.+.... +.......-....+++.+.+.++-.. .....+ ..+++|+.|+|
T Consensus 156 ~~~~~~~~~~~i~~~~f~~~~-~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L 233 (329)
T 3sb4_A 156 GSSDAYRFKNRWEHFAFIEGE-PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDI 233 (329)
T ss_dssp TCTHHHHTSTTTTTSCEEESC-CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEEC
T ss_pred cchhhhhcccccccccccccc-ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEEC
Confidence 43211 000000000000 000 00000000 00000000012234444444443221 111111 12455666666
Q ss_pred ccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCc-EEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcc
Q 003855 223 RNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLR-ELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLND 301 (791)
Q Consensus 223 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~ 301 (791)
++|+++.+.+..|.++++|+.|+|.+| ++...+.+|.++++|+ .|++.+ .++.+.+..|.++++|+.|+++.|.++.
T Consensus 234 ~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 234 SKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp TTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred CCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 665555555555666666666666555 4445555666666666 666665 5555555666666666666666666665
Q ss_pred cCCcccccCCCCCEEe
Q 003855 302 SLPSNVQKLKVLTVLD 317 (791)
Q Consensus 302 ~~~~~~~~l~~L~~L~ 317 (791)
+.+.+|.++++|+.++
T Consensus 312 I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 312 LGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECTTTTCTTCCCCEEE
T ss_pred cchhhhcCCcchhhhc
Confidence 5566666666666665
No 366
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=6.8e-19 Score=175.97 Aligned_cols=155 Identities=26% Similarity=0.279 Sum_probs=104.9
Q ss_pred CEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCC
Q 003855 218 QGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSN 297 (791)
Q Consensus 218 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 297 (791)
+.++++++.++ .+|..+. ++|+.|+|++|.|++..|..|.++++|++|+|++|+|....+..|..+++|+.|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 33444444444 2332222 44555555555555555555666666666666666666555555666666777777777
Q ss_pred cCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCc
Q 003855 298 SLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIP 376 (791)
Q Consensus 298 ~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 376 (791)
+|++..+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..+..+++|+.|+|++|++.+..+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 776666666777778888888888887 667777888888888888888886666778888999999999999886544
No 367
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=5.1e-21 Score=216.57 Aligned_cols=211 Identities=18% Similarity=0.203 Sum_probs=100.1
Q ss_pred cCCCCCCEEeccCccccccccccccccccccccccccccc-cccCCCc----cccccccccCCCCCCcEEE-ccCCCCcc
Q 003855 83 TNATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNL-TTESSSA----DQWSFLSSLTNCRNLTILS-FGSNPLGG 156 (791)
Q Consensus 83 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~----~~~~~~~~l~~l~~L~~L~-L~~N~l~~ 156 (791)
..+++|+.|+|++|+++ ..|..++++++|+.|++++|.. ...+... .....+..+..+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 45677777777777776 4566777777777777755541 1000000 0000112233333444443 333221
Q ss_pred cCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCcccc
Q 003855 157 ILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLC 236 (791)
Q Consensus 157 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 236 (791)
..|..+.+.+|.+....+ ..|+.|+|++|+|++ +|. |+.+++|++|+|++|+|+ .
T Consensus 423 ----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~------ 477 (567)
T 1dce_A 423 ----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-A------ 477 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-C------
T ss_pred ----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-c------
Confidence 123444444444442211 124455555555543 222 444555555555555554 3
Q ss_pred ccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccC-CcccccCCCCCE
Q 003855 237 HLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSL-PSNVQKLKVLTV 315 (791)
Q Consensus 237 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~-~~~~~~l~~L~~ 315 (791)
+|..|+++++|+.|+|++|+|++ +| .+..+++|+.|+|++|+|++.. |..+..+++|+.
T Consensus 478 ------------------lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 478 ------------------LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp ------------------CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred ------------------cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 44445555555555555555543 23 4455555555555555555443 555555555555
Q ss_pred EecCCcccCCCCCc---chhccccccccc
Q 003855 316 LDLSRNQLSGDIPS---TIGALKDLETLS 341 (791)
Q Consensus 316 L~l~~N~l~~~~~~---~~~~l~~L~~L~ 341 (791)
|+|++|++++..|. .+..+++|+.|+
T Consensus 538 L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 538 LNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred EEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 55555555543322 122355555554
No 368
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=1.6e-21 Score=220.63 Aligned_cols=202 Identities=18% Similarity=0.114 Sum_probs=121.8
Q ss_pred CCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCccccccccccccccccccc
Q 003855 35 NISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSL 114 (791)
Q Consensus 35 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 114 (791)
..++|+.|+|++|+|+ .+|+.+.. +++|++|++++|......|.. +..+.+.+..+..++++++|+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhccc
Confidence 4556666666666665 66666555 456666666554311000000 0001133345555666666666
Q ss_pred cc-cccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCC
Q 003855 115 LS-QVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGL 193 (791)
Q Consensus 115 L~-l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 193 (791)
|+ ++.|.+..+........-+..+. ...|+.|+|++|+|++ +|. |.++++|
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~--------------------------lp~-~~~l~~L 465 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKME-YADVRVLHLAHKDLTV--------------------------LCH-LEQLLLV 465 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSS--------------------------CCC-GGGGTTC
T ss_pred CcchhhcccchhhhhhhhcccccccC-ccCceEEEecCCCCCC--------------------------CcC-ccccccC
Confidence 65 45444332211000000000000 0135566666666553 344 7778899
Q ss_pred CEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCC-CccccCCCCCcEEEcCC
Q 003855 194 TLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHI-PPCLVSLTSLRELHLGS 272 (791)
Q Consensus 194 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~ 272 (791)
+.|+|++|+|+ .+|..|+.+++|++|+|++|+|++ +| .++.+++|+.|+|++|+|++.. |..++.+++|+.|+|++
T Consensus 466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 99999999999 678889999999999999999985 55 7788888888888888887665 77788888888888888
Q ss_pred CcCCCCCC
Q 003855 273 NKLTSSIP 280 (791)
Q Consensus 273 N~l~~~~~ 280 (791)
|++++.+|
T Consensus 543 N~l~~~~~ 550 (567)
T 1dce_A 543 NSLCQEEG 550 (567)
T ss_dssp SGGGGSSS
T ss_pred CcCCCCcc
Confidence 88775543
No 369
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=1.6e-19 Score=184.44 Aligned_cols=168 Identities=23% Similarity=0.321 Sum_probs=91.1
Q ss_pred hhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEec
Q 003855 168 SLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLT 247 (791)
Q Consensus 168 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 247 (791)
.+..+++.+|.+++.. .+..+++|+.|++++|+++.. + .+..+++|++|+|++|+|++..+ +..+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~------- 86 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTK------- 86 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSS-------
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCC-------
Confidence 4566666666666433 355566666666666666532 2 45555666666666666553222 444444
Q ss_pred CCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCC
Q 003855 248 GNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDI 327 (791)
Q Consensus 248 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 327 (791)
|++|+|++|++++. +. +.. ++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 87 -----------------L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~- 143 (263)
T 1xeu_A 87 -----------------LEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI- 143 (263)
T ss_dssp -----------------CCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-
T ss_pred -----------------CCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-
Confidence 44444444444432 11 111 4455555555555432 2355556666666666666532
Q ss_pred CcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCC
Q 003855 328 PSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGK 374 (791)
Q Consensus 328 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 374 (791)
+ .+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 2 455566666666666666643 4566666666666666666644
No 370
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=4.9e-19 Score=180.89 Aligned_cols=170 Identities=19% Similarity=0.289 Sum_probs=128.0
Q ss_pred CCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCE
Q 003855 140 NCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQG 219 (791)
Q Consensus 140 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 219 (791)
.+.++..+++++|.+++.. .+..+ .+|+.|++++|.++. ++ .+..+++|+.|+|++|+|++..+ +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc--chhhc-CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 5677888999999998654 34443 679999999999985 44 78999999999999999997655 999999999
Q ss_pred EEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcC
Q 003855 220 LSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSL 299 (791)
Q Consensus 220 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i 299 (791)
|+|++|+|++ +|.. .. ++|+.|+|++|++++. + .+..+++|+.|+|++|++++. + .+..+++|+.|++++|.+
T Consensus 90 L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 90 LSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCC-cCcc-cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 9999999995 3332 22 7788888888888753 3 477777777777777777754 2 466666777777777776
Q ss_pred cccCCcccccCCCCCEEecCCcccCC
Q 003855 300 NDSLPSNVQKLKVLTVLDLSRNQLSG 325 (791)
Q Consensus 300 ~~~~~~~~~~l~~L~~L~l~~N~l~~ 325 (791)
++. ..+..+++|+.|++++|++.+
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred cch--HHhccCCCCCEEeCCCCcccC
Confidence 654 456666666666666666653
No 371
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=6.4e-19 Score=171.85 Aligned_cols=153 Identities=18% Similarity=0.305 Sum_probs=74.4
Q ss_pred cCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcE
Q 003855 188 GNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRE 267 (791)
Q Consensus 188 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 267 (791)
..+++|+.|++++|.++ .++ .+..+++|++|++++|.++. + ..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~------------------------~~l~~l~~L~~ 92 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--Y------------------------NPISGLSNLER 92 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--C------------------------GGGTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--c------------------------hhhhcCCCCCE
Confidence 34455555566555555 222 35555555555555554431 1 23444555555
Q ss_pred EEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcc-cCCCCCcchhcccccccccccccc
Q 003855 268 LHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQ-LSGDIPSTIGALKDLETLSLARNQ 346 (791)
Q Consensus 268 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 346 (791)
|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|. ++ .+| .+..+++|+.|++++|+
T Consensus 93 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp EEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBC
T ss_pred EEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCC
Confidence 5555555544444445555555555555555544444455555555555555554 33 222 34455555555555555
Q ss_pred CCCCCCcccCCCCCCcEEEccCCccC
Q 003855 347 FQGPIPESVGSLISLESLDLSGNNLS 372 (791)
Q Consensus 347 l~~~~~~~~~~l~~L~~L~l~~N~l~ 372 (791)
+++ ++ .+..+++|+.|++++|++.
T Consensus 171 i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 171 VHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CcC-hH-HhccCCCCCEEEeeCcccC
Confidence 542 22 3444555555555555543
No 372
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=7.2e-19 Score=171.48 Aligned_cols=154 Identities=17% Similarity=0.289 Sum_probs=131.3
Q ss_pred cccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCE
Q 003855 236 CHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTV 315 (791)
Q Consensus 236 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~ 315 (791)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..++.+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 55666777777777777 445 58888999999999998763 357899999999999999999888899999999999
Q ss_pred EecCCcccCCCCCcchhcccccccccccccc-CCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCC
Q 003855 316 LDLSRNQLSGDIPSTIGALKDLETLSLARNQ-FQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNR 394 (791)
Q Consensus 316 L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~ 394 (791)
|++++|++++..+..+..+++|++|++++|+ ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 9999999998788899999999999999998 76 565 68999999999999999996 44 78999999999999999
Q ss_pred Ccc
Q 003855 395 LEG 397 (791)
Q Consensus 395 l~~ 397 (791)
+.+
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 864
No 373
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=2.4e-19 Score=209.41 Aligned_cols=224 Identities=19% Similarity=0.168 Sum_probs=121.7
Q ss_pred CCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEE
Q 003855 142 RNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLS 221 (791)
Q Consensus 142 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 221 (791)
+.++.|+|.+|.+... +.. .|+.+.|+.|.+. .+++..|++. ..++.|..+++|+.|+
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~------~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~ 230 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA------LLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALD 230 (727)
T ss_dssp -----------------------------------------------------------------------CCCCCCEEE
T ss_pred CccceEEeeCCCCCcc-hhh------HhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEE
Confidence 5567777777776642 211 2344444444333 3455666666 6778888999999999
Q ss_pred cccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcc
Q 003855 222 LRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLND 301 (791)
Q Consensus 222 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~ 301 (791)
|++|.|. .+|..+..+++|+.|+|++|.|+ .+|..|+++++|++|+|++|+|+ .+|..|..+++|++|+|++|.|+
T Consensus 231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~- 306 (727)
T 4b8c_D 231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT- 306 (727)
T ss_dssp CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-
T ss_pred CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-
Confidence 9999998 67777778999999999999998 78888999999999999999998 66888999999999999999997
Q ss_pred cCCcccccCCCCCEEecCCcccCCCCCcchhcccc-ccccccccccCCCCCCcccCCCCCCcEEEccCC--------ccC
Q 003855 302 SLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKD-LETLSLARNQFQGPIPESVGSLISLESLDLSGN--------NLS 372 (791)
Q Consensus 302 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N--------~l~ 372 (791)
.+|..|+.+++|+.|+|++|.|++.+|..+..+.. +..|+|++|.+++.+|.. |+.|++++| .+.
T Consensus 307 ~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~ 380 (727)
T 4b8c_D 307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQ 380 (727)
T ss_dssp CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------------------
T ss_pred ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCcc
Confidence 67778999999999999999999888888766533 345889999999887764 556677777 333
Q ss_pred CCCchhhhhcccCceEEccCCCCcc
Q 003855 373 GKIPKSLETLSQLKQFNVSHNRLEG 397 (791)
Q Consensus 373 ~~~~~~~~~l~~L~~l~l~~N~l~~ 397 (791)
+..+..+..+..+....+++|-+.+
T Consensus 381 ~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 381 QSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ---------------------CCCG
T ss_pred ccccchhhcccccceeeeecccccc
Confidence 3334444555555556666665543
No 374
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=7.1e-19 Score=170.61 Aligned_cols=175 Identities=21% Similarity=0.262 Sum_probs=108.7
Q ss_pred ceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCc-cccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCC
Q 003855 242 FGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPS-SLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSR 320 (791)
Q Consensus 242 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~ 320 (791)
+.+++++|.++ .+|..+.. +|++|++++|+|++..+. .|..+++|++|+|++|.|++..|..|..+++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56778888776 45554432 777777777777765553 366777777777777777776677777777777777777
Q ss_pred cccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchh-hhhcccCceEEccCCCCcccC
Q 003855 321 NQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKS-LETLSQLKQFNVSHNRLEGEI 399 (791)
Q Consensus 321 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~l~l~~N~l~~~~ 399 (791)
|+|++..+..|..+++|+.|+|++|+|++..|..+..+++|+.|+|++|++++..+.. +. ..++...+..+...+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCC
Confidence 7777666666777777777777777777666667777777777777777776554421 11 11222233344444433
Q ss_pred CCCCCCcCCccccccCCccccCCC
Q 003855 400 PVKGSFKNFSVESFFGNYALCGPP 423 (791)
Q Consensus 400 ~~~~~~~~l~~~~~~~n~~~c~~~ 423 (791)
|. .+.......+..+...|.++
T Consensus 166 P~--~l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 166 PS--KVRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp ST--TTTTSBGGGSCTTTCCCCCC
T ss_pred Ch--HHcCCChhhCcHhhcCcCCC
Confidence 32 23444444455555555543
No 375
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=3.1e-19 Score=189.30 Aligned_cols=102 Identities=13% Similarity=0.055 Sum_probs=53.9
Q ss_pred CCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhcccccc-ccccccccCCCCCCcccCCCCCCcEE
Q 003855 286 LEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLE-TLSLARNQFQGPIPESVGSLISLESL 364 (791)
Q Consensus 286 l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L 364 (791)
+++|+.|+|++|+++.+.+..|.++++|+.|+|++| ++.+.+..|.++++|+ .+++.+ .++...+.+|.++++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 344555555555554444445555555555555554 4434444555555555 555555 4443444555555555555
Q ss_pred EccCCccCCCCchhhhhcccCceEE
Q 003855 365 DLSGNNLSGKIPKSLETLSQLKQFN 389 (791)
Q Consensus 365 ~l~~N~l~~~~~~~~~~l~~L~~l~ 389 (791)
++++|+++...+.+|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 5555555555555555555555554
No 376
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=6.8e-18 Score=163.63 Aligned_cols=155 Identities=25% Similarity=0.331 Sum_probs=120.8
Q ss_pred cEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCc-ccccCCCCCEEecCCcccCCCCCcchhcccccccccccc
Q 003855 266 RELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPS-NVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLAR 344 (791)
Q Consensus 266 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~ 344 (791)
+.+++++|+++ .+|..+.. +|++|++++|.|++..+. .|..+++|+.|+|++|+|++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888886 45554433 788888888888766654 478888888888888888877788888888888888888
Q ss_pred ccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCCCCCCCcCCccccccCCccccCCC
Q 003855 345 NQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIPVKGSFKNFSVESFFGNYALCGPP 423 (791)
Q Consensus 345 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 423 (791)
|+|++..+..|..+++|+.|+|++|++++..|..|..+++|+.|++++|+++|.++.......++...+.++...|+.|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 8888777777888888888888888888888888888888888888888888877654333344444566666777755
No 377
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.74 E-value=2.3e-18 Score=175.32 Aligned_cols=137 Identities=22% Similarity=0.289 Sum_probs=106.8
Q ss_pred cccccccCCCcceEEEEEEe-cCCcE--EEEEEeehhhh------------------------HHHHHHHHHHHHHHhcc
Q 003855 503 FNECNLLGTGSFGSVYKGTI-SDGTD--VAIKIFNLQLE------------------------RAFRSFDSECEVLRNVR 555 (791)
Q Consensus 503 ~~~~~~ig~G~~g~Vy~~~~-~~~~~--vavK~~~~~~~------------------------~~~~~~~~e~~~l~~l~ 555 (791)
|++.+.||+|+||.||+|.. .+|+. ||||++..... .....+.+|+.++.++.
