Query 003856
Match_columns 791
No_of_seqs 136 out of 232
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 06:18:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003856.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003856hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qqea_ a.118.8.1 (A:) Vesicul 39.4 1E+02 0.0073 28.6 11.8 113 575-698 34-150 (290)
2 d1w53a_ a.186.1.2 (A:) Phospho 35.2 54 0.004 26.3 7.2 55 319-379 25-79 (84)
3 d1ldda_ a.4.5.34 (A:) Anaphase 20.2 50 0.0036 25.9 4.2 31 322-352 6-36 (74)
4 d2bpta1 a.118.1.1 (A:1-861) Im 19.8 4.4E+02 0.032 26.8 14.5 12 231-242 633-644 (861)
5 d1w9ca_ a.118.1.19 (A:) Export 17.4 3.1E+02 0.022 26.6 10.8 81 341-424 91-174 (321)
6 d1jr3a1 a.80.1.1 (A:243-368) g 13.1 3.1E+02 0.023 21.9 8.6 33 89-123 91-123 (126)
7 d2bpta1 a.118.1.1 (A:1-861) Im 12.4 6.6E+02 0.048 25.3 32.3 160 210-381 570-736 (861)
8 d1rqga1 a.27.1.1 (A:397-606) M 10.2 5E+02 0.037 22.6 10.1 64 295-358 4-73 (210)
9 d1d5ya2 a.4.1.8 (A:57-121) Rob 10.0 70 0.0051 23.8 2.4 22 585-608 18-39 (65)
10 d1bl0a2 a.4.1.8 (A:63-124) Mar 9.6 78 0.0057 23.2 2.5 21 585-607 18-38 (62)
No 1
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.43 E-value=1e+02 Score=28.55 Aligned_cols=113 Identities=10% Similarity=0.010 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHhc
Q 003856 575 ELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKL 654 (791)
Q Consensus 575 ~~~lkLyLq~A~vAd~~~~~~iaYeFf~qAf~iyEE~i~ds~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~askL 654 (791)
+.+..+|.++|.+=-.++--+-|-+.|.+|..++++. .+...-..++..+.....+... |+. +..+-..|.++
T Consensus 34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~-~~~~~~a~~~~~~g~~y~~~~~-----~~~-A~~~~~~a~~~ 106 (290)
T d1qqea_ 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA-GNEDEAGNTYVEAYKCFKSGGN-----SVN-AVDSLENAIQI 106 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC-----HHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhCC-----cHH-HHHHHHHhhHH
Confidence 6788999999988767776666778999999999853 3333334444444433333322 221 23333334444
Q ss_pred cCch----hhHHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 003856 655 LKKP----DQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANA 698 (791)
Q Consensus 655 LkK~----dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~ 698 (791)
..+. .++.+...-+.++-. ...|..+.++++++|+++...
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~A~~l~~~ 150 (290)
T d1qqea_ 107 FTHRGQFRRGANFKFELGEILEN----DLHDYAKAIDCYELAGEWYAQ 150 (290)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHhHhh----HHHHHHHHHHHHHHHHHHHHh
Confidence 3333 334444444433321 235688999999999988543
No 2
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=35.17 E-value=54 Score=26.29 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcC
Q 003856 319 VEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSG 379 (791)
Q Consensus 319 ~~lF~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~ 379 (791)
..++ ...++-.++++. +++|+|++++..+.++ ..+|+..+.+..-|....+.+.+
