Query 003856
Match_columns 791
No_of_seqs 136 out of 232
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:17:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r17_C Vacuolar protein sortin 100.0 4.6E-91 1.6E-95 741.4 20.3 289 477-775 1-298 (298)
2 3ro3_A PINS homolog, G-protein 78.6 24 0.00083 30.4 11.9 135 556-698 27-161 (164)
3 3ro3_A PINS homolog, G-protein 57.5 89 0.003 26.6 14.3 120 573-700 4-123 (164)
4 3q15_A PSP28, response regulat 57.3 1.8E+02 0.0061 30.0 15.3 122 573-701 136-257 (378)
5 3gw4_A Uncharacterized protein 50.0 1.5E+02 0.005 26.9 15.4 138 556-701 44-182 (203)
6 3edt_B KLC 2, kinesin light ch 42.6 2.2E+02 0.0076 26.8 16.5 142 593-749 16-160 (283)
7 3ro2_A PINS homolog, G-protein 35.6 3.1E+02 0.01 26.4 18.5 220 494-748 56-295 (338)
8 3u3w_A Transcriptional activat 35.6 3.3E+02 0.011 26.8 19.4 136 556-701 133-272 (293)
9 3ulq_A Response regulator aspa 33.7 4E+02 0.014 27.2 22.1 116 579-701 144-259 (383)
10 1qqe_A Vesicular transport pro 33.0 3.7E+02 0.013 26.6 12.6 113 574-697 33-149 (292)
11 2ifu_A Gamma-SNAP; membrane fu 32.8 3.9E+02 0.013 26.7 14.4 112 573-697 31-146 (307)
12 4a1s_A PINS, partner of inscut 32.5 4.2E+02 0.014 27.0 16.0 138 556-701 241-378 (411)
13 3ulq_A Response regulator aspa 32.2 4.2E+02 0.015 27.0 22.8 185 492-701 114-299 (383)
14 1bl1_A Parathyroid hormone rec 30.2 14 0.00047 26.1 0.5 15 100-114 15-29 (31)
15 3q15_A PSP28, response regulat 29.7 4.7E+02 0.016 26.7 20.0 200 479-699 10-215 (378)
16 1w53_A Phosphoserine phosphata 27.0 1.9E+02 0.0065 24.9 7.2 55 320-379 25-79 (84)
17 4ap2_B Cullin-3, CUL-3; ubiqui 23.0 7.4E+02 0.025 26.8 19.2 62 32-105 26-93 (410)
18 3zth_A STU0660; DNA binding, c 22.0 68 0.0023 34.3 4.2 116 242-358 86-229 (350)
19 2j6y_A Phosphoserine phosphata 21.8 2.5E+02 0.0084 25.5 7.2 56 320-380 25-80 (111)
20 3ut4_A CTHE_2751, putative unc 21.4 2.2E+02 0.0075 26.6 7.1 46 233-280 57-102 (134)
21 3nf1_A KLC 1, kinesin light ch 21.1 5.4E+02 0.019 24.5 16.6 198 524-748 24-227 (311)
No 1
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.6e-91 Score=741.39 Aligned_cols=289 Identities=42% Similarity=0.708 Sum_probs=268.6
Q ss_pred hHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhH
Q 003856 477 DFKEEQNSVARLIQMLQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKVLVRQLQGPEENPFGEEGSTTPKK 556 (791)
Q Consensus 477 e~~~eq~lv~r~vhli~~~D~e~q~~~l~~~r~~f~~gg~~ri~~t~p~LV~~~l~~L~~~~~~~~~~~~~~~~~~~~kk 556 (791)
||.+||++|||+||+++++|||+||++|..+|++|++||++|++||+|||||++|+ |+|+++..+..++.|+ ..+++
T Consensus 1 ef~eeQ~~varliHli~~~d~d~~f~il~~~rk~~~~gg~~Ri~~TlPpLvf~~l~-L~r~~~~~~~~d~~~~--~~~~k 77 (298)
T 2r17_C 1 DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQ-LAFRYKENSKVDDKWE--KKCQK 77 (298)
T ss_dssp CTTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHH-HHHHHHTTTTTCSSHH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccceeecccHHHHHHHH-HHHHHHhcccchhhHH--HHHHH
Confidence 47889999999999999999999999999999999999999999999999999999 9999987654333332 34589
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCC---ccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhcc
Q 003856 557 VFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDL---EPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMH 633 (791)
Q Consensus 557 ~f~fv~~~i~~l~~~~~~~~~lkLyLq~A~vAd~~~~---~~iaYeFf~qAf~iyEE~i~ds~~Q~~al~~ii~tL~~~~ 633 (791)
+|+|||++|+.|...+.|+++|||||+||++||++|+ +++|||||+|||+||||+|+|||+|++||.+|||||+++|
T Consensus 78 if~fv~~~i~~L~~~~~~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~ 157 (298)
T 2r17_C 78 IFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMK 157 (298)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHcc
Confidence 9999999999995446799999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCC-----CCCCCcchhHHHHHHHHHHHHHHHHHHhhhccCC
Q 003856 634 VFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVD-----DQDNMKDGERVLLCLKRALRIANAAQQMSNATRG 708 (791)
Q Consensus 634 ~~~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~-----~~~~~~d~krVleCLqkslkiA~~~~d~~~~~~~ 708 (791)
+|++||||+|+||||+||||||||||||||||+||||||++ +++.+||||||+|||||||||||+|||
T Consensus 158 ~f~~enye~L~tk~t~~askLLKK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d------- 230 (298)