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999999998 68989 99998753311 11236788999999998
Q ss_pred CCcc--ceeeeeeccCCeeeEEEecCCC-C----CHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCC
Q 003855 556 HRNL--IKILSSCSNPDFKALVLEFMPN-G----SLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDL 628 (791)
Q Consensus 556 h~ni--v~l~~~~~~~~~~~lv~e~~~~-g----~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dl 628 (791)
|+++ ..++++ ...++||||+.+ | +|.++... .++..+..++.|++.|+.|||. +.+|+||||
T Consensus 129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~----~~~~~~~~i~~qi~~~l~~lH~---~~givHrDl 197 (258)
T 1zth_A 129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE----LKELDVEGIFNDVVENVKRLYQ---EAELVHADL 197 (258)
T ss_dssp HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG----GGGSCHHHHHHHHHHHHHHHHH---TSCEECSSC
T ss_pred hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc----cChHHHHHHHHHHHHHHHHHHH---HCCEEeCCC
Confidence 8864 333332 356899999942 3 77776543 2234567899999999999993 357999999
Q ss_pred CCCCeEeCCCCcEEEeeecccccc
Q 003855 629 KPTNILLDENMAAHVSDFGISKLL 652 (791)
Q Consensus 629 k~~Nill~~~~~~kl~Dfgla~~~ 652 (791)
||+|||+++ .++|+|||+|...
T Consensus 198 kp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 198 SEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp STTSEEESS--SEEECCCTTCEET
T ss_pred CHHHEEEcC--cEEEEECcccccC
Confidence 999999998 9999999999764
No 378
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.74 E-value=8.1e-17 Score=174.19 Aligned_cols=264 Identities=10% Similarity=0.105 Sum_probs=128.0
Q ss_pred CCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEe
Q 003855 13 QNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALD 92 (791)
Q Consensus 13 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 92 (791)
..++.+.+. +.++.+...+|.+. +|+.+.|.+| ++ .++...|.. .+|+.+.|.+ .++.+.+.+|.++++|+.++
T Consensus 113 ~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 445555554 23444555555552 4555555544 44 444444443 3455555553 44445555555555555555
Q ss_pred ccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhh
Q 003855 93 LGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKF 172 (791)
Q Consensus 93 L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L 172 (791)
|++|+++.+....|.. .+|+.+.+. +.++.++..+ |.++++|+.+++
T Consensus 187 l~~n~l~~I~~~aF~~-~~L~~l~lp-~~l~~I~~~a--------F~~~~~L~~l~l----------------------- 233 (401)
T 4fdw_A 187 LSKTKITKLPASTFVY-AGIEEVLLP-VTLKEIGSQA--------FLKTSQLKTIEI----------------------- 233 (401)
T ss_dssp CTTSCCSEECTTTTTT-CCCSEEECC-TTCCEECTTT--------TTTCTTCCCEEC-----------------------
T ss_pred cCCCcceEechhhEee-cccCEEEeC-CchheehhhH--------hhCCCCCCEEec-----------------------
Confidence 5555555555555542 444444444 2244433332 444444444444
Q ss_pred hcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccC
Q 003855 173 YAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLS 252 (791)
Q Consensus 173 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 252 (791)
..| ++.+...+|.+ .+|+.+.| .+.++.+....|.++++|+.+++.+|.+.
T Consensus 234 --------------------------~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 234 --------------------------PEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp --------------------------CTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred --------------------------CCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCcccc
Confidence 432 33333344443 34444444 23333333444444444444444444332
Q ss_pred -----CCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCC
Q 003855 253 -----GHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDI 327 (791)
Q Consensus 253 -----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 327 (791)
...+.+|.++++|+.+.|. +.++.+....|.++.+|+.+.|..| ++.+...+|.++ +|+.|++++|.+....
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred CCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 2334455555555555555 2354444555555555555555433 444445555555 5666666666555444
Q ss_pred Ccchhccc-cccccccccccC
Q 003855 328 PSTIGALK-DLETLSLARNQF 347 (791)
Q Consensus 328 ~~~~~~l~-~L~~L~L~~N~l 347 (791)
+..|.+++ .++.|++..+.+
T Consensus 362 ~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 362 EKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CSSCCCSCTTCCEEEECGGGH
T ss_pred cccccCCCCCccEEEeCHHHH
Confidence 44555553 455555555543
No 379
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=3.2e-18 Score=199.92 Aligned_cols=155 Identities=21% Similarity=0.286 Sum_probs=126.2
Q ss_pred cCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCcccccccccccc
Q 003855 28 LVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFG 107 (791)
Q Consensus 28 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 107 (791)
..|+.|..+.+|+.|+|++|.+. .+|..++. +++|++|+|++|.|+ .+|..|+++++|++|+|++|+|+ .+|..|.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 55888999999999999999998 99999886 899999999999999 78899999999999999999999 5588899
Q ss_pred ccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccc
Q 003855 108 NLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEI 187 (791)
Q Consensus 108 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 187 (791)
+|++|+.|+|++|.|+.++ ..|..+++|+.|+|++|.|++.+|..+......+..++|.+|.+++.+|..
T Consensus 291 ~l~~L~~L~L~~N~l~~lp---------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~- 360 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLP---------WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE- 360 (727)
T ss_dssp GGTTCSEEECCSSCCCCCC---------SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred CCCCCCEEECCCCCCCccC---------hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc-
Confidence 9999999999999998654 458999999999999999999999988877666677889999999877754
Q ss_pred cCCCCCCEEEccCC
Q 003855 188 GNLSGLTLLSLHSN 201 (791)
Q Consensus 188 ~~l~~L~~L~L~~N 201 (791)
|..|+++.|
T Consensus 361 -----l~~l~l~~n 369 (727)
T 4b8c_D 361 -----RRFIEINTD 369 (727)
T ss_dssp --------------
T ss_pred -----cceeEeecc
Confidence 556677776
No 380
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.72 E-value=9.9e-17 Score=173.51 Aligned_cols=267 Identities=10% Similarity=0.096 Sum_probs=218.7
Q ss_pred cCCCccEEEccCCcceecCCccCcCCCCCCEEeccCccccccccccccccccccccccccccccccCCCccccccccccC
Q 003855 60 LLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLT 139 (791)
Q Consensus 60 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~ 139 (791)
....++.+.+.+ .++.+...+|.+. +|+.++|..| ++.+...+|.+ .+|+.+.+.. .++.++..+ |.
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~a--------F~ 177 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDI--------FY 177 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSST--------TT
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHH--------hh
Confidence 346777777765 4666777888875 7888888776 77788888888 4688888875 677766555 88
Q ss_pred CCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCE
Q 003855 140 NCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQG 219 (791)
Q Consensus 140 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 219 (791)
+|++|+.++++.|+++.+ ...+|. ..+|+.+.|.++ ++.+...+|.++++|+.
T Consensus 178 ~c~~L~~l~l~~n~l~~I-------------------------~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~ 230 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKL-------------------------PASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKT 230 (401)
T ss_dssp TCTTCCEEECTTSCCSEE-------------------------CTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred CcccCCeeecCCCcceEe-------------------------chhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCE
Confidence 888999999888887743 233454 578999999855 88789999999999999
Q ss_pred EEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCC-----CCCCccccCCCCCCeEEc
Q 003855 220 LSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLT-----SSIPSSLWSLEYILDINL 294 (791)
Q Consensus 220 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~l 294 (791)
+++..| ++.+....|.+ .+|+.+.|. +.++.....+|.++++|+.+++.+|.+. .+.+..|.++++|+.+.|
T Consensus 231 l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 231 IEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp EECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred EecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 999975 66677788888 899999994 5576677899999999999999998875 467789999999999999
Q ss_pred cCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCC-CCcEEEccCCccC
Q 003855 295 SSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLI-SLESLDLSGNNLS 372 (791)
Q Consensus 295 ~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~ 372 (791)
. +.++.+...+|.++++|+.++|..| ++...+..|.++ +|+.+++++|.+....+..|.+++ +++.|++..+.+.
T Consensus 308 ~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 308 P-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp C-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred C-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 9 5588788889999999999999766 666778899999 999999999999877778888884 7899999887764
No 381
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=160.02 Aligned_cols=131 Identities=24% Similarity=0.349 Sum_probs=86.1
Q ss_pred cEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccc
Q 003855 266 RELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARN 345 (791)
Q Consensus 266 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N 345 (791)
+.+++++|.++ .+|..+. ++|++|++++|.|+ .+|..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555554 2333222 35666666666665 44566666667777777777776665666777777777777777
Q ss_pred cCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCC
Q 003855 346 QFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIP 400 (791)
Q Consensus 346 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~ 400 (791)
+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|++.|...
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 7776666677777777777777777776666667777777777777777776554
No 382
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.2e-16 Score=151.50 Aligned_cols=135 Identities=24% Similarity=0.249 Sum_probs=102.7
Q ss_pred CCCcEEEcCCCcCC-CCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccc
Q 003855 263 TSLRELHLGSNKLT-SSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLS 341 (791)
Q Consensus 263 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 341 (791)
++|++|++++|+++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56777777777776 45666677777777777777777654 6677778888888888888766777777788888888
Q ss_pred cccccCCCCC-CcccCCCCCCcEEEccCCccCCCCc---hhhhhcccCceEEccCCCCcccC
Q 003855 342 LARNQFQGPI-PESVGSLISLESLDLSGNNLSGKIP---KSLETLSQLKQFNVSHNRLEGEI 399 (791)
Q Consensus 342 L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~l~l~~N~l~~~~ 399 (791)
+++|++++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+...+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 8888887432 2678888888888888888886655 57888888888888888876544
No 383
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.68 E-value=1.2e-15 Score=165.91 Aligned_cols=335 Identities=9% Similarity=0.064 Sum_probs=195.3
Q ss_pred cccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCcccccccc
Q 003855 24 NLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFAGHIL 103 (791)
Q Consensus 24 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 103 (791)
+++.+...+|.++.+|+.+.|.. .++ .|++..|...++|+.++|.++ ++.+...+|.++++|+.+.+..+ +..+..
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-Ccc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence 35556667788888888888864 366 777777776778888888654 66566777888888887776644 455666
Q ss_pred ccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccC
Q 003855 104 NTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNI 183 (791)
Q Consensus 104 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 183 (791)
.+|.+...+..... +.+..+.. .+|.++++|+.+.+..+. ..+ ++..+....+|+.+.+..+ +..+.
T Consensus 134 ~aF~~~~~~~~~~~--~~~~~i~~--------~aF~~c~~L~~i~l~~~~-~~I-~~~~F~~c~~L~~i~l~~~-~~~I~ 200 (394)
T 4fs7_A 134 EAFKGCDFKEITIP--EGVTVIGD--------EAFATCESLEYVSLPDSM-ETL-HNGLFSGCGKLKSIKLPRN-LKIIR 200 (394)
T ss_dssp TTTTTCCCSEEECC--TTCCEECT--------TTTTTCTTCCEEECCTTC-CEE-CTTTTTTCTTCCBCCCCTT-CCEEC
T ss_pred eeeecccccccccC--ccccccch--------hhhcccCCCcEEecCCcc-cee-ccccccCCCCceEEEcCCC-ceEeC
Confidence 67776654433322 22222322 237888888888887553 322 2222222234555555544 34344
Q ss_pred CccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCC
Q 003855 184 PQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLT 263 (791)
Q Consensus 184 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 263 (791)
..+|.++..|+.+.+..+... + .+.+....+|+.+.+..+ ++.+....|..+..|+.+.+..+... .....|..+.
T Consensus 201 ~~~F~~~~~L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~ 276 (394)
T 4fs7_A 201 DYCFAECILLENMEFPNSLYY-L-GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCS 276 (394)
T ss_dssp TTTTTTCTTCCBCCCCTTCCE-E-CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCT
T ss_pred chhhccccccceeecCCCceE-e-ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eecccccccc
Confidence 555666666666666655443 2 223333456666666533 23244555666666666666665443 4455566666
Q ss_pred CCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccc
Q 003855 264 SLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLA 343 (791)
Q Consensus 264 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~ 343 (791)
.|+.+....+.+. ...|..+.+|+.+.+..+ ++.+...+|.++.+|+.++|..+ ++.....+|.++.+|+.+++.
T Consensus 277 ~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 277 GLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCC
T ss_pred ccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEEC
Confidence 6666666555432 235566666666666544 44455556666666666666543 444445566666666666666
Q ss_pred cccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCce
Q 003855 344 RNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQ 387 (791)
Q Consensus 344 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 387 (791)
.| ++.....+|.++.+|+.+++..+ ++ .+...|.++++|+.
T Consensus 352 ~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 352 LS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred cc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 55 54344556666666666666543 22 23345555655554
No 384
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.4e-16 Score=150.83 Aligned_cols=84 Identities=27% Similarity=0.301 Sum_probs=45.0
Q ss_pred CCCCEEEccCCccc-cccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEE
Q 003855 191 SGLTLLSLHSNDLN-GTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELH 269 (791)
Q Consensus 191 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 269 (791)
++|+.|++++|+++ +.+|..+..+++|++|+|++|.|++. ..+..+++|+.|+|++|++++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 34455555556666666666665533 4445555555555555555544444444455555555
Q ss_pred cCCCcCC
Q 003855 270 LGSNKLT 276 (791)
Q Consensus 270 L~~N~l~ 276 (791)
|++|+++
T Consensus 102 Ls~N~l~ 108 (168)
T 2ell_A 102 LSGNKLK 108 (168)
T ss_dssp CBSSSCC
T ss_pred ccCCccC
Confidence 5555544
No 385
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=1.5e-15 Score=165.05 Aligned_cols=328 Identities=11% Similarity=0.058 Sum_probs=246.0
Q ss_pred cccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCC
Q 003855 8 EIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATK 87 (791)
Q Consensus 8 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 87 (791)
+|.++++|+.+.|.. .++.+...+|.++++|+.++|.++ ++ .++...|...++|+.+.+..+ +..+...+|.+...
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 467899999999984 588888899999999999999865 76 788888888889999888765 55477778877765
Q ss_pred CCEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhh
Q 003855 88 LVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSA 167 (791)
Q Consensus 88 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 167 (791)
+...... .+..+...+|.++.+|+.+.+..+ +..++..+ |.++.+|+.+.+..| ++.+....+.. ..
T Consensus 142 ~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~--------F~~c~~L~~i~l~~~-~~~I~~~~F~~-~~ 208 (394)
T 4fs7_A 142 KEITIPE--GVTVIGDEAFATCESLEYVSLPDS-METLHNGL--------FSGCGKLKSIKLPRN-LKIIRDYCFAE-CI 208 (394)
T ss_dssp SEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTT--------TTTCTTCCBCCCCTT-CCEECTTTTTT-CT
T ss_pred cccccCc--cccccchhhhcccCCCcEEecCCc-cceecccc--------ccCCCCceEEEcCCC-ceEeCchhhcc-cc
Confidence 4443333 233456677888888888887644 34454443 788888888888766 44343333333 34
Q ss_pred hhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEec
Q 003855 168 SLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLT 247 (791)
Q Consensus 168 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 247 (791)
.|+.+.+..+... +.+.+....+|+.+.+..+ ++.+....|..+.+|+.+.+..+... .....|..+..++.+...
T Consensus 209 ~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 209 LLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYG 284 (394)
T ss_dssp TCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEEC
T ss_pred ccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccC
Confidence 5666666555433 2334445678999988755 44477788899999999999887655 777888999999999888
Q ss_pred CCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCC
Q 003855 248 GNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDI 327 (791)
Q Consensus 248 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 327 (791)
.+.+. ...|.++.+|+.+.+..+ ++.+....|.++.+|+.++|..+ ++.+...+|.++.+|+.+++..| ++...
