Query 003856
Match_columns 791
No_of_seqs 136 out of 232
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 13:15:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03635 Vps35: Vacuolar prote 100.0 1E-237 3E-242 2075.2 16.0 731 11-750 1-762 (762)
2 KOG1107 Membrane coat complex 100.0 4E-225 9E-230 1854.2 63.0 753 27-790 1-759 (760)
3 KOG3682 Predicted membrane pro 100.0 1.2E-40 2.6E-45 370.9 42.7 532 19-639 145-759 (930)
4 KOG1107 Membrane coat complex 99.4 2.2E-12 4.8E-17 147.2 17.9 197 36-268 148-346 (760)
5 KOG1410 Nuclear transport rece 79.4 35 0.00075 41.4 14.0 80 342-422 273-354 (1082)
6 PF03000 NPH3: NPH3 family; I 62.5 1.1E+02 0.0025 33.1 12.5 57 333-397 193-249 (258)
7 PLN03217 transcription factor 51.6 9.7 0.00021 34.2 1.8 49 730-778 13-64 (93)
8 KOG2274 Predicted importin 9 [ 48.3 5.5E+02 0.012 32.7 16.2 139 367-506 612-792 (1005)
9 PF08767 CRM1_C: CRM1 C termin 44.3 1.9E+02 0.0042 32.1 11.0 141 341-493 89-247 (319)
10 PF14677 FANCI_S3: FANCI solen 35.3 3.6E+02 0.0078 28.5 10.8 110 258-396 105-218 (219)
11 KOG1422 Intracellular Cl- chan 33.4 39 0.00084 35.5 3.2 72 63-152 124-201 (221)
12 PF14675 FANCI_S1: FANCI solen 30.0 7E+02 0.015 26.5 12.5 142 368-537 7-162 (223)
13 PF08673 RsbU_N: Phosphoserine 29.6 2.1E+02 0.0046 25.3 6.7 55 319-379 18-72 (77)
14 PF14223 UBN2: gag-polypeptide 26.4 3.5E+02 0.0077 24.9 8.2 52 220-272 32-83 (119)
15 KOG4524 Uncharacterized conser 25.3 1.6E+03 0.034 29.1 17.7 54 481-536 801-854 (1014)
16 PF06743 FAST_1: FAST kinase-l 23.4 1.3E+02 0.0027 25.9 4.2 45 323-371 19-64 (71)
17 PF03474 DMA: DMRTA motif; In 22.6 81 0.0018 24.5 2.4 24 259-283 5-28 (39)
18 COG2147 RPL19A Ribosomal prote 22.4 1.4E+02 0.003 29.7 4.5 45 37-81 96-145 (150)
19 KOG0889 Histone acetyltransfer 21.4 2.8E+03 0.06 31.1 17.5 112 259-377 1958-2072(3550)
No 1
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=100.00 E-value=1.2e-237 Score=2075.21 Aligned_cols=731 Identities=55% Similarity=0.902 Sum_probs=228.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHhccccHHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHHhHHhHHHHHHHHhhcCCChhh
Q 003856 11 KWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIID 90 (791)
Q Consensus 11 k~L~ea~~~Vk~qa~~Mkr~ld~~~l~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~g~~l~d 90 (791)
|||+||+++||+||++||||||+++|||||||||+||+||||++||||+||||||+|||+|++|+.||.|+|++|++++|
T Consensus 1 k~L~ea~~~vk~qa~~Mkr~Ld~~~l~~aLk~as~mL~ELRt~~LsPk~YYeLYm~vfd~L~~L~~~l~~~~~~~~~l~d 80 (762)
T PF03635_consen 1 KLLEEALSVVKQQAFLMKRCLDNNKLMDALKHASNMLSELRTSSLSPKQYYELYMQVFDELRHLSSYLKDEHKKGRKLAD 80 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHhHHHHHHHHHHhccCCCcHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcccchhHHHHHHHHHHhhhhccCCCCCCCCCCCCC
Q 003856 91 LYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDAD 170 (791)
Q Consensus 91 LYE~VQyagnIvPRLYLmItVG~~yi~~~~~p~~eiLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LP~~~s~~~~~~g 170 (791)
|||+||||||||||||||||||++||+++++|++||||||+|||||||||+|||||||||+|++||+|||+++ +++++|
T Consensus 81 LYE~VQyagnIvPRLYLmitVG~~yi~~~~~~~~eilkDlvEMcrGVQhP~RGLFLR~YL~q~~k~~LP~~~~-~~~~~g 159 (762)
T PF03635_consen 81 LYELVQYAGNIVPRLYLMITVGSVYIKSKEAPAKEILKDLVEMCRGVQHPIRGLFLRYYLSQMTKDKLPDTGS-EEGNGG 159 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhccccchhHHHHHHHHHHHhhhhCCCCCC-CCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875 677899
Q ss_pred ChhhhHHHHHHhHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHhhhchhhhhhhcCCCHHHHhhhcchHHHHHHHhcc
Q 003856 171 TVNDAMEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCK 250 (791)
Q Consensus 171 ~v~dsi~Fll~NF~EMNKLWVRlQhqg~~rer~~R~~ER~eL~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~c~ 250 (791)
++.||++||++||+||||||||||||||+|||+||++||+|||+||||||||||||||+|+++|++.|||+||||||+||
T Consensus 160 ~~~dsi~Fll~NF~EMNKLWVRlqhqg~srer~~R~~ER~eL~iLVG~NLvrLSqLeg~~~~~Y~~~iLP~ileqiv~c~ 239 (762)
T PF03635_consen 160 DVNDSIDFLLTNFIEMNKLWVRLQHQGHSREREKREKERKELRILVGSNLVRLSQLEGVDLEMYKEKILPRILEQIVQCR 239 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHhHhHhhCCchhhHhhHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHhhccCCCchh-----------hhH
Q 003856 251 DEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEF-----------LQV 319 (791)
Q Consensus 251 D~~AQeYLmd~IiQvFPDefHl~TL~~lL~~~~~l~~~V~i~~Il~sLi~RL~~y~~~~~~~i~~~-----------~~~ 319 (791)
|++||||||||||||||||||++||++||++|++++|+||+++|+++|||||++|+.+++++.++. .++
T Consensus 240 D~lAQeYL~d~iIQvFPDefHL~TL~~lL~~~~~L~~~V~i~~il~~Li~RL~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (762)
T PF03635_consen 240 DVLAQEYLMDVIIQVFPDEFHLQTLDELLSACLQLQPGVNIKEILISLIDRLANYAEREPESESEFESEKEEEEEIPEDV 319 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhccccccccchhhhhcccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999877654321 268
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCC---CCCCChHHHHHHHHHH
Q 003856 320 EAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGE---GKLEDNRATKQIVALL 396 (791)
Q Consensus 320 ~lF~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~---~~~~~~~~~~~l~~lL 396 (791)
++|++||+++.++++++|++|++|++++++|+++|+++|||++++|||.+|++|++++... +...++++.++|++||
T Consensus 320 ~lF~~f~~~~~~l~~~~~~l~~~~~i~l~~sll~l~l~~yp~~~~~vd~vl~~~~~~l~~~~~~~~~~~~~~~~~L~~LL 399 (762)
T PF03635_consen 320 DLFEVFWDQLSKLIEARPDLPLEDIISLLVSLLNLSLKCYPDNLDYVDKVLKFCAEKLSNIGDSGKNHSSEAQKELVKLL 399 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887 3345666778899999
Q ss_pred HchhhhhhhHHHHHcCCCchHHHhcCCchhHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHhcCCCCCCCC----
Q 003856 397 SAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQ---- 472 (791)
Q Consensus 397 ~~pl~~~~~~~~vL~l~~f~~Ll~~l~~~~r~~va~~Il~~~l~~~~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~---- 472 (791)
+.|++++.++.++|+|++|++|++.|++++||+||..|+++++++++.|+|+++++.+|++++||++|++++++++
T Consensus 400 ~~Pi~~~~~i~~vL~L~~y~~Ll~~L~~~~rk~IA~~Ii~~iL~~~~~Ist~e~v~~ll~li~pLi~d~~d~~~~~~~~~ 479 (762)
T PF03635_consen 400 TLPIDSYFSILTVLSLENYPPLLSLLPYETRKQIALEIIDNILENNTIISTPEEVDNLLELISPLIKDQDDQPSSEPDLK 479 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHhhcccHHHHHcCccHHHHHHhCChHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhhCCCCCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988887642
Q ss_pred CChhhHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHHHhcCCCCCC-------
Q 003856 473 VDEDDFKEEQNSVARLIQMLQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKVLVRQLQGPEENP------- 545 (791)
Q Consensus 473 ~~~~e~~~eq~lv~r~vhli~~~D~e~q~~~l~~~r~~f~~gg~~ri~~t~p~LV~~~l~~L~~~~~~~~~~~------- 545 (791)
.+++||.+||++|||+||+++++|+++||++|..+|+||++||++|++||||||||++|+ |+|+++..+...