T 2r17_C 158 CFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD------- 230 (298)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCC-------
T ss_pred CCCHhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhC-------
Confidence 99999999999999999999999999999999999999984 234689999999999999999999999
Q ss_pred CCccHhhHHHHHhhhhhhhccCCccccHHHHHHHHHHHHHHhcc-CCCCCChhHHHHHHHHHHHHHHH
Q 003856 709 STGSVTLFVEILNKYLYFFEKGNTQINAAAIQSLIELITAEMQS-ESNSPDPAADAFFASTLRYIQFQ 775 (791)
Q Consensus 709 ~~~~~~L~veiLn~~ly~~~~~~~~v~~~~in~Li~li~~~~~~-~~~~~~~~~~~~f~~t~~yI~~~ 775 (791)
+.++++|||||||+|+|||++||++||++||||||++|++|+.+ +++++.++++.||+||++||+.|
T Consensus 231 ~~~~v~LfveILn~ylyff~~g~~~Vt~~~in~LI~lI~~~l~~~~~~~~~~~~~~~f~~tl~yI~~~ 298 (298)
T 2r17_C 231 PSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR 298 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCTTSCHHHHHHHHHHHHTTTTSSCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred hhhHHHHHHHHHHHHHhhhhCCCCcccHHHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999976 44556789999999999999854
No 2
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=78.59 E-value=24 Score=30.39 Aligned_cols=135 Identities=11% Similarity=0.076 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCC
Q 003856 556 KVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVF 635 (791)
Q Consensus 556 k~f~fv~~~i~~l~~~~~~~~~lkLyLq~A~vAd~~~~~~iaYeFf~qAf~iyEE~i~ds~~Q~~al~~ii~tL~~~~~~ 635 (791)
+-.++....+........+......+..-|.+....|--+-|.++|.+|+.++++. .+...+..+...+.........+
T Consensus 27 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 105 (164)
T 3ro3_A 27 DAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDY 105 (164)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHhhH
Confidence 33444444444442223455556677777777777888888889999999999753 55555555555544444343221
Q ss_pred CccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 003856 636 GVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANA 698 (791)
Q Consensus 636 ~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~ 698 (791)
+.-.....++...+.+.-..+..+.+...-+.+++.. .+.+...+++++|++++.+
T Consensus 106 --~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 106 --EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL-----GNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHHHHH
Confidence 1122222333333333333455566666666666633 3578899999999998864
No 3
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=57.54 E-value=89 Score=26.58 Aligned_cols=120 Identities=14% Similarity=0.075 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHH
Q 003856 573 APELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSA 652 (791)
Q Consensus 573 ~~~~~lkLyLq~A~vAd~~~~~~iaYeFf~qAf~iyEE~i~ds~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~as 652 (791)
++......+..-|.+.-..|--+-|-+.|.+|+.++++ ..+......+...+.........+ +.-.....++...+.
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERIAYSNLGNAYIFLGEF--ETASEYYKKTLLLAR 80 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHH
Confidence 45555666777777776777777788889999998885 455555555555555444443222 111222333333333
Q ss_pred hccCchhhHHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 003856 653 KLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQ 700 (791)
Q Consensus 653 kLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~ 700 (791)
+.-..+.++.+.+.-+.+++.. .+.+...++++++++++...-
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~~~~~ 123 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTLL-----QDYEKAIDYHLKHLAIAQELK 123 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCcHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHcc
Confidence 3333344566666666666633 457889999999999987653
No 4
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=57.28 E-value=1.8e+02 Score=30.01 Aligned_cols=122 Identities=11% Similarity=0.089 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHH
Q 003856 573 APELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSA 652 (791)
Q Consensus 573 ~~~~~lkLyLq~A~vAd~~~~~~iaYeFf~qAf~iyEE~i~ds~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~as 652 (791)
.+...-..|..-|.+-...|.-+-|.+++.+|+.++++.-........+...+.........+. .-...-.++...+.