T Consensus 285 ~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 285 SVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp SSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred ceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 77654 356888999999999765 66677788999999999999755 77677789999999999999887 76677
Q ss_pred CcchhccccccccccccccCCCCCCcccCCCCCCcEE
Q 003855 328 PSTIGALKDLETLSLARNQFQGPIPESVGSLISLESL 364 (791)
Q Consensus 328 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 364 (791)
..+|.++.+|+.+++..+ ++ .+...|.++.+|+.+
T Consensus 359 ~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 788999999999999766 44 345678888888764
No 386
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=2.4e-16 Score=146.01 Aligned_cols=128 Identities=23% Similarity=0.274 Sum_probs=86.1
Q ss_pred CCCcEEEcCCCcCC-CCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccc
Q 003855 263 TSLRELHLGSNKLT-SSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLS 341 (791)
Q Consensus 263 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 341 (791)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45566666666665 44555555666666666666666544 5566667777777777777755666666677777777
Q ss_pred cccccCCCC-CCcccCCCCCCcEEEccCCccCCCCc---hhhhhcccCceEEccC
Q 003855 342 LARNQFQGP-IPESVGSLISLESLDLSGNNLSGKIP---KSLETLSQLKQFNVSH 392 (791)
Q Consensus 342 L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~l~l~~ 392 (791)
+++|++++. .+..++.+++|+.|++++|++++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777777742 23667778888888888888876655 5677888888887763
No 387
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=6.6e-16 Score=147.62 Aligned_cols=113 Identities=26% Similarity=0.280 Sum_probs=57.4
Q ss_pred CCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEcc
Q 003855 288 YILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLS 367 (791)
Q Consensus 288 ~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 367 (791)
+|+.|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+|++..+..+..+++|+.|+|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 34444444444443333344444455555555555543333444555555555555555554444445555555555555
Q ss_pred CCccCCCCchhhhhcccCceEEccCCCCcccCC
Q 003855 368 GNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIP 400 (791)
Q Consensus 368 ~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~ 400 (791)
+|++++..+..+..+++|+.|++++|+++|.+|
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 555554444445555556666666665555444
No 388
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=147.00 Aligned_cols=127 Identities=21% Similarity=0.287 Sum_probs=89.1
Q ss_pred CEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCCC
Q 003855 194 TLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSN 273 (791)
Q Consensus 194 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 273 (791)
+.+++++|+++. +|..+. ++|++|+|++|+|+ .+|..|..+++|+.|+|++|.|++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 567777777773 444332 57777777777777 55667777777777777777777666667777777777777777
Q ss_pred cCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccC
Q 003855 274 KLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLS 324 (791)
Q Consensus 274 ~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~ 324 (791)
+|++..+..|..+++|+.|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666666777777777777777776555556666777777777777665
No 389
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=3.3e-16 Score=145.07 Aligned_cols=126 Identities=24% Similarity=0.251 Sum_probs=71.7
Q ss_pred CCCCEEEccCCccc-cccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEE
Q 003855 191 SGLTLLSLHSNDLN-GTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELH 269 (791)
Q Consensus 191 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 269 (791)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56777777777776 55566666777777777777777643 4555666666666666666654555555566666666
Q ss_pred cCCCcCCCC-CCccccCCCCCCeEEccCCcCcccCC---cccccCCCCCEEec
Q 003855 270 LGSNKLTSS-IPSSLWSLEYILDINLSSNSLNDSLP---SNVQKLKVLTVLDL 318 (791)
Q Consensus 270 L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~i~~~~~---~~~~~l~~L~~L~l 318 (791)
+++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 666665532 12344444445555555444443332 23444444444444
No 390
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.63 E-value=1.5e-16 Score=167.58 Aligned_cols=139 Identities=14% Similarity=0.140 Sum_probs=97.6
Q ss_pred cccccccCCCcceEEEEEEecCCcEEEEEEeehhh--------------hHHHHHHHHHHHHHHhccCCccceeeeeecc
Q 003855 503 FNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQL--------------ERAFRSFDSECEVLRNVRHRNLIKILSSCSN 568 (791)
Q Consensus 503 ~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--------------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~ 568 (791)
|++.+.||+|+||.||+|...+|+.||||+++... .........+.++.....|+|+.+++.....
T Consensus 97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~ 176 (397)
T 4gyi_A 97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP 176 (397)
T ss_dssp SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999899999999875321 0011122222333333334444444322211
Q ss_pred ------CCeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCC---
Q 003855 569 ------PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENM--- 639 (791)
Q Consensus 569 ------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~--- 639 (791)
....++||||++|++|.++... .....++.|++.+|.||| ..+||||||||.|||+++++
T Consensus 177 vp~p~~~~~~~LVME~i~G~~L~~l~~~-------~~~~~l~~qll~~l~~lH----~~gIVHrDLKp~NILl~~dgd~~ 245 (397)
T 4gyi_A 177 VPEPIAQSRHTIVMSLVDALPMRQVSSV-------PDPASLYADLIALILRLA----KHGLIHGDFNEFNILIREEKDAE 245 (397)
T ss_dssp CCCEEEEETTEEEEECCSCEEGGGCCCC-------SCHHHHHHHHHHHHHHHH----HTTEECSCCSTTSEEEEEEECSS
T ss_pred CCeeeeccCceEEEEecCCccHhhhccc-------HHHHHHHHHHHHHHHHHH----HCCCcCCCCCHHHEEEeCCCCcc
Confidence 1123699999999888654321 124568899999999999 57899999999999998876
Q ss_pred -------cEEEeeecccccc
Q 003855 640 -------AAHVSDFGISKLL 652 (791)
Q Consensus 640 -------~~kl~Dfgla~~~ 652 (791)
.+.|+||+-+...
T Consensus 246 d~~~~~~~~~iID~~Q~V~~ 265 (397)
T 4gyi_A 246 DPSSITLTPIIIXFPQMVSM 265 (397)
T ss_dssp CTTSEEEEEEECCCTTCEET
T ss_pred cccccccceEEEEeCCcccC
Confidence 3899999987654
No 391
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=2e-15 Score=144.31 Aligned_cols=132 Identities=27% Similarity=0.296 Sum_probs=100.0
Q ss_pred ceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCc
Q 003855 242 FGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRN 321 (791)
Q Consensus 242 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N 321 (791)
+.+++++|+++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45566666665 333322 256777777777777666666777777888888888877666666788888888888888
Q ss_pred ccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCc
Q 003855 322 QLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIP 376 (791)
Q Consensus 322 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 376 (791)
++++..+..|..+++|+.|++++|++++..+..+..+++|+.|+|++|++.+..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8887666677888899999999999986666667889999999999999987655
No 392
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=1.7e-15 Score=144.61 Aligned_cols=133 Identities=21% Similarity=0.223 Sum_probs=91.9
Q ss_pred ccCCCCCcEEEcCCCcCCCCCCccccCCC-CCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccc
Q 003855 259 LVSLTSLRELHLGSNKLTSSIPSSLWSLE-YILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDL 337 (791)
Q Consensus 259 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 337 (791)
+.++++|++|++++|+++.. +. +..+. +|++|++++|.|++. ..+..+++|+.|++++|++++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 45556666666666666633 33 33333 677777777777654 456777777777777777775444555777788
Q ss_pred cccccccccCCCCCCc--ccCCCCCCcEEEccCCccCCCCch----hhhhcccCceEEccCCCCcc
Q 003855 338 ETLSLARNQFQGPIPE--SVGSLISLESLDLSGNNLSGKIPK----SLETLSQLKQFNVSHNRLEG 397 (791)
Q Consensus 338 ~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~l~l~~N~l~~ 397 (791)
+.|++++|+|+ .+|. .+..+++|+.|++++|+++ .+|. .+..+++|+.||+++|.+..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 88888888776 4554 6777888888888888887 4454 37888888888888887654
No 393
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=3.2e-17 Score=159.91 Aligned_cols=134 Identities=24% Similarity=0.313 Sum_probs=99.7
Q ss_pred ccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhcccc
Q 003855 257 PCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKD 336 (791)
Q Consensus 257 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 336 (791)
..+..+++|++|+|++|++++ +| .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 367777777777777777775 44 6777777888888888776 456667777888888888888874 44 5778888
Q ss_pred ccccccccccCCCCCC-cccCCCCCCcEEEccCCccCCCCch----------hhhhcccCceEEccCCCCcc
Q 003855 337 LETLSLARNQFQGPIP-ESVGSLISLESLDLSGNNLSGKIPK----------SLETLSQLKQFNVSHNRLEG 397 (791)
Q Consensus 337 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~----------~~~~l~~L~~l~l~~N~l~~ 397 (791)
|+.|++++|++++..+ ..+..+++|+.|++++|++++..|. .+..+++|+.|| +|+++.
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 8888888888874222 3678888889999998888766554 377888888876 666553
No 394
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=3.4e-15 Score=142.42 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=53.7
Q ss_pred CCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCc--chhccccccccc
Q 003855 264 SLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPS--TIGALKDLETLS 341 (791)
Q Consensus 264 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--~~~~l~~L~~L~ 341 (791)
+|+.|++++|+|++. ..+..+++|++|++++|.|++..+..+..+++|+.|++++|+++ .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 444444444444432 34444445555555555554433333455555555555555554 3333 455555555555
Q ss_pred cccccCCCCCCcc----cCCCCCCcEEEccCCccC
Q 003855 342 LARNQFQGPIPES----VGSLISLESLDLSGNNLS 372 (791)
Q Consensus 342 L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~ 372 (791)
+++|+++ .+|.. +..+++|+.||+++|.+.
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 5555555 33432 555666666666666554
No 395
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=7.1e-17 Score=157.42 Aligned_cols=129 Identities=24% Similarity=0.297 Sum_probs=60.0
Q ss_pred CCCCEEEccCCccccccCc------cccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCccccCCCC
Q 003855 191 SGLTLLSLHSNDLNGTISP------TMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTS 264 (791)
Q Consensus 191 ~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 264 (791)
..++.++++.|.+.+..|. .|..+++|++|+|++|+|++ +| .+..+++|+.|++++|.++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3444444454444444333 45555555555555555553 33 4455555555555555554 33444444445
Q ss_pred CcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCC-cccccCCCCCEEecCCcccC
Q 003855 265 LRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLP-SNVQKLKVLTVLDLSRNQLS 324 (791)
Q Consensus 265 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~-~~~~~l~~L~~L~l~~N~l~ 324 (791)
|++|++++|++++ +| .+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 5555555555543 12 34444444444444444442211 23444444444444444444
No 396
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.50 E-value=8.8e-13 Score=143.17 Aligned_cols=322 Identities=10% Similarity=0.134 Sum_probs=184.6
Q ss_pred ccccCCccccCCC-CCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCc---ceecCCccCcCCCCCCEEeccCccccc
Q 003855 25 LSGLVPPTIFNIS-TMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANN---LTGIIPHSITNATKLVALDLGFNSFAG 100 (791)
Q Consensus 25 l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~~N~i~~ 100 (791)
++.+...+|.+.. .|+.+.+-.+ ++ .|.+..|....+|+.+.++.|. ++.+...+|.++.+|+.+.+..+ ++.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 4455556666653 4666666543 55 5666666556677777766553 55555666777777776666544 444
Q ss_pred cccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhccccccc
Q 003855 101 HILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLK 180 (791)
Q Consensus 101 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 180 (791)
+....|.+..+|+.+.+.. .+..+...+ |..+.+|+.+.+..+ ++.+..
T Consensus 128 I~~~aF~~c~~L~~i~lp~-~~~~I~~~~--------F~~c~~L~~i~~~~~-~~~I~~--------------------- 176 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPE-GVTSVADGM--------FSYCYSLHTVTLPDS-VTAIEE--------------------- 176 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT-TCCEECTTT--------TTTCTTCCEEECCTT-CCEECT---------------------
T ss_pred ehhhhhhhhcccccccccc-eeeeecccc--------eecccccccccccce-eeEecc---------------------
Confidence 6666677777777766643 334443333 667777777777544 332211
Q ss_pred ccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCcc--------------ccccCCCceEEe
Q 003855 181 GNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYD--------------LCHLKLMFGIRL 246 (791)
Q Consensus 181 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--------------~~~l~~L~~L~L 246 (791)
.+|.+ .+|+.+.+..+-.. +...+|..+.++.......+.... .... +.....+..+.+
T Consensus 177 ----~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 249 (394)
T 4gt6_A 177 ----RAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKI 249 (394)
T ss_dssp ----TTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEEC
T ss_pred ----ccccc-cceeEEEECCcccc-cccchhhhccccceeccccccccc-ccceeecccccccccccccccccccceEEc
Confidence 22222 33444444433322 344444455555544444333221 1111 111223333333
Q ss_pred cCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCC
Q 003855 247 TGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGD 326 (791)
Q Consensus 247 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~ 326 (791)
.. .++.....+|.++++|+.+.+.++... +....|.++..|+.+.+. +.++.+....|.++.+|+.++|..+ ++.+
T Consensus 250 p~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I 325 (394)
T 4gt6_A 250 PN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQI 325 (394)
T ss_dssp CT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred CC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEe
Confidence 32 233344566777788888888665543 566677788888888885 4455566677888888888888765 5545
Q ss_pred CCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCC
Q 003855 327 IPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRL 395 (791)
Q Consensus 327 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l 395 (791)
...+|.++.+|+.+.+..+ ++.....+|.++.+|+.+++.+|.... ..+....+|+.+.+..|.+
T Consensus 326 ~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 326 LDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred hHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 6677888888888888655 664556788888888888888876542 4566677788887776654
No 397
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=5.4e-14 Score=133.03 Aligned_cols=90 Identities=23% Similarity=0.257 Sum_probs=46.7
Q ss_pred CCCCEEecCCcccCCCCCcchhccccccccccccccCCCCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEc
Q 003855 311 KVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNV 390 (791)
Q Consensus 311 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l 390 (791)
++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34444555555554444444555555555555555555444444455555555555555555444445555555555555
Q ss_pred cCCCCcccCC
Q 003855 391 SHNRLEGEIP 400 (791)
Q Consensus 391 ~~N~l~~~~~ 400 (791)
++|++++.++
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 5555555443
No 398
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.50 E-value=1.4e-12 Score=141.53 Aligned_cols=303 Identities=11% Similarity=0.097 Sum_probs=222.7
Q ss_pred CcccCCchhhhcC-CCccEEEccCCcceecCCccCcCCCCCCEEeccCcc---ccccccccccccccccccccccccccc
Q 003855 49 LSGRLPSTVGHLL-PNIESLLLAANNLTGIIPHSITNATKLVALDLGFNS---FAGHILNTFGNLRHLSLLSQVMNNLTT 124 (791)
Q Consensus 49 l~~~~p~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~---i~~~~~~~~~~l~~L~~L~l~~n~l~~ 124 (791)
++ .|++..|... ..|+.+.+..+ ++.+...+|.++++|+.+.++.|. ++.+...+|.+..+|+.+.+..+ ++.
T Consensus 51 Vt-~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 51 VS-KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EE-EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred ee-EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 44 6667666544 35899999754 777888999999999999998874 77778889999999998877654 555
Q ss_pred cCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccc
Q 003855 125 ESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLN 204 (791)
Q Consensus 125 ~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 204 (791)
++..+ |.++.+|+.+.+..+-.. +...+|.++.+|+.+.+.++ ++
T Consensus 128 I~~~a--------F~~c~~L~~i~lp~~~~~--------------------------I~~~~F~~c~~L~~i~~~~~-~~ 172 (394)
T 4gt6_A 128 IDSEA--------FHHCEELDTVTIPEGVTS--------------------------VADGMFSYCYSLHTVTLPDS-VT 172 (394)
T ss_dssp ECTTT--------TTTCTTCCEEECCTTCCE--------------------------ECTTTTTTCTTCCEEECCTT-CC
T ss_pred ehhhh--------hhhhcccccccccceeee--------------------------ecccceecccccccccccce-ee
Confidence 55444 888999999988644221 23456788899999999866 55
Q ss_pred cccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecCCccCCCCCcc-------------ccCCCCCcEEEcC
Q 003855 205 GTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPC-------------LVSLTSLRELHLG 271 (791)
Q Consensus 205 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-------------~~~l~~L~~L~L~ 271 (791)
.+...+|.. .+|+.+.+..+-.. .....|..+.++.......+......... +.....+..+.+.
T Consensus 173 ~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 250 (394)
T 4gt6_A 173 AIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP 250 (394)
T ss_dssp EECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC
T ss_pred Eeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcC
Confidence 577777764 67999999766544 66778888888888887766554221111 1122334455543
Q ss_pred CCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccccCCCCC
Q 003855 272 SNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARNQFQGPI 351 (791)
Q Consensus 272 ~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 351 (791)
+.++.+....|.++..|+.+.+..+..+ +....|.++++|+.+.+. +.++......|.++.+|+.+++..+ ++...
T Consensus 251 -~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~ 326 (394)
T 4gt6_A 251 -NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQIL 326 (394)
T ss_dssp -TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred -CcceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEeh
Confidence 2344455678888999999999776553 667788999999999996 4565566778999999999999865 66456
Q ss_pred CcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCc
Q 003855 352 PESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLE 396 (791)
Q Consensus 352 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~ 396 (791)
..+|.++.+|+.+.+..+ ++.....+|.++++|+.+++.+|...