T Consensus 480 ~~~eef~eeQ~~varliHLi~~~D~d~~~~iL~~~rk~~~~Gg~~ri~~TlP~LIf~~lk-L~r~~~~~~~~~~~~~~~~ 558 (762)
T PF03635_consen 480 EDSEEFAEEQELVARLIHLIRSDDPDQQFEILNIARKHFGNGGPKRIRYTLPPLIFAALK-LARRIKDLKQKYPNNAIKD 558 (762)
T ss_dssp -----TCCCHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHCTT-SSSHHHHCHHHHHHHHH-HHHHHHCCC---------C
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCCceeeeeHHHHHHHHHH-HHHHHHHhhccchhhcccc
Confidence 478899999999999999999999999999999999999999999999999999999999 999998765211
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHH
Q 003856 546 FGEEGSTTPKKVFQLLNQTIETLYGVP-APELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHL 624 (791)
Q Consensus 546 ~~~~~~~~~kk~f~fv~~~i~~l~~~~-~~~~~lkLyLq~A~vAd~~~~~~iaYeFf~qAf~iyEE~i~ds~~Q~~al~~ 624 (791)
..++...+++++|+|||+||+.|.+.. .++++||||||||++||+++++++|||||+|||++|||+|+||++|++||.+
T Consensus 559 ~~~~~~~~~~kifkfi~~~i~~L~~~~~~~~lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~ 638 (762)
T PF03635_consen 559 DDEDWEKKCKKIFKFIHQCISALYQIHPSSELALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTL 638 (762)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 011111356899999999999996543 4899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCC-----CCCcchhHHHHHHHHHHHHHHHH
Q 003856 625 IIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQ-----DNMKDGERVLLCLKRALRIANAA 699 (791)
Q Consensus 625 ii~tL~~~~~~~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~-----~~~~d~krVleCLqkslkiA~~~ 699 (791)
|||||+++|+|++||||+|+||||+||||||||||||||||+||||||+++. +.+||||||+|||||||||||+|
T Consensus 639 ii~tL~~~r~~~~Enyd~L~tk~t~yasKLLKK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~ 718 (762)
T PF03635_consen 639 IIGTLQKTRSFSEENYDTLITKCTLYASKLLKKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSC 718 (762)
T ss_dssp HHHHHCC-----HHHHHHHHHHHHHHHHC-SSHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999863 36999999999999999999999
Q ss_pred HHhhhccCCCCccHhhHHHHHhhhhhhhccCCccccHHHHHHHHHHHHHHh
Q 003856 700 QQMSNATRGSTGSVTLFVEILNKYLYFFEKGNTQINAAAIQSLIELITAEM 750 (791)
Q Consensus 700 ~d~~~~~~~~~~~~~L~veiLn~~ly~~~~~~~~v~~~~in~Li~li~~~~ 750 (791)
|| +.++++|||||||+|+|||++||++||++||||||++|++|+
T Consensus 719 md-------~~~~~~LfveILn~ylyf~~~~~~~vt~~~in~LIelI~~~~ 762 (762)
T PF03635_consen 719 MD-------PSQSVQLFVEILNRYLYFFEKGNEEVTVKYINGLIELIKENL 762 (762)
T ss_dssp SS-------HHHHHHHHHHHHHHHHHHHTTT-TTS-HCHHHHHHHHHHCC-
T ss_pred hC-------cchhHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHhcCC
Confidence 99 899999999999999999999999999999999999999985
No 2
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-225 Score=1854.15 Aligned_cols=753 Identities=66% Similarity=1.026 Sum_probs=723.3
Q ss_pred HHHHhccccHHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHHhHHhHHHHHHHHhhcCCChhhHHHHHHHhcchhhHHH
Q 003856 27 MHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLY 106 (791)
Q Consensus 27 Mkr~ld~~~l~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~g~~l~dLYE~VQyagnIvPRLY 106 (791)
|+||||+||+||||||++.||+|||||.||||+||||||..||+|+.|+.||.|++++|++++||||+||||||||||||
T Consensus 1 m~r~ld~~~l~dalk~~~~ml~elRts~LsPk~YYeLym~~~~~L~~l~~~l~ee~~~~~~l~dLYElVQyagni~PRlY 80 (760)
T KOG1107|consen 1 MKRCLDKNKLMDALKHSAQMLSELRTSKLSPKKYYELYMRSFDELRCLEIFLKEETRRGHKLADLYELVQYAGNILPRLY 80 (760)
T ss_pred CchhhhcccHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHhhcccchhHHHHHHHHHHhhhhccCCCCCCCCCCCCCChhhhHHHHHHhHHHH
Q 003856 107 LLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEM 186 (791)
Q Consensus 107 LmItVG~~yi~~~~~p~~eiLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LP~~~s~~~~~~g~v~dsi~Fll~NF~EM 186 (791)
||||||++|++++++|+|||||||+|||||||||+||||||+||+|++|++||+.|+++++....+.|+++|++.||+||
T Consensus 81 Ll~TvGsvyik~~~a~~keIlkDlveMCRgVQhPlRGLFLR~YL~q~tr~~LP~~~edee~~~~~~~d~~~Fvl~NF~EM 160 (760)
T KOG1107|consen 81 LLITVGSVYIKSKEAPRKEILKDLVEMCRGVQHPLRGLFLRSYLAQCTRDKLPDIGEDEEGDADTVMDAVEFVLINFTEM 160 (760)
T ss_pred eeeEeceEEEecCCCcHHHHHHHHHHHHhccccchhHHHHHHHHHhcccccCCCCCCCccchhhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888877777889999999999999
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHHHHHhhhchhhhhhhcCCCHHHHhhhcchHHHHHHHhccchhhhhHHHhHhHhhC
Q 003856 187 NKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVF 266 (791)
Q Consensus 187 NKLWVRlQhqg~~rer~~R~~ER~eL~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~c~D~~AQeYLmd~IiQvF 266 (791)
||||||||||||+||||+|++||+|||||||+|||||||++|++.++|++.|||+||||||+|||++||+||||||||||
T Consensus 161 NKLWVRmQHqGp~re~ekrekER~ELriLVG~nLvrLsQle~~~~~mY~~~vLp~iLEQvV~CrD~laQeYLmeciiQvF 240 (760)
T KOG1107|consen 161 NKLWVRMQHQGPSREKEKREKERNELRILVGKNLVRLSQLEGVDLEMYRDDVLPRILEQVVNCRDELAQEYLMECIIQVF 240 (760)