T Consensus 136 ~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~--~A~~~~~~al~~~~ 213 (378)
T 3q15_A 136 DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYD--KALPHLEAALELAM 213 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHH
Confidence 3444555666667777777888888899999999998644334445555555544444433321 11122223333333
Q ss_pred hccCchhhHHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 003856 653 KLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 701 (791)
Q Consensus 653 kLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 701 (791)
+.=..+..+.+...-+.++... .+-..-++++++|++++....+
T Consensus 214 ~~~~~~~~~~~~~~lg~~y~~~-----~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 214 DIQNDRFIAISLLNIANSYDRS-----GDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHCG
T ss_pred HcCCHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHhhCC
Confidence 3322334455555556666532 4578889999999998877654
No 5
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=50.01 E-value=1.5e+02 Score=26.85 Aligned_cols=138 Identities=10% Similarity=-0.042 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcH-HHHHHHHHHHHHHhhccC
Q 003856 556 KVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSR-AQVTAIHLIIGTLQRMHV 634 (791)
Q Consensus 556 k~f~fv~~~i~~l~~~~~~~~~lkLyLq~A~vAd~~~~~~iaYeFf~qAf~iyEE~i~ds~-~Q~~al~~ii~tL~~~~~ 634 (791)
+-..+..+.+........+......+..-|.+....|-.+-|.++|.+|+.+++ ...|.. ....++..+..+......
T Consensus 44 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~ 122 (203)
T 3gw4_A 44 EARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALHFGD 122 (203)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCccHHHHHHHHHHHHHHHHHhCC
Confidence 445555665655544345566667777777888788888888899999999998 555443 445555554444444322
Q ss_pred CCccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 003856 635 FGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 701 (791)
Q Consensus 635 ~~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 701 (791)
+ +.-.....+....+.+.=.....+.+...-+.+++.. .+.....+++++|++++...-+
T Consensus 123 ~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~ 182 (203)
T 3gw4_A 123 L--AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE-----KNLLEAQQHWLRARDIFAELED 182 (203)
T ss_dssp H--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC-----cCHHHHHHHHHHHHHHHHHcCC
Confidence 1 1122222333333333333444566666667777643 3578899999999999987655
No 6
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=42.65 E-value=2.2e+02 Score=26.79 Aligned_cols=142 Identities=14% Similarity=0.088 Sum_probs=83.8
Q ss_pred CccHHHHHHHHHHHhchhccc-CcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHhc--cCchhhHHHHHHhhh
Q 003856 593 LEPVAYEFFTQAYILYEEEIS-DSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKL--LKKPDQCRAVYACSH 669 (791)
Q Consensus 593 ~~~iaYeFf~qAf~iyEE~i~-ds~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~askL--LkK~dQcrav~~csh 669 (791)
-.+-|-++|.+|+.+++.... +......++..+.........+. .-.....++...+.+. -..++.+++...-+.
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK--EAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHH--HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 344566889999999987664 33555666666555554433321 1222222333333333 334677777777788
Q ss_pred hcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCccHhhHHHHHhhhhhhhccCCccccHHHHHHHHHHHHHH
Q 003856 670 LFWVDDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFEKGNTQINAAAIQSLIELITAE 749 (791)
Q Consensus 670 L~w~~~~~~~~d~krVleCLqkslkiA~~~~d~~~~~~~~~~~~~L~veiLn~~ly~~~~~~~~v~~~~in~Li~li~~~ 749 (791)
+++.. .+-+..+++++++++++..... +. .-....-..+....|+..|...=..+++...+++.+..
T Consensus 94 ~~~~~-----g~~~~A~~~~~~al~~~~~~~~-------~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 94 LYGKR-----GKYKEAEPLCKRALEIREKVLG-------KF-HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp HHHTT-----TCHHHHHHHHHHHHHHHHHHHC-------TT-CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-----ccHHHHHHHHHHHHHHHHHHcC-------CC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 87744 4678999999999999887754 21 11111222344455566666666666777777765443
No 7
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=35.64 E-value=3.1e+02 Score=26.39 Aligned_cols=220 Identities=10% Similarity=-0.033 Sum_probs=109.4
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHHHHhhCCCC
Q 003856 494 NDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKVLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPA 573 (791)
Q Consensus 494 ~~D~e~q~~~l~~~r~~f~~gg~~ri~~t~p~LV~~~l~~L~~~~~~~~~~~~~~~~~~~~kk~f~fv~~~i~~l~~~~~ 573 (791)
..+++.-.+.+..+.+.....+. -|..+..... ++.-..... + ..+-..+....+........