T Consensus 327 ~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence 678999999999999654 77666788999999999999988643
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=1.2e-13 Score=130.97 Aligned_cols=104 Identities=20% Similarity=0.226 Sum_probs=48.1
Q ss_pred cEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccc
Q 003855 266 RELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARN 345 (791)
Q Consensus 266 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N 345 (791)
+.+++++|+++ .+|..+. ++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45566666664 3333332 44555555555555444444445555555555555554333333444444444444444
Q ss_pred cCCCCCCcccCCCCCCcEEEccCCccC
Q 003855 346 QFQGPIPESVGSLISLESLDLSGNNLS 372 (791)
Q Consensus 346 ~l~~~~~~~~~~l~~L~~L~l~~N~l~ 372 (791)
+|++..+..|..+++|+.|+|++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 444333333444444444444444444
No 400
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=2.4e-13 Score=128.46 Aligned_cols=108 Identities=25% Similarity=0.255 Sum_probs=82.3
Q ss_pred CcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCCcchhcccccccccccc
Q 003855 265 LRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLAR 344 (791)
Q Consensus 265 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~ 344 (791)
.+.|++++|+++. +|..+ .++|+.|+|++|.|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4566677776663 44433 26677777777777777777788888888888888888866666778888888888888
Q ss_pred ccCCCCCCcccCCCCCCcEEEccCCccCCCC
Q 003855 345 NQFQGPIPESVGSLISLESLDLSGNNLSGKI 375 (791)
Q Consensus 345 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 375 (791)
|+|++..+..|..+++|+.|+|++|++++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 8888666667888999999999999998654
No 401
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.46 E-value=1.3e-15 Score=163.19 Aligned_cols=177 Identities=19% Similarity=0.171 Sum_probs=93.2
Q ss_pred CCCcEEeCCCCcCcccCCchhhhc----CCCccEEEccCCcceecCCccC-cCCCCCCEEeccCcccccccccccc----
Q 003855 37 STMRILTLEGNQLSGRLPSTVGHL----LPNIESLLLAANNLTGIIPHSI-TNATKLVALDLGFNSFAGHILNTFG---- 107 (791)
Q Consensus 37 ~~L~~L~L~~n~l~~~~p~~~~~~----l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~~~---- 107 (791)
++|+.|+|++|.|+..-...+... .++|++|+|++|.|+......+ ..+++|++|+|++|.++......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 455566666666542222222221 1356666666665543222222 2344566666666666544433332
Q ss_pred -ccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhhhhhhhcccccccccCCcc
Q 003855 108 -NLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQE 186 (791)
Q Consensus 108 -~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 186 (791)
..++|+.|++++|.|+..... .+...+..+++|++|+|++|.|++..... ++..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~----~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~---------------------L~~~ 206 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVA----VLMEGLAGNTSVTHLSLLHTGLGDEGLEL---------------------LAAQ 206 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHH----HHHHHHHTCSSCCEEECTTSSCHHHHHHH---------------------HHHH
T ss_pred hcCCccceeeCCCCCCChHHHH----HHHHHHhcCCCcCEEeCCCCCCCcHHHHH---------------------HHHH
Confidence 235566666666666543211 12334566777888888888776432111 1233
Q ss_pred ccCCCCCCEEEccCCcccccc----CccccCCCCCCEEEcccccCcccCCcccccc
Q 003855 187 IGNLSGLTLLSLHSNDLNGTI----SPTMGRLKRLQGLSLRNNNLEGSIPYDLCHL 238 (791)
Q Consensus 187 ~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 238 (791)
+...++|+.|+|++|.|+... +..+...++|++|+|++|.|++.....+..+
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 445567777777777776432 2334455777777777777775544444433
No 402
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=3.6e-13 Score=127.71 Aligned_cols=85 Identities=25% Similarity=0.270 Sum_probs=38.2
Q ss_pred CCceEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecC
Q 003855 240 LMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLS 319 (791)
Q Consensus 240 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~ 319 (791)
+|+.|+|++|+|++..|..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 33334444444433334444444444444444444443333334444444444444444443333334455555555555
Q ss_pred CcccC
Q 003855 320 RNQLS 324 (791)
Q Consensus 320 ~N~l~ 324 (791)
+|.+.
T Consensus 114 ~N~~~ 118 (174)
T 2r9u_A 114 NNPWD 118 (174)
T ss_dssp SSCBC
T ss_pred CCCcc
Confidence 55554
No 403
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=7.7e-15 Score=157.10 Aligned_cols=171 Identities=20% Similarity=0.151 Sum_probs=85.1
Q ss_pred CCCCEEEccCCccccccCccccC-----CCCCCEEEcccccCcccCCccc-cccCCCceEEecCCccCCCCCccc-----
Q 003855 191 SGLTLLSLHSNDLNGTISPTMGR-----LKRLQGLSLRNNNLEGSIPYDL-CHLKLMFGIRLTGNKLSGHIPPCL----- 259 (791)
Q Consensus 191 ~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~~----- 259 (791)
++|+.|+|++|.|+......+.. .++|++|+|++|.|+......+ ..+++|+.|+|++|.|+......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 56888888888887544444332 2678888888887764333222 234556666666666653322222
Q ss_pred cCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCC----Ccchhccc
Q 003855 260 VSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDI----PSTIGALK 335 (791)
Q Consensus 260 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~ 335 (791)
...++|++|+|++|.|+..... .++..+..+++|++|+|++|.|++.. +..+...+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~--------------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVA--------------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHH--------------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred hcCCccceeeCCCCCCChHHHH--------------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 1234455555555555321111 11222334445555555555544221 22233344
Q ss_pred cccccccccccCCCC----CCcccCCCCCCcEEEccCCccCCCCchhhhh
Q 003855 336 DLETLSLARNQFQGP----IPESVGSLISLESLDLSGNNLSGKIPKSLET 381 (791)
Q Consensus 336 ~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 381 (791)
+|+.|+|++|.|++. +...+...++|+.|||++|+|+......+..
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 455555555544421 1222334456666666666666444444443
No 404
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.36 E-value=4.4e-11 Score=129.08 Aligned_cols=314 Identities=11% Similarity=0.015 Sum_probs=191.2
Q ss_pred ccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCC
Q 003855 9 IGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKL 88 (791)
Q Consensus 9 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 88 (791)
+....+|+.+.+. ..++.+...+|.++.+|+.++|..+ ++ .|+...|... +|+.+.+..+ ++.+...+|... +|
T Consensus 42 ~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp GGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred cccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 4456778888887 4577788889999999999999754 76 7777777754 7888887654 665777778764 79
Q ss_pred CEEeccCccccccccccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCCCCcccCChhhhhhhhh
Q 003855 89 VALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGGILPPVIGNFSAS 168 (791)
Q Consensus 89 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 168 (791)
+.+++..+ +..+....|.+. +|+...+. +.++.+... .|..+.+|+.+.+..+.........
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~-~~v~~i~~~--------~f~~~~~l~~~~~~~~~~~~~~~~~------- 177 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIP-KSVTTIKDG--------IGYKAENLEKIEVSSNNKNYVAENY------- 177 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTC-CCCEEEEC-TTCCEECSC--------TTTTCTTCCEEEECTTCSSEEEETT-------
T ss_pred ccccCCCc-cccccccccccc-eeeeeecc-ceeeccccc--------hhcccccccccccccccceeecccc-------
Confidence 99988765 444566666654 44444333 234444333 3777888888887766544221110
Q ss_pred hhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecC
Q 003855 169 LQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTG 248 (791)
Q Consensus 169 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 248 (791)
...+.. ......+.....+..+.+..+.-. .....+....+|+.+.+..+ +..+....|.++..|+.+.+..
T Consensus 178 -----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~ 249 (379)
T 4h09_A 178 -----VLYNKN-KTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPK 249 (379)
T ss_dssp -----EEEETT-SSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECT
T ss_pred -----eecccc-cceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCC
Confidence 000111 122234455566666666554433 55566667777777777554 3435556667777777777765
Q ss_pred CccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcccCCCCC
Q 003855 249 NKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIP 328 (791)
Q Consensus 249 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 328 (791)
+ ++.....+|.++.+|+.+.+..+ +..+....|.++.+|+.+.+.++.++.+...+|.++.+|+.+.|..+ ++.+..
T Consensus 250 ~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~ 326 (379)
T 4h09_A 250 N-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV 326 (379)
T ss_dssp T-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred C-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH
Confidence 5 44345566666777777776543 44445556666677777777666666555666666666777666544 443445
Q ss_pred cchhccccccccccccccCCCCCCcccCCC
Q 003855 329 STIGALKDLETLSLARNQFQGPIPESVGSL 358 (791)
Q Consensus 329 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 358 (791)
.+|.++.+|+.+.+..+ ++.....+|.++
T Consensus 327 ~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 327 YAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred HHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 55666666666666543 432333444443
No 405
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=4e-12 Score=135.51 Aligned_cols=131 Identities=21% Similarity=0.190 Sum_probs=70.6
Q ss_pred EEcCCC-cCCCCCCccccCCCCCCeEEccC-CcCcccCCcccccCCCCCEEecCCcccCCCCCcchhccccccccccccc
Q 003855 268 LHLGSN-KLTSSIPSSLWSLEYILDINLSS-NSLNDSLPSNVQKLKVLTVLDLSRNQLSGDIPSTIGALKDLETLSLARN 345 (791)
Q Consensus 268 L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~i~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N 345 (791)
++++++ +|++ +|. +..+++|+.|+|++ |.|++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 4442 333 44455555555553 5555444455555555666666666655555555566666666666666
Q ss_pred cCCCCCCcccCCCCCCcEEEccCCccCCCCc-hhhhhcccCceEEccCCCCcccCCC
Q 003855 346 QFQGPIPESVGSLISLESLDLSGNNLSGKIP-KSLETLSQLKQFNVSHNRLEGEIPV 401 (791)
Q Consensus 346 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~l~l~~N~l~~~~~~ 401 (791)
+|++..+..|..++ |+.|+|++|++...-. .+|..+.......+..++++|.-|.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 66644444454444 7777777777764322 3344433333444555666666554
No 406
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.27 E-value=3.8e-10 Score=121.72 Aligned_cols=291 Identities=9% Similarity=0.046 Sum_probs=205.7
Q ss_pred ccccCCCCCCeeecCCCcccccCCccccCCCCCcEEeCCCCcCcccCCchhhhcCCCccEEEccCCcceecCCccCcCCC
Q 003855 7 TEIGNLQNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQLSGRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNAT 86 (791)
Q Consensus 7 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 86 (791)
.+|.++.+|+.++|.. .++.+...+|.+. +|+.+.+-.+ ++ .++...|.. .+|+.+.+..+- +.+...+|.+.
T Consensus 63 ~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~L~~i~lp~~~-~~i~~~~F~~~- 135 (379)
T 4h09_A 63 ANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TDLDDFEFPGAT-TEIGNYIFYNS- 135 (379)
T ss_dssp TTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CCCSEEECCTTC-CEECTTTTTTC-
T ss_pred HHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CCcccccCCCcc-ccccccccccc-
Confidence 3578999999999975 4887888899887 6888887654 66 777877774 589999998764 44667778775
Q ss_pred CCCEEeccCccccccccccccccccccccccccccccccCCCccc----cccccccCCCCCCcEEEccCCCCcccCChhh
Q 003855 87 KLVALDLGFNSFAGHILNTFGNLRHLSLLSQVMNNLTTESSSADQ----WSFLSSLTNCRNLTILSFGSNPLGGILPPVI 162 (791)
Q Consensus 87 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 162 (791)
+|+...+-.+ ++.+....|.+..+++...+..+........... ......+.....+..+.+..+.
T Consensus 136 ~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 205 (379)
T 4h09_A 136 SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV--------- 205 (379)
T ss_dssp CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC---------
T ss_pred eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce---------
Confidence 5777776544 5557778888888888877766554332211100 0011123333444444333221
Q ss_pred hhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccccCcccCCccccccCCCc
Q 003855 163 GNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMF 242 (791)
Q Consensus 163 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 242 (791)
.......+....+|+.+.+..+ ++.+....|.++.+|+.+.+..+ ++.+....|.++.+|+
T Consensus 206 -----------------~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 206 -----------------KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK 266 (379)
T ss_dssp -----------------CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred -----------------eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence 1233456677788888888765 44477778888888998888766 6656777888888888
Q ss_pred eEEecCCccCCCCCccccCCCCCcEEEcCCCcCCCCCCccccCCCCCCeEEccCCcCcccCCcccccCCCCCEEecCCcc
Q 003855 243 GIRLTGNKLSGHIPPCLVSLTSLRELHLGSNKLTSSIPSSLWSLEYILDINLSSNSLNDSLPSNVQKLKVLTVLDLSRNQ 322 (791)
Q Consensus 243 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~ 322 (791)
.+.+..+ +......+|.++++|+.+.+.++.++.+....|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+..+
T Consensus 267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~- 343 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS- 343 (379)
T ss_dssp EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-
Confidence 8888755 54456677888899999999888888777788889999999999755 66667778999999999988765
Q ss_pred cCCCCCcchhcccc
Q 003855 323 LSGDIPSTIGALKD 336 (791)
Q Consensus 323 l~~~~~~~~~~l~~ 336 (791)
++.+...+|.+++.
T Consensus 344 v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 344 ITLIESGAFEGSSI 357 (379)
T ss_dssp CCEECTTTTTTSSC
T ss_pred cCEEchhHhhCCCC
Confidence 55455667776643
No 407
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=2.2e-11 Score=129.81 Aligned_cols=102 Identities=22% Similarity=0.204 Sum_probs=49.6
Q ss_pred EEEccCC-ccccccCccccCCCCCCEEEccc-ccCcccCCccccccCCCceEEecCCccCCCCCccccCCCCCcEEEcCC
Q 003855 195 LLSLHSN-DLNGTISPTMGRLKRLQGLSLRN-NNLEGSIPYDLCHLKLMFGIRLTGNKLSGHIPPCLVSLTSLRELHLGS 272 (791)
Q Consensus 195 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 272 (791)
.++++++ +|+. +|. +..+++|++|+|++ |.|++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 5553 333 55555555555554 555544444555555555555555555544444455555555555555
Q ss_pred CcCCCCCCccccCCCCCCeEEccCCcC
Q 003855 273 NKLTSSIPSSLWSLEYILDINLSSNSL 299 (791)
Q Consensus 273 N~l~~~~~~~~~~l~~L~~L~l~~N~i 299 (791)
|+|++..+..|..++ |+.|+|.+|.+
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCc
Confidence 555433333333332 44444444333
No 408
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.21 E-value=3.3e-11 Score=122.89 Aligned_cols=148 Identities=13% Similarity=0.115 Sum_probs=115.0
Q ss_pred HHHHhhccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhcc-CCccceeeeeeccCCeeeE
Q 003855 496 IQRATDEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVR-HRNLIKILSSCSNPDFKAL 574 (791)
Q Consensus 496 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~l 574 (791)
+....+.|+....++.|+++.||++... ++.+++|+...........+.+|+.+++.+. +..+.++++++.+.+..++
T Consensus 9 l~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~l 87 (263)
T 3tm0_A 9 LKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNL 87 (263)
T ss_dssp HHHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEE
T ss_pred HHHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEE
Confidence 3455577888888999999999999864 6889999987532222345788999999884 6778899999988889999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccC------------------------------------
Q 003855 575 VLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGH------------------------------------ 618 (791)
Q Consensus 575 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~------------------------------------ 618 (791)
||||++|.++.+.+.. ......++.++++++..||...
T Consensus 88 v~e~i~G~~l~~~~~~------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (263)
T 3tm0_A 88 LMSEADGVLCSEEYED------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEED 161 (263)
T ss_dssp EEECCSSEEHHHHCCT------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTT
T ss_pred EEEecCCeehhhccCC------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccccccc
Confidence 9999999999876321 1223468889999999999610
Q ss_pred -------------------CCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 619 -------------------SSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 619 -------------------~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
....++|+|+++.||+++++..+.|+||+.+.
T Consensus 162 ~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 162 TPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp CSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred ccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 01458999999999999876667799998764
No 409
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.05 E-value=2.1e-10 Score=116.73 Aligned_cols=138 Identities=15% Similarity=0.089 Sum_probs=100.7
Q ss_pred hccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCc--cceeeeeeccCCeeeEEEec
Q 003855 501 DEFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRN--LIKILSSCSNPDFKALVLEF 578 (791)
Q Consensus 501 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e~ 578 (791)
..+.+....+.|..+.||++...+|+.+++|+.... ....+..|+.+++.+.+.+ +.+++++...++..++||||
T Consensus 20 ~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~ 96 (264)
T 1nd4_A 20 FGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGE 96 (264)
T ss_dssp TTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEEC
T ss_pred CCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEe
Confidence 345543333456669999998777888999997643 2245678999999886544 55688888877788999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccC----------------------------------------
Q 003855 579 MPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGH---------------------------------------- 618 (791)
Q Consensus 579 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~---------------------------------------- 618 (791)
++|.++. ... .+ ...++.++++.+..||...