T ss_pred HHHhhhhccCCchhHHHHHHHHHHHHHHHHhhhHHHHHHhccccHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHhhHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHhhcCCCChhhHHH
Q 003856 267 PDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVT 346 (791)
Q Consensus 267 PDefHl~TL~~lL~~~~~l~~~V~i~~Il~sLi~RL~~y~~~~~~~i~~~~~~~lF~~f~~~i~~l~~~~~~l~~~d~i~ 346 (791)
|||||++||+.+|+||.+++|+||++.++.+|++||++|+.+++++.|....+.+|++||.++.+++++||+||+.++++
T Consensus 241 ~DefHLqTLd~~L~ac~~L~~~V~i~~~l~~l~dRLs~y~t~~~e~~p~~~~~~~f~~~~~~~~~vi~~r~dmpl~~~v~ 320 (760)
T KOG1107|consen 241 PDEFHLQTLDTLLGACPQLQPSVNIKILLIALVDRLSNYATSENEVLPAPLQMEAFEKLSNAITKVIQSRPDMPLDDIVT 320 (760)
T ss_pred CcHHHHHhHHHHHHHHHhcCCCcchHHHHHHHhhhhhHHHhccccCCchHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHH
Confidence 99999999999999999999999999999999999999999998887776689999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHH--HHHHHHhcCCCCCCChHHHHHHHHHHHchhhhhhhHHHHHcCCCchHHHhcCCc
Q 003856 347 LYSSLLTFTLHVHPDRLDYADQVL--GACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDS 424 (791)
Q Consensus 347 l~~sll~l~l~~yp~~~~~vd~il--~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vL~l~~f~~Ll~~l~~ 424 (791)
+++|+++|+++|||++.+|+|++| +.|...+...+...+.+..+++.++|..|++.|+++.+++++++|++++..+++
T Consensus 321 L~~sll~~~l~~ypdr~dy~dqvf~~~~~~~~~s~~~~~~~s~~~k~l~~~L~~p~~~y~nvvtll~L~~~~~v~~~~D~ 400 (760)
T KOG1107|consen 321 LYVSLLNFTLKCYPDRLDYADQVFQGGSCINQLSSTGKLADSPVTKELVALLSAPLEKYKNVLTLLKLSNYPKVMEYLDY 400 (760)
T ss_pred HHHHHHHhhHhhcCchHHHHHHHccCCCcccccCccccccccHHHHHHHHHHcchHHHHHhHHHHHHhhccCchhHHhch
Confidence 999999999999999999999999 888888877777778888899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHhhhcCCCHHHHHHHH
Q 003856 425 ETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFKII 504 (791)
Q Consensus 425 ~~r~~va~~Il~~~l~~~~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~~~~~e~~~eq~lv~r~vhli~~~D~e~q~~~l 504 (791)
++++.+|..|++++++.++.+.+.++++.+|+++++|++|.+..|.++.|+++|.+||++||++||++.++||+.|+.|+
T Consensus 401 ~~~~~ma~~i~q~~l~~~t~~~t~d~v~~l~~li~~likd~~~~~~~~~d~edf~eeqn~va~lIh~L~nddp~~q~~il 480 (760)
T KOG1107|consen 401 ETRKNMASYIVQSILENNTVISTADEVDSLFSLISGLIKDQDGQSADEVDEEDFQEEQNLVARLIHLLRNDDPEEQFLIL 480 (760)
T ss_pred HHHHHHHHHHHHHHHhhcceeehHhhHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred HHHHHHHhccCCccccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003856 505 CTVRKHILTGGPKRLPFTVPPLVFSSLKVLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQC 584 (791)
Q Consensus 505 ~~~r~~f~~gg~~ri~~t~p~LV~~~l~~L~~~~~~~~~~~~~~~~~~~~kk~f~fv~~~i~~l~~~~~~~~~lkLyLq~ 584 (791)
..+|++|.+||++ ++||+||+||++|+ |+|+++..++....|+ ....+++|+|+..| +.+.+++.++++|||||||
T Consensus 481 ~~~r~~f~~gG~~-l~~t~Pplv~~~~~-Lir~~~~~~~~~~~~~-s~~~~~~~q~~~~~-~l~~~~e~~eL~LrLyLq~ 556 (760)
T KOG1107|consen 481 NSAKKHFIKGGPN-LKYTLPPLVFSAYK-LVRRFRDMKDNDDKWD-SATKKFIFQFLNIC-ELLSNVELPELALRLYLQC 556 (760)
T ss_pred HHHHHHhhcCCcc-ccccccHHHHHHHH-HHHHcccccccchhhh-hhhHHHHHHHHhHH-HHhccCCchhhHHHHHHHH
Confidence 9999999999986 99999999999999 9999998876655554 34568999999999 4456668999999999999
Q ss_pred HHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHhccCchhhHHHH
Q 003856 585 AEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAV 664 (791)
Q Consensus 585 A~vAd~~~~~~iaYeFf~qAf~iyEE~i~ds~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~askLLkK~dQcrav 664 (791)
|++||+|+++++|||||+|||++|||+|||||+|++||.+|||||++||+|++||||+|+||||+|||||||||||||||
T Consensus 557 A~aAd~~~~etvaYEFfsQAfslyEeeisDSkaQ~~al~lIiGTlqr~~~f~~En~dpL~~kctl~asKLLKKPDQcRaV 636 (760)
T KOG1107|consen 557 AEAADQCDLETVAYEFFSQAFSLYEEEISDSKAQVTALQLIIGTLQKTRVFSVENRDPLTTKCTLYAAKLLKKPDQCRAV 636 (760)
T ss_pred HHhcccCCCcchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhccHHHhhcccccccchHHHHHHHHHHHhhcCCcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCC--CCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCccHhhHHHHHhhhhhhhccCCccccHHHHHHH
Q 003856 665 YACSHLFWVDD--QDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFEKGNTQINAAAIQSL 742 (791)
Q Consensus 665 ~~cshL~w~~~--~~~~~d~krVleCLqkslkiA~~~~d~~~~~~~~~~~~~L~veiLn~~ly~~~~~~~~v~~~~in~L 742 (791)
|.||||||+++ ++.++|||||+||||||||||++||| +..+++|||||||+|+|||++||++||+++||+|
T Consensus 637 ytcsHLfW~~~~ngE~l~dGkRVleCLkkAlkIA~qcmd-------~~~~vqLFIEILnrYiYfyek~n~~iti~~I~~L 709 (760)
T KOG1107|consen 637 YTCSHLFWSGRTNGEKLKDGKRVLECLKKALKIAQQCMD-------NLRQVQLFIEILNRYIYFYEKGNDGITIKHIESL 709 (760)
T ss_pred eeeehhhhcccCCccccCchHHHHHHHHHHHHHHHHHHh-------hccchhHHHHHHHHHHhhhhcCCCcccHHHHHHH
Confidence 99999999987 56799999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHhcc-CCCCCChhHHHHHHHHHHHHHHHhhhC-CCCCCCCCCCC
Q 003856 743 IELITAEMQS-ESNSPDPAADAFFASTLRYIQFQKQKG-GAVGEKYEPIK 790 (791)
Q Consensus 743 i~li~~~~~~-~~~~~~~~~~~~f~~t~~yI~~~~~~~-~~~~~r~~~i~ 790 (791)
|++|++|+.+ +.+++.+.+.+||.||++||+-+++++ ++.++.|++|.