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~-l~~~~~~~g-~---------~~~A~~~~~~al~~~~~~~~ 118 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIGD------QLGEAKASGN-LGNTLKVLG-N---------FDEAIVCCQRHLDISRELND 118 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTC------HHHHHHHHHH-HHHHHHHTT-C---------HHHHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHHhhcccc------cHHHHHHHHH-HHHHHHHcc-C---------HHHHHHHHHHHHHHHHHhcC
Confidence 34666666666666655554442 2333444444 554333211 1 13445555555555432234
Q ss_pred HHHHHHHHHHHHHHhhhCCC--------------------ccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhcc
Q 003856 574 PELALRLYLQCAEAANDSDL--------------------EPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMH 633 (791)
Q Consensus 574 ~~~~lkLyLq~A~vAd~~~~--------------------~~iaYeFf~qAf~iyEE~i~ds~~Q~~al~~ii~tL~~~~ 633 (791)
+......+..-|.+-...|. -+-|.+.+.+|+.++++ ..+......+...+........
T Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~ 197 (338)
T 3ro2_A 119 KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA-LGDRAAQGRAFGNLGNTHYLLG 197 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhC
Confidence 44445555555555544444 44555666666666553 2344444455555444443432
Q ss_pred CCCccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCccH
Q 003856 634 VFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSV 713 (791)
Q Consensus 634 ~~~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d~~~~~~~~~~~~ 713 (791)
.+. .-.....++...+.+.-..+....+.+.-+.+++.. .+.+...++++++++++...-+ +....
T Consensus 198 ~~~--~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~-------~~~~~ 263 (338)
T 3ro2_A 198 NFR--DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL-----GEFETASEYYKKTLLLARQLKD-------RAVEA 263 (338)
T ss_dssp CHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHTTC-------HHHHH
T ss_pred CHH--HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhhcc-------hhHHH
Confidence 221 112222333333333333444455555556665532 3578899999999998876422 11111
Q ss_pred hhHHHHHhhhhhhhccCCccccHHHHHHHHHHHHH
Q 003856 714 TLFVEILNKYLYFFEKGNTQINAAAIQSLIELITA 748 (791)
Q Consensus 714 ~L~veiLn~~ly~~~~~~~~v~~~~in~Li~li~~ 748 (791)
.. ..+....|+..|...=-.++.+..+++...
T Consensus 264 ~~---~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 264 QS---CYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HH---HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 11 123344455666665556666666666544
No 8
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=35.63 E-value=3.3e+02 Score=26.83 Aligned_cols=136 Identities=8% Similarity=-0.059 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCC
Q 003856 556 KVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVF 635 (791)
Q Consensus 556 k~f~fv~~~i~~l~~~~~~~~~lkLyLq~A~vAd~~~~~~iaYeFf~qAf~iyEE~i~ds~~Q~~al~~ii~tL~~~~~~ 635 (791)
+-.++....+...............|..-|.+-...|--+-|.++|.+|+.++++.-.+......++..+..++.+..
T Consensus 133 ~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~-- 210 (293)
T 3u3w_A 133 YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-- 210 (293)
T ss_dssp HHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh--
Confidence 445555555543222233344556667777777777777888899999999987643455555556666555554433
Q ss_pred CccchHHHHHHHHHHHHhcc----CchhhHHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 003856 636 GVENRDTLTHKATGYSAKLL----KKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 701 (791)
Q Consensus 636 ~~e~y~~L~~k~~~~askLL----kK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 701 (791)
+|+. +......|-++. .......+.+.-+..++... ++-+..++++++|+.+++..-+
T Consensus 211 ---~y~~-A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g----~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 211 ---RYEE-SLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE----YEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp ---CHHH-HHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHH-HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHhCC
Confidence 3332 222222233222 22334666666676666331 1237899999999999996543
No 9
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=33.66 E-value=4e+02 Score=27.19 Aligned_cols=116 Identities=13% Similarity=0.139 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHhccCch
Q 003856 579 RLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKP 658 (791)
Q Consensus 579 kLyLq~A~vAd~~~~~~iaYeFf~qAf~iyEE~i~ds~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~askLLkK~ 658 (791)
..|..-|.+-...|.-+-|.++|.+|+.++++.-........++..+.........+. .-...-.++...+.+.=..+
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~ 221 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYE--DAISHFQKAYSMAEAEKQPQ 221 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHcCChH
Confidence 3344444444445677778889999999999663325555566666555554433321 11222223333333332344
Q ss_pred hhHHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 003856 659 DQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 701 (791)
Q Consensus 659 dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 701 (791)
..+.+...-+.+++.. .+-..-++++++|++++...-+
T Consensus 222 ~~~~~~~~lg~~y~~~-----g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 222 LMGRTLYNIGLCKNSQ-----SQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHhhcc
Confidence 4555666666666633 4678889999999998766543
No 10
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=33.01 E-value=3.7e+02 Score=26.61 Aligned_cols=113 Identities=12% Similarity=0.023 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHh
Q 003856 574 PELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAK 653 (791)
Q Consensus 574 ~~~~lkLyLq~A~vAd~~~~~~iaYeFf~qAf~iyEE~i~ds~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~ask 653 (791)
.+.+..+|-++|.+-...|--+-|.+.|.+|+.++++ ..+......++..+...+.... +|+. +..+-..|.+
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~g-----~~~~-A~~~~~~Al~ 105 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKK-AGNEDEAGNTYVEAYKCFKSGG-----NSVN-AVDSLENAIQ 105 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTT-----CHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHCC-----CHHH-HHHHHHHHHH
Confidence 6788899999988887788878888999999999874 4455555556665544444432 2222 1222222333
Q ss_pred ccCch----hhHHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHH
Q 003856 654 LLKKP----DQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIAN 697 (791)
Q Consensus 654 LLkK~----dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~ 697 (791)
+..+. ....+...-+.++... ..+...-++|+++|+++..