T Consensus 97 i~G~~l~--~~~----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (264)
T 1nd4_A 97 VPGQDLL--SSH----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAP 167 (264)
T ss_dssp CSSEETT--TSC----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCH
T ss_pred cCCcccC--cCc----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccH
Confidence 9998884 211 11 2357778888888888421
Q ss_pred --------------CCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 619 --------------SSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 619 --------------~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
....++|+|++|.||++++++.+.|+|||.+.
T Consensus 168 ~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~ 213 (264)
T 1nd4_A 168 AELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG 213 (264)
T ss_dssp HHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred HHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence 01129999999999999887667799999874
No 410
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=2.8e-10 Score=120.49 Aligned_cols=207 Identities=14% Similarity=0.170 Sum_probs=128.2
Q ss_pred CCCCeeecCCCcccc-c-------CCccccCCCCCcEEeCCCCcCc---------ccCCchhhhcCCCccEEEccCCc-c
Q 003855 13 QNLQYLVFAENNLSG-L-------VPPTIFNISTMRILTLEGNQLS---------GRLPSTVGHLLPNIESLLLAANN-L 74 (791)
Q Consensus 13 ~~L~~L~Ls~n~l~~-~-------~~~~~~~l~~L~~L~L~~n~l~---------~~~p~~~~~~l~~L~~L~L~~N~-l 74 (791)
..++.|.+......+ . +..++..+++|+.|.+..+... +.++. +...+|+|+.|.|++|. +
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCc
Confidence 356677777655431 1 1334556788999988765331 12333 33347899999998884 3
Q ss_pred eecCCccCcCCCCCCEEeccCcccccccccccc--cccccccccccc--ccccccCCCcccccccccc--CCCCCCcEEE
Q 003855 75 TGIIPHSITNATKLVALDLGFNSFAGHILNTFG--NLRHLSLLSQVM--NNLTTESSSADQWSFLSSL--TNCRNLTILS 148 (791)
Q Consensus 75 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~l~~--n~l~~~~~~~~~~~~~~~l--~~l~~L~~L~ 148 (791)
. . +. +. +++|++|+|..|.+.......+. .+++|+.|+|+. |..... ..... +.+.+ ..+++|+.|+
T Consensus 186 ~-l-~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~-~~~~~--l~~~l~~~~~p~Lr~L~ 258 (362)
T 2ra8_A 186 S-I-GK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD-GDMNV--FRPLFSKDRFPNLKWLG 258 (362)
T ss_dssp B-C-CS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC-SCGGG--TGGGSCTTTCTTCCEEE
T ss_pred e-e-cc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc-hhHHH--HHHHHhcCCCCCcCEEe
Confidence 2 2 22 43 78999999999988765555554 789999998864 221110 00000 01112 3579999999
Q ss_pred ccCCCCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCcccccc----CccccCCCCCCEEEccc
Q 003855 149 FGSNPLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTI----SPTMGRLKRLQGLSLRN 224 (791)
Q Consensus 149 L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~ 224 (791)
|++|.+++..+..+.. ...+++|++|+|+.|.|+... +..+..+++|+.|+|++
T Consensus 259 L~~~~i~~~~~~~la~----------------------a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 259 IVDAEEQNVVVEMFLE----------------------SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp EESCTTHHHHHHHHHH----------------------CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred CCCCCCchHHHHHHHh----------------------CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 9999987532222211 013578999999999987543 23334578999999999
Q ss_pred ccCcccCCccccccCCCceEEecCCc
Q 003855 225 NNLEGSIPYDLCHLKLMFGIRLTGNK 250 (791)
Q Consensus 225 N~l~~~~~~~~~~l~~L~~L~L~~N~ 250 (791)
|.|+...-..+...- ...+++++++
T Consensus 317 n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 317 NYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp BBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred CcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 988754443444311 3568888887
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=1.5e-10 Score=122.59 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=39.1
Q ss_pred CCCCCEEecCCcccCCCCCcchh---ccccccccccccccCCCC----CCcccCCCCCCcEEEccCCccCCCCchhhhhc
Q 003855 310 LKVLTVLDLSRNQLSGDIPSTIG---ALKDLETLSLARNQFQGP----IPESVGSLISLESLDLSGNNLSGKIPKSLETL 382 (791)
Q Consensus 310 l~~L~~L~l~~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 382 (791)
+++|+.|+|++|.+.+..+..+. .+++|+.|+|+.|.+++. ++..+..+++|+.|+|++|.|+...-..+...
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 45566666665555432222222 245555556655555532 12222344566666666665553333333321
Q ss_pred ccCceEEccCCC
Q 003855 383 SQLKQFNVSHNR 394 (791)
Q Consensus 383 ~~L~~l~l~~N~ 394 (791)
- ...+++++|+
T Consensus 331 l-g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L-PMKIDVSDSQ 341 (362)
T ss_dssp C-CSEEECCSBC
T ss_pred c-CCEEEecCCc
Confidence 0 2345555554
No 412
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.85 E-value=4.8e-09 Score=112.12 Aligned_cols=143 Identities=15% Similarity=0.213 Sum_probs=105.9
Q ss_pred cccccCCCcceEEEEEEecCCcEEEEEEee--hhh-hHHHHHHHHHHHHHHhcc--CCccceeeeeeccC---CeeeEEE
Q 003855 505 ECNLLGTGSFGSVYKGTISDGTDVAIKIFN--LQL-ERAFRSFDSECEVLRNVR--HRNLIKILSSCSNP---DFKALVL 576 (791)
Q Consensus 505 ~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~--~~~-~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~---~~~~lv~ 576 (791)
.++.++.|.++.||+.... +..+++|+.. ... ......+.+|+.+++.+. +..+.++++++.+. +..++||
T Consensus 42 ~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm 120 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM 120 (359)
T ss_dssp EEEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred eEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence 3567899999999999875 4678888775 322 122356788999999996 45678888888766 4578999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccC--------------------------------------
Q 003855 577 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGH-------------------------------------- 618 (791)
Q Consensus 577 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~-------------------------------------- 618 (791)
||++|.++.+.. -..++..++..++.+++++|+.||...
T Consensus 121 e~v~G~~l~~~~---~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (359)
T 3dxp_A 121 EFVSGRVLWDQS---LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAM 197 (359)
T ss_dssp ECCCCBCCCCTT---CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHH
T ss_pred EecCCeecCCCc---cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHH
Confidence 999997774311 122677888899999999999999520
Q ss_pred ----------------CCCCeEecCCCCCCeEeCCCCc--EEEeeeccccc
Q 003855 619 ----------------SSAPIIHCDLKPTNILLDENMA--AHVSDFGISKL 651 (791)
Q Consensus 619 ----------------~~~~i~H~dlk~~Nill~~~~~--~kl~Dfgla~~ 651 (791)
....++|+|+++.||+++.++. +.|.||+.+..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 198 DSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 0246999999999999997753 68999999865
No 413
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.80 E-value=2e-09 Score=112.06 Aligned_cols=188 Identities=15% Similarity=0.150 Sum_probs=122.5
Q ss_pred ccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhcc-CCc--cceeeeeeccCC---eeeEEEecC
Q 003855 506 CNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVR-HRN--LIKILSSCSNPD---FKALVLEFM 579 (791)
Q Consensus 506 ~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lv~e~~ 579 (791)
++.++.|....||+.. ..+++|+.... .....+.+|.++++.+. +.. +.+++....... ..++|||++
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 4568899999999863 56899986533 33467888999998883 332 344555443333 347899999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHcc------------------------------------------
Q 003855 580 PNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHG------------------------------------------ 617 (791)
Q Consensus 580 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~------------------------------------------ 617 (791)
+|.++.+.... .++..++..++.++++.++.||..
T Consensus 99 ~G~~l~~~~~~---~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (304)
T 3sg8_A 99 KGVPLTPLLLN---NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDD 175 (304)
T ss_dssp CCEECCHHHHH---TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCeECCccccc---cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHH
Confidence 99888754332 256777888888888888888841
Q ss_pred ------------CCCCCeEecCCCCCCeEeCC--CCcEEEeeeccccccCCCCCcceeecc------------ccccccc
Q 003855 618 ------------HSSAPIIHCDLKPTNILLDE--NMAAHVSDFGISKLLGEGEDSVTQTMT------------MATIGYM 671 (791)
Q Consensus 618 ------------~~~~~i~H~dlk~~Nill~~--~~~~kl~Dfgla~~~~~~~~~~~~~~~------------~g~~~y~ 671 (791)
.....++|+|++|.||++++ +..+.++||+.+..-.+..+....... ....++.
T Consensus 176 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~ 255 (304)
T 3sg8_A 176 FYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHK 255 (304)
T ss_dssp HHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCS
T ss_pred HHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCC
Confidence 01235899999999999998 556889999998754321110000000 0001111
Q ss_pred C-CCccCCCCCCccccHHhHHHHHHHHHhCCCCC
Q 003855 672 A-PEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 704 (791)
Q Consensus 672 a-PE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~ 704 (791)
. |+... ......+.|++|.++|++.+|..+|
T Consensus 256 ~~~~~~~--r~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 256 DIPTVLE--KYRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp CHHHHHH--HHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHH--HHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 1 22111 1112368999999999999998765
No 414
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=9.3e-09 Score=98.17 Aligned_cols=120 Identities=10% Similarity=0.081 Sum_probs=61.5
Q ss_pred cccCCCCCcEEeCCCC-cCccc----CCchhhhcCCCccEEEccCCcceec----CCccCcCCCCCCEEeccCccccccc
Q 003855 32 TIFNISTMRILTLEGN-QLSGR----LPSTVGHLLPNIESLLLAANNLTGI----IPHSITNATKLVALDLGFNSFAGHI 102 (791)
Q Consensus 32 ~~~~l~~L~~L~L~~n-~l~~~----~p~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~ 102 (791)
.+...++|++|+|++| .|... +...+.. .++|++|+|++|.|... +...+...++|++|+|++|.|+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 3444455555555555 44321 1111111 34555555555555421 2233344455666666666555432
Q ss_pred ----ccccccccccccccc--ccccccccCCCccccccccccCCCCCCcEEEccCCCCcc
Q 003855 103 ----LNTFGNLRHLSLLSQ--VMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSNPLGG 156 (791)
Q Consensus 103 ----~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~ 156 (791)
...+...++|+.|++ ++|.|+..... .+...+...++|++|+|++|.+..
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~----~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEM----EIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH----HHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHH----HHHHHHHhCCCcCEEeccCCCCCh
Confidence 333444455666666 55665543211 123446677889999999998864
No 415
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=1.3e-08 Score=97.09 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=37.0
Q ss_pred cCCCCCCcEEEccCC-CCcccCChhhhhhhhhhhhhhcccccccccCCccccCCCCCCEEEccCCcccccc----Ccccc
Q 003855 138 LTNCRNLTILSFGSN-PLGGILPPVIGNFSASLQKFYAYECKLKGNIPQEIGNLSGLTLLSLHSNDLNGTI----SPTMG 212 (791)
Q Consensus 138 l~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~ 212 (791)
+...++|++|+|++| .+.......+ ...+...++|++|+|++|.|.... ...+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l---------------------~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~ 90 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKAC---------------------AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK 90 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHH---------------------HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHH---------------------HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH
Confidence 555666677777766 6653221111 122344556666666666665322 22333
Q ss_pred CCCCCCEEEcccccCcc
Q 003855 213 RLKRLQGLSLRNNNLEG 229 (791)
Q Consensus 213 ~l~~L~~L~L~~N~l~~ 229 (791)
..++|++|+|++|.|+.
T Consensus 91 ~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 91 VNNTLKSLNVESNFISG 107 (185)
T ss_dssp HCSSCCEEECCSSCCCH
T ss_pred hCCCcCEEECcCCcCCH
Confidence 44556666666666553
No 416
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.47 E-value=6.8e-07 Score=93.50 Aligned_cols=137 Identities=18% Similarity=0.221 Sum_probs=101.1
Q ss_pred ccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccC----CccceeeeeeccCCeeeEEEe
Q 003855 502 EFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRH----RNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 502 ~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h----~niv~l~~~~~~~~~~~lv~e 577 (791)
.+...+.++.|....||+. ++.+++|+..... ....+..|..+++.+.+ ..+.+++++ +..++|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~~--~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRDS--VRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSHH--HHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcHH--HHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEe
Confidence 4556778999999999998 6778999865432 23457889999998865 223455554 45689999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCC--------------------------------------
Q 003855 578 FMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHS-------------------------------------- 619 (791)
Q Consensus 578 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~-------------------------------------- 619 (791)
|++|.++.+.... .++..++..++.++++.+..||....
T Consensus 108 ~i~G~~l~~~~~~---~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (320)
T 3r70_A 108 YIKGERITYEQYH---KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDE 184 (320)
T ss_dssp CCCCBCCCHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred ecCCccccccccc---cCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhccccccc
Confidence 9999988643321 25666777788888888888884221
Q ss_pred ---------------------CCCeEecCCCCCCeEeCCCCcEEEeeeccccc
Q 003855 620 ---------------------SAPIIHCDLKPTNILLDENMAAHVSDFGISKL 651 (791)
Q Consensus 620 ---------------------~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~ 651 (791)
...++|+|++|.||+++.+..+.|+||+.+..
T Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 185 MLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp HHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred chHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 12359999999999999876679999998864
No 417
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.47 E-value=2.5e-08 Score=99.91 Aligned_cols=80 Identities=26% Similarity=0.410 Sum_probs=52.5
Q ss_pred ccCCCCCEEecCCcccCC--CCCcchhccccccccccccccCCCCCCcccCCCC--CCcEEEccCCccCCCCc-------
Q 003855 308 QKLKVLTVLDLSRNQLSG--DIPSTIGALKDLETLSLARNQFQGPIPESVGSLI--SLESLDLSGNNLSGKIP------- 376 (791)
Q Consensus 308 ~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~------- 376 (791)
.++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|+.|+|++|++++..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456677777777777765 3345566777777777777777743 2333333 78888888888876554
Q ss_pred hhhhhcccCceEE
Q 003855 377 KSLETLSQLKQFN 389 (791)
Q Consensus 377 ~~~~~l~~L~~l~ 389 (791)
..+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2466778887764
No 418
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=5.9e-08 Score=97.22 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=55.8
Q ss_pred ccCCCCCcE--EeCCCCcCcccCCc---hhhhcCCCccEEEccCCcceec--CCccCcCCCCCCEEeccCcccccc-ccc
Q 003855 33 IFNISTMRI--LTLEGNQLSGRLPS---TVGHLLPNIESLLLAANNLTGI--IPHSITNATKLVALDLGFNSFAGH-ILN 104 (791)
Q Consensus 33 ~~~l~~L~~--L~L~~n~l~~~~p~---~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~i~~~-~~~ 104 (791)
|...+.|+. ++++.|+.. .++. .+...+++|++|+|++|+|+++ +|..+..+++|+.|+|++|+|++. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG
T ss_pred cCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh
Confidence 333444444 555666443 3322 1122356666666666666652 334555666666666666666654 122
Q ss_pred cccccccccccccccccccccCCCccccccccccCCCCCCcEEE
Q 003855 105 TFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILS 148 (791)
Q Consensus 105 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 148 (791)
.+.++ +|+.|++++|.+..-...... -....+..+++|+.||
T Consensus 216 ~l~~l-~L~~L~L~~Npl~~~~~~~~~-y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 216 KIKGL-KLEELWLDGNSLCDTFRDQST-YISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTS-CCSEEECTTSTTGGGCSSHHH-HHHHHHHHCTTCCEES
T ss_pred hcccC-CcceEEccCCcCccccCcchh-HHHHHHHHCcccCeEC
Confidence 22223 666666666666531100000 0011255667777765
No 419
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.30 E-value=4.2e-06 Score=86.78 Aligned_cols=137 Identities=14% Similarity=0.111 Sum_probs=94.8
Q ss_pred ccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCC---ccceeeeeec-cCCeeeEEEecCCC
Q 003855 506 CNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHR---NLIKILSSCS-NPDFKALVLEFMPN 581 (791)
Q Consensus 506 ~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~l~~~~~-~~~~~~lv~e~~~~ 581 (791)
++.++.|....||+. |..+++|+... ......+..|.++++.+.+. .+.+++.++. ..+..++||||++|
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G 97 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG 97 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence 456788888899987 57788998532 23446788999999999642 3556666663 44567899999999
Q ss_pred CCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccC-------------------------------------------
Q 003855 582 GSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGH------------------------------------------- 618 (791)
Q Consensus 582 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~------------------------------------------- 618 (791)
.++.+.... .++..+...++.++++.|..||...