T Consensus 25 ~~Ly-~~~~fsre~iek--~IsPEeIV~iHk~~l~---el~~~~~e~v~~Sfd~LlEVm~g 79 (84)
T d1w53a_ 25 TSLY-QAQKFSRKTIEH--QIPPEEIISIHRKVLK---ELYPSLPEDVFHSLDFLIEVMIG 79 (84)
T ss_dssp HHHH-HHHHHHHHHHHT--TCCHHHHHHHHHHHHH---HHCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHc--CCCHHHHHHHHHHHHH---HHCCCChHHHHHHHHHHHHHHHH
Confidence 4455 778888888884 8999999999999887 67888777887777777766643
No 3
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.16 E-value=50 Score=25.89 Aligned_cols=31 Identities=6% Similarity=0.049 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003856 322 FSKLNNAIGKVIEAQADMPILGAVTLYSSLL 352 (791)
Q Consensus 322 F~~f~~~i~~l~~~~~~l~~~d~i~l~~sll 352 (791)
..+||.+|..+....+.+|++.+-.++.-++
T Consensus 6 lq~~w~yI~gMLtN~~slpleRIh~mLkmfv 36 (74)
T d1ldda_ 6 LQRSLPFIEGMLTNLGAMKLHKIHSFLKITV 36 (74)
T ss_dssp HHHHHHHHHHHHHHHCSEEHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHc
Confidence 6789999999999888999999888876553
No 4
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.81 E-value=4.4e+02 Score=26.75 Aligned_cols=12 Identities=33% Similarity=0.617 Sum_probs=5.5
Q ss_pred HHHHhhhcchHH
Q 003856 231 LDTYKETVLPRV 242 (791)
Q Consensus 231 ~~~Y~~~iLP~i 242 (791)
..-|...++|.+
T Consensus 633 ~~~~l~~i~p~l 644 (861)
T d2bpta1 633 FEKYLETFSPYL 644 (861)
T ss_dssp GHHHHHHHHHHH
T ss_pred HHHHHHHHhhHH
Confidence 344444455544
No 5
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.40 E-value=3.1e+02 Score=26.57 Aligned_cols=81 Identities=10% Similarity=0.041 Sum_probs=50.2
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhhhhHHHHHcCC--CchH
Q 003856 341 ILGAVTLYSSLLTFTLHVHPDRL-DYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLS--NYPS 417 (791)
Q Consensus 341 ~~d~i~l~~sll~l~l~~yp~~~-~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vL~l~--~f~~ 417 (791)
--+++.++.++++=.-...++.+ .-.+.|+..+.+..+... ...|+....+-++|...+.++- ..+++++ .|..
T Consensus 91 ~~eVL~l~~~ii~kl~~~~~~~v~~I~~~VFe~Tl~MI~~df-~~yPehR~~ff~LL~~i~~~cf--~~ll~lp~~qf~~ 167 (321)
T d1w9ca_ 91 EPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDF-EEYPEHRTNFFLLLQAVNSHCF--PAFLAIPPTQFKL 167 (321)
T ss_dssp CTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTT-TCSHHHHHHHHHHHHHHHHHCT--THHHHSCHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc-hhChHHHHHHHHHHHHHHHHCH--HHHHcCCHHHHHH
Confidence 34566666666654444444332 334667777777776542 3478888889999999988874 4555553 3666
Q ss_pred HHhcCCc
Q 003856 418 VMEYVDS 424 (791)
Q Consensus 418 Ll~~l~~ 424 (791)
+++.+-|
T Consensus 168 vidsi~w 174 (321)
T d1w9ca_ 168 VLDSIIW 174 (321)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 6
>d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]}
Probab=13.06 E-value=3.1e+02 Score=21.86 Aligned_cols=33 Identities=12% Similarity=-0.045 Sum_probs=23.1
Q ss_pred hhHHHHHHHhcchhhHHHHHHHHHHHHhhcCCCch
Q 003856 89 IDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPA 123 (791)
Q Consensus 89 ~dLYE~VQyagnIvPRLYLmItVG~~yi~~~~~p~ 123 (791)
.+.++.++++.| ||+++++++-+.--+.+..|.