T Consensus 106 l~~~~g~~~~~a~~~~~lg~~~~~~----lg~~~~A~~~~~~Al~~~~ 149 (292)
T 1qqe_A 106 IFTHRGQFRRGANFKFELGEILEND----LHDYAKAIDCYELAGEWYA 149 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHH
Confidence 32221 1233333444444421 1457888899999998864
No 11
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=32.82 E-value=3.9e+02 Score=26.72 Aligned_cols=112 Identities=12% Similarity=0.008 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHH
Q 003856 573 APELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSA 652 (791)
Q Consensus 573 ~~~~~lkLyLq~A~vAd~~~~~~iaYeFf~qAf~iyEE~i~ds~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~as 652 (791)
..+.+..+|-++|.+-...|--+-|-+.|.+|..+++. ..+......++..+.........+.+ +..+-..|.
T Consensus 31 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~g~~~~------A~~~~~~Al 103 (307)
T 2ifu_A 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHAN-NRSLFHAAKAFEQAGMMLKDLQRMPE------AVQYIEKAS 103 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCGGG------GHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHH
Confidence 46777777777777766667666677777888877763 34444445555554444433322221 111111222
Q ss_pred hcc---Cch-hhHHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHH
Q 003856 653 KLL---KKP-DQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIAN 697 (791)
Q Consensus 653 kLL---kK~-dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~ 697 (791)
++. ..+ ....+...-+.++.. .+...-++++++|+++..
T Consensus 104 ~l~~~~g~~~~~a~~~~~lg~~~~~------g~~~~A~~~~~~Al~~~~ 146 (307)
T 2ifu_A 104 VMYVENGTPDTAAMALDRAGKLMEP------LDLSKAVHLYQQAAAVFE 146 (307)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHH
Confidence 221 122 223344444445542 356677777777777654
No 12
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=32.46 E-value=4.2e+02 Score=26.98 Aligned_cols=138 Identities=12% Similarity=0.063 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCC
Q 003856 556 KVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVF 635 (791)
Q Consensus 556 k~f~fv~~~i~~l~~~~~~~~~lkLyLq~A~vAd~~~~~~iaYeFf~qAf~iyEE~i~ds~~Q~~al~~ii~tL~~~~~~ 635 (791)
+-.++...++........+......+..-|.+.-..|.-+-|.+.|.+|+.+.++. .+......++..+...+.....+
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL-GEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 44455555555443212344455566666777777787778888999999998854 55555556666655555443322
Q ss_pred CccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 003856 636 GVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 701 (791)
Q Consensus 636 ~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 701 (791)
+.-.....++...+.+.-..+...++.+.-+.+++.. .+.+..++++++|++++++.-+
T Consensus 320 --~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 320 --NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI-----GGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp --HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCCHHHH
T ss_pred --HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHhhccc
Confidence 2222333344444444444555666767777777743 4678999999999999988876
No 13
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=32.22 E-value=4.2e+02 Score=27.01 Aligned_cols=185 Identities=11% Similarity=-0.005 Sum_probs=110.4
Q ss_pred hcCCCHHHHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHHHHhhCC
Q 003856 492 LQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKVLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGV 571 (791)
Q Consensus 492 i~~~D~e~q~~~l~~~r~~f~~gg~~ri~~t~p~LV~~~l~~L~~~~~~~~~~~~~~~~~~~~kk~f~fv~~~i~~l~~~ 571 (791)
....+.+.-++.+..+-+.+.+.+. -|........ ++.-+.... + ..+-.++....+......