T Consensus 98 ~~l~~~~~~---~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 174 (306)
T 3tdw_A 98 QILGEDGMA---VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTL 174 (306)
T ss_dssp EECHHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred eECchhhhh---hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 888763221 1344555556666666666665311
Q ss_pred -------------CCCCeEecCCCCCCeEeCC---CCc-EEEeeeccccc
Q 003855 619 -------------SSAPIIHCDLKPTNILLDE---NMA-AHVSDFGISKL 651 (791)
Q Consensus 619 -------------~~~~i~H~dlk~~Nill~~---~~~-~kl~Dfgla~~ 651 (791)
....++|+|+++.||+++. ++. +.|+||+.+..
T Consensus 175 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 175 RFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 2335799999999999997 455 58999997753
No 420
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.28 E-value=4.2e-06 Score=85.15 Aligned_cols=135 Identities=19% Similarity=0.129 Sum_probs=97.1
Q ss_pred ccCCCcce-EEEEEEec-CCcEEEEEEeehhhhHHHHHHHHHHHHHHhcc-CCccceeeeeeccCCeeeEEEecCCCCCH
Q 003855 508 LLGTGSFG-SVYKGTIS-DGTDVAIKIFNLQLERAFRSFDSECEVLRNVR-HRNLIKILSSCSNPDFKALVLEFMPNGSL 584 (791)
Q Consensus 508 ~ig~G~~g-~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~g~L 584 (791)
.+..|..| .||+.... ++..+++|+-... ....+..|...++.+. +--+.++++++.+.+..++|||+++|.++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~ 107 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA 107 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence 34445554 68987754 5678999986543 2346778999998884 33467788888888999999999999888
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHcc-----------------------------------------------
Q 003855 585 EKWLYSHNYFLDILERLNIMIDVGSALEYLHHG----------------------------------------------- 617 (791)
Q Consensus 585 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~----------------------------------------------- 617 (791)
.+...... .....++.+++..+..||..
T Consensus 108 ~~~~~~~~-----~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (272)
T 4gkh_A 108 FQVLEEYP-----DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKE 182 (272)
T ss_dssp HHHHHHCG-----GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHH
T ss_pred cccccCCH-----HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHH
Confidence 77654321 22345666777777777730
Q ss_pred -------CCCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 618 -------HSSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 618 -------~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
.....++|+|+.+.||++++++.+-|+||+.+.
T Consensus 183 l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~ 222 (272)
T 4gkh_A 183 MHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG 222 (272)
T ss_dssp HHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred HHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence 012237899999999999988777899998774
No 421
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.27 E-value=2.4e-06 Score=87.48 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=60.5
Q ss_pred ccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCC---ccceeeeeeccCCeeeEEEecCC
Q 003855 504 NECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHR---NLIKILSSCSNPDFKALVLEFMP 580 (791)
Q Consensus 504 ~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~l~~~~~~~~~~~lv~e~~~ 580 (791)
...+.|+.|.++.||++...+|+.++||+...........+..|++.++.+++. .+.+++++. ..++||||++
T Consensus 18 ~~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~ 93 (288)
T 3d1u_A 18 AAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVD 93 (288)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCC
T ss_pred cceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEecc
Confidence 345689999999999999888999999996543222235688999999999765 577777764 3689999999
Q ss_pred CCCH
Q 003855 581 NGSL 584 (791)
Q Consensus 581 ~g~L 584 (791)
++++
T Consensus 94 g~~~ 97 (288)
T 3d1u_A 94 ERPP 97 (288)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9864
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.17 E-value=4.5e-06 Score=88.62 Aligned_cols=143 Identities=10% Similarity=0.144 Sum_probs=89.6
Q ss_pred ccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCc--cceeeeeeccC-CeeeEEEecCC
Q 003855 504 NECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRN--LIKILSSCSNP-DFKALVLEFMP 580 (791)
Q Consensus 504 ~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~~~~~-~~~~lv~e~~~ 580 (791)
...+.++.|....+|+... +++.+++|+.... ..+..|+.+++.+.... +.++++++.+. +..++||||++
T Consensus 44 ~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l~ 117 (362)
T 3ovc_A 44 SDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQ 117 (362)
T ss_dssp EEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECCC
T ss_pred ceEEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEecC
Confidence 3456788999999999876 5788999987533 25778889999886433 45667666554 56899999998
Q ss_pred CCCHHH---------------H---HhhCCC----C------------CCHHHHH---------------------HHHH
Q 003855 581 NGSLEK---------------W---LYSHNY----F------------LDILERL---------------------NIMI 605 (791)
Q Consensus 581 ~g~L~~---------------~---l~~~~~----~------------~~~~~~~---------------------~i~~ 605 (791)
|.++.+ . |+.... . -.|...+ ....
T Consensus 118 G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (362)
T 3ovc_A 118 GVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASVAQ 197 (362)
T ss_dssp SEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccchH
Confidence 765431 1 111100 0 0011110 0111
Q ss_pred HHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccccc
Q 003855 606 DVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLL 652 (791)
Q Consensus 606 ~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~ 652 (791)
.+.....++........++|+|+.+.||++++++.+.|+||+.+..-
T Consensus 198 ~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~g 244 (362)
T 3ovc_A 198 ALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFG 244 (362)
T ss_dssp HHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEEE
T ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCcccccC
Confidence 11222223321111245899999999999988777889999988653
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.00 E-value=5.3e-06 Score=88.23 Aligned_cols=80 Identities=10% Similarity=-0.010 Sum_probs=55.4
Q ss_pred cccc-CCCcceEEEEEEec-------CCcEEEEEEeehhh---hHHHHHHHHHHHHHHhcc-C--CccceeeeeeccC--
Q 003855 506 CNLL-GTGSFGSVYKGTIS-------DGTDVAIKIFNLQL---ERAFRSFDSECEVLRNVR-H--RNLIKILSSCSNP-- 569 (791)
Q Consensus 506 ~~~i-g~G~~g~Vy~~~~~-------~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~-h--~niv~l~~~~~~~-- 569 (791)
.+.| +.|....+|+.... +++.+++|+..... ......+..|+.+++.+. + -.+.++++++.+.
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 4567 88889999998764 26789999865432 001235677888888884 3 3466778777655
Q ss_pred -CeeeEEEecCCCCCHH
Q 003855 570 -DFKALVLEFMPNGSLE 585 (791)
Q Consensus 570 -~~~~lv~e~~~~g~L~ 585 (791)
+..++||||++|.++.
T Consensus 105 ~g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPP 121 (357)
T ss_dssp TSSCEEEEECCCCBCCC
T ss_pred cCCceEEEEecCCCChh
Confidence 3568999999886653
No 424
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=1.6e-06 Score=80.27 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=38.1
Q ss_pred CCCEEEccCCccccccCccccCCCCCCEEEccccc-CcccCCcccccc----CCCceEEecCCc-cCCCCCccccCCCCC
Q 003855 192 GLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNNN-LEGSIPYDLCHL----KLMFGIRLTGNK-LSGHIPPCLVSLTSL 265 (791)
Q Consensus 192 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l----~~L~~L~L~~N~-i~~~~~~~~~~l~~L 265 (791)
+|+.||++++.|+......+..+++|++|+|++|. |++..-..++.+ ++|+.|+|++|. |+...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45566666665554444455555566666665553 443322333332 234455554442 433222333344444
Q ss_pred cEEEcCCC
Q 003855 266 RELHLGSN 273 (791)
Q Consensus 266 ~~L~L~~N 273 (791)
++|+|+++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 44444443
No 425
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=1.5e-06 Score=80.49 Aligned_cols=84 Identities=8% Similarity=0.000 Sum_probs=38.6
Q ss_pred CCCCeeecCCCcccccCCccccCCCCCcEEeCCCCc-CcccCCchhhhc---CCCccEEEccCCc-ceecCCccCcCCCC
Q 003855 13 QNLQYLVFAENNLSGLVPPTIFNISTMRILTLEGNQ-LSGRLPSTVGHL---LPNIESLLLAANN-LTGIIPHSITNATK 87 (791)
Q Consensus 13 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~~---l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 87 (791)
.+|++|||++|.|+..--..+.++++|++|+|++|. |++.--..+... .++|++|+|++|. |++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 345556666555554444445555555555555553 442111112110 1235555555542 44332233444555
Q ss_pred CCEEeccCc
Q 003855 88 LVALDLGFN 96 (791)
Q Consensus 88 L~~L~L~~N 96 (791)
|++|+|+++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555554
No 426
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.73 E-value=9.5e-05 Score=79.69 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=48.9
Q ss_pred ccccCCCcceEEEEEEec-CCcEEEEEEeehhhh-------HHHHHHHHHHHHHHhccC--Cc-cceeeeeeccCCeeeE
Q 003855 506 CNLLGTGSFGSVYKGTIS-DGTDVAIKIFNLQLE-------RAFRSFDSECEVLRNVRH--RN-LIKILSSCSNPDFKAL 574 (791)
Q Consensus 506 ~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~e~~~l~~l~h--~n-iv~l~~~~~~~~~~~l 574 (791)
.+.+|.|.++.||++... +++.|+||......+ .....+..|.++++.+.. |. +.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 457999999999999754 568899997643221 112345678888888742 43 3355544 3445689
Q ss_pred EEecCCCC
Q 003855 575 VLEFMPNG 582 (791)
Q Consensus 575 v~e~~~~g 582 (791)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999764
No 427
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.72 E-value=0.00019 Score=75.58 Aligned_cols=139 Identities=15% Similarity=0.135 Sum_probs=78.5
Q ss_pred cccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhcc-----CCccceee-e--eeccCCeeeEEEec
Q 003855 507 NLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVR-----HRNLIKIL-S--SCSNPDFKALVLEF 578 (791)
Q Consensus 507 ~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----h~niv~l~-~--~~~~~~~~~lv~e~ 578 (791)
+.|+.|..+.||+....+| .+++|+..... ..+..|..+++.+. .|.++... | +....+..++||||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~~----~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~ 112 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRPE----KKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW 112 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSCH----HHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCCH----HHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence 4566677889999987554 58999887532 22334555555553 23333311 1 11245677899999
Q ss_pred CCCCCHH--------------HHHhh--CCC-----------CCCHHHHH------------------------------
Q 003855 579 MPNGSLE--------------KWLYS--HNY-----------FLDILERL------------------------------ 601 (791)
Q Consensus 579 ~~~g~L~--------------~~l~~--~~~-----------~~~~~~~~------------------------------ 601 (791)
++|.++. ..++. ... ...|...+
T Consensus 113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (346)
T 2q83_A 113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI 192 (346)
T ss_dssp CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9986431 11221 100 01232110
Q ss_pred -HHHHHHHHHHHHHHc--------c-CCCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 602 -NIMIDVGSALEYLHH--------G-HSSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 602 -~i~~~i~~~l~~LH~--------~-~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
.+...+..++.+|+. . .....++|+|+++.||+++.++.+.|+||+.+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 111123345666652 0 014679999999999999888899999998764
No 428
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.62 E-value=1.2e-05 Score=75.87 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=33.6
Q ss_pred cCcCCCCCCEEeccCcccccccc----ccccccccccccccccccccccCCCccccccccccCCCCCCcEEEccCC
Q 003855 81 SITNATKLVALDLGFNSFAGHIL----NTFGNLRHLSLLSQVMNNLTTESSSADQWSFLSSLTNCRNLTILSFGSN 152 (791)
Q Consensus 81 ~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N 152 (791)
++...+.|+.|+|++|+|..... .++..-+.|+.|+|++|.|+..... .+.+.+...+.|++|+|++|
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~----ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA----RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH----HHHHHTTTTCCCSEEECCCC
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH----HHHHHHhhCCceeEEECCCC
Confidence 33444455555555555543222 2222334455555555555433221 23445666667777777755
No 429
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.56 E-value=1.4e-05 Score=75.55 Aligned_cols=18 Identities=11% Similarity=0.340 Sum_probs=8.8
Q ss_pred cCCCCCCcEEEccCCCCc
Q 003855 138 LTNCRNLTILSFGSNPLG 155 (791)
Q Consensus 138 l~~l~~L~~L~L~~N~l~ 155 (791)
+...+.|+.|+|++|+|.
T Consensus 66 L~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HTTCSCCCEEECTTSCCB
T ss_pred HhhCCCcCEEEccCCCCC
Confidence 344444555555555554
No 430
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.52 E-value=0.00021 Score=73.09 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=56.9
Q ss_pred ccccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhcc-C--CccceeeeeeccCCeeeEEEec
Q 003855 502 EFNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVR-H--RNLIKILSSCSNPDFKALVLEF 578 (791)
Q Consensus 502 ~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h--~niv~l~~~~~~~~~~~lv~e~ 578 (791)
+...++.+|.|..+.||+.+..||+.|+||+...........+..|+..|+.+. . --+.+++++. ..++||||
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~ 91 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEW 91 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEEC
T ss_pred CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEe
Confidence 455567899999999999999999999999876443333346788999999884 2 1244555542 23789999
Q ss_pred CCCCC
Q 003855 579 MPNGS 583 (791)
Q Consensus 579 ~~~g~ 583 (791)
++++.
T Consensus 92 l~~~~ 96 (288)
T 3f7w_A 92 VDERP 96 (288)
T ss_dssp CCCCC
T ss_pred ecccC
Confidence 98764
No 431
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.50 E-value=0.00058 Score=70.27 Aligned_cols=138 Identities=14% Similarity=0.094 Sum_probs=92.0
Q ss_pred cccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhcc---CCccceeeeeeccCCeeeEEEecCCC
Q 003855 505 ECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVR---HRNLIKILSSCSNPDFKALVLEFMPN 581 (791)
Q Consensus 505 ~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~~~ 581 (791)
..+.|+.|....+|+... ++..+++|+.... ....+..|.+.++.+. ...+.++++++...+..++||||+++
T Consensus 40 ~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G 115 (312)
T 3jr1_A 40 HKEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNK 115 (312)
T ss_dssp EEEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCC
T ss_pred eeEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccC
Confidence 346789999999999886 5678899987643 2456788999998884 35688888888877889999999998
Q ss_pred CCHH--------H---HHhhCCC---------------------CCCHHHHH---HHHHH----------------HHHH
Q 003855 582 GSLE--------K---WLYSHNY---------------------FLDILERL---NIMID----------------VGSA 610 (791)
Q Consensus 582 g~L~--------~---~l~~~~~---------------------~~~~~~~~---~i~~~----------------i~~~ 610 (791)
.++. + .|+.... .-+|.... ++..+ +...
T Consensus 116 ~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~ 195 (312)
T 3jr1_A 116 SKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQI 195 (312)
T ss_dssp CCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 7541 1 2222111 12454332 11111 1111
Q ss_pred -HHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeec
Q 003855 611 -LEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFG 647 (791)
Q Consensus 611 -l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfg 647 (791)
...|........++|+|+.+.|++++.++ +.|.|+.
T Consensus 196 l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 196 VADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 12332112345799999999999999887 8888873
No 432
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.34 E-value=0.00084 Score=72.77 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=48.9
Q ss_pred CCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCC---CCCCccccHHhHHHHHHH
Q 003855 620 SAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSE---GIVSAKCDVYSYGVLLME 696 (791)
Q Consensus 620 ~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~---~~~~~~~Dv~s~G~vl~e 696 (791)
...++|+|+++.||+++.++ ++++||+.+..-.+..+-. .....-...|.+|+.... .......++.+....+|+
T Consensus 231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dla-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (420)
T 2pyw_A 231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDIG-AYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTWN 308 (420)
T ss_dssp CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHHH-HHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHHH-HHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHH
Confidence 45799999999999999876 9999999887532211100 000001134666664431 112233556678888888
Q ss_pred HHhCC
Q 003855 697 TFTRK 701 (791)
Q Consensus 697 lltg~ 701 (791)
.++++
T Consensus 309 ~y~~~ 313 (420)
T 2pyw_A 309 LFNKR 313 (420)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87753
No 433
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.07 E-value=0.00069 Score=59.70 Aligned_cols=60 Identities=22% Similarity=0.365 Sum_probs=38.8
Q ss_pred ccccccccCC-CCCCcccCCCCCCcEEEccCCccCCCCchhhhhcccCceEEccCCCCcccCC
Q 003855 339 TLSLARNQFQ-GPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSQLKQFNVSHNRLEGEIP 400 (791)
Q Consensus 339 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~ 400 (791)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|++.+...