T Consensus 710 I~lik~n~~~l~~s~~~d~~~~~~~ntl~~l~l~~es~~~~l~~~ye~~~ 759 (760)
T KOG1107|consen 710 IKLIKTNAKSLKSSNEADLSESFLSNTLETLELIKESVLGALGELYEGII 759 (760)
T ss_pred HHHHHhhhhhccccchhhhhhhHHHHHHHHHHHHhcCccccchhhhhccc
Confidence 9999999988 456667889999999999999999987 44588888875
No 3
>KOG3682 consensus Predicted membrane protein (associated with esophageal cancer in humans) [Function unknown]
Probab=100.00 E-value=1.2e-40 Score=370.92 Aligned_cols=532 Identities=17% Similarity=0.178 Sum_probs=419.3
Q ss_pred HHHHhHHHHHHHhccccHHHHHHHHHHHHHh-hhcCCCCCchhhHHHHHHHHhHHhHHHHHHHHhhcCC----C------
Q 003856 19 GLQQNAFYMHRALDSNNLRDALKYSAQMLSE-LRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGC----S------ 87 (791)
Q Consensus 19 ~Vk~qa~~Mkr~ld~~~l~~ALkhas~mL~E-LRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~g~----~------ 87 (791)
.|-+++--.+++-..++-.+++|.....-+- |-|+.+ .+|+.-|+.++|.|+.+|+.++++++... +
T Consensus 145 rI~el~~~~~~Aw~~d~~v~~lK~~i~~~kLl~dt~v~--~fyp~~fV~~td~ld~fG~iv~eRi~~k~~~d~~~~~~~~ 222 (930)
T KOG3682|consen 145 RILELSTKSIRAWSLDNTVENLKSDISSFKLLLDTFVA--WFYPRAFVALTDKLDEFGMIVVERIRLKSLSDEKNLKNVK 222 (930)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHhhhhhhhhccchhHH--hhccceeEeeehhhHHHhHHHHHHHHHHhhhhhhhhhhhh
Confidence 3555555566666667777777766444443 345555 99999999999999999999999986621 0
Q ss_pred ------------------hhhHHHHHHH-------------hcchhhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhc
Q 003856 88 ------------------IIDLYELVQH-------------AGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRG 136 (791)
Q Consensus 88 ------------------l~dLYE~VQy-------------agnIvPRLYLmItVG~~yi~~~~~p~~eiLkDLvEMcRG 136 (791)
-.++.|..-- .....||-||+.+|..|+-|+-...++|.|.+|+-|.||
T Consensus 223 ~~~~~~l~~~~~lit~f~~e~~~esfk~~c~~~~~f~~i~~~~elyp~~ylea~Il~c~~fL~~~~~~e~l~RL~~m~rg 302 (930)
T KOG3682|consen 223 KASQRFLILRENLITAFGREDRVESFKIVCESANLFQSIPPQSELYPYYYLEAIILDCFGFLLYLLAKENLARLSAMFRG 302 (930)
T ss_pred hhHHHHHHHHHhhhhhcChhhhhhHHHHHHhChHhHhccCchhhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhc
Confidence 1233443331 235899999999999999999987789999999999999
Q ss_pred ccchhHHHHHHHHHHhhhhccCCCCCCCCCCCCCChhhhHHHHHHhHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHh
Q 003856 137 IQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLV 216 (791)
Q Consensus 137 VQhPlRGLFLR~YL~q~~k~~LP~~~s~~~~~~g~v~dsi~Fll~NF~EMNKLWVRlQhqg~~rer~~R~~ER~eL~iLV 216 (791)
.|+|+..+|+|+|+++++...-|.. .|+++.++-.++.-|...|-
T Consensus 303 ~~dPlvs~yar~y~~~~~~~i~~~~-------~~yL~k~~~d~l~~f~~~~~---------------------------- 347 (930)
T KOG3682|consen 303 EQDPLVSDYARNYFLKLSEIIDIPI-------RFYLEKSMIDCLKFFDAANL---------------------------- 347 (930)
T ss_pred cCCchHHHHHHHHHHHHhhhcCcch-------HHHHHHHHHHHHHHHHHHhH----------------------------
Confidence 9999999999999999998765543 45677766666656655432
Q ss_pred hhchhhhhhhcCCCHHHHhhhcchHHHHHHHhccchhhhhHHHhHhHhhCCchhhHhhHHHHHhhcccCCCCCCHHHHHH
Q 003856 217 GKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLS 296 (791)
Q Consensus 217 G~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~c~D~~AQeYLmd~IiQvFPDefHl~TL~~lL~~~~~l~~~V~i~~Il~ 296 (791)
.+ +.|++-.-|.+.+.|...+-|++ +|+|.|++---|.+-|..-+.+-+++ |=||..+++
T Consensus 348 d~-~e~~~i~~~~~~~~l~sL~~pa~-------------~~i~~cl~~~~~~~~~~~~l~~~~~~------g~nv~~lLh 407 (930)
T KOG3682|consen 348 DI-LERLAIMCSQFNDDLSSLFAPAH-------------ITIYSCLIDPLNRTPHWRVLHDWMQA------GKNVMELLH 407 (930)
T ss_pred HH-HhhhhhhhcccchhhhhhccHHH-------------HHHHHHhhccccccchHHHHHHHHhc------CccHHHHHH
Confidence 22 44555667888999999999977 69999999999999988655443332 223777888
Q ss_pred HHHHHHHHH-H------------hhccCCCc------------------hhhhHHHHHHHHHHHHHHHhhcCCCChhhHH
Q 003856 297 RLMERLSNY-A------------ASSTEVLP------------------EFLQVEAFSKLNNAIGKVIEAQADMPILGAV 345 (791)
Q Consensus 297 sLi~RL~~y-~------------~~~~~~i~------------------~~~~~~lF~~f~~~i~~l~~~~~~l~~~d~i 345 (791)
+++.-|+.- + .+.+.|.| +++...+.+..|..+.++-+ ++||+
T Consensus 408 ~~~t~l~~e~~~~~sm~~v~mI~~c~~~gf~~vl~~r~Lg~~l~~~~p~e~~lssli~evw~~v~~~~n------~qdyv 481 (930)
T KOG3682|consen 408 RKKTSLADERKEAVSMQGVSMIVQCVAHGFHTVLDLRPLGAYLRKTSPLEEKLSSLITEVWMRVADISN------FQDYV 481 (930)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhcCchhhHhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhcC------HHHHH
Confidence 888777732 2 12222322 23445677888988888875 99999
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhhhhHHHHHcCCCchHHHhcCCch
Q 003856 346 TLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDSE 425 (791)
Q Consensus 346 ~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vL~l~~f~~Ll~~l~~~ 425 (791)
.|.++|+++..++|..+ +||++|.+++.+++.+.. .++.+.+|++++.+-+.|+.|+..++.+++|.+++|++.++
T Consensus 482 ~c~~awv~y~~k~~t~~--ev~~iL~dV~~~~r~d~~--~ee~~a~Lq~II~k~l~Hf~d~~~i~~~n~Fi~ilDl~~~~ 557 (930)
T KOG3682|consen 482 DCCAAWVSYITKYYTLK--EVTKILEDVLVRLRIDDQ--TEENTALLQNIIAKFLEHFSDCLDIVTSNSFIKILDLIGYD 557 (930)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCchhc--cchhhHHHHHHHHHHHHHHhhHHHHhhHhhHHHHHHHhccc
Confidence 99999999999999988 999999999999998765 44567789999999999999999999999999999999997
Q ss_pred h-HHHHHHHHHHHHHhcC-ccccCHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHhhhc-CCCHHHHHH
Q 003856 426 T-NKVMAMVIIQSIMKNN-TQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQ-NDDTEEMFK 502 (791)
Q Consensus 426 ~-r~~va~~Il~~~l~~~-~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~~~~~e~~~eq~lv~r~vhli~-~~D~e~q~~ 502 (791)