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~------~~~~a~~~~~-lg~~~~~~~-~---------~~~A~~~~~~al~~~~~~ 176 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKD------RIEKAEFFFK-MSESYYYMK-Q---------TYFSMDYARQAYEIYKEH 176 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCC------HHHHHHHHHH-HHHHHHHTT-C---------HHHHHHHHHHHHHHHHTC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCC------HHHHHHHHHH-HHHHHHHcC-C---------HHHHHHHHHHHHHHHHhC
Confidence 3455677777777666655554442 1223333344 554333221 1 135566666666665433
Q ss_pred CC-HHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHH
Q 003856 572 PA-PELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGY 650 (791)
Q Consensus 572 ~~-~~~~lkLyLq~A~vAd~~~~~~iaYeFf~qAf~iyEE~i~ds~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~ 650 (791)
.. .......+..-|.+-...|.-+-|-+.|.+|+.++++. .|......++..+.........+ +.-.....++...
T Consensus 177 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~g~~--~~A~~~~~~al~~ 253 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE-KQPQLMGRTLYNIGLCKNSQSQY--EDAIPYFKRAIAV 253 (383)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHH
Confidence 22 44445666666677777788888889999999999855 56665555665544444333221 1122222333333
Q ss_pred HHhccCchhhHHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 003856 651 SAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 701 (791)
Q Consensus 651 askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 701 (791)
+.+.-.+|....+...-+.+++.. .+-+...+++++|++++...-+
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~ 299 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKL-----GKIDKAHEYHSKGMAYSQKAGD 299 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhccchhHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHcCC
Confidence 334444588888888888888844 4678999999999999977544
No 14
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=30.17 E-value=14 Score=26.12 Aligned_cols=15 Identities=33% Similarity=0.549 Sum_probs=12.4
Q ss_pred chhhHHHHHHHHHHH
Q 003856 100 NILPRLYLLCTVGSV 114 (791)
Q Consensus 100 nIvPRLYLmItVG~~ 114 (791)
.+-+|||+|=|||=+
T Consensus 15 e~FeRL~~iYTVGYS 29 (31)
T 1bl1_A 15 EVFDRLGMIYTVGYS 29 (31)
T ss_dssp HHHHSSHHHHHHHHH
T ss_pred HHHhheeeEEEEeee
Confidence 467899999999953
No 15
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=29.68 E-value=4.7e+02 Score=26.72 Aligned_cols=200 Identities=12% Similarity=0.045 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccCC-ccccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHH
Q 003856 479 KEEQNSVARLIQMLQNDDTEEMFKIICTVRKHILTGGP-KRLPFTVPPLVFSSLKVLVRQLQGPEENPFGEEGSTTPKKV 557 (791)
Q Consensus 479 ~~eq~lv~r~vhli~~~D~e~q~~~l~~~r~~f~~gg~-~ri~~t~p~LV~~~l~~L~~~~~~~~~~~~~~~~~~~~kk~ 557 (791)
.+...++-.+-+.|...|.++-.+++.++.+.+.+... ..+.+-+--+-|..-- +...+...+.... .......
T Consensus 10 ~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~-~~~~~~~~~~~~~----~~~~~~~ 84 (378)
T 3q15_A 10 SRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQL-MLDYLEPGKTYGN----RPTVTEL 84 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHH-HHHTCCC------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHhhcCccccccc----ccchHHH
Confidence 34577888888889999999999999999998887642 1111111111111111 1111111110000 0011122
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCc
Q 003856 558 FQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGV 637 (791)
Q Consensus 558 f~fv~~~i~~l~~~~~~~~~lkLyLq~A~vAd~~~~~~iaYeFf~qAf~iyEE~i~ds~~Q~~al~~ii~tL~~~~~~~~ 637 (791)
++- |..........+....|..-|......|--+-|-++|.+|..+.++ +.|......+...+.........
T Consensus 85 l~~----i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~y~~~~~--- 156 (378)
T 3q15_A 85 LET----IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPF-VSDDIEKAEFHFKVAEAYYHMKQ--- 156 (378)
T ss_dssp HHH----HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHH----HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHcCC---
Confidence 222 2222110123455666777788887788888888999999999884 56666666666665555444332
Q ss_pred cchHHHHHHHHHHHHhccCc-----hhhHHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 003856 638 ENRDTLTHKATGYSAKLLKK-----PDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAA 699 (791)
Q Consensus 638 e~y~~L~~k~~~~askLLkK-----~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~ 699 (791)
|+ .+......|-.+.++ +..+.+...-+..+.. ..+-...++++++|++++...