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 4555666654 23443332 357777777777776666777777777777777777766543
No 434
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.96 E-value=0.00093 Score=58.86 Aligned_cols=56 Identities=25% Similarity=0.393 Sum_probs=36.3
Q ss_pred EEeCCCCcCc-ccCCchhhhcCCCccEEEccCCcceecCCccCcCCCCCCEEeccCcccc
Q 003855 41 ILTLEGNQLS-GRLPSTVGHLLPNIESLLLAANNLTGIIPHSITNATKLVALDLGFNSFA 99 (791)
Q Consensus 41 ~L~L~~n~l~-~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 99 (791)
.++.+++.++ ..+|..+ .++|++|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666663 3566543 236777777777777666666777777777777777654
No 435
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=96.93 E-value=0.0034 Score=65.12 Aligned_cols=156 Identities=12% Similarity=0.126 Sum_probs=85.5
Q ss_pred ChhHHHHHhhcccc-----ccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCc--cceeee
Q 003855 492 PYLDIQRATDEFNE-----CNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRN--LIKILS 564 (791)
Q Consensus 492 ~~~~~~~~~~~~~~-----~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~ 564 (791)
+..++......|.. .+.|+.|....+|+....+| .+++|+..... ..+.+..|+.+++.+.... +.+++.
T Consensus 8 ~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~--~~~~l~~e~~~l~~L~~~g~~vP~~~~ 84 (322)
T 2ppq_A 8 TEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLPLP 84 (322)
T ss_dssp CHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBCC
T ss_pred CHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCC--CHHHHHHHHHHHHHHHHCCCCCCcccC
Confidence 34445555555543 34567788889999987655 68899876521 1234456777777764222 233332
Q ss_pred ee------ccCCeeeEEEecCCCCCHH-----------H---HHhhC--C--CC----C---CHHHHHH-----------
Q 003855 565 SC------SNPDFKALVLEFMPNGSLE-----------K---WLYSH--N--YF----L---DILERLN----------- 602 (791)
Q Consensus 565 ~~------~~~~~~~lv~e~~~~g~L~-----------~---~l~~~--~--~~----~---~~~~~~~----------- 602 (791)
.. ...+..+++++|++|..+. + .++.. . .. . .|.....
T Consensus 85 ~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 164 (322)
T 2ppq_A 85 RKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEK 164 (322)
T ss_dssp BTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTST
T ss_pred CCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhh
Confidence 21 1235678999999886431 0 11210 0 00 1 1222110
Q ss_pred -HHHHHHHHHHHHHcc---CCCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 603 -IMIDVGSALEYLHHG---HSSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 603 -i~~~i~~~l~~LH~~---~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
+...+.+.+++++.. .....++|+|+.+.||+++++..+.++||+.+.
T Consensus 165 ~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 165 GLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp THHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 011234455555532 113469999999999999987666899998764
No 436
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=96.91 E-value=0.0026 Score=65.31 Aligned_cols=137 Identities=16% Similarity=0.165 Sum_probs=74.7
Q ss_pred ccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCcc-ceeeeeeccCCeeeEEEecC-CCCC
Q 003855 506 CNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNL-IKILSSCSNPDFKALVLEFM-PNGS 583 (791)
Q Consensus 506 ~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~-~~g~ 583 (791)
.+.|+.|....+|+. ..+++|+....... ......|+.+++.+....+ .+++++. ++.-++|+||+ ++.+
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~-~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~g~~ 94 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEE-YINRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAGAQT 94 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTTCEE
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCccc-eeCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCCCcc
Confidence 567888999999998 56888987643211 1123457777777743222 4555554 33457899999 5543
Q ss_pred HHH------------------HHhhCCCC----CCH-HHHHHHHH--------------HHHHHH----HHHHccCCCCC
Q 003855 584 LEK------------------WLYSHNYF----LDI-LERLNIMI--------------DVGSAL----EYLHHGHSSAP 622 (791)
Q Consensus 584 L~~------------------~l~~~~~~----~~~-~~~~~i~~--------------~i~~~l----~~LH~~~~~~~ 622 (791)
+.. .++..... .+. ..+..+.. .+.+.+ ..+........
T Consensus 95 l~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~ 174 (301)
T 3dxq_A 95 MSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHPLPLA 174 (301)
T ss_dssp CCHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHHHHHHSSCCCCE
T ss_pred CCHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhcCCCce
Confidence 321 01111110 111 11111100 011111 11111122345
Q ss_pred eEecCCCCCCeEeCCCCcEEEeeeccccc
Q 003855 623 IIHCDLKPTNILLDENMAAHVSDFGISKL 651 (791)
Q Consensus 623 i~H~dlk~~Nill~~~~~~kl~Dfgla~~ 651 (791)
++|+|+.+.||+ ..++.+.++||..+..
T Consensus 175 l~HgDl~~~Nil-~~~~~~~lID~e~a~~ 202 (301)
T 3dxq_A 175 ACHCDPLCENFL-DTGERMWIVDWEYSGM 202 (301)
T ss_dssp EECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred eeccCCCcCCEE-ECCCCEEEEecccccC
Confidence 899999999999 5667789999988764
No 437
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=96.89 E-value=0.0057 Score=63.78 Aligned_cols=140 Identities=12% Similarity=0.080 Sum_probs=73.0
Q ss_pred cccCCCcceE-EEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccC--CccceeeeeeccCCeeeEEEecCCCCC
Q 003855 507 NLLGTGSFGS-VYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRH--RNLIKILSSCSNPDFKALVLEFMPNGS 583 (791)
Q Consensus 507 ~~ig~G~~g~-Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h--~niv~l~~~~~~~~~~~lv~e~~~~g~ 583 (791)
+.++.|.... +|+....++..+++|....... +.+..|+.+++.+.. -.+.+++.+..+.+ ++|||++.+.+
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~---~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~ 98 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEEG---GDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDAL 98 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTTT---CCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCB
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCCC---ccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcc
Confidence 3565554444 6677654467788886543321 233446677766632 23455666543333 78999997767
Q ss_pred HHHHHhhCC-------------------------CCCCHHHHH-------H-H------------HHHHHHHHHHHHc--
Q 003855 584 LEKWLYSHN-------------------------YFLDILERL-------N-I------------MIDVGSALEYLHH-- 616 (791)
Q Consensus 584 L~~~l~~~~-------------------------~~~~~~~~~-------~-i------------~~~i~~~l~~LH~-- 616 (791)
+.+++.... ..++..... . + ...+...+..+..
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~ 178 (333)
T 3csv_A 99 FTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQ 178 (333)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 665443210 011111100 0 0 0011112222211
Q ss_pred cCCCCCeEecCCCCCCeEeCCC----CcEEEeeeccccc
Q 003855 617 GHSSAPIIHCDLKPTNILLDEN----MAAHVSDFGISKL 651 (791)
Q Consensus 617 ~~~~~~i~H~dlk~~Nill~~~----~~~kl~Dfgla~~ 651 (791)
......++|||+.+.||+++.+ +.+.|+||+.+..
T Consensus 179 ~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 179 LEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp CCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred ccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 1114569999999999999875 6899999998864
No 438
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=96.74 E-value=0.0069 Score=57.34 Aligned_cols=103 Identities=14% Similarity=0.063 Sum_probs=68.8
Q ss_pred CCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeeccccccCCCCCccee
Q 003855 582 GSLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISKLLGEGEDSVTQ 661 (791)
Q Consensus 582 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~~~~~ 661 (791)
-+|.+.|+..+.+++++++|.++.|.+.+|.-.-... .. ..+=+.|..|++..+|.|...+ +.+.
T Consensus 33 vSL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~~--~~-~~~i~~~~~i~l~~dG~V~f~~-~~s~----------- 97 (229)
T 2yle_A 33 LSLEEILRLYNQPINEEQAWAVCYQCCGSLRAAARRR--QP-RHRVRSAAQIRVWRDGAVTLAP-AADD----------- 97 (229)
T ss_dssp EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT--CC-CCCCCSGGGEEEETTSCEEECC-C--------------
T ss_pred ccHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcc--cC-CceecCCcceEEecCCceeccc-cccc-----------
Confidence 3899999998889999999999999999987762100 01 1222456889999999998763 1110
Q ss_pred ecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCC
Q 003855 662 TMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 703 (791)
Q Consensus 662 ~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p 703 (791)
.....+.|||... ...+.+.=|||+|+++|.-+--..|
T Consensus 98 ---~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 98 ---AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp ------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred ---ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 0122466888763 3556788999999999998875444
No 439
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.71 E-value=0.017 Score=60.03 Aligned_cols=155 Identities=12% Similarity=0.077 Sum_probs=85.9
Q ss_pred hhHHHHHhhcccc-----ccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCc--cceeeee
Q 003855 493 YLDIQRATDEFNE-----CNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRN--LIKILSS 565 (791)
Q Consensus 493 ~~~~~~~~~~~~~-----~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~ 565 (791)
...+....+.|.. ...++ |....||+....+|+.+++|+...... ....+..|..+++.+.... +.+++..
T Consensus 13 ~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~-~~~~~~~E~~~~~~L~~~g~~vp~~~~~ 90 (328)
T 1zyl_A 13 PDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPERW-TADQILEEHQFALQLVNDEVPVAAPVAF 90 (328)
T ss_dssp HHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTCCCEEEEEECTTTS-CHHHHHHHHHHHHHHHHTTCSBCCCCCB
T ss_pred HHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCCCEEEEEEcCCCCC-CHHHHHHHHHHHHHHHHcCCeecceeec
Confidence 3444444444432 23466 778899998877777899999863321 2345666888887774222 3444443
Q ss_pred -----eccCCeeeEEEecCCCCCHH-----H------H---Hhh--C------CCCCCHHHH----HHH-----------
Q 003855 566 -----CSNPDFKALVLEFMPNGSLE-----K------W---LYS--H------NYFLDILER----LNI----------- 603 (791)
Q Consensus 566 -----~~~~~~~~lv~e~~~~g~L~-----~------~---l~~--~------~~~~~~~~~----~~i----------- 603 (791)
....+..++||||++|.++. . . ++. . ....++... ..+
T Consensus 91 ~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (328)
T 1zyl_A 91 NGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGL 170 (328)
T ss_dssp TTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTT
T ss_pred CCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHH
Confidence 11234567899999875321 1 1 111 0 011222211 001
Q ss_pred ----HHHHHHHHHHHHcc---CCCCCeEecCCCCCCeEeCCCCcEEEeeeccccc
Q 003855 604 ----MIDVGSALEYLHHG---HSSAPIIHCDLKPTNILLDENMAAHVSDFGISKL 651 (791)
Q Consensus 604 ----~~~i~~~l~~LH~~---~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~ 651 (791)
...+...++.+... .....++|+|+++.||+++ + .+.++||+.+..
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 171 KAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 01111223333211 1244689999999999999 4 899999987753
No 440
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.68 E-value=0.0026 Score=68.85 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=48.3
Q ss_pred ccccCCCcceEEEEEEecC--------CcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCc-cceeeeeeccCCeeeEEE
Q 003855 506 CNLLGTGSFGSVYKGTISD--------GTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRN-LIKILSSCSNPDFKALVL 576 (791)
Q Consensus 506 ~~~ig~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~ 576 (791)
++.|+.|....+|+....+ ++.+++|+...... .+.+..|..+++.+...+ ..++++.+.+ .+|+
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~--~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~ 151 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPET--ESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLE 151 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCC--HHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCCc--HHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEE
Confidence 4568888889999998753 57899998843211 134457888888884333 3566766543 3899
Q ss_pred ecCCCC
Q 003855 577 EFMPNG 582 (791)
Q Consensus 577 e~~~~g 582 (791)
||++|-
T Consensus 152 e~l~G~ 157 (429)
T 1nw1_A 152 EYIPSR 157 (429)
T ss_dssp CCCCEE
T ss_pred EEeCCc
Confidence 999863
No 441
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.63 E-value=0.0073 Score=63.79 Aligned_cols=139 Identities=12% Similarity=0.154 Sum_probs=81.7
Q ss_pred cccCCCcceEEEEEEec--------CCcEEEEEEeehhhhHHHHHHHHHHHHHHhcc-CCccceeeeeeccCCeeeEEEe
Q 003855 507 NLLGTGSFGSVYKGTIS--------DGTDVAIKIFNLQLERAFRSFDSECEVLRNVR-HRNLIKILSSCSNPDFKALVLE 577 (791)
Q Consensus 507 ~~ig~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e 577 (791)
+.+..|-...+|+.... +++.|++|+.... ........+|..+++.+. +.-..++++++.+ .+|||
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e 130 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQ 130 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEE
Confidence 46767778889998864 2478999986332 223345668999998884 3333566776654 28999
Q ss_pred cCCCCCHH--------------HH---HhhCC----CCCC--HHHHHHHHHHHHH-------------------HHHHHH
Q 003855 578 FMPNGSLE--------------KW---LYSHN----YFLD--ILERLNIMIDVGS-------------------ALEYLH 615 (791)
Q Consensus 578 ~~~~g~L~--------------~~---l~~~~----~~~~--~~~~~~i~~~i~~-------------------~l~~LH 615 (791)
|++|.++. +. ++... .... +.++.++..++.. .+..|.
T Consensus 131 ~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 210 (379)
T 3feg_A 131 YIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLR 210 (379)
T ss_dssp CCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHH
T ss_pred EecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHH
Confidence 99875432 11 11111 1122 3444444443321 233332
Q ss_pred ----ccCCCCCeEecCCCCCCeEeCCC----CcEEEeeecccc
Q 003855 616 ----HGHSSAPIIHCDLKPTNILLDEN----MAAHVSDFGISK 650 (791)
Q Consensus 616 ----~~~~~~~i~H~dlk~~Nill~~~----~~~kl~Dfgla~ 650 (791)
.......++|+|+.+.||+++.+ +.+.++||..|.
T Consensus 211 ~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~ 253 (379)
T 3feg_A 211 KLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS 253 (379)
T ss_dssp HHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred HHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence 22224468999999999999876 789999998775
No 442
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.27 E-value=0.006 Score=66.29 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=46.6
Q ss_pred ccccCCCcceEEEEEEecC-CcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCcc-ceeeeeeccCCeeeEEEecCCCCC
Q 003855 506 CNLLGTGSFGSVYKGTISD-GTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNL-IKILSSCSNPDFKALVLEFMPNGS 583 (791)
Q Consensus 506 ~~~ig~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~g~ 583 (791)
++.|+.|-...+|+....+ +..+++|+........ -....|..+++.+...++ .++++++. + ..||||++|-+
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~-idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~~ 187 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEI-INREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGYA 187 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSC-SCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSEE
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhh-cCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCcc
Confidence 4568888889999998764 4788999874332111 112468888888864444 46677663 2 35999998743
No 443
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.19 E-value=0.0057 Score=64.88 Aligned_cols=73 Identities=14% Similarity=0.255 Sum_probs=43.8
Q ss_pred ccccCCCcceEEEEEEecC---------CcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCc-cceeeeeeccCCeeeEE
Q 003855 506 CNLLGTGSFGSVYKGTISD---------GTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRN-LIKILSSCSNPDFKALV 575 (791)
Q Consensus 506 ~~~ig~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~l~~~~~~~~~~~lv 575 (791)
.+.++.|....+|+....+ ++.+++|+....... ......|..+++.+...+ ..++++... -++|
T Consensus 38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~-~~~~~~E~~~l~~L~~~g~~P~~~~~~~----~~~v 112 (369)
T 3c5i_A 38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDE-LYNTISEFEVYKTMSKYKIAPQLLNTFN----GGRI 112 (369)
T ss_dssp EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGG-TSCHHHHHHHHHHHHHTTSSCCEEEEET----TEEE
T ss_pred EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccc-eecHHHHHHHHHHHHhcCCCCceEEecC----CcEE
Confidence 3467778888999988653 268899987543222 112356888888774333 345665442 2689
Q ss_pred EecCCCCC
Q 003855 576 LEFMPNGS 583 (791)
Q Consensus 576 ~e~~~~g~ 583 (791)
|||++|.+
T Consensus 113 ~e~i~G~~ 120 (369)
T 3c5i_A 113 EEWLYGDP 120 (369)
T ss_dssp EECCCSEE
T ss_pred EEEecCCc
Confidence 99998753
No 444
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=95.98 E-value=0.024 Score=59.19 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=28.0
Q ss_pred CCCeEecCCCCCCeEeCCCCcEEEeeeccccc
Q 003855 620 SAPIIHCDLKPTNILLDENMAAHVSDFGISKL 651 (791)
Q Consensus 620 ~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~~ 651 (791)
...++|+|+.+.||++++++.+.++||+.+..