+ +.+|+..|++.+.++. .+|+|+..++.|++.|++|++. .+... -+|+-+....+||+|+.+++ |.|+|+|++
T Consensus 558 ~~~tsvc~~il~~f~k~~~~~i~D~~~~q~L~evc~tl~da-~~~~~---~ed~kR~~s~LI~~f~~mVdfg~~~eq~L~ 633 (930)
T KOG3682|consen 558 IQSTSVCSRILEIFSKTFTHTISDISACQFLIEVCRTLCDA-YRLEE---SEDVKRAASQLICSFLSMVDFGTNLEQCLE 633 (930)
T ss_pred chhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHH-hhhhh---hhhhHHHHHHHHHHHHHHHhhcccHHHHHH
Confidence 6 7799999999999864 5899999999999999999954 33322 23334778899999999999 999999999
Q ss_pred HHHHHHHHHhccCCccccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHHHHhh----CCCCHHHHH
Q 003856 503 IICTVRKHILTGGPKRLPFTVPPLVFSSLKVLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLY----GVPAPELAL 578 (791)
Q Consensus 503 ~l~~~r~~f~~gg~~ri~~t~p~LV~~~l~~L~~~~~~~~~~~~~~~~~~~~kk~f~fv~~~i~~l~----~~~~~~~~l 578 (791)
|+++||..|++..+ .+..||.+.++ ||.+.++. -||...||+.|++.+. ++..|..++
T Consensus 634 f~vecRe~f~~~~~-----~li~LI~S~n~-la~~t~K~------------gkK~a~Fvr~Cia~~~~TIPSv~~p~~rl 695 (930)
T KOG3682|consen 634 FIVECREDFGLRQN-----SLIHLIESLNQ-LAHRTQKS------------GKKKADFVRVCIANLSLTIPSVRDPSRRL 695 (930)
T ss_pred HHHHHHHHhcCchH-----HHHHHHHHHHH-HHHHHHHh------------hhhHHHHHHHHHHHhheecccccChhhHh
Confidence 99999999999876 68899999999 99986632 1688999999999982 556899999
Q ss_pred HHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcc-cCcH--HHHHHHHHHHHHHhhccCCCccc
Q 003856 579 RLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEI-SDSR--AQVTAIHLIIGTLQRMHVFGVEN 639 (791)
Q Consensus 579 kLyLq~A~vAd~~~~~~iaYeFf~qAf~iyEE~i-~ds~--~Q~~al~~ii~tL~~~~~~~~e~ 639 (791)
+|||++|++|-..|+-+.+.+|+..|++..+|-. .|.. .-...+.-.|..+.++-.|-+||
T Consensus 696 nlyl~~~qvaLl~~~lsq~d~~~~~aIeyl~ev~ltdG~ks~~~~~~~~~ic~f~StL~~~P~n 759 (930)
T KOG3682|consen 696 NLYLQNIQVALLANFLSQMDMSSVRAIEYLDEVSLTDGPKSSVCATVSPLICQFLSTLSFCPEN 759 (930)
T ss_pred hhhhHHhHHHHHhChhhhHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHHHHHheeCCCC
Confidence 9999999999999999999999999999998654 3443 23344444555555555554433
No 4
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.2e-12 Score=147.24 Aligned_cols=197 Identities=7% Similarity=-0.160 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHHhHHhHHHHHHHHhhcCCChhhHHHHHHHhcchhhHHHHHHHHHHHH
Q 003856 36 LRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVY 115 (791)
Q Consensus 36 l~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~g~~l~dLYE~VQyagnIvPRLYLmItVG~~y 115 (791)
.+.+++++..+..+.++.-+.|+.|++.|+...+|...|..++..+.-++..+.++|+.+++.+++.|+||..|+++-.+
T Consensus 148 d~~~Fvl~NF~EMNKLWVRmQHqGp~re~ekrekER~ELriLVG~nLvrLsQle~~~~~mY~~~vLp~iLEQvV~CrD~l 227 (760)
T KOG1107|consen 148 DAVEFVLINFTEMNKLWVRMQHQGPSREKEKREKERNELRILVGKNLVRLSQLEGVDLEMYRDDVLPRILEQVVNCRDEL 227 (760)
T ss_pred hHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHHHhhhHHHHHHhccccHHHHhccccHHHHHHHHhhhHHH
Confidence 56688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchHHHHHHHHHHhhcccchhHHHHHHHHHHhhhhccCCCCC--CCCCCCCCChhhhHHHHHHhHHHHHHHHHHH
Q 003856 116 IKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIG--SEYEGDADTVNDAMEFVLQNFTEMNKLWVRM 193 (791)
Q Consensus 116 i~~~~~p~~eiLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LP~~~--s~~~~~~g~v~dsi~Fll~NF~EMNKLWVRl 193 (791)
.+.---.......+...||+|++||++|.+.+++..++++-++|..+ +.|+. .++-.|
T Consensus 228 aQeYLmeciiQvF~DefHLqTLd~~L~ac~~L~~~V~i~~~l~~l~dRLs~y~t-~~~e~~------------------- 287 (760)
T KOG1107|consen 228 AQEYLMECIIQVFPDEFHLQTLDTLLGACPQLQPSVNIKILLIALVDRLSNYAT-SENEVL------------------- 287 (760)
T ss_pred HHHHHHHHhhhccCcHHHHHhHHHHHHHHHhcCCCcchHHHHHHHhhhhhHHHh-ccccCC-------------------
Confidence 99888888888999999999999999999999999999998888753 12210 011111
Q ss_pred hccCCchhhhhHHHHHHHHHHHhhhchhhhhhhcCCCHHHHhhhcchHHHHHHHhccchhhhhHHHhHhHhhCCc
Q 003856 194 QHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPD 268 (791)
Q Consensus 194 Qhqg~~rer~~R~~ER~eL~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~c~D~~AQeYLmd~IiQvFPD 268 (791)
| +..+++|+++++.++.+++...-|.-...-..|.+.+.|.+..+++|.+|++.||||+
T Consensus 288 ----p------------~~~~~~~f~~~~~~~~~vi~~r~dmpl~~~v~L~~sll~~~l~~ypdr~dy~dqvf~~ 346 (760)
T KOG1107|consen 288 ----P------------APLQMEAFEKLSNAITKVIQSRPDMPLDDIVTLYVSLLNFTLKCYPDRLDYADQVFQG 346 (760)
T ss_pred ----c------------hHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHHHHHHHhhHhhcCchHHHHHHHccC
Confidence 1 6677889999999999999999999999999999999999999999999999999999
No 5
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.45 E-value=35 Score=41.38 Aligned_cols=80 Identities=18% Similarity=0.298 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhhhhHHHHHcCCCchHHH
Q 003856 342 LGAVTLYSSLLTFTLHVHP--DRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVM 419 (791)
Q Consensus 342 ~d~i~l~~sll~l~l~~yp--~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vL~l~~f~~Ll 419 (791)
+..++|++-+...-...|. ++-.|+..+.+.+.+.+.+.+...++..+..++++|-.-=.+|+ +-.+.+++.|++.+
T Consensus 273 ~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlktNYQ-L~ELv~v~~Y~e~i 351 (1082)
T KOG1410|consen 273 ELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENPQGLSDPANYHEFCRLLARLKTNYQ-LGELVKVECYPEVI 351 (1082)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCcCCCCcchHHHHHHHHHHHHhhhh-hHhhhccCCcHHHH
Confidence 4556666666655555553 46778889999999999888878888899999999988888885 66678999999988
Q ss_pred hcC
Q 003856 420 EYV 422 (791)
Q Consensus 420 ~~l 422 (791)
.+.