T Consensus 157 --~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~-----~~~~~~A~~~~~~al~~~~~~ 215 (378)
T 3q15_A 157 --TH-VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD-----FKHYDKALPHLEAALELAMDI 215 (378)
T ss_dssp --HH-HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHT
T ss_pred --cH-HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHc
Confidence 22 233333344444433 2344444444444542 345788999999999998654
No 16
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=26.95 E-value=1.9e+02 Score=24.90 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcC
Q 003856 320 EAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSG 379 (791)
Q Consensus 320 ~lF~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~ 379 (791)
+......++-..+++ .+++|+|++++..+.++ ..+|+-.+.+..-|....+.+..
T Consensus 25 ~~Ly~~q~fs~~~ie--k~i~PEeiV~iHk~~i~---el~~~l~e~v~~Sfd~L~Evm~g 79 (84)
T 1w53_A 25 TSLYQAQKFSRKTIE--HQIPPEEIISIHRKVLK---ELYPSLPEDVFHSLDFLIEVMIG 79 (84)
T ss_dssp HHHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHH---HHCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHH--cCCCHHHHHHHHHHHHH---HhcCCChHHHHHHHHHHHHHHHH
Confidence 455566777778887 48999999999998876 77888667777777777776543
No 17
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=23.02 E-value=7.4e+02 Score=26.76 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=36.4
Q ss_pred ccccHHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHHhHHhHHHHHHHHhhcCCChhhHHHHHH-----Hhc-chhhHH
Q 003856 32 DSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQ-----HAG-NILPRL 105 (791)
Q Consensus 32 d~~~l~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~g~~l~dLYE~VQ-----yag-nIvPRL 105 (791)
+.+.+-+.|..-..-+.+.=+..-++-.|-+||-.|.+-..+ +.-.+||+.++ |.. ++.|++
T Consensus 26 ~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~------------k~g~~LY~~l~~~~~~~l~~~v~~~l 93 (410)
T 4ap2_B 26 DEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLH------------KHGEKLYTGLREVVTEHLINKVREDV 93 (410)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhh------------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333333333344466799999988886542 23457888655 665 888885
No 18
>3zth_A STU0660; DNA binding, crispr, CAS; 2.40A {Streptococcus thermophilus}
Probab=22.02 E-value=68 Score=34.29 Aligned_cols=116 Identities=16% Similarity=0.255 Sum_probs=77.4
Q ss_pred HHHHHHhccchhhhhHHHhHhHhhCCchhhHhhHHHHHhhcc-cCCCCCCH--HH----------HHHHHHHH-HHHHHh
Q 003856 242 VLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFP-QLQPSVDI--KT----------VLSRLMER-LSNYAA 307 (791)
Q Consensus 242 iLeqIv~c~D~~AQeYLmd~IiQvFPDefHl~TL~~lL~~~~-~l~~~V~i--~~----------Il~sLi~R-L~~y~~ 307 (791)
++||+-=-+..+|.+||.. +++-|--.-|+.-+++-|..+- ..|..++. .. -+-.++.. |..|..
T Consensus 86 iieQm~ykKgTll~~ylk~-~~~~fDI~~~le~INd~L~~I~~~~N~~Lnl~~~~Ieyh~e~~~~~~~qllqk~fsp~f~ 164 (350)
T 3zth_A 86 LLEQMEYKKGTLAQGYLRK-IVNQVDIVGHLEKINEQVELIEEAMNRHINLNCGQVEYHLENLPLTLDQLLTKNFSPFFA 164 (350)
T ss_dssp HHHHTSCSTTCHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHTTCCCEETTEECCCCCCCCCHHHHHHHTCCCCEE
T ss_pred HHHHHHhhhcchHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEehhcccCCHHHHHHHhcccccc
Confidence 8899999999999999988 7787777889988888887753 22222220 00 01122222 222222
Q ss_pred hccCCCch--hhhHHHHHHHHHHHHHHHhhcCC------------CChhhHHHHHHHHHHHHHHh
Q 003856 308 SSTEVLPE--FLQVEAFSKLNNAIGKVIEAQAD------------MPILGAVTLYSSLLTFTLHV 358 (791)
Q Consensus 308 ~~~~~i~~--~~~~~lF~~f~~~i~~l~~~~~~------------l~~~d~i~l~~sll~l~l~~ 358 (791)
-++..++- -...+.|-.|-+.+.++.+.+|. ++-++|+.+.+.+-.++-++
T Consensus 165 ~~~knIs~E~vsn~ekl~~fL~mL~~~ls~~t~k~LLV~kNiD~~Ls~~sy~~i~~~~~~ls~k~ 229 (350)
T 3zth_A 165 IENKNLSFEWVSNIDKLSLFLEMLDHLLSQTTEKYLIVLKNIDGFISEESYTIFYRQICHLVKKY 229 (350)
T ss_dssp ETTEEECGGGSCHHHHHHHHHHHHHHHHTTCCSCEEEEEESCGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred cCCCccChhhhccHHHHHHHHHHHHHHHhcCCCcEEEEEeCHHHhhcHHHHHHHHHHHHHHHhhC
Confidence 22233332 11356889999999999887653 78889999999999998775
No 19
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=21.84 E-value=2.5e+02 Score=25.49 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCC
Q 003856 320 EAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGE 380 (791)
Q Consensus 320 ~lF~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~ 380 (791)
.......++-.++++ .+++|+|++++..+.+. ..||+-.+.|-..|....+.+.+.