T Consensus 91 ~~~~~~ik~s~~--~r~~~Em~llrll~~~~~~p~ 123 (126)
T d1jr3a1 91 LIGRKELPYAPD--RRMGVEMTLLRALAFHPRMPL 123 (126)
T ss_dssp HHHHHHTTTSSS--HHHHHHHHHHHHHHTCSSSCC
T ss_pred HHHHHHHhcCCC--hHHHHHHHHHHHHHcCCCCCC
Confidence 344445556667 999999999996557766654
No 7
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.38 E-value=6.6e+02 Score=25.27 Aligned_cols=160 Identities=9% Similarity=0.132 Sum_probs=76.1
Q ss_pred HHHHHHhhhchhhhhhhcCCCHHHHhhhcchHHHHHHHhccchhhhhHHHh---HhHhhCCchhhHhhHHHHHhh----c
Q 003856 210 SELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMD---CIIQVFPDEYHLQTLEILLGA----F 282 (791)
Q Consensus 210 ~eL~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~c~D~~AQeYLmd---~IiQvFPDefHl~TL~~lL~~----~ 282 (791)
.+++..++.-+..+.+.-+-+...|.+.+++.+++-+-...+.--+++.+. .++..++++|. ..++.++.. +
T Consensus 570 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~-~~l~~i~p~l~~~l 648 (861)
T d2bpta1 570 QELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFE-KYLETFSPYLLKAL 648 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhHHHHHh
Confidence 344444444444444443455666777788877665555555544555444 45667777764 223333333 2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCC
Q 003856 283 PQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDR 362 (791)
Q Consensus 283 ~~l~~~V~i~~Il~sLi~RL~~y~~~~~~~i~~~~~~~lF~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp~~ 362 (791)
.+..+. ++.....++..+......+ -.+..+.+-..+.+.++. ++.+..--...+.++-.++...-+.-
T Consensus 649 ~~~~~~--v~~~a~~~l~~i~~~~~~~--------~~~~~~~i~~~L~~~l~~-~~~~~~~k~~~~~~l~~i~~~~~~~~ 717 (861)
T d2bpta1 649 NQVDSP--VSITAVGFIADISNSLEED--------FRRYSDAMMNVLAQMISN-PNARRELKPAVLSVFGDIASNIGADF 717 (861)
T ss_dssp HCTTSH--HHHHHHHHHHHHHHHTGGG--------GHHHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHHHHHHGGGG
T ss_pred CCCCHH--HHHHHHHHHHHHHHHhHHH--------hHhhHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 233332 3333444455554333211 011222222333333332 22222222333444444444443333
Q ss_pred chhHHHHHHHHHHHhcCCC
Q 003856 363 LDYADQVLGACVKKLSGEG 381 (791)
Q Consensus 363 ~~~vd~il~~~~~~l~~~~ 381 (791)
..|++.++..+.+.+....
T Consensus 718 ~~~l~~~~~~l~~~~~~~~ 736 (861)
T d2bpta1 718 IPYLNDIMALCVAAQNTKP 736 (861)
T ss_dssp HHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhCcCC
Confidence 4688888888877766543
No 8
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Probab=10.22 E-value=5e+02 Score=22.58 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhccC-CCch-----hhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHh
Q 003856 295 LSRLMERLSNYAASSTE-VLPE-----FLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHV 358 (791)
Q Consensus 295 l~sLi~RL~~y~~~~~~-~i~~-----~~~~~lF~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~ 358 (791)
+-+|+.|-..|+...-+ .+|+ ..+..+++.+.+.+.++.+.-....+.+.+..+-+++..+-++
T Consensus 4 lGNl~~Rv~~~i~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~y 73 (210)
T d1rqga1 4 LGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRY 73 (210)
T ss_dssp HHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56788888888765432 2332 2245677777777777766655677888888888887776554
No 9
>d1d5ya2 a.4.1.8 (A:57-121) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.02 E-value=70 Score=23.77 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=18.0
Q ss_pred HHHhhhCCCccHHHHHHHHHHHhc
Q 003856 585 AEAANDSDLEPVAYEFFTQAYILY 608 (791)
Q Consensus 585 A~vAd~~~~~~iaYeFf~qAf~iy 608 (791)
.++|..+|+.+.++ |+.+|.=+
T Consensus 18 ~~IA~~~Gf~~~~~--F~r~Fk~~ 39 (65)
T d1d5ya2 18 LDIALQYRFDSQQT--FTRAFKKQ 39 (65)
T ss_dssp HHHHHHTTCSCHHH--HHHHHHHH
T ss_pred HHHHHHHCCCCHHH--HHHHHHHH
Confidence 47899999999988 88888644
No 10
>d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]}
Probab=9.64 E-value=78 Score=23.23 Aligned_cols=21 Identities=14% Similarity=0.083 Sum_probs=17.3
Q ss_pred HHHhhhCCCccHHHHHHHHHHHh
Q 003856 585 AEAANDSDLEPVAYEFFTQAYIL 607 (791)
Q Consensus 585 A~vAd~~~~~~iaYeFf~qAf~i 607 (791)
+.+|..+|+.+.++ |+.+|.=
T Consensus 18 ~~IA~~~Gf~~~~~--F~r~Fk~ 38 (62)
T d1bl0a2 18 LYLAERYGFESQQT--LTRTFKN 38 (62)
T ss_dssp HHHHHHTTCSCHHH--HHHHHHH
T ss_pred HHHHHHHCCCCHHH--HHHHHHH
Confidence 47899999999988 7877754
Done!