T Consensus 352 rLi 354 (1082)
T KOG1410|consen 352 RLI 354 (1082)
T ss_pred HHH
Confidence 653
No 6
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=62.51 E-value=1.1e+02 Score=33.10 Aligned_cols=57 Identities=19% Similarity=0.150 Sum_probs=36.7
Q ss_pred HhhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 003856 333 IEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLS 397 (791)
Q Consensus 333 ~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~ 397 (791)
+...|++++..|+.+.+++-..+..++ |.++..+---++.+.. ..+..-+.+++++.
T Consensus 193 iA~D~~L~~~kF~~Lae~lP~~aR~~h-------D~LYrAID~YLk~Hp~-ls~~Er~~lC~~ld 249 (258)
T PF03000_consen 193 IAPDPNLKPSKFVALAEALPDSARPSH-------DGLYRAIDIYLKAHPG-LSEEERKRLCRLLD 249 (258)
T ss_pred hcCCCCCCHHHHHHHHHHCCHhhhhcc-------chHHHHHHHHHHHccc-CCHHHHHHHHhhCC
Confidence 335689999999999999988887754 4455544444444432 23334455776653
No 7
>PLN03217 transcription factor ATBS1; Provisional
Probab=51.61 E-value=9.7 Score=34.15 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=36.0
Q ss_pred CCccccHHHHHHHHHHHHHHhccCC---CCCChhHHHHHHHHHHHHHHHhhh
Q 003856 730 GNTQINAAAIQSLIELITAEMQSES---NSPDPAADAFFASTLRYIQFQKQK 778 (791)
Q Consensus 730 ~~~~v~~~~in~Li~li~~~~~~~~---~~~~~~~~~~f~~t~~yI~~~~~~ 778 (791)
|...||.+-|++||...+.-+.... .+......+-.+.||.||+.-...
T Consensus 13 ~s~risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrE 64 (93)
T PLN03217 13 GTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHRE 64 (93)
T ss_pred CCCCCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHH
Confidence 4457999999999999999887632 122234556789999999976443
No 8
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=48.34 E-value=5.5e+02 Score=32.69 Aligned_cols=139 Identities=7% Similarity=0.183 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhhh-hHHHHHcCCCchHHHhcCC--chh-HHHHHHHHHHHHHhcC
Q 003856 367 DQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYN-DIVTVLKLSNYPSVMEYVD--SET-NKVMAMVIIQSIMKNN 442 (791)
Q Consensus 367 d~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~-~~~~vL~l~~f~~Ll~~l~--~~~-r~~va~~Il~~~l~~~ 442 (791)
..++-..+..+...+.........--..+|+..++.-+ ++...+-.--|+++....- .+. -.+.+.+.+.+++...
T Consensus 612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 34444444444433322223333344555555555443 3444556667888876543 333 5688999999998642
Q ss_pred cc-c---cCHH--HHHHHHHHHHHHHhcCCCCCC----------------CCCCh----------------hhHHHHHHH
Q 003856 443 TQ-I---STAD--KVGALFELIKGLIRDLDGAAH----------------DQVDE----------------DDFKEEQNS 484 (791)
Q Consensus 443 ~~-i---~~~~--~v~~ll~~~~~L~~d~~~~~~----------------~~~~~----------------~e~~~eq~l 484 (791)
.. + .+.. .+.-+|.+...|++...+... .+..+ +-..-+|++
T Consensus 692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsL 771 (1005)
T KOG2274|consen 692 LEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSL 771 (1005)
T ss_pred HHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 10 0 0001 133556666666643322211 01111 223348999
Q ss_pred HHHHHhhhcCCCHHHHHHHHHH
Q 003856 485 VARLIQMLQNDDTEEMFKIICT 506 (791)
Q Consensus 485 v~r~vhli~~~D~e~q~~~l~~ 506 (791)
|.-|.|++. .|+++.++||..
T Consensus 772 i~VfahL~~-t~~~~~l~FL~S 792 (1005)
T KOG2274|consen 772 IMVFAHLVH-TDLDQLLNFLSS 792 (1005)
T ss_pred HHHHHHHhh-CCHHHHHHHHHh
Confidence 999999996 578999999987
No 9
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=44.26 E-value=1.9e+02 Score=32.11 Aligned_cols=141 Identities=12% Similarity=0.217 Sum_probs=80.6
Q ss_pred hhhHHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhhhhHHHHHcC--CCchH
Q 003856 341 ILGAVTLYSSLLTFTLHVHPDR-LDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKL--SNYPS 417 (791)
Q Consensus 341 ~~d~i~l~~sll~l~l~~yp~~-~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vL~l--~~f~~ 417 (791)
--+++.++.++++=.-...++. ..-++.+++.+...+.... ...|+....+-++|...+.++- ..++++ +.|..
T Consensus 89 ~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~-~~yPe~r~~ff~LL~~i~~~~f--~~l~~lp~~~f~~ 165 (319)
T PF08767_consen 89 EPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDF-EEYPEHRVNFFKLLRAINEHCF--PALLQLPPEQFKL 165 (319)
T ss_dssp -HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTS-SSSHHHHHHHHHHHHHHHHHHT--HHHHHS-HHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh-hhChHHHHHHHHHHHHHHHHhH--HHHHcCCHHHHHH
Confidence 3455555555555444444443 2335777777777776543 3478888899999999998874 556666 44778
Q ss_pred HHhcCCchhH---HHH---HHHHHHHHHhcCccccCHHHHHHHH---------HHHHHHHhcCCCCCCCCCChhhHHHHH
Q 003856 418 VMEYVDSETN---KVM---AMVIIQSIMKNNTQISTADKVGALF---------ELIKGLIRDLDGAAHDQVDEDDFKEEQ 482 (791)
Q Consensus 418 Ll~~l~~~~r---~~v---a~~Il~~~l~~~~~i~~~~~v~~ll---------~~~~~L~~d~~~~~~~~~~~~e~~~eq 482 (791)
+++.+-|..+ ++| +..++..++++-.. .+++..+.++ ++..+|. |+. -...|....
T Consensus 166 ~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~-~~~~~~~~F~~~y~~~il~~if~vlt-D~~-------Hk~gf~~q~ 236 (319)
T PF08767_consen 166 VIDSIVWGFKHTNREISETGLNILLELLNNVSK-TNPEFANQFYQQYYLDILQDIFSVLT-DSD-------HKSGFKLQS 236 (319)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHH-STT--------GGGHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHH-Ccc-------cHHHHHHHH
Confidence 8877766543 344 44444444433212 4555544443 2223332 211 123577677
Q ss_pred HHHHHHHhhhc
Q 003856 483 NSVARLIQMLQ 493 (791)
Q Consensus 483 ~lv~r~vhli~ 493 (791)
..+++++.++.