T Consensus 25 ~~Ly~aq~fsr~lie--k~I~PEeiV~iHk~~i~---~l~~~l~e~v~~s~d~L~Evm~gy 80 (111)
T 2j6y_A 25 TSLYQAQKFSRKTIE--HQIPPEEIISIHRKVLK---ELYPSLPEDVFHSLDFLIEVMIGY 80 (111)
T ss_dssp HHHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHH---HHCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHHHHHH
Confidence 456666778888888 48999999999988776 668986666766777766666544
No 20
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=21.39 E-value=2.2e+02 Score=26.61 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=36.0
Q ss_pred HHhhhcchHHHHHHHhccchhhhhHHHhHhHhhCCchhhHhhHHHHHh
Q 003856 233 TYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLG 280 (791)
Q Consensus 233 ~Y~~~iLP~iLeqIv~c~D~~AQeYLmd~IiQvFPDefHl~TL~~lL~ 280 (791)
.|.+.+.|.| ++|.+++|.+=..|++++++.-+|.+- ...|..=|.
T Consensus 57 ~~~~~l~p~I-~~vl~s~D~~W~ywil~~lv~~~~~~~-~~~l~~eL~ 102 (134)
T 3ut4_A 57 LHQSIAMPHI-LTILQGNDIMWKYWVIKLMIPYLIYPN-KQLVKSELE 102 (134)
T ss_dssp HTHHHHHHHH-HHHHHSSCHHHHHHHHHHHGGGCCHHH-HHHHHHHHH
T ss_pred HccHhhHHHH-HHHHHcCChHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Confidence 5677889988 668899999999999999999999864 334333333
No 21
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=21.12 E-value=5.4e+02 Score=24.49 Aligned_cols=198 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHhhhCCCccHHHHHH
Q 003856 524 PPLVFSSLKVLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVP--APELALRLYLQCAEAANDSDLEPVAYEFF 601 (791)
Q Consensus 524 p~LV~~~l~~L~~~~~~~~~~~~~~~~~~~~kk~f~fv~~~i~~l~~~~--~~~~~lkLyLq~A~vAd~~~~~~iaYeFf 601 (791)
|..+..... ++..+.....- .+-.++....+....... ........+..-|.+....|--+-|.++|
T Consensus 24 ~~~~~~~~~-l~~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 92 (311)
T 3nf1_A 24 PARLRTLHN-LVIQYASQGRY----------EVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL 92 (311)
T ss_dssp CHHHHHHHH-HHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHH-HHHHHHHcCCH----------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_pred HHHHHhchhcc--cCcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHhc--cCchhhHHHHHHhhhhcCCCCCC
Q 003856 602 TQAYILYEEEI--SDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKL--LKKPDQCRAVYACSHLFWVDDQD 677 (791)
Q Consensus 602 ~qAf~iyEE~i--~ds~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~askL--LkK~dQcrav~~cshL~w~~~~~ 677 (791)
.+|+.+++ .. .+......+...+...+..... .+.-.....++.....+. -..++.+.+...-+.+++
T Consensus 93 ~~al~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~----- 164 (311)
T 3nf1_A 93 NDALAIRE-KTLGKDHPAVAATLNNLAVLYGKRGK--YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ----- 164 (311)
T ss_dssp HHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHH-HHhCCCChHHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-----
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCccHhhHHHHHhhhhhhhccCCccccHHHHHHHHHHHHH
Q 003856 678 NMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFEKGNTQINAAAIQSLIELITA 748 (791)
Q Consensus 678 ~~~d~krVleCLqkslkiA~~~~d~~~~~~~~~~~~~L~veiLn~~ly~~~~~~~~v~~~~in~Li~li~~ 748 (791)
...+-+..+++++++++++..... ...-....-..+....|+..|...=-.+++...+++..+
T Consensus 165 ~~~~~~~A~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 165 NQGKYEEVEYYYQRALEIYQTKLG--------PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTSC--------TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Done!