T Consensus 205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~ 236 (339)
T 3i1a_A 205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPML 236 (339)
T ss_dssp GCEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred CceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence 35699999999999999888899999987754
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=94.46 E-value=0.22 Score=52.73 Aligned_cols=140 Identities=16% Similarity=0.172 Sum_probs=81.5
Q ss_pred cccCCCcceEEEEEEecC--------CcEEEEEEeehhhhH------------------HHHHHHHHHHHHHhcc-CCcc
Q 003855 507 NLLGTGSFGSVYKGTISD--------GTDVAIKIFNLQLER------------------AFRSFDSECEVLRNVR-HRNL 559 (791)
Q Consensus 507 ~~ig~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~------------------~~~~~~~e~~~l~~l~-h~ni 559 (791)
+.|..|--..+|+....+ ++.|.+++.-...+. ..+....|..+++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 456667788899988753 367889887432211 0112335888888884 4445
Q ss_pred ceeeeeeccCCeeeEEEecCCCCCHH--------------HH---HhhCC----CCCC--HHHHHHHHHHHH--------
Q 003855 560 IKILSSCSNPDFKALVLEFMPNGSLE--------------KW---LYSHN----YFLD--ILERLNIMIDVG-------- 608 (791)
Q Consensus 560 v~l~~~~~~~~~~~lv~e~~~~g~L~--------------~~---l~~~~----~~~~--~~~~~~i~~~i~-------- 608 (791)
.++++++.++ +|+||++|-+|. .. ++... .... +..+.++..++.
T Consensus 138 Pkl~~~~~~G----~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQG----RLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETTE----EEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCCC----eEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 5677776532 899999864331 11 11111 1122 223333333221
Q ss_pred --------------HHH----HHHHccCCCCCeEecCCCCCCeEeCCC------CcEEEeeecccc
Q 003855 609 --------------SAL----EYLHHGHSSAPIIHCDLKPTNILLDEN------MAAHVSDFGISK 650 (791)
Q Consensus 609 --------------~~l----~~LH~~~~~~~i~H~dlk~~Nill~~~------~~~kl~Dfgla~ 650 (791)
+-+ .++........++|+|+.+.||+++++ +.+.++||..|.
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~ 279 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCC
Confidence 112 223322234568999999999999876 789999998774
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=93.57 E-value=0.23 Score=53.15 Aligned_cols=73 Identities=14% Similarity=0.243 Sum_probs=46.8
Q ss_pred ccccCCCcceEEEEEEecC--------CcEEEEEEeehhhhHHHHHHHHHHHHHHhcc-CCccceeeeeeccCCeeeEEE
Q 003855 506 CNLLGTGSFGSVYKGTISD--------GTDVAIKIFNLQLERAFRSFDSECEVLRNVR-HRNLIKILSSCSNPDFKALVL 576 (791)
Q Consensus 506 ~~~ig~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ 576 (791)
++.+..|-...+|+....+ ++.|++|+..... +..-...+|..+++.+. +.-..++++.+. -+.||
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I~ 149 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GKFYDSKVELDVFRYLSNINIAPNIIADFP----EGRIE 149 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEE
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-chhcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEEE
Confidence 3567777788999988753 5789999864332 11112356888888774 333345555432 26899
Q ss_pred ecCCCCC
Q 003855 577 EFMPNGS 583 (791)
Q Consensus 577 e~~~~g~ 583 (791)
||++|.+
T Consensus 150 efI~G~~ 156 (424)
T 3mes_A 150 EFIDGEP 156 (424)
T ss_dssp ECCCSEE
T ss_pred EEeCCcc
Confidence 9998865
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=87.45 E-value=0.091 Score=56.12 Aligned_cols=30 Identities=33% Similarity=0.387 Sum_probs=24.9
Q ss_pred CeEecCCCCCCeEe------CCCCcEEEeeeccccc
Q 003855 622 PIIHCDLKPTNILL------DENMAAHVSDFGISKL 651 (791)
Q Consensus 622 ~i~H~dlk~~Nill------~~~~~~kl~Dfgla~~ 651 (791)
.++|+|+.+.||++ +++..++++||-+|..
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 35799999999999 4567799999988753
No 448
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=81.25 E-value=0.2 Score=54.35 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=16.8
Q ss_pred cccccCCCcceEEEEEEecC-CcEEEE------EEeehhh--hHHHHHHHHHHHHHHhccCCccceeeeee
Q 003855 505 ECNLLGTGSFGSVYKGTISD-GTDVAI------KIFNLQL--ERAFRSFDSECEVLRNVRHRNLIKILSSC 566 (791)
Q Consensus 505 ~~~~ig~G~~g~Vy~~~~~~-~~~vav------K~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~ 566 (791)
+.+.+| ||+||+|.+.. ..+||| |...... ++....+.+|..+++..+|||+++.+++.
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~ 213 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFK 213 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceE
Confidence 445676 99999999864 467888 6654322 23345678889999999999999988764
No 449
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=79.86 E-value=3.9 Score=38.74 Aligned_cols=116 Identities=11% Similarity=0.076 Sum_probs=78.6
Q ss_pred cCCccceeeeeeccCCeeeEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHH-HHHccCCCCCeEecCCCCCCe
Q 003855 555 RHRNLIKILSSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALE-YLHHGHSSAPIIHCDLKPTNI 633 (791)
Q Consensus 555 ~h~niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~-~LH~~~~~~~i~H~dlk~~Ni 633 (791)
.||+. -..+-.+.+...+.++.-+++-=...+++ .+...+++++..|+.... +++ .-+|--+.|+|+
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~~----~~~~eKlrll~nl~~L~~~~~~------~r~tf~l~P~NL 115 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIRK----TTLLSRIRAAIHLVSKVKHHSA------RRLIFIVCPENL 115 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHHT----SCHHHHHHHHHHHHHHHSSCCS------SSEECCCCGGGE
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHHh----cCHHHHHHHHHHHHHHHHHhhh------CceeEEEeCceE
Confidence 57877 44455677777777776544433334433 678899999999888766 555 356778999999
Q ss_pred EeCCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCc
Q 003855 634 LLDENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 706 (791)
Q Consensus 634 ll~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~ 706 (791)
++|.++.+++.-.|+-..+ +|.- .++.-=.-.+=+++..++.++..|+.
T Consensus 116 ~f~~~~~p~i~hRGi~~~l-------------------pP~e-----~~ee~fl~qyKali~all~~K~~Fe~ 164 (219)
T 4ano_A 116 MFNRALEPFFLHVGVKESL-------------------PPDE-----WDDERLLREVKATVLALTEGEYRFDE 164 (219)
T ss_dssp EECTTCCEEESCCEETTTB-------------------SSCS-----CCHHHHHHHHHHHHHHHTTCSSCHHH
T ss_pred EEeCCCcEEEEEcCCcccC-------------------CCCC-----CCHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 9999999999877764332 2321 11222233566788888888887764
No 450
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=72.45 E-value=3.5 Score=38.92 Aligned_cols=120 Identities=16% Similarity=0.220 Sum_probs=80.3
Q ss_pred cCCccceeeeeeccCCeeeEEEecCCCC-CHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCeEecCCCCCCe
Q 003855 555 RHRNLIKILSSCSNPDFKALVLEFMPNG-SLEKWLYSHNYFLDILERLNIMIDVGSALEYLHHGHSSAPIIHCDLKPTNI 633 (791)
Q Consensus 555 ~h~niv~l~~~~~~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i~H~dlk~~Ni 633 (791)
.||+.+.. .+-.+.+...+.|+.-+.+ +... +++ .+...+++++..|+....+++ .-+|--+.|+|+
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~-ik~----~~~~eKlr~l~ni~~l~~~~~------~r~tf~L~P~NL 110 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDN-IKS----FTKNEKLRYLLNIKNLEEVNR------TRYTFVLAPDEL 110 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGG-GGG----SCHHHHHHHHHHGGGGGGGGG------SSEECCCSGGGE
T ss_pred cCCcccce-EEEEcccEEEEEEEcCcccCCHHH-HHh----cCHHHHHHHHHHHHHHHHHhc------CceEEEEecceE
Confidence 57877755 4555666666666654322 2222 322 678899999999998886666 256778999999
Q ss_pred EeCCCCcEEEeeeccccccCCCCCcceeecccccccccCCCccCCCCCCccccHHhHHHHHHHHHhCCCCCCccccC
Q 003855 634 LLDENMAAHVSDFGISKLLGEGEDSVTQTMTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTG 710 (791)
Q Consensus 634 ll~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Dv~s~G~vl~elltg~~p~~~~~~~ 710 (791)
+++.++.+++.-.|+...+. |. ..++..=.-.+=+++..+++++..|+....+
T Consensus 111 ~f~~~~~p~i~~RGik~~l~-------------------P~-----~~~ee~fL~qyKAliiall~~K~~Fe~l~~G 163 (215)
T 4ann_A 111 FFTRDGLPIAKTRGLQNVVD-------------------PL-----PVSEAEFLTRYKALVICAFNEKQSFDALVEG 163 (215)
T ss_dssp EECTTSCEEESCCEETTTBS-------------------CC-----CCCHHHHHHHHHHHHHHHHCTTCCHHHHHHS
T ss_pred EEcCCCCEEEEEccCccCCC-------------------CC-----CCCHHHHHHHHHHHHHHHHcCCCCHHHHHcC
Confidence 99999999998777643322 22 1122223345678889999999988764444
No 451
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=57.14 E-value=26 Score=28.36 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=28.8
Q ss_pred ccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCEEEcccc
Q 003855 179 LKGNIPQEIGNLSGLTLLSLHSNDLNGTISPTMGRLKRLQGLSLRNN 225 (791)
Q Consensus 179 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 225 (791)
++.+...+|.++++|+.+.+-.+ ++.+...+|.++.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34445566777777777777654 34466666777777777766553
No 452
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.64 E-value=37 Score=27.41 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=28.9
Q ss_pred CccccccCccccCCCCCCEEEcccccCcccCCccccccCCCceEEecC
Q 003855 201 NDLNGTISPTMGRLKRLQGLSLRNNNLEGSIPYDLCHLKLMFGIRLTG 248 (791)
Q Consensus 201 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 248 (791)
..++.+...+|.++.+|+.+.+-.+ ++.+....|.++.+|+.+.+..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3455566667777777777777654 3335555666666666666654
No 453
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=45.04 E-value=3.2e+02 Score=30.60 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHH--HHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 598 LERLNIMIDVGS--ALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 598 ~~~~~i~~~i~~--~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
..+..++..+|- .+.|+= + =+|=.++|||++.+|.+.=+|||.+-
T Consensus 529 ~ar~nF~~SlA~~Svv~YIL------G--lGDRH~~NILid~tG~v~HIDFG~~f 575 (696)
T 2x6h_A 529 EVMDTYIKSCAGYCVITYLL------G--VGDRHLDNLLLTTNGKLFHIDFGYIL 575 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------T--CCCCCTTTEEECTTSCEEECCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHc------c--CCCCCCcceEEeCCCCEEEEeehhhh
Confidence 445566665552 344553 2 26888999999999999999999874
No 454
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=36.89 E-value=84 Score=31.67 Aligned_cols=140 Identities=18% Similarity=0.112 Sum_probs=70.7
Q ss_pred cccccccCCCcceEEEEEEecCCcEEEEEEeehhhhHHHHHHHHHHHHHHhccCCccceeeee-----------------
Q 003855 503 FNECNLLGTGSFGSVYKGTISDGTDVAIKIFNLQLERAFRSFDSECEVLRNVRHRNLIKILSS----------------- 565 (791)
Q Consensus 503 ~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~----------------- 565 (791)
+..++..-.|..|. |.+.. ++..|+||-.. .-..+.+-.++...=.+.-|+..-+.-.
T Consensus 71 v~~I~~s~~Gstgv-ff~~t-d~~~~VVK~s~---~l~~E~l~s~LA~~LGlpiP~~Riv~~~~~E~~e~~~~L~~~~~~ 145 (342)
T 1cja_A 71 FKGIERSEKGTEGL-FFVET-ESGVFIVKRST---NIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAIDKS 145 (342)
T ss_dssp EEEEEECCSTTSCE-EEEEE-SSCEEEEECCT---THHHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHHCSS
T ss_pred eeEEEeccCCCCCe-EEEEe-CCCEEEEeCcH---HHHHHHHHHHHHHHhCCCCCCeeEEeeCcHHHHHHHHHHHHhhhh
Confidence 44455556666554 44444 57789999442 2222333334433333455542211110
Q ss_pred -----eccCCeeeEEEecCCCCCHHHHHhhC-CCCCCHHHHHHHHHHH--HHHHHHHHccCCCCCeEe-cCCCCCCeEeC
Q 003855 566 -----CSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDV--GSALEYLHHGHSSAPIIH-CDLKPTNILLD 636 (791)
Q Consensus 566 -----~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i--~~~l~~LH~~~~~~~i~H-~dlk~~Nill~ 636 (791)
........++|||++|..|.+.-... ...+... .+.++ .-++.....+.+..+.+. .-=.+.|||++
T Consensus 146 ~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~~~~~f~~~----~~k~LG~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~ 221 (342)
T 1cja_A 146 FRVITTLANQANILLMELVRGITLNKLTTTSAPEVLTKS----TMQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNIMLS 221 (342)
T ss_dssp SCHHHHHTTCSEEEEEECCCEEESTTCCSSSHHHHSCHH----HHHHHHHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEE
T ss_pred hHHHHHhhcccceehhhhcCCCccccchhhhhhhhcCHH----HHHhhchhheehhhhcCCccCcccccCCCChhheEEe
Confidence 00122456999999876554321110 0002222 22232 234566665544443322 23578999998
Q ss_pred CCCc-EEEeeeccccc
Q 003855 637 ENMA-AHVSDFGISKL 651 (791)
Q Consensus 637 ~~~~-~kl~Dfgla~~ 651 (791)
+++. +.++|-+.+..
T Consensus 222 ~~n~~~~~IDhn~af~ 237 (342)
T 1cja_A 222 ERGATVVPIDSKIIPL 237 (342)
T ss_dssp SBTTCEEECSCCCCCC
T ss_pred CCCCeEEEEcCCcccc
Confidence 6554 88999988854
No 455
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=36.02 E-value=4.8e+02 Score=28.72 Aligned_cols=81 Identities=12% Similarity=0.106 Sum_probs=49.4
Q ss_pred eeeeeeccCCeeeEEEecCCCCCHHHHH----------hhCC----C--CCCHHHHHHHHHHHHH--HHHHHHccCCCCC
Q 003855 561 KILSSCSNPDFKALVLEFMPNGSLEKWL----------YSHN----Y--FLDILERLNIMIDVGS--ALEYLHHGHSSAP 622 (791)
Q Consensus 561 ~l~~~~~~~~~~~lv~e~~~~g~L~~~l----------~~~~----~--~~~~~~~~~i~~~i~~--~l~~LH~~~~~~~ 622 (791)
+.+.+........+ .|++++.++.+.+ .+.. . ...+..+..++..+|- .+.|+= |
T Consensus 403 ~~Y~Vipls~~~Gl-IE~V~~~tl~~il~~~~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YIL------G 475 (614)
T 3ls8_A 403 TPYKVLATSTKHGF-MQFIQSVPVAEVLDTEGSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYIL------G 475 (614)
T ss_dssp CCCCEEESSSSEEE-EECCCCEEHHHHHHHTSSHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHH------T
T ss_pred eccEEEEecCCCce-EEEeCCccHHHHHHccChHHHHHHHhCCCccccccccHHHHHHHHHHHHHHhHhheee------e
Confidence 34444444444443 4777765555444 3211 0 1235566666666553 455664 2
Q ss_pred eEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 623 IIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 623 i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
| +|=.++|||++.+|++.=+|||.+-
T Consensus 476 i--gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 476 V--GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp C--CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred c--cCCCCcceeEcCCCCEeeeehHHhh
Confidence 3 5778999999999999999999874
No 456
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=20.32 E-value=3.1e+02 Score=32.49 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=40.6
Q ss_pred CCHHHHHhhCCCCCCHHH-HHHHHHHHHH--HHHHHHccCCCCCeEecCCCCCCeEeCCCCcEEEeeecccc
Q 003855 582 GSLEKWLYSHNYFLDILE-RLNIMIDVGS--ALEYLHHGHSSAPIIHCDLKPTNILLDENMAAHVSDFGISK 650 (791)
Q Consensus 582 g~L~~~l~~~~~~~~~~~-~~~i~~~i~~--~l~~LH~~~~~~~i~H~dlk~~Nill~~~~~~kl~Dfgla~ 650 (791)
+.|.+|+.+......|.. +..++..+|- .+.|+= +| +|=.++|||++.+|.+.=+|||.+-
T Consensus 898 ~~L~~~f~~~~~~~~~~~ar~nF~~S~A~ysvv~YiL------gi--gDRH~~NILid~tG~v~HIDFG~~f 961 (1091)
T 3hhm_A 898 HTLHQWLKDKNKGEIYDAAIDLFTRSCAGYCVATFIL------GI--GDRHNSNIMVKDDGQLFHIDFGHFL 961 (1091)
T ss_dssp THHHHHHHTTSCTTSHHHHHHHHHHHHHHHHHHHHHH------TC--CCCCTTTEEEETTSCEEECCCCCCS
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHhhhhhheEEEE------ee--cCCCCcceEEeCCCCEEEEeehhhh
Confidence 356667765443334443 3455555542 355554 23 5778999999999999999999884
Done!