T Consensus 237 ~iL~~Lf~~ve 247 (319)
T PF08767_consen 237 QILSNLFRLVE 247 (319)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77788877765
No 10
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=35.29 E-value=3.6e+02 Score=28.49 Aligned_cols=110 Identities=21% Similarity=0.299 Sum_probs=56.1
Q ss_pred HHhHhHhhCCchhhHhhHHHHHhhcc--cCCCC--CCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHH
Q 003856 258 LMDCIIQVFPDEYHLQTLEILLGAFP--QLQPS--VDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVI 333 (791)
Q Consensus 258 Lmd~IiQvFPDefHl~TL~~lL~~~~--~l~~~--V~i~~Il~sLi~RL~~y~~~~~~~i~~~~~~~lF~~f~~~i~~l~ 333 (791)
++..+.+.||+.|+. ||+++. ....+ +++...+...|++|-.-. .+...
T Consensus 105 ~~~~v~~~y~~k~~~-----FL~~i~~~~~~~~~~~d~~~~i~~~I~~f~r~~-------------------~~~~s--- 157 (219)
T PF14677_consen 105 ILSTVCQRYPDKFSQ-----FLSAIDMTDDNAEEEKDLTERIQFQIRQFQREL-------------------ENFLS--- 157 (219)
T ss_dssp HHHHHHHTSGGGHHH-----HHHHTS----STTTT-HHHHHHHHHHHHHHHHH-------------------HHHHH---
T ss_pred HHHHHHHHhhHHHHH-----HHHHhccccCCccccccHHHHHHHHHHHHHHHH-------------------hhccc---
Confidence 345678899998764 999764 22222 355555555555553211 11111
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 003856 334 EAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALL 396 (791)
Q Consensus 334 ~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL 396 (791)
....+...++++.++..+-.|+-..-|+.. ..+.++.-+.+.+++.. ..++...+.|++||
T Consensus 158 ~~~e~~~~K~~~~Lv~ils~L~~~l~~~s~-~~~q~~~W~~~~ck~~~-l~d~~~~k~ll~lL 218 (219)
T PF14677_consen 158 SEEEDFNSKEAVLLVNILSQLSDHLDPSSD-QFTQMLSWTLKFCKENS-LEDSSFCKGLLSLL 218 (219)
T ss_dssp S--SS--SHHHHHHHHHHHHHTTSS-SSSS-HHHHHHHHHHHHHHS----S-HHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHh
Confidence 111233455666666666666666667654 34477777777777653 23444445555554
No 11
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=33.36 E-value=39 Score=35.48 Aligned_cols=72 Identities=26% Similarity=0.459 Sum_probs=50.7
Q ss_pred HHHHHHHhHHhHHHHHHHHhhc----C--CChhhHHHHHHHhcchhhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhc
Q 003856 63 LYMRAFDELRKLEMFFKEETRR----G--CSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRG 136 (791)
Q Consensus 63 LYm~V~d~L~~L~~yl~~~~~~----g--~~l~dLYE~VQyagnIvPRLYLmItVG~~yi~~~~~p~~eiLkDLvEMcRG 136 (791)
+++..+++|+.|.+||...+.+ | -.++|+ +++||||-+=+++.-|.-- +.|. + -+|
T Consensus 124 ~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDc--------sLlPKL~~i~va~k~yk~~-~IP~-~--------lt~ 185 (221)
T KOG1422|consen 124 LEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADC--------SLLPKLHHIKVAAKHYKNF-EIPA-S--------LTG 185 (221)
T ss_pred HHHHHHHHHHHHHHHhcCccCCccccCCeeeeehh--------hhchhHHHHHHHHHHhcCC-CCch-h--------hhH
Confidence 3577889999999999985433 3 367888 9999999999999988643 3443 1 356
Q ss_pred ccchhHHHHHHHHHHh
Q 003856 137 IQHPVRGLFLRSYLSQ 152 (791)
Q Consensus 137 VQhPlRGLFLR~YL~q 152 (791)
|-.=+.++|.|-=+-+
T Consensus 186 V~rYl~~~ya~d~F~~ 201 (221)
T KOG1422|consen 186 VWRYLKNAYARDEFTN 201 (221)
T ss_pred HHHHHHHHHhHHHhhc
Confidence 6666666666654433
No 12
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=30.00 E-value=7e+02 Score=26.52 Aligned_cols=142 Identities=18% Similarity=0.240 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhhhhHHHHHcCCCchHHHhcCCchhHHHHHHHHHHHHHhc-Ccccc
Q 003856 368 QVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKN-NTQIS 446 (791)
Q Consensus 368 ~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vL~l~~f~~Ll~~l~~~~r~~va~~Il~~~l~~-~~~i~ 446 (791)
.|++.|++.+...+- ..+...+++.+|..=+.+++ .+.=.+++..+++.+-.. .....
T Consensus 7 ~v~~~~l~~l~~~~l--~~k~~~dii~~L~~El~~lp-------------------~~~Lv~l~~~~v~~i~~g~~~~~~ 65 (223)
T PF14675_consen 7 KVYKCCLKLLESGDL--SEKQASDIIGRLMLELHSLP-------------------GEHLVELAELCVDSIRSGDNKNGK 65 (223)
T ss_dssp HHHHHHHHHHHHS-----HHHHHHHHHHHHHHGGG---------------------HHHHHHHHHHHHHHHHS---S-ST
T ss_pred HHHHHHHHHcccCCc--CHHHHHHHHHHHHHhcCCCC-------------------HHHHHHHHHHHHHHHHcCCcccch
Confidence 456666666654332 33444455555544444442 344466777777776432 12233
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHH-----------HHHHHHHHhhhc--CCCHHHHHHHHHHHHHHHhc
Q 003856 447 TADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEE-----------QNSVARLIQMLQ--NDDTEEMFKIICTVRKHILT 513 (791)
Q Consensus 447 ~~~~v~~ll~~~~~L~~d~~~~~~~~~~~~e~~~e-----------q~lv~r~vhli~--~~D~e~q~~~l~~~r~~f~~ 513 (791)
..+-+=.+|..++.- +......++...+|+... .+.+..++.+++ .=+.+..-.+...+-+.+.+
T Consensus 66 ~ldLlP~~Ls~L~~~--~~i~~~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd~~Ls~~e~~~vv~Kv~~~l~~ 143 (223)
T PF14675_consen 66 WLDLLPKCLSALSAS--ESINYNGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRDVPLSKEELEFVVEKVLSMLKK 143 (223)
T ss_dssp TTTHHHHHHHHHHT---S--SSSS----HHHHHHHHHHHHHHS---TTTHHHHHHHGGGS---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC--cccccccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc
Confidence 333333333332222 111111112223344211 123334445555 33567777777778888888
Q ss_pred cCCccccccchHHHHHHHHHHHHH
Q 003856 514 GGPKRLPFTVPPLVFSSLKVLVRQ 537 (791)
Q Consensus 514 gg~~ri~~t~p~LV~~~l~~L~~~ 537 (791)
.++. -+||||++.+. |+.+
T Consensus 144 l~l~----elPpLvyQLL~-Lssk 162 (223)
T PF14675_consen 144 LDLQ----ELPPLVYQLLL-LSSK 162 (223)
T ss_dssp S-GG----GHHHHHHHHHH-HHTT
T ss_pred CChh----hccHHHHHHHH-Hhhc
Confidence 8765 79999999999 8863
No 13
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=29.55 E-value=2.1e+02 Score=25.30 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcC
Q 003856 319 VEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSG 379 (791)
Q Consensus 319 ~~lF~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~ 379 (791)
..++ ...++..++++ .+++|+|++.+..+.+. ..+|+-.+.+..-|.+..+.+..
T Consensus 18 ~~L~-~~~~~~r~~i~--~~I~PEeIv~iH~~~v~---~l~~~~~~~v~~sld~LlEvm~~ 72 (77)
T PF08673_consen 18 QSLY-QAQEFGRELIE--KDISPEEIVEIHKSAVQ---ELSPSLPEDVLDSLDFLLEVMIG 72 (77)
T ss_dssp HHHH-HHHHHHHHHHH--TT--HHHHHHHHHHHHH---HH-TTS-HHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHH--cCCCHHHHHHHHHHHHH---HHccccHHHHHHHHHHHHHHHHH
Confidence 4566 77888888988 48999999999988776 55666566777777777666543
No 14
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=26.43 E-value=3.5e+02 Score=24.87 Aligned_cols=52 Identities=19% Similarity=0.359 Sum_probs=44.3
Q ss_pred hhhhhhhcCCCHHHHhhhcchHHHHHHHhccchhhhhHHHhHhHhhCCchhhH
Q 003856 220 LHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHL 272 (791)
Q Consensus 220 LvrLSqLegv~~~~Y~~~iLP~iLeqIv~c~D~~AQeYLmd~IiQvFPDefHl 272 (791)
+..+.--+|-+++.|-..+-- |..++-.|+.++.-+.+...|+..+|++|+-
T Consensus 32 l~~~k~~~~~sv~~y~~~~~~-i~~~L~~~g~~i~d~~~v~~iL~~Lp~~y~~ 83 (119)
T PF14223_consen 32 LENLKMKDGESVDEYISRLKE-IVDELRAIGKPISDEDLVSKILRSLPPSYDT 83 (119)
T ss_pred HHHHHhcccccHHHHHHHHHH-hhhhhhhcCCcccchhHHHHHHhcCCchhHH
Confidence 444554578899999998775 7799999999999999999999999999965
No 15
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.32 E-value=1.6e+03 Score=29.09 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHH
Q 003856 481 EQNSVARLIQMLQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKVLVR 536 (791)
Q Consensus 481 eq~lv~r~vhli~~~D~e~q~~~l~~~r~~f~~gg~~ri~~t~p~LV~~~l~~L~~ 536 (791)
.-..+.|.+|++.+.+...++++|-.++--+.=.- --.-++-|+|+.+|..++.
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La--~~~n~LlPlvhq~W~~vie 854 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLA--TYHNLLLPLVHQTWPSVIE 854 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHh--ccchhHhHHHHhhhhHHHH
Confidence 34567899999999999999998887764332111 0112677899999993333
No 16
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=23.41 E-value=1.3e+02 Score=25.91 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhc-CCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 003856 323 SKLNNAIGKVIEAQ-ADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLG 371 (791)
Q Consensus 323 ~~f~~~i~~l~~~~-~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~ 371 (791)
+.|++.+.+.++.+ +.+++.+.+.+.-|+.- +.+||.+ ++++||+
T Consensus 19 ~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~--l~~~p~~--~l~~vf~ 64 (71)
T PF06743_consen 19 EEFFEKLIERLESYLDEFSPEDLLDLVWSLCL--LQRFPED--LLNKVFS 64 (71)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH--HhhCCHH--HHHHHcC
Confidence 34455555555555 78899999999988864 5788875 8888875
No 17
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=22.63 E-value=81 Score=24.47 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=20.8
Q ss_pred HhHhHhhCCchhhHhhHHHHHhhcc
Q 003856 259 MDCIIQVFPDEYHLQTLEILLGAFP 283 (791)
Q Consensus 259 md~IiQvFPDefHl~TL~~lL~~~~ 283 (791)
+|.+..+||. -.-.+|+.+|..|.
T Consensus 5 idiL~rvFP~-~kr~~Le~iL~~C~ 28 (39)
T PF03474_consen 5 IDILTRVFPH-QKRSVLELILQRCN 28 (39)
T ss_pred HHHHHHHCCC-CChHHHHHHHHHcC
Confidence 4788999998 67789999999996
No 18
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=22.40 E-value=1.4e+02 Score=29.75 Aligned_cols=45 Identities=24% Similarity=0.430 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhhc-CCCCCchhhHHHHHH----HHhHHhHHHHHHHH
Q 003856 37 RDALKYSAQMLSELRT-SKLSPQKYYQLYMRA----FDELRKLEMFFKEE 81 (791)
Q Consensus 37 ~~ALkhas~mL~ELRt-s~LsPk~YYeLYm~V----~d~L~~L~~yl~~~ 81 (791)
|.-+.---.+|.+||. ..+.|..|-+||+++ |...++|-+|+.+.
T Consensus 96 i~~IRalR~~Lr~lrd~gkIdk~~YR~lY~~aKGg~fk~~~~L~~~i~~~ 145 (150)
T COG2147 96 IKRIRALRRELRKLRDDGKIDKHTYRKLYRMAKGGAFKSKSHLKSYIEEA 145 (150)
T ss_pred HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCccccHHHHHHHHHHh
Confidence 3444445568888875 789999999999997 88899999998874
No 19
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=21.41 E-value=2.8e+03 Score=31.09 Aligned_cols=112 Identities=17% Similarity=0.274 Sum_probs=62.1
Q ss_pred HhHhHhhCCchhhHh---hHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHhh
Q 003856 259 MDCIIQVFPDEYHLQ---TLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEA 335 (791)
Q Consensus 259 md~IiQvFPDefHl~---TL~~lL~~~~~l~~~V~i~~Il~sLi~RL~~y~~~~~~~i~~~~~~~lF~~f~~~i~~l~~~ 335 (791)
+.+++-+-|-++-.. .+.-+++.|.+- ...++-..++.++.|+-+-.....+... -....++..||+.+.++.+.
T Consensus 1958 l~~v~~~~~~~~i~~n~~~vq~~le~cl~~-~~~~v~~~~~~~l~~~~~~~~~~~~e~e-~~~~~v~~~i~~~l~s~~~~ 2035 (3550)
T KOG0889|consen 1958 LSVVLENVPKEWIRENLNQIQALLEKCLKS-GNLKVTEALNQLLSRLLSIFPNTHESLE-LLYQVVSKLIDELLTSVTTV 2035 (3550)
T ss_pred HHHHHhcCCcHHHHHhHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHhcCCCchhHH-HHhhHHHHHHHhhhhheecc
Confidence 455555555555443 345566777643 5566666666666666432221111101 11356788899999888874
Q ss_pred cCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 003856 336 QADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKL 377 (791)
Q Consensus 336 ~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l 377 (791)
. ..-...+.+.+-+.-.+..++.+|+|.++....+-+
T Consensus 2036 ~-----~~~~~~~~~~~~~l~~~~~~~~~~~drLl~~~~r~~ 2072 (3550)
T KOG0889|consen 2036 P-----LQLASNVFGTLTLLKTLCSNNPDYLDRLLPGFMRCF 2072 (3550)
T ss_pred c-----ccchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 2 222222222444445566777789998887655433
Done!